locus-tag	class	description
AVI56_RS00020	COG0587	DNA-directed DNA polymerase activity
AVI56_RS00025	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AVI56_RS00030	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AVI56_RS00035	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AVI56_RS00040	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AVI56_RS00045	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AVI56_RS00065	COG3425	synthase
AVI56_RS00080	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
AVI56_RS00105	COG0575	Belongs to the CDS family
AVI56_RS00110	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AVI56_RS00115	COG0233	cytoplasmic translational termination
AVI56_RS00120	COG0528	UMP kinase activity
AVI56_RS00125	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AVI56_RS00130	COG0052	Belongs to the universal ribosomal protein uS2 family
AVI56_RS00140	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AVI56_RS00145	COG0252	asparaginase activity
AVI56_RS00150	COG2171	N-acyltransferase activity
AVI56_RS00160	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS00165	COG3385	transposase activity
AVI56_RS00170	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS00180	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AVI56_RS00190	COG1530	ribonuclease E activity
AVI56_RS00195	COG0424	maF-like protein
AVI56_RS00205	COG1792	Involved in formation and maintenance of cell shape
AVI56_RS00210	COG1077	Cell shape determining protein MreB Mrl
AVI56_RS00215	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AVI56_RS00220	COG0154	amidase activity
AVI56_RS00225	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AVI56_RS00230	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS00255	COG2801	Transposase and inactivated derivatives
AVI56_RS00305	COG1438	arginine binding
AVI56_RS00310	COG2871	sodium ion transport
AVI56_RS00315	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AVI56_RS00320	COG2801	Transposase and inactivated derivatives
AVI56_RS00340	COG2183	response to ionizing radiation
AVI56_RS00350	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AVI56_RS00355	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AVI56_RS00365	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AVI56_RS00380	COG2801	Transposase and inactivated derivatives
AVI56_RS00415	COG0179	Fumarylacetoacetate (FAA) hydrolase
AVI56_RS00425	COG0156	8-amino-7-oxononanoate synthase activity
AVI56_RS00430	COG2814	Major facilitator Superfamily
AVI56_RS00435	COG3385	transposase activity
AVI56_RS00450	COG2801	Transposase and inactivated derivatives
AVI56_RS00460	COG3385	transposase activity
AVI56_RS00485	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AVI56_RS00490	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AVI56_RS00500	COG0166	Belongs to the GPI family
AVI56_RS00525	COG3385	transposase activity
AVI56_RS00545	COG0471	metal ion transport
AVI56_RS00545	COG3273	potassium ion transport
AVI56_RS00550	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AVI56_RS00580	COG1760	l-serine dehydratase
AVI56_RS00585	COG0742	ribosomal rna small subunit methyltransferase
AVI56_RS00605	COG3385	transposase activity
AVI56_RS00610	COG3240	lipase activity
AVI56_RS00635	COG2963	transposase activity
AVI56_RS00650	COG2801	Transposase and inactivated derivatives
AVI56_RS00665	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS00680	COG2963	transposase activity
AVI56_RS00705	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AVI56_RS00720	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AVI56_RS00725	COG0670	Belongs to the BI1 family
AVI56_RS00740	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AVI56_RS00745	COG0739	heme binding
AVI56_RS00780	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AVI56_RS00790	COG0009	L-threonylcarbamoyladenylate synthase
AVI56_RS00795	COG2917	probably involved in intracellular septation
AVI56_RS00800	COG2350	Protein conserved in bacteria
AVI56_RS00815	COG0546	phosphoglycolate phosphatase activity
AVI56_RS00830	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS00850	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AVI56_RS00860	COG0205	6-phosphofructokinase activity
AVI56_RS00875	COG3385	transposase activity
AVI56_RS00880	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AVI56_RS00895	COG2884	Cell division ATP-binding protein ftsE
AVI56_RS00900	COG2177	Part of the ABC transporter FtsEX involved in
AVI56_RS00905	COG3385	transposase activity
AVI56_RS00910	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS00915	COG2801	Transposase and inactivated derivatives
AVI56_RS00935	COG0189	ligase activity
AVI56_RS00945	COG0307	riboflavin synthase, alpha
AVI56_RS00980	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS00985	COG2963	transposase activity
AVI56_RS01005	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AVI56_RS01010	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AVI56_RS01015	COG2814	Major facilitator Superfamily
AVI56_RS01020	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AVI56_RS01045	COG0784	Response regulator, receiver
AVI56_RS01045	COG0835	chemotaxis
AVI56_RS01090	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AVI56_RS01120	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01150	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AVI56_RS01155	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AVI56_RS01160	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AVI56_RS01175	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AVI56_RS01180	COG0735	belongs to the Fur family
AVI56_RS01215	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01230	COG3385	transposase activity
AVI56_RS01260	COG1051	belongs to the nudix hydrolase family
AVI56_RS01295	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01305	COG0840	transmembrane signaling receptor activity
AVI56_RS01310	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AVI56_RS01320	COG2271	Major facilitator Superfamily
AVI56_RS01325	COG1047	Peptidyl-prolyl cis-trans
AVI56_RS01330	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AVI56_RS01335	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AVI56_RS01340	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01345	COG0196	riboflavin kinase activity
AVI56_RS01350	COG0728	peptidoglycan biosynthetic process
AVI56_RS01410	COG2963	transposase activity
AVI56_RS01435	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01450	COG3385	transposase activity
AVI56_RS01475	COG0069	glutamate synthase activity
AVI56_RS01500	COG1881	PFAM PEBP family protein
AVI56_RS01510	COG0776	regulation of translation
AVI56_RS01515	COG0072	phenylalanine-tRNA ligase activity
AVI56_RS01530	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AVI56_RS01540	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AVI56_RS01560	COG2089	acid synthase
AVI56_RS01570	COG1083	cytidylyl-transferase
AVI56_RS01575	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AVI56_RS01580	COG1086	Polysaccharide biosynthesis protein
AVI56_RS01590	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
AVI56_RS01600	COG0556	nucleotide-excision repair
AVI56_RS01605	COG0436	Aminotransferase
AVI56_RS01610	COG0438	transferase activity, transferring glycosyl groups
AVI56_RS01635	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AVI56_RS01640	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AVI56_RS01645	COG1509	lysine 2,3-aminomutase activity
AVI56_RS01655	COG0840	transmembrane signaling receptor activity
AVI56_RS01660	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AVI56_RS01670	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AVI56_RS01675	COG0142	geranyltranstransferase activity
AVI56_RS01680	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AVI56_RS01690	COG0792	nuclease activity
AVI56_RS01695	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AVI56_RS01700	COG2969	positive regulation of protein catabolic process
AVI56_RS01705	COG0625	glutathione transferase activity
AVI56_RS01715	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AVI56_RS01720	COG1918	ferrous iron import across plasma membrane
AVI56_RS01745	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01765	COG0045	succinate-CoA ligase (ADP-forming) activity
AVI56_RS01780	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AVI56_RS01785	COG1053	succinate dehydrogenase
AVI56_RS01790	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AVI56_RS01795	COG2009	succinate dehydrogenase
AVI56_RS01840	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AVI56_RS01850	COG1677	Flagellar hook-basal body complex protein FliE
AVI56_RS01860	COG3852	Histidine kinase
AVI56_RS01875	COG0837	glucose binding
AVI56_RS01900	COG1113	amino acid transport
AVI56_RS01920	COG3385	transposase activity
AVI56_RS01925	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AVI56_RS01930	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AVI56_RS01940	COG0308	aminopeptidase N
