locus-tag class description PDPE_RS00020 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS00025 PF00266 Aminotransferase class-V PDPE_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A PDPE_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller PDPE_RS00045 PF00268 Ribonucleotide reductase, small chain PDPE_RS00055 PF01276 Orn/Lys/Arg decarboxylase, major domain PDPE_RS00055 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PDPE_RS00055 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain PDPE_RS00080 PF02464 Competence-damaged protein PDPE_RS00080 PF00994 Probable molybdopterin binding domain PDPE_RS00085 PF03222 Tryptophan/tyrosine permease family PDPE_RS00095 PF03707 Bacterial signalling protein N terminal repeat PDPE_RS00095 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS00095 PF00563 EAL domain PDPE_RS00105 PF03466 LysR substrate binding domain PDPE_RS00105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS00115 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PDPE_RS00120 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS00125 PF01751 Toprim domain PDPE_RS00125 PF01396 Topoisomerase DNA binding C4 zinc finger PDPE_RS00125 PF01131 DNA topoisomerase PDPE_RS00125 PF08272 Topoisomerase I zinc-ribbon-like PDPE_RS00130 PF10692 Protein of unknown function (DUF2498) PDPE_RS00135 PF08496 Peptidase family S49 N-terminal PDPE_RS00135 PF01343 Peptidase family S49 PDPE_RS00140 PF00106 short chain dehydrogenase PDPE_RS00145 PF00849 RNA pseudouridylate synthase PDPE_RS00145 PF01479 S4 domain PDPE_RS00150 PF01300 Telomere recombination PDPE_RS00155 PF02811 PHP domain PDPE_RS00160 PF18152 DAHP synthase ferredoxin-like domain PDPE_RS00160 PF00793 DAHP synthetase I family PDPE_RS00165 PF00425 chorismate binding enzyme PDPE_RS00165 PF04715 Anthranilate synthase component I, N terminal region PDPE_RS00170 PF00117 Glutamine amidotransferase class-I PDPE_RS00175 PF00591 Glycosyl transferase family, a/b domain PDPE_RS00175 PF02885 Glycosyl transferase family, helical bundle domain PDPE_RS00180 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PDPE_RS00180 PF00218 Indole-3-glycerol phosphate synthase PDPE_RS00185 PF00291 Pyridoxal-phosphate dependent enzyme PDPE_RS00190 PF00290 Tryptophan synthase alpha chain PDPE_RS00195 PF04279 Intracellular septation protein A PDPE_RS00205 PF03795 YCII-related domain PDPE_RS00215 PF10672 S-adenosylmethionine-dependent methyltransferase PDPE_RS00215 PF17785 PUA-like domain PDPE_RS00225 PF00849 RNA pseudouridylate synthase PDPE_RS00230 PF00209 Sodium:neurotransmitter symporter family PDPE_RS00235 PF13091 PLD-like domain PDPE_RS00235 PF13396 Phospholipase_D-nuclease N-terminal PDPE_RS00250 PF03707 Bacterial signalling protein N terminal repeat PDPE_RS00250 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS00250 PF00563 EAL domain PDPE_RS00260 PF00465 Iron-containing alcohol dehydrogenase PDPE_RS00270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PDPE_RS00270 PF12729 Four helix bundle sensory module for signal transduction PDPE_RS00270 PF00672 HAMP domain PDPE_RS00275 PF01588 Putative tRNA binding domain PDPE_RS00280 PF00356 Bacterial regulatory proteins, lacI family PDPE_RS00285 PF02837 Glycosyl hydrolases family 2, sugar binding domain PDPE_RS00285 PF16353 Domain of unknown function(DUF4981) PDPE_RS00285 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PDPE_RS00285 PF00703 Glycosyl hydrolases family 2 PDPE_RS00285 PF02929 Beta galactosidase small chain PDPE_RS00290 PF04074 YhcH/YjgK/YiaL PDPE_RS00295 PF13520 Amino acid permease PDPE_RS00300 PF13520 Amino acid permease PDPE_RS00315 PF01177 Asp/Glu/Hydantoin racemase PDPE_RS00320 PF12833 Helix-turn-helix domain PDPE_RS00320 PF12852 Cupin PDPE_RS00340 PF00924 Mechanosensitive ion channel PDPE_RS00340 PF12795 Mechanosensitive ion channel porin domain PDPE_RS00340 PF12794 Mechanosensitive ion channel inner membrane domain 1 PDPE_RS00345 PF00561 alpha/beta hydrolase fold PDPE_RS00345 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus PDPE_RS00355 PF00108 Thiolase, N-terminal domain PDPE_RS00355 PF02803 Thiolase, C-terminal domain PDPE_RS00360 PF00106 short chain dehydrogenase PDPE_RS00365 PF06610 L-alanine exporter PDPE_RS00375 PF00072 Response regulator receiver domain PDPE_RS00375 PF04397 LytTr DNA-binding domain PDPE_RS00380 PF06580 Histidine kinase PDPE_RS00380 PF07694 5TMR of 5TMR-LYT PDPE_RS00380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS00400 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS00445 PF00171 Aldehyde dehydrogenase family PDPE_RS00475 PF00462 Glutaredoxin PDPE_RS00505 PF03205 Molybdopterin guanine dinucleotide synthesis protein B PDPE_RS00525 PF00293 NUDIX domain PDPE_RS00535 PF00581 Rhodanese-like domain PDPE_RS00540 PF00248 Aldo/keto reductase family PDPE_RS00570 PF03144 Elongation factor Tu domain 2 PDPE_RS00570 PF00679 Elongation factor G C-terminus PDPE_RS00570 PF00009 Elongation factor Tu GTP binding domain PDPE_RS00570 PF03764 Elongation factor G, domain IV PDPE_RS00570 PF14492 Elongation Factor G, domain II PDPE_RS00575 PF03577 Peptidase family C69 PDPE_RS00585 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PDPE_RS00595 PF02142 MGS-like domain PDPE_RS00600 PF08240 Alcohol dehydrogenase GroES-like domain PDPE_RS00600 PF00107 Zinc-binding dehydrogenase PDPE_RS00605 PF13361 UvrD-like helicase C-terminal domain PDPE_RS00605 PF00580 UvrD/REP helicase N-terminal domain PDPE_RS00605 PF12462 DNA helicase IV / RNA helicase N terminal PDPE_RS00610 PF12805 FUSC-like inner membrane protein yccS PDPE_RS00620 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS00650 PF01048 Phosphorylase superfamily PDPE_RS00660 PF00072 Response regulator receiver domain PDPE_RS00660 PF00158 Sigma-54 interaction domain PDPE_RS00660 PF02954 Bacterial regulatory protein, Fis family PDPE_RS00665 PF00497 Bacterial extracellular solute-binding proteins, family 3 PDPE_RS00665 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS00675 PF01743 Poly A polymerase head domain PDPE_RS00675 PF00571 CBS domain PDPE_RS00675 PF02272 DHHA1 domain PDPE_RS00675 PF01368 DHH family PDPE_RS00685 PF00497 Bacterial extracellular solute-binding proteins, family 3 PDPE_RS00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS00685 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS00695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PDPE_RS00695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDPE_RS00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS00700 PF03466 LysR substrate binding domain PDPE_RS00705 PF04993 TfoX N-terminal domain PDPE_RS00705 PF04994 TfoX C-terminal domain PDPE_RS00720 PF00367 phosphotransferase system, EIIB PDPE_RS00720 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PDPE_RS00720 PF02378 Phosphotransferase system, EIIC PDPE_RS00725 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS00735 PF09115 DNA polymerase III, delta subunit, C terminal PDPE_RS00740 PF02223 Thymidylate kinase PDPE_RS00745 PF02618 YceG-like family PDPE_RS00750 PF01063 Amino-transferase class IV PDPE_RS00755 PF02801 Beta-ketoacyl synthase, C-terminal domain PDPE_RS00755 PF00109 Beta-ketoacyl synthase, N-terminal domain PDPE_RS00760 PF00550 Phosphopantetheine attachment site PDPE_RS00770 PF00698 Acyl transferase domain PDPE_RS00780 PF02504 Fatty acid synthesis protein PDPE_RS00785 PF01783 Ribosomal L32p protein family PDPE_RS00790 PF02620 Large ribosomal RNA subunit accumulation protein YceD PDPE_RS00795 PF02545 Maf-like protein PDPE_RS00805 PF01479 S4 domain PDPE_RS00805 PF00849 RNA pseudouridylate synthase PDPE_RS00810 PF12111 Polyribonucleotide phosphorylase C terminal PDPE_RS00810 PF10150 Ribonuclease E/G family PDPE_RS00810 PF00575 S1 RNA binding domain PDPE_RS00820 PF02277 Phosphoribosyltransferase PDPE_RS00830 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PDPE_RS00830 PF12557 Cob(I)alamin adenosyltransferase N terminal PDPE_RS00840 PF03605 Anaerobic c4-dicarboxylate membrane transporter PDPE_RS00845 PF00571 CBS domain PDPE_RS00850 PF03631 Virulence factor BrkB PDPE_RS00860 PF00692 dUTPase PDPE_RS00865 PF00485 Phosphoribulokinase / Uridine kinase family PDPE_RS00870 PF10609 NUBPL iron-transfer P-loop NTPase PDPE_RS00875 PF09334 tRNA synthetases class I (M) PDPE_RS00875 PF01588 Putative tRNA binding domain PDPE_RS00875 PF08264 Anticodon-binding domain of tRNA PDPE_RS00900 PF00375 Sodium:dicarboxylate symporter family PDPE_RS00910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PDPE_RS00910 PF02403 Seryl-tRNA synthetase N-terminal domain PDPE_RS00915 PF12002 MgsA AAA+ ATPase C terminal PDPE_RS00915 PF16193 AAA C-terminal domain PDPE_RS00915 PF00004 ATPase family associated with various cellular activities (AAA) PDPE_RS00920 PF03548 Outer membrane lipoprotein carrier protein LolA PDPE_RS00925 PF01580 FtsK/SpoIIIE family PDPE_RS00925 PF09397 Ftsk gamma domain PDPE_RS00925 PF17854 FtsK alpha domain PDPE_RS00925 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PDPE_RS00930 PF01037 Lrp/AsnC ligand binding domain PDPE_RS00955 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS00960 PF00005 ABC transporter PDPE_RS00960 PF00664 ABC transporter transmembrane region PDPE_RS00965 PF00664 ABC transporter transmembrane region PDPE_RS00965 PF00005 ABC transporter PDPE_RS00970 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PDPE_RS00975 PF04377 Arginine-tRNA-protein transferase, C terminus PDPE_RS00975 PF04376 Arginine-tRNA-protein transferase, N terminus PDPE_RS00980 PF01176 Translation initiation factor 1A / IF-1 PDPE_RS00985 PF00004 ATPase family associated with various cellular activities (AAA) PDPE_RS00985 PF07724 AAA domain (Cdc48 subfamily) PDPE_RS00985 PF17871 AAA lid domain PDPE_RS00985 PF02861 Clp amino terminal domain, pathogenicity island component PDPE_RS00985 PF10431 C-terminal, D2-small domain, of ClpB protein PDPE_RS00990 PF02617 ATP-dependent Clp protease adaptor protein ClpS PDPE_RS00995 PF00313 'Cold-shock' DNA-binding domain PDPE_RS01000 PF00180 Isocitrate/isopropylmalate dehydrogenase PDPE_RS01005 PF00849 RNA pseudouridylate synthase PDPE_RS01015 PF04356 Protein of unknown function (DUF489) PDPE_RS01020 PF00206 Lyase PDPE_RS01020 PF08328 Adenylosuccinate lyase C-terminal PDPE_RS01035 PF00258 Flavodoxin PDPE_RS01035 PF00301 Rubredoxin PDPE_RS01035 PF00753 Metallo-beta-lactamase superfamily PDPE_RS01070 PF00005 ABC transporter PDPE_RS01070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PDPE_RS01090 PF12911 N-terminal TM domain of oligopeptide transport permease C PDPE_RS01090 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS01095 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS01110 PF02391 MoaE protein PDPE_RS01115 PF02597 ThiS family PDPE_RS01120 PF01967 MoaC family PDPE_RS01125 PF06463 Molybdenum Cofactor Synthesis C PDPE_RS01125 PF04055 Radical SAM superfamily PDPE_RS01140 PF01933 Uncharacterised protein family UPF0052 PDPE_RS01145 PF01627 Hpt domain PDPE_RS01150 PF00158 Sigma-54 interaction domain PDPE_RS01150 PF02954 Bacterial regulatory protein, Fis family PDPE_RS01150 PF00072 Response regulator receiver domain PDPE_RS01155 PF00271 Helicase conserved C-terminal domain PDPE_RS01155 PF04851 Type III restriction enzyme, res subunit PDPE_RS01155 PF02151 UvrB/uvrC motif PDPE_RS01155 PF12344 Ultra-violet resistance protein B PDPE_RS01155 PF17757 UvrB interaction domain PDPE_RS01175 PF02508 Rnf-Nqr subunit, membrane protein PDPE_RS01180 PF04060 Putative Fe-S cluster PDPE_RS01185 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PDPE_RS01185 PF12838 4Fe-4S dicluster domain PDPE_RS01185 PF13375 RnfC Barrel sandwich hybrid domain PDPE_RS01185 PF10531 SLBB domain PDPE_RS01190 PF03116 NQR2, RnfD, RnfE family PDPE_RS01195 PF04205 FMN-binding domain PDPE_RS01200 PF02508 Rnf-Nqr subunit, membrane protein PDPE_RS01205 PF10576 Iron-sulfur binding domain of endonuclease III PDPE_RS01205 PF00633 Helix-hairpin-helix motif PDPE_RS01205 PF00730 HhH-GPD superfamily base excision DNA repair protein PDPE_RS01240 PF00929 Exonuclease PDPE_RS01245 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PDPE_RS01250 PF12262 Bacterial virulence factor lipase N-terminal PDPE_RS01255 PF00578 AhpC/TSA family PDPE_RS01255 PF10417 C-terminal domain of 1-Cys peroxiredoxin PDPE_RS01260 PF03553 Na+/H+ antiporter family PDPE_RS01260 PF13726 Na+-H+ antiporter family PDPE_RS01265 PF07073 Modulator of Rho-dependent transcription termination (ROF) PDPE_RS01270 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS01275 PF00462 Glutaredoxin PDPE_RS01280 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PDPE_RS01280 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PDPE_RS01285 PF02774 Semialdehyde dehydrogenase, dimerisation domain PDPE_RS01285 PF01118 Semialdehyde dehydrogenase, NAD binding domain PDPE_RS01290 PF03553 Na+/H+ antiporter family PDPE_RS01310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PDPE_RS01310 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II PDPE_RS01310 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase PDPE_RS01310 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PDPE_RS01310 PF10371 Domain of unknown function PDPE_RS01315 PF00258 Flavodoxin PDPE_RS01325 PF04245 37-kD nucleoid-associated bacterial protein PDPE_RS01330 PF07208 Protein of unknown function (DUF1414) PDPE_RS01335 PF11893 Domain of unknown function (DUF3413) PDPE_RS01335 PF00884 Sulfatase PDPE_RS01345 PF00360 Phytochrome region PDPE_RS01345 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS01345 PF01590 GAF domain PDPE_RS01345 PF00563 EAL domain PDPE_RS01360 PF01131 DNA topoisomerase PDPE_RS01360 PF01751 Toprim domain PDPE_RS01400 PF02769 AIR synthase related protein, C-terminal domain PDPE_RS01400 PF00586 AIR synthase related protein, N-terminal domain PDPE_RS01405 PF00881 Nitroreductase family PDPE_RS01410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PDPE_RS01410 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS01415 PF01343 Peptidase family S49 PDPE_RS01420 PF17763 Glutaminase/Asparaginase C-terminal domain PDPE_RS01420 PF00710 Asparaginase, N-terminal PDPE_RS01425 PF07023 Protein of unknown function (DUF1315) PDPE_RS01435 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS01440 PF01641 SelR domain PDPE_RS01445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PDPE_RS01445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PDPE_RS01450 PF01263 Aldose 1-epimerase PDPE_RS01460 PF08298 PrkA AAA domain PDPE_RS01460 PF06798 PrkA serine protein kinase C-terminal domain PDPE_RS01465 PF04285 Protein of unknown function (DUF444) PDPE_RS01470 PF04293 SpoVR like protein PDPE_RS01475 PF00392 Bacterial regulatory proteins, gntR family PDPE_RS01475 PF07840 FadR C-terminal domain PDPE_RS01480 PF06450 Bacterial Na+/H+ antiporter B (NhaB) PDPE_RS01485 PF02600 Disulfide bond formation protein DsbB PDPE_RS01490 PF07517 SecA DEAD-like domain PDPE_RS01490 PF07516 SecA Wing and Scaffold domain PDPE_RS01490 PF01043 SecA preprotein cross-linking domain PDPE_RS01490 PF02810 SEC-C motif PDPE_RS01495 PF01207 Dihydrouridine synthase (Dus) PDPE_RS01525 PF03692 Putative zinc- or iron-chelating domain PDPE_RS01530 PF03692 Putative zinc- or iron-chelating domain PDPE_RS01550 PF07690 Major Facilitator Superfamily PDPE_RS01555 PF13193 AMP-binding enzyme C-terminal domain PDPE_RS01555 PF00501 AMP-binding enzyme PDPE_RS01560 PF13378 Enolase C-terminal domain-like PDPE_RS01565 PF12697 Alpha/beta hydrolase family PDPE_RS01570 PF16582 Middle domain of thiamine pyrophosphate PDPE_RS01570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PDPE_RS01575 PF00425 chorismate binding enzyme PDPE_RS01580 PF00155 Aminotransferase class I and II PDPE_RS01590 PF01966 HD domain PDPE_RS01590 PF13286 Phosphohydrolase-associated domain PDPE_RS01620 PF10531 SLBB domain PDPE_RS01625 PF13145 PPIC-type PPIASE domain PDPE_RS01630 PF00216 Bacterial DNA-binding protein PDPE_RS01635 PF00004 ATPase family associated with various cellular activities (AAA) PDPE_RS01635 PF05362 Lon protease (S16) C-terminal proteolytic domain PDPE_RS01635 PF02190 ATP-dependent protease La (LON) substrate-binding domain PDPE_RS01640 PF10431 C-terminal, D2-small domain, of ClpB protein PDPE_RS01640 PF07724 AAA domain (Cdc48 subfamily) PDPE_RS01640 PF06689 ClpX C4-type zinc finger PDPE_RS01645 PF00574 Clp protease PDPE_RS01650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PDPE_RS01650 PF05698 Bacterial trigger factor protein (TF) C-terminus PDPE_RS01650 PF05697 Bacterial trigger factor protein (TF) PDPE_RS01660 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PDPE_RS01660 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PDPE_RS01665 PF00483 Nucleotidyl transferase PDPE_RS01680 PF00072 Response regulator receiver domain PDPE_RS01685 PF03466 LysR substrate binding domain PDPE_RS01685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS01690 PF00156 Phosphoribosyl transferase domain PDPE_RS01695 PF02674 Colicin V production protein PDPE_RS01700 PF05036 Sporulation related domain PDPE_RS01705 PF08245 Mur ligase middle domain PDPE_RS01705 PF02875 Mur ligase family, glutamate ligase domain PDPE_RS01710 PF17848 Acetyl-coA carboxylase zinc finger domain PDPE_RS01710 PF01039 Carboxyl transferase domain PDPE_RS01715 PF01416 tRNA pseudouridine synthase PDPE_RS01740 PF02774 Semialdehyde dehydrogenase, dimerisation domain PDPE_RS01740 PF01118 Semialdehyde dehydrogenase, NAD binding domain PDPE_RS01745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDPE_RS01745 PF11890 Domain of unknown function (DUF3410) PDPE_RS01745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PDPE_RS01750 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PDPE_RS01750 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PDPE_RS01750 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PDPE_RS01755 PF02801 Beta-ketoacyl synthase, C-terminal domain PDPE_RS01755 PF00109 Beta-ketoacyl synthase, N-terminal domain PDPE_RS01760 PF01266 FAD dependent oxidoreductase PDPE_RS01760 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PDPE_RS01780 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PDPE_RS01780 PF02563 Polysaccharide biosynthesis/export protein PDPE_RS01780 PF10531 SLBB domain PDPE_RS01795 PF00691 OmpA family PDPE_RS01795 PF05736 OprF membrane domain PDPE_RS01800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS01810 PF00953 Glycosyl transferase family 4 PDPE_RS01815 PF02706 Chain length determinant protein PDPE_RS01820 PF08891 YfcL protein PDPE_RS01825 PF04315 Elongation factor P hydroxylase PDPE_RS01830 PF03458 UPF0126 domain PDPE_RS01835 PF01264 Chorismate synthase PDPE_RS01840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PDPE_RS01840 PF02378 Phosphotransferase system, EIIC