locus-tag class description CL55_RS00005 IPR010921 Trp repressor/replication initiator CL55_RS00005 IPR003593 AAA+ ATPase domain CL55_RS00005 IPR001957 Chromosomal replication control, initiator DnaA CL55_RS00005 IPR020591 Chromosomal replication control, initiator DnaA-like CL55_RS00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site CL55_RS00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal CL55_RS00005 IPR013317 Chromosomal replication initiator protein DnaA CL55_RS00005 IPR024633 DnaA N-terminal domain CL55_RS00005 IPR038454 DnaA, N-terminal domain superfamily CL55_RS00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00010 IPR022637 DNA polymerase III, beta sliding clamp, central CL55_RS00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal CL55_RS00010 IPR001001 DNA polymerase III, beta sliding clamp CL55_RS00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal CL55_RS00015 IPR018522 DNA topoisomerase, type IIA, conserved site CL55_RS00015 IPR034160 DNA gyrase subunit B, TOPRIM domain CL55_RS00015 IPR006171 TOPRIM domain CL55_RS00015 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CL55_RS00015 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CL55_RS00015 IPR002288 DNA gyrase B subunit, C-terminal CL55_RS00015 IPR011557 DNA gyrase, subunit B CL55_RS00015 IPR041423 DNA gyrase subunit B insert domain CL55_RS00015 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS00015 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CL55_RS00015 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS00015 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS00015 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS00015 IPR001241 DNA topoisomerase, type IIA CL55_RS00030 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00030 IPR003439 ABC transporter-like CL55_RS00030 IPR003593 AAA+ ATPase domain CL55_RS00030 IPR017871 ABC transporter, conserved site CL55_RS00030 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CL55_RS00035 IPR017871 ABC transporter, conserved site CL55_RS00035 IPR003593 AAA+ ATPase domain CL55_RS00035 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein CL55_RS00035 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00035 IPR003439 ABC transporter-like CL55_RS00055 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS00055 IPR020595 MnmG-related, conserved site CL55_RS00055 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CL55_RS00055 IPR026904 GidA associated domain 3 CL55_RS00055 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG CL55_RS00060 IPR003682 rRNA small subunit methyltransferase G CL55_RS00060 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS00065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00065 IPR025669 AAA domain CL55_RS00070 IPR003115 ParB/Sulfiredoxin CL55_RS00070 IPR036086 ParB/Sulfiredoxin superfamily CL55_RS00070 IPR041468 ParB/Spo0J, HTH domain CL55_RS00070 IPR004437 ParB/RepB/Spo0J partition protein CL55_RS00080 IPR023011 ATP synthase, F0 complex, subunit A, active site CL55_RS00080 IPR000568 ATP synthase, F0 complex, subunit A CL55_RS00080 IPR035908 ATP synthase, F0 complex, subunit A superfamily CL55_RS00085 IPR002379 V-ATPase proteolipid subunit C-like domain CL55_RS00085 IPR038662 F1F0 ATP synthase subunit C superfamily CL55_RS00085 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site CL55_RS00085 IPR000454 ATP synthase, F0 complex, subunit C CL55_RS00085 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast CL55_RS00085 IPR035921 F/V-ATP synthase subunit C superfamily CL55_RS00090 IPR005864 ATP synthase, F0 complex, subunit b, bacterial CL55_RS00090 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast CL55_RS00090 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CL55_RS00095 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily CL55_RS00095 IPR000711 ATPase, OSCP/delta subunit CL55_RS00100 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain CL55_RS00100 IPR005294 ATP synthase, F1 complex, alpha subunit CL55_RS00100 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CL55_RS00100 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CL55_RS00100 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CL55_RS00100 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily CL55_RS00100 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00100 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CL55_RS00100 IPR000793 ATP synthase, alpha subunit, C-terminal CL55_RS00100 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CL55_RS00105 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site CL55_RS00105 IPR000131 ATP synthase, F1 complex, gamma subunit CL55_RS00105 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily CL55_RS00110 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00110 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal CL55_RS00110 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CL55_RS00110 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CL55_RS00110 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CL55_RS00110 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CL55_RS00110 IPR005722 ATP synthase, F1 complex, beta subunit CL55_RS00110 IPR003593 AAA+ ATPase domain CL55_RS00115 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal CL55_RS00115 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit CL55_RS00115 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal CL55_RS00115 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain CL55_RS00115 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily CL55_RS00120 IPR006361 Uroporphyrinogen decarboxylase HemE CL55_RS00120 IPR038071 UROD/MetE-like superfamily CL55_RS00120 IPR000257 Uroporphyrinogen decarboxylase (URO-D) CL55_RS00125 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain CL55_RS00125 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily CL55_RS00125 IPR005259 Primosomal protein N' CL55_RS00125 IPR041236 Primosomal protein N, C-terminal domain CL55_RS00125 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00125 IPR001650 Helicase, C-terminal CL55_RS00125 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS00125 IPR011545 DEAD/DEAH box helicase domain CL55_RS00125 IPR041222 Primosomal protein N', 3' DNA-binding domain CL55_RS00130 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CL55_RS00130 IPR000089 Biotin/lipoyl attachment CL55_RS00130 IPR002930 Glycine cleavage system H-protein CL55_RS00130 IPR033753 Glycine cleavage system H-protein/Simiate CL55_RS00130 IPR011053 Single hybrid motif CL55_RS00155 IPR014777 Tetrapyrrole methylase, subdomain 1 CL55_RS00155 IPR018063 SAM-dependent methyltransferase RsmI, conserved site CL55_RS00155 IPR008189 rRNA small subunit methyltransferase I CL55_RS00155 IPR014776 Tetrapyrrole methylase, subdomain 2 CL55_RS00155 IPR035996 Tetrapyrrole methylase superfamily CL55_RS00155 IPR000878 Tetrapyrrole methylase CL55_RS00160 IPR035461 GmhA/DiaA CL55_RS00160 IPR004515 Phosphoheptose isomerase CL55_RS00160 IPR001347 Sugar isomerase (SIS) CL55_RS00170 IPR002324 Cytochrome c, class ID CL55_RS00170 IPR009056 Cytochrome c-like domain CL55_RS00170 IPR036909 Cytochrome c-like domain superfamily CL55_RS00225 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CL55_RS00225 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CL55_RS00225 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CL55_RS00225 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CL55_RS00225 IPR004161 Translation elongation factor EFTu-like, domain 2 CL55_RS00225 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS00225 IPR000795 Transcription factor, GTP-binding domain CL55_RS00225 IPR005225 Small GTP-binding protein domain CL55_RS00225 IPR033720 Elongation factor Tu, domain 2 CL55_RS00225 IPR031157 Tr-type G domain, conserved site CL55_RS00225 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00235 IPR038379 SecE superfamily CL55_RS00235 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit CL55_RS00235 IPR005807 SecE subunit of protein translocation complex, bacterial-like CL55_RS00240 IPR005824 KOW CL55_RS00240 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CL55_RS00240 IPR008991 Translation protein SH3-like domain superfamily CL55_RS00240 IPR014722 Ribosomal protein L2, domain 2 CL55_RS00240 IPR001062 Transcription antitermination protein, NusG CL55_RS00240 IPR036735 NusG, N-terminal domain superfamily CL55_RS00240 IPR006645 NusG, N-terminal CL55_RS00245 IPR020784 Ribosomal protein L11, N-terminal CL55_RS00245 IPR020785 Ribosomal protein L11, conserved site CL55_RS00245 IPR000911 Ribosomal protein L11/L12 CL55_RS00245 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CL55_RS00245 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CL55_RS00245 IPR020783 Ribosomal protein L11, C-terminal CL55_RS00245 IPR006519 Ribosomal protein L11, bacterial-type CL55_RS00250 IPR023673 Ribosomal protein L1, conserved site CL55_RS00250 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CL55_RS00250 IPR023674 Ribosomal protein L1-like CL55_RS00250 IPR002143 Ribosomal protein L1 CL55_RS00250 IPR005878 Ribosomal protein L1, bacterial-type CL55_RS00250 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CL55_RS00255 IPR022973 Ribosomal protein L10 CL55_RS00255 IPR001790 Ribosomal protein L10P CL55_RS00260 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CL55_RS00260 IPR013823 Ribosomal protein L7/L12, C-terminal CL55_RS00260 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily CL55_RS00260 IPR008932 Ribosomal protein L7/L12, oligomerisation CL55_RS00260 IPR000206 Ribosomal protein L7/L12 CL55_RS00265 IPR007642 RNA polymerase Rpb2, domain 2 CL55_RS00265 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily CL55_RS00265 IPR007644 RNA polymerase, beta subunit, protrusion CL55_RS00265 IPR007121 RNA polymerase, beta subunit, conserved site CL55_RS00265 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type CL55_RS00265 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily CL55_RS00265 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain CL55_RS00265 IPR015712 DNA-directed RNA polymerase, subunit 2 CL55_RS00265 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain CL55_RS00265 IPR007645 RNA polymerase Rpb2, domain 3 CL55_RS00265 IPR014724 RNA polymerase Rpb2, OB-fold CL55_RS00265 IPR007641 RNA polymerase Rpb2, domain 7 CL55_RS00265 IPR037034 RNA polymerase Rpb2, domain 2 superfamily CL55_RS00270 IPR038120 RNA polymerase Rpb1, funnel domain superfamily CL55_RS00270 IPR006592 RNA polymerase, N-terminal CL55_RS00270 IPR007080 RNA polymerase Rpb1, domain 1 CL55_RS00270 IPR007081 RNA polymerase Rpb1, domain 5 CL55_RS00270 IPR012754 DNA-directed RNA polymerase, subunit beta-prime CL55_RS00270 IPR007066 RNA polymerase Rpb1, domain 3 CL55_RS00270 IPR000722 RNA polymerase, alpha subunit CL55_RS00270 IPR042102 RNA polymerase Rpb1, domain 3 superfamily CL55_RS00270 IPR007083 RNA polymerase Rpb1, domain 4 CL55_RS00275 IPR006032 Ribosomal protein S12/S23 CL55_RS00275 IPR005679 Ribosomal protein S12, bacterial-type CL55_RS00275 IPR012340 Nucleic acid-binding, OB-fold CL55_RS00280 IPR036823 Ribosomal protein S7 domain superfamily CL55_RS00280 IPR023798 Ribosomal protein S7 domain CL55_RS00280 IPR020606 Ribosomal protein S7, conserved site CL55_RS00280 IPR000235 Ribosomal protein S5/S7 CL55_RS00280 IPR005717 Ribosomal protein S7, bacterial/organellar-type CL55_RS00285 IPR000795 Transcription factor, GTP-binding domain CL55_RS00285 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS00285 IPR005517 Translation elongation factor EFG/EF2, domain IV CL55_RS00285 IPR004540 Translation elongation factor EFG/EF2 CL55_RS00285 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS00285 IPR005225 Small GTP-binding protein domain CL55_RS00285 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS00285 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00285 IPR031157 Tr-type G domain, conserved site CL55_RS00285 IPR004161 Translation elongation factor EFTu-like, domain 2 CL55_RS00285 IPR000640 Elongation factor EFG, domain V-like CL55_RS00285 IPR035649 EFG, domain V CL55_RS00285 IPR035647 EF-G domain III/V-like CL55_RS00285 IPR041095 Elongation Factor G, domain II CL55_RS00285 IPR009022 Elongation factor G, domain III CL55_RS00290 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CL55_RS00290 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CL55_RS00290 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS00290 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CL55_RS00290 IPR000795 Transcription factor, GTP-binding domain CL55_RS00290 IPR005225 Small GTP-binding protein domain CL55_RS00290 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00290 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CL55_RS00290 IPR031157 Tr-type G domain, conserved site CL55_RS00290 IPR033720 Elongation factor Tu, domain 2 CL55_RS00290 IPR004161 Translation elongation factor EFTu-like, domain 2 CL55_RS00295 IPR001848 Ribosomal protein S10 CL55_RS00295 IPR018268 Ribosomal protein S10, conserved site CL55_RS00295 IPR027486 Ribosomal protein S10 domain CL55_RS00295 IPR036838 Ribosomal protein S10 domain superfamily CL55_RS00300 IPR000597 Ribosomal protein L3 CL55_RS00300 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS00300 IPR019926 Ribosomal protein L3, conserved site CL55_RS00300 IPR019927 Ribosomal protein L3, bacterial/organelle-type CL55_RS00305 IPR002136 Ribosomal protein L4/L1e CL55_RS00305 IPR013005 50S ribosomal protein uL4 CL55_RS00305 IPR023574 Ribosomal protein L4 domain superfamily CL55_RS00310 IPR012678 Ribosomal protein L23/L15e core domain superfamily CL55_RS00310 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CL55_RS00310 IPR013025 Ribosomal protein L25/L23 CL55_RS00315 IPR012340 Nucleic acid-binding, OB-fold CL55_RS00315 IPR022666 Ribosomal Proteins L2, RNA binding domain CL55_RS00315 IPR014722 Ribosomal protein L2, domain 2 CL55_RS00315 IPR002171 Ribosomal protein L2 CL55_RS00315 IPR005880 Ribosomal protein L2, bacterial/organellar-type CL55_RS00315 IPR022669 Ribosomal protein L2, C-terminal CL55_RS00315 IPR022671 Ribosomal protein L2, conserved site CL55_RS00315 IPR014726 Ribosomal protein L2, domain 3 CL55_RS00315 IPR008991 Translation protein SH3-like domain superfamily CL55_RS00320 IPR005732 Ribosomal protein S19, bacterial-type CL55_RS00320 IPR020934 Ribosomal protein S19 conserved site CL55_RS00320 IPR002222 Ribosomal protein S19/S15 CL55_RS00320 IPR023575 Ribosomal protein S19, superfamily CL55_RS00325 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type CL55_RS00325 IPR036394 Ribosomal protein L22/L17 superfamily CL55_RS00325 IPR018260 Ribosomal protein L22/L17, conserved site CL55_RS00325 IPR001063 Ribosomal protein L22/L17 CL55_RS00330 IPR005704 Ribosomal protein S3, bacterial-type CL55_RS00330 IPR009019 K homology domain superfamily, prokaryotic type CL55_RS00330 IPR004044 K Homology domain, type 2 CL55_RS00330 IPR001351 Ribosomal protein S3, C-terminal CL55_RS00330 IPR004087 K Homology domain CL55_RS00330 IPR018280 Ribosomal protein S3, conserved site CL55_RS00330 IPR036419 Ribosomal protein S3, C-terminal domain superfamily CL55_RS00330 IPR015946 K homology domain-like, alpha/beta CL55_RS00335 IPR020798 Ribosomal protein L16, conserved site CL55_RS00335 IPR016180 Ribosomal protein L10e/L16 CL55_RS00335 IPR036920 Ribosomal protein L10e/L16 superfamily CL55_RS00335 IPR000114 Ribosomal protein L16 CL55_RS00340 IPR001854 Ribosomal protein L29/L35 CL55_RS00340 IPR036049 Ribosomal protein L29/L35 superfamily CL55_RS00345 IPR012340 Nucleic acid-binding, OB-fold CL55_RS00345 IPR019984 30S ribosomal protein S17 CL55_RS00345 IPR000266 Ribosomal protein S17/S11 CL55_RS00345 IPR019979 Ribosomal protein S17, conserved site CL55_RS00350 IPR019972 Ribosomal protein L14P, conserved site CL55_RS00350 IPR005745 Ribosomal protein L14P, bacterial-type CL55_RS00350 IPR000218 Ribosomal protein L14P CL55_RS00350 IPR036853 Ribosomal protein L14 superfamily CL55_RS00355 IPR008991 Translation protein SH3-like domain superfamily CL55_RS00355 IPR005824 KOW CL55_RS00355 IPR041988 Ribosomal Protein L26/L24, KOW domain CL55_RS00355 IPR003256 Ribosomal protein L24 CL55_RS00355 IPR014722 Ribosomal protein L2, domain 2 CL55_RS00360 IPR020929 Ribosomal protein L5, conserved site CL55_RS00360 IPR022803 Ribosomal protein L5 domain superfamily CL55_RS00360 IPR002132 Ribosomal protein L5 CL55_RS00360 IPR031310 Ribosomal protein L5, N-terminal CL55_RS00360 IPR031309 Ribosomal protein L5, C-terminal CL55_RS00360 IPR020930 Ribosomal protein L5, bacterial-type CL55_RS00365 IPR001209 Ribosomal protein S14 CL55_RS00365 IPR023036 Ribosomal protein S14, bacterial/plastid CL55_RS00370 IPR035987 Ribosomal protein S8 superfamily CL55_RS00370 IPR000630 Ribosomal protein S8 CL55_RS00375 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily CL55_RS00375 IPR020040 Ribosomal protein L6, alpha-beta domain CL55_RS00375 IPR000702 Ribosomal protein L6 CL55_RS00375 IPR002358 Ribosomal protein L6, conserved site CL55_RS00375 IPR019906 Ribosomal protein L6, bacterial-type CL55_RS00380 IPR004389 Ribosomal protein L18, bacterial-type CL55_RS00380 IPR005484 Ribosomal protein L18 CL55_RS00385 IPR005712 Ribosomal protein S5, bacterial-type CL55_RS00385 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS00385 IPR000851 Ribosomal protein S5 CL55_RS00385 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS00385 IPR013810 Ribosomal protein S5, N-terminal CL55_RS00385 IPR018192 Ribosomal protein S5, N-terminal, conserved site CL55_RS00385 IPR005324 Ribosomal protein S5, C-terminal CL55_RS00390 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CL55_RS00390 IPR005996 Ribosomal protein L30, bacterial-type CL55_RS00390 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CL55_RS00395 IPR005749 Ribosomal protein L15, bacterial-type CL55_RS00395 IPR030878 Ribosomal protein L15 CL55_RS00395 IPR036227 Ribosomal L18e/L15P superfamily CL55_RS00395 IPR021131 Ribosomal protein L18e/L15P CL55_RS00400 IPR026593 Protein translocase subunit SecY CL55_RS00400 IPR023201 SecY domain superfamily CL55_RS00400 IPR030659 SecY conserved site CL55_RS00400 IPR002208 SecY/SEC61-alpha family CL55_RS00405 IPR006196 RNA-binding domain, S1, IF1 type CL55_RS00405 IPR004368 Translation initiation factor IF-1 CL55_RS00405 IPR012340 Nucleic acid-binding, OB-fold CL55_RS00410 IPR000473 Ribosomal protein L36 CL55_RS00410 IPR035977 Ribosomal protein L36 superfamily CL55_RS00415 IPR018269 Ribosomal protein S13, conserved site CL55_RS00415 IPR027437 30s ribosomal protein S13, C-terminal CL55_RS00415 IPR001892 Ribosomal protein S13 CL55_RS00415 IPR019980 Ribosomal protein S13, bacterial-type CL55_RS00415 IPR010979 Ribosomal protein S13-like, H2TH CL55_RS00420 IPR019981 Ribosomal protein S11, bacterial-type CL55_RS00420 IPR018102 Ribosomal S11, conserved site CL55_RS00420 IPR001971 Ribosomal protein S11 CL55_RS00420 IPR036967 Ribosomal protein S11 superfamily CL55_RS00425 IPR036986 RNA-binding S4 domain superfamily CL55_RS00425 IPR002942 RNA-binding S4 domain CL55_RS00425 IPR005709 Ribosomal protein S4, bacterial-type CL55_RS00425 IPR001912 Ribosomal protein S4/S9, N-terminal CL55_RS00425 IPR018079 Ribosomal protein S4, conserved site CL55_RS00425 IPR022801 Ribosomal protein S4/S9 CL55_RS00430 IPR011260 RNA polymerase, alpha subunit, C-terminal CL55_RS00430 IPR036643 DNA-directed RNA polymerase, insert domain superfamily CL55_RS00430 IPR011773 DNA-directed RNA polymerase, alpha subunit CL55_RS00430 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type CL55_RS00430 IPR011262 DNA-directed RNA polymerase, insert domain CL55_RS00430 IPR036603 RNA polymerase, RBP11-like subunit CL55_RS00435 IPR036373 Ribosomal protein L17 superfamily CL55_RS00435 IPR000456 Ribosomal protein L17 CL55_RS00445 IPR017937 Thioredoxin, conserved site CL55_RS00445 IPR022910 Thiol:disulphide interchange protein DsbD CL55_RS00445 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CL55_RS00445 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CL55_RS00445 IPR035671 DsbD gamma CL55_RS00445 IPR003834 Cytochrome C biogenesis protein, transmembrane domain CL55_RS00445 IPR013766 Thioredoxin domain CL55_RS00445 IPR036249 Thioredoxin-like superfamily CL55_RS00450 IPR001731 Delta-aminolevulinic acid dehydratase CL55_RS00450 IPR013785 Aldolase-type TIM barrel CL55_RS00450 IPR030656 Delta-aminolevulinic acid dehydratase, active site CL55_RS00455 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC CL55_RS00455 IPR030393 EngB-type guanine nucleotide-binding (G) domain CL55_RS00455 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00455 IPR006073 GTP binding domain CL55_RS00460 IPR036909 Cytochrome c-like domain superfamily CL55_RS00460 IPR009056 Cytochrome c-like domain CL55_RS00460 IPR024167 Cytochrome c4-like CL55_RS00465 IPR029066 PLP-binding barrel CL55_RS00465 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CL55_RS00465 IPR002986 Diaminopimelate decarboxylase, LysA CL55_RS00465 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal CL55_RS00465 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CL55_RS00465 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal CL55_RS00465 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CL55_RS00465 IPR000183 Ornithine/DAP/Arg decarboxylase CL55_RS00475 IPR002908 Frataxin/CyaY CL55_RS00475 IPR036524 Frataxin/CyaY superfamily CL55_RS00475 IPR020895 Frataxin conserved site CL55_RS00480 IPR016037 3-dehydroquinate synthase AroB CL55_RS00480 IPR030960 3-dehydroquinate synthase domain CL55_RS00480 IPR030963 3-dehydroquinate synthase family CL55_RS00485 IPR000623 Shikimate kinase/Threonine synthase-like 1 CL55_RS00485 IPR031322 Shikimate kinase/gluconokinase CL55_RS00485 IPR023000 Shikimate kinase, conserved site CL55_RS00485 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00490 IPR013355 Type IV pilus secretin PilQ CL55_RS00490 IPR004845 Type II secretion system GspD, conserved site CL55_RS00490 IPR021731 AMIN domain CL55_RS00490 IPR038591 NolW-like superfamily CL55_RS00490 IPR005644 NolW-like CL55_RS00490 IPR001775 GspD/PilQ family CL55_RS00490 IPR011662 Secretin/TonB, short N-terminal domain CL55_RS00490 IPR004846 Type II/III secretion system CL55_RS00500 IPR001460 Penicillin-binding protein, transpeptidase CL55_RS00500 IPR036950 Penicillin binding protein transglycosylase domain CL55_RS00500 IPR012338 Beta-lactamase/transpeptidase-like CL55_RS00500 IPR001264 Glycosyl transferase, family 51 CL55_RS00500 IPR023346 Lysozyme-like domain superfamily CL55_RS00500 IPR031376 Penicillin-binding protein, OB-like domain CL55_RS00510 IPR006982 Glutamate synthase, central-N CL55_RS00510 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily CL55_RS00510 IPR002932 Glutamate synthase domain CL55_RS00510 IPR017932 Glutamine amidotransferase type 2 domain CL55_RS00510 IPR029055 Nucleophile aminohydrolases, N-terminal CL55_RS00510 IPR002489 Glutamate synthase, alpha subunit, C-terminal CL55_RS00510 IPR013785 Aldolase-type TIM barrel CL55_RS00515 IPR023753 FAD/NAD(P)-binding domain CL55_RS00515 IPR009051 Alpha-helical ferredoxin CL55_RS00515 IPR028261 Dihydroprymidine dehydrogenase domain II CL55_RS00515 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 CL55_RS00515 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS00520 IPR003439 ABC transporter-like CL55_RS00520 IPR017871 ABC transporter, conserved site CL55_RS00520 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00520 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl CL55_RS00520 IPR003593 AAA+ ATPase domain CL55_RS00525 IPR003453 ABC transport permease subunit MlaE, Proteobacteria CL55_RS00525 IPR030802 ABC transporter permease MalE CL55_RS00530 IPR003399 Mce/MlaD CL55_RS00530 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD CL55_RS00550 IPR003593 AAA+ ATPase domain CL55_RS00550 IPR003439 ABC transporter-like CL55_RS00550 IPR017871 ABC transporter, conserved site CL55_RS00550 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00555 IPR000412 ABC-2 transporter CL55_RS00555 IPR013525 ABC-2 type transporter CL55_RS00560 IPR036065 BolA-like superfamily CL55_RS00560 IPR002634 BolA protein CL55_RS00565 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CL55_RS00565 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CL55_RS00565 IPR036968 Enolpyruvate transferase domain superfamily CL55_RS00565 IPR001986 Enolpyruvate transferase domain CL55_RS00570 IPR024893 ATP phosphoribosyltransferase HisG, short form CL55_RS00570 IPR013820 ATP phosphoribosyltransferase, catalytic domain CL55_RS00570 IPR018198 ATP phosphoribosyltransferase, conserved site CL55_RS00570 IPR001348 ATP phosphoribosyltransferase HisG CL55_RS00575 IPR001692 Histidinol dehydrogenase, conserved site CL55_RS00575 IPR022695 Histidinol dehydrogenase, monofunctional CL55_RS00575 IPR012131 Histidinol dehydrogenase CL55_RS00575 IPR016161 Aldehyde/histidinol dehydrogenase CL55_RS00580 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CL55_RS00580 IPR004839 Aminotransferase, class I/classII CL55_RS00580 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS00580 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS00580 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS00580 IPR005861 Histidinol-phosphate aminotransferase family CL55_RS00585 IPR000807 Imidazoleglycerol-phosphate dehydratase CL55_RS00585 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site CL55_RS00585 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS00585 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily CL55_RS00590 IPR029062 Class I glutamine amidotransferase-like CL55_RS00590 IPR010139 Imidazole glycerol phosphate synthase, subunit H CL55_RS00590 IPR017926 Glutamine amidotransferase CL55_RS00595 IPR013785 Aldolase-type TIM barrel CL55_RS00595 IPR006062 Histidine biosynthesis CL55_RS00595 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA CL55_RS00595 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase CL55_RS00595 IPR011060 Ribulose-phosphate binding barrel CL55_RS00600 IPR013785 Aldolase-type TIM barrel CL55_RS00600 IPR006062 Histidine biosynthesis CL55_RS00600 IPR011060 Ribulose-phosphate binding barrel CL55_RS00600 IPR004651 Histidine biosynthesis, HisF CL55_RS00605 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain CL55_RS00605 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily CL55_RS00605 IPR026660 Phosphoribosyl-AMP cyclohydrolase CL55_RS00610 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like CL55_RS00610 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase CL55_RS00615 IPR011146 HIT-like domain CL55_RS00615 IPR036265 HIT-like superfamily CL55_RS00615 IPR001310 Histidine triad (HIT) protein CL55_RS00615 IPR019808 Histidine triad, conserved site CL55_RS00620 IPR003369 Sec-independent protein translocase protein TatA/B/E CL55_RS00620 IPR006312 Sec-independent protein translocase protein TatA/E CL55_RS00625 IPR018448 Twin-arginine translocation protein TatB CL55_RS00625 IPR003369 Sec-independent protein translocase protein TatA/B/E CL55_RS00630 IPR002033 Sec-independent periplasmic protein translocase TatC CL55_RS00630 IPR019820 Sec-independent periplasmic protein translocase, conserved site CL55_RS00640 IPR002299 Porin, Neisseria sp. type CL55_RS00640 IPR023614 Porin domain superfamily CL55_RS00640 IPR033900 Porin domain, Gram-negative type CL55_RS00640 IPR001702 Porin, Gram-negative type CL55_RS00655 IPR001185 Large-conductance mechanosensitive channel CL55_RS00655 IPR036019 Gated mechanosensitive channel CL55_RS00655 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L CL55_RS00655 IPR019823 Large-conductance mechanosensitive channel, conserved site CL55_RS00660 IPR017941 Rieske [2Fe-2S] iron-sulphur domain CL55_RS00660 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal CL55_RS00660 IPR005805 Rieske iron-sulphur protein, C-terminal CL55_RS00660 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit CL55_RS00660 IPR014349 Rieske iron-sulphur protein CL55_RS00660 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily CL55_RS00670 IPR036909 Cytochrome c-like domain superfamily CL55_RS00670 IPR002326 Cytochrome c1 CL55_RS00670 IPR009056 Cytochrome c-like domain CL55_RS00675 IPR034341 Stringent starvation protein A, N-terminal CL55_RS00675 IPR040079 Glutathione Transferase family CL55_RS00675 IPR010987 Glutathione S-transferase, C-terminal-like CL55_RS00675 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CL55_RS00675 IPR004045 Glutathione S-transferase, N-terminal CL55_RS00675 IPR036249 Thioredoxin-like superfamily CL55_RS00675 IPR004046 Glutathione S-transferase, C-terminal CL55_RS00680 IPR036760 SspB-like superfamily CL55_RS00680 IPR007481 Stringent starvation protein B CL55_RS00695 IPR004736 MFS transporter, metabolite:H symporter CL55_RS00695 IPR036259 MFS transporter superfamily CL55_RS00695 IPR011701 Major facilitator superfamily CL55_RS00695 IPR020846 Major facilitator superfamily domain CL55_RS00695 IPR005829 Sugar transporter, conserved site CL55_RS00695 IPR005828 Major facilitator, sugar transporter-like CL55_RS00700 IPR003798 DNA recombination RmuC CL55_RS00705 IPR002109 Glutaredoxin CL55_RS00705 IPR033658 Glutaredoxin, PICOT-like CL55_RS00705 IPR014434 Monothiol glutaredoxin CL55_RS00705 IPR004480 Monothiol glutaredoxin-related CL55_RS00705 IPR036249 Thioredoxin-like superfamily CL55_RS00710 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CL55_RS00710 IPR007848 Methyltransferase small domain CL55_RS00710 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS00710 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific CL55_RS00710 IPR004556 Methyltransferase HemK-like CL55_RS00710 IPR040758 Release factor glutamine methyltransferase, N-terminal domain CL55_RS00715 IPR005139 Peptide chain release factor CL55_RS00715 IPR000352 Peptide chain release factor class I CL55_RS00715 IPR004373 Peptide chain release factor 1 CL55_RS00720 IPR036291 NAD(P)-binding domain superfamily CL55_RS00720 IPR018214 Glutamyl-tRNA reductase, conserved site CL55_RS00720 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CL55_RS00720 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal CL55_RS00720 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain CL55_RS00720 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase