PPHA_RS00055	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
PPHA_RS00175	PWY-5278	sulfite oxidation III
PPHA_RS00175	PWY-5279	sulfite oxidation II
PPHA_RS00185	PWY-5278	sulfite oxidation III
PPHA_RS00185	PWY-5340	sulfate activation for sulfonation
PPHA_RS00185	PWY-6683	sulfate reduction III (assimilatory)
PPHA_RS00185	PWY-6932	selenate reduction
PPHA_RS00225	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS00240	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PPHA_RS00355	PWY-1341	phenylacetate degradation II (anaerobic)
PPHA_RS00355	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
PPHA_RS00355	PWY-7716	PPHA_RS00355
PPHA_RS00395	PWY-7294	xylose degradation IV
PPHA_RS00395	PWY-7295	L-arabinose degradation IV
PPHA_RS00395	PWY-7560	methylerythritol phosphate pathway II
PPHA_RS00410	PWY-5686	UMP biosynthesis
PPHA_RS00415	PWY-6749	CMP-legionaminate biosynthesis I
PPHA_RS00455	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
PPHA_RS00455	PWY-5368	dimorphecolate biosynthesis
PPHA_RS00455	PWY-5995	linoleate biosynthesis I (plants)
PPHA_RS00455	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
PPHA_RS00455	PWY-6803	phosphatidylcholine acyl editing
PPHA_RS00455	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
PPHA_RS00455	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
PPHA_RS00455	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
PPHA_RS00455	PWY-7470	phosphatidylcholine biosynthesis VII
PPHA_RS00455	PWY-7618	ricinoleate biosynthesis
PPHA_RS00485	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
PPHA_RS00485	PWY-7177	UTP and CTP dephosphorylation II
PPHA_RS00485	PWY-7185	UTP and CTP dephosphorylation I
PPHA_RS00520	PWY-5506	methanol oxidation to formaldehyde IV
PPHA_RS00540	PWY-7158	L-phenylalanine degradation V
PPHA_RS00905	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
PPHA_RS00905	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS00905	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS01015	PWY-5367	petroselinate biosynthesis
PPHA_RS01015	PWY-5515	L-arabinose degradation II
PPHA_RS01015	PWY-5525	D-glucuronate degradation I
PPHA_RS01015	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PPHA_RS01015	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PPHA_RS01015	PWY-5989	stearate biosynthesis II (bacteria and plants)
PPHA_RS01015	PWY-5994	palmitate biosynthesis I (animals and fungi)
PPHA_RS01015	PWY-6113	superpathway of mycolate biosynthesis
PPHA_RS01015	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PPHA_RS01015	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PPHA_RS01015	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PPHA_RS01015	PWY-7663	gondoate biosynthesis (anaerobic)
PPHA_RS01015	PWY-7664	oleate biosynthesis IV (anaerobic)
PPHA_RS01015	PWYG-321	mycolate biosynthesis
PPHA_RS01020	PWY-4381	fatty acid biosynthesis initiation I
PPHA_RS01020	PWY-6799	fatty acid biosynthesis (plant mitochondria)
PPHA_RS01020	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PPHA_RS01025	PWY-4381	fatty acid biosynthesis initiation I
PPHA_RS01045	PWY-6871	3-methylbutanol biosynthesis
PPHA_RS01080	PWY-3341	L-proline biosynthesis III
PPHA_RS01080	PWY-4981	L-proline biosynthesis II (from arginine)
PPHA_RS01080	PWY-6344	L-ornithine degradation II (Stickland reaction)
PPHA_RS01110	PWY-6832	2-aminoethylphosphonate degradation II
PPHA_RS01115	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS01115	PWY-5686	UMP biosynthesis
PPHA_RS01115	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS01125	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
PPHA_RS01125	PWY-5368	dimorphecolate biosynthesis
PPHA_RS01125	PWY-5995	linoleate biosynthesis I (plants)
PPHA_RS01125	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
PPHA_RS01125	PWY-6803	phosphatidylcholine acyl editing
PPHA_RS01125	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
PPHA_RS01125	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
PPHA_RS01125	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
PPHA_RS01125	PWY-7470	phosphatidylcholine biosynthesis VII
PPHA_RS01125	PWY-7618	ricinoleate biosynthesis
PPHA_RS01635	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS01645	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS01645	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS01650	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS01650	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS01655	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS01655	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS01675	PWY-622	starch biosynthesis
PPHA_RS01710	PWY-2201	folate transformations I
PPHA_RS01720	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PPHA_RS01720	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
PPHA_RS01720	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PPHA_RS01720	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS01720	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
PPHA_RS01720	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PPHA_RS01720	PWY-7205	CMP phosphorylation
PPHA_RS01720	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PPHA_RS01720	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS01720	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS01720	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS01720	PWY-7224	purine deoxyribonucleosides salvage
PPHA_RS01720	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PPHA_RS01720	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PPHA_RS01750	PWY-6825	phosphatidylcholine biosynthesis V
PPHA_RS01825	PWY-6823	molybdenum cofactor biosynthesis
PPHA_RS01825	PWY-6891	thiazole biosynthesis II (Bacillus)
PPHA_RS01825	PWY-6892	thiazole biosynthesis I (E. coli)
PPHA_RS01825	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
PPHA_RS01955	PWY-5667	CDP-diacylglycerol biosynthesis I
PPHA_RS01955	PWY-5981	CDP-diacylglycerol biosynthesis III
PPHA_RS02020	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS02030	PWY-5386	methylglyoxal degradation I
PPHA_RS02040	PWY-5155	&beta;-alanine biosynthesis III
PPHA_RS02070	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
PPHA_RS02070	PWY-6174	mevalonate pathway II (archaea)
PPHA_RS02070	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
PPHA_RS02070	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
PPHA_RS02070	PWY-7102	bisabolene biosynthesis
PPHA_RS02070	PWY-7391	isoprene biosynthesis II (engineered)
PPHA_RS02070	PWY-7524	mevalonate pathway III (archaea)
PPHA_RS02070	PWY-7560	methylerythritol phosphate pathway II
PPHA_RS02070	PWY-922	mevalonate pathway I
PPHA_RS02110	PWY-6749	CMP-legionaminate biosynthesis I
PPHA_RS02125	PWY-2161	folate polyglutamylation
PPHA_RS02130	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS02170	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PPHA_RS02175	PWY-5392	reductive TCA cycle II
PPHA_RS02175	PWY-5537	pyruvate fermentation to acetate V
PPHA_RS02175	PWY-5538	pyruvate fermentation to acetate VI
PPHA_RS02175	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS02175	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS02175	PWY-6728	methylaspartate cycle
PPHA_RS02175	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS02175	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PPHA_RS02210	PWY-6749	CMP-legionaminate biosynthesis I