AVI56_RS01945	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01955	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS01980	COG0500	methyltransferase
AVI56_RS01990	COG2205	protein histidine kinase activity
AVI56_RS02020	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AVI56_RS02075	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AVI56_RS02090	COG3385	transposase activity
AVI56_RS02110	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS02120	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AVI56_RS02150	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS02160	COG3385	transposase activity
AVI56_RS02165	COG3385	transposase activity
AVI56_RS02175	COG0833	amino acid
AVI56_RS02185	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AVI56_RS02195	COG3385	transposase activity
AVI56_RS02200	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS02215	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AVI56_RS02220	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AVI56_RS02235	COG1028	Short-chain dehydrogenase reductase Sdr
AVI56_RS02250	COG0084	hydrolase, TatD family'
AVI56_RS02280	COG3385	transposase activity
AVI56_RS02290	COG0316	Belongs to the HesB IscA family
AVI56_RS02300	COG1773	rubredoxin
AVI56_RS02310	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AVI56_RS02320	COG3385	transposase activity
AVI56_RS02350	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AVI56_RS02410	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AVI56_RS02420	COG0084	hydrolase, TatD family'
AVI56_RS02430	COG0456	acetyltransferase
AVI56_RS02440	COG1183	phosphatidylcholine synthase activity
AVI56_RS02485	COG3385	transposase activity
AVI56_RS02500	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS02520	COG3385	transposase activity
AVI56_RS02535	COG0552	protein localization to endoplasmic reticulum
AVI56_RS02550	COG2801	Transposase and inactivated derivatives
AVI56_RS02560	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AVI56_RS02565	COG3104	oligopeptide transport
AVI56_RS02570	COG3385	transposase activity
AVI56_RS02590	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AVI56_RS02600	COG1301	dicarboxylic acid transport
AVI56_RS02625	COG2995	paraquat-inducible protein a
AVI56_RS02630	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AVI56_RS02635	COG4536	flavin adenine dinucleotide binding
AVI56_RS02640	COG0586	Pfam SNARE associated Golgi protein
AVI56_RS02645	COG2070	2-Nitropropane dioxygenase
AVI56_RS02650	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AVI56_RS02670	COG2011	ABC-type metal ion transport system permease component
AVI56_RS02680	COG2925	Exonuclease
AVI56_RS02700	COG0531	amino acid
AVI56_RS02705	COG0745	RESPONSE REGULATOR receiver
AVI56_RS02720	COG0006	proline dipeptidase activity
AVI56_RS02725	COG0151	Belongs to the GarS family
AVI56_RS02730	COG0138	bifunctional purine biosynthesis protein purh
AVI56_RS02735	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AVI56_RS02750	COG0439	Biotin carboxylase
AVI56_RS02755	COG0511	ligase activity, forming carbon-carbon bonds
AVI56_RS02760	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AVI56_RS02765	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AVI56_RS02790	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AVI56_RS02795	COG0508	dehydrogenase complex catalyzes the overall conversion of
AVI56_RS02805	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AVI56_RS02810	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AVI56_RS02815	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AVI56_RS02825	COG1534	Rna-binding protein
AVI56_RS02855	COG3385	transposase activity
AVI56_RS02870	COG2119	membrane
AVI56_RS02875	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AVI56_RS02895	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AVI56_RS02925	COG0259	pyridoxamine-phosphate oxidase activity
AVI56_RS02955	COG0788	formyltetrahydrofolate deformylase activity
AVI56_RS02965	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AVI56_RS02980	COG0210	DNA helicase
AVI56_RS02995	COG2027	D-alanyl-D-alanine carboxypeptidase
AVI56_RS03000	COG2027	D-alanyl-D-alanine carboxypeptidase
AVI56_RS03015	COG1054	Belongs to the UPF0176 family
AVI56_RS03025	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AVI56_RS03030	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AVI56_RS03035	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AVI56_RS03090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AVI56_RS03095	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AVI56_RS03110	COG0318	PFAM AMP-dependent synthetase and ligase
AVI56_RS03120	COG0531	amino acid
AVI56_RS03130	COG0210	DNA helicase
AVI56_RS03145	COG0583	DNA-binding transcription factor activity
AVI56_RS03200	COG0181	hydroxymethylbilane synthase activity
AVI56_RS03220	COG0745	RESPONSE REGULATOR receiver
AVI56_RS03225	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AVI56_RS03230	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS03235	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AVI56_RS03240	COG1278	Cold shock
AVI56_RS03245	COG2885	chlorophyll binding
AVI56_RS03245	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AVI56_RS03255	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AVI56_RS03270	COG0438	transferase activity, transferring glycosyl groups
AVI56_RS03275	COG0297	glycogen (starch) synthase activity
AVI56_RS03285	COG1215	transferase activity, transferring glycosyl groups
AVI56_RS03290	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AVI56_RS03300	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AVI56_RS03315	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AVI56_RS03320	COG0489	protein tyrosine kinase activity
AVI56_RS03320	COG3206	protein involved in exopolysaccharide biosynthesis
AVI56_RS03355	COG4221	oxidoreductase activity
AVI56_RS03365	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVI56_RS03375	COG0281	malic enzyme
AVI56_RS03380	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AVI56_RS03385	COG0814	amino acid
AVI56_RS03410	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AVI56_RS03415	COG1678	Uncharacterized ACR, COG1678
AVI56_RS03435	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AVI56_RS03455	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AVI56_RS03460	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AVI56_RS03465	COG0189	ligase activity
AVI56_RS03475	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AVI56_RS03495	COG4221	oxidoreductase activity
AVI56_RS03540	COG3385	transposase activity
AVI56_RS03580	COG3385	transposase activity
AVI56_RS03605	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AVI56_RS03615	COG0109	protoheme IX farnesyltransferase activity
AVI56_RS03620	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AVI56_RS03640	COG2814	Major facilitator Superfamily
AVI56_RS03655	COG2867	negative regulation of translational initiation
AVI56_RS03655	COG2226	methyltransferase
AVI56_RS03665	COG0517	IMP dehydrogenase activity
AVI56_RS03665	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AVI56_RS03680	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS03690	COG3385	transposase activity
AVI56_RS03715	COG0489	protein tyrosine kinase activity
AVI56_RS03745	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS03770	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AVI56_RS03775	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AVI56_RS03785	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AVI56_RS03790	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AVI56_RS03795	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AVI56_RS03805	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AVI56_RS03815	COG0356	it plays a direct role in the translocation of protons across the membrane
AVI56_RS03825	COG1475	DNA binding
AVI56_RS03830	COG1192	Involved in chromosome partitioning
AVI56_RS03845	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AVI56_RS03850	COG0706	membrane insertase activity
AVI56_RS03855	COG0594	ribonuclease P activity
AVI56_RS03860	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AVI56_RS03865	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AVI56_RS03870	COG0592	DNA-directed DNA polymerase activity
AVI56_RS03880	COG0187	DNA topoisomerase II activity
AVI56_RS03900	COG2983	Belongs to the UPF0260 family
AVI56_RS03905	COG0275	rRNA processing
AVI56_RS03920	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AVI56_RS03925	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AVI56_RS03930	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AVI56_RS03935	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AVI56_RS03940	COG0772	Belongs to the SEDS family
AVI56_RS03945	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AVI56_RS03950	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AVI56_RS03955	COG1181	Belongs to the D-alanine--D-alanine ligase family
AVI56_RS03960	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AVI56_RS03970	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AVI56_RS03975	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AVI56_RS04015	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AVI56_RS04015	COG0456	acetyltransferase
