PPHA_RS00005	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
PPHA_RS00010	SM00480	DNA polymerase III beta subunit
PPHA_RS00025	SM00849	Metallo-beta-lactamase superfamily
PPHA_RS00030	SM00486	DNA polymerase type-B family
PPHA_RS00035	SM01228	PPHA_RS00035
PPHA_RS00075	SM00387	Histidine kinase-like ATPases
PPHA_RS00075	SM00433	TopoisomeraseII
PPHA_RS00110	SM00316	Ribosomal protein S1-like RNA-binding domain
PPHA_RS00120	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PPHA_RS00120	SM00245	tail specific protease
PPHA_RS00225	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS00255	SM00487	DEAD-like helicases superfamily
PPHA_RS00255	SM00490	helicase superfamily c-terminal domain
PPHA_RS00320	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS00320	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS00340	SM00235	Zinc-dependent metalloprotease
PPHA_RS00345	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS00375	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS00375	SM00091	PAS domain
PPHA_RS00375	SM00387	Histidine kinase-like ATPases
PPHA_RS00375	SM00448	cheY-homologous receiver domain
PPHA_RS00385	SM00937	PPHA_RS00385
PPHA_RS00405	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS00410	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
PPHA_RS00420	SM00822	PPHA_RS00420
PPHA_RS00435	SM00938	Nitrogen regulatory protein P-II
PPHA_RS00440	SM00028	Tetratricopeptide repeats
PPHA_RS00480	SM00434	DNA Topoisomerase IV
PPHA_RS00515	SM00481	DNA polymerase alpha chain like domain
PPHA_RS00785	SM00028	Tetratricopeptide repeats
PPHA_RS00850	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS00900	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PPHA_RS00975	SM00487	DEAD-like helicases superfamily
PPHA_RS00975	SM00490	helicase superfamily c-terminal domain
PPHA_RS00985	SM00671	Sel1-like repeats.
PPHA_RS01000	SM00358	Double-stranded RNA binding motif
PPHA_RS01000	SM00535	Ribonuclease III family
PPHA_RS01005	SM00825	Beta-ketoacyl synthase
PPHA_RS01015	SM00822	PPHA_RS01015
PPHA_RS01020	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PPHA_RS01045	SM00917	LeuA allosteric (dimerisation) domain
PPHA_RS01055	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS01100	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS01115	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
PPHA_RS01120	SM01323	PPHA_RS01120
PPHA_RS01140	SM00327	von Willebrand factor (vWF) type A domain
PPHA_RS01165	SM00387	Histidine kinase-like ATPases
PPHA_RS01170	SM00138	Methyltransferase, chemotaxis proteins 
PPHA_RS01205	SM00028	Tetratricopeptide repeats
PPHA_RS01225	SM00327	von Willebrand factor (vWF) type A domain
PPHA_RS01230	SM00327	von Willebrand factor (vWF) type A domain
PPHA_RS01240	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS01255	SM00028	Tetratricopeptide repeats
PPHA_RS01255	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS01265	SM00845	GatB domain
PPHA_RS01325	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS01340	SM00966	SpoVT / AbrB like domain 
PPHA_RS01355	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS01365	SM00255	Toll - interleukin 1 - resistance
PPHA_RS01370	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS01415	SM00487	DEAD-like helicases superfamily
PPHA_RS01415	SM00490	helicase superfamily c-terminal domain
PPHA_RS01450	SM00838	Elongation factor G C-terminus
PPHA_RS01450	SM00889	Elongation factor G, domain IV
PPHA_RS01460	SM01403	PPHA_RS01460
PPHA_RS01480	SM01382	PPHA_RS01480
PPHA_RS01480	SM01383	PPHA_RS01480
PPHA_RS01495	SM00322	K homology RNA-binding domain
PPHA_RS01515	SM01374	PPHA_RS01515
PPHA_RS01525	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PPHA_RS01580	SM00316	Ribosomal protein S1-like RNA-binding domain
PPHA_RS01600	SM00363	S4 RNA-binding domain
PPHA_RS01600	SM01390	PPHA_RS01600
PPHA_RS01605	SM00662	RNA polymerases D
PPHA_RS01625	SM00840	PPHA_RS01625
PPHA_RS01635	SM00788	Adenylosuccinate synthetase
PPHA_RS01685	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS01720	SM00562	PPHA_RS01720
PPHA_RS01785	SM00507	HNH nucleases
PPHA_RS01835	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS01865	SM00320	WD40 repeats
PPHA_RS01870	SM00357	Cold shock protein domain
PPHA_RS01890	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS01895	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS01910	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS01985	SM00322	K homology RNA-binding domain
PPHA_RS02010	SM01387	PPHA_RS02010
PPHA_RS02020	SM00072	Guanylate kinase homologues.