PPHA_RS02215	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
PPHA_RS02215	PWY-622	starch biosynthesis
PPHA_RS02245	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PPHA_RS02245	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PPHA_RS02255	PWY-7205	CMP phosphorylation
PPHA_RS02300	PWY-6605	adenine and adenosine salvage II
PPHA_RS02300	PWY-6610	adenine and adenosine salvage IV
PPHA_RS02320	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PPHA_RS02335	PWY-101	photosynthesis light reactions
PPHA_RS02385	PWY-5381	pyridine nucleotide cycling (plants)
PPHA_RS02435	PWY-5839	menaquinol-7 biosynthesis
PPHA_RS02435	PWY-5844	menaquinol-9 biosynthesis
PPHA_RS02435	PWY-5849	menaquinol-6 biosynthesis
PPHA_RS02435	PWY-5890	menaquinol-10 biosynthesis
PPHA_RS02435	PWY-5891	menaquinol-11 biosynthesis
PPHA_RS02435	PWY-5892	menaquinol-12 biosynthesis
PPHA_RS02435	PWY-5895	menaquinol-13 biosynthesis
PPHA_RS02475	PWY-101	photosynthesis light reactions
PPHA_RS02475	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
PPHA_RS02520	PWY-5958	acridone alkaloid biosynthesis
PPHA_RS02520	PWY-6543	4-aminobenzoate biosynthesis
PPHA_RS02520	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PPHA_RS02520	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PPHA_RS02555	PWY-6614	tetrahydrofolate biosynthesis
PPHA_RS02635	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
PPHA_RS02635	PWY-6749	CMP-legionaminate biosynthesis I
PPHA_RS02635	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
PPHA_RS02635	PWY-7102	bisabolene biosynthesis
PPHA_RS02635	PWY-7131	CMP-legionaminate biosynthesis II
PPHA_RS02635	PWY-7721	PPHA_RS02635
PPHA_RS02635	PWY-7736	PPHA_RS02635
PPHA_RS02670	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PPHA_RS02775	PWY-3821	galactose degradation III
PPHA_RS02775	PWY-6317	galactose degradation I (Leloir pathway)
PPHA_RS02775	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
PPHA_RS02775	PWY-6527	stachyose degradation
PPHA_RS02775	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
PPHA_RS02775	PWY-7344	UDP-D-galactose biosynthesis
PPHA_RS02780	PWY-3801	sucrose degradation II (sucrose synthase)
PPHA_RS02780	PWY-5054	sorbitol biosynthesis I
PPHA_RS02780	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PPHA_RS02780	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PPHA_RS02780	PWY-5659	GDP-mannose biosynthesis
PPHA_RS02780	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PPHA_RS02780	PWY-621	sucrose degradation III (sucrose invertase)
PPHA_RS02780	PWY-622	starch biosynthesis
PPHA_RS02780	PWY-6981	chitin biosynthesis
PPHA_RS02780	PWY-6992	1,5-anhydrofructose degradation
PPHA_RS02780	PWY-7238	sucrose biosynthesis II
PPHA_RS02780	PWY-7347	sucrose biosynthesis III
PPHA_RS02780	PWY-7385	1,3-propanediol biosynthesis (engineered)
PPHA_RS02785	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
PPHA_RS02830	PWY-5481	pyruvate fermentation to lactate
PPHA_RS02830	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PPHA_RS02830	PWY-6901	superpathway of glucose and xylose degradation
PPHA_RS02835	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
PPHA_RS02835	PWY-5739	GDP-D-perosamine biosynthesis
PPHA_RS02835	PWY-5740	GDP-L-colitose biosynthesis
PPHA_RS02835	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PPHA_RS02835	PWY-7573	GDP-mycosamine biosynthesis
PPHA_RS02930	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
PPHA_RS02930	PWY-5739	GDP-D-perosamine biosynthesis
PPHA_RS02930	PWY-5740	GDP-L-colitose biosynthesis
PPHA_RS02930	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PPHA_RS02930	PWY-7573	GDP-mycosamine biosynthesis
PPHA_RS03115	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PPHA_RS03115	PWY-6549	L-glutamine biosynthesis III
PPHA_RS03115	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PPHA_RS03115	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PPHA_RS03200	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PPHA_RS03200	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PPHA_RS03200	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PPHA_RS03210	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS03210	PWY-5686	UMP biosynthesis
PPHA_RS03210	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS03220	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PPHA_RS03220	PWY-5723	Rubisco shunt
PPHA_RS03245	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
PPHA_RS03260	PWY-5269	cardiolipin biosynthesis II
PPHA_RS03260	PWY-5668	cardiolipin biosynthesis I
PPHA_RS03265	PWY-2201	folate transformations I
PPHA_RS03265	PWY-5497	purine nucleobases degradation II (anaerobic)
PPHA_RS03265	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PPHA_RS03265	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PPHA_RS03265	PWY-5989	stearate biosynthesis II (bacteria and plants)
PPHA_RS03265	PWY-5994	palmitate biosynthesis I (animals and fungi)
PPHA_RS03265	PWY-6113	superpathway of mycolate biosynthesis
PPHA_RS03265	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PPHA_RS03265	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PPHA_RS03265	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PPHA_RS03265	PWY-7663	gondoate biosynthesis (anaerobic)
PPHA_RS03265	PWY-7664	oleate biosynthesis IV (anaerobic)
PPHA_RS03265	PWYG-321	mycolate biosynthesis
PPHA_RS03270	PWY-2301	<i>myo</i>-inositol biosynthesis
PPHA_RS03270	PWY-4702	phytate degradation I
PPHA_RS03270	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
PPHA_RS03285	PWY-6672	<i>cis</i>-genanyl-CoA degradation
PPHA_RS03285	PWY-7118	chitin degradation to ethanol
PPHA_RS03305	PWY-2201	folate transformations I
PPHA_RS03335	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS03335	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS03365	PWY-1622	formaldehyde assimilation I (serine pathway)
PPHA_RS03365	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PPHA_RS03365	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS03365	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PPHA_RS03365	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
PPHA_RS03365	PWY-6549	L-glutamine biosynthesis III
PPHA_RS03365	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PPHA_RS03365	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PPHA_RS03365	PWY-7124	ethylene biosynthesis V (engineered)
PPHA_RS03375	PWY-6700	queuosine biosynthesis
PPHA_RS03445	PWY-2941	L-lysine biosynthesis II
PPHA_RS03445	PWY-2942	L-lysine biosynthesis III
PPHA_RS03445	PWY-5097	L-lysine biosynthesis VI
PPHA_RS03465	PWY-5669	phosphatidylethanolamine biosynthesis I
PPHA_RS03535	PWY-5057	L-valine degradation II
PPHA_RS03535	PWY-5076	L-leucine degradation III
PPHA_RS03535	PWY-5078	L-isoleucine degradation II
PPHA_RS03535	PWY-5101	L-isoleucine biosynthesis II
PPHA_RS03535	PWY-5103	L-isoleucine biosynthesis III
PPHA_RS03535	PWY-5104	L-isoleucine biosynthesis IV
PPHA_RS03535	PWY-5108	L-isoleucine biosynthesis V
PPHA_RS03540	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS03540	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PPHA_RS03540	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS03540	PWY-7385	1,3-propanediol biosynthesis (engineered)
PPHA_RS03550	PWY-7560	methylerythritol phosphate pathway II
PPHA_RS03565	PWY-5941	glycogen degradation II (eukaryotic)
PPHA_RS03565	PWY-6731	starch degradation III