AVI56_RS04030	COG3227	Zinc metalloprotease (Elastase)
AVI56_RS04040	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AVI56_RS04045	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AVI56_RS04045	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AVI56_RS04070	COG3385	transposase activity
AVI56_RS04080	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AVI56_RS04090	COG0793	Belongs to the peptidase S41A family
AVI56_RS04100	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AVI56_RS04125	COG3385	transposase activity
AVI56_RS04140	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS04160	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS04170	COG0408	coproporphyrinogen oxidase activity
AVI56_RS04175	COG0009	L-threonylcarbamoyladenylate synthase
AVI56_RS04185	COG2922	Belongs to the Smg family
AVI56_RS04190	COG0758	DNA mediated transformation
AVI56_RS04195	COG0242	peptide deformylase activity
AVI56_RS04200	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AVI56_RS04205	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AVI56_RS04210	COG0569	domain protein
AVI56_RS04215	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AVI56_RS04220	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AVI56_RS04225	COG2828	Protein conserved in bacteria
AVI56_RS04250	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AVI56_RS04255	COG1607	acyl-coa hydrolase
AVI56_RS04265	COG0752	glycyl-tRNA synthetase alpha subunit
AVI56_RS04305	COG3385	transposase activity
AVI56_RS04310	COG3385	transposase activity
AVI56_RS04320	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS04345	COG0450	alkyl hydroperoxide reductase
AVI56_RS04380	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AVI56_RS04380	COG0512	Glutamine amidotransferase of anthranilate synthase
AVI56_RS04385	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AVI56_RS04390	COG0134	indole-3-glycerol-phosphate synthase activity
AVI56_RS04400	COG0133	tryptophan synthase activity
AVI56_RS04410	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
AVI56_RS04415	COG0463	Glycosyl transferase, family 2
AVI56_RS04425	COG1166	arginine decarboxylase activity
AVI56_RS04430	COG0347	Belongs to the P(II) protein family
AVI56_RS04440	COG0606	chelatase, subunit chli
AVI56_RS04445	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AVI56_RS04460	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS04465	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AVI56_RS04500	COG3451	type IV secretory pathway VirB4
AVI56_RS04510	COG3504	Conjugal transfer protein
AVI56_RS04535	COG4962	Type ii secretion system protein e
AVI56_RS04540	COG0017	Asparaginyl-tRNA synthetase
AVI56_RS04545	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AVI56_RS04595	COG4796	Type ii and iii secretion system protein
AVI56_RS04600	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AVI56_RS04610	COG0583	DNA-binding transcription factor activity
AVI56_RS04615	COG2814	Major facilitator Superfamily
AVI56_RS04620	COG2271	Major facilitator Superfamily
AVI56_RS04625	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS04650	COG2988	succinylglutamate desuccinylase activity
AVI56_RS04660	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AVI56_RS04690	COG0668	transmembrane transport
AVI56_RS04700	COG0174	glutamine synthetase
AVI56_RS04705	COG0531	amino acid
AVI56_RS04720	COG0248	Ppx GppA phosphatase
AVI56_RS04740	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AVI56_RS04795	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AVI56_RS04805	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS04820	COG2801	Transposase and inactivated derivatives
AVI56_RS04840	COG1217	gtp-binding protein TYPA
AVI56_RS04860	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AVI56_RS04865	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AVI56_RS04870	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AVI56_RS04890	COG3385	transposase activity
AVI56_RS04915	COG1585	Membrane protein implicated in regulation of membrane protease activity
AVI56_RS04920	COG0330	HflC and HflK could
AVI56_RS04925	COG0708	Exodeoxyribonuclease III
AVI56_RS04930	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AVI56_RS04930	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AVI56_RS04935	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AVI56_RS04945	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AVI56_RS04950	COG0625	glutathione transferase activity
AVI56_RS04965	COG3186	Phenylalanine-4-hydroxylase
AVI56_RS04980	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS04995	COG0281	malic enzyme
AVI56_RS05000	COG0254	rRNA binding
AVI56_RS05010	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AVI56_RS05030	COG0494	nUDIX hydrolase
AVI56_RS05045	COG2363	Small membrane protein
AVI56_RS05060	COG1435	thymidine kinase activity
AVI56_RS05080	COG0149	triose-phosphate isomerase activity
AVI56_RS05085	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AVI56_RS05095	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AVI56_RS05100	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AVI56_RS05110	COG0649	NAD binding
AVI56_RS05115	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AVI56_RS05120	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AVI56_RS05125	COG1034	ATP synthesis coupled electron transport
AVI56_RS05125	COG1034	ATP synthesis coupled electron transport
AVI56_RS05130	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AVI56_RS05135	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AVI56_RS05140	COG0839	Belongs to the complex I subunit 6 family
AVI56_RS05145	COG0713	ATP synthesis coupled electron transport
AVI56_RS05160	COG1007	ATP synthesis coupled electron transport
AVI56_RS05175	COG0195	Participates in both transcription termination and antitermination
AVI56_RS05175	COG2251	uridine kinase activity
AVI56_RS05180	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AVI56_RS05185	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AVI56_RS05190	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AVI56_RS05195	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AVI56_RS05200	COG1185	polyribonucleotide nucleotidyltransferase activity
AVI56_RS05210	COG3243	poly(R)-hydroxyalkanoic acid synthase
AVI56_RS05230	COG1028	Short-chain dehydrogenase reductase Sdr
AVI56_RS05240	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AVI56_RS05245	COG0617	tRNA 3'-terminal CCA addition
AVI56_RS05250	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AVI56_RS05280	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AVI56_RS05285	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS05290	COG1028	Short-chain dehydrogenase reductase Sdr
AVI56_RS05310	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS05320	COG2853	Lipoprotein
AVI56_RS05335	COG1490	D-aminoacyl-tRNA deacylase activity
AVI56_RS05345	COG2066	Belongs to the glutaminase family
AVI56_RS05355	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AVI56_RS05360	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AVI56_RS05365	COG2867	negative regulation of translational initiation
AVI56_RS05370	COG2914	Belongs to the UPF0125 (RnfH) family
AVI56_RS05385	COG0735	belongs to the Fur family
AVI56_RS05395	COG0497	DNA recombination
AVI56_RS05400	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AVI56_RS05405	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AVI56_RS05410	COG0443	Heat shock 70 kDa protein
AVI56_RS05415	COG0484	heat shock protein binding
AVI56_RS05420	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AVI56_RS05430	COG0477	Major facilitator Superfamily
AVI56_RS05435	COG3130	regulation of translation
AVI56_RS05445	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AVI56_RS05450	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
AVI56_RS05455	COG0237	dephospho-CoA kinase activity
AVI56_RS05475	COG1459	type II secretion system
AVI56_RS05510	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AVI56_RS05520	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AVI56_RS05525	COG0081	regulation of translation
AVI56_RS05530	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AVI56_RS05535	COG0222	ribosome binding
AVI56_RS05540	COG0085	RNA polymerase activity
AVI56_RS05550	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AVI56_RS05555	COG0049	tRNA binding
AVI56_RS05560	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AVI56_RS05565	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AVI56_RS05570	COG0051	transcription antitermination factor activity, RNA binding
AVI56_RS05575	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AVI56_RS05580	COG0088	Forms part of the polypeptide exit tunnel
AVI56_RS05585	COG0089	rRNA binding
AVI56_RS05590	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AVI56_RS05595	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AVI56_RS05600	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AVI56_RS05605	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AVI56_RS05610	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AVI56_RS05615	COG0255	Belongs to the universal ribosomal protein uL29 family