PDPE_RS01840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PDPE_RS01845 PF02253 Phospholipase A1 PDPE_RS01850 PF01238 Phosphomannose isomerase type I PDPE_RS01855 PF12833 Helix-turn-helix domain PDPE_RS01865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PDPE_RS01870 PF00873 AcrB/AcrD/AcrF family PDPE_RS01905 PF00072 Response regulator receiver domain PDPE_RS01920 PF04226 Transglycosylase associated protein PDPE_RS01925 PF03372 Endonuclease/Exonuclease/phosphatase family PDPE_RS01930 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding PDPE_RS01930 PF18381 YcaO cyclodehydratase C-terminal domain PDPE_RS01935 PF01226 Formate/nitrite transporter PDPE_RS01940 PF01228 Glycine radical PDPE_RS01940 PF02901 Pyruvate formate lyase-like PDPE_RS01945 PF12392 Collagenase PDPE_RS01945 PF01136 Peptidase family U32 PDPE_RS01950 PF12392 Collagenase PDPE_RS01950 PF01136 Peptidase family U32 PDPE_RS01955 PF04055 Radical SAM superfamily PDPE_RS01960 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS01995 PF02954 Bacterial regulatory protein, Fis family PDPE_RS01995 PF14532 Sigma-54 interaction domain PDPE_RS01995 PF00072 Response regulator receiver domain PDPE_RS02000 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PDPE_RS02005 PF00267 Gram-negative porin PDPE_RS02010 PF13847 Methyltransferase domain PDPE_RS02025 PF00871 Acetokinase family PDPE_RS02030 PF01515 Phosphate acetyl/butaryl transferase PDPE_RS02030 PF07085 DRTGG domain PDPE_RS02040 PF08338 Domain of unknown function (DUF1731) PDPE_RS02040 PF01370 NAD dependent epimerase/dehydratase family PDPE_RS02045 PF00106 short chain dehydrogenase PDPE_RS02050 PF00085 Thioredoxin PDPE_RS02060 PF00691 OmpA family PDPE_RS02060 PF01389 OmpA-like transmembrane domain PDPE_RS02065 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS02080 PF00403 Heavy-metal-associated domain PDPE_RS02085 PF01963 TraB family PDPE_RS02090 PF01713 Smr domain PDPE_RS02105 PF04073 Aminoacyl-tRNA editing domain PDPE_RS02130 PF00793 DAHP synthetase I family PDPE_RS02135 PF13369 Transglutaminase-like superfamily PDPE_RS02140 PF04247 Invasion gene expression up-regulator, SirB PDPE_RS02145 PF13847 Methyltransferase domain PDPE_RS02145 PF17827 PrmC N-terminal domain PDPE_RS02150 PF00472 RF-1 domain PDPE_RS02150 PF03462 PCRF domain PDPE_RS02155 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PDPE_RS02155 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PDPE_RS02155 PF01488 Shikimate / quinate 5-dehydrogenase PDPE_RS02160 PF03550 Outer membrane lipoprotein LolB PDPE_RS02165 PF08544 GHMP kinases C terminal PDPE_RS02165 PF00288 GHMP kinases N terminal domain PDPE_RS02170 PF14572 Phosphoribosyl synthetase-associated domain PDPE_RS02170 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PDPE_RS02175 PF01195 Peptidyl-tRNA hydrolase PDPE_RS02180 PF06071 Protein of unknown function (DUF933) PDPE_RS02180 PF01926 50S ribosome-binding GTPase PDPE_RS02265 PF01494 FAD binding domain PDPE_RS02270 PF00912 Transglycosylase PDPE_RS02275 PF01938 TRAM domain PDPE_RS02275 PF00919 Uncharacterized protein family UPF0004 PDPE_RS02275 PF04055 Radical SAM superfamily PDPE_RS02280 PF02562 PhoH-like protein PDPE_RS02285 PF02130 Uncharacterized protein family UPF0054 PDPE_RS02290 PF03471 Transporter associated domain PDPE_RS02290 PF00571 CBS domain PDPE_RS02295 PF00795 Carbon-nitrogen hydrolase PDPE_RS02310 PF07295 Zinc-ribbon containing domain PDPE_RS02315 PF13603 Leucyl-tRNA synthetase, Domain 2 PDPE_RS02315 PF00133 tRNA synthetases class I (I, L, M and V) PDPE_RS02315 PF08264 Anticodon-binding domain of tRNA PDPE_RS02320 PF04390 Lipopolysaccharide-assembly PDPE_RS02325 PF06144 DNA polymerase III, delta subunit PDPE_RS02325 PF14840 Processivity clamp loader gamma complex DNA pol III C-term PDPE_RS02335 PF02590 Predicted SPOUT methyltransferase PDPE_RS02340 PF03717 Penicillin-binding Protein dimerisation domain PDPE_RS02340 PF00905 Penicillin binding protein transpeptidase domain PDPE_RS02345 PF01098 Cell cycle protein PDPE_RS02350 PF05036 Sporulation related domain PDPE_RS02350 PF03330 Lytic transglycolase PDPE_RS02360 PF07943 Penicillin-binding protein 5, C-terminal domain PDPE_RS02360 PF00768 D-alanyl-D-alanine carboxypeptidase PDPE_RS02365 PF04359 Protein of unknown function (DUF493) PDPE_RS02370 PF03099 Biotin/lipoate A/B protein ligase family PDPE_RS02375 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PDPE_RS02375 PF04055 Radical SAM superfamily PDPE_RS02380 PF06804 NlpB/DapX lipoprotein PDPE_RS02385 PF00701 Dihydrodipicolinate synthetase family PDPE_RS02390 PF01842 ACT domain PDPE_RS02400 PF14319 Transposase zinc-binding domain PDPE_RS02400 PF04986 Putative transposase PDPE_RS02405 PF00578 AhpC/TSA family PDPE_RS02410 PF01594 AI-2E family transporter PDPE_RS02420 PF13181 Tetratricopeptide repeat PDPE_RS02420 PF01435 Peptidase family M48 PDPE_RS02425 PF03960 ArsC family PDPE_RS02430 PF03358 NADPH-dependent FMN reductase PDPE_RS02445 PF00860 Permease family PDPE_RS02465 PF00529 HlyD membrane-fusion protein of T1SS PDPE_RS02465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PDPE_RS02480 PF00586 AIR synthase related protein, N-terminal domain PDPE_RS02480 PF02769 AIR synthase related protein, C-terminal domain PDPE_RS02485 PF00551 Formyl transferase PDPE_RS02490 PF13230 Glutamine amidotransferases class-II PDPE_RS02495 PF13580 SIS domain PDPE_RS02500 PF01740 STAS domain PDPE_RS02500 PF00916 Sulfate permease family PDPE_RS02520 PF00929 Exonuclease PDPE_RS02525 PF00075 RNase H PDPE_RS02530 PF08241 Methyltransferase domain PDPE_RS02535 PF00753 Metallo-beta-lactamase superfamily PDPE_RS02535 PF16123 Hydroxyacylglutathione hydrolase C-terminus PDPE_RS02540 PF01476 LysM domain PDPE_RS02540 PF01464 Transglycosylase SLT domain PDPE_RS02600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PDPE_RS02605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PDPE_RS02605 PF00005 ABC transporter PDPE_RS02610 PF00005 ABC transporter PDPE_RS02610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PDPE_RS02615 PF12911 N-terminal TM domain of oligopeptide transport permease C PDPE_RS02615 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS02620 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS02635 PF00005 ABC transporter PDPE_RS02635 PF09383 NIL domain PDPE_RS02645 PF03180 NLPA lipoprotein PDPE_RS02650 PF00444 Ribosomal protein L36 PDPE_RS02655 PF01197 Ribosomal protein L31 PDPE_RS02660 PF01980 tRNA-methyltransferase O PDPE_RS02660 PF18389 TrmO C-terminal domain PDPE_RS02665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PDPE_RS02665 PF04073 Aminoacyl-tRNA editing domain PDPE_RS02665 PF03129 Anticodon binding domain PDPE_RS02670 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS02675 PF06786 Uncharacterised protein family (UPF0253) PDPE_RS02700 PF03222 Tryptophan/tyrosine permease family PDPE_RS02705 PF07478 D-ala D-ala ligase C-terminus PDPE_RS02705 PF01820 D-ala D-ala ligase N-terminus PDPE_RS02710 PF01171 PP-loop family PDPE_RS02710 PF11734 TilS substrate C-terminal domain PDPE_RS02710 PF09179 TilS substrate binding domain PDPE_RS02715 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PDPE_RS02720 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PDPE_RS02720 PF14579 Helix-hairpin-helix motif PDPE_RS02720 PF02811 PHP domain PDPE_RS02720 PF01336 OB-fold nucleic acid binding domain PDPE_RS02720 PF07733 Bacterial DNA polymerase III alpha NTPase domain PDPE_RS02725 PF01351 Ribonuclease HII PDPE_RS02730 PF02684 Lipid-A-disaccharide synthetase PDPE_RS02735 PF00132 Bacterial transferase hexapeptide (six repeats) PDPE_RS02735 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PDPE_RS02740 PF07977 FabA-like domain PDPE_RS02745 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PDPE_RS02745 PF00132 Bacterial transferase hexapeptide (six repeats) PDPE_RS02750 PF03938 Outer membrane protein (OmpH-like) PDPE_RS02755 PF01103 Surface antigen PDPE_RS02755 PF07244 Surface antigen variable number repeat PDPE_RS02760 PF02163 Peptidase family M50 PDPE_RS02760 PF17820 PDZ domain PDPE_RS02765 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PDPE_RS02765 PF13288 DXP reductoisomerase C-terminal domain PDPE_RS02765 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PDPE_RS02775 PF01255 Putative undecaprenyl diphosphate synthase PDPE_RS02780 PF01765 Ribosome recycling factor PDPE_RS02785 PF00696 Amino acid kinase family PDPE_RS02790 PF00889 Elongation factor TS PDPE_RS02795 PF00318 Ribosomal protein S2 PDPE_RS02800 PF00557 Metallopeptidase family M24 PDPE_RS02805 PF01966 HD domain PDPE_RS02805 PF08335 GlnD PII-uridylyltransferase PDPE_RS02805 PF01909 Nucleotidyltransferase domain PDPE_RS02805 PF01842 ACT domain PDPE_RS02810 PF00258 Flavodoxin PDPE_RS02815 PF00849 RNA pseudouridylate synthase PDPE_RS02820 PF04287 tRNA pseudouridine synthase C PDPE_RS02835 PF00158 Sigma-54 interaction domain PDPE_RS02835 PF01590 GAF domain PDPE_RS02865 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) PDPE_RS02870 PF07348 Syd protein (SUKH-2) PDPE_RS02875 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PDPE_RS02875 PF14489 QueF-like protein PDPE_RS02900 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS02915 PF03641 Possible lysine decarboxylase PDPE_RS02915 PF11892 Domain of unknown function (DUF3412) PDPE_RS02915 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases PDPE_RS02920 PF01367 5'-3' exonuclease, C-terminal SAM fold PDPE_RS02920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PDPE_RS02925 PF18125 RlmM ferredoxin-like domain PDPE_RS02925 PF01728 FtsJ-like methyltransferase PDPE_RS02930 PF04241 Protein of unknown function (DUF423) PDPE_RS02940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS02940 PF03466 LysR substrate binding domain PDPE_RS02945 PF00266 Aminotransferase class-V PDPE_RS02950 PF02657 Fe-S metabolism associated domain PDPE_RS02960 PF00899 ThiF family PDPE_RS02965 PF06725 3D domain PDPE_RS02965 PF03562 MltA specific insert domain PDPE_RS02970 PF00583 Acetyltransferase (GNAT) family PDPE_RS02970 PF00696 Amino acid kinase family PDPE_RS02980 PF13538 UvrD-like helicase C-terminal domain PDPE_RS02985 PF13361 UvrD-like helicase C-terminal domain PDPE_RS02985 PF00580 UvrD/REP helicase N-terminal domain PDPE_RS02985 PF12705 PD-(D/E)XK nuclease superfamily PDPE_RS02990 PF17946 RecC C-terminal domain PDPE_RS03000 PF03466 LysR substrate binding domain PDPE_RS03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS03010 PF07130 YebG protein PDPE_RS03015 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle PDPE_RS03015 PF14602 Hexapeptide repeat of succinyl-transferase PDPE_RS03020 PF13520 Amino acid permease PDPE_RS03025 PF04960 Glutaminase PDPE_RS03030 PF00282 Pyridoxal-dependent decarboxylase conserved domain PDPE_RS03035 PF03458 UPF0126 domain PDPE_RS03070 PF10431 C-terminal, D2-small domain, of ClpB protein PDPE_RS03070 PF02861 Clp amino terminal domain, pathogenicity island component PDPE_RS03070 PF07724 AAA domain (Cdc48 subfamily) PDPE_RS03070 PF17871 AAA lid domain PDPE_RS03070 PF00004 ATPase family associated with various cellular activities (AAA) PDPE_RS03075 PF02578 Multi-copper polyphenol oxidoreductase laccase PDPE_RS03080 PF00849 RNA pseudouridylate synthase PDPE_RS03080 PF01479 S4 domain PDPE_RS03085 PF13525 Outer membrane lipoprotein PDPE_RS03090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PDPE_RS03095 PF01817 Chorismate mutase type II PDPE_RS03095 PF00800 Prephenate dehydratase PDPE_RS03100 PF01817 Chorismate mutase type II PDPE_RS03100 PF02153 Prephenate dehydrogenase PDPE_RS03105 PF00793 DAHP synthetase I family PDPE_RS03115 PF00072 Response regulator receiver domain PDPE_RS03115 PF04397 LytTr DNA-binding domain PDPE_RS03125 PF02554 Carbon starvation protein CstA PDPE_RS03135 PF01245 Ribosomal protein L19 PDPE_RS03140 PF01746 tRNA (Guanine-1)-methyltransferase PDPE_RS03145 PF01782 RimM N-terminal domain PDPE_RS03145 PF05239 PRC-barrel domain PDPE_RS03150 PF00886 Ribosomal protein S16 PDPE_RS03155 PF02978 Signal peptide binding domain PDPE_RS03155 PF02881 SRP54-type protein, helical bundle domain PDPE_RS03155 PF00448 SRP54-type protein, GTPase domain PDPE_RS03160 PF01578 Cytochrome C assembly protein PDPE_RS03165 PF00571 CBS domain PDPE_RS03165 PF03471 Transporter associated domain PDPE_RS03165 PF01595 Cyclin M transmembrane N-terminal domain PDPE_RS03170 PF02664 S-Ribosylhomocysteinase (LuxS) PDPE_RS03180 PF04262 Glutamate-cysteine ligase PDPE_RS03185 PF05193 Peptidase M16 inactive domain PDPE_RS03185 PF00675 Insulinase (Peptidase family M16) PDPE_RS03195 PF14765 Polyketide synthase dehydratase PDPE_RS03195 PF02801 Beta-ketoacyl synthase, C-terminal domain PDPE_RS03195 PF08240 Alcohol dehydrogenase GroES-like domain PDPE_RS03195 PF00698 Acyl transferase domain PDPE_RS03195 PF08659 KR domain PDPE_RS03195 PF16197 Ketoacyl-synthetase C-terminal extension PDPE_RS03195 PF00109 Beta-ketoacyl synthase, N-terminal domain PDPE_RS03195 PF00550 Phosphopantetheine attachment site PDPE_RS03260 PF02599 Global regulator protein family PDPE_RS03265 PF00696 Amino acid kinase family PDPE_RS03265 PF01842 ACT domain PDPE_RS03265 PF13840 ACT domain PDPE_RS03270 PF01411 tRNA synthetases class II (A) PDPE_RS03270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PDPE_RS03270 PF02272 DHHA1 domain PDPE_RS03275 PF07885 Ion channel PDPE_RS03275 PF02254 TrkA-N domain PDPE_RS03300 PF02464 Competence-damaged protein PDPE_RS03305 PF01624 MutS domain I PDPE_RS03305 PF05190 MutS family domain IV PDPE_RS03305 PF00488 MutS domain V PDPE_RS03305 PF05188 MutS domain II PDPE_RS03305 PF05192 MutS domain III PDPE_RS03310 PF04539 Sigma-70 region 3 PDPE_RS03310 PF04545 Sigma-70, region 4 PDPE_RS03310 PF04542 Sigma-70 region 2 PDPE_RS03310 PF00140 Sigma-70 factor, region 1.2 PDPE_RS03315 PF01551 Peptidase family M23 PDPE_RS03315 PF01476 LysM domain PDPE_RS03325 PF01142 tRNA pseudouridine synthase D (TruD) PDPE_RS03330 PF02542 YgbB family PDPE_RS03335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PDPE_RS03340 PF04977 Septum formation initiator PDPE_RS03345 PF00113 Enolase, C-terminal TIM barrel domain PDPE_RS03345 PF03952 Enolase, N-terminal domain PDPE_RS03350 PF00117 Glutamine amidotransferase class-I PDPE_RS03350 PF06418 CTP synthase N-terminus PDPE_RS03355 PF03819 MazG nucleotide pyrophosphohydrolase domain PDPE_RS03360 PF02824 TGS domain PDPE_RS03360 PF13291 ACT domain PDPE_RS03360 PF04607 Region found in RelA / SpoT proteins PDPE_RS03365 PF05958 tRNA (Uracil-5-)-methyltransferase PDPE_RS03365 PF01938 TRAM domain PDPE_RS03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS03370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PDPE_RS03370 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS03370 PF00072 Response regulator receiver domain PDPE_RS03370 PF00672 HAMP domain PDPE_RS03370 PF01627 Hpt domain PDPE_RS03375 PF01648 4'-phosphopantetheinyl transferase superfamily PDPE_RS03380 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PDPE_RS03385 PF02565 Recombination protein O C terminal PDPE_RS03385 PF11967 Recombination protein O N terminal PDPE_RS03390 PF01926 50S ribosome-binding GTPase PDPE_RS03390 PF07650 KH domain PDPE_RS03395 PF14622 Ribonuclease-III-like PDPE_RS03395 PF00035 Double-stranded RNA binding motif PDPE_RS03400 PF10502 Signal peptidase, peptidase S26 PDPE_RS03405 PF06421 GTP-binding protein LepA C-terminus PDPE_RS03405 PF03144 Elongation factor Tu domain 2 PDPE_RS03405 PF00679 Elongation factor G C-terminus PDPE_RS03405 PF00009 Elongation factor Tu GTP binding domain PDPE_RS03415 PF03888 MucB/RseB N-terminal domain PDPE_RS03415 PF17188 MucB/RseB C-terminal domain PDPE_RS03420 PF03872 Anti sigma-E protein RseA, N-terminal domain PDPE_RS03420 PF03873 Anti sigma-E protein RseA, C-terminal domain PDPE_RS03425 PF08281 Sigma-70, region 4 PDPE_RS03425 PF04542 Sigma-70 region 2 PDPE_RS03430 PF02910 Fumarate reductase flavoprotein C-term PDPE_RS03430 PF00890 FAD binding domain PDPE_RS03440 PF03937 Flavinator of succinate dehydrogenase PDPE_RS03460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS03460 PF03466 LysR substrate binding domain PDPE_RS03465 PF04400 (Na+)-NQR maturation NqrM PDPE_RS03475 PF02001 Protein of unknown function DUF134 PDPE_RS03485 PF01597 Glycine cleavage H-protein PDPE_RS03490 PF01494 FAD binding domain PDPE_RS03495 PF01494 FAD binding domain PDPE_RS03500 PF03695 Uncharacterised protein family (UPF0149) PDPE_RS03515 PF01812 5-formyltetrahydrofolate cyclo-ligase family PDPE_RS03525 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PDPE_RS03535 PF01842 ACT domain PDPE_RS03535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDPE_RS03535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PDPE_RS03540 PF04402 Protein of unknown function (DUF541) PDPE_RS03550 PF05552 Conserved TM helix PDPE_RS03550 PF00924 Mechanosensitive ion channel PDPE_RS03555 PF01116 Fructose-bisphosphate aldolase class-II PDPE_RS03560 PF00162 Phosphoglycerate kinase PDPE_RS03570 PF00456 Transketolase, thiamine diphosphate binding domain PDPE_RS03570 PF02780 Transketolase, C-terminal domain PDPE_RS03570 PF02779 Transketolase, pyrimidine binding domain PDPE_RS03575 PF00438 S-adenosylmethionine synthetase, N-terminal domain PDPE_RS03575 PF02773 S-adenosylmethionine synthetase, C-terminal domain PDPE_RS03575 PF02772 S-adenosylmethionine synthetase, central domain PDPE_RS03585 PF17283 SprT-like zinc ribbon domain PDPE_RS03585 PF10263 SprT-like family PDPE_RS03590 PF04231 Endonuclease I PDPE_RS03595 PF04452 RNA methyltransferase PDPE_RS03600 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PDPE_RS03600 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PDPE_RS03605 PF02622 Uncharacterized ACR, COG1678 PDPE_RS03610 PF03652 Holliday junction resolvase PDPE_RS03615 PF00437 Type II/IV secretion system protein PDPE_RS03620 PF00437 Type II/IV secretion system protein PDPE_RS03625 PF01168 Alanine racemase, N-terminal domain PDPE_RS03630 PF03807 NADP oxidoreductase coenzyme F420-dependent PDPE_RS03630 PF14748 Pyrroline-5-carboxylate reductase dimerisation PDPE_RS03635 PF02325 YGGT family PDPE_RS03640 PF02594 Uncharacterised ACR, YggU family COG1872 PDPE_RS03645 PF01725 Ham1 family PDPE_RS03650 PF06969 HemN C-terminal domain PDPE_RS03650 PF04055 Radical SAM superfamily PDPE_RS03660 PF04960 Glutaminase PDPE_RS03665 PF02390 Putative methyltransferase PDPE_RS03670 PF14815 NUDIX domain PDPE_RS03670 PF10576 Iron-sulfur binding domain of endonuclease III PDPE_RS03670 PF00730 HhH-GPD superfamily base excision DNA repair protein PDPE_RS03670 PF00633 Helix-hairpin-helix motif PDPE_RS03675 PF04362 Bacterial Fe(2+) trafficking PDPE_RS03730 PF00912 Transglycosylase PDPE_RS03730 PF14814 Bifunctional transglycosylase second domain PDPE_RS03730 PF00905 Penicillin binding protein transpeptidase