PPHA_RS03565	PWY-6737	starch degradation V
PPHA_RS03565	PWY-7238	sucrose biosynthesis II
PPHA_RS03580	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS03580	PWY-5686	UMP biosynthesis
PPHA_RS03580	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS03585	PWY-6167	flavin biosynthesis II (archaea)
PPHA_RS03585	PWY-6168	flavin biosynthesis III (fungi)
PPHA_RS03585	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PPHA_RS03590	PWY-1622	formaldehyde assimilation I (serine pathway)
PPHA_RS03590	PWY-181	photorespiration
PPHA_RS03590	PWY-2161	folate polyglutamylation
PPHA_RS03590	PWY-2201	folate transformations I
PPHA_RS03590	PWY-3661	glycine betaine degradation I
PPHA_RS03590	PWY-3661-1	glycine betaine degradation II (mammalian)
PPHA_RS03590	PWY-3841	folate transformations II
PPHA_RS03590	PWY-5497	purine nucleobases degradation II (anaerobic)
PPHA_RS03650	PWY-6123	inosine-5'-phosphate biosynthesis I
PPHA_RS03650	PWY-7234	inosine-5'-phosphate biosynthesis III
PPHA_RS03825	PWY-5392	reductive TCA cycle II
PPHA_RS03825	PWY-5537	pyruvate fermentation to acetate V
PPHA_RS03825	PWY-5538	pyruvate fermentation to acetate VI
PPHA_RS03825	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS03825	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS03825	PWY-6728	methylaspartate cycle
PPHA_RS03825	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS03825	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PPHA_RS03840	PWY-723	alkylnitronates degradation
PPHA_RS03845	PWY-1622	formaldehyde assimilation I (serine pathway)
PPHA_RS03845	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS03995	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
PPHA_RS04125	PWY-6703	preQ<sub>0</sub> biosynthesis
PPHA_RS04190	PWY-6700	queuosine biosynthesis
PPHA_RS04195	PWY-5747	2-methylcitrate cycle II
PPHA_RS04230	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PPHA_RS04230	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PPHA_RS04250	PWY-5316	nicotine biosynthesis
PPHA_RS04250	PWY-7342	superpathway of nicotine biosynthesis
PPHA_RS04260	PWY-40	putrescine biosynthesis I
PPHA_RS04260	PWY-43	putrescine biosynthesis II
PPHA_RS04260	PWY-6305	putrescine biosynthesis IV
PPHA_RS04260	PWY-6834	spermidine biosynthesis III
PPHA_RS04300	PWY-5316	nicotine biosynthesis
PPHA_RS04300	PWY-7342	superpathway of nicotine biosynthesis
PPHA_RS04315	PWY-4381	fatty acid biosynthesis initiation I
PPHA_RS04335	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PPHA_RS04335	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PPHA_RS04335	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PPHA_RS04335	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PPHA_RS04335	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS04335	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS04335	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PPHA_RS04335	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PPHA_RS04360	PWY-40	putrescine biosynthesis I
PPHA_RS04360	PWY-43	putrescine biosynthesis II
PPHA_RS04360	PWY-6305	putrescine biosynthesis IV
PPHA_RS04360	PWY-6834	spermidine biosynthesis III
PPHA_RS04495	PWY-7294	xylose degradation IV
PPHA_RS04495	PWY-7295	L-arabinose degradation IV
PPHA_RS04540	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
PPHA_RS04540	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PPHA_RS04565	PWY-6936	seleno-amino acid biosynthesis
PPHA_RS04570	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
PPHA_RS04605	PWY-6825	phosphatidylcholine biosynthesis V
PPHA_RS04610	PWY-5344	L-homocysteine biosynthesis
PPHA_RS04610	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
PPHA_RS04615	PWY-5344	L-homocysteine biosynthesis
PPHA_RS04620	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
PPHA_RS04665	PWY-6936	seleno-amino acid biosynthesis
PPHA_RS04665	PWY-7274	D-cycloserine biosynthesis
PPHA_RS04670	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PPHA_RS04675	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PPHA_RS04675	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PPHA_RS04680	PWY-6339	syringate degradation
PPHA_RS04690	PWY-6339	syringate degradation
PPHA_RS04695	PWY-4381	fatty acid biosynthesis initiation I
PPHA_RS04695	PWY-5743	3-hydroxypropanoate cycle
PPHA_RS04695	PWY-5744	glyoxylate assimilation
PPHA_RS04695	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PPHA_RS04695	PWY-6679	jadomycin biosynthesis
PPHA_RS04695	PWY-6722	candicidin biosynthesis
PPHA_RS04695	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PPHA_RS04705	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PPHA_RS04705	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PPHA_RS04710	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PPHA_RS04710	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PPHA_RS04715	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PPHA_RS04850	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
PPHA_RS05015	PWY-6936	seleno-amino acid biosynthesis
PPHA_RS05015	PWY-7274	D-cycloserine biosynthesis
PPHA_RS05050	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
PPHA_RS05050	PWY-622	starch biosynthesis
PPHA_RS05070	PWY-101	photosynthesis light reactions
PPHA_RS05070	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
PPHA_RS05075	PWY-5839	menaquinol-7 biosynthesis
PPHA_RS05075	PWY-5851	demethylmenaquinol-9 biosynthesis
PPHA_RS05075	PWY-5852	demethylmenaquinol-8 biosynthesis I
PPHA_RS05075	PWY-5853	demethylmenaquinol-6 biosynthesis I
PPHA_RS05075	PWY-5890	menaquinol-10 biosynthesis
PPHA_RS05075	PWY-5891	menaquinol-11 biosynthesis
PPHA_RS05075	PWY-5892	menaquinol-12 biosynthesis
PPHA_RS05075	PWY-5895	menaquinol-13 biosynthesis
PPHA_RS05090	PWY-43	putrescine biosynthesis II
PPHA_RS05095	PWY-1622	formaldehyde assimilation I (serine pathway)
PPHA_RS05095	PWY-5392	reductive TCA cycle II
PPHA_RS05095	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PPHA_RS05095	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS05095	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS05095	PWY-6728	methylaspartate cycle
PPHA_RS05095	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS05095	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PPHA_RS05095	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PPHA_RS05260	PWY-7560	methylerythritol phosphate pathway II
PPHA_RS05405	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS05405	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS05405	PWY-6901	superpathway of glucose and xylose degradation
PPHA_RS05405	PWY-7003	glycerol degradation to butanol
PPHA_RS05450	PWY-3341	L-proline biosynthesis III
PPHA_RS05450	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PPHA_RS05455	PWY-3341	L-proline biosynthesis III
PPHA_RS05455	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PPHA_RS05780	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
PPHA_RS05830	PWY-4381	fatty acid biosynthesis initiation I
PPHA_RS05830	PWY-5743	3-hydroxypropanoate cycle
PPHA_RS05830	PWY-5744	glyoxylate assimilation
PPHA_RS05830	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PPHA_RS05830	PWY-6679	jadomycin biosynthesis
PPHA_RS05830	PWY-6722	candicidin biosynthesis
PPHA_RS05830	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PPHA_RS05835	PWY-5741	ethylmalonyl-CoA pathway
PPHA_RS05835	PWY-5743	3-hydroxypropanoate cycle