CL55_RS00720 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily CL55_RS00720 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily CL55_RS00730 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CL55_RS00730 IPR003477 mRNA interferase PemK-like CL55_RS00735 IPR021558 Antitoxin MazE-like CL55_RS00740 IPR005122 Uracil-DNA glycosylase-like CL55_RS00740 IPR002043 Uracil-DNA glycosylase family 1 CL55_RS00740 IPR018085 Uracil-DNA glycosylase, active site CL55_RS00740 IPR036895 Uracil-DNA glycosylase-like domain superfamily CL55_RS00750 IPR012336 Thioredoxin-like fold CL55_RS00750 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal CL55_RS00750 IPR017937 Thioredoxin, conserved site CL55_RS00750 IPR033954 Disulphide bond isomerase, DsbC/G CL55_RS00750 IPR036249 Thioredoxin-like superfamily CL55_RS00755 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site CL55_RS00755 IPR002938 FAD-binding domain CL55_RS00755 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS00755 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 CL55_RS00760 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 CL55_RS00760 IPR012675 Beta-grasp domain superfamily CL55_RS00760 IPR031167 OBG-type guanine nucleotide-binding (G) domain CL55_RS00760 IPR023192 TGS-like domain superfamily CL55_RS00760 IPR006073 GTP binding domain CL55_RS00760 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00760 IPR004095 TGS CL55_RS00760 IPR013029 YchF, C-terminal domain CL55_RS00760 IPR041706 YchF, N-terminal CL55_RS00760 IPR012676 TGS-like CL55_RS00775 IPR001468 Indole-3-glycerol phosphate synthase, conserved site CL55_RS00775 IPR013798 Indole-3-glycerol phosphate synthase CL55_RS00775 IPR013785 Aldolase-type TIM barrel CL55_RS00775 IPR011060 Ribulose-phosphate binding barrel CL55_RS00780 IPR005940 Anthranilate phosphoribosyl transferase CL55_RS00780 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily CL55_RS00780 IPR000312 Glycosyl transferase, family 3 CL55_RS00780 IPR017459 Glycosyl transferase family 3, N-terminal domain CL55_RS00780 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily CL55_RS00785 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CL55_RS00785 IPR029062 Class I glutamine amidotransferase-like CL55_RS00785 IPR017926 Glutamine amidotransferase CL55_RS00790 IPR006805 Anthranilate synthase component I, N-terminal CL55_RS00790 IPR005801 ADC synthase CL55_RS00790 IPR015890 Chorismate-utilising enzyme, C-terminal CL55_RS00790 IPR005256 Anthranilate synthase component I, PabB-like CL55_RS00790 IPR019999 Anthranilate synthase component I-like CL55_RS00795 IPR011060 Ribulose-phosphate binding barrel CL55_RS00795 IPR013785 Aldolase-type TIM barrel CL55_RS00795 IPR026019 Ribulose-phosphate 3-epimerase CL55_RS00795 IPR000056 Ribulose-phosphate 3-epimerase-like CL55_RS00800 IPR007474 ApaG domain CL55_RS00800 IPR036767 ApaG domain superfamily CL55_RS00800 IPR023065 Uncharacterised protein family ApaG CL55_RS00815 IPR014748 Enoyl-CoA hydratase, C-terminal CL55_RS00815 IPR001753 Enoyl-CoA hydratase/isomerase CL55_RS00815 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CL55_RS00815 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS00820 IPR036264 Bacterial exopeptidase dimerisation domain CL55_RS00820 IPR011650 Peptidase M20, dimerisation domain CL55_RS00820 IPR017439 Amidohydrolase CL55_RS00820 IPR002933 Peptidase M20 CL55_RS00820 IPR023905 Acetyldiaminopimelate deacetylase CL55_RS00825 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00825 IPR004472 Dethiobiotin synthase BioD CL55_RS00830 IPR004839 Aminotransferase, class I/classII CL55_RS00830 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS00830 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS00830 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria CL55_RS00830 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type CL55_RS00830 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS00835 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS00835 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS00835 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA CL55_RS00835 IPR005814 Aminotransferase class-III CL55_RS00835 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS00840 IPR013785 Aldolase-type TIM barrel CL55_RS00840 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB CL55_RS00840 IPR007197 Radical SAM CL55_RS00840 IPR006638 Elp3/MiaB/NifB CL55_RS00840 IPR024177 Biotin synthase CL55_RS00840 IPR010722 Biotin and thiamin synthesis-associated domain CL55_RS00845 IPR009078 Ferritin-like superfamily CL55_RS00845 IPR011566 Ubiquinone biosynthesis protein Coq7 CL55_RS00850 IPR035642 MraZ, N-terminal CL55_RS00850 IPR035644 MraZ, C-terminal CL55_RS00850 IPR020603 MraZ domain CL55_RS00850 IPR038619 MraZ superfamily CL55_RS00850 IPR007159 SpoVT-AbrB domain CL55_RS00850 IPR037914 SpoVT-AbrB domain superfamily CL55_RS00850 IPR003444 Transcriptional regulator MraZ CL55_RS00855 IPR002903 Ribosomal RNA small subunit methyltransferase H CL55_RS00855 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily CL55_RS00855 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS00865 IPR005311 Penicillin-binding protein, dimerisation domain CL55_RS00865 IPR001460 Penicillin-binding protein, transpeptidase CL55_RS00865 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CL55_RS00865 IPR037532 Peptidoglycan D,D-transpeptidase FtsI CL55_RS00865 IPR012338 Beta-lactamase/transpeptidase-like CL55_RS00870 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS00870 IPR035911 MurE/MurF, N-terminal CL55_RS00870 IPR013221 Mur ligase, central CL55_RS00870 IPR004101 Mur ligase, C-terminal CL55_RS00870 IPR036565 Mur-like, catalytic domain superfamily CL55_RS00870 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase CL55_RS00875 IPR036565 Mur-like, catalytic domain superfamily CL55_RS00875 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase CL55_RS00875 IPR004101 Mur ligase, C-terminal CL55_RS00875 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS00875 IPR035911 MurE/MurF, N-terminal CL55_RS00875 IPR013221 Mur ligase, central CL55_RS00875 IPR000713 Mur ligase, N-terminal catalytic domain CL55_RS00880 IPR000715 Glycosyl transferase, family 4 CL55_RS00880 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase CL55_RS00880 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CL55_RS00885 IPR036565 Mur-like, catalytic domain superfamily CL55_RS00885 IPR004101 Mur ligase, C-terminal CL55_RS00885 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase CL55_RS00885 IPR013221 Mur ligase, central CL55_RS00885 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS00890 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CL55_RS00890 IPR013437 Probable peptidoglycan glycosyltransferase FtsW CL55_RS00895 IPR006009 N-acetylglucosaminyltransferase, MurG CL55_RS00895 IPR007235 Glycosyl transferase, family 28, C-terminal CL55_RS00895 IPR004276 Glycosyltransferase family 28, N-terminal domain CL55_RS00900 IPR036565 Mur-like, catalytic domain superfamily CL55_RS00900 IPR004101 Mur ligase, C-terminal CL55_RS00900 IPR005758 UDP-N-acetylmuramate--L-alanine ligase CL55_RS00900 IPR000713 Mur ligase, N-terminal catalytic domain CL55_RS00900 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS00900 IPR013221 Mur ligase, central CL55_RS00905 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS00905 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site CL55_RS00905 IPR016185 Pre-ATP-grasp domain superfamily CL55_RS00905 IPR011127 D-alanine--D-alanine ligase, N-terminal domain CL55_RS00905 IPR005905 D-alanine--D-alanine ligase CL55_RS00905 IPR011095 D-alanine--D-alanine ligase, C-terminal CL55_RS00905 IPR011761 ATP-grasp fold CL55_RS00910 IPR005548 Cell division protein FtsQ/DivIB CL55_RS00910 IPR026579 Cell division protein FtsQ CL55_RS00910 IPR034746 POTRA domain CL55_RS00910 IPR013685 POTRA domain, FtsQ-type CL55_RS00915 IPR003494 SHS2 domain inserted in FtsA CL55_RS00915 IPR020823 Cell division protein FtsA CL55_RS00920 IPR000158 Cell division protein FtsZ CL55_RS00920 IPR003008 Tubulin/FtsZ, GTPase domain CL55_RS00920 IPR036525 Tubulin/FtsZ, GTPase domain superfamily CL55_RS00920 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain CL55_RS00920 IPR008280 Tubulin/FtsZ, C-terminal CL55_RS00920 IPR024757 Cell division protein FtsZ, C-terminal CL55_RS00920 IPR020805 Cell division protein FtsZ, conserved site CL55_RS00925 IPR013766 Thioredoxin domain CL55_RS00925 IPR036249 Thioredoxin-like superfamily CL55_RS00925 IPR013740 Redoxin CL55_RS00925 IPR037944 Peroxiredoxin-5-like CL55_RS00930 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal CL55_RS00930 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal CL55_RS00930 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS00930 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase CL55_RS00940 IPR020937 SecA conserved site CL55_RS00940 IPR011115 SecA DEAD-like, N-terminal CL55_RS00940 IPR036670 SecA, preprotein cross-linking domain superfamily CL55_RS00940 IPR014018 SecA motor DEAD CL55_RS00940 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00940 IPR004027 SEC-C motif CL55_RS00940 IPR000185 Protein translocase subunit SecA CL55_RS00940 IPR036266 SecA, Wing/Scaffold superfamily CL55_RS00940 IPR011116 SecA Wing/Scaffold CL55_RS00940 IPR011130 SecA, preprotein cross-linking domain CL55_RS00950 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 CL55_RS00950 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal CL55_RS00950 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal CL55_RS00950 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 CL55_RS00950 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily CL55_RS00950 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal CL55_RS00955 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS00955 IPR023753 FAD/NAD(P)-binding domain CL55_RS00970 IPR002813 Arginine biosynthesis protein ArgJ CL55_RS00970 IPR016117 ArgJ-like domain superfamily CL55_RS00970 IPR042195 ArgJ beta chain, C-terminal domain CL55_RS00980 IPR003561 Mutator MutT CL55_RS00980 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS00980 IPR000086 NUDIX hydrolase domain CL55_RS00980 IPR020084 NUDIX hydrolase, conserved site CL55_RS00980 IPR020476 NUDIX hydrolase CL55_RS00985 IPR036268 ZapD domain superfamily CL55_RS00985 IPR027462 Z ring-associated protein D, C-terminal CL55_RS00985 IPR009777 Cell division protein ZapD CL55_RS00990 IPR001977 Dephospho-CoA kinase CL55_RS00990 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS00995 IPR000045 Prepilin type IV endopeptidase, peptidase domain CL55_RS00995 IPR014032 Peptidase A24A, prepilin type IV, bacterial CL55_RS00995 IPR010627 Peptidase A24A, N-terminal CL55_RS01000 IPR003004 GspF/PilC family CL55_RS01000 IPR042094 Type II secretion system F domain superfamily CL55_RS01000 IPR018076 Type II secretion system F domain CL55_RS01005 IPR003593 AAA+ ATPase domain CL55_RS01005 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS01005 IPR001482 Type II/IV secretion system protein CL55_RS01005 IPR037257 General secretory system II, protein E, N-terminal superfamily CL55_RS01005 IPR007831 General secretory system II, protein E, N-terminal CL55_RS01005 IPR013374 ATPase, type IV, pilus assembly, PilB CL55_RS01010 IPR005170 Transporter-associated domain CL55_RS01010 IPR016169 FAD-binding, type PCMH, subdomain 2 CL55_RS01010 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS01010 IPR002550 CNNM, transmembrane domain CL55_RS01010 IPR000644 CBS domain CL55_RS01020 IPR008949 Isoprenoid synthase domain superfamily CL55_RS01020 IPR033904 Trans-Isoprenyl Diphosphate Synthases, head-to-head CL55_RS01020 IPR019845 Squalene/phytoene synthase, conserved site CL55_RS01030 IPR036291 NAD(P)-binding domain superfamily CL55_RS01030 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS01030 IPR013752 Ketopantoate reductase, C-terminal domain CL55_RS01030 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS01030 IPR013332 Ketopantoate reductase, N-terminal domain CL55_RS01045 IPR033749 Polyprenyl synthetase, conserved site CL55_RS01045 IPR008949 Isoprenoid synthase domain superfamily CL55_RS01045 IPR000092 Polyprenyl synthetase CL55_RS01050 IPR018258 Ribosomal protein L21, conserved site CL55_RS01050 IPR028909 Ribosomal protein L21-like CL55_RS01050 IPR036164 L21-like superfamily CL55_RS01050 IPR001787 Ribosomal protein L21 CL55_RS01055 IPR018261 Ribosomal protein L27, conserved site CL55_RS01055 IPR001684 Ribosomal protein L27 CL55_RS01060 IPR006074 GTP1/OBG, conserved site CL55_RS01060 IPR031167 OBG-type guanine nucleotide-binding (G) domain CL55_RS01060 IPR035101 GTP-binding protein, Obg-type CL55_RS01060 IPR006073 GTP binding domain CL55_RS01060 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS01060 IPR036726 GTP1/OBG domain superfamily CL55_RS01060 IPR014100 GTP-binding protein Obg/CgtA CL55_RS01060 IPR006169 GTP1/OBG domain CL55_RS01065 IPR019797 Glutamate 5-kinase, conserved site CL55_RS01065 IPR002478 PUA domain CL55_RS01065 IPR015947 PUA-like superfamily CL55_RS01065 IPR011529 Glutamate 5-kinase CL55_RS01065 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase CL55_RS01065 IPR036393 Acetylglutamate kinase-like superfamily CL55_RS01065 IPR001048 Aspartate/glutamate/uridylate kinase CL55_RS01065 IPR041739 Glutamate-5-kinase domain CL55_RS01065 IPR001057 Glutamate/acetylglutamate kinase CL55_RS01065 IPR036974 PUA domain superfamily CL55_RS01075 IPR020476 NUDIX hydrolase CL55_RS01075 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS01075 IPR022927 RNA pyrophosphohydrolase RppH CL55_RS01075 IPR000086 NUDIX hydrolase domain CL55_RS01075 IPR020084 NUDIX hydrolase, conserved site CL55_RS01080 IPR033730 Prokaryote proline-tRNA ligase core domain CL55_RS01080 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CL55_RS01080 IPR006195 Aminoacyl-tRNA synthetase, class II CL55_RS01080 IPR036621 Anticodon-binding domain superfamily CL55_RS01080 IPR002316 Proline-tRNA ligase, class IIa CL55_RS01080 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type CL55_RS01080 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 CL55_RS01080 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CL55_RS01080 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CL55_RS01080 IPR004154 Anticodon-binding CL55_RS01085 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CL55_RS01085 IPR013822 Signal recognition particle SRP54, helical bundle CL55_RS01085 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CL55_RS01085 IPR022941 Signal recognition particle, SRP54 subunit CL55_RS01085 IPR003593 AAA+ ATPase domain CL55_RS01085 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS01085 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily CL55_RS01085 IPR004125 Signal recognition particle, SRP54 subunit, M-domain CL55_RS01085 IPR004780 Signal recognition particle protein CL55_RS01095 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CL55_RS01095 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CL55_RS01100 IPR039718 Ribonucleoside-diphosphate reductase large subunit CL55_RS01100 IPR013509 Ribonucleotide reductase large subunit, N-terminal CL55_RS01100 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal CL55_RS01100 IPR005144 ATP-cone domain CL55_RS01100 IPR013346 Ribonucleotide reductase, class I , alpha subunit CL55_RS01100 IPR000788 Ribonucleotide reductase large subunit, C-terminal CL55_RS01105 IPR009078 Ferritin-like superfamily CL55_RS01105 IPR012348 Ribonucleotide reductase-like CL55_RS01105 IPR033909 Ribonucleotide reductase small subunit CL55_RS01105 IPR000358 Ribonucleotide reductase small subunit family CL55_RS01125 IPR004498 Ribosomal protein L11 methyltransferase CL55_RS01125 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS01130 IPR016185 Pre-ATP-grasp domain superfamily CL55_RS01130 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase CL55_RS01130 IPR011054 Rudiment single hybrid motif CL55_RS01130 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS01130 IPR011761 ATP-grasp fold CL55_RS01130 IPR005481 Biotin carboxylase-like, N-terminal domain CL55_RS01130 IPR011764 Biotin carboxylation domain CL55_RS01130 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CL55_RS01130 IPR005482 Biotin carboxylase, C-terminal CL55_RS01135 IPR011053 Single hybrid motif CL55_RS01135 IPR000089 Biotin/lipoyl attachment CL55_RS01135 IPR001882 Biotin-binding site CL55_RS01135 IPR001249 Acetyl-CoA biotin carboxyl carrier CL55_RS01140 IPR036441 Dehydroquinase, class II superfamily CL55_RS01140 IPR018509 Dehydroquinase, class II, conserved site CL55_RS01140 IPR001874 Dehydroquinase, class II CL55_RS01145 IPR013766 Thioredoxin domain CL55_RS01145 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CL55_RS01145 IPR036249 Thioredoxin-like superfamily CL55_RS01150 IPR004101 Mur ligase, C-terminal CL55_RS01150 IPR036565 Mur-like, catalytic domain superfamily CL55_RS01150 IPR000713 Mur ligase, N-terminal catalytic domain CL55_RS01150 IPR005757 Murein peptide ligase CL55_RS01150 IPR013221 Mur ligase, central CL55_RS01150 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS01155 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CL55_RS01155 IPR036291 NAD(P)-binding domain superfamily CL55_RS01155 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS01155 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS01160 IPR013223 Ribonuclease B, N-terminal OB domain CL55_RS01160 IPR003029 S1 domain CL55_RS01160 IPR022967 RNA-binding domain, S1 CL55_RS01160 IPR004476 Ribonuclease II/ribonuclease R CL55_RS01160 IPR022966 Ribonuclease II/R, conserved site CL55_RS01160 IPR012340 Nucleic acid-binding, OB-fold CL55_RS01160 IPR001900 Ribonuclease II/R CL55_RS01160 IPR011804 Ribonuclease II CL55_RS01160 IPR011129 Cold shock domain CL55_RS01170 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal CL55_RS01170 IPR036291 NAD(P)-binding domain superfamily CL55_RS01170 IPR041121 SDH, C-terminal CL55_RS01170 IPR022893 Shikimate dehydrogenase family CL55_RS01170 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CL55_RS01170 IPR011342 Shikimate dehydrogenase CL55_RS01175 IPR036950 Penicillin binding protein transglycosylase domain CL55_RS01175 IPR011812 Biosynthetic peptidoglycan transglycosylase CL55_RS01175 IPR023346 Lysozyme-like domain superfamily CL55_RS01175 IPR001264 Glycosyl transferase, family 51 CL55_RS01180 IPR011060 Ribulose-phosphate binding barrel CL55_RS01180 IPR018089 Orotidine 5'-phosphate decarboxylase, active site CL55_RS01180 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 CL55_RS01180 IPR001754 Orotidine 5'-phosphate decarboxylase domain CL55_RS01180 IPR013785 Aldolase-type TIM barrel CL55_RS01185 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB CL55_RS01185 IPR004488 Magnesium/cobalt transport protein CorA CL55_RS01190 IPR008136 CinA, C-terminal CL55_RS01190 IPR036653 CinA-like, C-terminal CL55_RS01195 IPR026037 Phosphatidylglycerophosphatase A CL55_RS01195 IPR036681 PgpA-like superfamily CL55_RS01195 IPR007686 YutG/PgpA domain CL55_RS01200 IPR010918 PurM-like, C-terminal domain CL55_RS01200 IPR036676 PurM-like, C-terminal domain superfamily CL55_RS01200 IPR016188 PurM-like, N-terminal domain CL55_RS01200 IPR036921 PurM-like, N-terminal domain superfamily CL55_RS01200 IPR006283 Thiamine-monophosphate kinase CL55_RS01205 IPR012301 Malic enzyme, N-terminal domain CL55_RS01205 IPR015884 Malic enzyme, conserved site CL55_RS01205 IPR037062 Malic enzyme, N-terminal domain superfamily CL55_RS01205 IPR002505 Phosphate acetyl/butaryl transferase CL55_RS01205 IPR012302 Malic enzyme, NAD-binding CL55_RS01205 IPR012188 NAD(P)-dependent malic enzyme CL55_RS01205 IPR036291 NAD(P)-binding domain superfamily CL55_RS01205 IPR042113 Phosphate acetyltransferase, domain 1 CL55_RS01205 IPR042112 Phosphate acetyltransferase, domain 2 CL55_RS01215 IPR029028 Alpha/beta knot methyltransferases CL55_RS01215 IPR006700 Ribosomal RNA small subunit methyltransferase E CL55_RS01215 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CL55_RS01215 IPR015947 PUA-like superfamily CL55_RS01220 IPR020826 Transketolase binding site CL55_RS01220 IPR033248 Transketolase, C-terminal domain CL55_RS01220 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CL55_RS01220 IPR005478 Transketolase, bacterial-like CL55_RS01220 IPR033247 Transketolase family CL55_RS01220 IPR005475 Transketolase-like, pyrimidine-binding domain CL55_RS01220 IPR005474 Transketolase, N-terminal CL55_RS01220 IPR029061 Thiamin diphosphate-binding fold CL55_RS01225 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CL55_RS01225 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CL55_RS01225 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CL55_RS01225 IPR036291 NAD(P)-binding domain superfamily CL55_RS01225 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CL55_RS01225 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CL55_RS01230 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS01230 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS01230 IPR002481 Ferric-uptake regulator CL55_RS01235 IPR026592 Outer membrane protein assembly factor BamE CL55_RS01235 IPR037873 BamE-like CL55_RS01235 IPR007450 Lipoprotein SmpA/OmlA CL55_RS01240 IPR022663 Dihydrodipicolinate reductase, C-terminal CL55_RS01240 IPR022664 Dihydrodipicolinate reductase, conserved site CL55_RS01240 IPR023940 Dihydrodipicolinate reductase CL55_RS01240 IPR036291 NAD(P)-binding domain superfamily CL55_RS01240 IPR000846 Dihydrodipicolinate reductase, N-terminal CL55_RS01245 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CL55_RS01245 IPR002302 Leucine-tRNA ligase CL55_RS01245 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CL55_RS01245 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS01245 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS01245 IPR025709 Leucyl-tRNA synthetase, editing domain CL55_RS01245 IPR002300 Aminoacyl-tRNA synthetase, class Ia CL55_RS01245 IPR015413 Methionyl/Leucyl tRNA synthetase CL55_RS01245 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CL55_RS01260 IPR015590 Aldehyde dehydrogenase domain CL55_RS01260 IPR000965 GPR domain CL55_RS01260 IPR012134 Glutamate-5-semialdehyde dehydrogenase CL55_RS01260 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site CL55_RS01260 IPR016162 Aldehyde dehydrogenase, N-terminal CL55_RS01260 IPR016163 Aldehyde dehydrogenase, C-terminal CL55_RS01260 IPR016161 Aldehyde/histidinol dehydrogenase CL55_RS01265 IPR005265 Protoporphyrinogen oxidase HemJ-like CL55_RS01270 IPR000241 Putative RNA methylase domain CL55_RS01270 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CL55_RS01270 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS01270 IPR004114 THUMP domain CL55_RS01275 IPR024922 Rubredoxin CL55_RS01275 IPR024935 Rubredoxin domain CL55_RS01275 IPR018527 Rubredoxin, iron-binding site CL55_RS01275 IPR024934 Rubredoxin-like domain CL55_RS01280 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS01280 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS01280 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS01280 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CL55_RS01280 IPR005814 Aminotransferase class-III CL55_RS01285 IPR029052 Metallo-dependent phosphatase-like CL55_RS01285 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CL55_RS01285 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) CL55_RS01290 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS01290 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal CL55_RS01290 IPR006050 DNA photolyase, N-terminal CL55_RS01290 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain CL55_RS01290 IPR002081 Cryptochrome/DNA photolyase class 1 CL55_RS01290 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily CL55_RS01290 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily CL55_RS01300 IPR003774 Protein of unknown function UPF0301 CL55_RS01305 IPR037027 YqgF/RNase H-like domain superfamily CL55_RS01305 IPR005227 Putative pre-16S rRNA nuclease CL55_RS01305 IPR012337 Ribonuclease H-like superfamily CL55_RS01305 IPR006641 YqgF/RNase H-like domain CL55_RS01310 IPR023050 Bifunctional protein PyrR CL55_RS01310 IPR029057 Phosphoribosyltransferase-like CL55_RS01310 IPR000836 Phosphoribosyltransferase domain CL55_RS01315 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CL55_RS01315 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CL55_RS01315 IPR002082 Aspartate carbamoyltransferase CL55_RS01315 IPR006130 Aspartate/ornithine carbamoyltransferase CL55_RS01315 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CL55_RS01345 IPR036291 NAD(P)-binding domain superfamily CL55_RS01345 IPR005886 UDP-glucose 4-epimerase CL55_RS01345 IPR016040 NAD(P)-binding domain CL55_RS01360 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CL55_RS01360 IPR001296 Glycosyl transferase, family 1 CL55_RS01370 IPR005888 dTDP-glucose 4,6-dehydratase CL55_RS01370 IPR016040 NAD(P)-binding domain CL55_RS01370 IPR036291 NAD(P)-binding domain superfamily CL55_RS01375 IPR005913 dTDP-4-dehydrorhamnose reductase family CL55_RS01375 IPR036291 NAD(P)-binding domain superfamily CL55_RS01375 IPR029903 RmlD-like substrate binding domain CL55_RS01380 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS01380 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form CL55_RS01380 IPR005835 Nucleotidyl transferase domain CL55_RS01385 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related CL55_RS01385 IPR014710 RmlC-like jelly roll fold CL55_RS01385 IPR011051 RmlC-like cupin domain superfamily CL55_RS01390 IPR002201 Glycosyl transferase, family 9 CL55_RS01390 IPR011908 Lipopolysaccharide heptosyltransferase I CL55_RS01395 IPR003423 Outer membrane efflux protein CL55_RS01395 IPR010130 Type I secretion outer membrane protein, TolC CL55_RS01400 IPR003824 Undecaprenyl-diphosphatase UppP CL55_RS01410 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS01410 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type CL55_RS01425 IPR015590 Aldehyde dehydrogenase domain CL55_RS01425 IPR016163 Aldehyde dehydrogenase, C-terminal CL55_RS01425 IPR016161 Aldehyde/histidinol dehydrogenase CL55_RS01425 IPR016160 Aldehyde dehydrogenase, cysteine active site CL55_RS01425 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CL55_RS01425 IPR010102 Succinate semialdehyde dehydrogenase CL55_RS01425 IPR016162 Aldehyde dehydrogenase, N-terminal CL55_RS01430 IPR011605 NusB antitermination factor CL55_RS01430 IPR035926 NusB-like superfamily CL55_RS01430 IPR006027 NusB/RsmB/TIM44 CL55_RS01435 IPR002180 Lumazine/riboflavin synthase CL55_RS01435 IPR036467 Lumazine/riboflavin synthase superfamily CL55_RS01435 IPR034964 Lumazine synthase CL55_RS01440 IPR032677 GTP cyclohydrolase II CL55_RS01440 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB CL55_RS01440 IPR036144 RibA-like superfamily CL55_RS01440 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CL55_RS01460 IPR011549 Riboflavin-specific deaminase, C-terminal CL55_RS01460 IPR004794 Riboflavin biosynthesis protein RibD CL55_RS01460 IPR024072 Dihydrofolate reductase-like domain superfamily CL55_RS01460 IPR016193 Cytidine deaminase-like CL55_RS01460 IPR002125 Cytidine and deoxycytidylate deaminase domain CL55_RS01460 IPR016192 APOBEC/CMP deaminase, zinc-binding CL55_RS01460 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CL55_RS01465 IPR001783 Lumazine-binding protein CL55_RS01465 IPR026017 Lumazine-binding domain CL55_RS01465 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CL55_RS01465 IPR017938 Riboflavin synthase-like beta-barrel CL55_RS01470 IPR018317 Queuosine biosynthesis protein QueC CL55_RS01470 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS01480 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal CL55_RS01480 IPR039001 Peptidoglycan-associated lipoprotein CL55_RS01480 IPR036737 OmpA-like domain superfamily CL55_RS01480 IPR006690 Outer membrane protein, OmpA-like, conserved site CL55_RS01480 IPR006665 OmpA-like domain CL55_RS01480 IPR006664 Outer membrane protein, bacterial CL55_RS01485 IPR011659 WD40-like Beta Propeller CL55_RS01485 IPR011042 Six-bladed beta-propeller, TolB-like CL55_RS01485 IPR014167 Tol-Pal system protein TolB CL55_RS01485 IPR007195 TolB, N-terminal CL55_RS01485 IPR036752 TolB, N-terminal domain superfamily CL55_RS01495 IPR014170 TonB system transport protein ExbD type-1 CL55_RS01495 IPR003400 Biopolymer transport protein ExbD/TolR CL55_RS01500 IPR002898 MotA/TolQ/ExbB proton channel CL55_RS01500 IPR014163 Tol-Pal system, TolQ CL55_RS01505 IPR039429 Serine hydroxymethyltransferase-like domain CL55_RS01505 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS01505 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS01505 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site CL55_RS01505 IPR001085 Serine hydroxymethyltransferase CL55_RS01505 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS01510 IPR003796 Ribonucleotide reductase regulator NrdR-like CL55_RS01510 IPR005144 ATP-cone domain CL55_RS01515 IPR006368 GDP-mannose 4,6-dehydratase CL55_RS01515 IPR036291 NAD(P)-binding domain superfamily CL55_RS01515 IPR016040 NAD(P)-binding domain CL55_RS01520 IPR000850 Adenylate kinase/UMP-CMP kinase CL55_RS01520 IPR006259 Adenylate kinase subfamily CL55_RS01520 IPR007862 Adenylate kinase, active site lid domain CL55_RS01520 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS01520 IPR033690 Adenylate kinase, conserved site CL55_RS01525 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS01525 IPR003329 Acylneuraminate cytidylyltransferase CL55_RS01525 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase CL55_RS01530 IPR005651 Trm112-like CL55_RS01535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS01535 IPR003758 Tetraacyldisaccharide 4'-kinase CL55_RS01540 IPR003400 Biopolymer transport protein ExbD/TolR CL55_RS01550 IPR020579 Exonuclease VII, large subunit, C-terminal CL55_RS01550 IPR025824 OB-fold nucleic acid binding domain CL55_RS01550 IPR003753 Exonuclease VII, large subunit CL55_RS01555 IPR006094 FAD linked oxidase, N-terminal CL55_RS01555 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily CL55_RS01555 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal CL55_RS01555 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase CL55_RS01555 IPR016166 FAD-binding