locus-tag	class	description
AT984_RS00025	COG0318	PFAM AMP-dependent synthetase and ligase
AT984_RS00045	COG1522	sequence-specific DNA binding
AT984_RS00085	COG3045	CreA protein
AT984_RS00100	COG0411	ABC transporter
AT984_RS00115	COG1435	thymidine kinase activity
AT984_RS00145	COG3938	Belongs to the proline racemase family
AT984_RS00150	COG1802	Transcriptional regulator
AT984_RS00155	COG1862	Preprotein translocase
AT984_RS00160	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AT984_RS00165	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AT984_RS00175	COG2922	Belongs to the Smg family
AT984_RS00180	COG0758	DNA mediated transformation
AT984_RS00190	COG0242	peptide deformylase activity
AT984_RS00195	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AT984_RS00200	COG0501	Belongs to the peptidase M48B family
AT984_RS00225	COG0126	phosphoglycerate kinase activity
AT984_RS00235	COG3706	GGDEF domain
AT984_RS00240	COG0281	malic enzyme
AT984_RS00240	COG0280	phosphate acetyltransferase
AT984_RS00245	COG0469	pyruvate kinase activity
AT984_RS00265	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AT984_RS00275	COG3118	belongs to the thioredoxin family
AT984_RS00280	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AT984_RS00285	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AT984_RS00290	COG0009	L-threonylcarbamoyladenylate synthase
AT984_RS00310	COG1573	uracil-dna glycosylase
AT984_RS00330	COG0625	glutathione transferase activity
AT984_RS00335	COG1196	nuclear chromosome segregation
AT984_RS00335	COG0741	lytic transglycosylase activity
AT984_RS00335	COG0739	heme binding
AT984_RS00350	COG0583	DNA-binding transcription factor activity
AT984_RS00400	COG3047	cAMP biosynthetic process
AT984_RS00405	COG4566	intracellular signal transduction
AT984_RS00415	COG0477	Major facilitator Superfamily
AT984_RS00425	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
AT984_RS00430	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AT984_RS00445	COG0745	RESPONSE REGULATOR receiver
AT984_RS00450	COG3214	Protein conserved in bacteria
AT984_RS00455	COG3706	GGDEF domain
AT984_RS00455	COG4251	negative regulation of phosphorylation
AT984_RS00455	COG2203	Gaf domain
AT984_RS00455	COG5001	Diguanylate cyclase
AT984_RS00460	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AT984_RS00470	COG1560	Kdo2-lipid A biosynthetic process
AT984_RS00475	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AT984_RS00485	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AT984_RS00495	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AT984_RS00500	COG1522	sequence-specific DNA binding
AT984_RS00515	COG0585	pseudouridine synthase activity
AT984_RS00550	COG0840	transmembrane signaling receptor activity
AT984_RS00560	COG4692	amylo-alpha-1,6-glucosidase activity
AT984_RS00590	COG5507	3-demethylubiquinone-9 3-methyltransferase
AT984_RS00640	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AT984_RS00680	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AT984_RS00695	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AT984_RS00695	COG0574	Belongs to the PEP-utilizing enzyme family
AT984_RS00700	COG3243	poly(R)-hydroxyalkanoic acid synthase
AT984_RS00705	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AT984_RS00710	COG2030	dehydratase
AT984_RS00715	COG0840	transmembrane signaling receptor activity
AT984_RS00790	COG0671	phosphoesterase, PA-phosphatase related
AT984_RS00795	COG0840	transmembrane signaling receptor activity
AT984_RS00850	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AT984_RS00865	COG2351	hydroxyisourate hydrolase activity
AT984_RS00895	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AT984_RS00905	COG0402	S-adenosylhomocysteine deaminase activity
AT984_RS00910	COG3845	ABC transporter
AT984_RS00915	COG4603	Belongs to the binding-protein-dependent transport system permease family
AT984_RS00935	COG0189	ligase activity
AT984_RS00935	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AT984_RS00940	COG1181	Belongs to the D-alanine--D-alanine ligase family
AT984_RS00940	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AT984_RS00945	COG1132	(ABC) transporter
AT984_RS00975	COG0583	DNA-binding transcription factor activity
AT984_RS00980	COG1960	acyl-CoA dehydrogenase activity
AT984_RS00985	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AT984_RS00990	COG0288	reversible hydration of carbon dioxide
AT984_RS00995	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
AT984_RS01000	COG0183	Belongs to the thiolase family
AT984_RS01020	COG0572	uridine kinase
AT984_RS01060	COG1366	Belongs to the anti-sigma-factor antagonist family
AT984_RS01065	COG2172	sigma factor antagonist activity
AT984_RS01080	COG1672	PFAM Archaeal ATPase
AT984_RS01080	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AT984_RS01100	COG1960	acyl-CoA dehydrogenase activity
AT984_RS01105	COG1309	transcriptional regulator
AT984_RS01110	COG0840	transmembrane signaling receptor activity
AT984_RS01130	COG0318	PFAM AMP-dependent synthetase and ligase
AT984_RS01135	COG2204	response regulator
AT984_RS01140	COG0840	transmembrane signaling receptor activity
AT984_RS01150	COG0411	ABC transporter
AT984_RS01160	COG4177	L-phenylalanine transmembrane transporter activity
AT984_RS01185	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AT984_RS01205	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AT984_RS01240	COG2354	Protein conserved in bacteria
AT984_RS01265	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AT984_RS01275	COG0037	tRNA processing
AT984_RS01290	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AT984_RS01295	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AT984_RS01300	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AT984_RS01305	COG1333	cytochrome c biogenesis protein
AT984_RS01315	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AT984_RS01320	COG1752	Esterase of the alpha-beta hydrolase superfamily
AT984_RS01330	COG0459	protein refolding
AT984_RS01335	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AT984_RS01340	COG0477	Major facilitator Superfamily
AT984_RS01345	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AT984_RS01350	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AT984_RS01355	COG1845	cytochrome c oxidase, subunit III
AT984_RS01360	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AT984_RS01365	COG3346	SURF1 family
AT984_RS01375	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AT984_RS01385	COG3409	Peptidoglycan-binding domain 1 protein
AT984_RS01385	COG3267	Type II secretory pathway component ExeA
AT984_RS01395	COG1280	lysine exporter protein (LysE YggA)
AT984_RS01400	COG0688	phosphatidylethanolamine metabolic process
AT984_RS01415	COG0438	transferase activity, transferring glycosyl groups
AT984_RS01430	COG1473	amidohydrolase
AT984_RS01440	COG0243	molybdopterin cofactor binding
AT984_RS01480	COG1131	(ABC) transporter
AT984_RS01485	COG0842	Transport permease protein
AT984_RS01500	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AT984_RS01525	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AT984_RS01530	COG0131	Imidazoleglycerol-phosphate dehydratase
AT984_RS01535	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AT984_RS01540	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
AT984_RS01545	COG0107	imidazoleglycerol-phosphate synthase activity
AT984_RS01550	COG0742	ribosomal rna small subunit methyltransferase
AT984_RS01555	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AT984_RS01560	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT984_RS01570	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
AT984_RS01575	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AT984_RS01585	COG1492	cobalamin metabolic process
AT984_RS01590	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AT984_RS01605	COG1797	cobyrinic acid a,c-diamide synthase activity
AT984_RS01610	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AT984_RS01615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT984_RS01630	COG4206	TonB-dependent receptor
AT984_RS01640	COG0193	aminoacyl-tRNA hydrolase activity
AT984_RS01655	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AT984_RS01660	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AT984_RS01670	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AT984_RS01685	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AT984_RS01690	COG1194	a g-specific adenine glycosylase
AT984_RS01700	COG1660	Displays ATPase and GTPase activities
AT984_RS01705	COG0497	DNA recombination
AT984_RS01710	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AT984_RS01715	COG1420	regulation of RNA biosynthetic process
AT984_RS01735	COG0625	glutathione transferase activity
AT984_RS01750	COG3150	esterase
AT984_RS01770	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AT984_RS01775	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AT984_RS01780	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AT984_RS01790	COG1773	rubredoxin
AT984_RS01815	COG0643	Histidine kinase
AT984_RS01815	COG2198	Histidine kinase
AT984_RS01830	COG0415	Belongs to the DNA photolyase family
AT984_RS01835	COG1678	Uncharacterized ACR, COG1678
AT984_RS01840	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AT984_RS01845	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
AT984_RS01850	COG0540	Belongs to the ATCase OTCase family
AT984_RS01855	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AT984_RS01860	COG0204	Acyl-transferase
AT984_RS01865	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AT984_RS01870	COG0588	phosphoglycerate mutase activity
AT984_RS01885	COG0840	transmembrane signaling receptor activity
AT984_RS01890	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT984_RS01900	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AT984_RS01905	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AT984_RS01915	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AT984_RS01920	COG1040	competence protein
AT984_RS01925	COG2226	methyltransferase
AT984_RS01935	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AT984_RS01940	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AT984_RS01975	COG0109	protoheme IX farnesyltransferase activity
AT984_RS01980	COG1999	signal sequence binding
AT984_RS01990	COG0835	chemotaxis
AT984_RS02000	COG1090	epimerase
AT984_RS02005	COG0012	GTP binding
AT984_RS02010	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AT984_RS02035	COG1024	Enoyl-CoA hydratase
AT984_RS02040	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AT984_RS02085	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AT984_RS02095	COG1086	Polysaccharide biosynthesis protein
AT984_RS02105	COG1091	dTDP-4-dehydrorhamnose reductase activity
AT984_RS02110	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AT984_RS02120	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AT984_RS02125	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AT984_RS02130	COG0438	transferase activity, transferring glycosyl groups
AT984_RS02150	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AT984_RS02165	COG1216	Glycosyl transferase, family 2
AT984_RS02185	COG1045	serine acetyltransferase
AT984_RS02200	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AT984_RS02205	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
AT984_RS02230	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
AT984_RS02235	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AT984_RS02255	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AT984_RS02260	COG0513	Belongs to the DEAD box helicase family
AT984_RS02265	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AT984_RS02270	COG0424	maF-like protein
AT984_RS02275	COG1399	metal-binding, possibly nucleic acid-binding protein
AT984_RS02280	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AT984_RS02285	COG0416	fatty acid biosynthetic process
AT984_RS02290	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AT984_RS02300	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS02305	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AT984_RS02310	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AT984_RS02320	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AT984_RS02325	COG0481	GTPase activity
AT984_RS02330	COG0681	Belongs to the peptidase S26 family
AT984_RS02340	COG0571	ribonuclease III activity
AT984_RS02345	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AT984_RS02350	COG1381	Involved in DNA repair and RecF pathway recombination
AT984_RS02355	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AT984_RS02365	COG0736	holo-[acyl-carrier-protein] synthase activity
AT984_RS02370	COG1472	Belongs to the glycosyl hydrolase 3 family
AT984_RS02380	COG1530	ribonuclease E activity
AT984_RS02400	COG0616	signal peptide processing
AT984_RS02400	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AT984_RS02405	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AT984_RS02410	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AT984_RS02425	COG0598	Magnesium transport protein CorA
AT984_RS02430	COG2205	protein histidine kinase activity
AT984_RS02435	COG0745	RESPONSE REGULATOR receiver
AT984_RS02445	COG0519	Catalyzes the synthesis of GMP from XMP
AT984_RS02445	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AT984_RS02450	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AT984_RS02470	COG3397	chitin binding
AT984_RS02485	COG4771	TonB-dependent receptor
AT984_RS02495	COG2197	response regulator
AT984_RS02525	COG0811	peptide transport
AT984_RS02570	COG0584	glycerophosphoryl diester phosphodiesterase
AT984_RS02575	COG3842	ATPase activity
AT984_RS02580	COG0395	ABC-type sugar transport system, permease component
AT984_RS02585	COG1175	transmembrane transport
AT984_RS02610	COG2423	ornithine cyclodeaminase activity