domain PDPE_RS03735 PF04408 Helicase associated domain (HA2) PDPE_RS03735 PF00270 DEAD/DEAH box helicase PDPE_RS03735 PF00271 Helicase conserved C-terminal domain PDPE_RS03735 PF08482 ATP-dependent helicase C-terminal PDPE_RS03740 PF17746 SfsA N-terminal OB domain PDPE_RS03740 PF03749 Sugar fermentation stimulation protein RE domain PDPE_RS03745 PF01258 Prokaryotic dksA/traR C4-type zinc finger PDPE_RS03750 PF00749 tRNA synthetases class I (E and Q), catalytic domain PDPE_RS03755 PF12626 Polymerase A arginine-rich C-terminus PDPE_RS03755 PF12627 Probable RNA and SrmB- binding site of polymerase A PDPE_RS03755 PF01743 Poly A polymerase head domain PDPE_RS03760 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PDPE_RS03765 PF02548 Ketopantoate hydroxymethyltransferase PDPE_RS03770 PF02569 Pantoate-beta-alanine ligase PDPE_RS03780 PF00005 ABC transporter PDPE_RS03785 PF00484 Carbonic anhydrase PDPE_RS03790 PF00156 Phosphoribosyl transferase domain PDPE_RS03795 PF00440 Bacterial regulatory proteins, tetR family PDPE_RS03800 PF08402 TOBE domain PDPE_RS03800 PF00005 ABC transporter PDPE_RS03805 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS03815 PF00909 Ammonium Transporter Family PDPE_RS03820 PF00543 Nitrogen regulatory protein P-II PDPE_RS03825 PF06062 Uncharacterised protein family (UPF0231) PDPE_RS03830 PF05651 Putative sugar diacid recognition PDPE_RS03830 PF13556 PucR C-terminal helix-turn-helix domain PDPE_RS03830 PF17853 GGDEF-like domain PDPE_RS03835 PF02447 GntP family permease PDPE_RS03840 PF02595 Glycerate kinase family PDPE_RS03875 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS03875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PDPE_RS03880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PDPE_RS03880 PF00364 Biotin-requiring enzyme PDPE_RS03880 PF02817 e3 binding domain PDPE_RS03885 PF17831 Pyruvate dehydrogenase E1 component middle domain PDPE_RS03885 PF00456 Transketolase, thiamine diphosphate binding domain PDPE_RS03895 PF01510 N-acetylmuramoyl-L-alanine amidase PDPE_RS03900 PF00114 Pilin (bacterial filament) PDPE_RS03900 PF07963 Prokaryotic N-terminal methylation motif PDPE_RS03905 PF00437 Type II/IV secretion system protein PDPE_RS03905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PDPE_RS03920 PF01478 Type IV leader peptidase family PDPE_RS03920 PF06750 Bacterial Peptidase A24 N-terminal domain PDPE_RS03925 PF01121 Dephospho-CoA kinase PDPE_RS03930 PF07072 Cell division protein PDPE_RS03935 PF03884 DNA gyrase inhibitor YacG PDPE_RS03940 PF00293 NUDIX domain PDPE_RS03945 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS03960 PF07517 SecA DEAD-like domain PDPE_RS03960 PF07516 SecA Wing and Scaffold domain PDPE_RS03960 PF01043 SecA preprotein cross-linking domain PDPE_RS03960 PF02810 SEC-C motif PDPE_RS03970 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PDPE_RS03975 PF00091 Tubulin/FtsZ family, GTPase domain PDPE_RS03975 PF12327 FtsZ family, C-terminal domain PDPE_RS03980 PF02491 SHS2 domain inserted in FTSA PDPE_RS03985 PF08478 POTRA domain, FtsQ-type PDPE_RS03985 PF03799 Cell division protein FtsQ PDPE_RS03990 PF08245 Mur ligase middle domain PDPE_RS03990 PF01225 Mur ligase family, catalytic domain PDPE_RS03990 PF02875 Mur ligase family, glutamate ligase domain PDPE_RS03995 PF03033 Glycosyltransferase family 28 N-terminal domain PDPE_RS03995 PF04101 Glycosyltransferase family 28 C-terminal domain PDPE_RS04005 PF02875 Mur ligase family, glutamate ligase domain PDPE_RS04005 PF08245 Mur ligase middle domain PDPE_RS04010 PF00953 Glycosyl transferase family 4 PDPE_RS04010 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PDPE_RS04015 PF08245 Mur ligase middle domain PDPE_RS04015 PF02875 Mur ligase family, glutamate ligase domain PDPE_RS04015 PF01225 Mur ligase family, catalytic domain PDPE_RS04020 PF08245 Mur ligase middle domain PDPE_RS04020 PF01225 Mur ligase family, catalytic domain PDPE_RS04020 PF02875 Mur ligase family, glutamate ligase domain PDPE_RS04025 PF00905 Penicillin binding protein transpeptidase domain PDPE_RS04025 PF03717 Penicillin-binding Protein dimerisation domain PDPE_RS04030 PF04999 Cell division protein FtsL PDPE_RS04035 PF01795 MraW methylase family PDPE_RS04045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PDPE_RS04050 PF04348 LppC putative lipoprotein PDPE_RS04055 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PDPE_RS04055 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PDPE_RS04060 PF02021 Uncharacterised protein family UPF0102 PDPE_RS04065 PF13580 SIS domain PDPE_RS04070 PF04972 BON domain PDPE_RS04075 PF04386 Stringent starvation protein B PDPE_RS04080 PF02798 Glutathione S-transferase, N-terminal domain PDPE_RS04080 PF00043 Glutathione S-transferase, C-terminal domain PDPE_RS04095 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PDPE_RS04095 PF00355 Rieske [2Fe-2S] domain PDPE_RS04100 PF00380 Ribosomal protein S9/S16 PDPE_RS04105 PF00572 Ribosomal protein L13 PDPE_RS04110 PF03969 AFG1-like ATPase PDPE_RS04115 PF06295 Protein of unknown function (DUF1043) PDPE_RS04120 PF00595 PDZ domain PDPE_RS04125 PF13180 PDZ domain PDPE_RS04130 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS04135 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PDPE_RS04140 PF01722 BolA-like protein PDPE_RS04150 PF05494 MlaC protein PDPE_RS04155 PF02470 MlaD protein PDPE_RS04160 PF02405 Permease MlaE PDPE_RS04165 PF00005 ABC transporter PDPE_RS04170 PF01699 Sodium/calcium exchanger protein PDPE_RS04175 PF00571 CBS domain PDPE_RS04175 PF01380 SIS domain PDPE_RS04185 PF06835 Lipopolysaccharide-assembly, LptC-related PDPE_RS04190 PF03968 OstA-like protein PDPE_RS04195 PF00005 ABC transporter PDPE_RS04195 PF12399 Branched-chain amino acid ATP-binding cassette transporter PDPE_RS04200 PF00309 Sigma-54 factor, Activator interacting domain (AID) PDPE_RS04200 PF04552 Sigma-54, DNA binding domain PDPE_RS04200 PF04963 Sigma-54 factor, core binding domain PDPE_RS04205 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PDPE_RS04210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PDPE_RS04215 PF03668 P-loop ATPase protein family PDPE_RS04220 PF00381 PTS HPr component phosphorylation site PDPE_RS04225 PF03448 MgtE intracellular N domain PDPE_RS04225 PF01769 Divalent cation transporter PDPE_RS04225 PF00571 CBS domain PDPE_RS04230 PF01523 Putative modulator of DNA gyrase PDPE_RS04235 PF04751 Protein of unknown function (DUF615) PDPE_RS04240 PF01523 Putative modulator of DNA gyrase PDPE_RS04250 PF13116 Protein of unknown function PDPE_RS04250 PF13502 AsmA-like C-terminal region PDPE_RS04255 PF00575 S1 RNA binding domain PDPE_RS04255 PF10150 Ribonuclease E/G family PDPE_RS04260 PF02545 Maf-like protein PDPE_RS04265 PF04093 rod shape-determining protein MreD PDPE_RS04270 PF04085 rod shape-determining protein MreC PDPE_RS04320 PF13276 HTH-like domain PDPE_RS04320 PF00665 Integrase core domain PDPE_RS04320 PF13333 Integrase core domain PDPE_RS04325 PF01527 Transposase PDPE_RS04340 PF13538 UvrD-like helicase C-terminal domain PDPE_RS04340 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain PDPE_RS04340 PF14490 Helix-hairpin-helix containing domain PDPE_RS04360 PF02796 Helix-turn-helix domain of resolvase PDPE_RS04360 PF00239 Resolvase, N terminal domain PDPE_RS04365 PF01527 Transposase PDPE_RS04370 PF13333 Integrase core domain PDPE_RS04370 PF00665 Integrase core domain PDPE_RS04370 PF13276 HTH-like domain PDPE_RS04410 PF00436 Single-strand binding protein family PDPE_RS04415 PF00005 ABC transporter PDPE_RS04415 PF17755 UvrA DNA-binding domain PDPE_RS04415 PF17760 UvrA interaction domain PDPE_RS04425 PF00266 Aminotransferase class-V PDPE_RS04430 PF00696 Amino acid kinase family PDPE_RS04430 PF01842 ACT domain PDPE_RS04435 PF02310 B12 binding domain PDPE_RS04435 PF02965 Vitamin B12 dependent methionine synthase, activation domain PDPE_RS04435 PF02607 B12 binding domain PDPE_RS04435 PF00809 Pterin binding enzyme PDPE_RS04435 PF02574 Homocysteine S-methyltransferase PDPE_RS04440 PF00999 Sodium/hydrogen exchanger family PDPE_RS04445 PF04204 Homoserine O-succinyltransferase PDPE_RS04490 PF13439 Glycosyltransferase Family 4 PDPE_RS04490 PF00534 Glycosyl transferases group 1 PDPE_RS04520 PF13439 Glycosyltransferase Family 4 PDPE_RS04520 PF00534 Glycosyl transferases group 1 PDPE_RS04525 PF02397 Bacterial sugar transferase PDPE_RS04540 PF10531 SLBB domain PDPE_RS04540 PF02563 Polysaccharide biosynthesis/export protein PDPE_RS04550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS04550 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS04550 PF09456 RcsC Alpha-Beta-Loop (ABL) PDPE_RS04550 PF00072 Response regulator receiver domain PDPE_RS04565 PF01196 Ribosomal protein L17 PDPE_RS04570 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PDPE_RS04570 PF01000 RNA polymerase Rpb3/RpoA insert domain PDPE_RS04570 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PDPE_RS04575 PF00163 Ribosomal protein S4/S9 N-terminal domain PDPE_RS04575 PF01479 S4 domain PDPE_RS04580 PF00411 Ribosomal protein S11 PDPE_RS04585 PF00416 Ribosomal protein S13/S18 PDPE_RS04590 PF00444 Ribosomal protein L36 PDPE_RS04595 PF00344 SecY translocase PDPE_RS04600 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PDPE_RS04605 PF00327 Ribosomal protein L30p/L7e PDPE_RS04610 PF03719 Ribosomal protein S5, C-terminal domain PDPE_RS04610 PF00333 Ribosomal protein S5, N-terminal domain PDPE_RS04615 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PDPE_RS04620 PF00347 Ribosomal protein L6 PDPE_RS04625 PF00410 Ribosomal protein S8 PDPE_RS04630 PF00253 Ribosomal protein S14p/S29e PDPE_RS04635 PF00673 ribosomal L5P family C-terminus PDPE_RS04635 PF00281 Ribosomal protein L5 PDPE_RS04640 PF00467 KOW motif PDPE_RS04640 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PDPE_RS04645 PF00238 Ribosomal protein L14p/L23e PDPE_RS04650 PF00366 Ribosomal protein S17 PDPE_RS04655 PF00831 Ribosomal L29 protein PDPE_RS04660 PF00252 Ribosomal protein L16p/L10e PDPE_RS04665 PF07650 KH domain PDPE_RS04665 PF00189 Ribosomal protein S3, C-terminal domain PDPE_RS04670 PF00237 Ribosomal protein L22p/L17e PDPE_RS04675 PF00203 Ribosomal protein S19 PDPE_RS04680 PF00181 Ribosomal Proteins L2, RNA binding domain PDPE_RS04680 PF03947 Ribosomal Proteins L2, C-terminal domain PDPE_RS04685 PF00276 Ribosomal protein L23 PDPE_RS04690 PF00573 Ribosomal protein L4/L1 family PDPE_RS04695 PF00297 Ribosomal protein L3 PDPE_RS04700 PF00338 Ribosomal protein S10p/S20e PDPE_RS04705 PF00009 Elongation factor Tu GTP binding domain PDPE_RS04705 PF03144 Elongation factor Tu domain 2 PDPE_RS04705 PF03143 Elongation factor Tu C-terminal domain PDPE_RS04710 PF00679 Elongation factor G C-terminus PDPE_RS04710 PF14492 Elongation Factor G, domain II PDPE_RS04710 PF03144 Elongation factor Tu domain 2 PDPE_RS04710 PF03764 Elongation factor G, domain IV PDPE_RS04710 PF00009 Elongation factor Tu GTP binding domain PDPE_RS04715 PF00177 Ribosomal protein S7p/S5e PDPE_RS04720 PF00164 Ribosomal protein S12/S23 PDPE_RS04725 PF04077 DsrH like protein PDPE_RS04730 PF02635 DsrE/DsrF-like family PDPE_RS04735 PF02635 DsrE/DsrF-like family PDPE_RS04740 PF13309 HTH domain PDPE_RS04740 PF08348 YheO-like PAS domain PDPE_RS04745 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PDPE_RS04745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PDPE_RS04755 PF04102 SlyX PDPE_RS04760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PDPE_RS04770 PF00999 Sodium/hydrogen exchanger family PDPE_RS04770 PF02254 TrkA-N domain PDPE_RS04775 PF02525 Flavodoxin-like fold PDPE_RS04780 PF12848 ABC transporter PDPE_RS04780 PF00005 ABC transporter PDPE_RS04790 PF06794 Uncharacterised protein family (UPF0270) PDPE_RS04795 PF00485 Phosphoribulokinase / Uridine kinase family PDPE_RS04800 PF02566 OsmC-like protein PDPE_RS04805 PF13545 Crp-like helix-turn-helix domain PDPE_RS04805 PF00027 Cyclic nucleotide-binding domain PDPE_RS04815 PF04986 Putative transposase PDPE_RS04815 PF14319 Transposase zinc-binding domain PDPE_RS04825 PF03466 LysR substrate binding domain PDPE_RS04825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS04830 PF00905 Penicillin binding protein transpeptidase domain PDPE_RS04830 PF17092 Penicillin-binding protein OB-like domain PDPE_RS04830 PF00912 Transglycosylase PDPE_RS04835 PF11104 Type IV pilus assembly protein PilM; PDPE_RS04855 PF07660 Secretin and TonB N terminus short domain PDPE_RS04855 PF03958 Bacterial type II/III secretion system short domain PDPE_RS04855 PF00263 Bacterial type II and III secretion system protein PDPE_RS04855 PF11741 AMIN domain PDPE_RS04860 PF01202 Shikimate kinase PDPE_RS04865 PF01761 3-dehydroquinate synthase PDPE_RS04870 PF05036 Sporulation related domain PDPE_RS04875 PF02086 D12 class N6 adenine-specific DNA methyltransferase PDPE_RS04885 PF00834 Ribulose-phosphate 3 epimerase family PDPE_RS04890 PF13419 Haloacid dehalogenase-like hydrolase PDPE_RS04895 PF00579 tRNA synthetases class I (W and Y) PDPE_RS04910 PF00117 Glutamine amidotransferase class-I PDPE_RS04915 PF00202 Aminotransferase class-III PDPE_RS04920 PF04958 Arginine N-succinyltransferase beta subunit PDPE_RS04925 PF00171 Aldehyde dehydrogenase family PDPE_RS04940 PF14319 Transposase zinc-binding domain PDPE_RS04940 PF04986 Putative transposase PDPE_RS04950 PF00583 Acetyltransferase (GNAT) family PDPE_RS04950 PF00206 Lyase PDPE_RS04950 PF14698 Argininosuccinate lyase C-terminal PDPE_RS04955 PF00764 Arginosuccinate synthase PDPE_RS04960 PF00696 Amino acid kinase family PDPE_RS04965 PF01118 Semialdehyde dehydrogenase, NAD binding domain PDPE_RS04965 PF02774 Semialdehyde dehydrogenase, dimerisation domain PDPE_RS04970 PF00311 Phosphoenolpyruvate carboxylase PDPE_RS04975 PF03551 Transcriptional regulator PadR-like family PDPE_RS04975 PF10400 Virulence activator alpha C-term PDPE_RS04985 PF01340 Met Apo-repressor, MetJ PDPE_RS05005 PF12833 Helix-turn-helix domain PDPE_RS05005 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PDPE_RS05025 PF01197 Ribosomal protein L31 PDPE_RS05030 PF00270 DEAD/DEAH box helicase PDPE_RS05030 PF00271 Helicase conserved C-terminal domain PDPE_RS05030 PF17764 3′ DNA-binding domain (3′BD) PDPE_RS05030 PF18074 Primosomal protein N C-terminal domain PDPE_RS05030 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PDPE_RS05035 PF00356 Bacterial regulatory proteins, lacI family PDPE_RS05040 PF05036 Sporulation related domain PDPE_RS05045 PF00227 Proteasome subunit PDPE_RS05050 PF10431 C-terminal, D2-small domain, of ClpB protein PDPE_RS05050 PF07724 AAA domain (Cdc48 subfamily) PDPE_RS05050 PF00004 ATPase family associated with various cellular activities (AAA) PDPE_RS05055 PF01040 UbiA prenyltransferase family PDPE_RS05060 PF03737 Aldolase/RraA PDPE_RS05065 PF06005 Cell division protein ZapB PDPE_RS05070 PF00230 Major intrinsic protein PDPE_RS05075 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PDPE_RS05075 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PDPE_RS05080 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PDPE_RS05090 PF00175 Oxidoreductase NAD-binding domain PDPE_RS05090 PF00970 Oxidoreductase FAD-binding domain PDPE_RS05100 PF00121 Triosephosphate isomerase PDPE_RS05105 PF00365 Phosphofructokinase PDPE_RS05115 PF00072 Response regulator receiver domain PDPE_RS05115 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS05125 PF00588 SpoU rRNA Methylase family PDPE_RS05130 PF06426 Serine acetyltransferase, N-terminal PDPE_RS05130 PF00132 Bacterial transferase hexapeptide (six repeats) PDPE_RS05135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDPE_RS05135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PDPE_RS05140 PF02556 Preprotein translocase subunit SecB PDPE_RS05145 PF00581 Rhodanese-like domain PDPE_RS05150 PF01676 Metalloenzyme superfamily PDPE_RS05150 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PDPE_RS05155 PF01551 Peptidase family M23 PDPE_RS05160 PF08360 QacR-like protein, C-terminal region PDPE_RS05160 PF00440 Bacterial regulatory proteins, tetR family PDPE_RS05165 PF03279 Bacterial lipid A biosynthesis acyltransferase PDPE_RS05205 PF00535 Glycosyl transferase family 2 PDPE_RS05220 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PDPE_RS05230 PF01075 Glycosyltransferase family 9 (heptosyltransferase) PDPE_RS05235 PF01467 Cytidylyltransferase-like PDPE_RS05240 PF01370 NAD dependent epimerase/dehydratase family PDPE_RS05245 PF06827 Zinc finger found in FPG and IleRS PDPE_RS05245 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PDPE_RS05245 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PDPE_RS05255 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS05260 PF00471 Ribosomal protein L33 PDPE_RS05265 PF00830 Ribosomal L28 family PDPE_RS05270 PF04002 RadC-like JAB domain PDPE_RS05275 PF02441 Flavoprotein PDPE_RS05275 PF04127 DNA / pantothenate metabolism flavoprotein PDPE_RS05280 PF00692 dUTPase PDPE_RS05285 PF00440 Bacterial regulatory proteins, tetR family PDPE_RS05290 PF00156 Phosphoribosyl transferase domain PDPE_RS05295 PF01138 3' exoribonuclease family, domain 1 PDPE_RS05295 PF03725 3' exoribonuclease family, domain 2 PDPE_RS05300 PF08340 Domain of unknown function (DUF1732) PDPE_RS05300 PF03755 YicC-like family, N-terminal region PDPE_RS05320 PF08448 PAS fold PDPE_RS05320 PF00072 Response regulator receiver domain PDPE_RS05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS05320 PF13426 PAS domain PDPE_RS05320 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS05335 PF00625 Guanylate kinase PDPE_RS05340 PF01192 RNA polymerase Rpb6 PDPE_RS05345 PF02824 TGS domain PDPE_RS05345 PF13291 ACT domain PDPE_RS05345 PF04607 Region found in RelA / SpoT proteins PDPE_RS05350 PF12105 SpoU, rRNA methylase, C-terminal PDPE_RS05350 PF00588 SpoU rRNA Methylase family PDPE_RS05355 PF00271 Helicase conserved C-terminal domain PDPE_RS05355 PF00270 DEAD/DEAH box helicase PDPE_RS05355 PF17191 RecG wedge domain PDPE_RS05360 PF00860 Permease family PDPE_RS05365 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS05365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS05365 PF00672 HAMP domain PDPE_RS05370 PF00072 Response regulator receiver domain PDPE_RS05370 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS05380 PF01272 Transcription elongation factor, GreA/GreB, C-term PDPE_RS05380 PF03449 Transcription elongation factor, N-terminal PDPE_RS05385 PF09371 Tex-like protein N-terminal domain PDPE_RS05385 PF17674 HHH domain PDPE_RS05385 PF00575 S1 RNA binding domain PDPE_RS05385 PF16921 Tex protein YqgF-like domain PDPE_RS05395 PF00561 alpha/beta hydrolase fold PDPE_RS05400 PF00156 Phosphoribosyl transferase domain PDPE_RS05405 PF01521 Iron-sulphur cluster biosynthesis PDPE_RS05405 PF01106 NifU-like domain PDPE_RS05410 