PPHA_RS02050	SM00935	Outer membrane protein (OmpH-like)
PPHA_RS02070	SM01240	PPHA_RS02070
PPHA_RS02105	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02120	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PPHA_RS02130	SM00357	Cold shock protein domain
PPHA_RS02130	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02130	SM00959	Rho termination factor, N-terminal domain
PPHA_RS02145	SM00893	Electron transfer flavoprotein domain
PPHA_RS02150	SM00893	Electron transfer flavoprotein domain
PPHA_RS02175	SM00881	CoA binding domain
PPHA_RS02180	SM00116	Domain in cystathionine beta-synthase and other proteins.
PPHA_RS02230	SM00028	Tetratricopeptide repeats
PPHA_RS02260	SM00316	Ribosomal protein S1-like RNA-binding domain
PPHA_RS02295	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS02305	SM00411	bacterial (prokaryotic) histone like domain
PPHA_RS02315	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02345	SM00642	Alpha-amylase domain
PPHA_RS02370	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02390	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02395	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02415	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02425	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PPHA_RS02425	SM00292	breast cancer carboxy-terminal domain
PPHA_RS02425	SM00532	Ligase N family
PPHA_RS02460	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02495	SM00363	S4 RNA-binding domain
PPHA_RS02530	SM00478	endonuclease III
PPHA_RS02550	SM01321	PPHA_RS02550
PPHA_RS02565	SM01235	PPHA_RS02565
PPHA_RS02570	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS02575	SM00341	Helicase and RNase D C-terminal
PPHA_RS02575	SM00487	DEAD-like helicases superfamily
PPHA_RS02575	SM00490	helicase superfamily c-terminal domain
PPHA_RS02575	SM00956	PPHA_RS02575
PPHA_RS02615	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS02635	SM00858	PPHA_RS02635
PPHA_RS02950	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS02980	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS02995	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS03080	SM00984	UDP binding domain
PPHA_RS03100	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
PPHA_RS03140	SM00100	Cyclic nucleotide-monophosphate binding domain
PPHA_RS03140	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS03150	SM00028	Tetratricopeptide repeats
PPHA_RS03200	SM01209	PPHA_RS03200
PPHA_RS03200	SM01210	PPHA_RS03200
PPHA_RS03210	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PPHA_RS03240	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
PPHA_RS03240	SM00474	3'-5' exonuclease
PPHA_RS03240	SM00475	5'-3' exonuclease
PPHA_RS03240	SM00482	DNA polymerase A domain
PPHA_RS03295	SM00316	Ribosomal protein S1-like RNA-binding domain
PPHA_RS03295	SM00322	K homology RNA-binding domain
PPHA_RS03310	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS03325	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS03345	SM00507	HNH nucleases
PPHA_RS03415	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS03420	SM00028	Tetratricopeptide repeats
PPHA_RS03425	SM00890	Domain of unknown function
PPHA_RS03430	SM00967	RNA 2'-O ribose methyltransferase substrate binding
PPHA_RS03445	SM01130	PPHA_RS03445
PPHA_RS03450	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS03450	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS03450	SM00091	PAS domain
PPHA_RS03450	SM00387	Histidine kinase-like ATPases
PPHA_RS03450	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS03450	SM00448	cheY-homologous receiver domain
PPHA_RS03525	SM00112	Cadherin repeats.