AT984_RS02615	COG1522	sequence-specific DNA binding
AT984_RS02635	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AT984_RS02645	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AT984_RS02685	COG1752	Esterase of the alpha-beta hydrolase superfamily
AT984_RS02720	COG4191	Histidine kinase
AT984_RS02740	COG0123	including yeast histone deacetylase and acetoin utilization protein
AT984_RS02755	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AT984_RS02760	COG1322	Protein conserved in bacteria
AT984_RS02775	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
AT984_RS02825	COG4584	PFAM Integrase catalytic
AT984_RS02830	COG1484	DNA-dependent DNA replication
AT984_RS02910	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AT984_RS02915	COG4566	intracellular signal transduction
AT984_RS02925	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
AT984_RS02930	COG0508	dehydrogenase complex catalyzes the overall conversion of
AT984_RS02935	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AT984_RS02985	COG2226	methyltransferase
AT984_RS02990	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AT984_RS03020	COG0625	glutathione transferase activity
AT984_RS03035	COG3243	poly(R)-hydroxyalkanoic acid synthase
AT984_RS03040	COG0183	Belongs to the thiolase family
AT984_RS03045	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS03055	COG1414	Transcriptional regulator
AT984_RS03090	COG0174	glutamine synthetase
AT984_RS03120	COG2233	PERMEase
AT984_RS03130	COG0242	peptide deformylase activity
AT984_RS03145	COG4181	ATPase activity
AT984_RS03155	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AT984_RS03165	COG2917	probably involved in intracellular septation
AT984_RS03170	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AT984_RS03175	COG0318	PFAM AMP-dependent synthetase and ligase
AT984_RS03195	COG0411	ABC transporter
AT984_RS03215	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AT984_RS03220	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AT984_RS03255	COG1024	Enoyl-CoA hydratase
AT984_RS03255	COG1250	3-hydroxyacyl-CoA dehydrogenase
AT984_RS03260	COG0183	Belongs to the thiolase family
AT984_RS03265	COG1960	acyl-CoA dehydrogenase activity
AT984_RS03290	COG2130	NADP-dependent
AT984_RS03295	COG2153	protein acetylation
AT984_RS03310	COG0557	exoribonuclease II activity
AT984_RS03315	COG2183	response to ionizing radiation
AT984_RS03320	COG4771	TonB-dependent receptor
AT984_RS03335	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AT984_RS03340	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AT984_RS03345	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AT984_RS03350	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AT984_RS03355	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AT984_RS03360	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AT984_RS03360	COG0072	phenylalanine-tRNA ligase activity
AT984_RS03365	COG0776	regulation of translation
AT984_RS03405	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS03410	COG1136	(ABC) transporter
AT984_RS03410	COG0577	efflux transmembrane transporter activity
AT984_RS03415	COG0577	efflux transmembrane transporter activity
AT984_RS03415	COG1136	(ABC) transporter
AT984_RS03455	COG2197	response regulator
AT984_RS03460	COG4585	Histidine kinase
AT984_RS03480	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AT984_RS03495	COG4178	(ABC) transporter
AT984_RS03520	COG0114	fumarate hydratase activity
AT984_RS03525	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT984_RS03530	COG1295	ribonuclease BN
AT984_RS03550	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
AT984_RS03580	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AT984_RS03610	COG2235	arginine
AT984_RS03645	COG0789	Transcriptional regulator
AT984_RS03650	COG0431	NADPH-dependent FMN reductase
AT984_RS03670	COG3459	Glycosyltransferase 36 associated
AT984_RS03685	COG3237	CsbD-like
AT984_RS03695	COG4499	WXG100 protein secretion system (Wss), protein YukC
AT984_RS03695	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AT984_RS03700	COG0628	permease
AT984_RS03705	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AT984_RS03710	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AT984_RS03715	COG0251	oxidation-reduction process
AT984_RS03730	COG0009	L-threonylcarbamoyladenylate synthase
AT984_RS03735	COG0613	PHP domain protein
AT984_RS03800	COG0248	Ppx GppA phosphatase
AT984_RS03810	COG0589	response to stress
AT984_RS03825	COG1722	exodeoxyribonuclease VII activity
AT984_RS03830	COG0142	geranyltranstransferase activity
AT984_RS03835	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AT984_RS03840	COG1469	GTP cyclohydrolase I activity
AT984_RS03845	COG0583	DNA-binding transcription factor activity
AT984_RS03870	COG0564	pseudouridine synthase activity
AT984_RS03885	COG0210	DNA helicase
AT984_RS03895	COG4251	negative regulation of phosphorylation
AT984_RS03895	COG3706	GGDEF domain
AT984_RS03895	COG2203	Gaf domain
AT984_RS03895	COG5001	Diguanylate cyclase
AT984_RS03925	COG0277	FAD linked oxidase domain protein
AT984_RS03940	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AT984_RS03955	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AT984_RS03965	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AT984_RS03965	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AT984_RS03975	COG4591	ABC-type transport system involved in lipoprotein release permease component
AT984_RS03980	COG1136	(ABC) transporter
AT984_RS03990	COG0084	hydrolase, TatD family'
AT984_RS04005	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AT984_RS04085	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AT984_RS04095	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AT984_RS04095	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AT984_RS04125	COG0028	Belongs to the TPP enzyme family
AT984_RS04130	COG0440	acetolactate synthase activity
AT984_RS04135	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AT984_RS04140	COG1183	phosphatidylcholine synthase activity
AT984_RS04145	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AT984_RS04150	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AT984_RS04160	COG1414	Transcriptional regulator
AT984_RS04170	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
AT984_RS04175	COG1562	ergosterol biosynthetic process
AT984_RS04190	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT984_RS04200	COG0544	peptidyl-prolyl cis-trans isomerase activity
AT984_RS04205	COG0740	serine-type endopeptidase activity
AT984_RS04210	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AT984_RS04215	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AT984_RS04260	COG2963	transposase activity
AT984_RS04290	COG3039	Transposase
AT984_RS04325	COG1484	DNA-dependent DNA replication
AT984_RS04330	COG3344	reverse transcriptase
AT984_RS04380	COG1484	DNA-dependent DNA replication
AT984_RS04390	COG2963	transposase activity
AT984_RS04400	COG2963	transposase activity
AT984_RS04415	COG2963	transposase activity
AT984_RS04440	COG1684	flagellar biosynthetic protein fliR
AT984_RS04450	COG1338	Plays a role in the flagellum-specific transport system
AT984_RS04460	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AT984_RS04500	COG1766	The M ring may be actively involved in energy transduction
AT984_RS04505	COG1677	Flagellar hook-basal body complex protein FliE
AT984_RS04520	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
AT984_RS04535	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AT984_RS04540	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AT984_RS04545	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AT984_RS04550	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AT984_RS04595	COG0463	Glycosyl transferase, family 2
AT984_RS04595	COG0457	Tetratricopeptide repeat
AT984_RS04615	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AT984_RS04625	COG0745	RESPONSE REGULATOR receiver
AT984_RS04630	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AT984_RS04640	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AT984_RS04655	COG1191	sigma factor activity
AT984_RS04680	COG4251	negative regulation of phosphorylation
AT984_RS04700	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AT984_RS04710	COG1705	Flagellar rod assembly protein muramidase FlgJ
AT984_RS04710	COG3951	Flagellar rod assembly protein muramidase FlgJ
AT984_RS04715	COG1706	bacterial-type flagellum-dependent cell motility
AT984_RS04720	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AT984_RS04725	COG4786	Flagellar basal body rod
AT984_RS04745	COG1558	bacterial-type flagellum-dependent cell motility
AT984_RS04750	COG1815	bacterial-type flagellum-dependent cell motility
AT984_RS04775	COG0475	glutathione-regulated potassium exporter activity
AT984_RS04775	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AT984_RS04780	COG2249	NAD(P)H dehydrogenase (quinone) activity
AT984_RS04785	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
AT984_RS04795	COG2197	response regulator
AT984_RS04810	COG0659	secondary active sulfate transmembrane transporter activity
AT984_RS04815	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AT984_RS04815	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AT984_RS04825	COG0850	regulation of cytokinetic process
AT984_RS04835	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AT984_RS04840	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AT984_RS04845	COG4628	conserved protein (DUF2132)
AT984_RS04855	COG2909	trisaccharide binding
AT984_RS04865	COG1451	nucleotide metabolic process
AT984_RS04875	COG0023	Translation Initiation Factor
AT984_RS04885	COG0513	Belongs to the DEAD box helicase family
AT984_RS04895	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AT984_RS04910	COG3275	phosphorelay sensor kinase activity
AT984_RS04920	COG0433	COG0433 Predicted ATPase
AT984_RS04925	COG0217	transcriptional regulatory protein
AT984_RS04930	COG0151	Belongs to the GarS family
AT984_RS04940	COG0408	coproporphyrinogen oxidase activity
AT984_RS04950	COG0799	negative regulation of ribosome biogenesis
AT984_RS04955	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AT984_RS04960	COG0424	maF-like protein
AT984_RS04965	COG1530	ribonuclease E activity
AT984_RS04970	COG0823	Involved in the tonB-independent uptake of proteins
AT984_RS04985	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AT984_RS05000	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT984_RS05005	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AT984_RS05010	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AT984_RS05015	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AT984_RS05020	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AT984_RS05030	COG0741	lytic transglycosylase activity
AT984_RS05030	COG1388	LysM domain
AT984_RS05035	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AT984_RS05045	COG0328	RNA-DNA hybrid ribonuclease activity
AT984_RS05050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS05055	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT984_RS05060	COG0747	negative chemotaxis
AT984_RS05065	COG0717	Belongs to the dCTP deaminase family
AT984_RS05080	COG0840	transmembrane signaling receptor activity
AT984_RS05100	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT984_RS05105	COG1304	FMN binding
AT984_RS05110	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AT984_RS05115	COG0840	transmembrane signaling receptor activity
AT984_RS05135	COG0745	RESPONSE REGULATOR receiver
AT984_RS05145	COG2205	protein histidine kinase activity
AT984_RS05150	COG0165	Argininosuccinate lyase
AT984_RS05155	COG3275	phosphorelay sensor kinase activity
AT984_RS05165	COG0395	ABC-type sugar transport system, permease component
AT984_RS05170	COG1116	anion transmembrane transporter activity
AT984_RS05180	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AT984_RS05185	COG0181	hydroxymethylbilane synthase activity
AT984_RS05215	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AT984_RS05225	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AT984_RS05230	COG1758	RNA polymerase activity
AT984_RS05235	COG0194	GDP metabolic process
AT984_RS05250	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS05255	COG0741	lytic transglycosylase activity
AT984_RS05275	COG0405	Gamma-glutamyltransferase
AT984_RS05285	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AT984_RS05300	COG2951	lytic endotransglycosylase activity
AT984_RS05315	COG0714	Associated with various cellular activities
AT984_RS05320	COG0123	including yeast histone deacetylase and acetoin utilization protein
AT984_RS05325	COG1196	nuclear chromosome segregation
AT984_RS05325	COG3264	Mechanosensitive ion channel
AT984_RS05395	COG2909	trisaccharide binding
AT984_RS05420	COG4247	3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)
AT984_RS05470	COG3275	phosphorelay sensor kinase activity
AT984_RS05480	COG0840	transmembrane signaling receptor activity
AT984_RS05495	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AT984_RS05510	COG4654	Cytochrome c, class I
AT984_RS05530	COG0709	Synthesizes selenophosphate from selenide and ATP
AT984_RS05535	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
AT984_RS05540	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AT984_RS05545	COG3639	organic phosphonate transmembrane transporter activity
AT984_RS05550	COG3639	organic phosphonate transmembrane transporter activity
AT984_RS05570	COG0823	Involved in the tonB-independent uptake of proteins
AT984_RS05590	COG1132	(ABC) transporter
AT984_RS05595	COG0438	transferase activity, transferring glycosyl groups
AT984_RS05600	COG1216	Glycosyl transferase, family 2
AT984_RS05615	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AT984_RS05635	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AT984_RS05640	COG0287	Prephenate dehydrogenase