domain, PCMH-type CL55_RS01555 IPR016167 FAD-binding, type PCMH, subdomain 1 CL55_RS01555 IPR016169 FAD-binding, type PCMH, subdomain 2 CL55_RS01555 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS01560 IPR036183 YajQ-like superfamily CL55_RS01560 IPR035570 UPF0234, N-terminal CL55_RS01560 IPR035571 UPF0234-like, C-terminal CL55_RS01560 IPR007551 Protein of unknown function DUF520 CL55_RS01565 IPR002104 Integrase, catalytic domain CL55_RS01565 IPR004107 Integrase, SAM-like, N-terminal CL55_RS01565 IPR023009 Tyrosine recombinase XerC/XerD CL55_RS01565 IPR011932 Tyrosine recombinase XerD CL55_RS01565 IPR010998 Integrase/recombinase, N-terminal CL55_RS01565 IPR013762 Integrase-like, catalytic domain superfamily CL55_RS01565 IPR011010 DNA breaking-rejoining enzyme, catalytic core CL55_RS01570 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY CL55_RS01580 IPR001474 GTP cyclohydrolase I CL55_RS01580 IPR018234 GTP cyclohydrolase I, conserved site CL55_RS01580 IPR020602 GTP cyclohydrolase I domain CL55_RS01600 IPR036291 NAD(P)-binding domain superfamily CL55_RS01600 IPR006368 GDP-mannose 4,6-dehydratase CL55_RS01600 IPR016040 NAD(P)-binding domain CL55_RS01605 IPR011051 RmlC-like cupin domain superfamily CL55_RS01605 IPR005835 Nucleotidyl transferase domain CL55_RS01605 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal CL55_RS01605 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase CL55_RS01605 IPR014710 RmlC-like jelly roll fold CL55_RS01605 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS01610 IPR036291 NAD(P)-binding domain superfamily CL55_RS01610 IPR016040 NAD(P)-binding domain CL55_RS01610 IPR006368 GDP-mannose 4,6-dehydratase CL55_RS01635 IPR003696 Carbamoyltransferase CL55_RS01635 IPR031730 Carbamoyltransferase, C-terminal CL55_RS01635 IPR038152 Carbamoyltransferase, C-terminal domain superfamily CL55_RS01645 IPR036291 NAD(P)-binding domain superfamily CL55_RS01645 IPR001509 NAD-dependent epimerase/dehydratase CL55_RS01645 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase CL55_RS01675 IPR011527 ABC transporter type 1, transmembrane domain CL55_RS01675 IPR036640 ABC transporter type 1, transmembrane domain superfamily CL55_RS01675 IPR039421 Type I protein exporter CL55_RS01675 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS01675 IPR017871 ABC transporter, conserved site CL55_RS01675 IPR003593 AAA+ ATPase domain CL55_RS01675 IPR003439 ABC transporter-like CL55_RS01680 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CL55_RS01680 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain CL55_RS01680 IPR036291 NAD(P)-binding domain superfamily CL55_RS01690 IPR036291 NAD(P)-binding domain superfamily CL55_RS01690 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS01690 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CL55_RS01705 IPR003362 Bacterial sugar transferase CL55_RS01710 IPR036291 NAD(P)-binding domain superfamily CL55_RS01710 IPR001509 NAD-dependent epimerase/dehydratase CL55_RS01715 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain CL55_RS01715 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like CL55_RS01755 IPR036291 NAD(P)-binding domain superfamily CL55_RS01755 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS01755 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS01755 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CL55_RS01760 IPR001279 Metallo-beta-lactamase CL55_RS01760 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS01765 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CL55_RS01765 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CL55_RS01765 IPR016039 Thiolase-like CL55_RS01765 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CL55_RS01780 IPR036736 ACP-like superfamily CL55_RS01780 IPR003231 Acyl carrier protein (ACP) CL55_RS01780 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CL55_RS01780 IPR009081 Phosphopantetheine binding ACP domain CL55_RS01780 IPR006162 Phosphopantetheine attachment site CL55_RS01785 IPR020845 AMP-binding, conserved site CL55_RS01785 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS01785 IPR000873 AMP-dependent synthetase/ligase CL55_RS01785 IPR042099 AMP-dependent synthetase-like superfamily CL55_RS01800 IPR004713 Calcium/proton exchanger CL55_RS01800 IPR004837 Sodium/calcium exchanger membrane region CL55_RS01810 IPR000878 Tetrapyrrole methylase CL55_RS01810 IPR035996 Tetrapyrrole methylase superfamily CL55_RS01810 IPR014777 Tetrapyrrole methylase, subdomain 1 CL55_RS01810 IPR014776 Tetrapyrrole methylase, subdomain 2 CL55_RS01810 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CL55_RS01810 IPR006366 Uroporphyrin-III C-methyltransferase CL55_RS01835 IPR006680 Amidohydrolase-related CL55_RS01835 IPR032466 Metal-dependent hydrolase CL55_RS01840 IPR042100 Bordetella uptake gene, domain 1 CL55_RS01840 IPR005064 Bordetella uptake gene CL55_RS01845 IPR029058 Alpha/Beta hydrolase fold CL55_RS01845 IPR000073 Alpha/beta hydrolase fold-1 CL55_RS01845 IPR019913 Pyrimidine utilisation protein RutD CL55_RS01855 IPR023153 PSPTO4464-like domain superfamily CL55_RS01855 IPR006839 Ribosome-associated, YjgA CL55_RS01860 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS01860 IPR012132 Glucose-methanol-choline oxidoreductase CL55_RS01860 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal CL55_RS01860 IPR027424 Glucose Oxidase, domain 2 CL55_RS01860 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal CL55_RS01870 IPR002781 Transmembrane protein TauE-like CL55_RS01875 IPR001279 Metallo-beta-lactamase CL55_RS01875 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS01880 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS01880 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS01880 IPR001845 HTH ArsR-type DNA-binding domain CL55_RS01880 IPR011991 ArsR-like helix-turn-helix domain CL55_RS01915 IPR008258 Transglycosylase SLT domain 1 CL55_RS01915 IPR000189 Prokaryotic transglycosylase, active site CL55_RS01915 IPR023664 Murein transglycosylase-C CL55_RS01915 IPR024570 Murein transglycosylase-C, N-terminal CL55_RS01915 IPR023346 Lysozyme-like domain superfamily CL55_RS01920 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CL55_RS01930 IPR036259 MFS transporter superfamily CL55_RS01930 IPR020846 Major facilitator superfamily domain CL55_RS01930 IPR011701 Major facilitator superfamily CL55_RS01935 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric CL55_RS01940 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily CL55_RS01940 IPR000572 Oxidoreductase, molybdopterin-binding domain CL55_RS01940 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS01940 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP CL55_RS01945 IPR013130 Ferric reductase transmembrane component-like domain CL55_RS01945 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ CL55_RS01950 IPR022271 Lipocalin, ApoD type CL55_RS01950 IPR012674 Calycin CL55_RS01950 IPR002446 Lipocalin, bacterial CL55_RS01950 IPR000566 Lipocalin/cytosolic fatty-acid binding domain CL55_RS01950 IPR022272 Lipocalin family conserved site CL55_RS01965 IPR036291 NAD(P)-binding domain superfamily CL55_RS01965 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS01965 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS01975 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CL55_RS01975 IPR020103 Pseudouridine synthase, catalytic domain superfamily CL55_RS01975 IPR002942 RNA-binding S4 domain CL55_RS01975 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CL55_RS01975 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CL55_RS01975 IPR006145 Pseudouridine synthase, RsuA/RluA CL55_RS01975 IPR036986 RNA-binding S4 domain superfamily CL55_RS01980 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily CL55_RS01980 IPR001533 Pterin 4 alpha carbinolamine dehydratase CL55_RS01995 IPR016181 Acyl-CoA N-acyltransferase CL55_RS01995 IPR036291 NAD(P)-binding domain superfamily CL55_RS01995 IPR000182 GNAT domain CL55_RS01995 IPR003781 CoA-binding CL55_RS01995 IPR016102 Succinyl-CoA synthetase-like CL55_RS01995 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain CL55_RS01995 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS01995 IPR011761 ATP-grasp fold CL55_RS02010 IPR015391 SurA N-terminal CL55_RS02010 IPR023034 Peptidyl-prolyl isomerase SurA CL55_RS02010 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CL55_RS02010 IPR027304 Trigger factor/SurA domain superfamily CL55_RS02025 IPR006143 RND efflux pump, membrane fusion protein CL55_RS02025 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CL55_RS02025 IPR005695 Cobalt/zinc/cadmium resistance protein CzcB CL55_RS02030 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CL55_RS02030 IPR001036 Acriflavin resistance protein CL55_RS02030 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA CL55_RS02035 IPR002332 Nitrogen regulatory protein P-II, urydylation site CL55_RS02035 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CL55_RS02035 IPR017918 Nitrogen regulatory protein PII, conserved site CL55_RS02035 IPR002187 Nitrogen regulatory protein PII CL55_RS02035 IPR011322 Nitrogen regulatory PII-like, alpha/beta CL55_RS02040 IPR037523 Vicinal oxygen chelate (VOC) domain CL55_RS02040 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CL55_RS02040 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CL55_RS02050 IPR016166 FAD-binding domain, PCMH-type CL55_RS02050 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS02050 IPR006094 FAD linked oxidase, N-terminal CL55_RS02050 IPR016164 FAD-linked oxidase-like, C-terminal CL55_RS02050 IPR004113 FAD-linked oxidase, C-terminal CL55_RS02050 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS02050 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS02050 IPR009051 Alpha-helical ferredoxin CL55_RS02105 IPR035919 EAL domain superfamily CL55_RS02105 IPR000160 GGDEF domain CL55_RS02105 IPR005330 MHYT domain CL55_RS02105 IPR001633 EAL domain CL55_RS02105 IPR029787 Nucleotide cyclase CL55_RS02110 IPR007634 RNA polymerase sigma factor 54, DNA-binding CL55_RS02110 IPR000394 RNA polymerase sigma factor 54 CL55_RS02110 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily CL55_RS02110 IPR007046 RNA polymerase sigma factor 54, core-binding domain CL55_RS02170 IPR013325 RNA polymerase sigma factor, region 2 CL55_RS02170 IPR013324 RNA polymerase sigma factor, region 3/4-like CL55_RS02170 IPR012845 RNA polymerase sigma factor, FliA/WhiG CL55_RS02170 IPR028617 RNA polymerase sigma factor FliA CL55_RS02170 IPR007627 RNA polymerase sigma-70 region 2 CL55_RS02170 IPR000943 RNA polymerase sigma-70 CL55_RS02170 IPR007630 RNA polymerase sigma-70 region 4 CL55_RS02170 IPR007624 RNA polymerase sigma-70 region 3 CL55_RS02170 IPR014284 RNA polymerase sigma-70 like domain CL55_RS02180 IPR003593 AAA+ ATPase domain CL55_RS02180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02180 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CL55_RS02180 IPR020006 Flagellar biosynthesis protein FlhF CL55_RS02185 IPR042193 FHIPEP, domain 3 CL55_RS02185 IPR042196 FHIPEP, domain 4 CL55_RS02185 IPR025505 FHIPEP conserved site CL55_RS02185 IPR042194 FHIPEP, domain 1 CL55_RS02185 IPR006301 Flagellar biosynthesis protein FlhA CL55_RS02185 IPR001712 Type III secretion system FHIPEP CL55_RS02200 IPR042187 Flagellin, C-terminal domain, subdomain 2 CL55_RS02200 IPR001492 Flagellin CL55_RS02200 IPR001029 Flagellin, D0/D1 domain CL55_RS02205 IPR005186 FlaG protein CL55_RS02205 IPR035924 FlaG-like superfamily CL55_RS02210 IPR010810 Flagellin hook, IN motif CL55_RS02210 IPR010809 Flagellar hook-associated protein 2, C-terminal CL55_RS02210 IPR003481 Flagellar hook-associated protein 2, N-terminal CL55_RS02210 IPR040026 Flagellar hook-associated protein 2 CL55_RS02225 IPR006136 Flagellar biosynthetic protein FlhB CL55_RS02225 IPR006135 Type III secretion system substrate exporter CL55_RS02225 IPR029025 Type III secretion system substrate exporter, C-terminal CL55_RS02230 IPR001624 Flagellar hook-basal body complex protein FliE CL55_RS02235 IPR001789 Signal transduction response regulator, receiver domain CL55_RS02235 IPR002078 RNA polymerase sigma factor 54 interaction domain CL55_RS02235 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CL55_RS02235 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CL55_RS02235 IPR025944 Sigma-54 interaction domain, conserved site CL55_RS02235 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02235 IPR009057 Homeobox-like domain superfamily CL55_RS02235 IPR011006 CheY-like superfamily CL55_RS02235 IPR003593 AAA+ ATPase domain CL55_RS02235 IPR029995 Transcriptional activator SfnR/FlbD CL55_RS02235 IPR002197 DNA binding HTH domain, Fis-type CL55_RS02240 IPR035965 PAS domain superfamily CL55_RS02240 IPR000014 PAS domain CL55_RS02240 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS02240 IPR005467 Histidine kinase domain CL55_RS02240 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS02240 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS02240 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS02240 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS02245 IPR006182 Secretory protein YscJ/FliF CL55_RS02245 IPR000067 Flagellar M-ring protein FliF CL55_RS02245 IPR013556 Flagellar M-ring C-terminal CL55_RS02250 IPR032779 Flagellar motor switch protein FliG, middle domain CL55_RS02250 IPR011002 Flagellar motor switch protein FliG, alpha-helical CL55_RS02250 IPR023087 Flagellar motor switch protein FliG, C-terminal CL55_RS02250 IPR000090 Flagellar motor switch protein FliG CL55_RS02250 IPR028263 Flagellar motor switch protein FliG, N-terminal domain CL55_RS02260 IPR005714 ATPase, type III secretion system, FliI/YscN CL55_RS02260 IPR003593 AAA+ ATPase domain CL55_RS02260 IPR020005 Flagellar export ATPase FliI, clade 1 CL55_RS02260 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CL55_RS02260 IPR032463 ATPase, type III secretion system, FliI CL55_RS02260 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CL55_RS02260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02260 IPR040627 T3SS EscN ATPase, C-terminal CL55_RS02280 IPR028976 CheC-like superfamily CL55_RS02280 IPR001689 Flagellar motor switch protein FliM CL55_RS02280 IPR036429 SpoA-like superfamily CL55_RS02280 IPR001543 Surface presentation of antigen (SpoA) CL55_RS02285 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb CL55_RS02285 IPR031576 Flagellar motor switch protein FliN, N-terminal CL55_RS02285 IPR012826 Flagellar motor switch FliN CL55_RS02285 IPR001543 Surface presentation of antigen (SpoA) CL55_RS02285 IPR036429 SpoA-like superfamily CL55_RS02290 IPR022781 Flagellar biosynthesis protein, FliO CL55_RS02295 IPR005838 Type III secretion system inner membrane P protein CL55_RS02295 IPR005837 Flagellar transport protein FliP CL55_RS02300 IPR002191 Bacterial export protein family 3 CL55_RS02300 IPR006305 Flagellar biosynthesis protein FliQ CL55_RS02315 IPR041891 Carbonic anhydrase, prokaryotic-like CL55_RS02315 IPR036398 Alpha carbonic anhydrase domain superfamily CL55_RS02315 IPR023561 Carbonic anhydrase, alpha-class CL55_RS02315 IPR018338 Carbonic anhydrase, alpha-class, conserved site CL55_RS02315 IPR001148 Alpha carbonic anhydrase domain CL55_RS02325 IPR001444 Flagellar basal body rod protein, N-terminal CL55_RS02325 IPR019776 Flagellar basal body rod protein, conserved site CL55_RS02325 IPR006300 Flagellar basal-body rod protein FlgB CL55_RS02330 IPR019776 Flagellar basal body rod protein, conserved site CL55_RS02330 IPR001444 Flagellar basal body rod protein, N-terminal CL55_RS02330 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CL55_RS02330 IPR006299 Flagellar basal-body rod protein FlgC CL55_RS02340 IPR037058 Flagellar hook protein FlgE superfamily CL55_RS02340 IPR019776 Flagellar basal body rod protein, conserved site CL55_RS02340 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CL55_RS02340 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CL55_RS02340 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CL55_RS02340 IPR001444 Flagellar basal body rod protein, N-terminal CL55_RS02340 IPR011491 Flagellar hook protein FlgE CL55_RS02345 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CL55_RS02345 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CL55_RS02345 IPR001444 Flagellar basal body rod protein, N-terminal CL55_RS02345 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CL55_RS02345 IPR019776 Flagellar basal body rod protein, conserved site CL55_RS02350 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CL55_RS02350 IPR012834 Flagellar basal-body rod FlgG CL55_RS02350 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CL55_RS02350 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CL55_RS02350 IPR019776 Flagellar basal body rod protein, conserved site CL55_RS02350 IPR001444 Flagellar basal body rod protein, N-terminal CL55_RS02355 IPR000527 Flagellar L-ring protein CL55_RS02360 IPR001782 Flagellar P-ring protein CL55_RS02370 IPR001444 Flagellar basal body rod protein, N-terminal CL55_RS02370 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CL55_RS02370 IPR002371 Flagellar hook-associated protein 1 CL55_RS02380 IPR002898 MotA/TolQ/ExbB proton channel CL55_RS02380 IPR022522 Flagellar motor stator, MotA CL55_RS02380 IPR000540 Flagellar motor protein MotA, conserved site CL55_RS02385 IPR006665 OmpA-like domain CL55_RS02385 IPR025713 Motility protein B, N-terminal domain CL55_RS02385 IPR036737 OmpA-like domain superfamily CL55_RS02405 IPR029025 Type III secretion system substrate exporter, C-terminal CL55_RS02405 IPR006136 Flagellar biosynthetic protein FlhB CL55_RS02405 IPR006135 Type III secretion system substrate exporter CL55_RS02445 IPR030374 Polyamine biosynthesis domain CL55_RS02445 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS02445 IPR001045 Spermidine/spermine synthases CL55_RS02525 IPR002109 Glutaredoxin CL55_RS02525 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CL55_RS02525 IPR012336 Thioredoxin-like fold CL55_RS02525 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS02525 IPR023753 FAD/NAD(P)-binding domain CL55_RS02525 IPR036249 Thioredoxin-like superfamily CL55_RS02525 IPR012081 Alkyl hydroperoxide reductase subunit F CL55_RS02530 IPR024706 Peroxiredoxin, AhpC-type CL55_RS02530 IPR017559 Alkyl hydroperoxide reductase subunit C CL55_RS02530 IPR019479 Peroxiredoxin, C-terminal CL55_RS02530 IPR036249 Thioredoxin-like superfamily CL55_RS02530 IPR013766 Thioredoxin domain CL55_RS02530 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CL55_RS02540 IPR024934 Rubredoxin-like domain CL55_RS02540 IPR009078 Ferritin-like superfamily CL55_RS02540 IPR012347 Ferritin-like CL55_RS02540 IPR003251 Rubrerythrin CL55_RS02540 IPR009040 Ferritin-like diiron domain CL55_RS02545 IPR009051 Alpha-helical ferredoxin CL55_RS02545 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS02545 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS02545 IPR004017 Cysteine-rich domain CL55_RS02545 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit CL55_RS02555 IPR005119 LysR, substrate-binding CL55_RS02555 IPR000847 Transcription regulator HTH, LysR CL55_RS02555 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS02555 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS02565 IPR017804 Methyltransferase EgtD-like CL55_RS02565 IPR019257 Histidine-specific methyltransferase, SAM-dependent CL55_RS02565 IPR032888 Histidine N-alpha-methyltransferase, Actinobacteria-type CL55_RS02565 IPR035094 Histidine N-alpha-methyltransferase CL55_RS02565 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS02570 IPR016188 PurM-like, N-terminal domain CL55_RS02570 IPR036676 PurM-like, C-terminal domain superfamily CL55_RS02570 IPR023061 Selenophosphate synthetase, class I CL55_RS02570 IPR036921 PurM-like, N-terminal domain superfamily CL55_RS02570 IPR004536 Selenophosphate synthetase CL55_RS02570 IPR010918 PurM-like, C-terminal domain CL55_RS02585 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS02585 IPR035906 MetI-like superfamily CL55_RS02590 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS02590 IPR013767 PAS fold CL55_RS02590 IPR035965 PAS domain superfamily CL55_RS02590 IPR000700 PAS-associated, C-terminal CL55_RS02590 IPR000014 PAS domain CL55_RS02590 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS02590 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS02590 IPR005467 Histidine kinase domain CL55_RS02590 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS02590 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS02605 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS02605 IPR021731 AMIN domain CL55_RS02605 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CL55_RS02610 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02610 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE CL55_RS02615 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS02615 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS02615 IPR013542 Domain of unknown function DUF1730 CL55_RS02615 IPR009051 Alpha-helical ferredoxin CL55_RS02615 IPR004453 Epoxyqueuosine reductase QueG CL55_RS02630 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS02630 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS02630 IPR004017 Cysteine-rich domain CL55_RS02630 IPR009051 Alpha-helical ferredoxin CL55_RS02630 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit CL55_RS02635 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS02635 IPR000524 Transcription regulator HTH, GntR CL55_RS02635 IPR011711 GntR, C-terminal CL55_RS02635 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS02635 IPR008920 Transcription regulator FadR/GntR, C-terminal CL55_RS02640 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase CL55_RS02640 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS02640 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS02640 IPR000192 Aminotransferase class V domain CL55_RS02640 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CL55_RS02640 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS02645 IPR038084 GlcG-like domain superfamily CL55_RS02645 IPR005624 Haem-degrading CL55_RS02650 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02650 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CL55_RS02650 IPR014014 RNA helicase, DEAD-box type, Q motif CL55_RS02650 IPR028622 ATP-dependent RNA helicase RhlE CL55_RS02650 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS02650 IPR001650 Helicase, C-terminal CL55_RS02650 IPR011545 DEAD/DEAH box helicase domain CL55_RS02655 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CL55_RS02655 IPR022380 Glutamyl-Q tRNA(Asp) synthetase CL55_RS02655 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CL55_RS02655 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS02660 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CL55_RS02660 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain CL55_RS02660 IPR004805 DNA polymerase III, alpha subunit CL55_RS02660 IPR040982 DNA polymerase III alpha subunit finger domain CL55_RS02660 IPR029460 DNA polymerase, helix-hairpin-helix motif CL55_RS02660 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CL55_RS02660 IPR016195 Polymerase/histidinol phosphatase-like CL55_RS02660 IPR004013 PHP domain CL55_RS02660 IPR003141 Polymerase/histidinol phosphatase, N-terminal CL55_RS02670 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS02670 IPR001173 Glycosyltransferase 2-like CL55_RS02675 IPR001173 Glycosyltransferase 2-like CL55_RS02675 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS02680 IPR003439 ABC transporter-like CL55_RS02680 IPR011527 ABC transporter type 1, transmembrane domain CL55_RS02680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02680 IPR017871 ABC transporter, conserved site CL55_RS02680 IPR011917 ABC transporter, lipid A export, MsbA CL55_RS02680 IPR036640 ABC transporter type 1, transmembrane domain superfamily CL55_RS02680 IPR003593 AAA+ ATPase domain CL55_RS02685 IPR012340 Nucleic acid-binding, OB-fold CL55_RS02685 IPR003029 S1 domain CL55_RS02685 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G CL55_RS02685 IPR022967 RNA-binding domain, S1 CL55_RS02685 IPR004659 Ribonuclease E/G CL55_RS02690 IPR029001 Inosine triphosphate pyrophosphatase-like CL55_RS02690 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein CL55_RS02695 IPR029028 Alpha/beta knot methyltransferases CL55_RS02695 IPR003742 RNA methyltransferase RlmH CL55_RS02695 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CL55_RS02700 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CL55_RS02705 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS02705 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase CL55_RS02705 IPR004821 Cytidyltransferase-like domain CL55_RS02710 IPR001260 Coproporphyrinogen III oxidase, aerobic CL55_RS02710 IPR018375 Coproporphyrinogen III oxidase, conserved site CL55_RS02710 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily CL55_RS02715 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CL55_RS02715 IPR011054 Rudiment single hybrid motif CL55_RS02715 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal CL55_RS02715 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily CL55_RS02715 IPR020560 Phosphoribosylglycinamide synthetase, C-domain CL55_RS02715 IPR016185 Pre-ATP-grasp domain superfamily CL55_RS02715 IPR000115 Phosphoribosylglycinamide synthetase CL55_RS02715 IPR011761 ATP-grasp fold CL55_RS02715 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS02720 IPR002876 Transcriptional regulator TACO1-like CL55_RS02720 IPR029072 YebC-like CL55_RS02720 IPR026564 Transcriptional regulator TACO1-like, domain 3 CL55_RS02720 IPR017856 Integrase-like, N-terminal CL55_RS02730 IPR000847 Transcription regulator HTH, LysR CL55_RS02730 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS02730 IPR005119 LysR, substrate-binding CL55_RS02730 IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain CL55_RS02730 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS02745 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B CL55_RS02745 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal CL55_RS02745 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal CL55_RS02745 IPR023042 Peptidase M17, leucine aminopeptidase CL55_RS02755 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt CL55_RS02765 IPR005064 Bordetella uptake gene CL55_RS02765 IPR042100 Bordetella uptake gene, domain 1 CL55_RS02770 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS02770 IPR020459 AMP-binding CL55_RS02770 IPR020845 AMP-binding, conserved site CL55_RS02770 IPR000873 AMP-dependent synthetase/ligase CL55_RS02770 IPR042099 AMP-dependent synthetase-like superfamily CL55_RS02775 IPR002781 Transmembrane protein TauE-like CL55_RS02790 IPR017871 ABC transporter, conserved site CL55_RS02790 IPR003593 AAA+ ATPase domain CL55_RS02790 IPR003439 ABC transporter-like CL55_RS02790 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02795 IPR000522 ABC transporter, permease protein, BtuC-like CL55_RS02795 IPR037294 ABC transporter, BtuC-like CL55_RS02805 IPR010916 TonB box, conserved site CL55_RS02805 IPR037066 TonB-dependent receptor, plug domain superfamily CL55_RS02805 IPR010101 TonB-dependent vitamin B12 transporter BtuB CL55_RS02805 IPR012910 TonB-dependent receptor, plug domain CL55_RS02805 IPR000531 TonB-dependent receptor-like, beta-barrel CL55_RS02805 IPR039426 Vitamin B12 transporter BtuB-like CL55_RS02805 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CL55_RS02815 IPR029061 Thiamin diphosphate-binding fold CL55_RS02815 IPR017660 Oxalyl-CoA decarboxylase CL55_RS02815 IPR012000 Thiamine pyrophosphate enzyme, central domain CL55_RS02815 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CL55_RS02815 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CL55_RS02815 IPR029035 DHS-like NAD/FAD-binding domain superfamily CL55_RS02820 IPR017659 Formyl-CoA:oxalate CoA-transferase CL55_RS02820 IPR003673 CoA-transferase family III CL55_RS02820 IPR023606 CoA-transferase family III domain superfamily CL55_RS02825 IPR023606 CoA-transferase family III domain superfamily CL55_RS02825 IPR017659 Formyl-CoA:oxalate CoA-transferase CL55_RS02825 IPR003673 CoA-transferase family III CL55_RS02830 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CL55_RS02830 IPR002376 Formyl transferase, N-terminal CL55_RS02830 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain CL55_RS02830 IPR037022 Formyl transferase, C-terminal domain superfamily CL55_RS02830 IPR005793 Formyl transferase, C-terminal CL55_RS02830 IPR005794 Methionyl-tRNA formyltransferase CL55_RS02830 IPR036477 Formyl transferase, N-terminal domain superfamily CL55_RS02830 IPR011034 Formyl transferase-like, C-terminal domain superfamily CL55_RS02835 IPR004821 Cytidyltransferase-like domain CL55_RS02835 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS02835 IPR003721 Pantoate-beta-alanine ligase CL55_RS02835 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain CL55_RS02840 IPR003768 Segregation and condensation protein A CL55_RS02850 IPR029038 Methionyl-tRNA synthetase, Zn-domain CL55_RS02850 IPR015413 Methionyl/Leucyl tRNA synthetase CL55_RS02850 IPR014758 Methionyl-tRNA synthetase CL55_RS02850 IPR023458 Methionine-tRNA ligase, type 1 CL55_RS02850 IPR012340 Nucleic acid-binding, OB-fold CL55_RS02850 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS02850 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal CL55_RS02850 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain CL55_RS02850 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS02850 IPR002547 tRNA-binding domain CL55_RS02850 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CL55_RS02850 IPR033911 Methioninyl-tRNA synthetase core domain CL55_RS02855 IPR016193 Cytidine deaminase-like CL55_RS02855 IPR003786 Sulfur carrier protein FdhD CL55_RS02860 IPR029054 dUTPase-like CL55_RS02860 IPR036157 dUTPase-like superfamily CL55_RS02860 IPR033704 dUTPase, trimeric CL55_RS02860 IPR011962 dCTP deaminase CL55_RS02865 IPR000310 Orn/Lys/Arg decarboxylase, major domain CL55_RS02865 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal CL55_RS02865 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS02865 IPR011193 Ornithine/lysine/arginine decarboxylase CL55_RS02865 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS02865 