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS05420 PF01554 MatE PDPE_RS05450 PF00510 Cytochrome c oxidase subunit III PDPE_RS05455 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 PDPE_RS05460 PF00115 Cytochrome C and Quinol oxidase polypeptide I PDPE_RS05475 PF00717 Peptidase S24-like PDPE_RS05475 PF01726 LexA DNA binding domain PDPE_RS05480 PF01553 Acyltransferase PDPE_RS05485 PF01040 UbiA prenyltransferase family PDPE_RS05490 PF04345 Chorismate lyase PDPE_RS05495 PF03748 Flagellar basal body-associated protein FliL PDPE_RS05500 PF01266 FAD dependent oxidoreductase PDPE_RS05500 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PDPE_RS05505 PF08220 DeoR-like helix-turn-helix domain PDPE_RS05505 PF00455 DeoR C terminal sensor domain PDPE_RS05510 PF07690 Major Facilitator Superfamily PDPE_RS05515 PF01694 Rhomboid family PDPE_RS05515 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease PDPE_RS05520 PF00581 Rhodanese-like domain PDPE_RS05525 PF04545 Sigma-70, region 4 PDPE_RS05525 PF00140 Sigma-70 factor, region 1.2 PDPE_RS05525 PF04542 Sigma-70 region 2 PDPE_RS05530 PF18075 FtsX extracellular domain PDPE_RS05535 PF00005 ABC transporter PDPE_RS05540 PF02881 SRP54-type protein, helical bundle domain PDPE_RS05540 PF00448 SRP54-type protein, GTPase domain PDPE_RS05540 PF00448 SRP54-type protein, GTPase domain PDPE_RS05540 PF02881 SRP54-type protein, helical bundle domain PDPE_RS05575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS05580 PF00106 short chain dehydrogenase PDPE_RS05600 PF00210 Ferritin-like domain PDPE_RS05605 PF01810 LysE type translocator PDPE_RS05610 PF12146 Serine aminopeptidase, S33 PDPE_RS05630 PF03942 DTW domain PDPE_RS05635 PF00171 Aldehyde dehydrogenase family PDPE_RS05650 PF13520 Amino acid permease PDPE_RS05670 PF01276 Orn/Lys/Arg decarboxylase, major domain PDPE_RS05670 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PDPE_RS05670 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain PDPE_RS05680 PF00490 Delta-aminolevulinic acid dehydratase PDPE_RS05685 PF01026 TatD related DNase PDPE_RS05690 PF00902 Sec-independent protein translocase protein (TatC) PDPE_RS05695 PF02416 mttA/Hcf106 family PDPE_RS05700 PF02416 mttA/Hcf106 family PDPE_RS05705 PF03109 ABC1 family PDPE_RS05710 PF02036 SCP-2 sterol transfer family PDPE_RS05715 PF01209 ubiE/COQ5 methyltransferase family PDPE_RS05720 PF02646 RmuC family PDPE_RS05730 PF07690 Major Facilitator Superfamily PDPE_RS05735 PF05195 Aminopeptidase P, N-terminal domain PDPE_RS05735 PF00557 Metallopeptidase family M24 PDPE_RS05740 PF04055 Radical SAM superfamily PDPE_RS05740 PF06968 Biotin and Thiamin Synthesis associated domain PDPE_RS05745 PF05690 Thiazole biosynthesis protein ThiG PDPE_RS05755 PF00899 ThiF family PDPE_RS05760 PF02581 Thiamine monophosphate synthase PDPE_RS05770 PF00582 Universal stress protein family PDPE_RS05775 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PDPE_RS05805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III PDPE_RS05810 PF13361 UvrD-like helicase C-terminal domain PDPE_RS05810 PF00580 UvrD/REP helicase N-terminal domain PDPE_RS05815 PF00440 Bacterial regulatory proteins, tetR family PDPE_RS05820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PDPE_RS05825 PF00873 AcrB/AcrD/AcrF family PDPE_RS05830 PF04380 Membrane fusogenic activity PDPE_RS05835 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PDPE_RS05835 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PDPE_RS05840 PF03466 LysR substrate binding domain PDPE_RS05840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS05850 PF04986 Putative transposase PDPE_RS05850 PF14319 Transposase zinc-binding domain PDPE_RS05925 PF12724 Flavodoxin domain PDPE_RS05930 PF02386 Cation transport protein PDPE_RS05935 PF01205 Uncharacterized protein family UPF0029 PDPE_RS05935 PF09186 Domain of unknown function (DUF1949) PDPE_RS05940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PDPE_RS05940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDPE_RS05940 PF00378 Enoyl-CoA hydratase/isomerase PDPE_RS05945 PF00108 Thiolase, N-terminal domain PDPE_RS05945 PF02803 Thiolase, C-terminal domain PDPE_RS05950 PF08240 Alcohol dehydrogenase GroES-like domain PDPE_RS05950 PF00107 Zinc-binding dehydrogenase PDPE_RS05965 PF01206 Sulfurtransferase TusA PDPE_RS05970 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS05980 PF01169 Uncharacterized protein family UPF0016 PDPE_RS05985 PF13488 Glycine zipper PDPE_RS05985 PF00691 OmpA family PDPE_RS05990 PF02091 Glycyl-tRNA synthetase alpha subunit PDPE_RS05995 PF02092 Glycyl-tRNA synthetase beta subunit PDPE_RS05995 PF05746 DALR anticodon binding domain PDPE_RS06000 PF00155 Aminotransferase class I and II PDPE_RS06005 PF01751 Toprim domain PDPE_RS06005 PF18053 DNA gyrase B subunit insert domain PDPE_RS06005 PF00204 DNA gyrase B PDPE_RS06005 PF00986 DNA gyrase B subunit, carboxyl terminus PDPE_RS06005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS06010 PF02463 RecF/RecN/SMC N terminal domain PDPE_RS06015 PF00712 DNA polymerase III beta subunit, N-terminal domain PDPE_RS06015 PF02768 DNA polymerase III beta subunit, C-terminal domain PDPE_RS06015 PF02767 DNA polymerase III beta subunit, central domain PDPE_RS06020 PF00308 Bacterial dnaA protein PDPE_RS06020 PF08299 Bacterial dnaA protein helix-turn-helix PDPE_RS06020 PF11638 DnaA N-terminal domain PDPE_RS06025 PF00497 Bacterial extracellular solute-binding proteins, family 3 PDPE_RS06050 PF00468 Ribosomal protein L34 PDPE_RS06055 PF00825 Ribonuclease P PDPE_RS06060 PF01809 Putative membrane protein insertion efficiency factor PDPE_RS06065 PF02096 60Kd inner membrane protein PDPE_RS06065 PF14849 YidC periplasmic domain PDPE_RS06080 PF14319 Transposase zinc-binding domain PDPE_RS06080 PF04986 Putative transposase PDPE_RS06090 PF14319 Transposase zinc-binding domain PDPE_RS06090 PF04986 Putative transposase PDPE_RS06095 PF12631 MnmE helical domain PDPE_RS06095 PF01926 50S ribosome-binding GTPase PDPE_RS06095 PF10396 GTP-binding protein TrmE N-terminus PDPE_RS06100 PF00258 Flavodoxin PDPE_RS06105 PF01134 Glucose inhibited division protein A PDPE_RS06105 PF13932 GidA associated domain PDPE_RS06110 PF02527 rRNA small subunit methyltransferase G PDPE_RS06115 PF13614 AAA domain PDPE_RS06120 PF17762 HTH domain found in ParB protein PDPE_RS06120 PF02195 ParB-like nuclease domain PDPE_RS06125 PF03899 ATP synthase I chain PDPE_RS06130 PF00119 ATP synthase A chain PDPE_RS06135 PF00137 ATP synthase subunit C PDPE_RS06140 PF00430 ATP synthase B/B' CF(0) PDPE_RS06145 PF00213 ATP synthase delta (OSCP) subunit PDPE_RS06150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PDPE_RS06150 PF02874 ATP synthase alpha/beta family, beta-barrel domain PDPE_RS06150 PF00306 ATP synthase alpha/beta chain, C terminal domain PDPE_RS06155 PF00231 ATP synthase PDPE_RS06160 PF02874 ATP synthase alpha/beta family, beta-barrel domain PDPE_RS06160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PDPE_RS06165 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PDPE_RS06165 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PDPE_RS06170 PF00132 Bacterial transferase hexapeptide (six repeats) PDPE_RS06170 PF12804 MobA-like NTP transferase domain PDPE_RS06175 PF08220 DeoR-like helix-turn-helix domain PDPE_RS06175 PF00455 DeoR C terminal sensor domain PDPE_RS06180 PF01380 SIS domain PDPE_RS06190 PF14319 Transposase zinc-binding domain PDPE_RS06190 PF04986 Putative transposase PDPE_RS06210 PF00291 Pyridoxal-phosphate dependent enzyme PDPE_RS06210 PF00585 C-terminal regulatory domain of Threonine dehydratase PDPE_RS06215 PF00920 Dehydratase family PDPE_RS06220 PF01063 Amino-transferase class IV PDPE_RS06230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PDPE_RS06230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PDPE_RS06230 PF00205 Thiamine pyrophosphate enzyme, central domain PDPE_RS06240 PF14319 Transposase zinc-binding domain PDPE_RS06240 PF04986 Putative transposase PDPE_RS06245 PF04986 Putative transposase PDPE_RS06245 PF14319 Transposase zinc-binding domain PDPE_RS06260 PF14319 Transposase zinc-binding domain PDPE_RS06260 PF04986 Putative transposase PDPE_RS06280 PF04986 Putative transposase PDPE_RS06280 PF14319 Transposase zinc-binding domain PDPE_RS06295 PF14319 Transposase zinc-binding domain PDPE_RS06295 PF04986 Putative transposase PDPE_RS06315 PF01527 Transposase PDPE_RS06320 PF13333 Integrase core domain PDPE_RS06320 PF00665 Integrase core domain PDPE_RS06320 PF13276 HTH-like domain PDPE_RS06335 PF01323 DSBA-like thioredoxin domain PDPE_RS06340 PF01636 Phosphotransferase enzyme family PDPE_RS06345 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase PDPE_RS06345 PF12801 4Fe-4S binding domain PDPE_RS06345 PF13746 4Fe-4S dicluster domain PDPE_RS06350 PF06288 Protein of unknown function (DUF1040) PDPE_RS06360 PF00392 Bacterial regulatory proteins, gntR family PDPE_RS06360 PF07729 FCD domain PDPE_RS06365 PF03006 Haemolysin-III related PDPE_RS06370 PF02666 Phosphatidylserine decarboxylase PDPE_RS06380 PF01527 Transposase PDPE_RS06385 PF13276 HTH-like domain PDPE_RS06385 PF13333 Integrase core domain PDPE_RS06385 PF00665 Integrase core domain PDPE_RS06400 PF02386 Cation transport protein PDPE_RS06405 PF02080 TrkA-C domain PDPE_RS06405 PF02254 TrkA-N domain PDPE_RS06410 PF14319 Transposase zinc-binding domain PDPE_RS06410 PF04986 Putative transposase PDPE_RS06420 PF01029 NusB family PDPE_RS06420 PF01189 16S rRNA methyltransferase RsmB/F PDPE_RS06425 PF00551 Formyl transferase PDPE_RS06425 PF02911 Formyl transferase, C-terminal domain PDPE_RS06430 PF01327 Polypeptide deformylase PDPE_RS06440 PF17782 DprA winged helix domain PDPE_RS06440 PF02481 DNA recombination-mediator protein A PDPE_RS06445 PF04361 Protein of unknown function (DUF494) PDPE_RS06450 PF01396 Topoisomerase DNA binding C4 zinc finger PDPE_RS06455 PF02222 ATP-grasp domain PDPE_RS06455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PDPE_RS06460 PF00731 AIR carboxylase PDPE_RS06465 PF01300 Telomere recombination PDPE_RS06470 PF01218 Coproporphyrinogen III oxidase PDPE_RS06475 PF08501 Shikimate dehydrogenase substrate binding domain PDPE_RS06475 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PDPE_RS06475 PF01488 Shikimate / quinate 5-dehydrogenase PDPE_RS06485 PF00132 Bacterial transferase hexapeptide (six repeats) PDPE_RS06540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PDPE_RS06540 PF00005 ABC transporter PDPE_RS06545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PDPE_RS06550 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS06555 PF12911 N-terminal TM domain of oligopeptide transport permease C PDPE_RS06555 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS06565 PF07670 Nucleoside recognition PDPE_RS06630 PF01527 Transposase PDPE_RS06635 PF13333 Integrase core domain PDPE_RS06635 PF00665 Integrase core domain PDPE_RS06635 PF13276 HTH-like domain PDPE_RS06640 PF00665 Integrase core domain PDPE_RS06640 PF13276 HTH-like domain PDPE_RS06640 PF13333 Integrase core domain PDPE_RS06655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PDPE_RS06655 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS06660 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PDPE_RS06665 PF01432 Peptidase family M3 PDPE_RS06670 PF13673 Acetyltransferase (GNAT) domain PDPE_RS06685 PF00270 DEAD/DEAH box helicase PDPE_RS06685 PF00271 Helicase conserved C-terminal domain PDPE_RS06690 PF00085 Thioredoxin PDPE_RS06695 PF07498 Rho termination factor, N-terminal domain PDPE_RS06695 PF07497 Rho termination factor, RNA-binding domain PDPE_RS06695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PDPE_RS06700 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PDPE_RS06705 PF00175 Oxidoreductase NAD-binding domain PDPE_RS06705 PF00970 Oxidoreductase FAD-binding domain PDPE_RS06705 PF00111 2Fe-2S iron-sulfur cluster binding domain PDPE_RS06710 PF00175 Oxidoreductase NAD-binding domain PDPE_RS06720 PF00582 Universal stress protein family PDPE_RS06725 PF00210 Ferritin-like domain PDPE_RS06730 PF10625 Universal stress protein B (UspB) PDPE_RS06740 PF08721 TnsA endonuclease C terminal PDPE_RS06740 PF08722 TnsA endonuclease N terminal PDPE_RS06765 PF01527 Transposase PDPE_RS06770 PF00665 Integrase core domain PDPE_RS06770 PF13333 Integrase core domain PDPE_RS06770 PF13276 HTH-like domain PDPE_RS06825 PF00313 'Cold-shock' DNA-binding domain PDPE_RS06840 PF07963 Prokaryotic N-terminal methylation motif PDPE_RS06845 PF01037 Lrp/AsnC ligand binding domain PDPE_RS06855 PF04445 Putative SAM-dependent methyltransferase PDPE_RS06865 PF07219 HemY protein N-terminus PDPE_RS06865 PF07719 Tetratricopeptide repeat PDPE_RS06870 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase PDPE_RS06875 PF02602 Uroporphyrinogen-III synthase HemD PDPE_RS06880 PF03900 Porphobilinogen deaminase, C-terminal domain PDPE_RS06880 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PDPE_RS06885 PF01295 Adenylate cyclase, class-I PDPE_RS06885 PF12633 Adenylate cyclase NT domain PDPE_RS06890 PF01491 Frataxin-like domain PDPE_RS06900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PDPE_RS06900 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PDPE_RS06905 PF01678 Diaminopimelate epimerase PDPE_RS06915 PF02899 Phage integrase, N-terminal SAM-like domain PDPE_RS06915 PF00589 Phage integrase family PDPE_RS06920 PF13419 Haloacid dehalogenase-like hydrolase PDPE_RS06925 PF00580 UvrD/REP helicase N-terminal domain PDPE_RS06925 PF13361 UvrD-like helicase C-terminal domain PDPE_RS06945 PF02592 Putative vitamin uptake transporter PDPE_RS06950 PF01367 5'-3' exonuclease, C-terminal SAM fold PDPE_RS06950 PF01612 3'-5' exonuclease PDPE_RS06950 PF00476 DNA polymerase family A PDPE_RS06950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PDPE_RS06955 PF04986 Putative transposase PDPE_RS06955 PF14319 Transposase zinc-binding domain PDPE_RS06965 PF01926 50S ribosome-binding GTPase PDPE_RS06970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III PDPE_RS06975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS06985 PF04220 Der GTPase activator (YihI) PDPE_RS06990 PF10675 Protein of unknown function (DUF2489) PDPE_RS06995 PF04055 Radical SAM superfamily PDPE_RS06995 PF06969 HemN C-terminal domain PDPE_RS07000 PF02811 PHP domain PDPE_RS07000 PF14579 Helix-hairpin-helix motif PDPE_RS07000 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PDPE_RS07000 PF07733 Bacterial DNA polymerase III alpha NTPase domain PDPE_RS07000 PF00929 Exonuclease PDPE_RS07005 PF00571 CBS domain PDPE_RS07010 PF00962 Adenosine/AMP deaminase PDPE_RS07015 PF02954 Bacterial regulatory protein, Fis family PDPE_RS07015 PF00072 Response regulator receiver domain PDPE_RS07015 PF00158 Sigma-54 interaction domain PDPE_RS07030 PF00120 Glutamine synthetase, catalytic domain PDPE_RS07030 PF03951 Glutamine synthetase, beta-Grasp domain PDPE_RS07035 PF00009 Elongation factor Tu GTP binding domain PDPE_RS07035 PF03144 Elongation factor Tu domain 2 PDPE_RS07035 PF00679 Elongation factor G C-terminus PDPE_RS07050 PF03631 Virulence factor BrkB PDPE_RS07055 PF02580 D-Tyr-tRNA(Tyr) deacylase PDPE_RS07060 PF00583 Acetyltransferase (GNAT) family PDPE_RS07060 PF09500 Putative thioesterase (yiiD_Cterm) PDPE_RS07070 PF04986 Putative transposase PDPE_RS07070 PF14319 Transposase zinc-binding domain PDPE_RS07085 PF01293 Phosphoenolpyruvate carboxykinase PDPE_RS07090 PF01430 Hsp33 protein PDPE_RS07095 PF01479 S4 domain PDPE_RS07100 PF11356 Type II secretion system protein C PDPE_RS07105 PF03958 Bacterial type II/III secretion system short domain PDPE_RS07105 PF00263 Bacterial type II and III secretion system protein PDPE_RS07110 PF00437 Type II/IV secretion system protein PDPE_RS07115 PF00482 Type II secretion system (T2SS), protein F PDPE_RS07120 PF08334 Type II secretion system (T2SS), protein G PDPE_RS07120 PF07963 Prokaryotic N-terminal methylation motif PDPE_RS07125 PF12019 Type II transport protein GspH PDPE_RS07130 PF02501 Type II secretion system (T2SS), protein I PDPE_RS07130 PF07963 Prokaryotic N-terminal methylation motif PDPE_RS07135 PF07963 Prokaryotic N-terminal methylation motif PDPE_RS07135 PF11612 Type II secretion system (T2SS), protein J PDPE_RS07140 PF03934 Type II secretion system (T2SS), protein K PDPE_RS07145 PF05134 Type II secretion system (T2SS), protein L PDPE_RS07145 PF12693 GspL periplasmic domain PDPE_RS07150 PF04612 Type II secretion system (T2SS), protein M PDPE_RS07160 PF00293 NUDIX domain PDPE_RS07165 PF00459 Inositol monophosphatase family PDPE_RS07170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PDPE_RS07170 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS07175 PF00440 Bacterial regulatory proteins, tetR family PDPE_RS07185 PF05958 tRNA (Uracil-5-)-methyltransferase PDPE_RS07190 PF00593 TonB dependent receptor PDPE_RS07190 PF07715 TonB-dependent Receptor Plug Domain PDPE_RS07200 PF01177 Asp/Glu/Hydantoin racemase PDPE_RS07245 PF13091 PLD-like domain PDPE_RS07255 PF01565 FAD binding domain PDPE_RS07255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PDPE_RS07260 PF02237 Biotin protein ligase C terminal domain PDPE_RS07260 PF08279 HTH domain PDPE_RS07260 PF03099 Biotin/lipoate A/B protein ligase family PDPE_RS07265 PF03309 Type III pantothenate kinase PDPE_RS07290 PF00009 Elongation factor Tu GTP binding domain PDPE_RS07290 PF03144 Elongation factor Tu domain 2 PDPE_RS07290 PF03143 Elongation factor Tu C-terminal domain PDPE_RS07295 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PDPE_RS07300 PF02357 Transcription termination factor nusG PDPE_RS07300 PF00467 KOW motif PDPE_RS07305 PF00298 Ribosomal protein L11, RNA binding domain PDPE_RS07305 PF03946 Ribosomal protein L11, N-terminal domain PDPE_RS07310 PF00687 Ribosomal protein L1p/L10e family PDPE_RS07315 PF00466 Ribosomal protein L10 PDPE_RS07320 PF16320 Ribosomal protein L7/L12 dimerisation domain PDPE_RS07320 PF00542 Ribosomal protein L7/L12 C-terminal domain PDPE_RS07325 PF00562 RNA polymerase Rpb2, domain 6 PDPE_RS07325 PF04563 RNA polymerase beta subunit PDPE_RS07325 PF04561 RNA polymerase Rpb2, domain 2 PDPE_RS07325 PF10385 RNA polymerase beta subunit external 1 domain PDPE_RS07325 PF04560 RNA polymerase Rpb2, domain 7 PDPE_RS07325 PF04565 RNA polymerase Rpb2, domain 3 PDPE_RS07330 PF04998 RNA polymerase Rpb1, domain 5 PDPE_RS07330 PF04983 RNA polymerase Rpb1, domain 3 PDPE_RS07330 PF04997 RNA polymerase Rpb1, domain 1 PDPE_RS07330 PF00623 RNA polymerase Rpb1, domain 2 PDPE_RS07330 PF05000 RNA polymerase Rpb1, domain 4 PDPE_RS07335 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ PDPE_RS07340 PF00293 NUDIX domain PDPE_RS07340 PF09297 NADH pyrophosphatase zinc ribbon domain PDPE_RS07345 PF01208 Uroporphyrinogen decarboxylase (URO-D) PDPE_RS07350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDPE_RS07355 PF04222 Protein of unknown function (DUF416) PDPE_RS07360 PF04986 Putative transposase PDPE_RS07360 PF14319 Transposase zinc-binding domain PDPE_RS07375 PF00571 CBS domain PDPE_RS07375 PF01595 Cyclin M transmembrane N-terminal domain PDPE_RS07380 PF00216 Bacterial DNA-binding protein PDPE_RS07390 PF02844 Phosphoribosylglycinamide synthetase, N domain PDPE_RS07390 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PDPE_RS07390 PF02843 Phosphoribosylglycinamide synthetase, C domain PDPE_RS07395 PF01808 AICARFT/IMPCHase bienzyme PDPE_RS07395 PF02142 MGS-like domain PDPE_RS07400 PF13411 MerR HTH family regulatory protein PDPE_RS07405 PF14319 Transposase zinc-binding domain PDPE_RS07405 PF04986 Putative transposase PDPE_RS07430 PF01420 Type I restriction modification DNA specificity domain PDPE_RS07435 PF02384 N-6 DNA Methylase PDPE_RS07440 PF05638 Type VI secretion system effector, Hcp PDPE_RS07445 PF04717 Type VI secretion system, phage-baseplate injector PDPE_RS07445 PF16671 Actin cross-linking domain PDPE_RS07495 PF02954 Bacterial regulatory protein, Fis family PDPE_RS07500 PF01207 Dihydrouridine synthase (Dus) PDPE_RS07510 PF00474 Sodium:solute symporter family PDPE_RS07515 PF06196 Protein of unknown function (DUF997) PDPE_RS07520 PF14319 Transposase zinc-binding domain PDPE_RS07520 PF04986 Putative transposase PDPE_RS07530 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS07535 PF02785 Biotin carboxylase C-terminal domain PDPE_RS07535 PF00289 Biotin carboxylase, N-terminal domain PDPE_RS07535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PDPE_RS07540 PF00364 Biotin-requiring enzyme PDPE_RS07545 PF01220 Dehydroquinase class II PDPE_RS07550 PF13193 AMP-binding enzyme C-terminal domain PDPE_RS07550 PF16177 Acetyl-coenzyme A synthetase N-terminus PDPE_RS07550 PF00501 AMP-binding enzyme PDPE_RS07555 PF14319 Transposase zinc-binding domain PDPE_RS07555 PF04986 Putative transposase PDPE_RS07570 PF00154 recA bacterial DNA recombination protein PDPE_RS07575 PF12832 MFS_1 like family PDPE_RS07585 PF00474 Sodium:solute symporter family PDPE_RS07590 PF01914 MarC family integral membrane protein PDPE_RS07595 PF00072 Response regulator receiver domain PDPE_RS07595 PF00196 Bacterial regulatory proteins, luxR family PDPE_RS07600 PF03466 LysR substrate binding domain PDPE_RS07600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS07605 PF03605 Anaerobic c4-dicarboxylate membrane transporter PDPE_RS07610 PF00206 Lyase PDPE_RS07610 PF10415 Fumarase C C-terminus PDPE_RS07620 PF01554 MatE PDPE_RS07625 PF00166 Chaperonin 10 Kd subunit PDPE_RS07630 PF00118 TCP-1/cpn60 chaperonin family PDPE_RS07640 PF00075 RNase H PDPE_RS07645 PF02796 Helix-turn-helix domain of resolvase PDPE_RS07645 PF00239 Resolvase, N terminal domain PDPE_RS07660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS07665 PF08443 RimK-like ATP-grasp domain PDPE_RS07665 PF18030 RimK PreATP-grasp domain PDPE_RS07670 PF04055 Radical SAM superfamily PDPE_RS07675 PF08207 Elongation factor P (EF-P) KOW-like domain PDPE_RS07675 PF01132 Elongation factor P (EF-P) OB domain PDPE_RS07675 PF09285 Elongation factor P, C-terminal PDPE_RS07680 PF02313 Fumarate reductase subunit D PDPE_RS07685 PF02300 Fumarate reductase subunit C PDPE_RS07690 PF13085 2Fe-2S iron-sulfur cluster binding domain PDPE_RS07690 PF13183 4Fe-4S dicluster domain PDPE_RS07695 PF00890 FAD binding domain PDPE_RS07695 PF02910 Fumarate reductase flavoprotein C-term PDPE_RS07700 PF00152 tRNA synthetases class II (D, K and N) PDPE_RS07705 PF00194 Eukaryotic-type carbonic anhydrase PDPE_RS07715 PF00939 Sodium:sulfate symporter transmembrane region PDPE_RS07720 PF02666 Phosphatidylserine decarboxylase PDPE_RS07725 PF03193 RsgA GTPase PDPE_RS07730 PF00929 Exonuclease PDPE_RS07795 PF08331 Domain of unknown function (DUF1730) PDPE_RS07805 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PDPE_RS07810 PF01520 N-acetylmuramoyl-L-alanine amidase PDPE_RS07815 PF01119 DNA mismatch repair protein, C-terminal domain PDPE_RS07815 PF08676 MutL C terminal dimerisation domain PDPE_RS07825 PF17209 Hfq protein PDPE_RS07830 PF01926 50S ribosome-binding GTPase PDPE_RS07830 PF13167 GTP-binding GTPase N-terminal PDPE_RS07830 PF16360 GTP-binding GTPase Middle Region PDPE_RS07835 PF01145 SPFH domain / Band 7 family PDPE_RS07835 PF12221 Bacterial membrane protein N terminal PDPE_RS07840 PF01145 SPFH domain / Band 7 family PDPE_RS07845 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) PDPE_RS07850 PF00709 Adenylosuccinate synthetase PDPE_RS07855 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS07860 PF08238 Sel1 repeat PDPE_RS07865 PF00175 Oxidoreductase NAD-binding domain PDPE_RS07865 PF00042 Globin PDPE_RS07865 PF00970 Oxidoreductase FAD-binding domain PDPE_RS07870 PF02082 Transcriptional regulator PDPE_RS07875 PF00575 S1 RNA binding domain PDPE_RS07875 PF00773 RNB domain PDPE_RS07875 PF08461 Ribonuclease R winged-helix domain PDPE_RS07875 PF08206 Ribonuclease B OB domain PDPE_RS07875 PF17876 Cold shock domain PDPE_RS07880 PF08032 RNA 2'-O ribose methyltransferase substrate binding PDPE_RS07880 PF00588 SpoU rRNA Methylase family PDPE_RS07885 PF01250 Ribosomal protein S6 PDPE_RS07890 PF00436 Single-strand binding protein family PDPE_RS07895 PF01084 Ribosomal protein S18 PDPE_RS07900 PF01281 Ribosomal protein L9, N-terminal domain PDPE_RS07900 PF03948 Ribosomal protein L9, C-terminal domain PDPE_RS07910 PF03796 DnaB-like helicase C terminal domain PDPE_RS07910 PF00772 DnaB-like helicase N terminal domain PDPE_RS07915 PF01168 Alanine racemase, N-terminal domain PDPE_RS07915 PF00842 Alanine racemase, C-terminal domain PDPE_RS07930 PF01894 Uncharacterised protein family UPF0047 PDPE_RS07935 PF00342 Phosphoglucose isomerase PDPE_RS07940 PF00313 'Cold-shock' DNA-binding domain PDPE_RS07950 PF01475 Ferric uptake regulator family PDPE_RS07955 PF01207 Dihydrouridine synthase (Dus) PDPE_RS07960 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS07965 PF09583 Phage shock protein G (Phageshock_PspG) PDPE_RS07980 PF00667 FAD binding domain PDPE_RS07980 PF00258 Flavodoxin PDPE_RS07980 PF00175 Oxidoreductase NAD-binding domain PDPE_RS07985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PDPE_RS07985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PDPE_RS07990 PF01507 Phosphoadenosine phosphosulfate reductase family PDPE_RS08005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PDPE_RS08005 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PDPE_RS08010 PF04225 Opacity-associated protein A LysM-like domain PDPE_RS08010 PF08525 Opacity-associated protein A N-terminal motif PDPE_RS08020 PF14824 Sirohaem biosynthesis protein central PDPE_RS08020 PF10414 Sirohaem synthase dimerisation region PDPE_RS08020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PDPE_RS08025 PF01507 Phosphoadenosine phosphosulfate reductase family PDPE_RS08035 PF02080 TrkA-C domain PDPE_RS08035 PF03600 Citrate transporter PDPE_RS08045 PF00459 Inositol monophosphatase family PDPE_RS08140 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) PDPE_RS08145 PF06526 Protein of unknown function (DUF1107) PDPE_RS08150 PF07244 Surface antigen variable number repeat PDPE_RS08150 PF17243 POTRA domain TamA domain 1 PDPE_RS08150 PF01103 Surface antigen PDPE_RS08155 PF04357 TamB, inner membrane protein subunit of TAM complex PDPE_RS08160 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS08165 PF00581 Rhodanese-like domain PDPE_RS08170 PF00719 Inorganic pyrophosphatase PDPE_RS08175 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PDPE_RS08180 PF08245 Mur ligase middle domain PDPE_RS08180 PF02875 Mur ligase family, glutamate ligase domain PDPE_RS08180 PF01225 Mur ligase family, catalytic domain PDPE_RS08185 PF02441 Flavoprotein PDPE_RS08195 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS08210 PF02863 Arginine repressor, C-terminal domain PDPE_RS08210 PF01316 Arginine repressor, DNA binding domain PDPE_RS08215 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PDPE_RS08215 PF00056 lactate/malate dehydrogenase, NAD binding domain PDPE_RS08225 PF00348 Polyprenyl synthetase PDPE_RS08230 PF00829 Ribosomal prokaryotic L21 protein PDPE_RS08235 PF01016 Ribosomal L27 protein PDPE_RS08240 PF00892 EamA-like transporter family PDPE_RS08245 PF01926 50S ribosome-binding GTPase PDPE_RS08245 PF01018 GTP1/OBG PDPE_RS08250 PF06738 Putative threonine/serine exporter PDPE_RS08255 PF12821 Threonine/Serine exporter, ThrE PDPE_RS08260 PF00186 Dihydrofolate reductase PDPE_RS08265 PF00149 Calcineurin-like phosphoesterase PDPE_RS08270 PF00398 Ribosomal RNA adenine dimethylase PDPE_RS08275 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PDPE_RS08280 PF09312 SurA N-terminal domain PDPE_RS08285 PF03968 OstA-like protein PDPE_RS08285 PF04453 LPS transport system D PDPE_RS08290 PF05099 Tellurite resistance protein TerB PDPE_RS08290 PF00226 DnaJ domain PDPE_RS08295 PF00849 RNA pseudouridylate synthase PDPE_RS08300 PF14319 Transposase zinc-binding domain PDPE_RS08300 PF04986 Putative transposase PDPE_RS08310 PF18339 RapA N-terminal Tudor like domain 1 PDPE_RS08310 PF00176 SNF2 family N-terminal domain PDPE_RS08310 PF12137 RNA polymerase recycling family C-terminal PDPE_RS08310 PF00271 Helicase conserved C-terminal domain PDPE_RS08310 PF18337 RapA N-terminal Tudor like domain PDPE_RS08315 PF13638 PIN domain PDPE_RS08315 PF02562 PhoH-like protein PDPE_RS08320 PF00005 ABC transporter PDPE_RS08340 PF00694 Aconitase C-terminal domain PDPE_RS08345 PF00330 Aconitase family (aconitate hydratase) PDPE_RS08350 PF00180 Isocitrate/isopropylmalate dehydrogenase PDPE_RS08360 PF03466 LysR substrate binding domain PDPE_RS08360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS08365 PF00501 AMP-binding enzyme PDPE_RS08370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PDPE_RS08370 PF00205 Thiamine pyrophosphate enzyme, central domain PDPE_RS08370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PDPE_RS08375 PF10369 Small subunit of acetolactate synthase PDPE_RS08385 PF02887 Pyruvate kinase, alpha/beta domain PDPE_RS08385 PF00224 Pyruvate kinase, barrel domain PDPE_RS08405 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain PDPE_RS08405 PF13538 UvrD-like helicase C-terminal domain PDPE_RS08405 PF14490 Helix-hairpin-helix containing domain PDPE_RS08430 PF13333 Integrase core domain PDPE_RS08430 PF13276 HTH-like domain PDPE_RS08430 PF00665 Integrase core domain PDPE_RS08435 PF01527 Transposase PDPE_RS08480 PF04542 Sigma-70 region 2 PDPE_RS08480 PF04545 Sigma-70, region 4 PDPE_RS08480 PF00140 Sigma-70 factor, region 1.2 PDPE_RS08480 PF04539 Sigma-70 region 3 PDPE_RS08480 PF03979 Sigma-70 factor, region 1.1 PDPE_RS08480 PF04546 Sigma-70, non-essential region PDPE_RS08485 PF01807 CHC2 zinc finger PDPE_RS08485 PF10410 DnaB-helicase binding domain of primase PDPE_RS08485 PF08275 DNA primase catalytic core, N-terminal domain PDPE_RS08485 PF08278 DNA primase DnaG DnaB-binding PDPE_RS08490 PF09424 Yqey-like protein PDPE_RS08495 PF01165 Ribosomal protein S21 PDPE_RS08500 PF00814 Glycoprotease family PDPE_RS08505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS08515 PF02152 Dihydroneopterin aldolase PDPE_RS08520 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PDPE_RS08525 PF02673 Bacitracin resistance protein BacA PDPE_RS08530 PF12627 Probable RNA and SrmB- binding site of polymerase A PDPE_RS08530 PF01743 Poly A polymerase head domain PDPE_RS08530 PF01966 HD domain PDPE_RS08535 PF13401 AAA domain PDPE_RS08535 PF01471 Putative peptidoglycan binding domain PDPE_RS08545 PF08239 Bacterial SH3 domain PDPE_RS08550 PF01384 Phosphate transporter family PDPE_RS08555 PF01865 Protein of unknown function DUF47 PDPE_RS08560 PF01928 CYTH domain PDPE_RS08565 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS08575 PF08335 GlnD PII-uridylyltransferase PDPE_RS08575 PF03710 Glutamate-ammonia ligase adenylyltransferase PDPE_RS08580 PF00294 pfkB family carbohydrate kinase PDPE_RS08580 PF01467 Cytidylyltransferase-like PDPE_RS08585 PF02321 Outer membrane efflux protein PDPE_RS08590 PF00293 NUDIX domain PDPE_RS08595 PF06853 Protein of unknown function (DUF1249) PDPE_RS08600 PF00149 Calcineurin-like phosphoesterase PDPE_RS08605 PF05728 Uncharacterised protein family (UPF0227) PDPE_RS08610 PF00204 DNA gyrase B PDPE_RS08610 PF01751 Toprim domain PDPE_RS08610 PF00986 DNA gyrase B subunit, carboxyl terminus PDPE_RS08610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS08615 PF00521 DNA gyrase/topoisomerase IV, subunit A PDPE_RS08615 PF03989 DNA gyrase C-terminal domain, beta-propeller PDPE_RS08620 PF01553 Acyltransferase PDPE_RS08625 PF00293 NUDIX domain PDPE_RS08630 PF01042 Endoribonuclease L-PSP PDPE_RS08635 PF02863 Arginine repressor, C-terminal domain PDPE_RS08635 PF01316 Arginine repressor, DNA binding domain PDPE_RS08640 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain PDPE_RS08640 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain PDPE_RS08645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PDPE_RS08645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PDPE_RS08650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PDPE_RS08650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PDPE_RS08655 PF00696 Amino acid kinase family PDPE_RS08670 PF03606 C4-dicarboxylate anaerobic carrier PDPE_RS08675 PF06877 Regulator of ribonuclease activity B PDPE_RS08690 PF08264 Anticodon-binding domain of tRNA PDPE_RS08690 PF00133 tRNA synthetases class I (I, L, M and V) PDPE_RS08690 PF10458 Valyl tRNA synthetase tRNA binding arm PDPE_RS08695 PF04364 DNA polymerase III chi subunit, HolC PDPE_RS08700 PF02789 Cytosol aminopeptidase family, N-terminal domain PDPE_RS08700 PF00883 Cytosol aminopeptidase family, catalytic domain PDPE_RS08705 PF03739 Lipopolysaccharide export system permease LptF/LptG PDPE_RS08710 PF03739 Lipopolysaccharide export system permease LptF/LptG PDPE_RS08740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PDPE_RS08740 PF00005 ABC transporter PDPE_RS08745 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS08745 PF12911 N-terminal TM domain of oligopeptide transport permease C PDPE_RS08750 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS08755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PDPE_RS08765 PF05175 Methyltransferase small domain PDPE_RS08765 PF08468 Methyltransferase small domain N-terminal PDPE_RS08770 PF01594 AI-2E family transporter PDPE_RS08775 PF00202 Aminotransferase class-III PDPE_RS08780 PF00654 Voltage gated chloride channel PDPE_RS08785 PF01521 Iron-sulphur cluster biosynthesis PDPE_RS08790 PF01551 Peptidase family M23 PDPE_RS08790 PF01476 LysM domain PDPE_RS08790 PF08525 Opacity-associated protein A N-terminal motif PDPE_RS08795 PF00579 tRNA synthetases class I (W and Y) PDPE_RS08800 PF09335 SNARE associated Golgi protein PDPE_RS08805 PF03458 UPF0126 domain PDPE_RS08820 PF01048 Phosphorylase superfamily PDPE_RS08825 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PDPE_RS08825 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS08830 PF00310 Glutamine amidotransferases class-II PDPE_RS08830 PF01493 GXGXG motif PDPE_RS08830 PF01645 Conserved region in glutamate synthase PDPE_RS08830 PF04898 Glutamate synthase central domain PDPE_RS08835 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PDPE_RS08835 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS08840 PF04898 Glutamate synthase central domain PDPE_RS08840 PF00310 Glutamine amidotransferases class-II PDPE_RS08840 PF01493 GXGXG motif PDPE_RS08840 PF01645 Conserved region in glutamate synthase PDPE_RS08845 PF16199 Radical_SAM C-terminal domain PDPE_RS08845 PF04055 Radical SAM superfamily PDPE_RS08850 PF00360 Phytochrome region PDPE_RS08850 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS08850 PF00563 EAL domain PDPE_RS08850 PF01590 GAF domain PDPE_RS08855 PF01627 Hpt domain PDPE_RS08855 PF00072 Response regulator receiver domain PDPE_RS08855 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS08855 PF00989 PAS fold PDPE_RS08855 PF18415 Histidine kinase receptor ArcB trans-membrane domain PDPE_RS08855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS08870 PF00072 Response regulator receiver domain PDPE_RS08870 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS08875 PF03737 Aldolase/RraA PDPE_RS08885 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) PDPE_RS08890 PF00742 Homoserine dehydrogenase PDPE_RS08890 PF13840 ACT domain PDPE_RS08890 PF00696 Amino acid kinase family PDPE_RS08890 PF03447 Homoserine dehydrogenase, NAD binding domain PDPE_RS08890 PF01842 ACT domain PDPE_RS08900 PF00291 Pyridoxal-phosphate dependent enzyme PDPE_RS08900 PF14821 Threonine synthase N terminus PDPE_RS08940 PF04986 Putative transposase PDPE_RS08940 PF14319 Transposase zinc-binding domain PDPE_RS08990 PF14461 Prokaryotic E2 family B PDPE_RS08990 PF00899 ThiF family PDPE_RS09005 PF01527 Transposase PDPE_RS09010 PF13276 HTH-like domain PDPE_RS09010 PF13333 Integrase core domain PDPE_RS09010 PF00665 Integrase core domain PDPE_RS09045 PF01228 Glycine radical PDPE_RS09060 PF01261 Xylose isomerase-like TIM barrel PDPE_RS09065 PF03167 Uracil DNA glycosylase superfamily PDPE_RS09080 PF01235 Sodium:alanine symporter family PDPE_RS09085 PF03883 Peroxide stress protein YaaA PDPE_RS09090 PF00271 Helicase conserved C-terminal domain PDPE_RS09090 PF00270 DEAD/DEAH box helicase PDPE_RS09100 PF05525 Branched-chain amino acid transport protein PDPE_RS09105 PF00258 Flavodoxin PDPE_RS09110 PF00589 Phage integrase family PDPE_RS09110 PF02899 Phage integrase, N-terminal SAM-like domain PDPE_RS09115 PF13098 Thioredoxin-like domain PDPE_RS09115 PF10411 Disulfide bond isomerase protein N-terminus PDPE_RS09120 PF17768 RecJ OB domain PDPE_RS09120 PF02272 DHHA1 domain PDPE_RS09120 PF01368 DHH family PDPE_RS09130 PF00152 tRNA synthetases class II (D, K and N) PDPE_RS09135 PF00158 Sigma-54 interaction domain PDPE_RS09135 PF00072 Response regulator receiver domain PDPE_RS09135 PF02954 Bacterial regulatory protein, Fis family PDPE_RS09145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS09150 PF02976 DNA mismatch repair enzyme MutH PDPE_RS09155 PF00293 NUDIX domain PDPE_RS09160 PF01590 GAF domain PDPE_RS09160 PF05524 PEP-utilising enzyme, N-terminal PDPE_RS09160 PF00391 PEP-utilising enzyme, mobile domain PDPE_RS09160 PF02896 PEP-utilising enzyme, TIM barrel domain PDPE_RS09165 PF01925 Sulfite exporter TauE/SafE PDPE_RS09170 PF01790 Prolipoprotein diacylglyceryl transferase PDPE_RS09175 PF00303 Thymidylate synthase PDPE_RS09180 PF02690 Na+/Pi-cotransporter PDPE_RS09185 PF06965 Na+/H+ antiporter 1 PDPE_RS09195 PF03466 LysR substrate binding domain PDPE_RS09195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS09200 PF01022 