PPHA_RS05835	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PPHA_RS05835	PWY-6728	methylaspartate cycle
PPHA_RS05835	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PPHA_RS05840	PWY-6672	<i>cis</i>-genanyl-CoA degradation
PPHA_RS05840	PWY-7118	chitin degradation to ethanol
PPHA_RS05925	PWY-6123	inosine-5'-phosphate biosynthesis I
PPHA_RS05925	PWY-6124	inosine-5'-phosphate biosynthesis II
PPHA_RS05925	PWY-7234	inosine-5'-phosphate biosynthesis III
PPHA_RS05935	PWY-6891	thiazole biosynthesis II (Bacillus)
PPHA_RS05935	PWY-6892	thiazole biosynthesis I (E. coli)
PPHA_RS05935	PWY-7560	methylerythritol phosphate pathway II
PPHA_RS05940	PWY-6825	phosphatidylcholine biosynthesis V
PPHA_RS05990	PWY-2781	<i>cis</i>-zeatin biosynthesis
PPHA_RS06010	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
PPHA_RS06010	PWY-2201	folate transformations I
PPHA_RS06010	PWY-3841	folate transformations II
PPHA_RS06010	PWY-5030	L-histidine degradation III
PPHA_RS06010	PWY-5497	purine nucleobases degradation II (anaerobic)
PPHA_RS06010	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PPHA_RS06035	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PPHA_RS06035	PWY-6416	quinate degradation II
PPHA_RS06035	PWY-6707	gallate biosynthesis
PPHA_RS06045	PWY-6123	inosine-5'-phosphate biosynthesis I
PPHA_RS06045	PWY-6124	inosine-5'-phosphate biosynthesis II
PPHA_RS06045	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS06045	PWY-7234	inosine-5'-phosphate biosynthesis III
PPHA_RS06285	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PPHA_RS06285	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
PPHA_RS06295	PWY-5443	aminopropanol phosphate biosynthesis I
PPHA_RS06305	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PPHA_RS06305	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PPHA_RS06305	PWY-6268	adenosylcobalamin salvage from cobalamin
PPHA_RS06305	PWY-6269	adenosylcobalamin salvage from cobinamide II
PPHA_RS06435	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PPHA_RS06435	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PPHA_RS06435	PWY-6269	adenosylcobalamin salvage from cobinamide II
PPHA_RS06440	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PPHA_RS06440	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PPHA_RS06440	PWY-6269	adenosylcobalamin salvage from cobinamide II
PPHA_RS06445	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PPHA_RS06445	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PPHA_RS06445	PWY-6269	adenosylcobalamin salvage from cobinamide II
PPHA_RS06475	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PPHA_RS06475	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PPHA_RS06515	PWY-6938	NADH repair
PPHA_RS06520	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PPHA_RS06520	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PPHA_RS06520	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PPHA_RS06550	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PPHA_RS06550	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PPHA_RS06625	PWY-6823	molybdenum cofactor biosynthesis
PPHA_RS06665	PWY-6823	molybdenum cofactor biosynthesis
PPHA_RS06740	PWY-5686	UMP biosynthesis
PPHA_RS06770	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS06770	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PPHA_RS06770	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS06770	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PPHA_RS06770	PWY-7385	1,3-propanediol biosynthesis (engineered)
PPHA_RS06790	PWY-4983	L-citrulline-nitric oxide cycle
PPHA_RS06790	PWY-4984	urea cycle
PPHA_RS06790	PWY-5	canavanine biosynthesis
PPHA_RS06790	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS06790	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS06845	PWY-4983	L-citrulline-nitric oxide cycle
PPHA_RS06845	PWY-4984	urea cycle
PPHA_RS06845	PWY-5	canavanine biosynthesis
PPHA_RS06845	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS06845	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS06855	PWY-4981	L-proline biosynthesis II (from arginine)
PPHA_RS06855	PWY-4984	urea cycle
PPHA_RS06855	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS06860	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS06860	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS06865	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS06870	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS06870	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS06910	PWY-5172	acetyl-CoA biosynthesis III (from citrate)
PPHA_RS06910	PWY-5392	reductive TCA cycle II
PPHA_RS06910	PWY-5537	pyruvate fermentation to acetate V
PPHA_RS06910	PWY-5538	pyruvate fermentation to acetate VI
PPHA_RS06910	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS06910	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS06910	PWY-6728	methylaspartate cycle
PPHA_RS06910	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS06910	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PPHA_RS06915	PWY-5392	reductive TCA cycle II
PPHA_RS06915	PWY-5537	pyruvate fermentation to acetate V
PPHA_RS06915	PWY-5538	pyruvate fermentation to acetate VI
PPHA_RS06915	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS06915	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS06915	PWY-6728	methylaspartate cycle
PPHA_RS06915	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS06915	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PPHA_RS07235	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS07235	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PPHA_RS07235	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS07235	PWY-7385	1,3-propanediol biosynthesis (engineered)
PPHA_RS07355	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PPHA_RS07390	PWY-6829	tRNA methylation (yeast)
PPHA_RS07390	PWY-7285	methylwyosine biosynthesis
PPHA_RS07390	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
PPHA_RS07435	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PPHA_RS07435	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PPHA_RS07435	PWY-6897	thiamin salvage II
PPHA_RS07435	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PPHA_RS07435	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PPHA_RS07435	PWY-7356	thiamin salvage IV (yeast)
PPHA_RS07435	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PPHA_RS07440	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PPHA_RS07440	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PPHA_RS07440	PWY-6897	thiamin salvage II
PPHA_RS07440	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PPHA_RS07440	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PPHA_RS07440	PWY-7356	thiamin salvage IV (yeast)
PPHA_RS07440	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PPHA_RS07445	PWY-6910	hydroxymethylpyrimidine salvage
PPHA_RS07445	PWY-7356	thiamin salvage IV (yeast)
PPHA_RS07445	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PPHA_RS07450	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
PPHA_RS07480	PWY-2201	folate transformations I
PPHA_RS07490	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS07510	PWY-3801	sucrose degradation II (sucrose synthase)
PPHA_RS07510	PWY-5054	sorbitol biosynthesis I
PPHA_RS07510	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PPHA_RS07510	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PPHA_RS07510	PWY-5659	GDP-mannose biosynthesis