AVI56_RS05620	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AVI56_RS05630	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AVI56_RS05640	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AVI56_RS05645	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AVI56_RS05650	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AVI56_RS05655	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AVI56_RS05660	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AVI56_RS05670	COG0200	Binds to the 23S rRNA
AVI56_RS05685	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AVI56_RS05690	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AVI56_RS05695	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AVI56_RS05700	COG0202	RNA polymerase activity
AVI56_RS05705	COG0203	ribosomal protein L17
AVI56_RS05710	COG2814	Major facilitator Superfamily
AVI56_RS05715	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AVI56_RS05740	COG3385	transposase activity
AVI56_RS05745	COG2801	Transposase and inactivated derivatives
AVI56_RS05750	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS05765	COG1253	flavin adenine dinucleotide binding
AVI56_RS05770	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AVI56_RS05775	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AVI56_RS05780	COG0180	Tryptophanyl-tRNA synthetase
AVI56_RS05800	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AVI56_RS05805	COG0018	arginyl-trna synthetase
AVI56_RS05820	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AVI56_RS05840	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AVI56_RS05865	COG0495	leucyl-tRNA aminoacylation
AVI56_RS05875	COG1466	dna polymerase III delta subunit
AVI56_RS05880	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AVI56_RS05890	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AVI56_RS05895	COG0768	penicillin binding
AVI56_RS05900	COG0772	Belongs to the SEDS family
AVI56_RS05905	COG2951	lytic endotransglycosylase activity
AVI56_RS05915	COG1686	Belongs to the peptidase S11 family
AVI56_RS05925	COG0321	lipoyl(octanoyl) transferase activity
AVI56_RS05930	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AVI56_RS05940	COG3385	transposase activity
AVI56_RS05975	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS05995	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AVI56_RS06000	COG0494	nUDIX hydrolase
AVI56_RS06020	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AVI56_RS06040	COG3079	Belongs to the UPF0149 family
AVI56_RS06045	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AVI56_RS06050	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AVI56_RS06065	COG0745	RESPONSE REGULATOR receiver
AVI56_RS06070	COG0776	regulation of translation
AVI56_RS06085	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AVI56_RS06095	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AVI56_RS06120	COG3385	transposase activity
AVI56_RS06130	COG0561	phosphatase activity
AVI56_RS06155	COG1028	Short-chain dehydrogenase reductase Sdr
AVI56_RS06170	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AVI56_RS06175	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
AVI56_RS06175	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AVI56_RS06200	COG1040	competence protein
AVI56_RS06205	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AVI56_RS06215	COG0596	Alpha beta hydrolase
AVI56_RS06230	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AVI56_RS06270	COG0156	8-amino-7-oxononanoate synthase activity
AVI56_RS06275	COG1063	alcohol dehydrogenase
AVI56_RS06280	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS06290	COG3385	transposase activity
AVI56_RS06305	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AVI56_RS06310	COG0586	Pfam SNARE associated Golgi protein
AVI56_RS06370	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AVI56_RS06485	COG3385	transposase activity
AVI56_RS06490	COG3385	transposase activity
AVI56_RS06510	COG0114	fumarate hydratase activity
AVI56_RS06535	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS06540	COG3385	transposase activity
AVI56_RS06560	COG2814	Major facilitator Superfamily
AVI56_RS06575	COG1392	Phosphate transport regulator
AVI56_RS06580	COG0306	phosphate transporter
AVI56_RS06600	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
AVI56_RS06605	COG0235	Class ii aldolase
AVI56_RS06610	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
AVI56_RS06625	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
AVI56_RS06630	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
AVI56_RS06640	COG3012	SEC-C Motif Domain Protein
AVI56_RS06650	COG3385	transposase activity
AVI56_RS06660	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS06675	COG3385	transposase activity
AVI56_RS06685	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AVI56_RS06690	COG1280	lysine exporter protein (LysE YggA)
AVI56_RS06710	COG4206	TonB-dependent receptor
AVI56_RS06720	COG1131	(ABC) transporter
AVI56_RS06730	COG3385	transposase activity
AVI56_RS06745	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AVI56_RS06750	COG0071	Belongs to the small heat shock protein (HSP20) family
AVI56_RS06760	COG3385	transposase activity
AVI56_RS06770	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS06790	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AVI56_RS06835	COG2805	Type II/IV secretion system protein
AVI56_RS06930	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS07030	COG0425	Belongs to the sulfur carrier protein TusA family
AVI56_RS07040	COG0835	chemotaxis
AVI56_RS07040	COG0784	Response regulator, receiver
AVI56_RS07050	COG0242	peptide deformylase activity
AVI56_RS07075	COG2217	Heavy metal translocating P-type atpase
AVI56_RS07080	COG2217	Heavy metal translocating P-type atpase
AVI56_RS07085	COG2217	Heavy metal translocating P-type atpase
AVI56_RS07115	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AVI56_RS07115	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AVI56_RS07125	COG0167	dihydroorotate dehydrogenase activity
AVI56_RS07140	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AVI56_RS07175	COG4166	transmembrane transport
AVI56_RS07185	COG3385	transposase activity
AVI56_RS07210	COG0328	RNA-DNA hybrid ribonuclease activity
AVI56_RS07230	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AVI56_RS07235	COG0601	transmembrane transport
AVI56_RS07240	COG3385	transposase activity
AVI56_RS07295	COG0745	RESPONSE REGULATOR receiver
AVI56_RS07305	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AVI56_RS07310	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AVI56_RS07315	COG2076	Multidrug Resistance protein
AVI56_RS07320	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AVI56_RS07325	COG0463	Glycosyl transferase, family 2
AVI56_RS07345	COG0019	diaminopimelate decarboxylase activity
AVI56_RS07350	COG0527	aspartate kinase activity
AVI56_RS07355	COG0747	negative chemotaxis
AVI56_RS07360	COG0601	transmembrane transport
AVI56_RS07365	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AVI56_RS07375	COG4608	Belongs to the ABC transporter superfamily
AVI56_RS07380	COG0724	RNA recognition motif
AVI56_RS07420	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS07430	COG0617	tRNA 3'-terminal CCA addition
AVI56_RS07435	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AVI56_RS07440	COG1702	phosphate starvation-inducible protein PhoH
AVI56_RS07450	COG4535	Mg2 and Co2 transporter CorC
AVI56_RS07455	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AVI56_RS07470	COG3385	transposase activity
AVI56_RS07480	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS07490	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AVI56_RS07495	COG2967	ApaG domain
AVI56_RS07500	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AVI56_RS07505	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AVI56_RS07510	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AVI56_RS07530	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AVI56_RS07545	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AVI56_RS07550	COG0512	Glutamine amidotransferase of anthranilate synthase
AVI56_RS07555	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
AVI56_RS07645	COG0784	Response regulator, receiver
AVI56_RS07645	COG0835	chemotaxis
AVI56_RS07655	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
AVI56_RS07670	COG1660	Displays ATPase and GTPase activities
AVI56_RS07685	COG1137	ATPase activity
AVI56_RS07700	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AVI56_RS07700	COG0517	IMP dehydrogenase activity
AVI56_RS07705	COG1127	ABC transporter
AVI56_RS07710	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AVI56_RS07715	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AVI56_RS07750	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AVI56_RS07780	COG3243	poly(R)-hydroxyalkanoic acid synthase