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal CL55_RS02865 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily CL55_RS02865 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS02880 IPR022761 Fumarate lyase, N-terminal CL55_RS02880 IPR008948 L-Aspartase-like CL55_RS02880 IPR029419 Argininosuccinate lyase, C-terminal CL55_RS02880 IPR020557 Fumarate lyase, conserved site CL55_RS02880 IPR024083 Fumarase/histidase, N-terminal CL55_RS02880 IPR000362 Fumarate lyase family CL55_RS02880 IPR009049 Argininosuccinate lyase CL55_RS02885 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site CL55_RS02885 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily CL55_RS02885 IPR022417 Porphobilinogen deaminase, N-terminal CL55_RS02885 IPR022418 Porphobilinogen deaminase, C-terminal CL55_RS02885 IPR000860 Porphobilinogen deaminase CL55_RS02890 IPR039793 Uroporphyrinogen-III synthase CL55_RS02890 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase CL55_RS02890 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily CL55_RS02895 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CL55_RS02895 IPR007440 Chorismate--pyruvate lyase CL55_RS02900 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CL55_RS02900 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02900 IPR014014 RNA helicase, DEAD-box type, Q motif CL55_RS02900 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS02900 IPR001650 Helicase, C-terminal CL55_RS02900 IPR028622 ATP-dependent RNA helicase RhlE CL55_RS02900 IPR011545 DEAD/DEAH box helicase domain CL55_RS02905 IPR004778 Homoserine/Threonine efflux protein CL55_RS02905 IPR001123 Amino acid exporter protein, LeuE-type CL55_RS02910 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CL55_RS02910 IPR015590 Aldehyde dehydrogenase domain CL55_RS02910 IPR016162 Aldehyde dehydrogenase, N-terminal CL55_RS02910 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CL55_RS02910 IPR016161 Aldehyde/histidinol dehydrogenase CL55_RS02910 IPR016163 Aldehyde dehydrogenase, C-terminal CL55_RS02915 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily CL55_RS02915 IPR002569 Peptide methionine sulphoxide reductase MsrA CL55_RS02920 IPR000659 Pyridoxamine 5'-phosphate oxidase CL55_RS02920 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative CL55_RS02920 IPR012349 FMN-binding split barrel CL55_RS02920 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site CL55_RS02920 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal CL55_RS02925 IPR000594 THIF-type NAD/FAD binding fold CL55_RS02925 IPR035985 Ubiquitin-activating enzyme CL55_RS02930 IPR004841 Amino acid permease/ SLC12A domain CL55_RS02930 IPR004840 Amino acid permease, conserved site CL55_RS02935 IPR008141 Alanine dehydrogenase CL55_RS02935 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 CL55_RS02935 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CL55_RS02935 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CL55_RS02935 IPR036291 NAD(P)-binding domain superfamily CL55_RS02940 IPR001727 Gdt1 family CL55_RS02945 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase CL55_RS02945 IPR042097 Aminopeptidase N-like , N-terminal CL55_RS02945 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily CL55_RS02945 IPR014782 Peptidase M1, membrane alanine aminopeptidase CL55_RS02945 IPR012779 Peptidase M1, alanyl aminopeptidase CL55_RS02945 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily CL55_RS02945 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold CL55_RS02945 IPR027268 Peptidase M4/M1, CTD superfamily CL55_RS02945 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal CL55_RS02950 IPR000146 Fructose-1,6-bisphosphatase class 1 CL55_RS02950 IPR028343 Fructose-1,6-bisphosphatase CL55_RS02950 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal CL55_RS02955 IPR013651 ATP-grasp fold, RimK-type CL55_RS02955 IPR011810 Cyanophycin synthetase CL55_RS02955 IPR011761 ATP-grasp fold CL55_RS02955 IPR013221 Mur ligase, central CL55_RS02955 IPR036565 Mur-like, catalytic domain superfamily CL55_RS02955 IPR004101 Mur ligase, C-terminal CL55_RS02955 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS02955 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS02960 IPR004101 Mur ligase, C-terminal CL55_RS02960 IPR036565 Mur-like, catalytic domain superfamily CL55_RS02960 IPR011810 Cyanophycin synthetase CL55_RS02960 IPR013651 ATP-grasp fold, RimK-type CL55_RS02960 IPR013221 Mur ligase, central CL55_RS02960 IPR011761 ATP-grasp fold CL55_RS02960 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS02965 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS02965 IPR003439 ABC transporter-like CL55_RS02965 IPR017871 ABC transporter, conserved site CL55_RS02965 IPR036640 ABC transporter type 1, transmembrane domain superfamily CL55_RS02965 IPR011527 ABC transporter type 1, transmembrane domain CL55_RS02965 IPR003593 AAA+ ATPase domain CL55_RS02965 IPR011917 ABC transporter, lipid A export, MsbA CL55_RS02965 IPR039421 Type I protein exporter CL55_RS02975 IPR042100 Bordetella uptake gene, domain 1 CL55_RS02975 IPR005064 Bordetella uptake gene CL55_RS02985 IPR002823 Protein of unknown function DUF112, transmembrane CL55_RS02995 IPR010917 TonB-dependent receptor, conserved site CL55_RS02995 IPR010101 TonB-dependent vitamin B12 transporter BtuB CL55_RS02995 IPR039426 Vitamin B12 transporter BtuB-like CL55_RS02995 IPR012910 TonB-dependent receptor, plug domain CL55_RS02995 IPR010916 TonB box, conserved site CL55_RS02995 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CL55_RS02995 IPR000531 TonB-dependent receptor-like, beta-barrel CL55_RS02995 IPR037066 TonB-dependent receptor, plug domain superfamily CL55_RS03015 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site CL55_RS03015 IPR037237 IlvD/EDD, N-terminal domain CL55_RS03015 IPR042096 Dihydroxy-acid dehydratase, C-terminal CL55_RS03015 IPR004404 Dihydroxy-acid dehydratase CL55_RS03015 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase CL55_RS03020 IPR016032 Signal transduction response regulator, C-terminal effector CL55_RS03020 IPR000792 Transcription regulator LuxR, C-terminal CL55_RS03020 IPR001789 Signal transduction response regulator, receiver domain CL55_RS03020 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS03020 IPR011006 CheY-like superfamily CL55_RS03030 IPR011322 Nitrogen regulatory PII-like, alpha/beta CL55_RS03030 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CL55_RS03030 IPR017918 Nitrogen regulatory protein PII, conserved site CL55_RS03030 IPR002187 Nitrogen regulatory protein PII CL55_RS03030 IPR002332 Nitrogen regulatory protein P-II, urydylation site CL55_RS03035 IPR036526 Carbon-nitrogen hydrolase superfamily CL55_RS03035 IPR014445 Glutamine-dependent NAD(+) synthetase CL55_RS03035 IPR022310 NAD/GMP synthase CL55_RS03035 IPR003694 NAD(+) synthetase CL55_RS03035 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS03035 IPR003010 Carbon-nitrogen hydrolase CL55_RS03040 IPR036649 Inorganic pyrophosphatase superfamily CL55_RS03040 IPR008162 Inorganic pyrophosphatase CL55_RS03055 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS03055 IPR023753 FAD/NAD(P)-binding domain CL55_RS03055 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CL55_RS03055 IPR005982 Thioredoxin reductase CL55_RS03060 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS03060 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS03060 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03060 IPR018541 FtsK gamma domain CL55_RS03060 IPR025199 DNA translocase FtsK, 4TM region CL55_RS03060 IPR041027 FtsK alpha domain CL55_RS03060 IPR002543 FtsK domain CL55_RS03065 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria CL55_RS03065 IPR004564 Outer membrane lipoprotein carrier protein LolA-like CL55_RS03065 IPR029046 Lipoprotein localisation LolA/LolB/LppX CL55_RS03070 IPR006195 Aminoacyl-tRNA synthetase, class II CL55_RS03070 IPR033729 Serine-tRNA ligase catalytic core domain CL55_RS03070 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CL55_RS03070 IPR002317 Serine-tRNA ligase, type1 CL55_RS03070 IPR015866 Serine-tRNA synthetase, type1, N-terminal CL55_RS03070 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily CL55_RS03070 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CL55_RS03085 IPR018152 Superoxide dismutase, copper/zinc, binding site CL55_RS03085 IPR001424 Superoxide dismutase, copper/zinc binding domain CL55_RS03085 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily CL55_RS03085 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone CL55_RS03095 IPR003425 CCB3/YggT CL55_RS03110 IPR018234 GTP cyclohydrolase I, conserved site CL55_RS03110 IPR020602 GTP cyclohydrolase I domain CL55_RS03110 IPR001474 GTP cyclohydrolase I CL55_RS03115 IPR000889 Glutathione peroxidase CL55_RS03115 IPR029759 Glutathione peroxidase active site CL55_RS03115 IPR029760 Glutathione peroxidase conserved site CL55_RS03115 IPR036249 Thioredoxin-like superfamily CL55_RS03120 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA CL55_RS03120 IPR003439 ABC transporter-like CL55_RS03120 IPR003593 AAA+ ATPase domain CL55_RS03120 IPR008995 Molybdate/tungstate binding, C-terminal CL55_RS03120 IPR013611 Transport-associated OB, type 2 CL55_RS03120 IPR017871 ABC transporter, conserved site CL55_RS03120 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03120 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit CL55_RS03125 IPR035906 MetI-like superfamily CL55_RS03125 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS03130 IPR026045 Ferric binding protein CL55_RS03155 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV CL55_RS03170 IPR007236 SlyX CL55_RS03180 IPR036661 Luciferase-like domain superfamily CL55_RS03180 IPR011251 Luciferase-like domain CL55_RS03180 IPR019949 Luciferase family oxidoreductase, group 1 CL55_RS03190 IPR011335 Restriction endonuclease type II-like CL55_RS03190 IPR009822 YaeQ CL55_RS03190 IPR038590 YaeQ superfamily CL55_RS03195 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS03195 IPR028348 FAD dependent protein CL55_RS03200 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CL55_RS03200 IPR003593 AAA+ ATPase domain CL55_RS03200 IPR017871 ABC transporter, conserved site CL55_RS03200 IPR032781 ABC-transporter extension domain CL55_RS03200 IPR032524 ABC transporter Uup, C-terminal CL55_RS03200 IPR003439 ABC transporter-like CL55_RS03200 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03205 IPR003140 Phospholipase/carboxylesterase/thioesterase CL55_RS03205 IPR029058 Alpha/Beta hydrolase fold CL55_RS03210 IPR022835 Chaperone modulatory protein CbpM CL55_RS03215 IPR023859 DNA-binding protein, curved-DNA CL55_RS03215 IPR002939 Chaperone DnaJ, C-terminal CL55_RS03215 IPR001623 DnaJ domain CL55_RS03215 IPR018253 DnaJ domain, conserved site CL55_RS03215 IPR008971 HSP40/DnaJ peptide-binding CL55_RS03215 IPR036869 Chaperone J-domain superfamily CL55_RS03220 IPR007392 D-galactarate/Altronate dehydratase, C-terminal CL55_RS03220 IPR013974 SAF domain CL55_RS03220 IPR017654 Galactarate dehydratase GarD-like CL55_RS03225 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site CL55_RS03225 IPR036291 NAD(P)-binding domain superfamily CL55_RS03225 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CL55_RS03225 IPR022694 3-hydroxyacyl-CoA dehydrogenase CL55_RS03225 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site CL55_RS03225 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS03225 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS03225 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CL55_RS03230 IPR003829 Pirin, N-terminal domain CL55_RS03230 IPR012093 Pirin CL55_RS03230 IPR011051 RmlC-like cupin domain superfamily CL55_RS03230 IPR014710 RmlC-like jelly roll fold CL55_RS03230 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain CL55_RS03245 IPR023753 FAD/NAD(P)-binding domain CL55_RS03245 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS03245 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CL55_RS03245 IPR037092 Flavocytochrome c sulphide dehydrogenase, flavin-binding domain superfamily CL55_RS03245 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding CL55_RS03245 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CL55_RS03245 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS03270 IPR005064 Bordetella uptake gene CL55_RS03270 IPR042100 Bordetella uptake gene, domain 1 CL55_RS03275 IPR040442 Pyruvate kinase-like domain superfamily CL55_RS03275 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CL55_RS03275 IPR006475 Citrate lyase, beta subunit, bacteria CL55_RS03275 IPR011206 Citrate lyase beta subunit-like CL55_RS03275 IPR005000 HpcH/HpaI aldolase/citrate lyase domain CL55_RS03285 IPR029069 HotDog domain superfamily CL55_RS03295 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CL55_RS03295 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS03295 IPR036291 NAD(P)-binding domain superfamily CL55_RS03300 IPR030678 Peptide/nickel binding protein, MppA-type CL55_RS03300 IPR039424 Solute-binding protein family 5 CL55_RS03300 IPR000914 Solute-binding protein family 5 domain CL55_RS03305 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS03305 IPR035906 MetI-like superfamily CL55_RS03310 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS03310 IPR035906 MetI-like superfamily CL55_RS03310 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CL55_RS03315 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03315 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CL55_RS03315 IPR017871 ABC transporter, conserved site CL55_RS03315 IPR003439 ABC transporter-like CL55_RS03315 IPR003593 AAA+ ATPase domain CL55_RS03320 IPR038765 Papain-like cysteine peptidase superfamily CL55_RS03320 IPR000064 Endopeptidase, NLPC/P60 domain CL55_RS03325 IPR001423 Lysophospholipase patatin, conserved site CL55_RS03325 IPR002641 Patatin-like phospholipase domain CL55_RS03325 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CL55_RS03330 IPR005234 Chromosome segregation/condensation protein ScpB CL55_RS03330 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS03330 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS03335 IPR036986 RNA-binding S4 domain superfamily CL55_RS03335 IPR002942 RNA-binding S4 domain CL55_RS03335 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CL55_RS03335 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CL55_RS03335 IPR020103 Pseudouridine synthase, catalytic domain superfamily CL55_RS03335 IPR006145 Pseudouridine synthase, RsuA/RluA CL55_RS03340 IPR028989 Ribosome maturation factor RimP, N-terminal CL55_RS03340 IPR003728 Ribosome maturation factor RimP CL55_RS03340 IPR028998 Ribosome maturation factor RimP, C-terminal CL55_RS03340 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily CL55_RS03340 IPR035956 RimP, N-terminal domain superfamily CL55_RS03345 IPR030842 Transcription termination/antitermination protein NusA, bacterial CL55_RS03345 IPR012340 Nucleic acid-binding, OB-fold CL55_RS03345 IPR009019 K homology domain superfamily, prokaryotic type CL55_RS03345 IPR036555 NusA, N-terminal domain superfamily CL55_RS03345 IPR015946 K homology domain-like, alpha/beta CL55_RS03345 IPR003029 S1 domain CL55_RS03345 IPR013735 Transcription factor NusA, N-terminal CL55_RS03345 IPR004087 K Homology domain CL55_RS03345 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical CL55_RS03345 IPR010214 Transcription termination factor NusA, C-terminal duplication CL55_RS03345 IPR010213 Transcription termination factor NusA CL55_RS03345 IPR022967 RNA-binding domain, S1 CL55_RS03345 IPR025249 KH domain, NusA-like CL55_RS03350 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03350 IPR005225 Small GTP-binding protein domain CL55_RS03350 IPR009061 Putative DNA-binding domain superfamily CL55_RS03350 IPR013575 Initiation factor 2 associated domain, bacterial CL55_RS03350 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS03350 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CL55_RS03350 IPR006847 Translation initiation factor IF-2, N-terminal CL55_RS03350 IPR023115 Translation initiation factor IF- 2, domain 3 CL55_RS03350 IPR000795 Transcription factor, GTP-binding domain CL55_RS03350 IPR000178 Translation initiation factor aIF-2, bacterial-like CL55_RS03350 IPR015760 Translation initiation factor IF- 2 CL55_RS03355 IPR015946 K homology domain-like, alpha/beta CL55_RS03355 IPR000238 Ribosome-binding factor A CL55_RS03355 IPR023799 Ribosome-binding factor A domain superfamily CL55_RS03360 IPR014780 tRNA pseudouridine synthase II, TruB CL55_RS03360 IPR015947 PUA-like superfamily CL55_RS03360 IPR032819 tRNA pseudouridylate synthase B, C-terminal CL55_RS03360 IPR002501 Pseudouridine synthase II, N-terminal CL55_RS03360 IPR020103 Pseudouridine synthase, catalytic domain superfamily CL55_RS03360 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal CL55_RS03365 IPR035651 BipA, domain V CL55_RS03365 IPR035647 EF-G domain III/V-like CL55_RS03365 IPR000640 Elongation factor EFG, domain V-like CL55_RS03365 IPR004161 Translation elongation factor EFTu-like, domain 2 CL55_RS03365 IPR031157 Tr-type G domain, conserved site CL55_RS03365 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03365 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS03365 IPR005225 Small GTP-binding protein domain CL55_RS03365 IPR000795 Transcription factor, GTP-binding domain CL55_RS03365 IPR006298 GTP-binding protein TypA CL55_RS03365 IPR042116 GTP-binding protein TypA/BipA, C-terminal CL55_RS03370 IPR037027 YqgF/RNase H-like domain superfamily CL55_RS03370 IPR010994 RuvA domain 2-like CL55_RS03370 IPR022967 RNA-binding domain, S1 CL55_RS03370 IPR012337 Ribonuclease H-like superfamily CL55_RS03370 IPR012340 Nucleic acid-binding, OB-fold CL55_RS03370 IPR003029 S1 domain CL55_RS03370 IPR041692 HHH domain 9 CL55_RS03370 IPR018974 Tex-like protein, N-terminal CL55_RS03370 IPR006641 YqgF/RNase H-like domain CL55_RS03370 IPR032639 Tex protein, YqgF-like domain CL55_RS03370 IPR023319 Tex-like protein, HTH domain superfamily CL55_RS03370 IPR023323 Tex-like domain superfamily CL55_RS03380 IPR022907 VapC family CL55_RS03380 IPR002716 PIN domain CL55_RS03380 IPR029060 PIN-like domain superfamily CL55_RS03385 IPR005950 Molybdate ABC transporter, substrate-binding protein CL55_RS03390 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS03390 IPR018334 ArsR-type transcription regulator, HTH motif CL55_RS03390 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS03390 IPR001845 HTH ArsR-type DNA-binding domain CL55_RS03390 IPR011991 ArsR-like helix-turn-helix domain CL55_RS03395 IPR023485 Phosphotyrosine protein phosphatase I CL55_RS03395 IPR036196 Phosphotyrosine protein phosphatase I superfamily CL55_RS03395 IPR014064 Arsenate reductase ArsC CL55_RS03400 IPR004706 Arsenical-resistance protein Acr3 CL55_RS03400 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 CL55_RS03400 IPR038770 Sodium/solute symporter superfamily CL55_RS03405 IPR005025 NADPH-dependent FMN reductase-like CL55_RS03405 IPR029039 Flavoprotein-like superfamily CL55_RS03405 IPR014063 Arsenate resistance ArsH CL55_RS03415 IPR006016 UspA CL55_RS03415 IPR006015 Universal stress protein A family CL55_RS03415 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS03420 IPR002781 Transmembrane protein TauE-like CL55_RS03430 IPR004653 tRNA-dihydrouridine(20/20a) synthase CL55_RS03430 IPR035587 DUS-like, FMN-binding domain CL55_RS03430 IPR018517 tRNA-dihydrouridine synthase, conserved site CL55_RS03430 IPR001269 tRNA-dihydrouridine synthase CL55_RS03430 IPR013785 Aldolase-type TIM barrel CL55_RS03440 IPR016187 C-type lectin fold CL55_RS03440 IPR005532 Sulfatase-modifying factor enzyme CL55_RS03440 IPR042095 Sulfatase-modifying factor enzyme superfamily CL55_RS03445 IPR029491 Helicase Helix-turn-helix domain CL55_RS03445 IPR003593 AAA+ ATPase domain CL55_RS03445 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03445 IPR010285 DNA helicase Pif1-like CL55_RS03450 IPR022148 CopG antitoxin CL55_RS03465 IPR029055 Nucleophile aminohydrolases, N-terminal CL55_RS03470 IPR005064 Bordetella uptake gene CL55_RS03470 IPR042100 Bordetella uptake gene, domain 1 CL55_RS03475 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS03475 IPR005814 Aminotransferase class-III CL55_RS03475 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS03475 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS03485 IPR005538 LrgA/CidA family CL55_RS03485 IPR022957 Uncharacterised protein family UPF0299 CL55_RS03490 IPR002888 [2Fe-2S]-binding CL55_RS03490 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CL55_RS03490 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS03490 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS03490 IPR036884 [2Fe-2S]-binding domain superfamily CL55_RS03495 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CL55_RS03495 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CL55_RS03495 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CL55_RS03495 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CL55_RS03495 IPR036909 Cytochrome c-like domain superfamily CL55_RS03495 IPR009056 Cytochrome c-like domain CL55_RS03515 IPR036909 Cytochrome c-like domain superfamily CL55_RS03515 IPR009056 Cytochrome c-like domain CL55_RS03515 IPR025710 L-cysteine S-thiosulfotransferase subunit SoxA CL55_RS03520 IPR004810 Formyltetrahydrofolate deformylase CL55_RS03520 IPR036477 Formyl transferase, N-terminal domain superfamily CL55_RS03520 IPR002376 Formyl transferase, N-terminal CL55_RS03520 IPR002912 ACT domain CL55_RS03520 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain CL55_RS03535 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase CL55_RS03535 IPR029055 Nucleophile aminohydrolases, N-terminal CL55_RS03535 IPR014395 Penicillin/GL-7-ACA/AHL acylase CL55_RS03535 IPR023343 Penicillin amidase type, domain 1 CL55_RS03555 IPR003400 Biopolymer transport protein ExbD/TolR CL55_RS03560 IPR002898 MotA/TolQ/ExbB proton channel CL55_RS03570 IPR018187 Asp/Glu racemase, active site 1 CL55_RS03570 IPR033134 Asp/Glu racemase, active site 2 CL55_RS03570 IPR004391 Glutamate racemase CL55_RS03570 IPR015942 Asp/Glu/hydantoin racemase CL55_RS03570 IPR001920 Asp/Glu racemase CL55_RS03580 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain CL55_RS03580 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS03580 IPR020845 AMP-binding, conserved site CL55_RS03580 IPR000873 AMP-dependent synthetase/ligase CL55_RS03580 IPR042099 AMP-dependent synthetase-like superfamily CL55_RS03580 IPR011904 Acetate-CoA ligase CL55_RS03610 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site CL55_RS03610 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CL55_RS03610 IPR011537 NADH ubiquinone oxidoreductase, F subunit CL55_RS03610 IPR019554 Soluble ligand binding domain CL55_RS03610 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily CL55_RS03610 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain CL55_RS03610 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CL55_RS03615 IPR041925 Formate dehydrogenase H, molybdopterin-binding domain CL55_RS03615 IPR041924 Formate dehydrogenase H, N-terminal CL55_RS03615 IPR006478 Formate dehydrogenase, alpha subunit CL55_RS03615 IPR006657 Molybdopterin dinucleotide-binding domain CL55_RS03615 IPR006656 Molybdopterin oxidoreductase CL55_RS03615 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CL55_RS03615 IPR009010 Aspartate decarboxylase-like domain superfamily CL55_RS03615 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CL55_RS03615 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CL55_RS03620 IPR005288 L-aspartate oxidase CL55_RS03620 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS03620 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily CL55_RS03620 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CL55_RS03620 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CL55_RS03620 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CL55_RS03625 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal CL55_RS03625 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal CL55_RS03625 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily CL55_RS03625 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal CL55_RS03625 IPR013785 Aldolase-type TIM barrel CL55_RS03625 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD CL55_RS03625 IPR004393 Nicotinate-nucleotide pyrophosphorylase CL55_RS03630 IPR036094 Quinolinate synthetase A superfamily CL55_RS03630 IPR003473 Quinolinate synthetase A CL55_RS03630 IPR023513 Quinolinate synthase A, type 1 CL55_RS03635 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CL55_RS03635 IPR016066 Alpha-D-phosphohexomutase, conserved site CL55_RS03635 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CL55_RS03635 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CL55_RS03635 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CL55_RS03635 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CL55_RS03635 IPR005843 Alpha-D-phosphohexomutase, C-terminal CL55_RS03635 IPR005841 Alpha-D-phosphohexomutase superfamily CL55_RS03640 IPR018189 Phosphoglucose isomerase, conserved site CL55_RS03640 IPR001672 Phosphoglucose isomerase (PGI) CL55_RS03640 IPR035482 Phosphoglucose isomerase, SIS domain 2 CL55_RS03640 IPR035476 Phosphoglucose isomerase, SIS domain 1 CL55_RS03640 IPR023096 Phosphoglucose isomerase, C-terminal CL55_RS03645 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase CL55_RS03645 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS03645 IPR006076 FAD dependent oxidoreductase CL55_RS03645 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily CL55_RS03645 IPR031656 Alpha-glycerophosphate oxidase, C-terminal CL55_RS03655 IPR039379 Protoglobin, globin sensor domain CL55_RS03655 IPR009050 Globin-like superfamily CL55_RS03655 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS03655 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS03655 IPR012292 Globin/Protoglobin CL55_RS03655 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS03655 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS03655 IPR005467 Histidine kinase domain CL55_RS03655 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS03665 IPR015170 Protein of unknown function DUF1924 CL55_RS03665 IPR036909 Cytochrome c-like domain superfamily CL55_RS03665 IPR009056 Cytochrome c-like domain CL55_RS03675 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase CL55_RS03675 IPR016174 Di-haem cytochrome, transmembrane CL55_RS03675 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit CL55_RS03680 IPR036527 SCP2 sterol-binding domain superfamily CL55_RS03680 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily CL55_RS03680 IPR029229 Alkyl sulfatase, C-terminal CL55_RS03680 IPR029228 Alkyl sulfatase dimerisation domain CL55_RS03680 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS03680 IPR001279 Metallo-beta-lactamase CL55_RS03685 IPR003673 CoA-transferase family III CL55_RS03685 IPR023606 CoA-transferase family III domain superfamily CL55_RS03690 IPR005064 Bordetella uptake gene CL55_RS03690 IPR042100 Bordetella uptake gene, domain 1 CL55_RS03695 IPR012799 Fatty oxidation complex, alpha subunit FadB CL55_RS03695 IPR001753 Enoyl-CoA hydratase/isomerase CL55_RS03695 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CL55_RS03695 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS03695 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CL55_RS03695 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS03695 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CL55_RS03695 IPR036291 NAD(P)-binding domain superfamily CL55_RS03695 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site CL55_RS03700 IPR023404 Radical SAM, alpha/beta horseshoe CL55_RS03700 IPR004559 Heme chaperone HemW-like CL55_RS03700 IPR010723 HemN, C-terminal CL55_RS03700 IPR034505 Anaerobic coproporphyrinogen-III oxidase CL55_RS03700 IPR006638 Elp3/MiaB/NifB CL55_RS03700 IPR007197 Radical SAM CL55_RS03705 IPR020922 dITP/XTP pyrophosphatase CL55_RS03705 IPR029001 Inosine triphosphate pyrophosphatase-like CL55_RS03705 IPR002637 Ham1-like protein CL55_RS03710 IPR015847 Exoribonuclease, phosphorolytic domain 2 CL55_RS03710 IPR036345 Exoribonuclease, PH domain 2 superfamily CL55_RS03710 IPR027408 PNPase/RNase PH domain superfamily CL55_RS03710 IPR001247 Exoribonuclease, phosphorolytic domain 1 CL55_RS03710 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS03710 IPR002381 Ribonuclease PH, bacterial-type CL55_RS03710 IPR018336 Ribonuclease PH, conserved site CL55_RS03715 IPR013527 YicC-like, N-terminal CL55_RS03715 IPR005229 Conserved hypothetical protein CHP00255 CL55_RS03715 IPR013551 Domain of unknown function DUF1732 CL55_RS03720 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03720 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CL55_RS03720 IPR017665 Guanylate kinase CL55_RS03720 IPR008144 Guanylate kinase-like domain CL55_RS03725 IPR036161 RPB6/omega subunit-like superfamily CL55_RS03725 IPR012293 RNA polymerase subunit, RPB6/omega CL55_RS03725 IPR006110 RNA polymerase, subunit omega/K/RPB6 CL55_RS03725 IPR003716 DNA-directed RNA polymerase, omega subunit CL55_RS03730 IPR003607 HD/PDEase domain CL55_RS03730 IPR004811 RelA/SpoT family CL55_RS03730 IPR004095 TGS CL55_RS03730 IPR012676 TGS-like CL55_RS03730 IPR012675 Beta-grasp domain superfamily CL55_RS03730 IPR002912 ACT domain CL55_RS03730 IPR033655 RelA, TGS domain CL55_RS03730 IPR007685 RelA/SpoT CL55_RS03735 IPR028624 Transcription elongation factor GreA/GreB CL55_RS03735 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CL55_RS03735 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily CL55_RS03735 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CL55_RS03735 IPR006358 Transcription elongation factor GreB CL55_RS03735 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily CL55_RS03735 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CL55_RS03735 IPR023459 Transcription elongation factor GreA/GreB family CL55_RS03745 IPR003453 ABC transport permease subunit MlaE, Proteobacteria CL55_RS03745 IPR030802 ABC transporter permease MalE CL55_RS03750 IPR003593 AAA+ ATPase domain CL55_RS03750 IPR003439 ABC transporter-like CL55_RS03750 IPR017871 ABC transporter, conserved site