PPHA_RS03580	SM00851	MGS-like domain
PPHA_RS03580	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PPHA_RS03595	SM00400	zinc finger
PPHA_RS03595	SM00493	PPHA_RS03595
PPHA_RS03650	SM01001	AIR carboxylase
PPHA_RS03655	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS03670	SM00487	DEAD-like helicases superfamily
PPHA_RS03755	SM00869	Autotransporter beta-domain
PPHA_RS03770	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS03790	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS03845	SM00855	Phosphoglycerate mutase family
PPHA_RS03865	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS03865	SM00994	ClpX C4-type zinc finger
PPHA_RS03865	SM01086	C-terminal, D2-small domain, of ClpB protein
PPHA_RS03895	SM00487	DEAD-like helicases superfamily
PPHA_RS03905	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS03940	SM00858	PPHA_RS03940
PPHA_RS04045	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS04050	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS04105	SM00883	Chaperonin 10 Kd subunit
PPHA_RS04180	SM00268	Actin
PPHA_RS04295	SM00883	Chaperonin 10 Kd subunit
PPHA_RS04320	SM00387	Histidine kinase-like ATPases
PPHA_RS04320	SM00448	cheY-homologous receiver domain
PPHA_RS04490	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS04515	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PPHA_RS04585	SM00487	DEAD-like helicases superfamily
PPHA_RS04585	SM00490	helicase superfamily c-terminal domain
PPHA_RS04590	SM00849	Metallo-beta-lactamase superfamily
PPHA_RS04590	SM01027	Beta-Casp domain
PPHA_RS04635	SM00357	Cold shock protein domain
PPHA_RS04660	SM00912	haemagglutination activity domain
PPHA_RS04665	SM00971	Serine acetyltransferase, N-terminal
PPHA_RS04675	SM01004	Delta-aminolevulinic acid dehydratase
PPHA_RS04725	SM00838	Elongation factor G C-terminus
PPHA_RS04835	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS04870	SM00645	Papain family cysteine protease
PPHA_RS04885	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS04900	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PPHA_RS04900	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS04920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PPHA_RS04920	SM00387	Histidine kinase-like ATPases
PPHA_RS04920	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS04925	SM00448	cheY-homologous receiver domain
PPHA_RS04925	SM00862	Transcriptional regulatory protein, C terminal
PPHA_RS04940	SM00671	Sel1-like repeats.
PPHA_RS05060	SM00091	PAS domain
PPHA_RS05060	SM00331	Sigma factor PP2C-like phosphatases
PPHA_RS05060	SM00448	cheY-homologous receiver domain
PPHA_RS05115	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PPHA_RS05115	SM00534	ATPase domain of DNA mismatch repair MUTS family
PPHA_RS05120	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS05205	SM00857	Resolvase, N terminal domain
PPHA_RS05230	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS05235	SM00422	helix_turn_helix, mercury resistance
PPHA_RS05250	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS05290	SM00240	Forkhead associated domain
PPHA_RS05295	SM00240	Forkhead associated domain
PPHA_RS05340	SM00220	Serine/Threonine protein kinases, catalytic domain
PPHA_RS05365	SM00946	Prolyl-tRNA synthetase, C-terminal
PPHA_RS05390	SM00271	DnaJ molecular chaperone homology domain
PPHA_RS05395	SM00919	Malic enzyme, NAD binding domain
PPHA_RS05395	SM01274	PPHA_RS05395
PPHA_RS05405	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PPHA_RS05445	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS05455	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
PPHA_RS05470	SM01321	PPHA_RS05470
PPHA_RS05535	SM00342	helix_turn_helix, arabinose operon control protein
PPHA_RS05575	SM00487	DEAD-like helicases superfamily
PPHA_RS05575	SM00490	helicase superfamily c-terminal domain
PPHA_RS05590	SM00487	DEAD-like helicases superfamily
PPHA_RS05590	SM00490	helicase superfamily c-terminal domain
PPHA_RS05735	SM00886	Stress responsive A/B Barrel Domain
PPHA_RS05755	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS05755	SM00091	PAS domain
PPHA_RS05755	SM00387	Histidine kinase-like ATPases
PPHA_RS05755	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS05755	SM00448	cheY-homologous receiver domain
PPHA_RS05805	SM00244	prohibitin homologues
PPHA_RS05845	SM00650	Ribosomal RNA adenine dimethylases