Bacterial regulatory protein, arsR family PDPE_RS09205 PF01649 Ribosomal protein S20 PDPE_RS09210 PF03023 Lipid II flippase MurJ PDPE_RS09215 PF01687 Riboflavin kinase PDPE_RS09215 PF06574 FAD synthetase PDPE_RS09220 PF06827 Zinc finger found in FPG and IleRS PDPE_RS09220 PF08264 Anticodon-binding domain of tRNA PDPE_RS09220 PF00133 tRNA synthetases class I (I, L, M and V) PDPE_RS09225 PF01252 Signal peptidase (SPase) II PDPE_RS09230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PDPE_RS09235 PF02401 LytB protein PDPE_RS09245 PF00117 Glutamine amidotransferase class-I PDPE_RS09245 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PDPE_RS09250 PF02142 MGS-like domain PDPE_RS09250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PDPE_RS09250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PDPE_RS09265 PF03448 MgtE intracellular N domain PDPE_RS09265 PF01769 Divalent cation transporter PDPE_RS09265 PF00571 CBS domain PDPE_RS09270 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family PDPE_RS09275 PF13609 Gram-negative porin PDPE_RS09280 PF01272 Transcription elongation factor, GreA/GreB, C-term PDPE_RS09280 PF03449 Transcription elongation factor, N-terminal PDPE_RS09285 PF01985 CRS1 / YhbY (CRM) domain PDPE_RS09290 PF01728 FtsJ-like methyltransferase PDPE_RS09295 PF00004 ATPase family associated with various cellular activities (AAA) PDPE_RS09295 PF17862 AAA+ lid domain PDPE_RS09295 PF06480 FtsH Extracellular PDPE_RS09295 PF01434 Peptidase family M41 PDPE_RS09300 PF00809 Pterin binding enzyme PDPE_RS09305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PDPE_RS09305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PDPE_RS09305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PDPE_RS09305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PDPE_RS09310 PF03840 Preprotein translocase SecG subunit PDPE_RS09325 PF02576 RimP N-terminal domain PDPE_RS09325 PF17384 RimP C-terminal SH3 domain PDPE_RS09330 PF00575 S1 RNA binding domain PDPE_RS09330 PF08529 NusA N-terminal domain PDPE_RS09330 PF13184 NusA-like KH domain PDPE_RS09335 PF00009 Elongation factor Tu GTP binding domain PDPE_RS09335 PF11987 Translation-initiation factor 2 PDPE_RS09335 PF08364 Bacterial translation initiation factor IF-2 associated region PDPE_RS09335 PF04760 Translation initiation factor IF-2, N-terminal region PDPE_RS09340 PF02033 Ribosome-binding factor A PDPE_RS09345 PF01509 TruB family pseudouridylate synthase (N terminal domain) PDPE_RS09345 PF16198 tRNA pseudouridylate synthase B C-terminal domain PDPE_RS09345 PF09157 Pseudouridine synthase II TruB, C-terminal PDPE_RS09350 PF00312 Ribosomal protein S15 PDPE_RS09355 PF00575 S1 RNA binding domain PDPE_RS09355 PF03725 3' exoribonuclease family, domain 2 PDPE_RS09355 PF01138 3' exoribonuclease family, domain 1 PDPE_RS09355 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PDPE_RS09355 PF00013 KH domain PDPE_RS09360 PF13181 Tetratricopeptide repeat PDPE_RS09360 PF07719 Tetratricopeptide repeat PDPE_RS09365 PF01136 Peptidase family U32 PDPE_RS09370 PF01136 Peptidase family U32 PDPE_RS09375 PF00563 EAL domain PDPE_RS09375 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS09375 PF03707 Bacterial signalling protein N terminal repeat PDPE_RS09380 PF02036 SCP-2 sterol transfer family PDPE_RS09385 PF13508 Acetyltransferase (GNAT) domain PDPE_RS09390 PF00465 Iron-containing alcohol dehydrogenase PDPE_RS09400 PF00583 Acetyltransferase (GNAT) family PDPE_RS09405 PF03144 Elongation factor Tu domain 2 PDPE_RS09405 PF16658 Class II release factor RF3, C-terminal domain PDPE_RS09405 PF00009 Elongation factor Tu GTP binding domain PDPE_RS09410 PF00128 Alpha amylase, catalytic domain PDPE_RS09410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PDPE_RS09415 PF01026 TatD related DNase PDPE_RS09430 PF01791 DeoC/LacD family aldolase PDPE_RS09435 PF02885 Glycosyl transferase family, helical bundle domain PDPE_RS09435 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain PDPE_RS09435 PF00591 Glycosyl transferase family, a/b domain PDPE_RS09440 PF01676 Metalloenzyme superfamily PDPE_RS09455 PF18429 Domain of unknown function (DUF5609) PDPE_RS09465 PF18073 Rubredoxin metal binding domain PDPE_RS09470 PF01551 Peptidase family M23 PDPE_RS09470 PF04225 Opacity-associated protein A LysM-like domain PDPE_RS09475 PF00005 ABC transporter PDPE_RS09475 PF12848 ABC transporter PDPE_RS09485 PF01371 Trp repressor protein PDPE_RS09490 PF01931 Protein of unknown function DUF84 PDPE_RS09495 PF00691 OmpA family PDPE_RS09495 PF04972 BON domain PDPE_RS09500 PF11999 Protein of unknown function (DUF3494) PDPE_RS09500 PF02368 Bacterial Ig-like domain (group 2) PDPE_RS09510 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 PDPE_RS09510 PF00555 delta endotoxin PDPE_RS09510 PF03944 delta endotoxin PDPE_RS09510 PF03945 delta endotoxin, N-terminal domain PDPE_RS09535 PF04986 Putative transposase PDPE_RS09535 PF14319 Transposase zinc-binding domain PDPE_RS09550 PF00271 Helicase conserved C-terminal domain PDPE_RS09550 PF00270 DEAD/DEAH box helicase PDPE_RS09570 PF00665 Integrase core domain PDPE_RS09570 PF13333 Integrase core domain PDPE_RS09570 PF13276 HTH-like domain PDPE_RS09575 PF01527 Transposase PDPE_RS09580 PF00183 Hsp90 protein PDPE_RS09580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS09600 PF00145 C-5 cytosine-specific DNA methylase PDPE_RS09605 PF00589 Phage integrase family PDPE_RS09605 PF13356 Arm DNA-binding domain PDPE_RS09620 PF12008 Type I restriction and modification enzyme - subunit R C terminal PDPE_RS09620 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PDPE_RS09620 PF18766 SWI2/SNF2 ATPase PDPE_RS09630 PF12161 HsdM N-terminal domain PDPE_RS09630 PF02384 N-6 DNA Methylase PDPE_RS09660 PF00589 Phage integrase family PDPE_RS09660 PF13356 Arm DNA-binding domain PDPE_RS09670 PF01668 SmpB protein PDPE_RS09675 PF03364 Polyketide cyclase / dehydrase and lipid transport PDPE_RS09680 PF03658 RnfH family Ubiquitin PDPE_RS09685 PF04355 SmpA / OmlA family PDPE_RS09690 PF02463 RecF/RecN/SMC N terminal domain PDPE_RS09695 PF01513 ATP-NAD kinase PDPE_RS09700 PF01025 GrpE PDPE_RS09705 PF00012 Hsp70 protein PDPE_RS09710 PF00684 DnaJ central domain PDPE_RS09710 PF00226 DnaJ domain PDPE_RS09710 PF01556 DnaJ C terminal domain PDPE_RS09715 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor PDPE_RS09715 PF07963 Prokaryotic N-terminal methylation motif PDPE_RS09800 PF04198 Putative sugar-binding domain PDPE_RS09800 PF00325 Bacterial regulatory proteins, crp family PDPE_RS09810 PF03144 Elongation factor Tu domain 2 PDPE_RS09810 PF00009 Elongation factor Tu GTP binding domain PDPE_RS09810 PF09107 Elongation factor SelB, winged helix PDPE_RS09810 PF09106 Elongation factor SelB, winged helix PDPE_RS09815 PF03841 L-seryl-tRNA selenium transferase PDPE_RS09815 PF12390 Selenocysteine synthase N terminal PDPE_RS09820 PF04216 Protein involved in formate dehydrogenase formation PDPE_RS09825 PF01292 Prokaryotic cytochrome b561 PDPE_RS09830 PF09163 Formate dehydrogenase N, transmembrane PDPE_RS09830 PF13247 4Fe-4S dicluster domain PDPE_RS09835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PDPE_RS09835 PF00384 Molybdopterin oxidoreductase PDPE_RS09835 PF01568 Molydopterin dinucleotide binding domain PDPE_RS09840 PF00384 Molybdopterin oxidoreductase PDPE_RS09840 PF01568 Molydopterin dinucleotide binding domain PDPE_RS09840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PDPE_RS09845 PF02634 FdhD/NarQ family PDPE_RS09860 PF12838 4Fe-4S dicluster domain PDPE_RS09865 PF16325 Peptidase family U32 C-terminal domain PDPE_RS09865 PF01136 Peptidase family U32 PDPE_RS09870 PF01081 KDPG and KHG aldolase PDPE_RS09875 PF03352 Methyladenine glycosylase PDPE_RS09880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PDPE_RS09880 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PDPE_RS09910 PF04381 Putative exonuclease, RdgC PDPE_RS09915 PF12320 Type 5 capsule protein repressor C-terminal domain PDPE_RS09915 PF00149 Calcineurin-like phosphoesterase PDPE_RS09920 PF13476 AAA domain PDPE_RS09925 PF00072 Response regulator receiver domain PDPE_RS09925 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS09935 PF12849 PBP superfamily domain PDPE_RS09940 PF02541 Ppx/GppA phosphatase family PDPE_RS09945 PF13090 Polyphosphate kinase C-terminal domain 2 PDPE_RS09945 PF17941 Polyphosphate kinase C-terminal domain 1 PDPE_RS09945 PF13089 Polyphosphate kinase N-terminal domain PDPE_RS09945 PF02503 Polyphosphate kinase middle domain PDPE_RS09955 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS09960 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS09965 PF00005 ABC transporter PDPE_RS09970 PF01895 PhoU domain PDPE_RS09985 PF03932 CutC family PDPE_RS09990 PF00578 AhpC/TSA family PDPE_RS09990 PF10417 C-terminal domain of 1-Cys peroxiredoxin PDPE_RS09995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS09995 PF03466 LysR substrate binding domain PDPE_RS10000 PF01274 Malate synthase PDPE_RS10005 PF00463 Isocitrate lyase family PDPE_RS10010 PF10938 YfdX protein PDPE_RS10030 PF02547 Queuosine biosynthesis protein PDPE_RS10035 PF01702 Queuine tRNA-ribosyltransferase PDPE_RS10040 PF02699 Preprotein translocase subunit PDPE_RS10045 PF02355 Protein export membrane protein PDPE_RS10045 PF13721 SecD export protein N-terminal TM region PDPE_RS10045 PF07549 SecD/SecF GG Motif PDPE_RS10050 PF07549 SecD/SecF GG Motif PDPE_RS10050 PF02355 Protein export membrane protein PDPE_RS10065 PF00459 Inositol monophosphatase family PDPE_RS10070 PF00588 SpoU rRNA Methylase family PDPE_RS10075 PF02082 Transcriptional regulator PDPE_RS10080 PF00266 Aminotransferase class-V PDPE_RS10085 PF01592 NifU-like N terminal domain PDPE_RS10090 PF01521 Iron-sulphur cluster biosynthesis PDPE_RS10095 PF07743 HSCB C-terminal oligomerisation domain PDPE_RS10100 PF00012 Hsp70 protein PDPE_RS10105 PF00111 2Fe-2S iron-sulfur cluster binding domain PDPE_RS10110 PF04384 Iron-sulphur cluster assembly PDPE_RS10115 PF00883 Cytosol aminopeptidase family, catalytic domain PDPE_RS10115 PF12404 Peptidase PDPE_RS10120 PF00883 Cytosol aminopeptidase family, catalytic domain PDPE_RS10120 PF12404 Peptidase PDPE_RS10125 PF00334 Nucleoside diphosphate kinase PDPE_RS10130 PF04055 Radical SAM superfamily PDPE_RS10140 PF13464 Domain of unknown function (DUF4115) PDPE_RS10145 PF04551 GcpE protein PDPE_RS10150 PF03129 Anticodon binding domain PDPE_RS10150 PF13393 Histidyl-tRNA synthetase PDPE_RS10155 PF09976 Tetratricopeptide repeat-like domain PDPE_RS10160 PF13360 PQQ-like domain PDPE_RS10165 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PDPE_RS10165 PF01926 50S ribosome-binding GTPase PDPE_RS10180 PF13742 OB-fold nucleic acid binding domain PDPE_RS10180 PF02601 Exonuclease VII, large subunit PDPE_RS10185 PF00571 CBS domain PDPE_RS10185 PF00478 IMP dehydrogenase / GMP reductase domain PDPE_RS10190 PF02540 NAD synthase PDPE_RS10190 PF00117 Glutamine amidotransferase class-I PDPE_RS10190 PF00958 GMP synthase C terminal domain PDPE_RS10195 PF03806 AbgT putative transporter family PDPE_RS10200 PF00756 Putative esterase PDPE_RS10205 PF00107 Zinc-binding dehydrogenase PDPE_RS10205 PF08240 Alcohol dehydrogenase GroES-like domain PDPE_RS10210 PF03466 LysR substrate binding domain PDPE_RS10210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS10215 PF14437 MafB19-like deaminase PDPE_RS10230 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PDPE_RS10230 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PDPE_RS10230 PF02769 AIR synthase related protein, C-terminal domain PDPE_RS10240 PF00543 Nitrogen regulatory protein P-II PDPE_RS10250 PF00464 Serine hydroxymethyltransferase PDPE_RS10255 PF03477 ATP cone domain PDPE_RS10260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PDPE_RS10260 PF01872 RibD C-terminal domain PDPE_RS10265 PF00677 Lumazine binding domain PDPE_RS10270 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PDPE_RS10270 PF00925 GTP cyclohydrolase II PDPE_RS10275 PF00885 6,7-dimethyl-8-ribityllumazine synthase PDPE_RS10280 PF01029 NusB family PDPE_RS10285 PF00586 AIR synthase related protein, N-terminal domain PDPE_RS10285 PF02769 AIR synthase related protein, C-terminal domain PDPE_RS10290 PF04608 Phosphatidylglycerophosphatase A PDPE_RS10320 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PDPE_RS10320 PF02779 Transketolase, pyrimidine binding domain PDPE_RS10320 PF02780 Transketolase, C-terminal domain PDPE_RS10325 PF00348 Polyprenyl synthetase PDPE_RS10330 PF02609 Exonuclease VII small subunit PDPE_RS10345 PF13677 Membrane MotB of proton-channel complex MotA/MotB PDPE_RS10345 PF00691 OmpA family PDPE_RS10350 PF02926 THUMP domain PDPE_RS10350 PF02568 Thiamine biosynthesis protein (ThiI) PDPE_RS10355 PF01965 DJ-1/PfpI family PDPE_RS10360 PF08546 Ketopantoate reductase PanE/ApbA C terminal PDPE_RS10360 PF02558 Ketopantoate reductase PanE/ApbA PDPE_RS10365 PF03502 Nucleoside-specific channel-forming protein, Tsx PDPE_RS10380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PDPE_RS10390 PF05175 Methyltransferase small domain PDPE_RS10395 PF01722 BolA-like protein PDPE_RS10400 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PDPE_RS10400 PF11973 NQRA C-terminal domain PDPE_RS10405 PF03116 NQR2, RnfD, RnfE family PDPE_RS10410 PF04205 FMN-binding domain PDPE_RS10415 PF02508 Rnf-Nqr subunit, membrane protein PDPE_RS10420 PF02508 Rnf-Nqr subunit, membrane protein PDPE_RS10425 PF00175 Oxidoreductase NAD-binding domain PDPE_RS10425 PF00970 Oxidoreductase FAD-binding domain PDPE_RS10425 PF00111 2Fe-2S iron-sulfur cluster binding domain PDPE_RS10430 PF02424 ApbE family PDPE_RS10440 PF00817 impB/mucB/samB family PDPE_RS10440 PF11798 IMS family HHH motif PDPE_RS10440 PF11799 impB/mucB/samB family C-terminal domain PDPE_RS10445 PF01546 Peptidase family M20/M25/M40 PDPE_RS10445 PF07687 Peptidase dimerisation domain PDPE_RS10460 PF00860 Permease family PDPE_RS10465 PF00156 Phosphoribosyl transferase domain PDPE_RS10470 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) PDPE_RS10475 PF07417 Sigma factor-binding transcriptional regulator Crl PDPE_RS10480 PF01472 PUA domain PDPE_RS10480 PF00696 Amino acid kinase family PDPE_RS10485 PF00171 Aldehyde dehydrogenase family PDPE_RS10500 PF07687 Peptidase dimerisation domain PDPE_RS10500 PF01546 Peptidase family M20/M25/M40 PDPE_RS10505 PF03960 ArsC family PDPE_RS10515 PF00072 Response regulator receiver domain PDPE_RS10515 PF00196 Bacterial regulatory proteins, luxR family PDPE_RS10525 PF00037 4Fe-4S binding domain PDPE_RS10525 PF12800 4Fe-4S binding domain PDPE_RS10525 PF13187 4Fe-4S dicluster domain PDPE_RS10540 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) PDPE_RS10545 PF03264 NapC/NirT cytochrome c family, N-terminal region PDPE_RS10555 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS10590 PF04261 Dyp-type peroxidase family PDPE_RS10595 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PDPE_RS10600 PF05524 PEP-utilising enzyme, N-terminal PDPE_RS10600 PF02896 PEP-utilising enzyme, TIM barrel domain PDPE_RS10600 PF00391 PEP-utilising enzyme, mobile domain PDPE_RS10605 PF00381 PTS HPr component phosphorylation site PDPE_RS10610 PF00291 Pyridoxal-phosphate dependent enzyme PDPE_RS10620 PF04354 ZipA, C-terminal FtsZ-binding domain PDPE_RS10625 PF00533 BRCA1 C Terminus (BRCT) domain PDPE_RS10625 PF01653 NAD-dependent DNA ligase adenylation domain PDPE_RS10625 PF03120 NAD-dependent DNA ligase OB-fold domain PDPE_RS10625 PF12826 Helix-hairpin-helix motif PDPE_RS10625 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PDPE_RS10630 PF03573 outer membrane porin, OprD family PDPE_RS10640 PF00749 tRNA synthetases class I (E and Q), catalytic domain PDPE_RS10665 PF00665 Integrase core domain PDPE_RS10665 PF13276 HTH-like domain PDPE_RS10665 PF13333 Integrase core domain PDPE_RS10670 PF01527 Transposase PDPE_RS10720 PF00669 Bacterial flagellin N-terminal helical region PDPE_RS10720 PF00700 Bacterial flagellin C-terminal helical region PDPE_RS10730 PF07196 Flagellin hook IN motif PDPE_RS10730 PF02465 Flagellar hook-associated protein 2 N-terminus PDPE_RS10730 PF07195 Flagellar hook-associated protein 2 C-terminus PDPE_RS10740 PF02561 Flagellar protein FliS PDPE_RS10745 PF06490 Flagellar regulatory protein FleQ PDPE_RS10745 PF02954 Bacterial regulatory protein, Fis family PDPE_RS10745 PF00158 Sigma-54 interaction domain PDPE_RS10750 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS10755 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS10755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS10755 PF13188 PAS domain PDPE_RS10770 PF02049 Flagellar hook-basal body complex protein FliE PDPE_RS10780 PF01706 FliG C-terminal domain PDPE_RS10780 PF14842 FliG N-terminal domain PDPE_RS10780 PF14841 FliG middle domain PDPE_RS10790 PF18269 T3SS EscN ATPase C-terminal domain PDPE_RS10790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PDPE_RS10810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PDPE_RS10810 PF02154 Flagellar motor switch protein FliM PDPE_RS10815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PDPE_RS10820 PF04347 Flagellar biosynthesis protein, FliO PDPE_RS10830 PF01313 Bacterial export proteins, family 3 PDPE_RS10835 PF01311 Bacterial export proteins, family 1 PDPE_RS10840 PF01312 FlhB HrpN YscU SpaS Family PDPE_RS10850 PF00448 SRP54-type protein, GTPase domain PDPE_RS10855 PF10609 NUBPL iron-transfer P-loop NTPase PDPE_RS10875 PF00072 Response regulator receiver domain PDPE_RS10880 PF04344 Chemotaxis phosphatase, CheZ PDPE_RS10885 PF02895 Signal transducing histidine kinase, homodimeric domain PDPE_RS10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS10885 PF01584 CheW-like domain PDPE_RS10885 PF00072 Response regulator receiver domain PDPE_RS10885 PF01627 Hpt domain PDPE_RS10890 PF00072 Response regulator receiver domain PDPE_RS10890 PF01339 CheB methylesterase PDPE_RS10895 PF13614 AAA domain PDPE_RS10905 PF01584 CheW-like domain PDPE_RS10915 PF00005 ABC transporter PDPE_RS10920 PF03379 CcmB protein PDPE_RS10925 PF01578 Cytochrome C assembly protein PDPE_RS10930 PF04995 Heme exporter protein D (CcmD) PDPE_RS10935 PF03100 CcmE PDPE_RS10940 PF01578 Cytochrome C assembly protein PDPE_RS10940 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PDPE_RS10945 PF08534 Redoxin PDPE_RS10950 PF03918 Cytochrome C biogenesis protein PDPE_RS10955 PF03918 Cytochrome C biogenesis protein PDPE_RS10960 PF04333 MlaA lipoprotein PDPE_RS10965 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PDPE_RS10970 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PDPE_RS10985 PF04542 Sigma-70 region 2 PDPE_RS10985 PF08281 Sigma-70, region 4 PDPE_RS10990 PF02803 Thiolase, C-terminal domain PDPE_RS10990 PF00108 Thiolase, N-terminal domain PDPE_RS10995 PF00378 