AT984_RS05645	COG1605	Chorismate mutase
AT984_RS05645	COG0077	Prephenate dehydratase
AT984_RS05650	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AT984_RS05670	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AT984_RS05785	COG1475	DNA binding
AT984_RS05980	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AT984_RS06120	COG1484	DNA-dependent DNA replication
AT984_RS06125	COG4584	PFAM Integrase catalytic
AT984_RS06130	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AT984_RS06170	COG0583	DNA-binding transcription factor activity
AT984_RS06175	COG0450	alkyl hydroperoxide reductase
AT984_RS06205	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AT984_RS06210	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AT984_RS06215	COG1393	Belongs to the ArsC family
AT984_RS06220	COG0004	ammonium transporteR
AT984_RS06225	COG0307	riboflavin synthase, alpha
AT984_RS06320	COG2197	response regulator
AT984_RS06335	COG2902	Dehydrogenase
AT984_RS06355	COG0217	transcriptional regulatory protein
AT984_RS06365	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AT984_RS06365	COG2755	lipolytic protein G-D-S-L family
AT984_RS06370	COG3842	ATPase activity
AT984_RS06385	COG0395	ABC-type sugar transport system, permease component
AT984_RS06425	COG0837	glucose binding
AT984_RS06430	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT984_RS06430	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AT984_RS06445	COG0129	dihydroxy-acid dehydratase activity
AT984_RS06450	COG0583	DNA-binding transcription factor activity
AT984_RS06460	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AT984_RS06500	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
AT984_RS06505	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AT984_RS06510	COG0024	Methionine aminopeptidase
AT984_RS06515	COG1968	undecaprenyl-diphosphatase activity
AT984_RS06520	COG1309	transcriptional regulator
AT984_RS06535	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AT984_RS06540	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT984_RS06550	COG3022	response to hydroperoxide
AT984_RS06565	COG1522	sequence-specific DNA binding
AT984_RS06570	COG0028	Belongs to the TPP enzyme family
AT984_RS06580	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AT984_RS06590	COG0322	excinuclease ABC activity
AT984_RS06600	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AT984_RS06605	COG0776	regulation of translation
AT984_RS06615	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AT984_RS06630	COG3321	synthase
AT984_RS06630	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS06630	COG0604	alcohol dehydrogenase
AT984_RS06635	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AT984_RS06640	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AT984_RS06650	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AT984_RS06655	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AT984_RS06660	COG0670	Belongs to the BI1 family
AT984_RS06665	COG3193	protein, possibly involved in utilization of glycolate and propanediol
AT984_RS06670	COG0505	Belongs to the CarA family
AT984_RS06675	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AT984_RS06680	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AT984_RS06690	COG1534	Rna-binding protein
AT984_RS06695	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AT984_RS06700	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AT984_RS06710	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AT984_RS06715	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AT984_RS06720	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AT984_RS06725	COG0573	inorganic phosphate transmembrane transporter activity
AT984_RS06730	COG0581	inorganic phosphate transmembrane transporter activity
AT984_RS06735	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AT984_RS06760	COG0254	rRNA binding
AT984_RS06765	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AT984_RS06790	COG0625	glutathione transferase activity
AT984_RS06815	COG0436	Aminotransferase
AT984_RS06820	COG0583	DNA-binding transcription factor activity
AT984_RS06840	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AT984_RS06870	COG3275	phosphorelay sensor kinase activity
AT984_RS06880	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AT984_RS06910	COG1126	abc transporter atp-binding protein
AT984_RS06975	COG1459	type II secretion system
AT984_RS06980	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AT984_RS06985	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AT984_RS06995	COG1595	DNA-templated transcription, initiation
AT984_RS07005	COG3220	belongs to the UPF0276 family
AT984_RS07030	COG0811	peptide transport
AT984_RS07035	COG0824	Thioesterase
AT984_RS07040	COG0436	Aminotransferase
AT984_RS07080	COG2963	transposase activity
AT984_RS07095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AT984_RS07100	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AT984_RS07110	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AT984_RS07110	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AT984_RS07115	COG2974	May be involved in recombination
AT984_RS07150	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AT984_RS07155	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AT984_RS07160	COG0741	lytic transglycosylase activity
AT984_RS07165	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AT984_RS07180	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AT984_RS07185	COG1136	(ABC) transporter
AT984_RS07205	COG4206	TonB-dependent receptor
AT984_RS07210	COG0259	pyridoxamine-phosphate oxidase activity
AT984_RS07235	COG4191	Histidine kinase
AT984_RS07265	COG3264	Mechanosensitive ion channel
AT984_RS07265	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
AT984_RS07275	COG0800	Aldolase
AT984_RS07300	COG0697	spore germination
AT984_RS07325	COG2319	Wd-40 repeat
AT984_RS07325	COG4249	Peptidase C14 caspase catalytic subunit p20
AT984_RS07330	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS07340	COG1177	transmembrane transport
AT984_RS07345	COG1176	ABC-type spermidine putrescine transport system, permease component I
AT984_RS07350	COG3842	ATPase activity
AT984_RS07355	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AT984_RS07365	COG0174	glutamine synthetase
AT984_RS07375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT984_RS07380	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AT984_RS07395	COG2833	Protein of unknown function (DUF455)
AT984_RS07405	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AT984_RS07420	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AT984_RS07425	COG0148	phosphopyruvate hydratase activity
AT984_RS07435	COG0504	CTP synthase activity
AT984_RS07445	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AT984_RS07450	COG0483	inositol monophosphate 1-phosphatase activity
AT984_RS07455	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AT984_RS07460	COG1045	serine acetyltransferase
AT984_RS07465	COG0521	Mo-molybdopterin cofactor biosynthetic process
AT984_RS07470	COG3028	Belongs to the UPF0307 family
AT984_RS07475	COG0312	modulator of DNA gyrase
AT984_RS07480	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AT984_RS07500	COG1610	YqeY-like protein
AT984_RS07505	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AT984_RS07510	COG2081	HI0933 family
AT984_RS07520	COG0730	response to heat
AT984_RS07540	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AT984_RS07550	COG0463	Glycosyl transferase, family 2
AT984_RS07565	COG2878	Part of a membrane complex involved in electron transport
AT984_RS07580	COG0556	nucleotide-excision repair
AT984_RS07585	COG1959	2 iron, 2 sulfur cluster binding
AT984_RS07590	COG1104	cysteine desulfurase activity
AT984_RS07595	COG0822	iron-sulfur transferase activity
AT984_RS07600	COG0316	Belongs to the HesB IscA family
AT984_RS07605	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AT984_RS07610	COG0443	Heat shock 70 kDa protein
AT984_RS07620	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AT984_RS07625	COG0071	Belongs to the small heat shock protein (HSP20) family
AT984_RS07630	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AT984_RS07635	COG1185	polyribonucleotide nucleotidyltransferase activity
AT984_RS07640	COG3321	synthase
AT984_RS07640	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS07640	COG0604	alcohol dehydrogenase
AT984_RS07645	COG0149	triose-phosphate isomerase activity
AT984_RS07660	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT984_RS07665	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT984_RS07670	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT984_RS07675	COG0649	NAD binding
AT984_RS07680	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AT984_RS07690	COG1034	ATP synthesis coupled electron transport
AT984_RS07695	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AT984_RS07700	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT984_RS07710	COG0713	ATP synthesis coupled electron transport
AT984_RS07725	COG1007	ATP synthesis coupled electron transport
AT984_RS07735	COG0494	nUDIX hydrolase
AT984_RS07745	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS07755	COG0277	FAD linked oxidase domain protein
AT984_RS07765	COG1295	ribonuclease BN
AT984_RS07780	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AT984_RS07810	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AT984_RS07815	COG2814	Major facilitator Superfamily
AT984_RS07840	COG1760	l-serine dehydratase
AT984_RS07845	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AT984_RS07845	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AT984_RS07850	COG0509	glycine decarboxylation via glycine cleavage system
AT984_RS07855	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AT984_RS07865	COG0456	acetyltransferase
AT984_RS07870	COG1228	amidohydrolase
AT984_RS07885	COG5654	RES domain protein
AT984_RS07890	COG5642	Protein of unknown function (DUF2384)
AT984_RS07905	COG1360	Flagellar Motor Protein
AT984_RS07935	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS07960	COG0154	amidase activity
AT984_RS07965	COG0531	amino acid
AT984_RS07970	COG1231	oxidoreductase activity
AT984_RS07975	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS07990	COG0174	glutamine synthetase
AT984_RS07995	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT984_RS08050	COG2963	transposase activity
AT984_RS08080	COG3850	Histidine kinase
AT984_RS08085	COG2197	response regulator
AT984_RS08100	COG4974	Belongs to the 'phage' integrase family
AT984_RS08105	COG3328	transposase activity
AT984_RS08120	COG4644	lycopene metabolic process
AT984_RS08125	COG0840	transmembrane signaling receptor activity
AT984_RS08145	COG1959	2 iron, 2 sulfur cluster binding
AT984_RS08150	COG0348	domain, Protein
AT984_RS08195	COG0535	radical SAM domain protein
AT984_RS08210	COG1522	sequence-specific DNA binding
AT984_RS08215	COG3391	amine dehydrogenase activity
AT984_RS08225	COG1648	precorrin-2 dehydrogenase activity
AT984_RS08225	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AT984_RS08235	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT984_RS08250	COG0714	Associated with various cellular activities
AT984_RS08260	COG2010	Cytochrome c
AT984_RS08275	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
AT984_RS08290	COG0348	domain, Protein
AT984_RS08290	COG3901	Regulator of nitric oxide reductase transcription
AT984_RS08295	COG4263	nitrous-oxide reductase activity
AT984_RS08305	COG4263	nitrous-oxide reductase activity
AT984_RS08315	COG1477	protein flavinylation
AT984_RS08340	COG2197	response regulator
AT984_RS08345	COG2205	protein histidine kinase activity
AT984_RS08345	COG2198	Histidine kinase
AT984_RS08345	COG0784	Response regulator, receiver
AT984_RS08355	COG4989	oxidoreductase activity
AT984_RS08370	COG0084	hydrolase, TatD family'
AT984_RS08385	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AT984_RS08390	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AT984_RS08410	COG0657	acetylesterase activity
AT984_RS08420	COG2224	Isocitrate lyase
AT984_RS08425	COG2095	MarC family integral membrane protein
AT984_RS08430	COG4974	Belongs to the 'phage' integrase family
AT984_RS08440	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AT984_RS08445	COG0802	atpase or kinase
AT984_RS08450	COG0860	N-Acetylmuramoyl-L-alanine amidase
AT984_RS08455	COG0586	Pfam SNARE associated Golgi protein
AT984_RS08465	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AT984_RS08475	COG1187	pseudouridine synthase activity
AT984_RS08480	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AT984_RS08485	COG1136	(ABC) transporter
AT984_RS08490	COG0577	efflux transmembrane transporter activity
AT984_RS08500	COG2814	Major facilitator Superfamily
AT984_RS08505	COG1566	PFAM secretion protein HlyD family protein
AT984_RS08520	COG1132	(ABC) transporter
AT984_RS08540	COG3126	Type III secretion system lipoprotein chaperone (YscW)
AT984_RS08550	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AT984_RS08580	COG0513	Belongs to the DEAD box helicase family
AT984_RS08585	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AT984_RS08590	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AT984_RS08600	COG2759	Belongs to the formate--tetrahydrofolate ligase family
AT984_RS08605	COG1024	Enoyl-CoA hydratase
AT984_RS08620	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AT984_RS08625	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AT984_RS08630	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AT984_RS08635	COG2251	uridine kinase activity
AT984_RS08635	COG0195	Participates in both transcription termination and antitermination
AT984_RS08640	COG0779	Required for maturation of 30S ribosomal subunits
AT984_RS08685	COG2067	long-chain fatty acid transport protein