CL55_RS03750 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS03750 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl CL55_RS03755 IPR003399 Mce/MlaD CL55_RS03765 IPR011283 Acetoacetyl-CoA reductase CL55_RS03765 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS03765 IPR036291 NAD(P)-binding domain superfamily CL55_RS03765 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS03770 IPR038766 Membrane component of ABC transporter, predicted CL55_RS03795 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CL55_RS03795 IPR000399 TPP-binding enzyme, conserved site CL55_RS03795 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CL55_RS03795 IPR012000 Thiamine pyrophosphate enzyme, central domain CL55_RS03795 IPR029061 Thiamin diphosphate-binding fold CL55_RS03795 IPR029035 DHS-like NAD/FAD-binding domain superfamily CL55_RS03795 IPR039368 Acetolactate synthase large subunit, TPP binding domain CL55_RS03795 IPR012846 Acetolactate synthase, large subunit, biosynthetic CL55_RS03800 IPR002912 ACT domain CL55_RS03800 IPR004789 Acetolactate synthase, small subunit CL55_RS03800 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal CL55_RS03800 IPR039557 AHAS, ACT domain CL55_RS03800 IPR019455 Acetolactate synthase, small subunit, C-terminal CL55_RS03805 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS03805 IPR013023 Ketol-acid reductoisomerase CL55_RS03805 IPR000506 Ketol-acid reductoisomerase, C-terminal CL55_RS03805 IPR014359 Ketol-acid reductoisomerase, prokaryotic CL55_RS03805 IPR036291 NAD(P)-binding domain superfamily CL55_RS03805 IPR013116 Ketol-acid reductoisomerase, N-terminal CL55_RS03810 IPR003817 Phosphatidylserine decarboxylase-related CL55_RS03810 IPR033175 Phosphatidylserine decarboxylase, archaeal-type CL55_RS03815 IPR000462 CDP-alcohol phosphatidyltransferase CL55_RS03815 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase CL55_RS03820 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain CL55_RS03820 IPR000891 Pyruvate carboxyltransferase CL55_RS03820 IPR005671 2-isopropylmalate synthase, bacterial-type CL55_RS03820 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily CL55_RS03820 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site CL55_RS03820 IPR013785 Aldolase-type TIM barrel CL55_RS03835 IPR009068 S15/NS1, RNA-binding CL55_RS03835 IPR005290 Ribosomal protein S15, bacterial-type CL55_RS03835 IPR000589 Ribosomal protein S15 CL55_RS03840 IPR003029 S1 domain CL55_RS03840 IPR022967 RNA-binding domain, S1 CL55_RS03840 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS03840 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily CL55_RS03840 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain CL55_RS03840 IPR012162 Polyribonucleotide nucleotidyltransferase CL55_RS03840 IPR012340 Nucleic acid-binding, OB-fold CL55_RS03840 IPR004088 K Homology domain, type 1 CL55_RS03840 IPR004087 K Homology domain CL55_RS03840 IPR015847 Exoribonuclease, phosphorolytic domain 2 CL55_RS03840 IPR001247 Exoribonuclease, phosphorolytic domain 1 CL55_RS03840 IPR027408 PNPase/RNase PH domain superfamily CL55_RS03840 IPR036345 Exoribonuclease, PH domain 2 superfamily CL55_RS03840 IPR036612 K Homology domain, type 1 superfamily CL55_RS03845 IPR014031 Beta-ketoacyl synthase, C-terminal CL55_RS03845 IPR036736 ACP-like superfamily CL55_RS03845 IPR001227 Acyl transferase domain superfamily CL55_RS03845 IPR011032 GroES-like superfamily CL55_RS03845 IPR013154 Alcohol dehydrogenase, N-terminal CL55_RS03845 IPR013149 Alcohol dehydrogenase, C-terminal CL55_RS03845 IPR009081 Phosphopantetheine binding ACP domain CL55_RS03845 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CL55_RS03845 IPR013968 Polyketide synthase, ketoreductase domain CL55_RS03845 IPR006162 Phosphopantetheine attachment site CL55_RS03845 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CL55_RS03845 IPR018201 Beta-ketoacyl synthase, active site CL55_RS03845 IPR020843 Polyketide synthase, enoylreductase domain CL55_RS03845 IPR042104 Polyketide synthase, dehydratase domain superfamily CL55_RS03845 IPR020807 Polyketide synthase, dehydratase domain CL55_RS03845 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CL55_RS03845 IPR032821 Ketoacyl-synthetase, C-terminal extension CL55_RS03845 IPR036291 NAD(P)-binding domain superfamily CL55_RS03845 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CL55_RS03845 IPR014030 Beta-ketoacyl synthase, N-terminal CL55_RS03845 IPR014043 Acyl transferase CL55_RS03845 IPR016039 Thiolase-like CL55_RS03850 IPR035990 Triosephosphate isomerase superfamily CL55_RS03850 IPR013785 Aldolase-type TIM barrel CL55_RS03850 IPR000652 Triosephosphate isomerase CL55_RS03850 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic CL55_RS03850 IPR020861 Triosephosphate isomerase, active site CL55_RS03855 IPR004692 Preprotein translocase SecG subunit CL55_RS03865 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid CL55_RS03865 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily CL55_RS03865 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 CL55_RS03870 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit CL55_RS03870 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit CL55_RS03875 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit CL55_RS03875 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site CL55_RS03875 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily CL55_RS03875 IPR010218 NADH dehydrogenase, subunit C CL55_RS03880 IPR001135 NADH-quinone oxidoreductase, subunit D CL55_RS03880 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site CL55_RS03880 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H CL55_RS03880 IPR029014 [NiFe]-hydrogenase, large subunit CL55_RS03880 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily CL55_RS03885 IPR002023 NADH-quinone oxidoreductase subunit E-like CL55_RS03885 IPR042128 NuoE domain CL55_RS03885 IPR036249 Thioredoxin-like superfamily CL55_RS03885 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal CL55_RS03890 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CL55_RS03890 IPR019554 Soluble ligand binding domain CL55_RS03890 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CL55_RS03890 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site CL55_RS03890 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily CL55_RS03890 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain CL55_RS03890 IPR011537 NADH ubiquinone oxidoreductase, F subunit CL55_RS03895 IPR010228 NADH:ubiquinone oxidoreductase, subunit G CL55_RS03895 IPR006656 Molybdopterin oxidoreductase CL55_RS03895 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS03895 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding CL55_RS03895 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal CL55_RS03895 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CL55_RS03895 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS03895 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site CL55_RS03900 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H CL55_RS03900 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site CL55_RS03905 IPR010226 NADH-quinone oxidoreductase, chain I CL55_RS03905 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS03905 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS03910 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ CL55_RS03910 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 CL55_RS03915 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K CL55_RS03915 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CL55_RS03920 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 CL55_RS03920 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal CL55_RS03920 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup CL55_RS03920 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CL55_RS03925 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CL55_RS03925 IPR010227 NADH-quinone oxidoreductase, chain M/4 CL55_RS03925 IPR003918 NADH:ubiquinone oxidoreductase CL55_RS03925 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal CL55_RS03930 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CL55_RS03930 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 CL55_RS03935 IPR020084 NUDIX hydrolase, conserved site CL55_RS03935 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS03935 IPR020476 NUDIX hydrolase CL55_RS03935 IPR000086 NUDIX hydrolase domain CL55_RS03945 IPR010061 Methylmalonate-semialdehyde dehydrogenase CL55_RS03945 IPR015590 Aldehyde dehydrogenase domain CL55_RS03945 IPR016162 Aldehyde dehydrogenase, N-terminal CL55_RS03945 IPR016160 Aldehyde dehydrogenase, cysteine active site CL55_RS03945 IPR016163 Aldehyde dehydrogenase, C-terminal CL55_RS03945 IPR016161 Aldehyde/histidinol dehydrogenase CL55_RS03950 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CL55_RS03950 IPR023663 NADPH dehydrogenase CL55_RS03950 IPR013785 Aldolase-type TIM barrel CL55_RS03965 IPR036397 Ribonuclease H superfamily CL55_RS03965 IPR012337 Ribonuclease H-like superfamily CL55_RS03965 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CL55_RS03965 IPR006309 DNA polymerase 3, epsilon subunit CL55_RS03965 IPR013520 Exonuclease, RNase T/DNA polymerase III CL55_RS03970 IPR001036 Acriflavin resistance protein CL55_RS03970 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CL55_RS03970 IPR022831 Multidrug resistance protein MdtB CL55_RS03975 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CL55_RS03975 IPR022824 Multidrug resistance protein MdtA CL55_RS03975 IPR006143 RND efflux pump, membrane fusion protein CL55_RS03980 IPR012337 Ribonuclease H-like superfamily CL55_RS03980 IPR002156 Ribonuclease H domain CL55_RS03980 IPR022892 Ribonuclease HI CL55_RS03980 IPR036397 Ribonuclease H superfamily CL55_RS03985 IPR026669 Arsenite methyltransferase-like CL55_RS03985 IPR025714 Methyltransferase domain CL55_RS03985 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS03990 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS03990 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain CL55_RS03990 IPR017782 Hydroxyacylglutathione hydrolase CL55_RS03990 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain CL55_RS03990 IPR001279 Metallo-beta-lactamase CL55_RS03995 IPR008258 Transglycosylase SLT domain 1 CL55_RS03995 IPR036779 LysM domain superfamily CL55_RS03995 IPR018392 LysM domain CL55_RS03995 IPR000189 Prokaryotic transglycosylase, active site CL55_RS03995 IPR023346 Lysozyme-like domain superfamily CL55_RS04000 IPR012694 Propionate--CoA ligase CL55_RS04000 IPR042099 AMP-dependent synthetase-like superfamily CL55_RS04000 IPR000873 AMP-dependent synthetase/ligase CL55_RS04000 IPR020845 AMP-binding, conserved site CL55_RS04000 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS04000 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain CL55_RS04005 IPR017926 Glutamine amidotransferase CL55_RS04005 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily CL55_RS04005 IPR029062 Class I glutamine amidotransferase-like CL55_RS04005 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain CL55_RS04005 IPR006274 Carbamoyl-phosphate synthase, small subunit CL55_RS04005 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain CL55_RS04010 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CL55_RS04010 IPR006275 Carbamoyl-phosphate synthase, large subunit CL55_RS04010 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily CL55_RS04010 IPR016185 Pre-ATP-grasp domain superfamily CL55_RS04010 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain CL55_RS04010 IPR011607 Methylglyoxal synthase-like domain CL55_RS04010 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain CL55_RS04010 IPR036914 Methylglyoxal synthase-like domain superfamily CL55_RS04010 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CL55_RS04010 IPR011761 ATP-grasp fold CL55_RS04015 IPR023459 Transcription elongation factor GreA/GreB family CL55_RS04015 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CL55_RS04015 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily CL55_RS04015 IPR028624 Transcription elongation factor GreA/GreB CL55_RS04015 IPR006359 Transcription elongation factor GreA CL55_RS04015 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CL55_RS04015 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily CL55_RS04015 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CL55_RS04030 IPR015507 Ribosomal RNA large subunit methyltransferase E CL55_RS04030 IPR002877 Ribosomal RNA methyltransferase FtsJ domain CL55_RS04030 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS04035 IPR041569 AAA ATPase, AAA+ lid domain CL55_RS04035 IPR003593 AAA+ ATPase domain CL55_RS04035 IPR037219 Peptidase M41-like CL55_RS04035 IPR000642 Peptidase M41 CL55_RS04035 IPR005936 Peptidase, FtsH CL55_RS04035 IPR011546 Peptidase M41, FtsH extracellular CL55_RS04035 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04035 IPR003960 ATPase, AAA-type, conserved site CL55_RS04035 IPR003959 ATPase, AAA-type, core CL55_RS04040 IPR006390 Dihydropteroate synthase CL55_RS04040 IPR011005 Dihydropteroate synthase-like CL55_RS04040 IPR000489 Pterin-binding domain CL55_RS04045 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CL55_RS04045 IPR005843 Alpha-D-phosphohexomutase, C-terminal CL55_RS04045 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CL55_RS04045 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CL55_RS04045 IPR016066 Alpha-D-phosphohexomutase, conserved site CL55_RS04045 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CL55_RS04045 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CL55_RS04045 IPR006352 Phosphoglucosamine mutase, bacterial type CL55_RS04045 IPR005841 Alpha-D-phosphohexomutase superfamily CL55_RS04050 IPR024370 PBP domain CL55_RS04050 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS CL55_RS04055 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS04055 IPR035906 MetI-like superfamily CL55_RS04055 IPR011864 Phosphate ABC transporter, permease protein PstC CL55_RS04060 IPR035906 MetI-like superfamily CL55_RS04060 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS04060 IPR005672 Phosphate transport system permease protein PstA CL55_RS04065 IPR005670 Phosphate transport system permease protein 1 CL55_RS04065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04065 IPR015850 ABC transporter, phosphate import, PstB CL55_RS04065 IPR003439 ABC transporter-like CL55_RS04065 IPR003593 AAA+ ATPase domain CL55_RS04065 IPR017871 ABC transporter, conserved site CL55_RS04070 IPR028366 Phosphate transport system protein PhoU CL55_RS04070 IPR038078 PhoU-like domain superfamily CL55_RS04070 IPR026022 PhoU domain CL55_RS04075 IPR001789 Signal transduction response regulator, receiver domain CL55_RS04075 IPR011006 CheY-like superfamily CL55_RS04075 IPR001867 OmpR/PhoB-type DNA-binding domain CL55_RS04075 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB CL55_RS04075 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS04075 IPR039420 Transcriptional regulatory protein WalR-like CL55_RS04080 IPR005467 Histidine kinase domain CL55_RS04080 IPR021766 Phosphate regulon sensor protein PhoR CL55_RS04080 IPR013767 PAS fold CL55_RS04080 IPR035965 PAS domain superfamily CL55_RS04080 IPR000014 PAS domain CL55_RS04080 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS04080 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR CL55_RS04080 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS04080 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS04080 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS04080 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS04090 IPR023714 Zinc transport protein ZntB CL55_RS04090 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB CL55_RS04110 IPR017850 Alkaline-phosphatase-like, core domain superfamily CL55_RS04110 IPR018299 Alkaline phosphatase, active site CL55_RS04110 IPR001952 Alkaline phosphatase CL55_RS04130 IPR030673 Pyrophosphatase, GppA/Ppx-type CL55_RS04130 IPR022371 Exopolyphosphatase CL55_RS04130 IPR003695 Ppx/GppA phosphatase CL55_RS04140 IPR000829 DAGK family CL55_RS04140 IPR033718 Diacylglycerol kinase, prokaryotic CL55_RS04140 IPR036945 Diacylglycerol kinase (DAGK) superfamily CL55_RS04145 IPR017814 Mycothiol biosynthesis protein, MshA CL55_RS04145 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CL55_RS04145 IPR001296 Glycosyl transferase, family 1 CL55_RS04155 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase CL55_RS04155 IPR002123 Phospholipid/glycerol acyltransferase CL55_RS04160 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04160 IPR016898 Polyphosphate kinase 2 CL55_RS04160 IPR022488 Polyphosphate kinase-2-related CL55_RS04160 IPR022486 Polyphosphate kinase 2, PA0141 CL55_RS04180 IPR000531 TonB-dependent receptor-like, beta-barrel CL55_RS04180 IPR039426 Vitamin B12 transporter BtuB-like CL55_RS04180 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CL55_RS04180 IPR037066 TonB-dependent receptor, plug domain superfamily CL55_RS04180 IPR011276 TonB-dependent haem/haemoglobin receptor CL55_RS04180 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor CL55_RS04180 IPR012910 TonB-dependent receptor, plug domain CL55_RS04180 IPR010916 TonB box, conserved site CL55_RS04220 IPR003615 HNH nuclease CL55_RS04260 IPR010998 Integrase/recombinase, N-terminal CL55_RS04260 IPR011010 DNA breaking-rejoining enzyme, catalytic core CL55_RS04260 IPR035069 TTHA1013/TTHA0281-like CL55_RS04260 IPR013762 Integrase-like, catalytic domain superfamily CL55_RS04260 IPR002104 Integrase, catalytic domain CL55_RS04300 IPR036378 FAS1 domain superfamily CL55_RS04300 IPR000782 FAS1 domain CL55_RS04330 IPR001279 Metallo-beta-lactamase CL55_RS04330 IPR022712 Beta-Casp domain CL55_RS04330 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS04330 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CL55_RS04335 IPR029069 HotDog domain superfamily CL55_RS04335 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CL55_RS04335 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CL55_RS04340 IPR018062 HTH domain AraC-type, conserved site CL55_RS04340 IPR018060 DNA binding HTH domain, AraC-type CL55_RS04340 IPR037923 Transcription regulator HTH-like CL55_RS04340 IPR009057 Homeobox-like domain superfamily CL55_RS04340 IPR003313 AraC-type arabinose-binding/dimerisation domain CL55_RS04345 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CL55_RS04345 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CL55_RS04345 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CL55_RS04345 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CL55_RS04350 IPR002346 Molybdopterin dehydrogenase, FAD-binding CL55_RS04350 IPR016169 FAD-binding, type PCMH, subdomain 2 CL55_RS04350 IPR005107 CO dehydrogenase flavoprotein, C-terminal CL55_RS04350 IPR016167 FAD-binding, type PCMH, subdomain 1 CL55_RS04350 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily CL55_RS04350 IPR016166 FAD-binding domain, PCMH-type CL55_RS04350 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS04355 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS04355 IPR036884 [2Fe-2S]-binding domain superfamily CL55_RS04355 IPR002888 [2Fe-2S]-binding CL55_RS04355 IPR012675 Beta-grasp domain superfamily CL55_RS04355 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CL55_RS04355 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS04360 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS04360 IPR020845 AMP-binding, conserved site CL55_RS04360 IPR000873 AMP-dependent synthetase/ligase CL55_RS04365 IPR036291 NAD(P)-binding domain superfamily CL55_RS04365 IPR012802 Fatty oxidation complex, alpha subunit FadJ CL55_RS04365 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CL55_RS04365 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CL55_RS04365 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS04365 IPR001753 Enoyl-CoA hydratase/isomerase CL55_RS04365 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CL55_RS04365 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS04365 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site CL55_RS04375 IPR001851 ABC transporter, permease CL55_RS04385 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CL55_RS04385 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04385 IPR017871 ABC transporter, conserved site CL55_RS04385 IPR003439 ABC transporter-like CL55_RS04385 IPR003593 AAA+ ATPase domain CL55_RS04390 IPR017871 ABC transporter, conserved site CL55_RS04390 IPR003439 ABC transporter-like CL55_RS04390 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein CL55_RS04390 IPR003593 AAA+ ATPase domain CL55_RS04390 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04395 IPR004498 Ribosomal protein L11 methyltransferase CL55_RS04395 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS04420 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS04420 IPR025714 Methyltransferase domain CL55_RS04420 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC CL55_RS04425 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain CL55_RS04425 IPR036291 NAD(P)-binding domain superfamily CL55_RS04425 IPR011548 3-hydroxyisobutyrate dehydrogenase CL55_RS04425 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site CL55_RS04425 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS04425 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS04425 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CL55_RS04425 IPR015815 3-hydroxyisobutyrate dehydrogenase-related CL55_RS04430 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS04430 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS04430 IPR005814 Aminotransferase class-III CL55_RS04430 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CL55_RS04430 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS04435 IPR029058 Alpha/Beta hydrolase fold CL55_RS04435 IPR013094 Alpha/beta hydrolase fold-3 CL55_RS04450 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS04450 IPR000700 PAS-associated, C-terminal CL55_RS04450 IPR005467 Histidine kinase domain CL55_RS04450 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS04450 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS04450 IPR035965 PAS domain superfamily CL55_RS04450 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS04450 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS04450 IPR011006 CheY-like superfamily CL55_RS04450 IPR001610 PAC motif CL55_RS04450 IPR001789 Signal transduction response regulator, receiver domain CL55_RS04450 IPR000014 PAS domain CL55_RS04470 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 CL55_RS04470 IPR003817 Phosphatidylserine decarboxylase-related CL55_RS04470 IPR033177 Phosphatidylserine decarboxylase CL55_RS04475 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS04475 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS04475 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS04475 IPR016039 Thiolase-like CL55_RS04475 IPR001242 Condensation domain CL55_RS04475 IPR000873 AMP-dependent synthetase/ligase CL55_RS04475 IPR014030 Beta-ketoacyl synthase, N-terminal CL55_RS04475 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CL55_RS04475 IPR042099 AMP-dependent synthetase-like superfamily CL55_RS04475 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CL55_RS04475 IPR020845 AMP-binding, conserved site CL55_RS04475 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS04475 IPR005814 Aminotransferase class-III CL55_RS04475 IPR036736 ACP-like superfamily CL55_RS04475 IPR010071 Amino acid adenylation domain CL55_RS04475 IPR006162 Phosphopantetheine attachment site CL55_RS04475 IPR009081 Phosphopantetheine binding ACP domain CL55_RS04475 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CL55_RS04475 IPR032821 Ketoacyl-synthetase, C-terminal extension CL55_RS04475 IPR018201 Beta-ketoacyl synthase, active site CL55_RS04475 IPR014031 Beta-ketoacyl synthase, C-terminal CL55_RS04485 IPR001296 Glycosyl transferase, family 1 CL55_RS04485 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CL55_RS04500 IPR029033 Histidine phosphatase superfamily CL55_RS04500 IPR004449 Phosphohistidine phosphatase SixA CL55_RS04500 IPR013078 Histidine phosphatase superfamily, clade-1 CL55_RS04520 IPR005684 Integration host factor, alpha subunit CL55_RS04520 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CL55_RS04520 IPR020816 Histone-like DNA-binding protein, conserved site CL55_RS04520 IPR000119 Histone-like DNA-binding protein CL55_RS04545 IPR013446 Glucose-1-phosphate cytidylyltransferase CL55_RS04545 IPR005835 Nucleotidyl transferase domain CL55_RS04545 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS04550 IPR036291 NAD(P)-binding domain superfamily CL55_RS04550 IPR016040 NAD(P)-binding domain CL55_RS04550 IPR013445 CDP-glucose 4,6-dehydratase CL55_RS04555 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CL55_RS04555 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS04555 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS04555 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS04565 IPR012846 Acetolactate synthase, large subunit, biosynthetic CL55_RS04565 IPR039368 Acetolactate synthase large subunit, TPP binding domain CL55_RS04565 IPR029035 DHS-like NAD/FAD-binding domain superfamily CL55_RS04565 IPR012000 Thiamine pyrophosphate enzyme, central domain CL55_RS04565 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CL55_RS04565 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CL55_RS04565 IPR029061 Thiamin diphosphate-binding fold CL55_RS04570 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS04570 IPR010233 Ubiquinone biosynthesis O-methyltransferase CL55_RS04575 IPR033715 GDP-mannose mannosyl hydrolase CL55_RS04575 IPR028613 GDP-mannose mannosyl hydrolase, Enterobacteria CL55_RS04575 IPR020084 NUDIX hydrolase, conserved site CL55_RS04575 IPR000086 NUDIX hydrolase domain CL55_RS04575 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS04590 IPR036291 NAD(P)-binding domain superfamily CL55_RS04590 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CL55_RS04590 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) CL55_RS04595 IPR007197 Radical SAM CL55_RS04595 IPR010505 Molybdenum cofactor synthesis C-terminal CL55_RS04595 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site CL55_RS04595 IPR013483 Molybdenum cofactor biosynthesis protein A CL55_RS04595 IPR006638 Elp3/MiaB/NifB CL55_RS04595 IPR013785 Aldolase-type TIM barrel CL55_RS04610 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily CL55_RS04610 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily CL55_RS04610 IPR002081 Cryptochrome/DNA photolyase class 1 CL55_RS04610 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain CL55_RS04610 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS04610 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal CL55_RS04610 IPR006050 DNA photolyase, N-terminal CL55_RS04630 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CL55_RS04635 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ CL55_RS04635 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CL55_RS04635 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS04635 IPR035906 MetI-like superfamily CL55_RS04640 IPR035906 MetI-like superfamily CL55_RS04640 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS04640 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM CL55_RS04640 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CL55_RS04645 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CL55_RS04645 IPR017871 ABC transporter, conserved site CL55_RS04645 IPR003439 ABC transporter-like CL55_RS04645 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04645 IPR003593 AAA+ ATPase domain CL55_RS04660 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04660 IPR022486 Polyphosphate kinase 2, PA0141 CL55_RS04660 IPR022488 Polyphosphate kinase-2-related CL55_RS04680 IPR008254 Flavodoxin/nitric oxide synthase CL55_RS04680 IPR001226 Flavodoxin, conserved site CL55_RS04680 IPR029039 Flavoprotein-like superfamily CL55_RS04680 IPR010089 Flavoprotein WrbA-like CL55_RS04680 IPR005025 NADPH-dependent FMN reductase-like CL55_RS04685 IPR023679 Uncharacterised protein family UPF0761, bacterial CL55_RS04685 IPR017039 Virulence factor BrkB CL55_RS04695 IPR000453 Chorismate synthase CL55_RS04695 IPR035904 Chorismate synthase AroC superfamily CL55_RS04695 IPR020541 Chorismate synthase, conserved site CL55_RS04705 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS04705 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS04705 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase CL55_RS04710 IPR004163 Coenzyme A transferase binding site CL55_RS04710 IPR037171 NagB/RpiA transferase-like CL55_RS04710 IPR012792 3-oxoacid CoA-transferase, subunit A CL55_RS04710 IPR004165 Coenzyme A transferase family I CL55_RS04715 IPR037171 NagB/RpiA transferase-like CL55_RS04715 IPR012791 3-oxoacid CoA-transferase, subunit B CL55_RS04715 IPR004165 Coenzyme A transferase family I CL55_RS04715 IPR004164 Coenzyme A transferase active site CL55_RS04740 IPR036621 Anticodon-binding domain superfamily CL55_RS04740 IPR002320 Threonine-tRNA ligase, class IIa CL55_RS04740 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CL55_RS04740 IPR012676 TGS-like CL55_RS04740 IPR004095 TGS CL55_RS04740 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CL55_RS04740 IPR033728 Threonine-tRNA ligase catalytic core domain CL55_RS04740 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CL55_RS04740 IPR006195 Aminoacyl-tRNA synthetase, class II CL55_RS04740 IPR004154 Anticodon-binding CL55_RS04740 IPR012675 Beta-grasp domain superfamily CL55_RS04745 IPR019814 Translation initiation factor 3, N-terminal CL55_RS04745 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily CL55_RS04745 IPR019815 Translation initiation factor 3, C-terminal CL55_RS04745 IPR001288 Translation initiation factor 3 CL55_RS04745 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily CL55_RS04745 IPR019813 Translation initiation factor 3, conserved site CL55_RS04750 IPR037229 Ribosomal protein L35 superfamily CL55_RS04750 IPR018265 Ribosomal protein L35, conserved site CL55_RS04750 IPR021137 Ribosomal protein L35 CL55_RS04750 IPR001706 Ribosomal protein L35, non-mitochondrial CL55_RS04755 IPR005813 Ribosomal protein L20 CL55_RS04755 IPR035566 