PPHA_RS05850	SM00861	Transketolase, pyrimidine binding domain
PPHA_RS05860	SM00493	PPHA_RS05860
PPHA_RS05955	SM00563	Phosphate acyltransferases
PPHA_RS06005	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS06030	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS06030	SM01086	C-terminal, D2-small domain, of ClpB protein
PPHA_RS06045	SM00998	Adenylosuccinate lyase C-terminus
PPHA_RS06070	SM00487	DEAD-like helicases superfamily
PPHA_RS06125	SM00028	Tetratricopeptide repeats
PPHA_RS06150	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS06180	SM00028	Tetratricopeptide repeats
PPHA_RS06215	SM01040	BRO family, N-terminal domain
PPHA_RS06235	SM00320	WD40 repeats
PPHA_RS06315	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS06340	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
PPHA_RS06350	SM00966	SpoVT / AbrB like domain 
PPHA_RS06365	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS06425	SM01321	PPHA_RS06425
PPHA_RS06470	SM00028	Tetratricopeptide repeats
PPHA_RS06525	SM00957	SecA DEAD-like domain
PPHA_RS06525	SM00958	SecA preprotein cross-linking domain
PPHA_RS06535	SM00478	endonuclease III
PPHA_RS06540	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PPHA_RS06550	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS06555	SM00411	bacterial (prokaryotic) histone like domain
PPHA_RS06565	SM00387	Histidine kinase-like ATPases
PPHA_RS06565	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS06570	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS06570	SM00448	cheY-homologous receiver domain
PPHA_RS06615	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS06620	SM00852	Probable molybdopterin binding domain
PPHA_RS06625	SM00852	Probable molybdopterin binding domain
PPHA_RS06645	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PPHA_RS06665	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS06710	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS06710	SM00387	Histidine kinase-like ATPases
PPHA_RS06710	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS06710	SM00448	cheY-homologous receiver domain
PPHA_RS06775	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PPHA_RS06775	SM00245	tail specific protease
PPHA_RS06785	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PPHA_RS06785	SM00245	tail specific protease
PPHA_RS06810	SM00966	SpoVT / AbrB like domain 
PPHA_RS06840	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS06870	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PPHA_RS06880	SM00267	diguanylate cyclase
PPHA_RS06915	SM00881	CoA binding domain
PPHA_RS06920	SM00360	RNA recognition motif
PPHA_RS07030	SM01321	PPHA_RS07030
PPHA_RS07065	SM00487	DEAD-like helicases superfamily
PPHA_RS07065	SM00490	helicase superfamily c-terminal domain
PPHA_RS07070	SM00487	DEAD-like helicases superfamily
PPHA_RS07070	SM00490	helicase superfamily c-terminal domain
PPHA_RS07075	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS07080	SM00411	bacterial (prokaryotic) histone like domain
PPHA_RS07135	SM00487	DEAD-like helicases superfamily
PPHA_RS07135	SM00490	helicase superfamily c-terminal domain
PPHA_RS07180	SM01040	BRO family, N-terminal domain
PPHA_RS07215	SM00487	DEAD-like helicases superfamily
PPHA_RS07290	SM00028	Tetratricopeptide repeats
PPHA_RS07300	SM00226	Low molecular weight phosphatase family
PPHA_RS07315	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PPHA_RS07330	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS07375	SM00478	endonuclease III
PPHA_RS07405	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS07405	SM00962	SRP54-type protein, GTPase domain
PPHA_RS07405	SM00963	SRP54-type protein, helical bundle domain
PPHA_RS07425	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PPHA_RS07425	SM00245	tail specific protease
PPHA_RS07450	SM00984	UDP binding domain
PPHA_RS07495	SM00487	DEAD-like helicases superfamily
PPHA_RS07495	SM00490	helicase superfamily c-terminal domain
PPHA_RS07545	SM00257	Lysin motif
PPHA_RS07580	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS07595	SM00740	PPHA_RS07595
PPHA_RS07640	SM00831	Cation transporter/ATPase, N-terminus
PPHA_RS07665	SM00481	DNA polymerase alpha chain like domain
PPHA_RS07670	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS07690	SM00365	Leucine-rich repeat, SDS22-like subfamily