AT984_RS08710	COG0024	Methionine aminopeptidase
AT984_RS08720	COG0318	PFAM AMP-dependent synthetase and ligase
AT984_RS08750	COG1215	transferase activity, transferring glycosyl groups
AT984_RS08760	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AT984_RS08780	COG2244	polysaccharide biosynthetic process
AT984_RS08790	COG0367	asparagine synthase
AT984_RS08805	COG0297	glycogen (starch) synthase activity
AT984_RS08810	COG0438	transferase activity, transferring glycosyl groups
AT984_RS08815	COG0367	asparagine synthase
AT984_RS08840	COG3267	Type II secretory pathway component ExeA
AT984_RS08840	COG3409	Peptidoglycan-binding domain 1 protein
AT984_RS08850	COG0489	protein tyrosine kinase activity
AT984_RS08875	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AT984_RS08890	COG2204	response regulator
AT984_RS08895	COG4191	Histidine kinase
AT984_RS08900	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AT984_RS08905	COG4584	PFAM Integrase catalytic
AT984_RS08910	COG1484	DNA-dependent DNA replication
AT984_RS08915	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AT984_RS08920	COG1253	flavin adenine dinucleotide binding
AT984_RS08930	COG1196	nuclear chromosome segregation
AT984_RS08935	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AT984_RS08940	COG0436	Aminotransferase
AT984_RS08945	COG2171	N-acyltransferase activity
AT984_RS08955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AT984_RS08960	COG2890	protein-(glutamine-N5) methyltransferase activity
AT984_RS08965	COG0488	(ABC) transporter
AT984_RS08970	COG1846	Transcriptional regulator
AT984_RS08975	COG1764	response to oxidative stress
AT984_RS08990	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AT984_RS09025	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AT984_RS09050	COG0285	dihydrofolate synthase activity
AT984_RS09055	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AT984_RS09060	COG0159	tryptophan synthase activity
AT984_RS09065	COG0133	tryptophan synthase activity
AT984_RS09070	COG0135	phosphoribosylanthranilate isomerase activity
AT984_RS09075	COG0101	tRNA pseudouridine synthase activity
AT984_RS09085	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AT984_RS09090	COG0473	3-isopropylmalate dehydrogenase activity
AT984_RS09095	COG0066	3-isopropylmalate dehydratase activity
AT984_RS09100	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AT984_RS09120	COG4770	biotin carboxylase activity
AT984_RS09130	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AT984_RS09135	COG1703	isobutyryl-CoA mutase activity
AT984_RS09145	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
AT984_RS09145	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
AT984_RS09150	COG1802	Transcriptional regulator
AT984_RS09190	COG1086	Polysaccharide biosynthesis protein
AT984_RS09205	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
AT984_RS09210	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AT984_RS09225	COG4310	Domain of unknown function (DUF2172)
AT984_RS09230	COG2089	acid synthase
AT984_RS09240	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AT984_RS09250	COG0300	oxidoreductase activity
AT984_RS09275	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AT984_RS09330	COG2059	Chromate
AT984_RS09335	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AT984_RS09340	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AT984_RS09355	COG3852	Histidine kinase
AT984_RS09360	COG0047	phosphoribosylformylglycinamidine synthase activity
AT984_RS09360	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AT984_RS09370	COG0402	S-adenosylhomocysteine deaminase activity
AT984_RS09380	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT984_RS09385	COG1609	Transcriptional regulator
AT984_RS09390	COG0372	Belongs to the citrate synthase family
AT984_RS09395	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AT984_RS09400	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AT984_RS09405	COG1053	succinate dehydrogenase
AT984_RS09420	COG2188	Transcriptional regulator
AT984_RS09425	COG0039	L-malate dehydrogenase activity
AT984_RS09465	COG4584	PFAM Integrase catalytic
AT984_RS09470	COG1484	DNA-dependent DNA replication
AT984_RS09495	COG0702	epimerase
AT984_RS09515	COG0022	dehydrogenase e1 component
AT984_RS09540	COG2925	Exonuclease
AT984_RS09560	COG0516	GMP reductase activity
AT984_RS09565	COG1902	pentaerythritol trinitrate reductase activity
AT984_RS09570	COG0525	valine-tRNA ligase activity
AT984_RS09580	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AT984_RS09585	COG0425	Belongs to the sulfur carrier protein TusA family
AT984_RS09655	COG0582	viral genome integration into host DNA
AT984_RS09695	COG0863	Belongs to the N(4) N(6)-methyltransferase family
AT984_RS09730	COG4584	PFAM Integrase catalytic
AT984_RS09735	COG1484	DNA-dependent DNA replication
AT984_RS09745	COG2963	transposase activity
AT984_RS09765	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AT984_RS09770	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AT984_RS09775	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AT984_RS09780	COG1674	ftsk spoiiie
AT984_RS09790	COG0492	ferredoxin-NADP+ reductase activity
AT984_RS09795	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AT984_RS09800	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AT984_RS09815	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AT984_RS09815	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AT984_RS09825	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AT984_RS09830	COG0180	Tryptophanyl-tRNA synthetase
AT984_RS09840	COG0534	Mate efflux family protein
AT984_RS09845	COG2205	protein histidine kinase activity
AT984_RS09860	COG0488	(ABC) transporter
AT984_RS09865	COG0840	transmembrane signaling receptor activity
AT984_RS09870	COG0625	glutathione transferase activity
AT984_RS09875	COG0513	Belongs to the DEAD box helicase family
AT984_RS09880	COG0702	epimerase
AT984_RS09890	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AT984_RS09890	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT984_RS09905	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AT984_RS09920	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AT984_RS09925	COG0167	dihydroorotate dehydrogenase activity
AT984_RS09935	COG2954	triphosphatase activity
AT984_RS09985	COG0275	rRNA processing
AT984_RS09990	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AT984_RS09995	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
AT984_RS10015	COG2850	peptidyl-arginine hydroxylation
AT984_RS10020	COG1047	Peptidyl-prolyl cis-trans
AT984_RS10025	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS10035	COG0756	dUTP diphosphatase activity
AT984_RS10040	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AT984_RS10050	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AT984_RS10055	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
AT984_RS10065	COG0295	cytidine deaminase activity
AT984_RS10070	COG1079	Belongs to the binding-protein-dependent transport system permease family
AT984_RS10075	COG4603	Belongs to the binding-protein-dependent transport system permease family
AT984_RS10080	COG3845	ABC transporter
AT984_RS10085	COG1744	ABC transporter substrate-binding protein PnrA-like
AT984_RS10110	COG1752	Esterase of the alpha-beta hydrolase superfamily
AT984_RS10140	COG0564	pseudouridine synthase activity
AT984_RS10150	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS10170	COG0494	nUDIX hydrolase
AT984_RS10175	COG0335	large ribosomal subunit rRNA binding
AT984_RS10180	COG0336	Belongs to the RNA methyltransferase TrmD family
AT984_RS10185	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AT984_RS10190	COG0228	four-way junction DNA binding
AT984_RS10210	COG0306	phosphate transporter
AT984_RS10225	COG0617	tRNA 3'-terminal CCA addition
AT984_RS10235	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AT984_RS10245	COG0728	peptidoglycan biosynthetic process
AT984_RS10250	COG0268	Binds directly to 16S ribosomal RNA
AT984_RS10270	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AT984_RS10275	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AT984_RS10285	COG2815	serine threonine protein kinase
AT984_RS10285	COG0515	serine threonine protein kinase
AT984_RS10305	COG0366	Alpha amylase catalytic
AT984_RS10310	COG0366	Alpha amylase catalytic
AT984_RS10330	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AT984_RS10335	COG0058	SHG alpha-glucan phosphorylase activity
AT984_RS10340	COG3842	ATPase activity
AT984_RS10350	COG1175	transmembrane transport
AT984_RS10355	COG3833	ABC-type maltose transport systems, permease component
AT984_RS10375	COG0837	glucose binding
AT984_RS10380	COG0837	glucose binding
AT984_RS10380	COG1737	Transcriptional regulator
AT984_RS10385	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AT984_RS10400	COG3842	ATPase activity
AT984_RS10405	COG1840	ABC-type Fe3 transport system, periplasmic component
AT984_RS10415	COG3300	MHYT domain
AT984_RS10415	COG5001	Diguanylate cyclase
AT984_RS10420	COG0534	Mate efflux family protein
AT984_RS10440	COG1960	acyl-CoA dehydrogenase activity
AT984_RS10445	COG0251	oxidation-reduction process
AT984_RS10485	COG1960	acyl-CoA dehydrogenase activity
AT984_RS10490	COG1024	Enoyl-CoA hydratase
AT984_RS10500	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS10510	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
AT984_RS10520	COG3483	tryptophan 2,3-dioxygenase activity
AT984_RS10525	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AT984_RS10530	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT984_RS10530	COG2205	protein histidine kinase activity
AT984_RS10595	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AT984_RS10600	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AT984_RS10605	COG1047	Peptidyl-prolyl cis-trans
AT984_RS10610	COG2003	Belongs to the UPF0758 family
AT984_RS10625	COG3291	Pkd domain containing protein
AT984_RS10630	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AT984_RS10635	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS10640	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT984_RS10655	COG3706	GGDEF domain
AT984_RS10660	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AT984_RS10665	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AT984_RS10670	COG2201	protein-glutamate methylesterase activity
AT984_RS10680	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AT984_RS10685	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AT984_RS10690	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AT984_RS10695	COG0631	protein serine/threonine phosphatase activity
AT984_RS10705	COG1561	YicC-like family, N-terminal region
AT984_RS10725	COG0653	protein targeting
AT984_RS10755	COG1538	Outer membrane efflux protein
AT984_RS10765	COG4566	intracellular signal transduction
AT984_RS10775	COG2900	Belongs to the SlyX family
AT984_RS10780	COG1054	Belongs to the UPF0176 family
AT984_RS10790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT984_RS10795	COG4215	(ABC) transporter
AT984_RS10835	COG1741	Belongs to the pirin family
AT984_RS10840	COG0583	DNA-binding transcription factor activity
AT984_RS10845	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AT984_RS10900	COG2378	regulation of single-species biofilm formation
AT984_RS10905	COG1196	nuclear chromosome segregation
AT984_RS10925	COG0513	Belongs to the DEAD box helicase family
AT984_RS10945	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AT984_RS10950	COG0501	Belongs to the peptidase M48B family
AT984_RS10955	COG2154	pterin-4-alpha-carbinolamine dehydratase
AT984_RS10960	COG1162	GTPase activity
AT984_RS10965	COG1982	Orn Lys Arg decarboxylase major
AT984_RS10975	COG0531	amino acid
AT984_RS10980	COG1982	Orn Lys Arg decarboxylase major
AT984_RS10990	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS11015	COG1505	serine-type exopeptidase activity
AT984_RS11025	COG0318	PFAM AMP-dependent synthetase and ligase
AT984_RS11030	COG0137	argininosuccinate synthase activity
AT984_RS11040	COG0784	Response regulator, receiver
AT984_RS11040	COG2205	protein histidine kinase activity
AT984_RS11040	COG2198	Histidine kinase
AT984_RS11045	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AT984_RS11050	COG1666	GTP binding
AT984_RS11070	COG1960	acyl-CoA dehydrogenase activity
AT984_RS11075	COG1960	acyl-CoA dehydrogenase activity
AT984_RS11080	COG1187	pseudouridine synthase activity
AT984_RS11085	COG0784	Response regulator, receiver
AT984_RS11085	COG2198	Histidine kinase
AT984_RS11085	COG2205	protein histidine kinase activity
AT984_RS11090	COG0196	riboflavin kinase activity
AT984_RS11095	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AT984_RS11100	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AT984_RS11110	COG4999	Histidine kinase
AT984_RS11110	COG3850	Histidine kinase
AT984_RS11110	COG2205	protein histidine kinase activity
AT984_RS11110	COG3437	response regulator, receiver
AT984_RS11120	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS11135	COG3706	GGDEF domain
AT984_RS11140	COG3852	Histidine kinase
AT984_RS11155	COG0477	Major facilitator Superfamily
AT984_RS11195	COG1288	antiporter activity
AT984_RS11220	COG4206	TonB-dependent receptor
AT984_RS11220	COG4206	TonB-dependent receptor
AT984_RS11230	COG3132	Protein of unknown function, DUF480
AT984_RS11235	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS11265	COG0527	aspartate kinase activity
AT984_RS11270	COG0037	tRNA processing
AT984_RS11275	COG0825	malonyl-CoA metabolic process
AT984_RS11285	COG0215	cysteine-tRNA ligase activity
AT984_RS11310	COG3228	Belongs to the MtfA family
AT984_RS11315	COG0542	response to heat
AT984_RS11320	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AT984_RS11325	COG1278	Cold shock