Ribosomal protein L20, C-terminal CL55_RS04760 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CL55_RS04760 IPR002319 Phenylalanyl-tRNA synthetase CL55_RS04760 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial CL55_RS04760 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal CL55_RS04760 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit CL55_RS04760 IPR006195 Aminoacyl-tRNA synthetase, class II CL55_RS04765 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CL55_RS04765 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CL55_RS04765 IPR005121 Ferrodoxin-fold anticodon-binding domain CL55_RS04765 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CL55_RS04765 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CL55_RS04765 IPR009061 Putative DNA-binding domain superfamily CL55_RS04765 IPR012340 Nucleic acid-binding, OB-fold CL55_RS04765 IPR005146 B3/B4 tRNA-binding domain CL55_RS04765 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CL55_RS04765 IPR005147 tRNA synthetase, B5-domain CL55_RS04765 IPR002547 tRNA-binding domain CL55_RS04770 IPR020816 Histone-like DNA-binding protein, conserved site CL55_RS04770 IPR000119 Histone-like DNA-binding protein CL55_RS04770 IPR005684 Integration host factor, alpha subunit CL55_RS04770 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CL55_RS04790 IPR003844 Uncharacterised protein family UPF0060 CL55_RS04810 IPR006143 RND efflux pump, membrane fusion protein CL55_RS04810 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CL55_RS04815 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA CL55_RS04815 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CL55_RS04815 IPR001036 Acriflavin resistance protein CL55_RS04835 IPR009057 Homeobox-like domain superfamily CL55_RS04835 IPR006118 Recombinase, conserved site CL55_RS04835 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily CL55_RS04835 IPR006119 Resolvase, N-terminal catalytic domain CL55_RS04835 IPR006120 Resolvase, HTH domain CL55_RS04860 IPR001801 Histone-like protein H-NS CL55_RS04860 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily CL55_RS04860 IPR027444 Histone-like protein H-NS, C-terminal domain CL55_RS04870 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain CL55_RS04870 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal CL55_RS04870 IPR001017 Dehydrogenase, E1 component CL55_RS04870 IPR029061 Thiamin diphosphate-binding fold CL55_RS04870 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily CL55_RS04870 IPR005475 Transketolase-like, pyrimidine-binding domain CL55_RS04870 IPR011603 2-oxoglutarate dehydrogenase E1 component CL55_RS04875 IPR011053 Single hybrid motif CL55_RS04875 IPR000089 Biotin/lipoyl attachment CL55_RS04875 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CL55_RS04875 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CL55_RS04875 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CL55_RS04875 IPR036625 E3-binding domain superfamily CL55_RS04875 IPR004167 Peripheral subunit-binding domain CL55_RS04875 IPR006255 Dihydrolipoamide succinyltransferase CL55_RS04880 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CL55_RS04880 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL55_RS04880 IPR023753 FAD/NAD(P)-binding domain CL55_RS04880 IPR006258 Dihydrolipoamide dehydrogenase CL55_RS04880 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CL55_RS04880 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CL55_RS04880 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS04885 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS04885 IPR030870 Cell division protein ZapE CL55_RS04885 IPR005654 ATPase, AFG1-like CL55_RS04890 IPR003141 Polymerase/histidinol phosphatase, N-terminal CL55_RS04890 IPR004013 PHP domain CL55_RS04890 IPR016195 Polymerase/histidinol phosphatase-like CL55_RS04895 IPR002306 Tryptophan-tRNA ligase CL55_RS04895 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS04895 IPR002305 Aminoacyl-tRNA synthetase, class Ic CL55_RS04895 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS04905 IPR013785 Aldolase-type TIM barrel CL55_RS04905 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA CL55_RS04905 IPR002220 DapA-like CL55_RS04905 IPR020625 Schiff base-forming aldolase, active site CL55_RS04910 IPR010653 NlpB/DapX lipoprotein CL55_RS04910 IPR042268 Outer membrane protein assembly factor BamC, C-terminal CL55_RS04910 IPR014524 Outer membrane protein assembly factor BamC CL55_RS04920 IPR039994 JmjC domain-containing CL55_RS04920 IPR003347 JmjC domain CL55_RS04925 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CL55_RS04930 IPR018357 Hexapeptide transferase, conserved site CL55_RS04930 IPR001451 Hexapeptide repeat CL55_RS04930 IPR042122 Serine acetyltransferase, N-terminal domain superfamily CL55_RS04930 IPR005881 Serine O-acetyltransferase CL55_RS04930 IPR011004 Trimeric LpxA-like superfamily CL55_RS04935 IPR029028 Alpha/beta knot methyltransferases CL55_RS04935 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CL55_RS04935 IPR004384 RNA methyltransferase TrmJ/LasT CL55_RS04935 IPR001537 tRNA/rRNA methyltransferase, SpoU type CL55_RS04940 IPR000760 Inositol monophosphatase-like CL55_RS04940 IPR022337 Inositol monophosphatase, SuhB CL55_RS04940 IPR033942 Inositol monophosphatase CL55_RS04940 IPR020583 Inositol monophosphatase, metal-binding site CL55_RS04940 IPR020550 Inositol monophosphatase, conserved site CL55_RS04945 IPR010138 UDP-2,3-diacylglucosamine hydrolase CL55_RS04945 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CL55_RS04945 IPR029052 Metallo-dependent phosphatase-like CL55_RS04950 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase CL55_RS04950 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain CL55_RS04950 IPR029000 Cyclophilin-like domain superfamily CL55_RS04950 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site CL55_RS04960 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS04960 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CL55_RS04960 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase CL55_RS04960 IPR015803 Cysteine-tRNA ligase CL55_RS04960 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR CL55_RS04960 IPR032678 tRNA synthetases class I, catalytic domain CL55_RS04970 IPR001095 Acetyl-CoA carboxylase, alpha subunit CL55_RS04970 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS04970 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CL55_RS04975 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal CL55_RS04975 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS04975 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CL55_RS04975 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal CL55_RS04975 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain CL55_RS04975 IPR012094 tRNA(Ile)-lysidine synthase CL55_RS04980 IPR018042 Aspartate kinase, conserved site CL55_RS04980 IPR001341 Aspartate kinase CL55_RS04980 IPR005260 Aspartate kinase, monofunctional class CL55_RS04980 IPR001048 Aspartate/glutamate/uridylate kinase CL55_RS04980 IPR036393 Acetylglutamate kinase-like superfamily CL55_RS04980 IPR002912 ACT domain CL55_RS04980 IPR027795 CASTOR, ACT domain CL55_RS04980 IPR041740 Aspartokinase catalytic domain CL55_RS04990 IPR000120 Amidase CL55_RS04990 IPR020556 Amidase, conserved site CL55_RS04990 IPR023631 Amidase signature domain CL55_RS04990 IPR036928 Amidase signature (AS) superfamily CL55_RS04990 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit CL55_RS05025 IPR000836 Phosphoribosyltransferase domain CL55_RS05025 IPR005764 Adenine phosphoribosyl transferase CL55_RS05025 IPR029057 Phosphoribosyltransferase-like CL55_RS05030 IPR035994 Nucleoside phosphorylase superfamily CL55_RS05030 IPR000845 Nucleoside phosphorylase domain CL55_RS05030 IPR010049 MTA/SAH nucleosidase CL55_RS05050 IPR001539 Peptidase U32 CL55_RS05050 IPR032525 Peptidase family U32, C-terminal CL55_RS05070 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CL55_RS05070 IPR029056 Ribokinase-like CL55_RS05070 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CL55_RS05075 IPR013785 Aldolase-type TIM barrel CL55_RS05075 IPR022998 Thiamine phosphate synthase/TenI CL55_RS05075 IPR034291 Thiamine phosphate synthase CL55_RS05075 IPR036206 Thiamin phosphate synthase superfamily CL55_RS05080 IPR013785 Aldolase-type TIM barrel CL55_RS05080 IPR008867 Thiazole synthase CL55_RS05080 IPR033983 Thiazole synthase ThiG CL55_RS05090 IPR012727 Glycine oxidase ThiO CL55_RS05090 IPR023209 D-amino-acid oxidase CL55_RS05090 IPR006076 FAD dependent oxidoreductase CL55_RS05090 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS05095 IPR025747 ThiC-associated domain CL55_RS05095 IPR037509 Phosphomethylpyrimidine synthase CL55_RS05095 IPR038521 ThiC/Bza superfamily CL55_RS05095 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B CL55_RS05115 IPR023606 CoA-transferase family III domain superfamily CL55_RS05115 IPR003673 CoA-transferase family III CL55_RS05115 IPR017659 Formyl-CoA:oxalate CoA-transferase CL55_RS05120 IPR018522 DNA topoisomerase, type IIA, conserved site CL55_RS05120 IPR006171 TOPRIM domain CL55_RS05120 IPR002288 DNA gyrase B subunit, C-terminal CL55_RS05120 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS05120 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CL55_RS05120 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS05120 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS05120 IPR001241 DNA topoisomerase, type IIA CL55_RS05120 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CL55_RS05120 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CL55_RS05120 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS05120 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative CL55_RS05125 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CL55_RS05125 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative CL55_RS05125 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CL55_RS05125 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CL55_RS05125 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CL55_RS05125 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CL55_RS05130 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family CL55_RS05130 IPR003777 XdhC- CoxI CL55_RS05130 IPR027051 XdhC Rossmann domain CL55_RS05135 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS05135 IPR011004 Trimeric LpxA-like superfamily CL55_RS05135 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CL55_RS05135 IPR025877 MobA-like NTP transferase CL55_RS05135 IPR001451 Hexapeptide repeat CL55_RS05150 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05150 IPR000642 Peptidase M41 CL55_RS05150 IPR037219 Peptidase M41-like CL55_RS05150 IPR041569 AAA ATPase, AAA+ lid domain CL55_RS05150 IPR003593 AAA+ ATPase domain CL55_RS05150 IPR003959 ATPase, AAA-type, core CL55_RS05150 IPR005936 Peptidase, FtsH CL55_RS05150 IPR003960 ATPase, AAA-type, conserved site CL55_RS05160 IPR008168 Cytochrome c, class IC CL55_RS05160 IPR024167 Cytochrome c4-like CL55_RS05160 IPR009056 Cytochrome c-like domain CL55_RS05160 IPR036909 Cytochrome c-like domain superfamily CL55_RS05165 IPR000485 AsnC-type HTH domain CL55_RS05165 IPR011711 GntR, C-terminal CL55_RS05165 IPR008920 Transcription regulator FadR/GntR, C-terminal CL55_RS05165 IPR000524 Transcription regulator HTH, GntR CL55_RS05165 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS05165 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS05170 IPR006159 Methylmalonyl-CoA mutase, C-terminal CL55_RS05170 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic CL55_RS05170 IPR006158 Cobalamin (vitamin B12)-binding domain CL55_RS05170 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic CL55_RS05170 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic CL55_RS05170 IPR036724 Cobalamin-binding domain superfamily CL55_RS05175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05175 IPR003593 AAA+ ATPase domain CL55_RS05175 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB CL55_RS05180 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CL55_RS05180 IPR034733 Acetyl-CoA carboxylase CL55_RS05180 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS05180 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CL55_RS05185 IPR041265 Propionyl-coenzyme A carboxylase, BT domain CL55_RS05185 IPR016185 Pre-ATP-grasp domain superfamily CL55_RS05185 IPR001882 Biotin-binding site CL55_RS05185 IPR005481 Biotin carboxylase-like, N-terminal domain CL55_RS05185 IPR011761 ATP-grasp fold CL55_RS05185 IPR011764 Biotin carboxylation domain CL55_RS05185 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS05185 IPR000089 Biotin/lipoyl attachment CL55_RS05185 IPR005482 Biotin carboxylase, C-terminal CL55_RS05185 IPR011053 Single hybrid motif CL55_RS05185 IPR011054 Rudiment single hybrid motif CL55_RS05185 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CL55_RS05200 IPR000182 GNAT domain CL55_RS05200 IPR016181 Acyl-CoA N-acyltransferase CL55_RS05200 IPR006464 N-acetyltransferase RimI/Ard1 CL55_RS05210 IPR036259 MFS transporter superfamily CL55_RS05210 IPR023727 Lysophospholipid transporter LplT CL55_RS05210 IPR011701 Major facilitator superfamily CL55_RS05215 IPR029066 PLP-binding barrel CL55_RS05215 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site CL55_RS05215 IPR001608 Alanine racemase, N-terminal CL55_RS05215 IPR000821 Alanine racemase CL55_RS05215 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CL55_RS05215 IPR011079 Alanine racemase, C-terminal CL55_RS05220 IPR039565 Outer membrane lipoprotein BamD-like CL55_RS05220 IPR011990 Tetratricopeptide-like helical domain superfamily CL55_RS05220 IPR017689 Outer membrane protein assembly factor BamD CL55_RS05225 IPR006145 Pseudouridine synthase, RsuA/RluA CL55_RS05225 IPR002942 RNA-binding S4 domain CL55_RS05225 IPR020103 Pseudouridine synthase, catalytic domain superfamily CL55_RS05225 IPR036986 RNA-binding S4 domain superfamily CL55_RS05225 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CL55_RS05225 IPR006225 Pseudouridine synthase, RluC/RluD CL55_RS05230 IPR011324 Cytotoxic necrotizing factor-like, catalytic CL55_RS05230 IPR038371 Multi-copper polyphenol oxidoreductase superfamily CL55_RS05230 IPR003730 Multi-copper polyphenol oxidoreductase CL55_RS05235 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain CL55_RS05235 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I CL55_RS05235 IPR029058 Alpha/Beta hydrolase fold CL55_RS05240 IPR011283 Acetoacetyl-CoA reductase CL55_RS05240 IPR036291 NAD(P)-binding domain superfamily CL55_RS05240 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS05240 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS05245 IPR012909 PHA accumulation regulator DNA-binding, N-terminal CL55_RS05245 IPR007897 PHB accumulation regulatory CL55_RS05245 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR CL55_RS05250 IPR002792 TRAM domain CL55_RS05250 IPR023404 Radical SAM, alpha/beta horseshoe CL55_RS05250 IPR007197 Radical SAM CL55_RS05250 IPR006638 Elp3/MiaB/NifB CL55_RS05250 IPR005840 Ribosomal protein S12 methylthiotransferase RimO CL55_RS05250 IPR013848 Methylthiotransferase, N-terminal CL55_RS05250 IPR020612 Methylthiotransferase, conserved site CL55_RS05250 IPR005839 Methylthiotransferase CL55_RS05250 IPR041582 RimO, TRAM domain CL55_RS05250 IPR038135 Methylthiotransferase, N-terminal domain superfamily CL55_RS05255 IPR002155 Thiolase CL55_RS05255 IPR016039 Thiolase-like CL55_RS05255 IPR020615 Thiolase, acyl-enzyme intermediate active site CL55_RS05255 IPR020616 Thiolase, N-terminal CL55_RS05255 IPR020610 Thiolase, active site CL55_RS05255 IPR020617 Thiolase, C-terminal CL55_RS05260 IPR023214 HAD superfamily CL55_RS05260 IPR036412 HAD-like superfamily CL55_RS05265 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05265 IPR003711 CarD-like/TRCF domain CL55_RS05265 IPR001650 Helicase, C-terminal CL55_RS05265 IPR036101 CarD-like/TRCF domain superfamily CL55_RS05265 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS05265 IPR041471 UvrB, interaction domain CL55_RS05265 IPR005118 Transcription-repair-coupling factor, C-terminal domain CL55_RS05265 IPR037235 TRCF-like, C-terminal domain CL55_RS05265 IPR004576 Transcription-repair coupling factor CL55_RS05265 IPR011545 DEAD/DEAH box helicase domain CL55_RS05270 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CL55_RS05270 IPR034683 Cytidylyltransferase IspD/TarI CL55_RS05270 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site CL55_RS05270 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS05275 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CL55_RS05275 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily CL55_RS05275 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site CL55_RS05285 IPR036611 Trigger factor ribosome-binding domain superfamily CL55_RS05285 IPR027304 Trigger factor/SurA domain superfamily CL55_RS05285 IPR008880 Trigger factor, C-terminal CL55_RS05285 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CL55_RS05285 IPR037041 Trigger factor, C-terminal domain superfamily CL55_RS05285 IPR008881 Trigger factor, ribosome-binding, bacterial CL55_RS05285 IPR005215 Trigger factor CL55_RS05290 IPR018215 ClpP, Ser active site CL55_RS05290 IPR033135 ClpP, histidine active site CL55_RS05290 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CL55_RS05290 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS05290 IPR001907 ATP-dependent Clp protease proteolytic subunit CL55_RS05295 IPR038366 Zinc finger, ClpX C4-type superfamily CL55_RS05295 IPR010603 Zinc finger, ClpX C4-type CL55_RS05295 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05295 IPR004487 Clp protease, ATP-binding subunit ClpX CL55_RS05295 IPR003593 AAA+ ATPase domain CL55_RS05295 IPR003959 ATPase, AAA-type, core CL55_RS05295 IPR019489 Clp ATPase, C-terminal CL55_RS05300 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS05300 IPR015947 PUA-like superfamily CL55_RS05300 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05300 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS05300 IPR003111 Lon, substrate-binding domain CL55_RS05300 IPR003593 AAA+ ATPase domain CL55_RS05300 IPR003959 ATPase, AAA-type, core CL55_RS05300 IPR027543 Lon protease, bacterial CL55_RS05300 IPR004815 Lon protease, bacterial/eukaryotic-type CL55_RS05300 IPR008269 Peptidase S16, Lon proteolytic domain CL55_RS05300 IPR027065 Lon protease CL55_RS05315 IPR036514 SGNH hydrolase superfamily CL55_RS05315 IPR013830 SGNH hydrolase-type esterase domain CL55_RS05320 IPR003439 ABC transporter-like CL55_RS05320 IPR003593 AAA+ ATPase domain CL55_RS05320 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05320 IPR017871 ABC transporter, conserved site CL55_RS05325 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal CL55_RS05325 IPR010073 Phosphoribosylformylglycinamidine synthase PurL CL55_RS05325 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain CL55_RS05325 IPR010918 PurM-like, C-terminal domain CL55_RS05325 IPR036676 PurM-like, C-terminal domain superfamily CL55_RS05325 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily CL55_RS05325 IPR029062 Class I glutamine amidotransferase-like CL55_RS05325 IPR036921 PurM-like, N-terminal domain superfamily CL55_RS05325 IPR017926 Glutamine amidotransferase CL55_RS05335 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CL55_RS05335 IPR015933 Aconitase B, HEAT-like domain CL55_RS05335 IPR004406 Aconitase B CL55_RS05335 IPR036008 Aconitase, iron-sulfur domain CL55_RS05335 IPR018136 Aconitase family, 4Fe-4S cluster binding site CL55_RS05335 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CL55_RS05335 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CL55_RS05335 IPR015932 Aconitase, domain 2 CL55_RS05335 IPR015929 Aconitase B, swivel CL55_RS05335 IPR036288 Aconitase B, HEAT-like domain superfamily CL55_RS05340 IPR029062 Class I glutamine amidotransferase-like CL55_RS05340 IPR004468 CTP synthase CL55_RS05340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05340 IPR033828 CTP synthase GATase domain CL55_RS05340 IPR017926 Glutamine amidotransferase CL55_RS05340 IPR017456 CTP synthase, N-terminal CL55_RS05345 IPR013785 Aldolase-type TIM barrel CL55_RS05345 IPR006269 3-deoxy-8-phosphooctulonate synthase CL55_RS05345 IPR006218 DAHP synthetase I/KDSA CL55_RS05350 IPR020811 Enolase, N-terminal CL55_RS05350 IPR020809 Enolase, conserved site CL55_RS05350 IPR020810 Enolase, C-terminal TIM barrel domain CL55_RS05350 IPR029017 Enolase-like, N-terminal CL55_RS05350 IPR036849 Enolase-like, C-terminal domain superfamily CL55_RS05350 IPR000941 Enolase CL55_RS05355 IPR023081 Cell division protein FtsB CL55_RS05355 IPR007060 Septum formation initiator FtsL/DivIC CL55_RS05360 IPR000397 Heat shock protein Hsp33 CL55_RS05360 IPR016154 Heat shock protein Hsp33, C-terminal CL55_RS05360 IPR016153 Heat shock protein Hsp33, N-terminal CL55_RS05360 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily CL55_RS05365 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 CL55_RS05365 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS05365 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding CL55_RS05365 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CL55_RS05365 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CL55_RS05365 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS05365 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial CL55_RS05365 IPR033910 Glutamyl-tRNA synthetase CL55_RS05365 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 CL55_RS05395 IPR000847 Transcription regulator HTH, LysR CL55_RS05395 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS05395 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS05395 IPR005119 LysR, substrate-binding CL55_RS05400 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CL55_RS05400 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CL55_RS05400 IPR029061 Thiamin diphosphate-binding fold CL55_RS05400 IPR006397 Glyoxylate carboligase CL55_RS05400 IPR029035 DHS-like NAD/FAD-binding domain superfamily CL55_RS05400 IPR012000 Thiamine pyrophosphate enzyme, central domain CL55_RS05405 IPR013022 Xylose isomerase-like, TIM barrel domain CL55_RS05405 IPR017643 Hydroxypyruvate isomerase CL55_RS05405 IPR026040 Hydroxypyruvate isomerase-like CL55_RS05405 IPR036237 Xylose isomerase-like superfamily CL55_RS05410 IPR036291 NAD(P)-binding domain superfamily CL55_RS05410 IPR015815 3-hydroxyisobutyrate dehydrogenase-related CL55_RS05410 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CL55_RS05410 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS05410 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site CL55_RS05410 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain CL55_RS05410 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS05410 IPR006398 2-hydroxy-3-oxopropionate reductase CL55_RS05435 IPR001130 TatD family CL55_RS05435 IPR018228 Deoxyribonuclease, TatD-related, conserved site CL55_RS05435 IPR032466 Metal-dependent hydrolase CL55_RS05435 IPR015991 Uncharacterised hydrolase TatD-type CL55_RS05440 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05440 IPR015199 DNA polymerase III, delta subunit, C-terminal CL55_RS05440 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CL55_RS05440 IPR004622 DNA polymerase III, delta prime subunit CL55_RS05445 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05445 IPR039430 Thymidylate kinase-like domain CL55_RS05445 IPR018094 Thymidylate kinase CL55_RS05450 IPR003770 Endolytic murein transglycosylase CL55_RS05455 IPR017703 YgfZ/GcvT conserved site CL55_RS05455 IPR023758 tRNA-modifying protein YgfZ CL55_RS05455 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CL55_RS05455 IPR006222 Aminomethyltransferase, folate-binding domain CL55_RS05470 IPR003846 Protein adenylyltransferase SelO CL55_RS05475 IPR028427 Peptide methionine sulfoxide reductase CL55_RS05475 IPR002579 Peptide methionine sulphoxide reductase MrsB CL55_RS05475 IPR011057 Mss4-like superfamily CL55_RS05480 IPR006008 Intracellular septation protein A CL55_RS05490 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CL55_RS05490 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site CL55_RS05495 IPR037523 Vicinal oxygen chelate (VOC) domain CL55_RS05495 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CL55_RS05495 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CL55_RS05495 IPR018146 Glyoxalase I, conserved site CL55_RS05495 IPR004361 Glyoxalase I CL55_RS05510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05510 IPR032781 ABC-transporter extension domain CL55_RS05510 IPR003439 ABC transporter-like CL55_RS05510 IPR003593 AAA+ ATPase domain CL55_RS05520 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CL55_RS05520 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CL55_RS05520 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CL55_RS05520 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CL55_RS05520 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CL55_RS05520 IPR006089 Acyl-CoA dehydrogenase, conserved site CL55_RS05520 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CL55_RS05525 IPR001763 Rhodanese-like domain CL55_RS05525 IPR036873 Rhodanese-like domain superfamily CL55_RS05525 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05525 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase CL55_RS05535 IPR029021 Protein-tyrosine phosphatase-like CL55_RS05535 IPR001279 Metallo-beta-lactamase CL55_RS05535 IPR005939 Beta-lactamase hydrolase-like CL55_RS05535 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS05545 IPR007272 Sulphur transport domain CL55_RS05560 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS05560 IPR001279 Metallo-beta-lactamase CL55_RS05560 IPR001018 Beta-lactamase, class-B, conserved site CL55_RS05570 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CL55_RS05570 IPR036907 5'-Nucleotidase, C-terminal domain superfamily CL55_RS05570 IPR008334 5'-Nucleotidase, C-terminal CL55_RS05570 IPR006179 5'-Nucleotidase/apyrase CL55_RS05570 IPR029052 Metallo-dependent phosphatase-like CL55_RS05570 IPR006146 5'-Nucleotidase, conserved site CL55_RS05580 IPR025710 L-cysteine S-thiosulfotransferase subunit SoxA CL55_RS05580 IPR036909 Cytochrome c-like domain superfamily CL55_RS05595 IPR009056 Cytochrome c-like domain CL55_RS05595 IPR002324 Cytochrome c, class ID CL55_RS05595 IPR036909 Cytochrome c-like domain superfamily CL55_RS05600 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP CL55_RS05600 IPR000572 Oxidoreductase, molybdopterin-binding domain CL55_RS05600 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily CL55_RS05605 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS05605 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS05605 IPR001845 HTH ArsR-type DNA-binding domain CL55_RS05605 IPR011991 ArsR-like helix-turn-helix domain CL55_RS05605 IPR018334 ArsR-type transcription regulator, HTH motif CL55_RS05610 IPR011867 Molybdate ABC transporter, permease protein CL55_RS05610 IPR035906 MetI-like superfamily CL55_RS05610 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS05615 IPR003439 ABC transporter-like CL55_RS05615 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal CL55_RS05615 IPR003593 AAA+ ATPase domain CL55_RS05615 IPR017871 ABC transporter, conserved site CL55_RS05615 IPR008995 Molybdate/tungstate binding, C-terminal CL55_RS05615 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05615 IPR041193 CysA, C-terminal regulatory domain CL55_RS05615 IPR005666 Sulphate transport system permease protein 1 CL55_RS05615 IPR024765 TOBE-like domain CL55_RS05620 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS05620 IPR036369 High potential iron-sulphur protein superfamily CL55_RS05620 IPR000170 High potential iron-sulphur protein CL55_RS05630 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS05630 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS05630 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CL55_RS05630 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS05630 IPR006234 O-succinylhomoserine sulfhydrylase CL55_RS05635 IPR029055 Nucleophile aminohydrolases, N-terminal CL55_RS05635 IPR017932 Glutamine amidotransferase type 2 domain CL55_RS05635 IPR035584 Amidophosphoribosyltransferase, N-terminal CL55_RS05635 IPR005854 Amidophosphoribosyltransferase CL55_RS05635 IPR029057 Phosphoribosyltransferase-like CL55_RS05635 IPR000836 Phosphoribosyltransferase domain CL55_RS05650 IPR013221 Mur ligase, central CL55_RS05650 IPR036615 Mur ligase, C-terminal domain superfamily CL55_RS05650 IPR001645 Folylpolyglutamate synthetase CL55_RS05650 IPR036565 Mur-like, catalytic domain superfamily CL55_RS05650 IPR004101 Mur ligase, C-terminal CL55_RS05650 IPR018109 Folylpolyglutamate synthetase, conserved site CL55_RS05655 IPR034733 Acetyl-CoA carboxylase CL55_RS05655 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit CL55_RS05655 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS05655 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CL55_RS05655 IPR041010 Acetyl-coA carboxylase zinc finger domain CL55_RS05660 IPR002028 Tryptophan synthase, alpha chain CL55_RS05660 IPR013785 Aldolase-type TIM barrel CL55_RS05660 IPR018204 Tryptophan synthase, alpha chain, active site CL55_RS05660 IPR011060 Ribulose-phosphate binding barrel CL55_RS05665 IPR001926 Pyridoxal-phosphate dependent enzyme CL55_RS05665 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CL55_RS05665 IPR023026 Tryptophan synthase beta chain/beta chain-like CL55_RS05665 IPR006653 Tryptophan synthase, beta chain, conserved site CL55_RS05665 IPR006654 Tryptophan synthase, beta chain CL55_RS05670 IPR013785 Aldolase-type TIM barrel CL55_RS05670 IPR011060 Ribulose-phosphate binding barrel CL55_RS05670 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) CL55_RS05675 IPR001406 Pseudouridine synthase I, TruA CL55_RS05675 IPR020103 Pseudouridine synthase, catalytic domain superfamily CL55_RS05675 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain CL55_RS05675 IPR020095 Pseudouridine synthase I, TruA, C-terminal CL55_RS05685 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site CL55_RS05685 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CL55_RS05685 IPR036291 NAD(P)-binding domain superfamily CL55_RS05685 IPR000534 Semialdehyde dehydrogenase, NAD-binding