PPHA_RS07510	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PPHA_RS07510	PWY-621	sucrose degradation III (sucrose invertase)
PPHA_RS07510	PWY-622	starch biosynthesis
PPHA_RS07510	PWY-6981	chitin biosynthesis
PPHA_RS07510	PWY-6992	1,5-anhydrofructose degradation
PPHA_RS07510	PWY-7238	sucrose biosynthesis II
PPHA_RS07510	PWY-7347	sucrose biosynthesis III
PPHA_RS07510	PWY-7385	1,3-propanediol biosynthesis (engineered)
PPHA_RS07530	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PPHA_RS07530	PWY-6164	3-dehydroquinate biosynthesis I
PPHA_RS07530	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PPHA_RS07555	PWY-5941	glycogen degradation II (eukaryotic)
PPHA_RS07555	PWY-6724	starch degradation II
PPHA_RS07555	PWY-6737	starch degradation V
PPHA_RS07555	PWY-7238	sucrose biosynthesis II
PPHA_RS07625	PWY-6854	ethylene biosynthesis III (microbes)
PPHA_RS07770	PWY-5392	reductive TCA cycle II
PPHA_RS07770	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PPHA_RS07770	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS07770	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS07770	PWY-6728	methylaspartate cycle
PPHA_RS07770	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS07770	PWY-7254	TCA cycle VII (acetate-producers)
PPHA_RS07770	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PPHA_RS07800	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PPHA_RS07800	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PPHA_RS07970	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PPHA_RS07970	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PPHA_RS07970	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS07970	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
PPHA_RS07970	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PPHA_RS07970	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PPHA_RS07985	PWY-6700	queuosine biosynthesis
PPHA_RS07990	PWY-7560	methylerythritol phosphate pathway II
PPHA_RS08045	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PPHA_RS08045	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PPHA_RS08045	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PPHA_RS08050	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PPHA_RS08050	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PPHA_RS08050	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PPHA_RS08055	PWY-5669	phosphatidylethanolamine biosynthesis I
PPHA_RS08060	PWY-6654	phosphopantothenate biosynthesis III
PPHA_RS08075	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PPHA_RS08075	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PPHA_RS08155	PWY-2201	folate transformations I
PPHA_RS08155	PWY-3841	folate transformations II
PPHA_RS08160	PWY-2941	L-lysine biosynthesis II
PPHA_RS08160	PWY-2942	L-lysine biosynthesis III
PPHA_RS08160	PWY-5097	L-lysine biosynthesis VI
PPHA_RS08395	PWY-40	putrescine biosynthesis I
PPHA_RS08395	PWY-43	putrescine biosynthesis II
PPHA_RS08395	PWY-6305	putrescine biosynthesis IV
PPHA_RS08395	PWY-6834	spermidine biosynthesis III
PPHA_RS08415	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PPHA_RS08415	PWY-5491	diethylphosphate degradation
PPHA_RS08645	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PPHA_RS08685	PWY-6700	queuosine biosynthesis
PPHA_RS08720	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PPHA_RS08725	PWY-6164	3-dehydroquinate biosynthesis I
PPHA_RS08730	PWY-3961	phosphopantothenate biosynthesis II
PPHA_RS08740	PWY-381	nitrate reduction II (assimilatory)
PPHA_RS08740	PWY-5675	nitrate reduction V (assimilatory)
PPHA_RS08740	PWY-6549	L-glutamine biosynthesis III
PPHA_RS08740	PWY-6963	ammonia assimilation cycle I
PPHA_RS08740	PWY-6964	ammonia assimilation cycle II
PPHA_RS08770	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PPHA_RS08770	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PPHA_RS08770	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS08770	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
PPHA_RS08795	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
PPHA_RS08800	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS08800	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS08800	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PPHA_RS08800	PWY-7003	glycerol degradation to butanol
PPHA_RS08820	PWY-5958	acridone alkaloid biosynthesis
PPHA_RS08820	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PPHA_RS08820	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PPHA_RS08870	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PPHA_RS08870	PWY-6596	adenosine nucleotides degradation I
PPHA_RS08870	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS08890	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS08890	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS08895	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS08895	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS08900	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS08900	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS08905	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PPHA_RS08905	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PPHA_RS09080	PWY-6840	homoglutathione biosynthesis
PPHA_RS09080	PWY-7255	ergothioneine biosynthesis I (bacteria)
PPHA_RS09175	PWY-5663	tetrahydrobiopterin biosynthesis I
PPHA_RS09175	PWY-5664	tetrahydrobiopterin biosynthesis II
PPHA_RS09175	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PPHA_RS09175	PWY-6703	preQ<sub>0</sub> biosynthesis
PPHA_RS09175	PWY-6983	tetrahydrobiopterin biosynthesis III
PPHA_RS09175	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PPHA_RS09325	PWY-6167	flavin biosynthesis II (archaea)
PPHA_RS09325	PWY-6168	flavin biosynthesis III (fungi)
PPHA_RS09325	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS09345	PWY-5525	D-glucuronate degradation I
PPHA_RS09350	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PPHA_RS09480	PWY-5482	pyruvate fermentation to acetate II
PPHA_RS09480	PWY-5485	pyruvate fermentation to acetate IV
PPHA_RS09480	PWY-5497	purine nucleobases degradation II (anaerobic)
PPHA_RS09510	PWY-3081	L-lysine biosynthesis V
PPHA_RS09510	PWY-6871	3-methylbutanol biosynthesis
PPHA_RS09510	PWY-7710	PPHA_RS09510
PPHA_RS09690	PWY-6823	molybdenum cofactor biosynthesis
PPHA_RS09915	PWY-6936	seleno-amino acid biosynthesis
PPHA_RS09930	PWY-6891	thiazole biosynthesis II (Bacillus)
PPHA_RS09930	PWY-6892	thiazole biosynthesis I (E. coli)
PPHA_RS09935	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PPHA_RS09965	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PPHA_RS09970	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PPHA_RS09975	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PPHA_RS09975	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PPHA_RS10015	PWY-6454	vancomycin resistance I
PPHA_RS10015	PWY-6455	vancomycin resistance II
PPHA_RS10185	PWY-5686	UMP biosynthesis
PPHA_RS10230	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PPHA_RS10255	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PPHA_RS10260	PWY-4202	arsenate detoxification I (glutaredoxin)
PPHA_RS10260	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PPHA_RS10260	PWY-6608	guanosine nucleotides degradation III