AT984_RS11350	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AT984_RS11355	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT984_RS11390	COG3278	Belongs to the heme-copper respiratory oxidase family
AT984_RS11410	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AT984_RS11415	COG1570	exodeoxyribonuclease VII activity
AT984_RS11420	COG0811	peptide transport
AT984_RS11425	COG0848	biopolymer transport protein
AT984_RS11430	COG1663	tetraacyldisaccharide 4'-kinase activity
AT984_RS11435	COG2835	tetraacyldisaccharide 4'-kinase activity
AT984_RS11440	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AT984_RS11445	COG0563	adenylate kinase activity
AT984_RS11490	COG4172	Belongs to the ABC transporter superfamily
AT984_RS11495	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT984_RS11500	COG0601	transmembrane transport
AT984_RS11510	COG1619	proteins homologs of microcin C7 resistance protein MccF
AT984_RS11525	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AT984_RS11525	COG0519	Catalyzes the synthesis of GMP from XMP
AT984_RS11545	COG2914	Belongs to the UPF0125 (RnfH) family
AT984_RS11550	COG2867	negative regulation of translational initiation
AT984_RS11555	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AT984_RS11560	COG0626	cystathionine gamma-synthase activity
AT984_RS11565	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AT984_RS11570	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
AT984_RS11575	COG3590	peptidase
AT984_RS11590	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AT984_RS11600	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS11625	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AT984_RS11630	COG1752	Esterase of the alpha-beta hydrolase superfamily
AT984_RS11650	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AT984_RS11650	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AT984_RS11655	COG3781	membrane
AT984_RS11665	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AT984_RS11685	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AT984_RS11690	COG0560	Phosphoserine phosphatase
AT984_RS11700	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AT984_RS11730	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AT984_RS11750	COG0542	response to heat
AT984_RS11770	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AT984_RS11775	COG0314	molybdopterin synthase activity
AT984_RS11805	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AT984_RS11815	COG0545	Peptidyl-prolyl cis-trans isomerase
AT984_RS11825	COG2076	Multidrug Resistance protein
AT984_RS11845	COG0789	Transcriptional regulator
AT984_RS11855	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
AT984_RS11860	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AT984_RS11865	COG0303	'Molybdopterin
AT984_RS11880	COG0436	Aminotransferase
AT984_RS11890	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AT984_RS11895	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AT984_RS11900	COG0561	phosphatase activity
AT984_RS11910	COG0791	NLP P60 protein
AT984_RS11920	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS11920	COG2030	dehydratase
AT984_RS11935	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AT984_RS11940	COG2151	metal-sulfur cluster biosynthetic enzyme
AT984_RS11945	COG3396	Phenylacetate-CoA oxygenase
AT984_RS11950	COG3460	Phenylacetate-CoA oxygenase
AT984_RS11955	COG3396	Phenylacetate-CoA oxygenase
AT984_RS11965	COG2050	protein possibly involved in aromatic compounds catabolism
AT984_RS11970	COG1024	Enoyl-CoA hydratase
AT984_RS11980	COG5000	phosphorelay sensor kinase activity
AT984_RS11985	COG0784	Response regulator, receiver
AT984_RS11985	COG3437	response regulator, receiver
AT984_RS11990	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AT984_RS11995	COG0746	molybdenum cofactor guanylyltransferase activity
AT984_RS12000	COG0456	acetyltransferase
AT984_RS12000	COG0454	-acetyltransferase
AT984_RS12005	COG0303	'Molybdopterin
AT984_RS12045	COG0509	glycine decarboxylation via glycine cleavage system
AT984_RS12055	COG3276	selenocysteine insertion sequence binding
AT984_RS12060	COG1921	L-seryl-tRNASec selenium transferase activity
AT984_RS12065	COG3058	Necessary for formate dehydrogenase activity
AT984_RS12070	COG2864	formate dehydrogenase
AT984_RS12075	COG0437	4 iron, 4 sulfur cluster binding
AT984_RS12080	COG3383	formate dehydrogenase (NAD+) activity
AT984_RS12080	COG0243	molybdopterin cofactor binding
AT984_RS12085	COG3383	formate dehydrogenase (NAD+) activity
AT984_RS12085	COG0243	molybdopterin cofactor binding
AT984_RS12090	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AT984_RS12095	COG0489	protein tyrosine kinase activity
AT984_RS12105	COG2815	serine threonine protein kinase
AT984_RS12105	COG0515	serine threonine protein kinase
AT984_RS12120	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AT984_RS12125	COG2176	DNA-directed DNA polymerase activity
AT984_RS12130	COG0243	molybdopterin cofactor binding
AT984_RS12135	COG1643	Atp-dependent helicase
AT984_RS12140	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AT984_RS12140	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AT984_RS12145	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AT984_RS12150	COG1840	ABC-type Fe3 transport system, periplasmic component
AT984_RS12155	COG2916	Histone family protein nucleoid-structuring protein H-NS
AT984_RS12190	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AT984_RS12215	COG0642	Histidine kinase
AT984_RS12225	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AT984_RS12230	COG0443	Heat shock 70 kDa protein
AT984_RS12235	COG0484	heat shock protein binding
AT984_RS12285	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AT984_RS12290	COG0640	Transcriptional regulator
AT984_RS12305	COG1294	oxidase, subunit
AT984_RS12310	COG0723	plastoquinol--plastocyanin reductase activity
AT984_RS12335	COG2963	transposase activity
AT984_RS12345	COG1484	DNA-dependent DNA replication
AT984_RS12350	COG4584	PFAM Integrase catalytic
AT984_RS12370	COG0305	Participates in initiation and elongation during chromosome replication
AT984_RS12375	COG0359	binds to the 23S rRNA
AT984_RS12380	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AT984_RS12385	COG2965	DNA replication, synthesis of RNA primer
AT984_RS12390	COG0360	Binds together with S18 to 16S ribosomal RNA
AT984_RS12395	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AT984_RS12405	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AT984_RS12415	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AT984_RS12420	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AT984_RS12425	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AT984_RS12430	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AT984_RS12435	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AT984_RS12440	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AT984_RS12455	COG0750	zinc metalloprotease
AT984_RS12460	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AT984_RS12475	COG0233	cytoplasmic translational termination
AT984_RS12480	COG0528	UMP kinase activity
AT984_RS12485	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AT984_RS12490	COG0052	Belongs to the universal ribosomal protein uS2 family
AT984_RS12495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT984_RS12500	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AT984_RS12500	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AT984_RS12505	COG0557	exoribonuclease II activity
AT984_RS12520	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AT984_RS12525	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
AT984_RS12530	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
AT984_RS12535	COG0330	HflC and HflK could
AT984_RS12540	COG0330	HflC and HflK could
AT984_RS12545	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AT984_RS12550	COG1923	regulation of RNA biosynthetic process
AT984_RS12555	COG1160	GTP binding
AT984_RS12570	COG0124	histidyl-tRNA synthetase
AT984_RS12575	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AT984_RS12590	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AT984_RS12595	COG0105	UTP biosynthetic process
AT984_RS12600	COG1187	pseudouridine synthase activity
AT984_RS12605	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AT984_RS12610	COG0564	pseudouridine synthase activity
AT984_RS12620	COG1199	ATP-dependent helicase activity
AT984_RS12640	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AT984_RS12645	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AT984_RS12650	COG2076	Multidrug Resistance protein
AT984_RS12655	COG0508	dehydrogenase complex catalyzes the overall conversion of
AT984_RS12660	COG0567	Dehydrogenase, E1 component
AT984_RS12675	COG0747	negative chemotaxis
AT984_RS12680	COG0747	negative chemotaxis
AT984_RS12690	COG3239	Fatty acid desaturase
AT984_RS12700	COG1960	acyl-CoA dehydrogenase activity
AT984_RS12715	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AT984_RS12750	COG0745	RESPONSE REGULATOR receiver
AT984_RS12755	COG2198	Histidine kinase
AT984_RS12755	COG0643	Histidine kinase
AT984_RS12760	COG0840	transmembrane signaling receptor activity
AT984_RS12765	COG0835	chemotaxis
AT984_RS12770	COG0840	transmembrane signaling receptor activity
AT984_RS12775	COG0840	transmembrane signaling receptor activity
AT984_RS12780	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AT984_RS12785	COG3384	dioxygenase
AT984_RS12815	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AT984_RS12820	COG3177	Filamentation induced by cAMP protein fic
AT984_RS12830	COG0732	type I restriction modification DNA specificity domain
AT984_RS12835	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AT984_RS12875	COG4372	Transposase
AT984_RS12880	COG1484	DNA-dependent DNA replication
AT984_RS12885	COG4584	PFAM Integrase catalytic
AT984_RS12905	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AT984_RS12935	COG1484	DNA-dependent DNA replication
AT984_RS12940	COG4584	PFAM Integrase catalytic
AT984_RS12950	COG1403	HNH endonuclease
AT984_RS12965	COG0737	Belongs to the 5'-nucleotidase family
AT984_RS12975	COG0840	transmembrane signaling receptor activity
AT984_RS12980	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS12985	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AT984_RS12990	COG3318	Belongs to the UPF0149 family
AT984_RS13000	COG1247	-acetyltransferase
AT984_RS13010	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AT984_RS13015	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT984_RS13025	COG3655	Transcriptional regulator
AT984_RS13045	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AT984_RS13055	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AT984_RS13060	COG0308	aminopeptidase N
AT984_RS13065	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AT984_RS13095	COG2963	transposase activity
AT984_RS13130	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
AT984_RS13135	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AT984_RS13145	COG3046	protein related to deoxyribodipyrimidine photolyase
AT984_RS13150	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS13160	COG1653	transport
AT984_RS13210	COG0179	Fumarylacetoacetate (FAA) hydrolase
AT984_RS13220	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AT984_RS13245	COG0427	acetyl-CoA hydrolase
AT984_RS13260	COG1253	flavin adenine dinucleotide binding
AT984_RS13265	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AT984_RS13275	COG2823	Periplasmic or secreted lipoprotein
AT984_RS13285	COG0431	NADPH-dependent FMN reductase
AT984_RS13290	COG0798	PFAM Bile acid sodium symporter
AT984_RS13295	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AT984_RS13340	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AT984_RS13350	COG0823	Involved in the tonB-independent uptake of proteins
AT984_RS13350	COG1506	peptidase
AT984_RS13360	COG0729	surface antigen
AT984_RS13375	COG1178	ABC-type Fe3 transport system permease component
AT984_RS13380	COG3842	ATPase activity
AT984_RS13385	COG0793	Belongs to the peptidase S41A family
AT984_RS13390	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AT984_RS13400	COG0010	Belongs to the arginase family
AT984_RS13435	COG1228	amidohydrolase
AT984_RS13445	COG2188	Transcriptional regulator
AT984_RS13450	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AT984_RS13455	COG2986	histidine ammonia-lyase
AT984_RS13465	COG5001	Diguanylate cyclase
AT984_RS13465	COG3706	GGDEF domain
AT984_RS13465	COG2203	Gaf domain
AT984_RS13465	COG4251	negative regulation of phosphorylation
AT984_RS13475	COG3568	Endonuclease Exonuclease Phosphatase
AT984_RS13480	COG0494	nUDIX hydrolase
AT984_RS13485	COG4191	Histidine kinase
AT984_RS13490	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AT984_RS13510	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AT984_RS13520	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AT984_RS13530	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AT984_RS13555	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AT984_RS13580	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
AT984_RS13595	COG0438	transferase activity, transferring glycosyl groups
AT984_RS13605	COG0367	asparagine synthase
AT984_RS13610	COG1215	transferase activity, transferring glycosyl groups
AT984_RS13615	COG1216	Glycosyl transferase, family 2
AT984_RS13635	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AT984_RS13665	COG1596	polysaccharide export
AT984_RS13675	COG2226	methyltransferase
AT984_RS13690	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AT984_RS13700	COG0730	response to heat
AT984_RS13705	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AT984_RS13720	COG0175	sulfate reduction
AT984_RS13725	COG2895	sulfate adenylyltransferase (ATP) activity
AT984_RS13730	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AT984_RS13730	COG1648	precorrin-2 dehydrogenase activity