Enoyl-CoA hydratase/isomerase PDPE_RS10995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDPE_RS10995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PDPE_RS11000 PF00675 Insulinase (Peptidase family M16) PDPE_RS11000 PF16187 Middle or third domain of peptidase_M16 PDPE_RS11000 PF05193 Peptidase M16 inactive domain PDPE_RS11005 PF00300 Histidine phosphatase superfamily (branch 1) PDPE_RS11015 PF01713 Smr domain PDPE_RS11020 PF05175 Methyltransferase small domain PDPE_RS11025 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS11030 PF06508 Queuosine biosynthesis protein QueC PDPE_RS11040 PF13404 AsnC-type helix-turn-helix domain PDPE_RS11040 PF01037 Lrp/AsnC ligand binding domain PDPE_RS11045 PF04986 Putative transposase PDPE_RS11045 PF14319 Transposase zinc-binding domain PDPE_RS11060 PF09619 Type III secretion system lipoprotein chaperone (YscW) PDPE_RS11065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PDPE_RS11085 PF04986 Putative transposase PDPE_RS11085 PF14319 Transposase zinc-binding domain PDPE_RS11135 PF00881 Nitroreductase family PDPE_RS11140 PF03466 LysR substrate binding domain PDPE_RS11140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS11155 PF13533 Biotin-lipoyl like PDPE_RS11160 PF07690 Major Facilitator Superfamily PDPE_RS11165 PF01048 Phosphorylase superfamily PDPE_RS11175 PF00854 POT family PDPE_RS11195 PF10689 Protein of unknown function (DUF2496) PDPE_RS11205 PF01925 Sulfite exporter TauE/SafE PDPE_RS11215 PF13609 Gram-negative porin PDPE_RS11220 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PDPE_RS11230 PF04304 Protein of unknown function (DUF454) PDPE_RS11235 PF00156 Phosphoribosyl transferase domain PDPE_RS11240 PF12169 DNA polymerase III subunits gamma and tau domain III PDPE_RS11240 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PDPE_RS11240 PF12170 DNA polymerase III tau subunit V interacting with alpha PDPE_RS11245 PF02575 YbaB/EbfC DNA-binding family PDPE_RS11250 PF13662 Toprim domain PDPE_RS11250 PF02132 RecR protein PDPE_RS11260 PF17323 Trans-membrane regulatory protein ToxS PDPE_RS11270 PF00183 Hsp90 protein PDPE_RS11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS11275 PF05191 Adenylate kinase, active site lid PDPE_RS11280 PF00762 Ferrochelatase PDPE_RS11285 PF00294 pfkB family carbohydrate kinase PDPE_RS11290 PF13537 Glutamine amidotransferase domain PDPE_RS11290 PF00733 Asparagine synthase PDPE_RS11295 PF00999 Sodium/hydrogen exchanger family PDPE_RS11295 PF02254 TrkA-N domain PDPE_RS11300 PF01047 MarR family PDPE_RS11300 PF00480 ROK family PDPE_RS11305 PF01979 Amidohydrolase family PDPE_RS11310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PDPE_RS11315 PF02378 Phosphotransferase system, EIIC PDPE_RS11315 PF00367 phosphotransferase system, EIIB PDPE_RS11315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PDPE_RS11320 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain PDPE_RS11320 PF03173 Putative carbohydrate binding domain PDPE_RS11320 PF00728 Glycosyl hydrolase family 20, catalytic domain PDPE_RS11320 PF02838 Glycosyl hydrolase family 20, domain 2 PDPE_RS11325 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PDPE_RS11325 PF00749 tRNA synthetases class I (E and Q), catalytic domain PDPE_RS11330 PF01475 Ferric uptake regulator family PDPE_RS11340 PF00258 Flavodoxin PDPE_RS11350 PF12697 Alpha/beta hydrolase family PDPE_RS11355 PF17206 SeqA protein N-terminal domain PDPE_RS11355 PF03925 SeqA protein C-terminal domain PDPE_RS11360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PDPE_RS11360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PDPE_RS11360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PDPE_RS11360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PDPE_RS11375 PF01784 NIF3 (NGG1p interacting factor 3) PDPE_RS11380 PF00285 Citrate synthase, C-terminal domain PDPE_RS11385 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PDPE_RS11395 PF00890 FAD binding domain PDPE_RS11395 PF02910 Fumarate reductase flavoprotein C-term PDPE_RS11400 PF13085 2Fe-2S iron-sulfur cluster binding domain PDPE_RS11405 PF16078 2-oxoglutarate dehydrogenase N-terminus PDPE_RS11405 PF02779 Transketolase, pyrimidine binding domain PDPE_RS11405 PF00676 Dehydrogenase E1 component PDPE_RS11405 PF16870 2-oxoglutarate dehydrogenase C-terminal PDPE_RS11410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PDPE_RS11410 PF00364 Biotin-requiring enzyme PDPE_RS11410 PF02817 e3 binding domain PDPE_RS11415 PF08442 ATP-grasp domain PDPE_RS11415 PF00549 CoA-ligase PDPE_RS11420 PF00549 CoA-ligase PDPE_RS11420 PF02629 CoA binding domain PDPE_RS11425 PF00950 ABC 3 transport family PDPE_RS11430 PF00005 ABC transporter PDPE_RS11435 PF01297 Zinc-uptake complex component A periplasmic PDPE_RS11450 PF07670 Nucleoside recognition PDPE_RS11450 PF02421 Ferrous iron transport protein B PDPE_RS11450 PF07664 Ferrous iron transport protein B C terminus PDPE_RS11470 PF00750 tRNA synthetases class I (R) PDPE_RS11470 PF03485 Arginyl tRNA synthetase N terminal domain PDPE_RS11470 PF05746 DALR anticodon binding domain PDPE_RS11475 PF06185 YecM protein PDPE_RS11480 PF00551 Formyl transferase PDPE_RS11480 PF01842 ACT domain PDPE_RS11485 PF04851 Type III restriction enzyme, res subunit PDPE_RS11485 PF13307 Helicase C-terminal domain PDPE_RS11490 PF00814 Glycoprotease family PDPE_RS11500 PF12697 Alpha/beta hydrolase family PDPE_RS11500 PF08241 Methyltransferase domain PDPE_RS11505 PF13193 AMP-binding enzyme C-terminal domain PDPE_RS11505 PF00501 AMP-binding enzyme PDPE_RS11510 PF00570 HRDC domain PDPE_RS11510 PF01612 3'-5' exonuclease PDPE_RS11515 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS11520 PF03776 Septum formation topological specificity factor MinE PDPE_RS11525 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PDPE_RS11530 PF03775 Septum formation inhibitor MinC, C-terminal domain PDPE_RS11530 PF05209 Septum formation inhibitor MinC, N-terminal domain PDPE_RS11535 PF05166 YcgL domain PDPE_RS11540 PF13406 Transglycosylase SLT domain PDPE_RS11550 PF00816 H-NS histone family PDPE_RS11560 PF03553 Na+/H+ antiporter family PDPE_RS11565 PF00265 Thymidine kinase PDPE_RS11570 PF09905 DNA-binding protein VF530 PDPE_RS11580 PF01502 Phosphoribosyl-AMP cyclohydrolase PDPE_RS11580 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PDPE_RS11585 PF00977 Histidine biosynthesis protein PDPE_RS11590 PF00977 Histidine biosynthesis protein PDPE_RS11595 PF00117 Glutamine amidotransferase class-I PDPE_RS11600 PF00475 Imidazoleglycerol-phosphate dehydratase PDPE_RS11600 PF08645 Polynucleotide kinase 3 phosphatase PDPE_RS11605 PF00155 Aminotransferase class I and II PDPE_RS11610 PF00815 Histidinol dehydrogenase PDPE_RS11615 PF08029 HisG, C-terminal domain PDPE_RS11615 PF01634 ATP phosphoribosyltransferase PDPE_RS11625 PF08668 HDOD domain PDPE_RS11625 PF00563 EAL domain PDPE_RS11635 PF00149 Calcineurin-like phosphoesterase PDPE_RS11640 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PDPE_RS11645 PF09190 DALR domain PDPE_RS11645 PF01406 tRNA synthetases class I (C) catalytic domain PDPE_RS11650 PF03009 Glycerophosphoryl diester phosphodiesterase family PDPE_RS11660 PF01914 MarC family integral membrane protein PDPE_RS11680 PF08443 RimK-like ATP-grasp domain PDPE_RS11680 PF18030 RimK PreATP-grasp domain PDPE_RS11685 PF08003 Protein of unknown function (DUF1698) PDPE_RS11690 PF13649 Methyltransferase domain PDPE_RS11700 PF01336 OB-fold nucleic acid binding domain PDPE_RS11700 PF00152 tRNA synthetases class II (D, K and N) PDPE_RS11700 PF02938 GAD domain PDPE_RS11705 PF01709 Transcriptional regulator PDPE_RS11710 PF02075 Crossover junction endodeoxyribonuclease RuvC PDPE_RS11715 PF07499 RuvA, C-terminal domain PDPE_RS11715 PF01330 RuvA N terminal domain PDPE_RS11720 PF05491 RuvB C-terminal winged helix domain PDPE_RS11720 PF17864 RuvB AAA lid domain PDPE_RS11720 PF05496 Holliday junction DNA helicase RuvB P-loop domain PDPE_RS11725 PF00701 Dihydrodipicolinate synthetase family PDPE_RS11730 PF01380 SIS domain PDPE_RS11730 PF01418 Helix-turn-helix domain, rpiR family PDPE_RS11735 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase PDPE_RS11740 PF00480 ROK family PDPE_RS11745 PF04074 YhcH/YjgK/YiaL PDPE_RS11750 PF01654 Cytochrome bd terminal oxidase subunit I PDPE_RS11755 PF02322 Cytochrome bd terminal oxidase subunit II PDPE_RS11760 PF08173 Membrane bound YbgT-like protein PDPE_RS11770 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS11780 PF01618 MotA/TolQ/ExbB proton channel family PDPE_RS11785 PF02472 Biopolymer transport protein ExbD/TolR PDPE_RS11795 PF04052 TolB amino-terminal domain PDPE_RS11795 PF07676 WD40-like Beta Propeller Repeat PDPE_RS11800 PF00691 OmpA family PDPE_RS11805 PF13174 Tetratricopeptide repeat PDPE_RS11805 PF16331 TolA binding protein trimerisation PDPE_RS11810 PF02445 Quinolinate synthetase A protein PDPE_RS11815 PF00072 Response regulator receiver domain PDPE_RS11815 PF09308 LuxQ, periplasmic PDPE_RS11815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS11815 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS11870 PF03793 PASTA domain PDPE_RS11870 PF00069 Protein kinase domain PDPE_RS11875 PF03793 PASTA domain PDPE_RS11875 PF00069 Protein kinase domain PDPE_RS11905 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS11940 PF13183 4Fe-4S dicluster domain PDPE_RS11940 PF01565 FAD binding domain PDPE_RS11940 PF02913 FAD linked oxidases, C-terminal domain PDPE_RS11960 PF03466 LysR substrate binding domain PDPE_RS11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS11990 PF02253 Phospholipase A1 PDPE_RS12060 PF04266 ASCH domain PDPE_RS12100 PF03606 C4-dicarboxylate anaerobic carrier PDPE_RS12105 PF03466 LysR substrate binding domain PDPE_RS12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS12115 PF13183 4Fe-4S dicluster domain PDPE_RS12115 PF02754 Cysteine-rich domain PDPE_RS12120 PF00890 FAD binding domain PDPE_RS12125 PF04324 BFD-like [2Fe-2S] binding domain PDPE_RS12125 PF01266 FAD dependent oxidoreductase PDPE_RS12155 PF00924 Mechanosensitive ion channel PDPE_RS12155 PF05552 Conserved TM helix PDPE_RS12175 PF03466 LysR substrate binding domain PDPE_RS12175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS12180 PF01773 Na+ dependent nucleoside transporter N-terminus PDPE_RS12180 PF07670 Nucleoside recognition PDPE_RS12180 PF07662 Na+ dependent nucleoside transporter C-terminus PDPE_RS12190 PF05656 Protein of unknown function (DUF805) PDPE_RS12200 PF04143 Sulphur transport PDPE_RS12215 PF03222 Tryptophan/tyrosine permease family PDPE_RS12230 PF01476 LysM domain PDPE_RS12230 PF00877 NlpC/P60 family PDPE_RS12250 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PDPE_RS12250 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PDPE_RS12255 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PDPE_RS12260 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PDPE_RS12260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PDPE_RS12265 PF01235 Sodium:alanine symporter family PDPE_RS12270 PF00384 Molybdopterin oxidoreductase PDPE_RS12270 PF18364 Molybdopterin oxidoreductase N-terminal domain PDPE_RS12270 PF01568 Molydopterin dinucleotide binding domain PDPE_RS12275 PF03264 NapC/NirT cytochrome c family, N-terminal region PDPE_RS12280 PF06796 Periplasmic nitrate reductase protein NapE PDPE_RS12285 PF01259 SAICAR synthetase PDPE_RS12300 PF13361 UvrD-like helicase C-terminal domain PDPE_RS12300 PF00580 UvrD/REP helicase N-terminal domain PDPE_RS12305 PF00375 Sodium:dicarboxylate symporter family PDPE_RS12310 PF04828 Glutathione-dependent formaldehyde-activating enzyme PDPE_RS12315 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS12320 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS12330 PF01566 Natural resistance-associated macrophage protein PDPE_RS12390 PF03306 Alpha-acetolactate decarboxylase PDPE_RS12395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PDPE_RS12395 PF00205 Thiamine pyrophosphate enzyme, central domain PDPE_RS12395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PDPE_RS12400 PF00294 pfkB family carbohydrate kinase PDPE_RS12410 PF00294 pfkB family carbohydrate kinase PDPE_RS12425 PF00535 Glycosyl transferase family 2 PDPE_RS12435 PF00893 Small Multidrug Resistance protein PDPE_RS12440 PF13520 Amino acid permease PDPE_RS12500 PF01554 MatE PDPE_RS12505 PF00677 Lumazine binding domain PDPE_RS12515 PF13419 Haloacid dehalogenase-like hydrolase PDPE_RS12520 PF03881 Fructosamine kinase PDPE_RS12525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PDPE_RS12525 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PDPE_RS12525 PF02824 TGS domain PDPE_RS12525 PF03129 Anticodon binding domain PDPE_RS12530 PF00707 Translation initiation factor IF-3, C-terminal domain PDPE_RS12530 PF05198 Translation initiation factor IF-3, N-terminal domain PDPE_RS12535 PF01632 Ribosomal protein L35 PDPE_RS12540 PF00453 Ribosomal protein L20 PDPE_RS12545 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS12555 PF03264 NapC/NirT cytochrome c family, N-terminal region PDPE_RS12570 PF04986 Putative transposase PDPE_RS12570 PF14319 Transposase zinc-binding domain PDPE_RS12585 PF01925 Sulfite exporter TauE/SafE PDPE_RS12590 PF03466 LysR substrate binding domain PDPE_RS12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS12605 PF03734 L,D-transpeptidase catalytic domain PDPE_RS12605 PF01471 Putative peptidoglycan binding domain PDPE_RS12610 PF05951 Bacterial protein of unknown function (DUF882) PDPE_RS12630 PF00753 Metallo-beta-lactamase superfamily PDPE_RS12635 PF00196 Bacterial regulatory proteins, luxR family PDPE_RS12635 PF00072 Response regulator receiver domain PDPE_RS12640 PF07730 Histidine kinase PDPE_RS12640 PF05231 MASE1 PDPE_RS12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS12645 PF07690 Major Facilitator Superfamily PDPE_RS12650 PF04542 Sigma-70 region 2 PDPE_RS12650 PF00140 Sigma-70 factor, region 1.2 PDPE_RS12650 PF04545 Sigma-70, region 4 PDPE_RS12650 PF04539 Sigma-70 region 3 PDPE_RS12670 PF00155 Aminotransferase class I and II PDPE_RS12675 PF00378 Enoyl-CoA hydratase/isomerase PDPE_RS12680 PF07670 Nucleoside recognition PDPE_RS12680 PF01773 Na+ dependent nucleoside transporter N-terminus PDPE_RS12680 PF07662 Na+ dependent nucleoside transporter C-terminus PDPE_RS12690 PF00563 EAL domain PDPE_RS12720 PF02581 Thiamine monophosphate synthase PDPE_RS12725 PF02110 Hydroxyethylthiazole kinase family PDPE_RS12730 PF00152 tRNA synthetases class II (D, K and N) PDPE_RS12730 PF01336 OB-fold nucleic acid binding domain PDPE_RS12735 PF04055 Radical SAM superfamily PDPE_RS12740 PF00480 ROK family PDPE_RS12745 PF03466 LysR substrate binding domain PDPE_RS12745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS12750 PF02589 LUD domain PDPE_RS12760 PF13183 4Fe-4S dicluster domain PDPE_RS12760 PF02589 LUD domain PDPE_RS12760 PF11870 Domain of unknown function (DUF3390) PDPE_RS12765 PF02754 Cysteine-rich domain PDPE_RS12770 PF02652 L-lactate permease PDPE_RS12785 PF00202 Aminotransferase class-III PDPE_RS12800 PF01914 MarC family integral membrane protein PDPE_RS12815 PF00155 Aminotransferase class I and II PDPE_RS12820 PF08241 Methyltransferase domain PDPE_RS12835 PF01435 Peptidase family M48 PDPE_RS12860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PDPE_RS12865 PF00005 ABC transporter PDPE_RS12905 PF04986 Putative transposase PDPE_RS12905 PF14319 Transposase zinc-binding domain PDPE_RS12930 PF00579 tRNA synthetases class I (W and Y) PDPE_RS12945 PF00005 ABC transporter PDPE_RS12945 PF12558 ATP-binding cassette cobalt transporter PDPE_RS12950 PF07155 ECF-type riboflavin transporter, S component PDPE_RS12955 PF00196 Bacterial regulatory proteins, luxR family PDPE_RS12955 PF00072 Response regulator receiver domain PDPE_RS12960 PF01541 GIY-YIG catalytic domain PDPE_RS12960 PF02151 UvrB/uvrC motif PDPE_RS12960 PF08459 UvrC Helix-hairpin-helix N-terminal PDPE_RS12965 PF01066 CDP-alcohol phosphatidyltransferase PDPE_RS13050 PF00491 Arginase family PDPE_RS13055 PF00141 Peroxidase PDPE_RS13080 PF05593 RHS Repeat PDPE_RS13080 PF03527 RHS protein PDPE_RS13115 PF01420 Type I restriction modification DNA specificity domain PDPE_RS13130 PF01544 CorA-like Mg2+ transporter protein PDPE_RS13135 PF11898 Domain of unknown function (DUF3418) PDPE_RS13135 PF00270 DEAD/DEAH box helicase PDPE_RS13135 PF04408 Helicase associated domain (HA2) PDPE_RS13135 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PDPE_RS13135 PF00271 Helicase conserved C-terminal domain PDPE_RS13155 PF04224 Protein of unknown function, DUF417 PDPE_RS13190 PF07859 alpha/beta hydrolase fold PDPE_RS13195 PF00768 D-alanyl-D-alanine carboxypeptidase PDPE_RS13205 PF05638 Type VI secretion system effector, Hcp PDPE_RS13210 PF04717 Type VI secretion system, phage-baseplate injector PDPE_RS13225 PF04994 TfoX C-terminal domain PDPE_RS13225 PF04993 TfoX N-terminal domain PDPE_RS13230 PF00356 Bacterial regulatory proteins, lacI family PDPE_RS13235 PF00005 ABC transporter PDPE_RS13240 PF01032 FecCD transport family PDPE_RS13250 PF02472 Biopolymer transport protein ExbD/TolR PDPE_RS13255 PF01618 MotA/TolQ/ExbB proton channel family PDPE_RS13260 PF03544 Gram-negative bacterial TonB protein C-terminal PDPE_RS13265 PF04055 Radical SAM superfamily PDPE_RS13270 PF06228 Haem utilisation ChuX/HutX PDPE_RS13275 PF01243 Pyridoxamine 5'-phosphate oxidase PDPE_RS13300 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PDPE_RS13305 PF00814 Glycoprotease family PDPE_RS13305 PF00583 Acetyltransferase (GNAT) family PDPE_RS13310 PF02631 RecX family PDPE_RS13325 PF02613 Nitrate reductase delta subunit PDPE_RS13330 PF00384 Molybdopterin oxidoreductase PDPE_RS13330 PF18364 Molybdopterin oxidoreductase N-terminal domain PDPE_RS13330 PF01568 Molydopterin dinucleotide binding domain PDPE_RS13335 PF03264 NapC/NirT cytochrome c family, N-terminal region PDPE_RS13340 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS13340 PF00072 Response regulator receiver domain PDPE_RS13370 PF00209 Sodium:neurotransmitter symporter family PDPE_RS13375 PF13302 Acetyltransferase (GNAT) domain PDPE_RS13375 PF03352 Methyladenine glycosylase PDPE_RS13375 PF13673 Acetyltransferase (GNAT) domain PDPE_RS13375 PF00117 Glutamine amidotransferase class-I PDPE_RS13375 PF00958 GMP synthase C terminal domain PDPE_RS13395 PF01734 Patatin-like phospholipase PDPE_RS13400 PF02833 DHHA2 domain PDPE_RS13400 PF01368 DHH family PDPE_RS13420 PF04074 YhcH/YjgK/YiaL PDPE_RS13440 PF00925 GTP cyclohydrolase II PDPE_RS13445 PF07690 Major Facilitator Superfamily PDPE_RS13450 PF04269 Protein of unknown function, DUF440 PDPE_RS13455 PF01132 Elongation factor P (EF-P) OB domain PDPE_RS13455 PF09285 Elongation factor P, C-terminal PDPE_RS13455 PF08207 Elongation factor P (EF-P) KOW-like domain