PPHA_RS10260	PWY-6609	adenine and adenosine salvage III
PPHA_RS10260	PWY-6611	adenine and adenosine salvage V
PPHA_RS10260	PWY-6620	guanine and guanosine salvage
PPHA_RS10260	PWY-6627	salinosporamide A biosynthesis
PPHA_RS10260	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
PPHA_RS10260	PWY-7179	purine deoxyribonucleosides degradation I
PPHA_RS10260	PWY-7179-1	purine deoxyribonucleosides degradation
PPHA_RS10265	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
PPHA_RS10265	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
PPHA_RS10270	PWY-3781	aerobic respiration I (cytochrome c)
PPHA_RS10270	PWY-4521	arsenite oxidation I (respiratory)
PPHA_RS10270	PWY-6692	Fe(II) oxidation
PPHA_RS10270	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PPHA_RS10275	PWY-3781	aerobic respiration I (cytochrome c)
PPHA_RS10275	PWY-4521	arsenite oxidation I (respiratory)
PPHA_RS10275	PWY-6692	Fe(II) oxidation
PPHA_RS10275	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PPHA_RS10395	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PPHA_RS10395	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
PPHA_RS10400	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PPHA_RS10745	PWY-5101	L-isoleucine biosynthesis II
PPHA_RS10745	PWY-5103	L-isoleucine biosynthesis III
PPHA_RS10745	PWY-5104	L-isoleucine biosynthesis IV
PPHA_RS10745	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PPHA_RS10750	PWY-5101	L-isoleucine biosynthesis II
PPHA_RS10750	PWY-5103	L-isoleucine biosynthesis III
PPHA_RS10750	PWY-5104	L-isoleucine biosynthesis IV
PPHA_RS10750	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
PPHA_RS10750	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PPHA_RS10750	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PPHA_RS10750	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PPHA_RS10760	PWY-5101	L-isoleucine biosynthesis II
PPHA_RS10760	PWY-5103	L-isoleucine biosynthesis III
PPHA_RS10760	PWY-5104	L-isoleucine biosynthesis IV
PPHA_RS10760	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
PPHA_RS10760	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PPHA_RS10760	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PPHA_RS10760	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PPHA_RS10765	PWY-5103	L-isoleucine biosynthesis III
PPHA_RS10765	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PPHA_RS10770	PWY-7396	butanol and isobutanol biosynthesis (engineered)
PPHA_RS10775	PWY-6871	3-methylbutanol biosynthesis
PPHA_RS10790	PWY-5101	L-isoleucine biosynthesis II
PPHA_RS10790	PWY-6871	3-methylbutanol biosynthesis
PPHA_RS10870	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS10870	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS10885	PWY-2201	folate transformations I
PPHA_RS10885	PWY-5497	purine nucleobases degradation II (anaerobic)
PPHA_RS10925	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS10950	PWY-5913	TCA cycle VI (obligate autotrophs)
PPHA_RS10950	PWY-6549	L-glutamine biosynthesis III
PPHA_RS10950	PWY-6728	methylaspartate cycle
PPHA_RS10950	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS10950	PWY-7124	ethylene biosynthesis V (engineered)
PPHA_RS10950	PWY-7254	TCA cycle VII (acetate-producers)
PPHA_RS10950	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PPHA_RS10955	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PPHA_RS10955	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PPHA_RS10955	PWY-5989	stearate biosynthesis II (bacteria and plants)
PPHA_RS10955	PWY-6113	superpathway of mycolate biosynthesis
PPHA_RS10955	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PPHA_RS10955	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PPHA_RS10955	PWY-7663	gondoate biosynthesis (anaerobic)
PPHA_RS10955	PWY-7664	oleate biosynthesis IV (anaerobic)
PPHA_RS10955	PWYG-321	mycolate biosynthesis
PPHA_RS10995	PWY-6891	thiazole biosynthesis II (Bacillus)
PPHA_RS10995	PWY-6892	thiazole biosynthesis I (E. coli)
PPHA_RS10995	PWY-7560	methylerythritol phosphate pathway II
PPHA_RS11000	PWY-5269	cardiolipin biosynthesis II
PPHA_RS11000	PWY-5668	cardiolipin biosynthesis I
PPHA_RS11005	PWY-5269	cardiolipin biosynthesis II
PPHA_RS11005	PWY-5668	cardiolipin biosynthesis I
PPHA_RS11115	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
PPHA_RS11120	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
PPHA_RS11155	PWY-6700	queuosine biosynthesis
PPHA_RS11165	PWY-6123	inosine-5'-phosphate biosynthesis I
PPHA_RS11165	PWY-6124	inosine-5'-phosphate biosynthesis II
PPHA_RS11165	PWY-7234	inosine-5'-phosphate biosynthesis III
PPHA_RS11255	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PPHA_RS11255	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PPHA_RS11260	PWY-6703	preQ<sub>0</sub> biosynthesis
PPHA_RS11290	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PPHA_RS11290	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PPHA_RS11290	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PPHA_RS11290	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PPHA_RS11310	PWY-5659	GDP-mannose biosynthesis
PPHA_RS11310	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
PPHA_RS11315	PWY-3821	galactose degradation III
PPHA_RS11315	PWY-6317	galactose degradation I (Leloir pathway)
PPHA_RS11315	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
PPHA_RS11315	PWY-6527	stachyose degradation
PPHA_RS11315	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
PPHA_RS11315	PWY-7344	UDP-D-galactose biosynthesis
PPHA_RS11320	PWY-3221	dTDP-L-rhamnose biosynthesis II
PPHA_RS11320	PWY-6808	dTDP-D-forosamine biosynthesis
PPHA_RS11320	PWY-6942	dTDP-D-desosamine biosynthesis
PPHA_RS11320	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PPHA_RS11320	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PPHA_RS11320	PWY-6974	dTDP-L-olivose biosynthesis
PPHA_RS11320	PWY-6976	dTDP-L-mycarose biosynthesis
PPHA_RS11320	PWY-7104	dTDP-L-megosamine biosynthesis
PPHA_RS11320	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PPHA_RS11320	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PPHA_RS11320	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PPHA_RS11320	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PPHA_RS11320	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PPHA_RS11320	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PPHA_RS11320	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PPHA_RS11320	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PPHA_RS11320	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
PPHA_RS11320	PWY-7688	PPHA_RS11320
PPHA_RS11370	PWY-3221	dTDP-L-rhamnose biosynthesis II
PPHA_RS11370	PWY-6808	dTDP-D-forosamine biosynthesis
PPHA_RS11370	PWY-6942	dTDP-D-desosamine biosynthesis
PPHA_RS11370	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PPHA_RS11370	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PPHA_RS11370	PWY-6974	dTDP-L-olivose biosynthesis
PPHA_RS11370	PWY-6976	dTDP-L-mycarose biosynthesis
PPHA_RS11370	PWY-7104	dTDP-L-megosamine biosynthesis
PPHA_RS11370	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PPHA_RS11370	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PPHA_RS11370	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PPHA_RS11370	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PPHA_RS11370	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PPHA_RS11370	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PPHA_RS11370	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PPHA_RS11370	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PPHA_RS11370	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