PPHA_RS07725	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS07790	SM00387	Histidine kinase-like ATPases
PPHA_RS07910	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS08010	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS08030	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS08045	SM01211	PPHA_RS08045
PPHA_RS08070	SM00881	CoA binding domain
PPHA_RS08095	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS08130	SM01400	PPHA_RS08130
PPHA_RS08190	SM00091	PAS domain
PPHA_RS08190	SM00138	Methyltransferase, chemotaxis proteins 
PPHA_RS08210	SM00487	DEAD-like helicases superfamily
PPHA_RS08270	SM00479	PPHA_RS08270
PPHA_RS08315	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS08360	SM00563	Phosphate acyltransferases
PPHA_RS08405	SM00880	PPHA_RS08405
PPHA_RS08415	SM00098	Alkaline phosphatase homologues
PPHA_RS08420	SM00448	cheY-homologous receiver domain
PPHA_RS08420	SM00862	Transcriptional regulatory protein, C terminal
PPHA_RS08425	SM00091	PAS domain
PPHA_RS08425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PPHA_RS08425	SM00387	Histidine kinase-like ATPases
PPHA_RS08425	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS08480	SM00028	Tetratricopeptide repeats
PPHA_RS08540	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS08665	SM00460	Transglutaminase/protease-like homologues
PPHA_RS08690	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS08740	SM01230	PPHA_RS08740
PPHA_RS08745	SM00344	helix_turn_helix ASNC type
PPHA_RS08815	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PPHA_RS08850	SM00448	cheY-homologous receiver domain
PPHA_RS08870	SM00116	Domain in cystathionine beta-synthase and other proteins.
PPHA_RS08870	SM01240	PPHA_RS08870
PPHA_RS08895	SM00327	von Willebrand factor (vWF) type A domain
PPHA_RS08895	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS08900	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS08910	SM00363	S4 RNA-binding domain
PPHA_RS08920	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS08920	SM00448	cheY-homologous receiver domain
PPHA_RS08965	SM00271	DnaJ molecular chaperone homology domain
PPHA_RS08970	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS08970	SM01072	Cell division protein 48 (CDC48) domain 2
PPHA_RS08970	SM01073	Cell division protein 48 (CDC48) N-terminal domain
PPHA_RS08995	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09035	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09050	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09055	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09105	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS09130	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS09150	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS09260	SM00028	Tetratricopeptide repeats
PPHA_RS09320	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09330	SM00642	Alpha-amylase domain
PPHA_RS09460	SM00316	Ribosomal protein S1-like RNA-binding domain
PPHA_RS09460	SM00955	PPHA_RS09460
PPHA_RS09495	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS09515	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS09515	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09570	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS09635	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09660	SM00938	Nitrogen regulatory protein P-II
PPHA_RS09665	SM00938	Nitrogen regulatory protein P-II
PPHA_RS09690	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS09825	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS09830	SM00487	DEAD-like helicases superfamily
PPHA_RS09830	SM00490	helicase superfamily c-terminal domain
PPHA_RS09850	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09875	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09890	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS09935	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS09935	SM00876	Biotin and Thiamin Synthesis associated domain
PPHA_RS09955	SM00028	Tetratricopeptide repeats
PPHA_RS09965	SM00861	Transketolase, pyrimidine binding domain
PPHA_RS10020	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS10040	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS10045	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS10080	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS10150	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS10220	SM00465	GIY-YIG type nucleases (URI domain)