AVI56_RS07785	COG2823	Periplasmic or secreted lipoprotein
AVI56_RS07795	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AVI56_RS07800	COG0416	fatty acid biosynthetic process
AVI56_RS07805	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AVI56_RS07810	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AVI56_RS07815	COG1028	Short-chain dehydrogenase reductase Sdr
AVI56_RS07820	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVI56_RS07825	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AVI56_RS07830	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AVI56_RS07835	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AVI56_RS07840	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AVI56_RS07845	COG2963	transposase activity
AVI56_RS07860	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS07865	COG2801	Transposase and inactivated derivatives
AVI56_RS07875	COG3385	transposase activity
AVI56_RS07905	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS07935	COG2827	Endonuclease containing a URI domain
AVI56_RS07940	COG0247	lactate metabolic process
AVI56_RS07940	COG0277	FAD linked oxidase domain protein
AVI56_RS07960	COG3161	chorismate lyase activity
AVI56_RS07965	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AVI56_RS07970	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AVI56_RS07985	COG0859	PFAM glycosyl transferase family 9
AVI56_RS07995	COG1215	transferase activity, transferring glycosyl groups
AVI56_RS08000	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVI56_RS08005	COG1519	Transferase
AVI56_RS08010	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AVI56_RS08015	COG0509	glycine decarboxylation via glycine cleavage system
AVI56_RS08020	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AVI56_RS08035	COG3104	oligopeptide transport
AVI56_RS08040	COG2801	Transposase and inactivated derivatives
AVI56_RS08050	COG3104	oligopeptide transport
AVI56_RS08070	COG3385	transposase activity
AVI56_RS08090	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS08110	COG2226	methyltransferase
AVI56_RS08115	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AVI56_RS08125	COG0193	aminoacyl-tRNA hydrolase activity
AVI56_RS08130	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AVI56_RS08135	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AVI56_RS08155	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AVI56_RS08160	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AVI56_RS08165	COG2890	protein-(glutamine-N5) methyltransferase activity
AVI56_RS08170	COG2814	Major facilitator Superfamily
AVI56_RS08205	COG3385	transposase activity
AVI56_RS08240	COG2963	transposase activity
AVI56_RS08250	COG3385	transposase activity
AVI56_RS08260	COG1619	proteins homologs of microcin C7 resistance protein MccF
AVI56_RS08280	COG2076	Multidrug Resistance protein
AVI56_RS08285	COG0628	permease
AVI56_RS08295	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AVI56_RS08300	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AVI56_RS08320	COG2962	Rard protein
AVI56_RS08330	COG2197	response regulator
AVI56_RS08335	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AVI56_RS08335	COG1017	nitric oxide dioxygenase activity
AVI56_RS08340	COG1959	2 iron, 2 sulfur cluster binding
AVI56_RS08345	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AVI56_RS08350	COG2814	Major facilitator Superfamily
AVI56_RS08355	COG2971	BadF BadG BcrA BcrD
AVI56_RS08405	COG0742	ribosomal rna small subunit methyltransferase
AVI56_RS08440	COG2095	MarC family integral membrane protein
AVI56_RS08445	COG2920	part of a sulfur-relay system
AVI56_RS08460	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AVI56_RS08465	COG0670	Belongs to the BI1 family
AVI56_RS08515	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AVI56_RS08520	COG2878	Part of a membrane complex involved in electron transport
AVI56_RS08525	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AVI56_RS08525	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AVI56_RS08530	COG2814	Major facilitator Superfamily
AVI56_RS08560	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AVI56_RS08565	COG0542	response to heat
AVI56_RS08575	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AVI56_RS08580	COG0540	Belongs to the ATCase OTCase family
AVI56_RS08610	COG3385	transposase activity
AVI56_RS08615	COG0798	PFAM Bile acid sodium symporter
AVI56_RS08640	COG0402	S-adenosylhomocysteine deaminase activity
AVI56_RS08645	COG3676	manually curated
AVI56_RS08660	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AVI56_RS08665	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AVI56_RS08680	COG1555	photosystem II stabilization
AVI56_RS08685	COG0346	lactoylglutathione lyase activity
AVI56_RS08695	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS08735	COG0488	(ABC) transporter
AVI56_RS08740	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AVI56_RS08745	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AVI56_RS08750	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AVI56_RS08750	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AVI56_RS08765	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AVI56_RS08775	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AVI56_RS08815	COG0477	Major facilitator Superfamily
AVI56_RS08830	COG3385	transposase activity
AVI56_RS08845	COG3385	transposase activity
AVI56_RS08850	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS08855	COG0477	Major facilitator Superfamily
AVI56_RS08880	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AVI56_RS08885	COG1758	RNA polymerase activity
AVI56_RS08890	COG0194	GDP metabolic process
AVI56_RS08895	COG1561	YicC-like family, N-terminal region
AVI56_RS08900	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AVI56_RS08905	COG1607	acyl-coa hydrolase
AVI56_RS08910	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AVI56_RS08920	COG1012	belongs to the aldehyde dehydrogenase family
AVI56_RS08925	COG3724	N-succinylarginine dihydrolase activity
AVI56_RS08975	COG2801	Transposase and inactivated derivatives
AVI56_RS08990	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AVI56_RS08995	COG1194	a g-specific adenine glycosylase
AVI56_RS09005	COG4178	(ABC) transporter
AVI56_RS09015	COG1011	Hydrolase
AVI56_RS09020	COG1940	carbohydrate kinase activity
AVI56_RS09030	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AVI56_RS09030	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AVI56_RS09045	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AVI56_RS09060	COG1994	Peptidase M50
AVI56_RS09070	COG2719	SpoVR family
AVI56_RS09080	COG2766	serine protein kinase
AVI56_RS09090	COG2902	Dehydrogenase
AVI56_RS09095	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AVI56_RS09110	COG0424	maF-like protein
AVI56_RS09130	COG0745	RESPONSE REGULATOR receiver
AVI56_RS09135	COG2205	protein histidine kinase activity
AVI56_RS09165	COG2801	Transposase and inactivated derivatives
AVI56_RS09180	COG2166	iron-sulfur cluster assembly
AVI56_RS09190	COG2860	membrane
AVI56_RS09210	COG3385	transposase activity
AVI56_RS09215	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS09230	COG0835	chemotaxis
AVI56_RS09230	COG0784	Response regulator, receiver
AVI56_RS09285	COG1131	(ABC) transporter
AVI56_RS09290	COG0189	ligase activity
AVI56_RS09365	COG2801	Transposase and inactivated derivatives
AVI56_RS09370	COG3385	transposase activity
AVI56_RS09400	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS09430	COG0840	transmembrane signaling receptor activity
AVI56_RS09465	COG0604	alcohol dehydrogenase
AVI56_RS09470	COG0714	Associated with various cellular activities
AVI56_RS09490	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS09495	COG2304	oxidoreductase activity
AVI56_RS09510	COG1366	Belongs to the anti-sigma-factor antagonist family
AVI56_RS09560	COG2801	Transposase and inactivated derivatives
AVI56_RS09575	COG2801	Transposase and inactivated derivatives
AVI56_RS09590	COG2963	transposase activity
AVI56_RS09595	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS09615	COG3385	transposase activity
AVI56_RS09630	COG2801	Transposase and inactivated derivatives
AVI56_RS09665	COG1469	GTP cyclohydrolase I activity
AVI56_RS09670	COG0142	geranyltranstransferase activity
AVI56_RS09675	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AVI56_RS09680	COG1360	Flagellar Motor Protein
AVI56_RS09715	COG2801	Transposase and inactivated derivatives
AVI56_RS09740	COG3385	transposase activity
AVI56_RS09760	COG2814	Major facilitator Superfamily
AVI56_RS09770	COG1074	ATP-dependent DNA helicase activity
AVI56_RS09785	COG3385	transposase activity
AVI56_RS09820	COG2801	Transposase and inactivated derivatives
AVI56_RS09825	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS09850	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
AVI56_RS09855	COG0077	Prephenate dehydratase
AVI56_RS09855	COG1605	Chorismate mutase