PPHA_RS11370	PWY-7688	PPHA_RS11370
PPHA_RS11405	PWY-5194	siroheme biosynthesis
PPHA_RS11405	PWY-5441	S-methyl-L-methionine cycle
PPHA_RS11405	PWY-702	L-methionine biosynthesis II
PPHA_RS11405	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PPHA_RS11410	PWY-5194	siroheme biosynthesis
PPHA_RS11410	PWY-5441	S-methyl-L-methionine cycle
PPHA_RS11410	PWY-702	L-methionine biosynthesis II
PPHA_RS11410	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PPHA_RS11425	PWY-5674	nitrate reduction IV (dissimilatory)
PPHA_RS11470	PWY-5306	superpathway of thiosulfate metabolism (<i>Desulfovibrio sulfodismutans</i>)
PPHA_RS11470	PWY-5360	superpathway of tetrathionate reduction (<i>Salmonella typhimurium</i>)
PPHA_RS11470	PWY-6683	sulfate reduction III (assimilatory)
PPHA_RS11475	PWY-6683	sulfate reduction III (assimilatory)
PPHA_RS11540	PWY-5532	adenosine nucleotides degradation IV
PPHA_RS11540	PWY-5723	Rubisco shunt
PPHA_RS11775	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PPHA_RS11775	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
PPHA_RS11775	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PPHA_RS11775	PWY-6936	seleno-amino acid biosynthesis
PPHA_RS11775	PWY-702	L-methionine biosynthesis II
PPHA_RS11780	PWY-4381	fatty acid biosynthesis initiation I
PPHA_RS11780	PWY-5743	3-hydroxypropanoate cycle
PPHA_RS11780	PWY-5744	glyoxylate assimilation
PPHA_RS11780	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PPHA_RS11780	PWY-6679	jadomycin biosynthesis
PPHA_RS11780	PWY-6722	candicidin biosynthesis
PPHA_RS11780	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PPHA_RS11790	PWY-5381	pyridine nucleotide cycling (plants)
PPHA_RS11790	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PPHA_RS11790	PWY-6596	adenosine nucleotides degradation I
PPHA_RS11790	PWY-6606	guanosine nucleotides degradation II
PPHA_RS11790	PWY-6607	guanosine nucleotides degradation I
PPHA_RS11790	PWY-6608	guanosine nucleotides degradation III
PPHA_RS11790	PWY-7185	UTP and CTP dephosphorylation I
PPHA_RS11815	PWY-5958	acridone alkaloid biosynthesis
PPHA_RS11815	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PPHA_RS11815	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PPHA_RS11910	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
PPHA_RS11925	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PPHA_RS11970	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
PPHA_RS11970	PWY-5901	2,3-dihydroxybenzoate biosynthesis
PPHA_RS11970	PWY-6406	salicylate biosynthesis I
PPHA_RS11975	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
PPHA_RS12020	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
PPHA_RS12025	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
PPHA_RS12030	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS12030	PWY-1622	formaldehyde assimilation I (serine pathway)
PPHA_RS12030	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PPHA_RS12030	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS12030	PWY-5723	Rubisco shunt
PPHA_RS12030	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
PPHA_RS12030	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PPHA_RS12030	PWY-6886	1-butanol autotrophic biosynthesis
PPHA_RS12030	PWY-6901	superpathway of glucose and xylose degradation
PPHA_RS12030	PWY-7003	glycerol degradation to butanol
PPHA_RS12030	PWY-7124	ethylene biosynthesis V (engineered)
PPHA_RS12030	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PPHA_RS12035	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
PPHA_RS12045	PWY-2941	L-lysine biosynthesis II
PPHA_RS12045	PWY-2942	L-lysine biosynthesis III
PPHA_RS12045	PWY-5097	L-lysine biosynthesis VI
PPHA_RS12155	PWY-2201	folate transformations I
PPHA_RS12155	PWY-3841	folate transformations II
PPHA_RS12245	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PPHA_RS12245	PWY-6855	chitin degradation I (archaea)
PPHA_RS12245	PWY-6906	chitin derivatives degradation
PPHA_RS12250	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PPHA_RS12335	PWY-6825	phosphatidylcholine biosynthesis V
PPHA_RS12545	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PPHA_RS12565	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PPHA_RS12590	PWY-2941	L-lysine biosynthesis II
PPHA_RS12590	PWY-2942	L-lysine biosynthesis III
PPHA_RS12590	PWY-5097	L-lysine biosynthesis VI
PPHA_RS12590	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PPHA_RS12590	PWY-6559	spermidine biosynthesis II
PPHA_RS12590	PWY-6562	norspermidine biosynthesis
PPHA_RS12590	PWY-7153	grixazone biosynthesis
PPHA_RS12590	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PPHA_RS12620	PWY-6012	acyl carrier protein metabolism I
PPHA_RS12620	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
PPHA_RS12625	PWY-5316	nicotine biosynthesis
PPHA_RS12625	PWY-5381	pyridine nucleotide cycling (plants)
PPHA_RS12625	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PPHA_RS12625	PWY-7342	superpathway of nicotine biosynthesis
PPHA_RS12635	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PPHA_RS12635	PWY-6148	tetrahydromethanopterin biosynthesis
PPHA_RS12635	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PPHA_RS12635	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PPHA_RS12640	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PPHA_RS12640	PWY-6148	tetrahydromethanopterin biosynthesis
PPHA_RS12640	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PPHA_RS12640	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PPHA_RS12700	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS12700	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS12715	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS12715	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS12720	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS12720	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS12855	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PPHA_RS12855	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PPHA_RS12855	PWY-6896	thiamin salvage I
PPHA_RS12855	PWY-6897	thiamin salvage II
PPHA_RS12910	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS12910	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS12910	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PPHA_RS12930	PWY-4261	glycerol degradation I
PPHA_RS13020	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS13150	PWY-5392	reductive TCA cycle II
PPHA_RS13150	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS13160	PWY-4381	fatty acid biosynthesis initiation I
PPHA_RS13160	PWY-5743	3-hydroxypropanoate cycle
PPHA_RS13160	PWY-5744	glyoxylate assimilation
PPHA_RS13160	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PPHA_RS13160	PWY-6679	jadomycin biosynthesis
PPHA_RS13160	PWY-6722	candicidin biosynthesis
PPHA_RS13160	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PPHA_RS13260	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS13260	PWY-1622	formaldehyde assimilation I (serine pathway)
PPHA_RS13260	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PPHA_RS13260	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS13260	PWY-5723	Rubisco shunt