AT984_RS13735	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AT984_RS13740	COG0492	ferredoxin-NADP+ reductase activity
AT984_RS13790	COG0653	protein targeting
AT984_RS13805	COG2969	positive regulation of protein catabolic process
AT984_RS13810	COG0625	glutathione transferase activity
AT984_RS13815	COG2857	Cytochrome c1
AT984_RS13820	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AT984_RS13825	COG0723	plastoquinol--plastocyanin reductase activity
AT984_RS13830	COG1970	mechanosensitive ion channel activity
AT984_RS13840	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AT984_RS13845	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AT984_RS13850	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AT984_RS13855	COG0805	protein transport
AT984_RS13860	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AT984_RS13865	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AT984_RS13880	COG0140	phosphoribosyl-ATP diphosphatase activity
AT984_RS13885	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AT984_RS13915	COG1309	transcriptional regulator
AT984_RS13920	COG2197	response regulator
AT984_RS13930	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AT984_RS13935	COG1490	D-aminoacyl-tRNA deacylase activity
AT984_RS14010	COG0587	DNA-directed DNA polymerase activity
AT984_RS14025	COG1335	isochorismatase
AT984_RS14035	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AT984_RS14050	COG4221	oxidoreductase activity
AT984_RS14060	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
AT984_RS14065	COG1238	metal cluster binding
AT984_RS14075	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AT984_RS14080	COG0138	bifunctional purine biosynthesis protein purh
AT984_RS14100	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
AT984_RS14110	COG4589	Belongs to the CDS family
AT984_RS14115	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AT984_RS14130	COG1132	(ABC) transporter
AT984_RS14135	COG1132	(ABC) transporter
AT984_RS14145	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AT984_RS14150	COG4585	Histidine kinase
AT984_RS14155	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AT984_RS14165	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AT984_RS14170	COG1181	Belongs to the D-alanine--D-alanine ligase family
AT984_RS14175	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AT984_RS14180	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AT984_RS14190	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AT984_RS14195	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AT984_RS14200	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AT984_RS14205	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AT984_RS14220	COG0275	rRNA processing
AT984_RS14225	COG2001	Belongs to the MraZ family
AT984_RS14230	COG2205	protein histidine kinase activity
AT984_RS14230	COG0784	Response regulator, receiver
AT984_RS14230	COG2198	Histidine kinase
AT984_RS14240	COG2814	Major facilitator Superfamily
AT984_RS14260	COG1505	serine-type exopeptidase activity
AT984_RS14265	COG1505	serine-type exopeptidase activity
AT984_RS14270	COG0557	exoribonuclease II activity
AT984_RS14280	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AT984_RS14285	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AT984_RS14300	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AT984_RS14305	COG0511	ligase activity, forming carbon-carbon bonds
AT984_RS14310	COG0439	Biotin carboxylase
AT984_RS14315	COG2264	protein methyltransferase activity
AT984_RS14330	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AT984_RS14335	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AT984_RS14335	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AT984_RS14360	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AT984_RS14370	COG2423	ornithine cyclodeaminase activity
AT984_RS14385	COG3246	L-lysine catabolic process to acetate
AT984_RS14395	COG1024	Enoyl-CoA hydratase
AT984_RS14400	COG1960	acyl-CoA dehydrogenase activity
AT984_RS14405	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AT984_RS14410	COG1028	Short-chain dehydrogenase reductase Sdr
AT984_RS14465	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AT984_RS14475	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AT984_RS14480	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AT984_RS14495	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AT984_RS14500	COG0163	prenyltransferase activity
AT984_RS14505	COG0741	lytic transglycosylase activity
AT984_RS14510	COG0442	prolyl-tRNA aminoacylation
AT984_RS14515	COG0494	nUDIX hydrolase
AT984_RS14520	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AT984_RS14525	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AT984_RS14530	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AT984_RS14535	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AT984_RS14540	COG0142	geranyltranstransferase activity
AT984_RS14560	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AT984_RS14565	COG1074	ATP-dependent DNA helicase activity
AT984_RS14570	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AT984_RS14625	COG0418	dihydroorotase activity
AT984_RS14640	COG1126	abc transporter atp-binding protein
AT984_RS14645	COG0765	amino acid transport
AT984_RS14650	COG0765	amino acid transport
AT984_RS14655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT984_RS14660	COG0583	DNA-binding transcription factor activity
AT984_RS14670	COG5265	(ABC) transporter
AT984_RS14685	COG1024	Enoyl-CoA hydratase
AT984_RS14695	COG0183	Belongs to the thiolase family
AT984_RS14700	COG1024	Enoyl-CoA hydratase
AT984_RS14700	COG1250	3-hydroxyacyl-CoA dehydrogenase
AT984_RS14710	COG1960	acyl-CoA dehydrogenase activity
AT984_RS14735	COG0745	RESPONSE REGULATOR receiver
AT984_RS14745	COG2198	Histidine kinase
AT984_RS14745	COG0643	Histidine kinase
AT984_RS14750	COG0840	transmembrane signaling receptor activity
AT984_RS14755	COG0840	transmembrane signaling receptor activity
AT984_RS14760	COG0835	chemotaxis
AT984_RS14770	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AT984_RS14775	COG2201	protein-glutamate methylesterase activity
AT984_RS14780	COG0745	RESPONSE REGULATOR receiver
AT984_RS14785	COG0840	transmembrane signaling receptor activity
AT984_RS14810	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
AT984_RS14815	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AT984_RS14825	COG0166	Belongs to the GPI family
AT984_RS14830	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AT984_RS14835	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AT984_RS14840	COG1737	Transcriptional regulator
AT984_RS14840	COG0837	glucose binding
AT984_RS14860	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AT984_RS14865	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AT984_RS14870	COG1127	ABC transporter
AT984_RS14910	COG0067	glutamate synthase
AT984_RS14910	COG0069	glutamate synthase activity
AT984_RS14910	COG0070	glutamate synthase
AT984_RS14920	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AT984_RS14930	COG2963	transposase activity
AT984_RS14935	COG1484	DNA-dependent DNA replication
AT984_RS14940	COG4584	PFAM Integrase catalytic
AT984_RS14945	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AT984_RS14990	COG1965	Belongs to the frataxin family
AT984_RS14995	COG4608	Belongs to the ABC transporter superfamily
AT984_RS15000	COG0444	Belongs to the ABC transporter superfamily
AT984_RS15005	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT984_RS15010	COG0601	transmembrane transport
AT984_RS15025	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AT984_RS15035	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
AT984_RS15040	COG1765	OsmC-like protein
AT984_RS15045	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AT984_RS15050	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AT984_RS15120	COG0793	Belongs to the peptidase S41A family
AT984_RS15120	COG4946	Tricorn protease homolog
AT984_RS15125	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AT984_RS15135	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AT984_RS15140	COG0316	Belongs to the HesB IscA family
AT984_RS15145	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AT984_RS15150	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AT984_RS15165	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AT984_RS15175	COG3210	domain, Protein
AT984_RS15180	COG5002	protein histidine kinase activity
AT984_RS15185	COG0745	RESPONSE REGULATOR receiver
AT984_RS15190	COG0326	Molecular chaperone. Has ATPase activity
AT984_RS15200	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AT984_RS15205	COG0312	modulator of DNA gyrase
AT984_RS15225	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AT984_RS15230	COG0792	nuclease activity
AT984_RS15235	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AT984_RS15240	COG2823	Periplasmic or secreted lipoprotein
AT984_RS15245	COG2084	Dehydrogenase
AT984_RS15275	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AT984_RS15275	COG2010	Cytochrome c
AT984_RS15280	COG0840	transmembrane signaling receptor activity
AT984_RS15300	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AT984_RS15325	COG0789	Transcriptional regulator
AT984_RS15330	COG1960	acyl-CoA dehydrogenase activity
AT984_RS15335	COG0183	Belongs to the thiolase family
AT984_RS15360	COG3228	Belongs to the MtfA family
AT984_RS15385	COG2824	Alkylphosphonate utilization operon protein PhnA
AT984_RS15390	COG1522	sequence-specific DNA binding
AT984_RS15410	COG0589	response to stress
AT984_RS15425	COG0531	amino acid
AT984_RS15435	COG1404	Belongs to the peptidase S8 family
AT984_RS15450	COG1042	CoA-binding domain protein
AT984_RS15450	COG0045	succinate-CoA ligase (ADP-forming) activity
AT984_RS15450	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT984_RS15465	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AT984_RS15470	COG4208	sulfate ABC transporter
AT984_RS15475	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AT984_RS15480	COG0583	DNA-binding transcription factor activity
AT984_RS15510	COG3038	cytochrome b561
AT984_RS15530	COG4206	TonB-dependent receptor
AT984_RS15535	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AT984_RS15540	COG0840	transmembrane signaling receptor activity
AT984_RS15560	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AT984_RS15565	COG0243	molybdopterin cofactor binding
AT984_RS15570	COG1278	Cold shock
AT984_RS15590	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS15620	COG4575	ribosome binding
AT984_RS15625	COG0686	Belongs to the AlaDH PNT family
AT984_RS15630	COG0205	6-phosphofructokinase activity
AT984_RS15650	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT984_RS15650	COG4191	Histidine kinase
AT984_RS15660	COG4770	biotin carboxylase activity
AT984_RS15670	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AT984_RS15675	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AT984_RS15680	COG0156	8-amino-7-oxononanoate synthase activity
AT984_RS15690	COG1024	Enoyl-CoA hydratase
AT984_RS15700	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AT984_RS15725	COG2217	Heavy metal translocating P-type atpase
AT984_RS15740	COG0640	Transcriptional regulator
AT984_RS15765	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AT984_RS15810	COG2205	protein histidine kinase activity
AT984_RS15810	COG0784	Response regulator, receiver
AT984_RS15840	COG0751	glycine-tRNA ligase activity
AT984_RS15845	COG0752	glycyl-tRNA synthetase alpha subunit
AT984_RS15850	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AT984_RS15860	COG0523	cobalamin synthesis protein
AT984_RS15880	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AT984_RS15885	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AT984_RS15895	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AT984_RS15900	COG0840	transmembrane signaling receptor activity
AT984_RS15945	COG4566	intracellular signal transduction
AT984_RS15950	COG0406	alpha-ribazole phosphatase activity
AT984_RS15960	COG1703	isobutyryl-CoA mutase activity
AT984_RS15960	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
AT984_RS15960	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
AT984_RS15970	COG4716	Myosin-crossreactive antigen
AT984_RS15980	COG0583	DNA-binding transcription factor activity
AT984_RS15985	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AT984_RS15990	COG3002	Belongs to the UPF0753 family
AT984_RS16040	COG4771	TonB-dependent receptor
AT984_RS16065	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AT984_RS16070	COG2199	diguanylate cyclase activity
AT984_RS16080	COG0784	Response regulator, receiver
AT984_RS16080	COG2205	protein histidine kinase activity
AT984_RS16080	COG5002	protein histidine kinase activity
AT984_RS16115	COG0183	Belongs to the thiolase family
AT984_RS16120	COG1414	Transcriptional regulator
AT984_RS16125	COG1250	3-hydroxyacyl-CoA dehydrogenase
AT984_RS16130	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AT984_RS16140	COG3383	formate dehydrogenase (NAD+) activity
AT984_RS16160	COG2329	Antibiotic biosynthesis monooxygenase
AT984_RS16180	COG0776	regulation of translation
AT984_RS16185	COG5001	Diguanylate cyclase
AT984_RS16195	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS16230	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AT984_RS16235	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AT984_RS16240	COG3275	phosphorelay sensor kinase activity
AT984_RS16260	COG0346	lactoylglutathione lyase activity
AT984_RS16275	COG1525	nuclease
AT984_RS16285	COG0210	DNA helicase
AT984_RS16290	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AT984_RS16295	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AT984_RS16320	COG2204	response regulator
AT984_RS16325	COG5000	phosphorelay sensor kinase activity