AVI56_RS09870	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AVI56_RS09875	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AVI56_RS09880	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AVI56_RS09885	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AVI56_RS09900	COG0360	Binds together with S18 to 16S ribosomal RNA
AVI56_RS09905	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AVI56_RS09910	COG0359	binds to the 23S rRNA
AVI56_RS09915	COG0305	Participates in initiation and elongation during chromosome replication
AVI56_RS09935	COG4520	surface antigen
AVI56_RS09965	COG1199	ATP-dependent helicase activity
AVI56_RS09970	COG0583	DNA-binding transcription factor activity
AVI56_RS09980	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10015	COG2801	Transposase and inactivated derivatives
AVI56_RS10020	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10055	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AVI56_RS10070	COG1595	DNA-templated transcription, initiation
AVI56_RS10080	COG0681	Belongs to the peptidase S26 family
AVI56_RS10100	COG1381	Involved in DNA repair and RecF pathway recombination
AVI56_RS10105	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AVI56_RS10110	COG0736	holo-[acyl-carrier-protein] synthase activity
AVI56_RS10115	COG2066	Belongs to the glutaminase family
AVI56_RS10120	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AVI56_RS10125	COG1393	Belongs to the ArsC family
AVI56_RS10140	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10175	COG2801	Transposase and inactivated derivatives
AVI56_RS10200	COG0531	amino acid
AVI56_RS10205	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AVI56_RS10220	COG2022	thiamine diphosphate biosynthetic process
AVI56_RS10230	COG3385	transposase activity
AVI56_RS10240	COG0482	sulfurtransferase activity
AVI56_RS10245	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AVI56_RS10275	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AVI56_RS10280	COG1749	Flagellar hook protein flgE
AVI56_RS10285	COG4787	bacterial-type flagellum-dependent cell motility
AVI56_RS10290	COG4786	Flagellar basal body rod
AVI56_RS10300	COG1706	bacterial-type flagellum-dependent cell motility
AVI56_RS10310	COG1256	bacterial-type flagellum assembly
AVI56_RS10310	COG4786	Flagellar basal body rod
AVI56_RS10335	COG3385	transposase activity
AVI56_RS10370	COG0531	amino acid
AVI56_RS10410	COG3385	transposase activity
AVI56_RS10430	COG2801	Transposase and inactivated derivatives
AVI56_RS10445	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AVI56_RS10480	COG4221	oxidoreductase activity
AVI56_RS10485	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10490	COG4221	oxidoreductase activity
AVI56_RS10545	COG0564	pseudouridine synthase activity
AVI56_RS10555	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10585	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10620	COG3385	transposase activity
AVI56_RS10640	COG1968	undecaprenyl-diphosphatase activity
AVI56_RS10650	COG0717	Belongs to the dCTP deaminase family
AVI56_RS10670	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10685	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AVI56_RS10695	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AVI56_RS10700	COG2957	Belongs to the agmatine deiminase family
AVI56_RS10735	COG2963	transposase activity
AVI56_RS10760	COG1250	3-hydroxyacyl-CoA dehydrogenase
AVI56_RS10760	COG1024	Enoyl-CoA hydratase
AVI56_RS10765	COG0183	Belongs to the thiolase family
AVI56_RS10770	COG1960	acyl-CoA dehydrogenase activity
AVI56_RS10785	COG3501	Rhs element vgr protein
AVI56_RS10795	COG1024	Enoyl-CoA hydratase
AVI56_RS10805	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AVI56_RS10810	COG2081	HI0933 family
AVI56_RS10815	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AVI56_RS10830	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AVI56_RS10850	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10865	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AVI56_RS10870	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AVI56_RS10875	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AVI56_RS10900	COG3385	transposase activity
AVI56_RS10910	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS10925	COG2801	Transposase and inactivated derivatives
AVI56_RS11055	COG1376	ErfK ybiS ycfS ynhG family protein
AVI56_RS11070	COG0729	surface antigen
AVI56_RS11080	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AVI56_RS11085	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AVI56_RS11090	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AVI56_RS11115	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AVI56_RS11115	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
AVI56_RS11150	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
AVI56_RS11150	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AVI56_RS11170	COG0784	Response regulator, receiver
AVI56_RS11170	COG0835	chemotaxis
AVI56_RS11175	COG2963	transposase activity
AVI56_RS11195	COG0604	alcohol dehydrogenase
AVI56_RS11195	COG1028	Short-chain dehydrogenase reductase Sdr
AVI56_RS11195	COG3321	synthase
AVI56_RS11210	COG0604	alcohol dehydrogenase
AVI56_RS11210	COG3321	synthase
AVI56_RS11210	COG1028	Short-chain dehydrogenase reductase Sdr
AVI56_RS11215	COG2070	2-Nitropropane dioxygenase
AVI56_RS11230	COG1643	Atp-dependent helicase
AVI56_RS11240	COG0596	Alpha beta hydrolase
AVI56_RS11245	COG0835	chemotaxis
AVI56_RS11245	COG0784	Response regulator, receiver
AVI56_RS11250	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AVI56_RS11255	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AVI56_RS11285	COG2801	Transposase and inactivated derivatives
AVI56_RS11290	COG2801	Transposase and inactivated derivatives
AVI56_RS11300	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AVI56_RS11315	COG3385	transposase activity
AVI56_RS11355	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AVI56_RS11395	COG1294	oxidase, subunit
AVI56_RS11405	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS11420	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AVI56_RS11420	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AVI56_RS11425	COG3385	transposase activity
AVI56_RS11430	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AVI56_RS11430	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AVI56_RS11440	COG2801	Transposase and inactivated derivatives
AVI56_RS11485	COG0590	tRNA wobble adenosine to inosine editing
AVI56_RS11540	COG0513	Belongs to the DEAD box helicase family
AVI56_RS11555	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS11565	COG0741	lytic transglycosylase activity
AVI56_RS11575	COG1054	Belongs to the UPF0176 family
AVI56_RS11580	COG0659	secondary active sulfate transmembrane transporter activity
AVI56_RS11590	COG3064	Membrane
AVI56_RS11590	COG4991	sh3 domain protein
AVI56_RS11590	COG0515	serine threonine protein kinase
AVI56_RS11625	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS11640	COG3676	manually curated
AVI56_RS11655	COG2801	Transposase and inactivated derivatives
AVI56_RS11685	COG2814	Major facilitator Superfamily
AVI56_RS11690	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AVI56_RS11695	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AVI56_RS11715	COG2815	serine threonine protein kinase
AVI56_RS11715	COG0515	serine threonine protein kinase
AVI56_RS11730	COG1280	lysine exporter protein (LysE YggA)
AVI56_RS11750	COG2095	MarC family integral membrane protein
AVI56_RS11755	COG2866	Carboxypeptidase
AVI56_RS11760	COG0513	Belongs to the DEAD box helicase family
AVI56_RS11775	COG4991	sh3 domain protein
AVI56_RS11775	COG3064	Membrane
AVI56_RS11775	COG0515	serine threonine protein kinase
AVI56_RS11780	COG0583	DNA-binding transcription factor activity
AVI56_RS11795	COG2333	competence protein COMEC
AVI56_RS11795	COG0658	competence protein
AVI56_RS11800	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS11825	COG2801	Transposase and inactivated derivatives
AVI56_RS11840	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS11855	COG0811	peptide transport
AVI56_RS11860	COG0848	biopolymer transport protein
AVI56_RS11865	COG1132	(ABC) transporter
AVI56_RS11870	COG1663	tetraacyldisaccharide 4'-kinase activity
AVI56_RS11880	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AVI56_RS11890	COG0740	serine-type endopeptidase activity
AVI56_RS11895	COG1115	amino acid carrier protein
AVI56_RS11900	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS11905	COG2801	Transposase and inactivated derivatives
AVI56_RS11925	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AVI56_RS11925	COG0475	glutathione-regulated potassium exporter activity
AVI56_RS11935	COG3177	Filamentation induced by cAMP protein fic
AVI56_RS11940	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS11965	COG2801	Transposase and inactivated derivatives
AVI56_RS12000	COG2801	Transposase and inactivated derivatives
AVI56_RS12025	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AVI56_RS12035	COG3385	transposase activity
AVI56_RS12075	COG0477	Major facilitator Superfamily