PDPE_RS13475 PF06945 Protein of unknown function (DUF1289) PDPE_RS13480 PF01386 Ribosomal L25p family PDPE_RS13495 PF00849 RNA pseudouridylate synthase PDPE_RS13495 PF01479 S4 domain PDPE_RS13510 PF00271 Helicase conserved C-terminal domain PDPE_RS13510 PF04851 Type III restriction enzyme, res subunit PDPE_RS13525 PF00294 pfkB family carbohydrate kinase PDPE_RS13550 PF01569 PAP2 superfamily PDPE_RS13595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS13600 PF00994 Probable molybdopterin binding domain PDPE_RS13600 PF03454 MoeA C-terminal region (domain IV) PDPE_RS13600 PF03453 MoeA N-terminal region (domain I and II) PDPE_RS13605 PF12804 MobA-like NTP transferase domain PDPE_RS13610 PF00005 ABC transporter PDPE_RS13610 PF08402 TOBE domain PDPE_RS13620 PF12849 PBP superfamily domain PDPE_RS13625 PF02954 Bacterial regulatory protein, Fis family PDPE_RS13625 PF00158 Sigma-54 interaction domain PDPE_RS13625 PF00072 Response regulator receiver domain PDPE_RS13630 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS13630 PF00989 PAS fold PDPE_RS13630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS13680 PF02028 BCCT, betaine/carnitine/choline family transporter PDPE_RS13715 PF03942 DTW domain PDPE_RS13720 PF00480 ROK family PDPE_RS13725 PF00270 DEAD/DEAH box helicase PDPE_RS13725 PF00271 Helicase conserved C-terminal domain PDPE_RS13735 PF00939 Sodium:sulfate symporter transmembrane region PDPE_RS13740 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS13745 PF02698 DUF218 domain PDPE_RS13750 PF03949 Malic enzyme, NAD binding domain PDPE_RS13750 PF00390 Malic enzyme, N-terminal domain PDPE_RS13755 PF00378 Enoyl-CoA hydratase/isomerase PDPE_RS13770 PF11756 Nitrous oxide-stimulated promoter PDPE_RS13780 PF05724 Thiopurine S-methyltransferase (TPMT) PDPE_RS13785 PF02222 ATP-grasp domain PDPE_RS13785 PF01370 NAD dependent epimerase/dehydratase family PDPE_RS13790 PF00892 EamA-like transporter family PDPE_RS13795 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region PDPE_RS13795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PDPE_RS13800 PF04172 LrgB-like family PDPE_RS13805 PF03788 LrgA family PDPE_RS13815 PF08411 Exonuclease C-terminal PDPE_RS13815 PF00929 Exonuclease PDPE_RS13830 PF04363 Protein of unknown function (DUF496) PDPE_RS13835 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF PDPE_RS13835 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF PDPE_RS13835 PF01189 16S rRNA methyltransferase RsmB/F PDPE_RS13865 PF02470 MlaD protein PDPE_RS13870 PF04403 Paraquat-inducible protein A PDPE_RS13875 PF00664 ABC transporter transmembrane region PDPE_RS13875 PF00005 ABC transporter PDPE_RS13880 PF13185 GAF domain PDPE_RS13885 PF04352 ProQ/FINO family PDPE_RS13885 PF17516 ProQ C-terminal domain PDPE_RS13890 PF17804 Tail specific protease N-terminal domain PDPE_RS13890 PF11818 C-terminal domain of tail specific protease (DUF3340) PDPE_RS13890 PF00595 PDZ domain PDPE_RS13890 PF03572 Peptidase family S41 PDPE_RS13900 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PDPE_RS13900 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PDPE_RS13905 PF11940 Domain of unknown function (DUF3458) Ig-like fold PDPE_RS13905 PF01433 Peptidase family M1 domain PDPE_RS13905 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PDPE_RS13915 PF01180 Dihydroorotate dehydrogenase PDPE_RS13920 PF07126 Cell-division protein ZapC PDPE_RS13925 PF01170 Putative RNA methylase family UPF0020 PDPE_RS13925 PF02926 THUMP domain PDPE_RS13925 PF10672 S-adenosylmethionine-dependent methyltransferase PDPE_RS13935 PF00005 ABC transporter PDPE_RS13935 PF16326 ABC transporter C-terminal domain PDPE_RS13935 PF12848 ABC transporter PDPE_RS13945 PF04957 Ribosome modulation factor PDPE_RS13950 PF07977 FabA-like domain PDPE_RS13955 PF13654 AAA domain PDPE_RS13955 PF05362 Lon protease (S16) C-terminal proteolytic domain PDPE_RS13960 PF06303 MatP N-terminal domain PDPE_RS13960 PF17414 MatP C-terminal ribbon-helix-helix domain PDPE_RS14000 PF07963 Prokaryotic N-terminal methylation motif PDPE_RS14010 PF02028 BCCT, betaine/carnitine/choline family transporter PDPE_RS14015 PF02028 BCCT, betaine/carnitine/choline family transporter PDPE_RS14030 PF00072 Response regulator receiver domain PDPE_RS14030 PF09308 LuxQ, periplasmic PDPE_RS14030 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS14030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS14050 PF00115 Cytochrome C and Quinol oxidase polypeptide I PDPE_RS14065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III PDPE_RS14065 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP PDPE_RS14075 PF00403 Heavy-metal-associated domain PDPE_RS14090 PF00027 Cyclic nucleotide-binding domain PDPE_RS14090 PF13545 Crp-like helix-turn-helix domain PDPE_RS14095 PF00582 Universal stress protein family PDPE_RS14100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS14110 PF01171 PP-loop family PDPE_RS14125 PF07943 Penicillin-binding protein 5, C-terminal domain PDPE_RS14125 PF00768 D-alanyl-D-alanine carboxypeptidase PDPE_RS14130 PF02074 Carboxypeptidase Taq (M32) metallopeptidase PDPE_RS14145 PF09722 Protein of unknown function (DUF2384) PDPE_RS14170 PF08402 TOBE domain PDPE_RS14170 PF00005 ABC transporter PDPE_RS14175 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS14180 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS14185 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS14190 PF13416 Bacterial extracellular solute-binding protein PDPE_RS14195 PF13416 Bacterial extracellular solute-binding protein PDPE_RS14210 PF02146 Sir2 family PDPE_RS14220 PF13247 4Fe-4S dicluster domain PDPE_RS14225 PF00384 Molybdopterin oxidoreductase PDPE_RS14225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PDPE_RS14225 PF00384 Molybdopterin oxidoreductase PDPE_RS14225 PF01568 Molydopterin dinucleotide binding domain PDPE_RS14225 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PDPE_RS14225 PF12838 4Fe-4S dicluster domain PDPE_RS14225 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PDPE_RS14225 PF01568 Molydopterin dinucleotide binding domain PDPE_RS14225 PF12838 4Fe-4S dicluster domain PDPE_RS14225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PDPE_RS14235 PF02613 Nitrate reductase delta subunit PDPE_RS14255 PF02634 FdhD/NarQ family PDPE_RS14265 PF00106 short chain dehydrogenase PDPE_RS14275 PF00440 Bacterial regulatory proteins, tetR family PDPE_RS14275 PF08360 QacR-like protein, C-terminal region PDPE_RS14280 PF08000 Bacterial PH domain PDPE_RS14280 PF11724 YvbH-like oligomerisation region PDPE_RS14300 PF02627 Carboxymuconolactone decarboxylase family PDPE_RS14305 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS14305 PF00403 Heavy-metal-associated domain PDPE_RS14305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PDPE_RS14310 PF13416 Bacterial extracellular solute-binding protein PDPE_RS14320 PF00005 ABC transporter PDPE_RS14325 PF01066 CDP-alcohol phosphatidyltransferase PDPE_RS14330 PF03466 LysR substrate binding domain PDPE_RS14330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS14335 PF07690 Major Facilitator Superfamily PDPE_RS14340 PF00005 ABC transporter PDPE_RS14345 PF00497 Bacterial extracellular solute-binding proteins, family 3 PDPE_RS14365 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS14380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PDPE_RS14395 PF00657 GDSL-like Lipase/Acylhydrolase PDPE_RS14400 PF02635 DsrE/DsrF-like family PDPE_RS14410 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS14430 PF03707 Bacterial signalling protein N terminal repeat PDPE_RS14430 PF00990 Diguanylate cyclase, GGDEF domain PDPE_RS14430 PF00563 EAL domain PDPE_RS14455 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS14460 PF03616 Sodium/glutamate symporter PDPE_RS14470 PF00497 Bacterial extracellular solute-binding proteins, family 3 PDPE_RS14475 PF01027 Inhibitor of apoptosis-promoting Bax1 PDPE_RS14480 PF04358 DsrC like protein PDPE_RS14485 PF00708 Acylphosphatase PDPE_RS14490 PF17785 PUA-like domain PDPE_RS14490 PF10672 S-adenosylmethionine-dependent methyltransferase PDPE_RS14495 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PDPE_RS14500 PF00704 Glycosyl hydrolases family 18 PDPE_RS14500 PF06483 Chitinase C PDPE_RS14515 PF00857 Isochorismatase family PDPE_RS14530 PF13419 Haloacid dehalogenase-like hydrolase PDPE_RS14545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PDPE_RS14545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PDPE_RS14550 PF01022 Bacterial regulatory protein, arsR family PDPE_RS14560 PF05199 GMC oxidoreductase PDPE_RS14560 PF00732 GMC oxidoreductase PDPE_RS14570 PF06974 Protein of unknown function (DUF1298) PDPE_RS14570 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain PDPE_RS14575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS14580 PF08019 Phosphoethanolamine transferase EptA/EptB PDPE_RS14580 PF00884 Sulfatase PDPE_RS14595 PF00577 Outer membrane usher protein PDPE_RS14595 PF13954 PapC N-terminal domain PDPE_RS14595 PF13953 PapC C-terminal domain PDPE_RS14605 PF01914 MarC family integral membrane protein PDPE_RS14655 PF03741 Integral membrane protein TerC family PDPE_RS14660 PF01471 Putative peptidoglycan binding domain PDPE_RS14660 PF03734 L,D-transpeptidase catalytic domain PDPE_RS14675 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS14680 PF11230 Protein of unknown function (DUF3029) PDPE_RS14685 PF04055 Radical SAM superfamily PDPE_RS14695 PF01227 GTP cyclohydrolase I PDPE_RS14705 PF00994 Probable molybdopterin binding domain PDPE_RS14705 PF03454 MoeA C-terminal region (domain IV) PDPE_RS14705 PF03453 MoeA N-terminal region (domain I and II) PDPE_RS14710 PF00899 ThiF family PDPE_RS14715 PF07670 Nucleoside recognition PDPE_RS14715 PF07662 Na+ dependent nucleoside transporter C-terminus PDPE_RS14715 PF01773 Na+ dependent nucleoside transporter N-terminus PDPE_RS14730 PF03466 LysR substrate binding domain PDPE_RS14730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS14745 PF00474 Sodium:solute symporter family PDPE_RS14750 PF10396 GTP-binding protein TrmE N-terminus PDPE_RS14750 PF12631 MnmE helical domain PDPE_RS14750 PF01926 50S ribosome-binding GTPase PDPE_RS14765 PF07687 Peptidase dimerisation domain PDPE_RS14765 PF01546 Peptidase family M20/M25/M40 PDPE_RS14780 PF00005 ABC transporter PDPE_RS14800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PDPE_RS14805 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PDPE_RS14815 PF00005 ABC transporter PDPE_RS14815 PF12848 ABC transporter PDPE_RS14835 PF08240 Alcohol dehydrogenase GroES-like domain PDPE_RS14835 PF00107 Zinc-binding dehydrogenase PDPE_RS14840 PF00155 Aminotransferase class I and II PDPE_RS14845 PF03466 LysR substrate binding domain PDPE_RS14845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS14850 PF03702 Anhydro-N-acetylmuramic acid kinase PDPE_RS14855 PF17676 LD-carboxypeptidase C-terminal domain PDPE_RS14855 PF02016 LD-carboxypeptidase N-terminal domain PDPE_RS14865 PF01327 Polypeptide deformylase PDPE_RS14870 PF00072 Response regulator receiver domain PDPE_RS14870 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS14870 PF01627 Hpt domain PDPE_RS14870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS14900 PF02378 Phosphotransferase system, EIIC PDPE_RS14900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PDPE_RS14905 PF00294 pfkB family carbohydrate kinase PDPE_RS14915 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PDPE_RS14915 PF00356 Bacterial regulatory proteins, lacI family PDPE_RS14920 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PDPE_RS14920 PF00391 PEP-utilising enzyme, mobile domain PDPE_RS14920 PF02896 PEP-utilising enzyme, TIM barrel domain PDPE_RS14925 PF00793 DAHP synthetase I family PDPE_RS14940 PF03279 Bacterial lipid A biosynthesis acyltransferase PDPE_RS14945 PF03279 Bacterial lipid A biosynthesis acyltransferase PDPE_RS14950 PF17820 PDZ domain PDPE_RS14950 PF02163 Peptidase family M50 PDPE_RS14955 PF01844 HNH endonuclease PDPE_RS14965 PF00012 Hsp70 protein PDPE_RS14970 PF00012 Hsp70 protein PDPE_RS14985 PF00005 ABC transporter PDPE_RS14995 PF00445 Ribonuclease T2 family PDPE_RS15005 PF01235 Sodium:alanine symporter family PDPE_RS15030 PF06445 GyrI-like small molecule binding domain PDPE_RS15030 PF12833 Helix-turn-helix domain PDPE_RS15050 PF01355 High potential iron-sulfur protein PDPE_RS15070 PF01235 Sodium:alanine symporter family PDPE_RS15090 PF01527 Transposase PDPE_RS15095 PF13276 HTH-like domain PDPE_RS15095 PF13333 Integrase core domain PDPE_RS15095 PF00665 Integrase core domain PDPE_RS15145 PF00005 ABC transporter PDPE_RS15150 PF01032 FecCD transport family PDPE_RS15155 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PDPE_RS15160 PF00216 Bacterial DNA-binding protein PDPE_RS15165 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS15170 PF01588 Putative tRNA binding domain PDPE_RS15170 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PDPE_RS15170 PF03147 Ferredoxin-fold anticodon binding domain PDPE_RS15170 PF03484 tRNA synthetase B5 domain PDPE_RS15170 PF03483 B3/4 domain PDPE_RS15175 PF01409 tRNA synthetases class II core domain (F) PDPE_RS15175 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PDPE_RS15205 PF04393 Protein of unknown function (DUF535) PDPE_RS15210 PF04310 MukB N-terminal PDPE_RS15210 PF16330 MukB hinge domain PDPE_RS15215 PF04288 MukE-like family PDPE_RS15220 PF17192 MukF middle domain PDPE_RS15220 PF17193 MukF C-terminal domain PDPE_RS15220 PF03882 MukF winged-helix domain PDPE_RS15225 PF13847 Methyltransferase domain PDPE_RS15235 PF00375 Sodium:dicarboxylate symporter family PDPE_RS15240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS15250 PF02348 Cytidylyltransferase PDPE_RS15255 PF03966 Trm112p-like protein PDPE_RS15260 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PDPE_RS15265 PF00664 ABC transporter transmembrane region PDPE_RS15265 PF00005 ABC transporter PDPE_RS15270 PF03772 Competence protein PDPE_RS15270 PF00753 Metallo-beta-lactamase superfamily PDPE_RS15280 PF13567 Domain of unknown function (DUF4131) PDPE_RS15280 PF03772 Competence protein PDPE_RS15280 PF00753 Metallo-beta-lactamase superfamily PDPE_RS15310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS15315 PF12704 MacB-like periplasmic core domain PDPE_RS15315 PF02687 FtsX-like permease family PDPE_RS15320 PF00005 ABC transporter PDPE_RS15325 PF12704 MacB-like periplasmic core domain PDPE_RS15325 PF02687 FtsX-like permease family PDPE_RS15335 PF02559 CarD-like/TRCF domain PDPE_RS15335 PF03461 TRCF domain PDPE_RS15335 PF17757 UvrB interaction domain PDPE_RS15335 PF00270 DEAD/DEAH box helicase PDPE_RS15335 PF00271 Helicase conserved C-terminal domain PDPE_RS15370 PF00196 Bacterial regulatory proteins, luxR family PDPE_RS15375 PF07992 Pyridine nucleotide-disulphide oxidoreductase PDPE_RS15405 PF08139 Prokaryotic membrane lipoprotein lipid attachment site PDPE_RS15405 PF13036 Peptidoglycan-synthase activator LpoB PDPE_RS15415 PF01230 HIT domain PDPE_RS15420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PDPE_RS15420 PF00672 HAMP domain PDPE_RS15425 PF01979 Amidohydrolase family PDPE_RS15435 PF13533 Biotin-lipoyl like PDPE_RS15450 PF04715 Anthranilate synthase component I, N terminal region PDPE_RS15450 PF00425 chorismate binding enzyme PDPE_RS15455 PF00293 NUDIX domain PDPE_RS15460 PF03222 Tryptophan/tyrosine permease family PDPE_RS15465 PF03313 Serine dehydratase alpha chain PDPE_RS15465 PF03315 Serine dehydratase beta chain PDPE_RS15470 PF12833 Helix-turn-helix domain PDPE_RS15485 PF01184 GPR1/FUN34/yaaH family PDPE_RS15490 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PDPE_RS15500 PF00462 Glutaredoxin PDPE_RS15505 PF06826 Predicted Permease Membrane Region PDPE_RS15505 PF02080 TrkA-C domain PDPE_RS15510 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS15510 PF00072 Response regulator receiver domain PDPE_RS15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS15520 PF07055 Enoyl reductase FAD binding domain PDPE_RS15520 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PDPE_RS15520 PF12241 Trans-2-enoyl-CoA reductase catalytic region PDPE_RS15525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PDPE_RS15525 PF09317 Domain of unknown function (DUF1974) PDPE_RS15525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PDPE_RS15525 PF02770 Acyl-CoA dehydrogenase, middle domain PDPE_RS15545 PF14319 Transposase zinc-binding domain PDPE_RS15545 PF04986 Putative transposase PDPE_RS15555 PF01370 NAD dependent epimerase/dehydratase family PDPE_RS15565 PF01380 SIS domain PDPE_RS15565 PF01418 Helix-turn-helix domain, rpiR family PDPE_RS15570 PF00224 Pyruvate kinase, barrel domain PDPE_RS15570 PF02887 Pyruvate kinase, alpha/beta domain PDPE_RS15590 PF14319 Transposase zinc-binding domain PDPE_RS15590 PF04986 Putative transposase PDPE_RS15600 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PDPE_RS15600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PDPE_RS15605 PF18024 Helix-turn-helix domain PDPE_RS15605 PF00158 Sigma-54 interaction domain PDPE_RS15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PDPE_RS15610 PF03466 LysR substrate binding domain PDPE_RS15615 PF05128 Domain of unknown function (DUF697) PDPE_RS15620 PF04317 YcjX-like family, DUF463 PDPE_RS15645 PF04012 PspA/IM30 family PDPE_RS15650 PF00158 Sigma-54 interaction domain PDPE_RS15650 PF02954 Bacterial regulatory protein, Fis family PDPE_RS15655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PDPE_RS15660 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS15665 PF12911 N-terminal TM domain of oligopeptide transport permease C PDPE_RS15665 PF00528 Binding-protein-dependent transport system inner membrane component PDPE_RS15670 PF00005 ABC transporter PDPE_RS15670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PDPE_RS15675 PF00005 ABC transporter PDPE_RS15690 PF04986 Putative transposase PDPE_RS15690 PF14319 Transposase zinc-binding domain PDPE_RS15700 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PDPE_RS15705 PF18073 Rubredoxin metal binding domain PDPE_RS15710 PF06305 Lipopolysaccharide assembly protein A domain PDPE_RS15715 PF00216 Bacterial DNA-binding protein PDPE_RS15720 PF00575 S1 RNA binding domain PDPE_RS15725 PF02224 Cytidylate kinase PDPE_RS15730 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PDPE_RS15735 PF09297 NADH pyrophosphatase zinc ribbon domain PDPE_RS15735 PF00293 NUDIX domain PDPE_RS15750 PF00486 Transcriptional regulatory protein, C terminal PDPE_RS15750 PF00072 Response regulator receiver domain PDPE_RS15755 PF00512 His Kinase A (phospho-acceptor) domain PDPE_RS15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDPE_RS15755 PF00672 HAMP domain PDPE_RS15760 PF08212 Lipocalin-like domain