AT984_RS16355	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AT984_RS16365	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AT984_RS16375	COG2963	transposase activity
AT984_RS16390	COG3275	phosphorelay sensor kinase activity
AT984_RS16405	COG0612	Peptidase, M16
AT984_RS16425	COG4999	Histidine kinase
AT984_RS16425	COG3850	Histidine kinase
AT984_RS16425	COG2205	protein histidine kinase activity
AT984_RS16425	COG3437	response regulator, receiver
AT984_RS16440	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
AT984_RS16440	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
AT984_RS16450	COG1404	Belongs to the peptidase S8 family
AT984_RS16455	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AT984_RS16465	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AT984_RS16480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT984_RS16480	COG4191	Histidine kinase
AT984_RS16485	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AT984_RS16490	COG3706	GGDEF domain
AT984_RS16490	COG4251	negative regulation of phosphorylation
AT984_RS16490	COG2203	Gaf domain
AT984_RS16490	COG5001	Diguanylate cyclase
AT984_RS16510	COG0667	Aldo Keto reductase
AT984_RS16520	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AT984_RS16545	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AT984_RS16565	COG0625	glutathione transferase activity
AT984_RS16585	COG1131	(ABC) transporter
AT984_RS16595	COG0840	transmembrane signaling receptor activity
AT984_RS16600	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AT984_RS16605	COG0598	Magnesium transport protein CorA
AT984_RS16610	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AT984_RS16620	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AT984_RS16625	COG0735	belongs to the Fur family
AT984_RS16630	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AT984_RS16635	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AT984_RS16650	COG0495	leucyl-tRNA aminoacylation
AT984_RS16670	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AT984_RS16680	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AT984_RS16705	COG0281	malic enzyme
AT984_RS16705	COG0280	phosphate acetyltransferase
AT984_RS16715	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AT984_RS16720	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AT984_RS16725	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AT984_RS16730	COG3178	'Phosphotransferase
AT984_RS16740	COG2267	carboxylic ester hydrolase activity
AT984_RS16745	COG1024	Enoyl-CoA hydratase
AT984_RS16760	COG0625	glutathione transferase activity
AT984_RS16765	COG0625	glutathione transferase activity
AT984_RS16770	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AT984_RS16800	COG2813	Specifically methylates the guanine in position
AT984_RS16800	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AT984_RS16805	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AT984_RS16815	COG0616	signal peptide processing
AT984_RS16820	COG0069	glutamate synthase activity
AT984_RS16835	COG0625	glutathione transferase activity
AT984_RS16840	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT984_RS16845	COG1136	(ABC) transporter
AT984_RS16850	COG4591	ABC-type transport system involved in lipoprotein release permease component
AT984_RS16855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS16890	COG2205	protein histidine kinase activity
AT984_RS16895	COG0745	RESPONSE REGULATOR receiver
AT984_RS16900	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT984_RS16905	COG0284	orotidine-5'-phosphate decarboxylase activity
AT984_RS16930	COG0840	transmembrane signaling receptor activity
AT984_RS16950	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AT984_RS16950	COG2010	Cytochrome c
AT984_RS16975	COG3279	Response regulator of the LytR AlgR family
AT984_RS16980	COG2972	Histidine kinase
AT984_RS16985	COG0121	glutamine amidotransferase
AT984_RS16990	COG0644	oxidoreductase
AT984_RS17010	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AT984_RS17015	COG0583	DNA-binding transcription factor activity
AT984_RS17040	COG0018	arginyl-trna synthetase
AT984_RS17050	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AT984_RS17060	COG1137	ATPase activity
AT984_RS17065	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AT984_RS17080	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AT984_RS17090	COG0318	PFAM AMP-dependent synthetase and ligase
AT984_RS17115	COG0482	sulfurtransferase activity
AT984_RS17120	COG4585	Histidine kinase
AT984_RS17125	COG2197	response regulator
AT984_RS17135	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS17140	COG1136	(ABC) transporter
AT984_RS17150	COG0577	efflux transmembrane transporter activity
AT984_RS17180	COG2165	general secretion pathway protein
AT984_RS17220	COG2165	general secretion pathway protein
AT984_RS17245	COG0514	ATP-dependent DNA helicase (RecQ)
AT984_RS17265	COG1131	(ABC) transporter
AT984_RS17330	COG3128	pkhd-type hydroxylase
AT984_RS17355	COG0861	Integral membrane protein TerC family
AT984_RS17360	COG1950	PFAM Membrane protein of
AT984_RS17365	COG4783	chaperone-mediated protein folding
AT984_RS17370	COG0315	cyclic pyranopterin monophosphate synthase activity
AT984_RS17375	COG3307	-O-antigen
AT984_RS17385	COG1131	(ABC) transporter
AT984_RS17395	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AT984_RS17415	COG3104	oligopeptide transport
AT984_RS17460	COG0300	oxidoreductase activity
AT984_RS17480	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AT984_RS17505	COG0708	Exodeoxyribonuclease III
AT984_RS17510	COG4771	TonB-dependent receptor
AT984_RS17515	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AT984_RS17525	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AT984_RS17530	COG0154	amidase activity
AT984_RS17535	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AT984_RS17540	COG1077	Cell shape determining protein MreB Mrl
AT984_RS17555	COG0768	penicillin binding
AT984_RS17560	COG0772	Belongs to the SEDS family
AT984_RS17575	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AT984_RS17585	COG2137	regulation of response to DNA damage stimulus
AT984_RS17595	COG0045	succinate-CoA ligase (ADP-forming) activity
AT984_RS17600	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AT984_RS17605	COG0861	Integral membrane protein TerC family
AT984_RS17610	COG0515	serine threonine protein kinase
AT984_RS17615	COG0631	protein serine/threonine phosphatase activity
AT984_RS17625	COG4251	negative regulation of phosphorylation
AT984_RS17625	COG2203	Gaf domain
AT984_RS17625	COG3706	GGDEF domain
AT984_RS17625	COG5001	Diguanylate cyclase
AT984_RS17660	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AT984_RS17670	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AT984_RS17680	COG2095	MarC family integral membrane protein
AT984_RS17695	COG0724	RNA recognition motif
AT984_RS17705	COG0300	oxidoreductase activity
AT984_RS17715	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AT984_RS17730	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AT984_RS17760	COG1136	(ABC) transporter
AT984_RS17760	COG0577	efflux transmembrane transporter activity
AT984_RS17765	COG1136	(ABC) transporter
AT984_RS17765	COG0577	efflux transmembrane transporter activity
AT984_RS17770	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS17790	COG3706	GGDEF domain
AT984_RS17795	COG3706	GGDEF domain
AT984_RS17805	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT984_RS17820	COG0747	negative chemotaxis
AT984_RS17825	COG0747	negative chemotaxis
AT984_RS17830	COG4166	transmembrane transport
AT984_RS17840	COG2832	Protein of unknown function (DUF454)
AT984_RS17870	COG1234	tRNA 3'-trailer cleavage
AT984_RS17880	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AT984_RS17905	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AT984_RS17910	COG1054	Belongs to the UPF0176 family
AT984_RS17920	COG0688	phosphatidylethanolamine metabolic process
AT984_RS17925	COG0583	DNA-binding transcription factor activity
AT984_RS17930	COG0667	Aldo Keto reductase
AT984_RS17940	COG0180	Tryptophanyl-tRNA synthetase
AT984_RS17945	COG1022	Amp-dependent synthetase and ligase
AT984_RS17980	COG2918	glutathione biosynthetic process
AT984_RS17985	COG1960	acyl-CoA dehydrogenase activity
AT984_RS17990	COG5001	Diguanylate cyclase
AT984_RS17990	COG4251	negative regulation of phosphorylation
AT984_RS17990	COG3706	GGDEF domain
AT984_RS17990	COG2203	Gaf domain
AT984_RS17995	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AT984_RS18010	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AT984_RS18025	COG0515	serine threonine protein kinase
AT984_RS18025	COG2815	serine threonine protein kinase
AT984_RS18040	COG0706	membrane insertase activity
AT984_RS18045	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AT984_RS18055	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AT984_RS18105	COG4584	PFAM Integrase catalytic
AT984_RS18110	COG1484	DNA-dependent DNA replication
AT984_RS18125	COG2963	transposase activity
AT984_RS18155	COG1881	PFAM PEBP family protein
AT984_RS18175	COG1129	ABC transporter
AT984_RS18175	COG0842	Transport permease protein
AT984_RS18180	COG0842	Transport permease protein
AT984_RS18195	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AT984_RS18255	COG5002	protein histidine kinase activity
AT984_RS18255	COG5001	Diguanylate cyclase
AT984_RS18255	COG3447	MASE1 domain protein
AT984_RS18265	COG5001	Diguanylate cyclase
AT984_RS18300	COG1091	dTDP-4-dehydrorhamnose reductase activity
AT984_RS18335	COG2879	small protein
AT984_RS18340	COG1966	Carbon starvation protein
AT984_RS18345	COG0840	transmembrane signaling receptor activity
AT984_RS18385	COG3590	peptidase
AT984_RS18400	COG3088	subunit of a heme lyase
AT984_RS18405	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AT984_RS18415	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AT984_RS18435	COG4133	protoheme IX ABC transporter activity
AT984_RS18445	COG2264	protein methyltransferase activity
AT984_RS18450	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AT984_RS18455	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
AT984_RS18460	COG0720	synthase
AT984_RS18465	COG0602	queuosine metabolic process
AT984_RS18470	COG1301	dicarboxylic acid transport
AT984_RS18490	COG1199	ATP-dependent helicase activity
AT984_RS18490	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AT984_RS18530	COG2096	Adenosyltransferase
AT984_RS18545	COG0277	FAD linked oxidase domain protein
AT984_RS18555	COG2719	SpoVR family
AT984_RS18560	COG2718	Belongs to the UPF0229 family
AT984_RS18565	COG2766	serine protein kinase
AT984_RS18570	COG1475	DNA binding
AT984_RS18580	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AT984_RS18595	COG1192	Involved in chromosome partitioning
AT984_RS18600	COG0357	Ribosomal RNA small subunit methyltransferase G
AT984_RS18605	COG0445	tRNA wobble uridine modification
AT984_RS18620	COG3437	response regulator, receiver
AT984_RS18625	COG5002	protein histidine kinase activity
AT984_RS18625	COG2205	protein histidine kinase activity
AT984_RS18625	COG0784	Response regulator, receiver
AT984_RS18630	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT984_RS18635	COG0697	spore germination
AT984_RS18655	COG2197	response regulator
AT984_RS18665	COG5002	protein histidine kinase activity
AT984_RS18670	COG1668	transmembrane transport
AT984_RS18675	COG4555	ABC transporter
AT984_RS18690	COG2030	dehydratase
AT984_RS18690	COG1012	belongs to the aldehyde dehydrogenase family
AT984_RS18715	COG1902	pentaerythritol trinitrate reductase activity
AT984_RS18715	COG0446	pyridine nucleotide-disulphide oxidoreductase
AT984_RS18740	COG0471	metal ion transport
AT984_RS18745	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AT984_RS18770	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT984_RS18805	COG1522	sequence-specific DNA binding
AT984_RS18810	COG0840	transmembrane signaling receptor activity
AT984_RS18815	COG0730	response to heat
AT984_RS18820	COG0778	Nitroreductase
AT984_RS18830	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AT984_RS18840	COG1116	anion transmembrane transporter activity
AT984_RS18845	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AT984_RS18865	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AT984_RS18920	COG4584	PFAM Integrase catalytic
AT984_RS18925	COG1484	DNA-dependent DNA replication
AT984_RS18945	COG0454	-acetyltransferase
AT984_RS19005	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AT984_RS19015	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AT984_RS19025	COG0583	DNA-binding transcription factor activity
AT984_RS19030	COG1917	Cupin 2, conserved barrel domain protein
AT984_RS19040	COG2985	domain, Protein
AT984_RS19050	COG3258	Cytochrome c
AT984_RS19065	COG0673	inositol 2-dehydrogenase activity
AT984_RS19070	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AT984_RS19090	COG0559	Belongs to the binding-protein-dependent transport system permease family
AT984_RS19125	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AT984_RS19130	COG2015	COG2015, Alkyl sulfatase and related hydrolases
AT984_RS19155	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS19180	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT984_RS19185	COG4558	Periplasmic binding protein
AT984_RS19190	COG3720	iron ion transport
AT984_RS19200	COG0783	Belongs to the Dps family
AT984_RS19215	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
AT984_RS19225	COG3852	Histidine kinase
AT984_RS19235	COG2169	Transcriptional regulator
AT984_RS19235	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AT984_RS19250	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AT984_RS19255	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AT984_RS19260	COG0545	Peptidyl-prolyl cis-trans isomerase
AT984_RS19275	COG4133	protoheme IX ABC transporter activity