AVI56_RS12080	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AVI56_RS12100	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS12125	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AVI56_RS12130	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AVI56_RS12170	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS12185	COG0686	Belongs to the AlaDH PNT family
AVI56_RS12190	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS12195	COG0387	Pfam Sodium calcium exchanger
AVI56_RS12250	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AVI56_RS12255	COG0572	uridine kinase
AVI56_RS12270	COG2963	transposase activity
AVI56_RS12280	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS12295	COG0316	Belongs to the HesB IscA family
AVI56_RS12300	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AVI56_RS12305	COG0719	Fe-S assembly protein
AVI56_RS12310	COG0396	ATPase activity
AVI56_RS12320	COG1959	2 iron, 2 sulfur cluster binding
AVI56_RS12340	COG0784	Response regulator, receiver
AVI56_RS12340	COG2198	Histidine kinase
AVI56_RS12340	COG0643	Histidine kinase
AVI56_RS12345	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AVI56_RS12370	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AVI56_RS12385	COG1987	bacterial-type flagellum assembly
AVI56_RS12420	COG0741	lytic transglycosylase activity
AVI56_RS12420	COG1388	LysM domain
AVI56_RS12430	COG0488	(ABC) transporter
AVI56_RS12440	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
AVI56_RS12450	COG0739	heme binding
AVI56_RS12485	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AVI56_RS12490	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AVI56_RS12495	COG2890	protein-(glutamine-N5) methyltransferase activity
AVI56_RS12510	COG0814	amino acid
AVI56_RS12515	COG2814	Major facilitator Superfamily
AVI56_RS12530	COG3104	oligopeptide transport
AVI56_RS12585	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AVI56_RS12590	COG1845	cytochrome c oxidase, subunit III
AVI56_RS12595	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AVI56_RS12600	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AVI56_RS12605	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS12665	COG3385	transposase activity
AVI56_RS12695	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AVI56_RS12700	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AVI56_RS12705	COG0531	amino acid
AVI56_RS12710	COG0585	pseudouridine synthase activity
AVI56_RS12715	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AVI56_RS12720	COG0148	phosphopyruvate hydratase activity
AVI56_RS12725	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AVI56_RS12730	COG0504	CTP synthase activity
AVI56_RS12735	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AVI56_RS12740	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AVI56_RS12755	COG3385	transposase activity
AVI56_RS12795	COG2801	Transposase and inactivated derivatives
AVI56_RS12805	COG3385	transposase activity
AVI56_RS12830	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS12835	COG2801	Transposase and inactivated derivatives
AVI56_RS12855	COG2801	Transposase and inactivated derivatives
AVI56_RS12885	COG0335	large ribosomal subunit rRNA binding
AVI56_RS12890	COG0336	Belongs to the RNA methyltransferase TrmD family
AVI56_RS12895	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AVI56_RS12905	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AVI56_RS12915	COG0446	pyridine nucleotide-disulphide oxidoreductase
AVI56_RS12915	COG1902	pentaerythritol trinitrate reductase activity
AVI56_RS12930	COG3385	transposase activity
AVI56_RS12950	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
AVI56_RS12970	COG0811	peptide transport
AVI56_RS12975	COG4772	TonB-dependent receptor
AVI56_RS12980	COG1181	Belongs to the D-alanine--D-alanine ligase family
AVI56_RS12995	COG2814	Major facilitator Superfamily
AVI56_RS13010	COG0019	diaminopimelate decarboxylase activity
AVI56_RS13015	COG1120	ATPase activity
AVI56_RS13040	COG2801	Transposase and inactivated derivatives
AVI56_RS13055	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS13070	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AVI56_RS13075	COG0557	exoribonuclease II activity
AVI56_RS13080	COG2252	PERMEase
AVI56_RS13085	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AVI56_RS13090	COG0330	HflC and HflK could
AVI56_RS13095	COG0330	HflC and HflK could
AVI56_RS13100	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AVI56_RS13105	COG1923	regulation of RNA biosynthetic process
AVI56_RS13110	COG2271	Major facilitator Superfamily
AVI56_RS13115	COG0584	glycerophosphoryl diester phosphodiesterase
AVI56_RS13120	COG0531	amino acid
AVI56_RS13155	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
AVI56_RS13160	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AVI56_RS13170	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AVI56_RS13180	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AVI56_RS13195	COG0405	Gamma-glutamyltransferase
AVI56_RS13210	COG1286	toxin biosynthetic process
AVI56_RS13215	COG0285	dihydrofolate synthase activity
AVI56_RS13220	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AVI56_RS13225	COG0101	tRNA pseudouridine synthase activity
AVI56_RS13235	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AVI56_RS13245	COG0488	(ABC) transporter
AVI56_RS13255	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS13265	COG3385	transposase activity
AVI56_RS13280	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS13295	COG3385	transposase activity
AVI56_RS13305	COG2801	Transposase and inactivated derivatives
AVI56_RS13310	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
AVI56_RS13315	COG0753	catalase activity
AVI56_RS13325	COG0783	Belongs to the Dps family
AVI56_RS13335	COG0802	atpase or kinase
AVI56_RS13345	COG1162	GTPase activity
AVI56_RS13350	COG0688	phosphatidylethanolamine metabolic process
AVI56_RS13355	COG1671	Belongs to the UPF0178 family
AVI56_RS13360	COG0730	response to heat
AVI56_RS13390	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AVI56_RS13405	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
AVI56_RS13435	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AVI56_RS13435	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AVI56_RS13440	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AVI56_RS13440	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AVI56_RS13450	COG1294	oxidase, subunit
AVI56_RS13455	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
AVI56_RS13460	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
AVI56_RS13560	COG2805	Type II/IV secretion system protein
AVI56_RS13600	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AVI56_RS13610	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AVI56_RS13615	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AVI56_RS13630	COG3655	Transcriptional regulator
AVI56_RS13645	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AVI56_RS13645	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AVI56_RS13685	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS13695	COG3385	transposase activity
AVI56_RS13710	COG2801	Transposase and inactivated derivatives
AVI56_RS13740	COG3385	transposase activity
AVI56_RS13760	COG3385	transposase activity
AVI56_RS13765	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS13775	COG0488	(ABC) transporter
AVI56_RS13785	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AVI56_RS13785	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AVI56_RS13835	COG0326	Molecular chaperone. Has ATPase activity
AVI56_RS13850	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AVI56_RS13855	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AVI56_RS13860	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AVI56_RS13895	COG3385	transposase activity
AVI56_RS13925	COG0708	Exodeoxyribonuclease III
AVI56_RS13930	COG0733	neurotransmitter:sodium symporter activity
AVI56_RS13945	COG0850	regulation of cytokinetic process
AVI56_RS13950	COG2894	cell division
AVI56_RS13955	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AVI56_RS14030	COG1090	epimerase
AVI56_RS14040	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AVI56_RS14045	COG1876	peptidase activity
AVI56_RS14050	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AVI56_RS14065	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AVI56_RS14070	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AVI56_RS14075	COG1862	Preprotein translocase
AVI56_RS14080	COG0343	queuine tRNA-ribosyltransferase activity
AVI56_RS14085	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AVI56_RS14095	COG0795	lipopolysaccharide-transporting ATPase activity
AVI56_RS14100	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AVI56_RS14110	COG0525	valine-tRNA ligase activity
AVI56_RS14115	COG2814	Major facilitator Superfamily
AVI56_RS14120	COG0288	reversible hydration of carbon dioxide
AVI56_RS14130	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS14150	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS14170	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AVI56_RS14205	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