CL55_RS05685 IPR012080 Aspartate-semialdehyde dehydrogenase CL55_RS05685 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type CL55_RS05690 IPR004429 Isopropylmalate dehydrogenase CL55_RS05690 IPR024084 Isopropylmalate dehydrogenase-like domain CL55_RS05690 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CL55_RS05695 IPR004431 3-isopropylmalate dehydratase, small subunit CL55_RS05695 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain CL55_RS05695 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CL55_RS05695 IPR033940 3-isopropylmalate dehydratase, swivel domain CL55_RS05705 IPR018136 Aconitase family, 4Fe-4S cluster binding site CL55_RS05705 IPR036008 Aconitase, iron-sulfur domain CL55_RS05705 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CL55_RS05705 IPR004430 3-isopropylmalate dehydratase, large subunit CL55_RS05705 IPR033941 3-Isopropylmalate dehydratase, catalytic domain CL55_RS05705 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CL55_RS05710 IPR016143 Citrate synthase-like, small alpha subdomain CL55_RS05710 IPR002020 Citrate synthase CL55_RS05710 IPR019810 Citrate synthase active site CL55_RS05710 IPR024176 Citrate synthase, bacterial-type CL55_RS05710 IPR036969 Citrate synthase superfamily CL55_RS05710 IPR010953 Citrate synthase, type I CL55_RS05710 IPR016142 Citrate synthase-like, large alpha subdomain CL55_RS05715 IPR005631 Flavinator of succinate dehydrogenase CL55_RS05715 IPR036714 Flavinator of succinate dehydrogenase superfamily CL55_RS05720 IPR009051 Alpha-helical ferredoxin CL55_RS05720 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS05720 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS05720 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein CL55_RS05720 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS05720 IPR012675 Beta-grasp domain superfamily CL55_RS05720 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS05720 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal CL55_RS05725 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit CL55_RS05725 IPR011281 Succinate dehydrogenase, flavoprotein subunit CL55_RS05725 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CL55_RS05725 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CL55_RS05725 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily CL55_RS05725 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site CL55_RS05725 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS05725 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CL55_RS05730 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit CL55_RS05730 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit CL55_RS05730 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor CL55_RS05735 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit CL55_RS05735 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit CL55_RS05735 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit CL55_RS05735 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site CL55_RS05740 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CL55_RS05740 IPR000524 Transcription regulator HTH, GntR CL55_RS05740 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS05740 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS05740 IPR011663 UbiC transcription regulator-associated CL55_RS05745 IPR022383 Lactate/malate dehydrogenase, C-terminal CL55_RS05745 IPR036291 NAD(P)-binding domain superfamily CL55_RS05745 IPR010945 Malate dehydrogenase, type 2 CL55_RS05745 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CL55_RS05745 IPR001557 L-lactate/malate dehydrogenase CL55_RS05745 IPR001236 Lactate/malate dehydrogenase, N-terminal CL55_RS05760 IPR005583 Peroxide stress protein YaaA CL55_RS05765 IPR004839 Aminotransferase, class I/classII CL55_RS05765 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS05765 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS05765 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS05770 IPR010987 Glutathione S-transferase, C-terminal-like CL55_RS05770 IPR004046 Glutathione S-transferase, C-terminal CL55_RS05770 IPR036249 Thioredoxin-like superfamily CL55_RS05770 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CL55_RS05770 IPR004045 Glutathione S-transferase, N-terminal CL55_RS05775 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS05775 IPR022694 3-hydroxyacyl-CoA dehydrogenase CL55_RS05775 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CL55_RS05775 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS05775 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CL55_RS05775 IPR036291 NAD(P)-binding domain superfamily CL55_RS05775 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site CL55_RS05785 IPR003593 AAA+ ATPase domain CL55_RS05785 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CL55_RS05785 IPR003959 ATPase, AAA-type, core CL55_RS05785 IPR032423 AAA C-terminal domain CL55_RS05785 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05785 IPR021886 MgsA AAA+ ATPase C-terminal CL55_RS05795 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site CL55_RS05795 IPR029000 Cyclophilin-like domain superfamily CL55_RS05795 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain CL55_RS05795 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase CL55_RS05800 IPR006805 Anthranilate synthase component I, N-terminal CL55_RS05800 IPR015890 Chorismate-utilising enzyme, C-terminal CL55_RS05800 IPR005801 ADC synthase CL55_RS05800 IPR019999 Anthranilate synthase component I-like CL55_RS05800 IPR005802 Aminodeoxychorismate synthase, component I CL55_RS05810 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal CL55_RS05810 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase CL55_RS05810 IPR016181 Acyl-CoA N-acyltransferase CL55_RS05815 IPR007471 N-end aminoacyl transferase, N-terminal CL55_RS05815 IPR007472 N-end rule aminoacyl transferase, C-terminal CL55_RS05815 IPR030700 N-end rule aminoacyl transferase CL55_RS05815 IPR017138 Aspartate/glutamate leucyltransferase CL55_RS05815 IPR016181 Acyl-CoA N-acyltransferase CL55_RS05820 IPR005720 Dihydroorotate dehydrogenase domain CL55_RS05820 IPR005719 Dihydroorotate dehydrogenase, class 2 CL55_RS05820 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 CL55_RS05820 IPR001295 Dihydroorotate dehydrogenase, conserved site CL55_RS05820 IPR013785 Aldolase-type TIM barrel CL55_RS05825 IPR014757 Transcription regulator IclR, C-terminal CL55_RS05825 IPR005471 Transcription regulator IclR, N-terminal CL55_RS05825 IPR029016 GAF-like domain superfamily CL55_RS05825 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS05825 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS05830 IPR012338 Beta-lactamase/transpeptidase-like CL55_RS05830 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CL55_RS05830 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CL55_RS05840 IPR018968 Phasin CL55_RS05845 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS05845 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL55_RS05845 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CL55_RS05845 IPR006258 Dihydrolipoamide dehydrogenase CL55_RS05845 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CL55_RS05845 IPR023753 FAD/NAD(P)-binding domain CL55_RS05845 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CL55_RS05850 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CL55_RS05850 IPR011053 Single hybrid motif CL55_RS05850 IPR004167 Peripheral subunit-binding domain CL55_RS05850 IPR036625 E3-binding domain superfamily CL55_RS05850 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex CL55_RS05850 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CL55_RS05850 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CL55_RS05850 IPR000089 Biotin/lipoyl attachment CL55_RS05855 IPR041621 Pyruvate dehydrogenase E1 component, middle domain CL55_RS05855 IPR004660 Pyruvate dehydrogenase E1 component CL55_RS05855 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal CL55_RS05855 IPR005474 Transketolase, N-terminal CL55_RS05855 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CL55_RS05855 IPR029061 Thiamin diphosphate-binding fold CL55_RS05860 IPR001610 PAC motif CL55_RS05860 IPR013767 PAS fold CL55_RS05860 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS05860 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS05860 IPR005467 Histidine kinase domain CL55_RS05860 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS05860 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS05860 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS05860 IPR000014 PAS domain CL55_RS05860 IPR000700 PAS-associated, C-terminal CL55_RS05860 IPR035965 PAS domain superfamily CL55_RS05865 IPR011006 CheY-like superfamily CL55_RS05865 IPR016032 Signal transduction response regulator, C-terminal effector CL55_RS05865 IPR001789 Signal transduction response regulator, receiver domain CL55_RS05865 IPR000792 Transcription regulator LuxR, C-terminal CL55_RS05865 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS05870 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CL55_RS05870 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site CL55_RS05870 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL55_RS05870 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase CL55_RS05870 IPR036291 NAD(P)-binding domain superfamily CL55_RS05875 IPR001567 Peptidase M3A/M3B catalytic domain CL55_RS05875 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CL55_RS05885 IPR002293 Amino acid/polyamine transporter I CL55_RS05890 IPR037493 Exodeoxyribonuclease III-like CL55_RS05890 IPR005135 Endonuclease/exonuclease/phosphatase CL55_RS05890 IPR004808 AP endonuclease 1 CL55_RS05890 IPR020847 AP endonuclease 1, binding site CL55_RS05890 IPR020848 AP endonuclease 1, conserved site CL55_RS05890 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CL55_RS05895 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05895 IPR010114 DNA-binding transcriptional regulator NtrC CL55_RS05895 IPR025944 Sigma-54 interaction domain, conserved site CL55_RS05895 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CL55_RS05895 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CL55_RS05895 IPR002078 RNA polymerase sigma factor 54 interaction domain CL55_RS05895 IPR003593 AAA+ ATPase domain CL55_RS05895 IPR011006 CheY-like superfamily CL55_RS05895 IPR009057 Homeobox-like domain superfamily CL55_RS05895 IPR002197 DNA binding HTH domain, Fis-type CL55_RS05895 IPR001789 Signal transduction response regulator, receiver domain CL55_RS05900 IPR013767 PAS fold CL55_RS05900 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS05900 IPR000014 PAS domain CL55_RS05900 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS05900 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS05900 IPR005467 Histidine kinase domain CL55_RS05900 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS05900 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS05900 IPR035965 PAS domain superfamily CL55_RS05905 IPR027302 Glutamine synthetase, N-terminal conserved site CL55_RS05905 IPR001637 Glutamine synthetase class-I, adenylation site CL55_RS05905 IPR004809 Glutamine synthetase type I CL55_RS05905 IPR027303 Glutamine synthetase, glycine-rich site CL55_RS05905 IPR008146 Glutamine synthetase, catalytic domain CL55_RS05905 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CL55_RS05905 IPR036651 Glutamine synthetase, N-terminal domain superfamily CL55_RS05905 IPR008147 Glutamine synthetase, beta-Grasp domain CL55_RS05910 IPR008135 Competence-induced protein CinA CL55_RS05910 IPR001453 MoaB/Mog domain CL55_RS05910 IPR036425 MoaB/Mog-like domain superfamily CL55_RS05910 IPR036653 CinA-like, C-terminal CL55_RS05910 IPR008136 CinA, C-terminal CL55_RS05935 IPR010222 RNA helicase HrpA CL55_RS05935 IPR024590 RNA helicase HrpA, C-terminal CL55_RS05935 IPR003593 AAA+ ATPase domain CL55_RS05935 IPR011545 DEAD/DEAH box helicase domain CL55_RS05935 IPR001650 Helicase, C-terminal CL55_RS05935 IPR011709 Domain of unknown function DUF1605 CL55_RS05935 IPR007502 Helicase-associated domain CL55_RS05935 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS05935 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS05940 IPR016181 Acyl-CoA N-acyltransferase CL55_RS05940 IPR001048 Aspartate/glutamate/uridylate kinase CL55_RS05940 IPR000182 GNAT domain CL55_RS05940 IPR033719 N-acetylglutamate synthase, kinase-like domain CL55_RS05940 IPR010167 Amino-acid N-acetyltransferase CL55_RS05940 IPR036393 Acetylglutamate kinase-like superfamily CL55_RS05945 IPR007457 Fe(II) trafficking protein YggX CL55_RS05945 IPR036766 Fe(II) trafficking protein YggX superfamily CL55_RS05950 IPR004788 Ribose 5-phosphate isomerase, type A CL55_RS05950 IPR037171 NagB/RpiA transferase-like CL55_RS05950 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup CL55_RS05955 IPR013785 Aldolase-type TIM barrel CL55_RS05955 IPR004730 Transaldolase type 1 CL55_RS05955 IPR018225 Transaldolase, active site CL55_RS05955 IPR001585 Transaldolase/Fructose-6-phosphate aldolase CL55_RS05960 IPR036249 Thioredoxin-like superfamily CL55_RS05960 IPR017937 Thioredoxin, conserved site CL55_RS05960 IPR013766 Thioredoxin domain CL55_RS05960 IPR005746 Thioredoxin CL55_RS05965 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CL55_RS05965 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CL55_RS05965 IPR001537 tRNA/rRNA methyltransferase, SpoU type CL55_RS05965 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB CL55_RS05965 IPR004441 RNA methyltransferase TrmH family CL55_RS05965 IPR029028 Alpha/beta knot methyltransferases CL55_RS05965 IPR029064 50S ribosomal protein L30e-like CL55_RS05970 IPR001900 Ribonuclease II/R CL55_RS05970 IPR011129 Cold shock domain CL55_RS05970 IPR040476 RNase II/RNase R, cold shock domain CL55_RS05970 IPR013223 Ribonuclease B, N-terminal OB domain CL55_RS05970 IPR012340 Nucleic acid-binding, OB-fold CL55_RS05970 IPR004476 Ribonuclease II/ribonuclease R CL55_RS05970 IPR011805 Ribonuclease R CL55_RS05970 IPR013668 Ribonuclease R winged-helix domain CL55_RS05970 IPR022966 Ribonuclease II/R, conserved site CL55_RS05970 IPR003029 S1 domain CL55_RS05970 IPR022967 RNA-binding domain, S1 CL55_RS05980 IPR004370 4-oxalocrotonate tautomerase CL55_RS05980 IPR014347 Tautomerase/MIF superfamily CL55_RS05980 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type CL55_RS05985 IPR001303 Class II aldolase/adducin N-terminal CL55_RS05985 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CL55_RS05995 IPR002925 Dienelactone hydrolase CL55_RS05995 IPR029058 Alpha/Beta hydrolase fold CL55_RS06005 IPR001465 Malate synthase CL55_RS06005 IPR011076 Malate synthase-like superfamily CL55_RS06005 IPR023310 Malate synthase G, beta sub-domain CL55_RS06005 IPR006253 Malate synthase G CL55_RS06010 IPR042110 Adenylosuccinate synthetase, domain 2 CL55_RS06010 IPR018220 Adenylosuccinate synthase, GTP-binding site CL55_RS06010 IPR033128 Adenylosuccinate synthase, active site CL55_RS06010 IPR042109 Adenylosuccinate synthetase, domain 1 CL55_RS06010 IPR042111 Adenylosuccinate synthetase, domain 3 CL55_RS06010 IPR001114 Adenylosuccinate synthetase CL55_RS06010 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06015 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CL55_RS06015 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CL55_RS06015 IPR004517 ATP phosphoribosyltransferase regulatory subunit CL55_RS06020 IPR010200 HflC CL55_RS06020 IPR001107 Band 7 domain CL55_RS06020 IPR036013 Band 7/SPFH domain superfamily CL55_RS06025 IPR020980 Menbrane protein HflK, N-terminal CL55_RS06025 IPR010201 HflK CL55_RS06025 IPR001107 Band 7 domain CL55_RS06025 IPR001972 Stomatin family CL55_RS06025 IPR036013 Band 7/SPFH domain superfamily CL55_RS06030 IPR025121 GTPase HflX, N-terminal CL55_RS06030 IPR032305 GTP-binding protein, middle domain CL55_RS06030 IPR035647 EF-G domain III/V-like CL55_RS06030 IPR030394 HflX-type guanine nucleotide-binding (G) domain CL55_RS06030 IPR006073 GTP binding domain CL55_RS06030 IPR016496 GTPase HflX CL55_RS06030 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06030 IPR042108 GTPase HflX, N-terminal domain superfamily CL55_RS06035 IPR010920 LSM domain superfamily CL55_RS06035 IPR005001 RNA-binding protein Hfq CL55_RS06040 IPR015946 K homology domain-like, alpha/beta CL55_RS06040 IPR032859 GTPase Der, C-terminal KH-domain-like CL55_RS06040 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06040 IPR005225 Small GTP-binding protein domain CL55_RS06040 IPR006073 GTP binding domain CL55_RS06040 IPR031166 EngA-type guanine nucleotide-binding (G) domain CL55_RS06040 IPR016484 GTP-binding protein EngA CL55_RS06045 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CL55_RS06045 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CL55_RS06045 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CL55_RS06045 IPR017687 Outer membrane protein assembly factor BamB CL55_RS06045 IPR002372 Pyrrolo-quinoline quinone repeat CL55_RS06055 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CL55_RS06055 IPR033656 Histidyl-anticodon-binding CL55_RS06055 IPR006195 Aminoacyl-tRNA synthetase, class II CL55_RS06055 IPR004154 Anticodon-binding CL55_RS06055 IPR036621 Anticodon-binding domain superfamily CL55_RS06055 IPR015807 Histidine-tRNA ligase CL55_RS06055 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CL55_RS06060 IPR011005 Dihydropteroate synthase-like CL55_RS06060 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial CL55_RS06060 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type CL55_RS06065 IPR013785 Aldolase-type TIM barrel CL55_RS06065 IPR040072 Methyltransferase (Class A) CL55_RS06065 IPR027492 Dual-specificity RNA methyltransferase RlmN CL55_RS06065 IPR007197 Radical SAM CL55_RS06065 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr CL55_RS06070 IPR023005 Nucleoside diphosphate kinase, active site CL55_RS06070 IPR036850 Nucleoside diphosphate kinase-like domain superfamily CL55_RS06070 IPR034907 Nucleoside diphosphate kinase-like domain CL55_RS06070 IPR001564 Nucleoside diphosphate kinase CL55_RS06075 IPR006214 Bax inhibitor 1-related CL55_RS06080 IPR001387 Cro/C1-type helix-turn-helix domain CL55_RS06080 IPR014057 Uncharacterized protein HI1420 CL55_RS06080 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CL55_RS06085 IPR010280 (Uracil-5)-methyltransferase family CL55_RS06085 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD CL55_RS06085 IPR030391 RNA methyltransferase TrmA, conserved site CL55_RS06085 IPR012340 Nucleic acid-binding, OB-fold CL55_RS06085 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS06095 IPR018392 LysM domain CL55_RS06095 IPR011055 Duplicated hybrid motif CL55_RS06095 IPR016047 Peptidase M23 CL55_RS06095 IPR036779 LysM domain superfamily CL55_RS06100 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS06100 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase CL55_RS06105 IPR030048 Survival protein SurE CL55_RS06105 IPR002828 Survival protein SurE-like phosphatase/nucleotidase CL55_RS06105 IPR036523 SurE-like phosphatase/nucleotidase superfamily CL55_RS06110 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CL55_RS06110 IPR001036 Acriflavin resistance protein CL55_RS06110 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA CL55_RS06135 IPR034137 RecR, TOPRIM domain CL55_RS06135 IPR006171 TOPRIM domain CL55_RS06135 IPR023628 Recombination protein RecR, C4-type zinc finger CL55_RS06135 IPR023627 Recombination protein RecR CL55_RS06135 IPR000093 DNA recombination protein RecR CL55_RS06140 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CL55_RS06140 IPR004401 Nucleoid-associated protein YbaB/EbfC family CL55_RS06145 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily CL55_RS06145 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06145 IPR021029 DNA polymerase III, tau subunit, domain V CL55_RS06145 IPR012763 DNA polymerase III, subunit gamma/ tau CL55_RS06145 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV CL55_RS06145 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CL55_RS06145 IPR001270 ClpA/B family CL55_RS06145 IPR003593 AAA+ ATPase domain CL55_RS06145 IPR022754 DNA polymerase III, gamma subunit, domain III CL55_RS06185 IPR012675 Beta-grasp domain superfamily CL55_RS06185 IPR012676 TGS-like CL55_RS06185 IPR002912 ACT domain CL55_RS06185 IPR033655 RelA, TGS domain CL55_RS06185 IPR004095 TGS CL55_RS06185 IPR007685 RelA/SpoT CL55_RS06185 IPR003607 HD/PDEase domain CL55_RS06185 IPR004811 RelA/SpoT family CL55_RS06225 IPR013520 Exonuclease, RNase T/DNA polymerase III CL55_RS06225 IPR036397 Ribonuclease H superfamily CL55_RS06225 IPR012337 Ribonuclease H-like superfamily CL55_RS06230 IPR020761 Uncharacterised protein family UPF0114, bacteria CL55_RS06230 IPR005134 Uncharacterised protein family UPF0114 CL55_RS06235 IPR025188 Domain of unknown function DUF4113 CL55_RS06235 IPR017961 DNA polymerase, Y-family, little finger domain CL55_RS06235 IPR036775 DNA polymerase, Y-family, little finger domain superfamily CL55_RS06235 IPR024728 DNA polymerase type-Y, HhH motif CL55_RS06235 IPR001126 UmuC domain CL55_RS06240 IPR006197 Peptidase S24, LexA-like CL55_RS06240 IPR015927 Peptidase S24/S26A/S26B/S26C CL55_RS06240 IPR039418 LexA-like CL55_RS06240 IPR036286 LexA/Signal peptidase-like superfamily CL55_RS06245 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CL55_RS06245 IPR011829 Tartrate dehydrogenase CL55_RS06245 IPR024084 Isopropylmalate dehydrogenase-like domain CL55_RS06250 IPR042100 Bordetella uptake gene, domain 1 CL55_RS06250 IPR005064 Bordetella uptake gene CL55_RS06250 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS06260 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CL55_RS06260 IPR034739 UvrD/AddA helicase, N-terminal CL55_RS06260 IPR000212 DNA helicase, UvrD/REP type CL55_RS06260 IPR014152 DNA helicase subunit AddA CL55_RS06260 IPR014017 UvrD-like DNA helicase, C-terminal CL55_RS06260 IPR014016 UvrD-like helicase, ATP-binding domain CL55_RS06260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06260 IPR011604 Exonuclease, phage-type/RecB, C-terminal CL55_RS06260 IPR011335 Restriction endonuclease type II-like CL55_RS06270 IPR036249 Thioredoxin-like superfamily CL55_RS06270 IPR017937 Thioredoxin, conserved site CL55_RS06270 IPR013766 Thioredoxin domain CL55_RS06270 IPR005746 Thioredoxin CL55_RS06275 IPR011112 Rho termination factor, N-terminal CL55_RS06275 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06275 IPR012340 Nucleic acid-binding, OB-fold CL55_RS06275 IPR011129 Cold shock domain CL55_RS06275 IPR036269 Rho termination factor, N-terminal domain superfamily CL55_RS06275 IPR011113 Rho termination factor, RNA-binding domain CL55_RS06275 IPR004665 Transcription termination factor Rho CL55_RS06275 IPR041703 Transcription termination factor Rho, ATP binding domain CL55_RS06275 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CL55_RS06275 IPR003593 AAA+ ATPase domain CL55_RS06280 IPR034704 L28p-like CL55_RS06280 IPR002150 Ribosomal protein L31 CL55_RS06280 IPR027493 Ribosomal protein L31 type B CL55_RS06280 IPR042105 Ribosomal protein L31 superfamily CL55_RS06290 IPR002528 Multi antimicrobial extrusion protein CL55_RS06305 IPR042100 Bordetella uptake gene, domain 1 CL55_RS06305 IPR005064 Bordetella uptake gene CL55_RS06310 IPR022920 Disulphide bond formation protein DsbB CL55_RS06310 IPR003752 Disulphide bond formation protein DsbB/BdbC CL55_RS06310 IPR023380 DsbB-like superfamily CL55_RS06315 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS06315 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CL55_RS06315 IPR014748 Enoyl-CoA hydratase, C-terminal CL55_RS06315 IPR001753 Enoyl-CoA hydratase/isomerase CL55_RS06320 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily CL55_RS06320 IPR011234 Fumarylacetoacetase-like, C-terminal CL55_RS06325 IPR006603 PQ-loop repeat CL55_RS06330 IPR009056 Cytochrome c-like domain CL55_RS06330 IPR036909 Cytochrome c-like domain superfamily CL55_RS06330 IPR002323 Cytochrome c, class IE CL55_RS06335 IPR009061 Putative DNA-binding domain superfamily CL55_RS06335 IPR010093 SinI-like, DNA-binding domain CL55_RS06335 IPR024370 PBP domain CL55_RS06335 IPR041657 Helix-turn-helix domain, group 17 CL55_RS06340 IPR024370 PBP domain CL55_RS06345 IPR024370 PBP domain CL55_RS06350 IPR004606 Molybdenum-pterin binding CL55_RS06350 IPR008995 Molybdate/tungstate binding, C-terminal CL55_RS06350 IPR005116 Transport-associated OB, type 1 CL55_RS06360 IPR000182 GNAT domain CL55_RS06360 IPR039143 Glucosamine 6-phosphate N-acetyltransferase CL55_RS06360 IPR016181 Acyl-CoA N-acyltransferase CL55_RS06370 IPR014710 RmlC-like jelly roll fold CL55_RS06370 IPR011051 RmlC-like cupin domain superfamily CL55_RS06370 IPR010300 Cysteine dioxygenase type I CL55_RS06375 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06375 IPR014014 RNA helicase, DEAD-box type, Q motif CL55_RS06375 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS06375 IPR028622 ATP-dependent RNA helicase RhlE CL55_RS06375 IPR011545 DEAD/DEAH box helicase domain CL55_RS06375 IPR001650 Helicase, C-terminal CL55_RS06375 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CL55_RS06380 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site CL55_RS06380 IPR015815 3-hydroxyisobutyrate dehydrogenase-related CL55_RS06380 IPR011548 3-hydroxyisobutyrate dehydrogenase CL55_RS06380 IPR036291 NAD(P)-binding domain superfamily CL55_RS06380 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS06380 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain CL55_RS06380 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CL55_RS06380 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS06395 IPR036873 Rhodanese-like domain superfamily CL55_RS06395 IPR023695 Thiosulfate sulfurtransferase, bacterial CL55_RS06395 IPR001763 Rhodanese-like domain CL55_RS06410 IPR001486 Truncated hemoglobin CL55_RS06410 IPR009050 Globin-like superfamily CL55_RS06410 IPR019795 Globin, bacterial-like, conserved site CL55_RS06410 IPR012292 Globin/Protoglobin CL55_RS06415 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like CL55_RS06415 IPR023166 HI0933-like insert domain superfamily CL55_RS06415 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS06435 IPR036652 YjeF N-terminal domain superfamily CL55_RS06435 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr CL55_RS06435 IPR029056 Ribokinase-like CL55_RS06435 IPR004443 YjeF N-terminal domain CL55_RS06435 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase CL55_RS06440 IPR000620 EamA domain CL55_RS06450 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS06450 IPR000192 Aminotransferase class V domain CL55_RS06450 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CL55_RS06450 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS06450 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS06450 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase CL55_RS06460 IPR037396 FMN hydroxy acid dehydrogenase domain CL55_RS06460 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site CL55_RS06460 IPR013785 Aldolase-type TIM barrel CL55_RS06460 IPR020920 L-lactate dehydrogenase, bacterial CL55_RS06460 IPR000262 FMN-dependent dehydrogenase CL55_RS06460 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent CL55_RS06470 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CL55_RS06470 IPR013785 Aldolase-type TIM barrel CL55_RS06475 IPR005119 LysR, substrate-binding CL55_RS06475 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS06475 IPR000847 Transcription regulator HTH, LysR CL55_RS06475 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS06480 IPR024922 Rubredoxin CL55_RS06480 IPR024934 Rubredoxin-like domain CL55_RS06480 IPR024935 Rubredoxin domain CL55_RS06480 IPR018527 Rubredoxin, iron-binding site CL55_RS06485 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS06485 IPR023753 FAD/NAD(P)-binding domain CL55_RS06485 IPR041364 Rubredoxin binding domain CL55_RS06495 IPR019833 Manganese/iron superoxide dismutase, binding site CL55_RS06495 IPR001189 Manganese/iron superoxide dismutase CL55_RS06495 IPR019832 Manganese/iron superoxide dismutase, C-terminal CL55_RS06495 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily CL55_RS06495 IPR019831 Manganese/iron superoxide dismutase, N-terminal CL55_RS06495 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily CL55_RS06500 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS06500 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS06500 IPR036291 NAD(P)-binding domain superfamily CL55_RS06500 IPR011294 3-hydroxybutyrate dehydrogenase CL55_RS06505 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CL55_RS06505 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CL55_RS06505 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CL55_RS06505 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CL55_RS06510 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS06510 IPR002888 [2Fe-2S]-binding CL55_RS06510 IPR036884 [2Fe-2S]-binding domain superfamily CL55_RS06510 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS06510 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CL55_RS06510 IPR012675 Beta-grasp domain superfamily CL55_RS06515 IPR016166 FAD-binding domain, PCMH-type CL55_RS06515 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily CL55_RS06515 IPR016167 FAD-binding, type PCMH, subdomain 1 CL55_RS06515 IPR016169 FAD-binding, type PCMH, subdomain 2 CL55_RS06515 IPR002346 Molybdopterin dehydrogenase, FAD-binding CL55_RS06515 IPR005107 CO dehydrogenase flavoprotein, C-terminal CL55_RS06515 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS06545 IPR001851 ABC transporter, permease CL55_RS06550 IPR001851 ABC transporter, permease CL55_RS06550 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal CL55_RS06555 IPR003593 AAA+ ATPase domain CL55_RS06555 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06555 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CL55_RS06555 IPR003439 ABC transporter-like CL55_RS06555 IPR017871 ABC transporter, conserved site CL55_RS06560 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein CL55_RS06560 IPR003593 AAA+ ATPase domain CL55_RS06560 IPR003439 ABC transporter-like CL55_RS06560 IPR017871 ABC transporter, conserved site CL55_RS06560 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06570 