PPHA_RS10225	SM00028	Tetratricopeptide repeats
PPHA_RS10245	SM00028	Tetratricopeptide repeats
PPHA_RS10340	SM00322	K homology RNA-binding domain
PPHA_RS10340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PPHA_RS10360	SM00873	B3/4 domain
PPHA_RS10360	SM00874	tRNA synthetase B5 domain
PPHA_RS10360	SM00896	Ferredoxin-fold anticodon binding domain
PPHA_RS10400	SM00996	S-adenosyl-L-homocysteine hydrolase
PPHA_RS10400	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
PPHA_RS10425	SM00360	RNA recognition motif
PPHA_RS10465	SM00487	DEAD-like helicases superfamily
PPHA_RS10465	SM00490	helicase superfamily c-terminal domain
PPHA_RS10540	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS10580	SM00487	DEAD-like helicases superfamily
PPHA_RS10580	SM00490	helicase superfamily c-terminal domain
PPHA_RS10640	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS10645	SM00487	DEAD-like helicases superfamily
PPHA_RS10645	SM00490	helicase superfamily c-terminal domain
PPHA_RS10645	SM00982	PPHA_RS10645
PPHA_RS10645	SM01058	CarD-like/TRCF domain
PPHA_RS10660	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PPHA_RS10660	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PPHA_RS10680	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PPHA_RS10770	SM01329	PPHA_RS10770
PPHA_RS10775	SM00917	LeuA allosteric (dimerisation) domain
PPHA_RS10790	SM00917	LeuA allosteric (dimerisation) domain
PPHA_RS10820	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS10895	SM00014	Acid phosphatase homologues
PPHA_RS10985	SM00642	Alpha-amylase domain
PPHA_RS10995	SM00861	Transketolase, pyrimidine binding domain
PPHA_RS11010	SM00463	Small MutS-related domain
PPHA_RS11010	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PPHA_RS11010	SM00534	ATPase domain of DNA mismatch repair MUTS family
PPHA_RS11020	SM00953	PPHA_RS11020
PPHA_RS11025	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS11070	SM00487	DEAD-like helicases superfamily
PPHA_RS11090	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS11105	SM00953	PPHA_RS11105
PPHA_RS11125	SM00481	DNA polymerase alpha chain like domain
PPHA_RS11135	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS11165	SM00798	AICARFT/IMPCHase bienzyme
PPHA_RS11165	SM00851	MGS-like domain
PPHA_RS11175	SM00560	LamG-like jellyroll fold domain
PPHA_RS11230	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS11270	SM00518	AP endonuclease family 2
PPHA_RS11495	SM00450	Rhodanese Homology Domain
PPHA_RS11515	SM00450	Rhodanese Homology Domain
PPHA_RS11545	SM01133	PPHA_RS11545
PPHA_RS11550	SM01007	Class II Aldolase and Adducin N-terminal domain
PPHA_RS11580	SM00341	Helicase and RNase D C-terminal
PPHA_RS11665	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS11665	SM00843	PPHA_RS11665
PPHA_RS11695	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PPHA_RS11695	SM00954	Region found in RelA / SpoT proteins
PPHA_RS11700	SM00487	DEAD-like helicases superfamily
PPHA_RS11700	SM00490	helicase superfamily c-terminal domain
PPHA_RS11805	SM01235	PPHA_RS11805
PPHA_RS11845	SM00046	Diacylglycerol kinase catalytic domain (presumed)
PPHA_RS11865	SM00487	DEAD-like helicases superfamily
PPHA_RS11865	SM00490	helicase superfamily c-terminal domain
PPHA_RS11885	SM01321	PPHA_RS11885
PPHA_RS11930	SM01152	PPHA_RS11930
PPHA_RS11965	SM00028	Tetratricopeptide repeats
PPHA_RS11990	SM01321	PPHA_RS11990
PPHA_RS12010	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS12030	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PPHA_RS12050	SM00470	ParB-like nuclease domain
PPHA_RS12060	SM00116	Domain in cystathionine beta-synthase and other proteins.
PPHA_RS12060	SM00924	MgtE intracellular N domain
PPHA_RS12080	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS12155	SM01018	B12 binding domain
PPHA_RS12220	SM00854	Bacterial capsule synthesis protein PGA_cap
PPHA_RS12255	SM01350	PPHA_RS12255
PPHA_RS12425	SM00966	SpoVT / AbrB like domain 
PPHA_RS12435	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS12475	SM00357	Cold shock protein domain
PPHA_RS12520	SM00342	helix_turn_helix, arabinose operon control protein
PPHA_RS12525	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS12530	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PPHA_RS12560	SM00116	Domain in cystathionine beta-synthase and other proteins.