AT984_RS19280	COG0826	peptidase U32
AT984_RS19290	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AT984_RS19315	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AT984_RS19320	COG1448	Aminotransferase
AT984_RS19355	COG1522	sequence-specific DNA binding
AT984_RS19360	COG3622	Belongs to the hyi family
AT984_RS19380	COG1619	proteins homologs of microcin C7 resistance protein MccF
AT984_RS19390	COG0583	DNA-binding transcription factor activity
AT984_RS19395	COG0747	negative chemotaxis
AT984_RS19405	COG0010	Belongs to the arginase family
AT984_RS19435	COG3788	relative of glutathione S-transferase, MAPEG superfamily
AT984_RS19440	COG4608	Belongs to the ABC transporter superfamily
AT984_RS19445	COG0444	Belongs to the ABC transporter superfamily
AT984_RS19450	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT984_RS19455	COG0601	transmembrane transport
AT984_RS19460	COG3023	N-Acetylmuramoyl-L-alanine amidase
AT984_RS19465	COG1739	Uncharacterized protein family UPF0029
AT984_RS19475	COG0343	queuine tRNA-ribosyltransferase activity
AT984_RS19520	COG2268	Band 7 protein
AT984_RS19605	COG2963	transposase activity
AT984_RS19615	COG2963	transposase activity
AT984_RS19635	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AT984_RS19645	COG1902	pentaerythritol trinitrate reductase activity
AT984_RS19655	COG2258	MOSC domain
AT984_RS19665	COG0243	molybdopterin cofactor binding
AT984_RS19675	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AT984_RS19680	COG1116	anion transmembrane transporter activity
AT984_RS19685	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AT984_RS19690	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AT984_RS19705	COG2204	response regulator
AT984_RS19715	COG1136	(ABC) transporter
AT984_RS19715	COG0577	efflux transmembrane transporter activity
AT984_RS19735	COG0297	glycogen (starch) synthase activity
AT984_RS19795	COG0612	Peptidase, M16
AT984_RS19805	COG2963	transposase activity
AT984_RS19810	COG3177	Filamentation induced by cAMP protein fic
AT984_RS19815	COG4584	PFAM Integrase catalytic
AT984_RS19820	COG1484	DNA-dependent DNA replication
AT984_RS19835	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
AT984_RS19885	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT984_RS19890	COG0443	Heat shock 70 kDa protein
AT984_RS19945	COG1305	Transglutaminase-like
AT984_RS19955	COG2308	Evidence 4 Homologs of previously reported genes of
AT984_RS19960	COG0840	transmembrane signaling receptor activity
AT984_RS19965	COG0668	transmembrane transport
AT984_RS19970	COG3179	chitinase
AT984_RS20020	COG2329	Antibiotic biosynthesis monooxygenase
AT984_RS20035	COG1280	lysine exporter protein (LysE YggA)
AT984_RS20055	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AT984_RS20085	COG0386	Belongs to the glutathione peroxidase family
AT984_RS20110	COG1649	PFAM Uncharacterised BCR, COG1649
AT984_RS20120	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
AT984_RS20145	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AT984_RS20160	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AT984_RS20165	COG0154	amidase activity
AT984_RS20170	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AT984_RS20190	COG0789	Transcriptional regulator
AT984_RS20210	COG1247	-acetyltransferase
AT984_RS20215	COG0625	glutathione transferase activity
AT984_RS20225	COG1022	Amp-dependent synthetase and ligase
AT984_RS20260	COG1396	sequence-specific DNA binding
AT984_RS20270	COG3842	ATPase activity
AT984_RS20275	COG4149	molybdate abc transporter
AT984_RS20280	COG0725	ABC transporter, periplasmic molybdate-binding protein
AT984_RS20285	COG0387	Pfam Sodium calcium exchanger
AT984_RS20295	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
AT984_RS20295	COG3608	succinylglutamate desuccinylase aspartoacylase
AT984_RS20330	COG2963	transposase activity
AT984_RS20390	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT984_RS20400	COG0829	nickel cation binding
AT984_RS20440	COG2326	polyphosphate kinase activity
AT984_RS20455	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT984_RS20465	COG0784	Response regulator, receiver
AT984_RS20465	COG2198	Histidine kinase
AT984_RS20465	COG5002	protein histidine kinase activity
AT984_RS20470	COG0831	urea catabolic process
AT984_RS20480	COG0832	Belongs to the urease beta subunit family
AT984_RS20485	COG0804	urea catabolic process
AT984_RS20490	COG0454	-acetyltransferase
AT984_RS20495	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
AT984_RS20500	COG0830	nickel cation binding
AT984_RS20505	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
AT984_RS20525	COG2119	membrane
AT984_RS20535	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT984_RS20535	COG2205	protein histidine kinase activity
AT984_RS20545	COG4206	TonB-dependent receptor
AT984_RS20550	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AT984_RS20580	COG1464	Belongs to the NlpA lipoprotein family
AT984_RS20585	COG2011	ABC-type metal ion transport system permease component
AT984_RS20600	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT984_RS20630	COG1524	type I phosphodiesterase nucleotide pyrophosphatase
AT984_RS20640	COG1272	protein, Hemolysin III
AT984_RS20655	COG2321	neutral zinc metallopeptidase
AT984_RS20670	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AT984_RS20680	COG1183	phosphatidylcholine synthase activity
AT984_RS20690	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT984_RS20695	COG0697	spore germination
AT984_RS20705	COG0247	lactate metabolic process
AT984_RS20715	COG0277	FAD linked oxidase domain protein
AT984_RS20720	COG0277	FAD linked oxidase domain protein
AT984_RS20740	COG0004	ammonium transporteR
AT984_RS20770	COG2963	transposase activity
AT984_RS20800	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AT984_RS20850	COG2963	transposase activity
AT984_RS20860	COG4584	PFAM Integrase catalytic
AT984_RS20865	COG1484	DNA-dependent DNA replication
AT984_RS20875	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AT984_RS20890	COG4584	PFAM Integrase catalytic
AT984_RS20895	COG1484	DNA-dependent DNA replication
AT984_RS20915	COG0606	chelatase, subunit chli
AT984_RS20930	COG0646	methionine synthase
AT984_RS20930	COG1410	methionine synthase
AT984_RS20975	COG0745	RESPONSE REGULATOR receiver
AT984_RS20985	COG0583	DNA-binding transcription factor activity
AT984_RS21000	COG3158	transport of potassium into the cell
AT984_RS21005	COG3158	transport of potassium into the cell
AT984_RS21015	COG3135	benzoate transporter
AT984_RS21020	COG0189	ligase activity
AT984_RS21060	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AT984_RS21065	COG0612	Peptidase, M16
AT984_RS21095	COG0488	(ABC) transporter
AT984_RS21110	COG0436	Aminotransferase
AT984_RS21120	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT984_RS21125	COG0384	phenazine biosynthesis protein PhzF
AT984_RS21130	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AT984_RS21150	COG0356	it plays a direct role in the translocation of protons across the membrane
AT984_RS21160	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AT984_RS21165	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AT984_RS21170	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AT984_RS21175	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AT984_RS21180	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AT984_RS21185	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AT984_RS21195	COG2326	polyphosphate kinase activity
AT984_RS21210	COG1704	LemA family
AT984_RS21215	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AT984_RS21220	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AT984_RS21230	COG2201	protein-glutamate methylesterase activity
AT984_RS21240	COG2205	protein histidine kinase activity
AT984_RS21255	COG0210	DNA helicase
AT984_RS21265	COG3706	GGDEF domain
AT984_RS21265	COG4251	negative regulation of phosphorylation
AT984_RS21265	COG2203	Gaf domain
AT984_RS21265	COG5001	Diguanylate cyclase
AT984_RS21270	COG3279	Response regulator of the LytR AlgR family
AT984_RS21280	COG3275	phosphorelay sensor kinase activity
AT984_RS21295	COG3038	cytochrome b561
AT984_RS21305	COG0784	Response regulator, receiver
AT984_RS21305	COG5002	protein histidine kinase activity
AT984_RS21320	COG0612	Peptidase, M16
AT984_RS21325	COG2990	Protein conserved in bacteria
AT984_RS21335	COG2814	Major facilitator Superfamily
AT984_RS21345	COG1522	sequence-specific DNA binding
AT984_RS21365	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AT984_RS21370	COG0438	transferase activity, transferring glycosyl groups
AT984_RS21385	COG0745	RESPONSE REGULATOR receiver
AT984_RS21390	COG1283	sodium-dependent phosphate transmembrane transporter activity
AT984_RS21415	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AT984_RS21420	COG1858	cytochrome C peroxidase
AT984_RS21445	COG1803	Methylglyoxal synthase
AT984_RS21450	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
AT984_RS21475	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
AT984_RS21485	COG2967	ApaG domain
AT984_RS21490	COG2818	Glycosylase
AT984_RS21500	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AT984_RS21505	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AT984_RS21525	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT984_RS21530	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT984_RS21535	COG2313	pseudouridylate synthase activity
AT984_RS21540	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT984_RS21545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT984_RS21630	COG3043	anaerobic respiration
AT984_RS21635	COG3005	denitrification pathway
AT984_RS21640	COG0786	glutamate:sodium symporter activity
AT984_RS21660	COG0512	Glutamine amidotransferase of anthranilate synthase
AT984_RS21670	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AT984_RS21680	COG0134	indole-3-glycerol-phosphate synthase activity
AT984_RS21690	COG2971	BadF BadG BcrA BcrD
AT984_RS21695	COG2188	Transcriptional regulator
AT984_RS21700	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AT984_RS21705	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AT984_RS21710	COG1472	Belongs to the glycosyl hydrolase 3 family
AT984_RS21760	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AT984_RS21780	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AT984_RS21785	COG0081	regulation of translation
AT984_RS21790	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AT984_RS21795	COG0222	ribosome binding
AT984_RS21800	COG0085	RNA polymerase activity
AT984_RS21805	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AT984_RS21820	COG2433	Pfam Transposase IS66
AT984_RS21830	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AT984_RS21835	COG0049	tRNA binding
AT984_RS21840	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AT984_RS21845	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AT984_RS21850	COG0051	transcription antitermination factor activity, RNA binding
AT984_RS21855	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AT984_RS21860	COG0088	Forms part of the polypeptide exit tunnel
AT984_RS21865	COG0089	rRNA binding
AT984_RS21870	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AT984_RS21875	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AT984_RS21880	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AT984_RS21885	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AT984_RS21890	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AT984_RS21895	COG0255	Belongs to the universal ribosomal protein uL29 family
AT984_RS21900	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AT984_RS21905	COG0678	peroxiredoxin activity
AT984_RS21910	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AT984_RS21915	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AT984_RS21920	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AT984_RS21925	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AT984_RS21930	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AT984_RS21935	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AT984_RS21940	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AT984_RS21945	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AT984_RS21950	COG1841	ribosomal large subunit assembly
AT984_RS21955	COG0200	Binds to the 23S rRNA
AT984_RS21960	COG0201	protein transport
AT984_RS21970	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AT984_RS21975	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AT984_RS21980	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AT984_RS21985	COG0202	RNA polymerase activity
AT984_RS21990	COG0203	ribosomal protein L17
AT984_RS21995	COG4232	protein-disulfide reductase activity
AT984_RS22015	COG2130	NADP-dependent
AT984_RS22020	COG1979	alcohol dehydrogenase
AT984_RS22025	COG1309	transcriptional regulator
AT984_RS22030	COG0673	inositol 2-dehydrogenase activity
AT984_RS22035	COG2255	four-way junction helicase activity
AT984_RS22040	COG0632	four-way junction helicase activity
AT984_RS22045	COG2197	response regulator
AT984_RS22055	COG1702	phosphate starvation-inducible protein PhoH
AT984_RS22060	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AT984_RS22065	COG0598	Magnesium transport protein CorA
AT984_RS22075	COG1981	membrane
AT984_RS22090	COG2945	thiolester hydrolase activity
AT984_RS22095	COG1686	Belongs to the peptidase S11 family
AT984_RS22105	COG2921	Belongs to the UPF0250 family
AT984_RS22115	COG0321	lipoyl(octanoyl) transferase activity
AT984_RS22120	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AT984_RS22125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AT984_RS22135	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AT984_RS22150	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT984_RS22160	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)