AVI56_RS14210	COG1335	isochorismatase
AVI56_RS14215	COG0564	pseudouridine synthase activity
AVI56_RS14225	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AVI56_RS14250	COG1181	Belongs to the D-alanine--D-alanine ligase family
AVI56_RS14355	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AVI56_RS14360	COG2814	Major facilitator Superfamily
AVI56_RS14365	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AVI56_RS14370	COG2801	Transposase and inactivated derivatives
AVI56_RS14375	COG2801	Transposase and inactivated derivatives
AVI56_RS14390	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AVI56_RS14400	COG0460	homoserine dehydrogenase
AVI56_RS14400	COG0527	aspartate kinase activity
AVI56_RS14410	COG0318	PFAM AMP-dependent synthetase and ligase
AVI56_RS14415	COG0598	Magnesium transport protein CorA
AVI56_RS14420	COG0668	transmembrane transport
AVI56_RS14425	COG1472	Belongs to the glycosyl hydrolase 3 family
AVI56_RS14445	COG0183	Belongs to the thiolase family
AVI56_RS14460	COG2801	Transposase and inactivated derivatives
AVI56_RS14475	COG0784	Response regulator, receiver
AVI56_RS14475	COG2205	protein histidine kinase activity
AVI56_RS14475	COG5002	protein histidine kinase activity
AVI56_RS14485	COG1012	belongs to the aldehyde dehydrogenase family
AVI56_RS14490	COG3385	transposase activity
AVI56_RS14570	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AVI56_RS14575	COG0616	signal peptide processing
AVI56_RS14580	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AVI56_RS14600	COG2204	response regulator
AVI56_RS14605	COG3385	transposase activity
AVI56_RS14645	COG3385	transposase activity
AVI56_RS14670	COG3385	transposase activity
AVI56_RS14675	COG0442	prolyl-tRNA aminoacylation
AVI56_RS14685	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS14695	COG0842	Transport permease protein
AVI56_RS14700	COG1131	(ABC) transporter
AVI56_RS14705	COG1570	exodeoxyribonuclease VII activity
AVI56_RS14725	COG0602	queuosine metabolic process
AVI56_RS14730	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
AVI56_RS14740	COG0823	Involved in the tonB-independent uptake of proteins
AVI56_RS14755	COG0811	peptide transport
AVI56_RS14765	COG0632	four-way junction helicase activity
AVI56_RS14770	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AVI56_RS14775	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AVI56_RS14780	COG2918	glutathione biosynthetic process
AVI56_RS14790	COG1530	ribonuclease E activity
AVI56_RS14800	COG2201	protein-glutamate methylesterase activity
AVI56_RS14835	COG0835	chemotaxis
AVI56_RS14845	COG1192	Involved in chromosome partitioning
AVI56_RS14860	COG1160	GTP binding
AVI56_RS14865	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AVI56_RS14875	COG0124	histidyl-tRNA synthetase
AVI56_RS14895	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AVI56_RS14900	COG0105	UTP biosynthetic process
AVI56_RS14910	COG1104	cysteine desulfurase activity
AVI56_RS14915	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AVI56_RS14930	COG1674	ftsk spoiiie
AVI56_RS14935	COG0492	ferredoxin-NADP+ reductase activity
AVI56_RS14945	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS14955	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AVI56_RS14960	COG0542	response to heat
AVI56_RS14965	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AVI56_RS14970	COG1278	Cold shock
AVI56_RS14985	COG2223	nitrite transmembrane transporter activity
AVI56_RS14990	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVI56_RS14995	COG0563	adenylate kinase activity
AVI56_RS15005	COG3956	TIGRFAM MazG family protein
AVI56_RS15010	COG3956	TIGRFAM MazG family protein
AVI56_RS15020	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AVI56_RS15025	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AVI56_RS15045	COG3385	transposase activity
AVI56_RS15070	COG2986	histidine ammonia-lyase
AVI56_RS15080	COG1228	amidohydrolase
AVI56_RS15090	COG0589	response to stress
AVI56_RS15095	COG0259	pyridoxamine-phosphate oxidase activity
AVI56_RS15115	COG1621	beta-fructofuranosidase activity
AVI56_RS15135	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS15140	COG3385	transposase activity
AVI56_RS15160	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AVI56_RS15165	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AVI56_RS15170	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AVI56_RS15175	COG1610	YqeY-like protein
AVI56_RS15180	COG0358	DNA primase activity
AVI56_RS15210	COG2801	Transposase and inactivated derivatives
AVI56_RS15245	COG3385	transposase activity
AVI56_RS15305	COG2801	Transposase and inactivated derivatives
AVI56_RS15310	COG0531	amino acid
AVI56_RS15315	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS15320	COG0531	amino acid
AVI56_RS15325	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AVI56_RS15340	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AVI56_RS15355	COG3385	transposase activity
AVI56_RS15380	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS15405	COG0500	methyltransferase
AVI56_RS15415	COG0450	alkyl hydroperoxide reductase
AVI56_RS15420	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AVI56_RS15430	COG4948	Mandelate Racemase Muconate Lactonizing
AVI56_RS15450	COG3385	transposase activity
AVI56_RS15485	COG1546	Belongs to the CinA family
AVI56_RS15485	COG1058	Belongs to the CinA family
AVI56_RS15505	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AVI56_RS15535	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS15540	COG3385	transposase activity
AVI56_RS15545	COG3104	oligopeptide transport
AVI56_RS15560	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS15575	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AVI56_RS15580	COG4988	ABC transporter
AVI56_RS15585	COG3150	esterase
AVI56_RS15590	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AVI56_RS15595	COG1538	Outer membrane efflux protein
AVI56_RS15600	COG0039	L-malate dehydrogenase activity
AVI56_RS15610	COG3385	transposase activity
AVI56_RS15615	COG0494	nUDIX hydrolase
AVI56_RS15620	COG0776	regulation of translation
AVI56_RS15665	COG3385	transposase activity
AVI56_RS15675	COG3385	transposase activity
AVI56_RS15690	COG0187	DNA topoisomerase II activity
AVI56_RS15695	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS15740	COG2801	Transposase and inactivated derivatives
AVI56_RS15745	COG3385	transposase activity
AVI56_RS15775	COG1686	Belongs to the peptidase S11 family
AVI56_RS15785	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AVI56_RS15790	COG2274	protein secretion by the type I secretion system
AVI56_RS15795	COG2274	protein secretion by the type I secretion system
AVI56_RS15800	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AVI56_RS15815	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AVI56_RS15820	COG1560	Kdo2-lipid A biosynthetic process
AVI56_RS15835	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AVI56_RS15840	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AVI56_RS15845	COG0740	serine-type endopeptidase activity
AVI56_RS15850	COG0544	peptidyl-prolyl cis-trans isomerase activity
AVI56_RS15865	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AVI56_RS15875	COG0626	cystathionine gamma-synthase activity
AVI56_RS15885	COG0235	Class ii aldolase
AVI56_RS15890	COG0477	Major facilitator Superfamily
AVI56_RS15900	COG0656	L-ascorbic acid biosynthetic process
AVI56_RS15920	COG3385	transposase activity
AVI56_RS15935	COG2801	Transposase and inactivated derivatives
AVI56_RS16010	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS16040	COG0322	excinuclease ABC activity
AVI56_RS16045	COG2197	response regulator
AVI56_RS16055	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AVI56_RS16060	COG1538	Outer membrane efflux protein
AVI56_RS16065	COG2814	Major facilitator Superfamily
AVI56_RS16070	COG1566	PFAM secretion protein HlyD family protein
AVI56_RS16080	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AVI56_RS16105	COG0351	phosphomethylpyrimidine kinase
AVI56_RS16190	COG3385	transposase activity
AVI56_RS16205	COG2801	Transposase and inactivated derivatives
AVI56_RS16225	COG3385	transposase activity
AVI56_RS16240	COG2223	nitrite transmembrane transporter activity
AVI56_RS16275	COG2826	transposase and inactivated derivatives, IS30 family
AVI56_RS16280	COG3385	transposase activity
AVI56_RS16285	COG3385	transposase activity
AVI56_RS16300	COG3385	transposase activity
AVI56_RS16305	COG0659	secondary active sulfate transmembrane transporter activity
AVI56_RS16340	COG0587	DNA-directed DNA polymerase activity
AVI56_RS16640	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AVI56_RS16950	COG0166	Belongs to the GPI family
AVI56_RS16955	COG0166	Belongs to the GPI family
AVI56_RS17845	COG0659	secondary active sulfate transmembrane transporter activity
AVI56_RS17865	COG0825	malonyl-CoA metabolic process
AVI56_RS17915	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AVI56_RS17940	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AVI56_RS18085	COG0587	DNA-directed DNA polymerase activity