PPHA_RS12565	SM01005	Alanine racemase, C-terminal domain
PPHA_RS12570	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PPHA_RS12585	SM00966	SpoVT / AbrB like domain 
PPHA_RS12590	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PPHA_RS12600	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS12635	SM00905	Dihydroneopterin aldolase
PPHA_RS12725	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS12820	SM00986	Uracil DNA glycosylase superfamily
PPHA_RS12820	SM00987	UreE urease accessory protein, C-terminal domain 
PPHA_RS12825	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS12850	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS12850	SM00962	SRP54-type protein, GTPase domain
PPHA_RS12850	SM00963	SRP54-type protein, helical bundle domain
PPHA_RS12885	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS12885	SM01086	C-terminal, D2-small domain, of ClpB protein
PPHA_RS12940	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS12950	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS13025	SM00450	Rhodanese Homology Domain
PPHA_RS13045	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS13140	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PPHA_RS13165	SM00411	bacterial (prokaryotic) histone like domain
PPHA_RS13170	SM00841	Elongation factor P, C-terminal
PPHA_RS13170	SM01185	PPHA_RS13170
PPHA_RS13180	SM00878	Biotin carboxylase C-terminal domain
PPHA_RS13185	SM00663	RNA polymerase I subunit A N-terminus
PPHA_RS13210	SM00649	Ribosomal protein L11/L12
PPHA_RS13215	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
PPHA_RS13245	SM00822	PPHA_RS13245
PPHA_RS13260	SM01192	PPHA_RS13260
PPHA_RS13260	SM01193	PPHA_RS13260
PPHA_RS13265	SM00838	Elongation factor G C-terminus
PPHA_RS13265	SM00889	Elongation factor G, domain IV
PPHA_RS13320	SM00853	MutL C terminal dimerisation domain
PPHA_RS13320	SM01340	PPHA_RS13320
PPHA_RS13325	SM00852	Probable molybdopterin binding domain
PPHA_RS13355	SM00563	Phosphate acyltransferases
PPHA_RS13375	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS13405	SM00116	Domain in cystathionine beta-synthase and other proteins.
PPHA_RS13410	SM00849	Metallo-beta-lactamase superfamily
PPHA_RS13465	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS13525	SM01133	PPHA_RS13525
PPHA_RS13530	SM01007	Class II Aldolase and Adducin N-terminal domain
PPHA_RS13585	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS13620	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS13620	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS13620	SM00091	PAS domain
PPHA_RS13620	SM00387	Histidine kinase-like ATPases
PPHA_RS13620	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS13620	SM00448	cheY-homologous receiver domain
PPHA_RS13625	SM00448	cheY-homologous receiver domain
PPHA_RS13710	SM00642	Alpha-amylase domain
PPHA_RS13715	SM00642	Alpha-amylase domain
PPHA_RS13720	SM00937	PPHA_RS13720
PPHA_RS13735	SM00477	DNA/RNA non-specific endonuclease
PPHA_RS13735	SM00892	DNA/RNA non-specific endonuclease
PPHA_RS13760	SM00530	Helix-turn-helix XRE-family like proteins 
PPHA_RS13780	SM00834	Putative regulatory protein
PPHA_RS13815	SM00732	Likely ribonuclease with RNase H fold.
PPHA_RS13850	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS13850	SM01086	C-terminal, D2-small domain, of ClpB protein
PPHA_RS13870	SM01207	PPHA_RS13870
PPHA_RS13980	SM00729	Elongator protein 3, MiaB family, Radical SAM
PPHA_RS13980	SM00876	Biotin and Thiamin Synthesis associated domain
PPHA_RS13990	SM00646	PPHA_RS13990
PPHA_RS13995	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PPHA_RS13995	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PPHA_RS13995	SM00493	PPHA_RS13995
PPHA_RS14005	SM00899	PPHA_RS14005
PPHA_RS14015	SM00116	Domain in cystathionine beta-synthase and other proteins.