PPHA_RS13260	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PPHA_RS13260	PWY-6886	1-butanol autotrophic biosynthesis
PPHA_RS13260	PWY-6901	superpathway of glucose and xylose degradation
PPHA_RS13260	PWY-7003	glycerol degradation to butanol
PPHA_RS13260	PWY-7124	ethylene biosynthesis V (engineered)
PPHA_RS13260	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PPHA_RS13280	PWY-101	photosynthesis light reactions
PPHA_RS13285	PWY-2941	L-lysine biosynthesis II
PPHA_RS13285	PWY-5097	L-lysine biosynthesis VI
PPHA_RS13330	PWY-2941	L-lysine biosynthesis II
PPHA_RS13330	PWY-2942	L-lysine biosynthesis III
PPHA_RS13330	PWY-5097	L-lysine biosynthesis VI
PPHA_RS13330	PWY-6559	spermidine biosynthesis II
PPHA_RS13330	PWY-6562	norspermidine biosynthesis
PPHA_RS13330	PWY-7153	grixazone biosynthesis
PPHA_RS13340	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PPHA_RS13345	PWY-702	L-methionine biosynthesis II
PPHA_RS13355	PWY-5667	CDP-diacylglycerol biosynthesis I
PPHA_RS13355	PWY-5981	CDP-diacylglycerol biosynthesis III
PPHA_RS13355	PWY-6453	stigma estolide biosynthesis
PPHA_RS13355	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
PPHA_RS13355	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
PPHA_RS13355	PWY-7587	oleate biosynthesis III (cyanobacteria)
PPHA_RS13355	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
PPHA_RS13360	PWY-6167	flavin biosynthesis II (archaea)
PPHA_RS13360	PWY-6168	flavin biosynthesis III (fungi)
PPHA_RS13365	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
PPHA_RS13385	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS13385	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS13395	PWY-3781	aerobic respiration I (cytochrome c)
PPHA_RS13395	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PPHA_RS13395	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PPHA_RS13395	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS13395	PWY-6728	methylaspartate cycle
PPHA_RS13395	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS13395	PWY-7254	TCA cycle VII (acetate-producers)
PPHA_RS13395	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PPHA_RS13400	PWY-3781	aerobic respiration I (cytochrome c)
PPHA_RS13400	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PPHA_RS13400	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PPHA_RS13400	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS13400	PWY-6728	methylaspartate cycle
PPHA_RS13400	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS13400	PWY-7254	TCA cycle VII (acetate-producers)
PPHA_RS13400	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PPHA_RS13485	PWY-6825	phosphatidylcholine biosynthesis V
PPHA_RS13570	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PPHA_RS13570	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PPHA_RS13710	PWY-2622	trehalose biosynthesis IV
PPHA_RS13790	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PPHA_RS13820	PWY-5686	UMP biosynthesis
PPHA_RS13825	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
PPHA_RS13830	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PPHA_RS13830	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PPHA_RS13830	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
PPHA_RS13840	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PPHA_RS13840	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PPHA_RS13845	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PPHA_RS13845	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PPHA_RS13865	PWY-5667	CDP-diacylglycerol biosynthesis I
PPHA_RS13865	PWY-5981	CDP-diacylglycerol biosynthesis III
PPHA_RS13875	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PPHA_RS13875	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PPHA_RS13875	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PPHA_RS13880	PWY-2941	L-lysine biosynthesis II
PPHA_RS13880	PWY-2942	L-lysine biosynthesis III
PPHA_RS13880	PWY-5097	L-lysine biosynthesis VI
PPHA_RS13880	PWY-6559	spermidine biosynthesis II
PPHA_RS13880	PWY-6562	norspermidine biosynthesis
PPHA_RS13880	PWY-7153	grixazone biosynthesis
PPHA_RS13960	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PPHA_RS13965	PWY-2201	folate transformations I
PPHA_RS13965	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PPHA_RS13980	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PPHA_RS14040	PWY-3781	aerobic respiration I (cytochrome c)
PPHA_RS14040	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PPHA_RS14040	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PPHA_RS14040	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS14040	PWY-6728	methylaspartate cycle
PPHA_RS14040	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS14040	PWY-7254	TCA cycle VII (acetate-producers)
PPHA_RS14040	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PPHA_RS14045	PWY-3781	aerobic respiration I (cytochrome c)
PPHA_RS14045	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PPHA_RS14045	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PPHA_RS14045	PWY-5690	TCA cycle II (plants and fungi)
PPHA_RS14045	PWY-6728	methylaspartate cycle
PPHA_RS14045	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PPHA_RS14045	PWY-7254	TCA cycle VII (acetate-producers)
PPHA_RS14045	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PPHA_RS14055	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
PPHA_RS14055	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
PPHA_RS14055	PWY-7717	PPHA_RS14055
PPHA_RS14055	PWY-7733	PPHA_RS14055
PPHA_RS14055	PWY-7734	PPHA_RS14055
PPHA_RS14145	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PPHA_RS14145	PWY-5723	Rubisco shunt
PPHA_RS14170	PWY-5381	pyridine nucleotide cycling (plants)
PPHA_RS14170	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PPHA_RS14240	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PPHA_RS14240	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PPHA_RS14245	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PPHA_RS14245	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PPHA_RS14245	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PPHA_RS14245	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PPHA_RS14255	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PPHA_RS14255	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PPHA_RS14260	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PPHA_RS14260	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PPHA_RS14260	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PPHA_RS14265	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PPHA_RS14265	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PPHA_RS14285	PWY-2201	folate transformations I
PPHA_RS14300	PWY-3461	L-tyrosine biosynthesis II
PPHA_RS14300	PWY-3462	L-phenylalanine biosynthesis II
PPHA_RS14300	PWY-6120	L-tyrosine biosynthesis III
PPHA_RS14300	PWY-6627	salinosporamide A biosynthesis
PPHA_RS14300	PWY-7626	bacilysin biosynthesis
PPHA_RS14310	PWY-1042	glycolysis IV (plant cytosol)
PPHA_RS14310	PWY-5484	glycolysis II (from fructose 6-phosphate)
PPHA_RS14310	PWY-6886	1-butanol autotrophic biosynthesis
PPHA_RS14310	PWY-6901	superpathway of glucose and xylose degradation
PPHA_RS14310	PWY-7003	glycerol degradation to butanol
PPHA_RS14640	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PPHA_RS14640	PWY-5491	diethylphosphate degradation