PPHA_RS14015	SM01091	Transporter associated domain
PPHA_RS14020	SM00028	Tetratricopeptide repeats
PPHA_RS14075	SM00849	Metallo-beta-lactamase superfamily
PPHA_RS14085	SM00450	Rhodanese Homology Domain
PPHA_RS14090	SM00226	Low molecular weight phosphatase family
PPHA_RS14135	SM00028	Tetratricopeptide repeats
PPHA_RS14165	SM00836	DALR anticodon binding domain
PPHA_RS14165	SM01016	Arginyl tRNA synthetase N terminal dom
PPHA_RS14225	SM00864	Tubulin/FtsZ family, GTPase domain
PPHA_RS14225	SM00865	Tubulin/FtsZ family, C-terminal domain
PPHA_RS14230	SM00842	Cell division protein FtsA
PPHA_RS14275	SM00740	PPHA_RS14275
PPHA_RS14300	SM00830	Chorismate mutase type II
PPHA_RS14335	SM00487	DEAD-like helicases superfamily
PPHA_RS14335	SM00490	helicase superfamily c-terminal domain
PPHA_RS14380	SM00014	Acid phosphatase homologues
PPHA_RS14390	SM01234	PPHA_RS14390
PPHA_RS14405	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS14425	SM00255	Toll - interleukin 1 - resistance
PPHA_RS14430	SM00091	PAS domain
PPHA_RS14475	SM00028	Tetratricopeptide repeats
PPHA_RS14510	SM00382	ATPases associated with a variety of cellular activities
PPHA_RS14515	SM00255	Toll - interleukin 1 - resistance
PPHA_RS14525	SM00331	Sigma factor PP2C-like phosphatases
PPHA_RS14525	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
PPHA_RS14535	SM00220	Serine/Threonine protein kinases, catalytic domain
PPHA_RS14540	SM00028	Tetratricopeptide repeats
PPHA_RS14550	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS14550	SM00387	Histidine kinase-like ATPases
PPHA_RS14555	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS14555	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS14555	SM00091	PAS domain
PPHA_RS14555	SM00387	Histidine kinase-like ATPases
PPHA_RS14555	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS14555	SM00448	cheY-homologous receiver domain
PPHA_RS14560	SM00255	Toll - interleukin 1 - resistance
PPHA_RS14565	SM00255	Toll - interleukin 1 - resistance
PPHA_RS14575	SM00091	PAS domain
PPHA_RS14575	SM00387	Histidine kinase-like ATPases
PPHA_RS14575	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS14590	SM00028	Tetratricopeptide repeats
PPHA_RS14595	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS14595	SM00091	PAS domain
PPHA_RS14595	SM00387	Histidine kinase-like ATPases
PPHA_RS14630	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS14630	SM00091	PAS domain
PPHA_RS14630	SM00387	Histidine kinase-like ATPases
PPHA_RS14630	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS14630	SM00448	cheY-homologous receiver domain
PPHA_RS14635	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS14635	SM00091	PAS domain
PPHA_RS14635	SM00387	Histidine kinase-like ATPases
PPHA_RS14635	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS14635	SM00448	cheY-homologous receiver domain
PPHA_RS14640	SM00098	Alkaline phosphatase homologues
PPHA_RS14640	SM00736	Dystroglycan-type cadherin-like domains.
PPHA_RS14655	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS14655	SM00091	PAS domain
PPHA_RS14655	SM00387	Histidine kinase-like ATPases
PPHA_RS14660	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS14660	SM00091	PAS domain
PPHA_RS14660	SM00387	Histidine kinase-like ATPases
PPHA_RS14675	SM00448	cheY-homologous receiver domain
PPHA_RS14685	SM00255	Toll - interleukin 1 - resistance
PPHA_RS14690	SM00671	Sel1-like repeats.
PPHA_RS14695	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS14695	SM00091	PAS domain
PPHA_RS14695	SM00387	Histidine kinase-like ATPases
PPHA_RS14695	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS14695	SM00448	cheY-homologous receiver domain
PPHA_RS14710	SM00953	PPHA_RS14710
PPHA_RS14715	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PPHA_RS14715	SM00091	PAS domain
PPHA_RS14715	SM00387	Histidine kinase-like ATPases
PPHA_RS14715	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS14715	SM00448	cheY-homologous receiver domain
PPHA_RS14720	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PPHA_RS14720	SM00091	PAS domain
PPHA_RS14720	SM00387	Histidine kinase-like ATPases
PPHA_RS14720	SM00388	His Kinase A (phosphoacceptor) domain
PPHA_RS14720	SM00448	cheY-homologous receiver domain
PPHA_RS14780	SM00028	Tetratricopeptide repeats