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CL55_RS06570 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CL55_RS06570 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CL55_RS06570 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CL55_RS06570 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CL55_RS06570 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CL55_RS06570 IPR006089 Acyl-CoA dehydrogenase, conserved site CL55_RS06575 IPR023606 CoA-transferase family III domain superfamily CL55_RS06575 IPR003673 CoA-transferase family III CL55_RS06580 IPR030840 Cardiolipin synthase A CL55_RS06580 IPR022924 Cardiolipin synthase CL55_RS06580 IPR027379 Cardiolipin synthase N-terminal CL55_RS06580 IPR025202 Phospholipase D-like domain CL55_RS06580 IPR001736 Phospholipase D/Transphosphatidylase CL55_RS06585 IPR005135 Endonuclease/exonuclease/phosphatase CL55_RS06585 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CL55_RS06595 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS06595 IPR035906 MetI-like superfamily CL55_RS06600 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06600 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain CL55_RS06600 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal CL55_RS06600 IPR017871 ABC transporter, conserved site CL55_RS06600 IPR018449 NIL domain CL55_RS06600 IPR026253 Methionine import ATP-binding protein MetN CL55_RS06600 IPR003593 AAA+ ATPase domain CL55_RS06600 IPR003439 ABC transporter-like CL55_RS06620 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS06620 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS06620 IPR000813 7Fe ferredoxin CL55_RS06625 IPR009010 Aspartate decarboxylase-like domain superfamily CL55_RS06625 IPR006443 Formate dehydrogenase-N, alpha subunit CL55_RS06625 IPR006657 Molybdopterin dinucleotide-binding domain CL55_RS06625 IPR006656 Molybdopterin oxidoreductase CL55_RS06625 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CL55_RS06625 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CL55_RS06625 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CL55_RS06625 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS06655 IPR000808 Mrp, conserved site CL55_RS06655 IPR019591 Mrp/NBP35 ATP-binding protein CL55_RS06655 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06655 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CL55_RS06665 IPR023214 HAD superfamily CL55_RS06665 IPR006122 Heavy metal-associated domain, copper ion-binding CL55_RS06665 IPR036163 Heavy metal-associated domain superfamily CL55_RS06665 IPR027256 P-type ATPase, subfamily IB CL55_RS06665 IPR036412 HAD-like superfamily CL55_RS06665 IPR008250 P-type ATPase, A domain superfamily CL55_RS06665 IPR001757 P-type ATPase CL55_RS06665 IPR023298 P-type ATPase, transmembrane domain superfamily CL55_RS06665 IPR018303 P-type ATPase, phosphorylation site CL55_RS06665 IPR017969 Heavy-metal-associated, conserved site CL55_RS06665 IPR006121 Heavy metal-associated domain, HMA CL55_RS06665 IPR023299 P-type ATPase, cytoplasmic domain N CL55_RS06695 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS06695 IPR007473 Ribosomal RNA large subunit methyltransferase J CL55_RS06715 IPR005475 Transketolase-like, pyrimidine-binding domain CL55_RS06715 IPR005474 Transketolase, N-terminal CL55_RS06715 IPR005477 Deoxyxylulose-5-phosphate synthase CL55_RS06715 IPR029061 Thiamin diphosphate-binding fold CL55_RS06715 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CL55_RS06715 IPR020826 Transketolase binding site CL55_RS06715 IPR033248 Transketolase, C-terminal domain CL55_RS06720 IPR018214 Glutamyl-tRNA reductase, conserved site CL55_RS06720 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal CL55_RS06720 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily CL55_RS06720 IPR036291 NAD(P)-binding domain superfamily CL55_RS06720 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CL55_RS06720 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily CL55_RS06720 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase CL55_RS06720 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain CL55_RS06730 IPR011777 Geranylgeranyl reductase family CL55_RS06730 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS06730 IPR010253 Geranylgeranyl reductase, plant/prokaryotic CL55_RS06735 IPR004896 PucC-related CL55_RS06735 IPR020846 Major facilitator superfamily domain CL55_RS06735 IPR026036 PucC protein CL55_RS06735 IPR036259 MFS transporter superfamily CL55_RS06740 IPR006372 Bacteriochlorophyll/chlorophyll synthetase CL55_RS06740 IPR000537 UbiA prenyltransferase family CL55_RS06745 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CL55_RS06755 IPR009078 Ferritin-like superfamily CL55_RS06755 IPR003251 Rubrerythrin CL55_RS06755 IPR012347 Ferritin-like CL55_RS06755 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase CL55_RS06780 IPR004896 PucC-related CL55_RS06780 IPR036259 MFS transporter superfamily CL55_RS06780 IPR026036 PucC protein CL55_RS06785 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS06785 IPR010251 Magnesium-protoporphyrin IX methyltransferase CL55_RS06785 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal CL55_RS06785 IPR007848 Methyltransferase small domain CL55_RS06790 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein CL55_RS06790 IPR030655 NifH/chlL conserved site CL55_RS06790 IPR000392 NifH/frxC family CL55_RS06790 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06795 IPR022571 Magnesium chelatase, subunit H, N-terminal CL55_RS06795 IPR003672 CobN/magnesium chelatase CL55_RS06800 IPR016209 Protochlorophyllide reductase, ChlB, light independent CL55_RS06800 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal CL55_RS06800 IPR042298 Proto-chlorophyllide reductase, C-terminal CL55_RS06800 IPR005969 Light-independent protochlorophyllide reductase, B subunit CL55_RS06800 IPR000510 Nitrogenase/oxidoreductase, component 1 CL55_RS06805 IPR005970 Light-independent protochlorophyllide reductase, N subunit CL55_RS06805 IPR000510 Nitrogenase/oxidoreductase, component 1 CL55_RS06810 IPR009905 2-vinyl bacteriochlorophyllide hydratase CL55_RS06820 IPR011785 Transcription regulator PpsR CL55_RS06820 IPR000014 PAS domain CL55_RS06820 IPR035965 PAS domain superfamily CL55_RS06820 IPR009057 Homeobox-like domain superfamily CL55_RS06820 IPR002197 DNA binding HTH domain, Fis-type CL55_RS06830 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS06830 IPR014105 Carotenoid/retinoid oxidoreductase CL55_RS06830 IPR002937 Amine oxidase CL55_RS06840 IPR033904 Trans-Isoprenyl Diphosphate Synthases, head-to-head CL55_RS06840 IPR019845 Squalene/phytoene synthase, conserved site CL55_RS06840 IPR008949 Isoprenoid synthase domain superfamily CL55_RS06845 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS06845 IPR014105 Carotenoid/retinoid oxidoreductase CL55_RS06845 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site CL55_RS06845 IPR002937 Amine oxidase CL55_RS06850 IPR023119 Multihaem cytochrome, PRC subunit superfamily CL55_RS06850 IPR036280 Multiheme cytochrome superfamily CL55_RS06850 IPR011031 Multihaem cytochrome CL55_RS06850 IPR003158 Photosynthetic reaction centre, cytochrome c subunit CL55_RS06855 IPR005781 Photosynthetic reaction centre, M subunit CL55_RS06855 IPR000484 Photosynthetic reaction centre, L/M CL55_RS06855 IPR036854 Photosystem II protein D1/D2 superfamily CL55_RS06860 IPR000484 Photosynthetic reaction centre, L/M CL55_RS06860 IPR005871 Photosynthetic reaction centre, L subunit CL55_RS06860 IPR036854 Photosystem II protein D1/D2 superfamily CL55_RS06870 IPR035889 Light-harvesting complex CL55_RS06870 IPR023623 Antenna complex, beta subunit, conserved site CL55_RS06870 IPR002362 Antenna complex, beta subunit CL55_RS06870 IPR000066 Antenna complex, alpha/beta subunit CL55_RS06875 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal CL55_RS06875 IPR010244 Chlorophyllide reductase subunit Z CL55_RS06875 IPR000510 Nitrogenase/oxidoreductase, component 1 CL55_RS06875 IPR016209 Protochlorophyllide reductase, ChlB, light independent CL55_RS06880 IPR016209 Protochlorophyllide reductase, ChlB, light independent CL55_RS06880 IPR000510 Nitrogenase/oxidoreductase, component 1 CL55_RS06880 IPR010245 Chlorophyllide reductase subunit Y CL55_RS06885 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06885 IPR010246 Chlorophyllide reductase iron protein subunit X CL55_RS06885 IPR030655 NifH/chlL conserved site CL55_RS06885 IPR000392 NifH/frxC family CL55_RS06890 IPR005903 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase CL55_RS06890 IPR013154 Alcohol dehydrogenase, N-terminal CL55_RS06890 IPR011032 GroES-like superfamily CL55_RS06890 IPR036291 NAD(P)-binding domain superfamily CL55_RS06895 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain CL55_RS06895 IPR016461 O-methyltransferase COMT-type CL55_RS06895 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS06895 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS06895 IPR001077 O-methyltransferase domain CL55_RS06900 IPR008949 Isoprenoid synthase domain superfamily CL55_RS06900 IPR000092 Polyprenyl synthetase CL55_RS06900 IPR033749 Polyprenyl synthetase, conserved site CL55_RS06905 IPR000073 Alpha/beta hydrolase fold-1 CL55_RS06905 IPR029058 Alpha/Beta hydrolase fold CL55_RS06905 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase CL55_RS06910 IPR036465 von Willebrand factor A-like domain superfamily CL55_RS06910 IPR002035 von Willebrand factor, type A CL55_RS06910 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06910 IPR011776 Magnesium chelatase, ATPase subunit D CL55_RS06910 IPR041628 ChlI/MoxR, AAA lid domain CL55_RS06915 IPR003593 AAA+ ATPase domain CL55_RS06915 IPR011775 Magnesium chelatase, ATPase subunit I CL55_RS06915 IPR000523 Magnesium chelatase ChlI domain CL55_RS06915 IPR041628 ChlI/MoxR, AAA lid domain CL55_RS06915 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06920 IPR003593 AAA+ ATPase domain CL55_RS06920 IPR011527 ABC transporter type 1, transmembrane domain CL55_RS06920 IPR003439 ABC transporter-like CL55_RS06920 IPR017871 ABC transporter, conserved site CL55_RS06920 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06920 IPR039421 Type I protein exporter CL55_RS06920 IPR036640 ABC transporter type 1, transmembrane domain superfamily CL55_RS06935 IPR003507 Peptidase family S66 CL55_RS06935 IPR040921 LD-carboxypeptidase, C-terminal CL55_RS06935 IPR040449 LD-carboxypeptidase, N-terminal CL55_RS06935 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CL55_RS06935 IPR029062 Class I glutamine amidotransferase-like CL55_RS06935 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CL55_RS06940 IPR028883 tRNA-specific adenosine deaminase CL55_RS06940 IPR016193 Cytidine deaminase-like CL55_RS06940 IPR002125 Cytidine and deoxycytidylate deaminase domain CL55_RS06940 IPR016192 APOBEC/CMP deaminase, zinc-binding CL55_RS06945 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily CL55_RS06945 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family CL55_RS06950 IPR007197 Radical SAM CL55_RS06950 IPR024924 7-carboxy-7-deazaguanine synthase-like CL55_RS06950 IPR013785 Aldolase-type TIM barrel CL55_RS06950 IPR030977 7-carboxy-7-deazaguanine synthase, Cx14CxxC-type CL55_RS06970 IPR009078 Ferritin-like superfamily CL55_RS06970 IPR007402 Protein of unknown function DUF455 CL55_RS06970 IPR011197 Uncharacterised conserved protein UCP012318 CL55_RS06975 IPR002932 Glutamate synthase domain CL55_RS06975 IPR027283 Glutamate synthase large subunit-like protein, bacteria CL55_RS06975 IPR013785 Aldolase-type TIM barrel CL55_RS06975 IPR024188 Glutamate synthase large subunit-like protein CL55_RS06980 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS06980 IPR005769 ABC transporter, permease PhnE/PtxC CL55_RS06980 IPR035906 MetI-like superfamily CL55_RS06985 IPR035906 MetI-like superfamily CL55_RS06985 IPR005769 ABC transporter, permease PhnE/PtxC CL55_RS06985 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CL55_RS06990 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS06990 IPR012693 ABC transporter, phosphonate import, PhnC CL55_RS06990 IPR003593 AAA+ ATPase domain CL55_RS06990 IPR017871 ABC transporter, conserved site CL55_RS06990 IPR003439 ABC transporter-like CL55_RS06995 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein CL55_RS07015 IPR029062 Class I glutamine amidotransferase-like CL55_RS07015 IPR017926 Glutamine amidotransferase CL55_RS07015 IPR001674 GMP synthase, C-terminal CL55_RS07015 IPR004739 GMP synthase, glutamine amidotransferase CL55_RS07015 IPR022955 GMP synthase CL55_RS07015 IPR025777 GMP synthetase ATP pyrophosphatase domain CL55_RS07015 IPR022310 NAD/GMP synthase CL55_RS07015 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS07020 IPR013785 Aldolase-type TIM barrel CL55_RS07020 IPR000644 CBS domain CL55_RS07020 IPR005990 Inosine-5'-monophosphate dehydrogenase CL55_RS07020 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CL55_RS07020 IPR001093 IMP dehydrogenase/GMP reductase CL55_RS07025 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CL55_RS07025 IPR005346 RnfH protein CL55_RS07025 IPR037021 RnfH superfamily CL55_RS07030 IPR023393 START-like domain superfamily CL55_RS07030 IPR005031 Coenzyme Q-binding protein COQ10, START domain CL55_RS07035 IPR000037 SsrA-binding protein CL55_RS07035 IPR020081 SsrA-binding protein, conserved site CL55_RS07035 IPR023620 Small protein B CL55_RS07040 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CL55_RS07040 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding CL55_RS07040 IPR036637 Phosphohistidine domain superfamily CL55_RS07040 IPR023151 PEP-utilising enzyme, conserved site CL55_RS07040 IPR000121 PEP-utilising enzyme, C-terminal CL55_RS07040 IPR018274 PEP-utilising enzyme, active site CL55_RS07040 IPR008279 PEP-utilising enzyme, mobile domain CL55_RS07040 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS07040 IPR040442 Pyruvate kinase-like domain superfamily CL55_RS07040 IPR006319 Phosphoenolpyruvate synthase CL55_RS07045 IPR026530 Phosphoenolpyruvate synthase regulatory protein CL55_RS07045 IPR005177 Bifunctional kinase-pyrophosphorylase CL55_RS07050 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CL55_RS07050 IPR029028 Alpha/beta knot methyltransferases CL55_RS07050 IPR029064 50S ribosomal protein L30e-like CL55_RS07050 IPR001537 tRNA/rRNA methyltransferase, SpoU type CL55_RS07050 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CL55_RS07055 IPR036397 Ribonuclease H superfamily CL55_RS07055 IPR012337 Ribonuclease H-like superfamily CL55_RS07055 IPR022898 Ribonuclease HII CL55_RS07055 IPR001352 Ribonuclease HII/HIII CL55_RS07055 IPR024567 Ribonuclease HII/HIII domain CL55_RS07060 IPR003835 Glycosyl transferase, family 19 CL55_RS07065 IPR011004 Trimeric LpxA-like superfamily CL55_RS07065 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase CL55_RS07065 IPR001451 Hexapeptide repeat CL55_RS07065 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily CL55_RS07065 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal CL55_RS07070 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CL55_RS07070 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CL55_RS07070 IPR029069 HotDog domain superfamily CL55_RS07075 IPR011004 Trimeric LpxA-like superfamily CL55_RS07075 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region CL55_RS07075 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD CL55_RS07075 IPR018357 Hexapeptide transferase, conserved site CL55_RS07075 IPR001451 Hexapeptide repeat CL55_RS07085 IPR023707 Outer membrane protein assembly factor BamA CL55_RS07085 IPR000184 Bacterial surface antigen (D15) CL55_RS07085 IPR039910 Surface antigen D15-like CL55_RS07085 IPR010827 POTRA domain, BamA/TamA-like CL55_RS07085 IPR034746 POTRA domain CL55_RS07090 IPR036034 PDZ superfamily CL55_RS07090 IPR041489 PDZ domain 6 CL55_RS07090 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase CL55_RS07090 IPR008915 Peptidase M50 CL55_RS07090 IPR001478 PDZ domain CL55_RS07095 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal CL55_RS07095 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase CL55_RS07095 IPR036291 NAD(P)-binding domain superfamily CL55_RS07095 IPR036169 DXP reductoisomerase, C-terminal domain superfamily CL55_RS07095 IPR026877 DXP reductoisomerase C-terminal domain CL55_RS07095 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal CL55_RS07100 IPR000374 Phosphatidate cytidylyltransferase CL55_RS07105 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site CL55_RS07105 IPR036424 Decaprenyl diphosphate synthase-like superfamily CL55_RS07105 IPR001441 Decaprenyl diphosphate synthase-like CL55_RS07110 IPR036191 RRF superfamily CL55_RS07110 IPR002661 Ribosome recycling factor CL55_RS07110 IPR023584 Ribosome recycling factor domain CL55_RS07115 IPR011817 Uridylate kinase CL55_RS07115 IPR015963 Uridylate kinase, bacteria CL55_RS07115 IPR036393 Acetylglutamate kinase-like superfamily CL55_RS07115 IPR001048 Aspartate/glutamate/uridylate kinase CL55_RS07120 IPR009060 UBA-like superfamily CL55_RS07120 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation CL55_RS07120 IPR001816 Translation elongation factor EFTs/EF1B CL55_RS07120 IPR036402 Elongation factor Ts, dimerisation domain superfamily CL55_RS07120 IPR018101 Translation elongation factor Ts, conserved site CL55_RS07125 IPR001865 Ribosomal protein S2 CL55_RS07125 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid CL55_RS07125 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CL55_RS07130 IPR001714 Peptidase M24, methionine aminopeptidase CL55_RS07130 IPR000994 Peptidase M24 CL55_RS07130 IPR036005 Creatinase/aminopeptidase-like CL55_RS07130 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CL55_RS07135 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase CL55_RS07135 IPR003607 HD/PDEase domain CL55_RS07135 IPR002934 Polymerase, nucleotidyl transferase domain CL55_RS07135 IPR006674 HD domain CL55_RS07135 IPR002912 ACT domain CL55_RS07135 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme CL55_RS07140 IPR020084 NUDIX hydrolase, conserved site CL55_RS07140 IPR033713 Phosphatase NudJ CL55_RS07140 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS07140 IPR000086 NUDIX hydrolase domain CL55_RS07140 IPR020476 NUDIX hydrolase CL55_RS07145 IPR033136 NAD-dependent DNA ligase, conserved site CL55_RS07145 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type CL55_RS07145 IPR010994 RuvA domain 2-like CL55_RS07145 IPR012340 Nucleic acid-binding, OB-fold CL55_RS07145 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CL55_RS07145 IPR013840 NAD-dependent DNA ligase, N-terminal CL55_RS07145 IPR013839 NAD-dependent DNA ligase, adenylation CL55_RS07145 IPR001679 NAD-dependent DNA ligase CL55_RS07145 IPR001357 BRCT domain CL55_RS07145 IPR018239 NAD-dependent DNA ligase, active site CL55_RS07145 IPR041663 DisA/LigA, helix-hairpin-helix motif CL55_RS07145 IPR004150 NAD-dependent DNA ligase, OB-fold CL55_RS07145 IPR036420 BRCT domain superfamily CL55_RS07155 IPR036277 SMCs flexible hinge superfamily CL55_RS07155 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07155 IPR003395 RecF/RecN/SMC, N-terminal CL55_RS07155 IPR024704 Structural maintenance of chromosomes protein CL55_RS07155 IPR010935 SMCs flexible hinge CL55_RS07155 IPR011890 Structural maintenance of chromosomes protein, prokaryotic CL55_RS07160 IPR011004 Trimeric LpxA-like superfamily CL55_RS07160 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily CL55_RS07160 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 CL55_RS07160 IPR001451 Hexapeptide repeat CL55_RS07160 IPR018357 Hexapeptide transferase, conserved site CL55_RS07160 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family CL55_RS07165 IPR036264 Bacterial exopeptidase dimerisation domain CL55_RS07165 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria CL55_RS07165 IPR011650 Peptidase M20, dimerisation domain CL55_RS07165 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CL55_RS07165 IPR002933 Peptidase M20 CL55_RS07170 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase CL55_RS07170 IPR004556 Methyltransferase HemK-like CL55_RS07170 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CL55_RS07170 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS07170 IPR007848 Methyltransferase small domain CL55_RS07175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07175 IPR003593 AAA+ ATPase domain CL55_RS07175 IPR004504 DNA repair protein RadA CL55_RS07175 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CL55_RS07175 IPR041166 LapB, rubredoxin metal binding domain CL55_RS07175 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS07175 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS07185 IPR023051 Potassium uptake protein, low affinity, Kup CL55_RS07185 IPR003855 Potassium transporter CL55_RS07215 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS07215 IPR004797 Competence protein ComEC/Rec2 CL55_RS07215 IPR001279 Metallo-beta-lactamase CL55_RS07215 IPR004477 ComEC/Rec2-related protein CL55_RS07215 IPR035681 ComA-like, MBL domain CL55_RS07220 IPR001130 TatD family CL55_RS07220 IPR018228 Deoxyribonuclease, TatD-related, conserved site CL55_RS07220 IPR032466 Metal-dependent hydrolase CL55_RS07225 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07225 IPR003439 ABC transporter-like CL55_RS07225 IPR011924 Lipoprotein releasing system, ATP-binding protein CL55_RS07225 IPR017871 ABC transporter, conserved site CL55_RS07225 IPR015854 ABC transporter, lipoprotein release, LolD CL55_RS07225 IPR003593 AAA+ ATPase domain CL55_RS07230 IPR003838 ABC transporter permease protein domain CL55_RS07230 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E CL55_RS07230 IPR025857 MacB-like periplasmic core domain CL55_RS07240 IPR041122 RecJ, OB domain CL55_RS07240 IPR004610 Bacterial RecJ exonuclease CL55_RS07240 IPR038763 DHH phosphoesterase superfamily CL55_RS07240 IPR001667 DDH domain CL55_RS07240 IPR003156 DHHA1 domain CL55_RS07245 IPR000352 Peptide chain release factor class I CL55_RS07245 IPR004374 Peptide chain release factor 2 CL55_RS07245 IPR005139 Peptide chain release factor CL55_RS07250 IPR006195 Aminoacyl-tRNA synthetase, class II CL55_RS07250 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CL55_RS07250 IPR002313 Lysine-tRNA ligase, class II CL55_RS07250 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CL55_RS07250 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal CL55_RS07250 IPR012340 Nucleic acid-binding, OB-fold CL55_RS07270 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CL55_RS07270 IPR017927 FAD-binding domain, ferredoxin reductase-type CL55_RS07270 IPR001433 Oxidoreductase FAD/NAD(P)-binding CL55_RS07270 IPR033892 Ferredoxin--NADP reductase, bacteria CL55_RS07270 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain CL55_RS07270 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase CL55_RS07270 IPR017938 Riboflavin synthase-like beta-barrel CL55_RS07275 IPR018383 Uncharacterised protein family UPF0324, prokaryote CL55_RS07280 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS07280 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS07280 IPR011663 UbiC transcription regulator-associated CL55_RS07280 IPR000524 Transcription regulator HTH, GntR CL55_RS07280 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CL55_RS07285 IPR007392 D-galactarate/Altronate dehydratase, C-terminal CL55_RS07290 IPR013974 SAF domain CL55_RS07295 IPR003767 Malate/L-lactate dehydrogenase-like CL55_RS07295 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily CL55_RS07300 IPR005064 Bordetella uptake gene CL55_RS07300 IPR042100 Bordetella uptake gene, domain 1 CL55_RS07310 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CL55_RS07310 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CL55_RS07310 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit CL55_RS07310 IPR005884 Fumarate reductase, flavoprotein subunit CL55_RS07310 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site CL55_RS07310 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily CL55_RS07310 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CL55_RS07310 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS07315 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain CL55_RS07315 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily CL55_RS07320 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain CL55_RS07320 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain CL55_RS07320 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily CL55_RS07320 IPR011167 Iron-dependent fumarate hydratase CL55_RS07335 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS07335 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS07335 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein CL55_RS07335 IPR009051 Alpha-helical ferredoxin CL55_RS07335 IPR012675 Beta-grasp domain superfamily CL55_RS07335 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal CL55_RS07335 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS07340 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS07340 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS07340 IPR005119 LysR, substrate-binding CL55_RS07340 IPR000847 Transcription regulator HTH, LysR CL55_RS07355 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS07355 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS07355 IPR001055 Adrenodoxin CL55_RS07355 IPR018298 Adrenodoxin, iron-sulphur binding site CL55_RS07355 IPR012675 Beta-grasp domain superfamily CL55_RS07355 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria CL55_RS07360 IPR010236 ISC system FeS cluster assembly, HscA chaperone CL55_RS07360 IPR018181 Heat shock protein 70, conserved site CL55_RS07360 IPR042039 HscA chaperone, nucleotide-binding domain CL55_RS07360 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily CL55_RS07360 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily CL55_RS07360 IPR013126 Heat shock protein 70 family CL55_RS07365 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain CL55_RS07365 IPR036869 Chaperone J-domain superfamily CL55_RS07365 IPR001623 DnaJ domain CL55_RS07365 IPR004640 Co-chaperone Hsc20 CL55_RS07365 IPR036386 HscB, C-terminal domain superfamily CL55_RS07370 IPR016092 FeS cluster insertion protein CL55_RS07370 IPR035903 HesB-like domain superfamily CL55_RS07370 IPR011302 Iron-binding protein IscA, proteobacteria CL55_RS07370 IPR017870 FeS cluster insertion, C-terminal, conserved site CL55_RS07370 IPR000361 FeS cluster biogenesis CL55_RS07375 IPR011339 ISC system FeS cluster assembly, IscU scaffold CL55_RS07375 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal CL55_RS07380 IPR000192 Aminotransferase class V domain CL55_RS07380 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CL55_RS07380 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS07380 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS07380 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS07380 IPR016454 Cysteine desulfurase CL55_RS07380 IPR010240 Cysteine desulfurase IscS CL55_RS07385 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS07385 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS07385 IPR010242 Transcription factor HTH, IscR CL55_RS07385 IPR030489 Transcription regulator Rrf2-type, conserved site CL55_RS07385 IPR000944 Transcription regulator Rrf2-type CL55_RS07390 IPR024759 UvrB, YAD/RRR-motif-containing domain CL55_RS07390 IPR041471 UvrB, interaction domain CL55_RS07390 IPR004807 UvrABC system, subunit B CL55_RS07390 IPR036876 UVR domain superfamily CL55_RS07390 IPR001943 UVR domain CL55_RS07390 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07390 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS07390 IPR006935 Helicase/UvrB, N-terminal CL55_RS07390 IPR001650 Helicase, C-terminal CL55_RS07395 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS07395 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS07395 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CL55_RS07395 IPR000796 Aspartate/other aminotransferase CL55_RS07395 IPR004839 Aminotransferase, class I/classII CL55_RS07395 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS07405 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria CL55_RS07405 IPR007202 4Fe-4S domain CL55_RS07405 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS07405 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS07405 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB CL55_RS07410 IPR011257 DNA glycosylase CL55_RS07410 IPR004036 Endonuclease III-like, conserved site-2 CL55_RS07410 IPR004035 Endonuclease III, iron-sulphur binding site CL55_RS07410 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CL55_RS07410 IPR000445 Helix-hairpin-helix motif CL55_RS07410 IPR005759 Endonuclease III CL55_RS07410 IPR003265 HhH-GPD domain CL55_RS07410 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CL55_RS07420 IPR000620 EamA domain CL55_RS07430 IPR006254 Isocitrate lyase CL55_RS07430 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site CL55_RS07430 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CL55_RS07430 IPR040442 Pyruvate kinase-like domain superfamily CL55_RS07430 IPR039556 ICL/PEPM domain CL55_RS07440 IPR041546 ClpA/ClpB, AAA lid domain CL55_RS07440 IPR018368 ClpA/B, conserved site 1 CL55_RS07440 IPR001270 ClpA/B family CL55_RS07440 IPR004176 Clp, N-terminal CL55_RS07440 IPR036628 Clp, N-terminal domain superfamily CL55_RS07440 IPR019489 Clp ATPase, C-terminal CL55_RS07440 IPR017730 Chaperonin ClpB CL55_RS07440 IPR028299 ClpA/B, conserved site 2 CL55_RS07440 IPR003959 ATPase, AAA-type, core CL55_RS07440 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07440 IPR003593 AAA+ ATPase domain CL55_RS07445 IPR035901 GIY-YIG endonuclease superfamily CL55_RS07445 IPR000305 GIY-YIG endonuclease CL55_RS07450 IPR000305 GIY-YIG endonuclease CL55_RS07450 IPR035901 GIY-YIG endonuclease superfamily CL55_RS07490 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS07490 IPR002937 Amine oxidase CL55_RS07490 IPR014105 Carotenoid/retinoid oxidoreductase CL55_RS07495 IPR003448 Molybdopterin biosynthesis MoaE CL55_RS07495 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily CL55_RS07505 IPR038987 Molybdopterin biosynthesis protein MoeA-like CL55_RS07505 IPR036688 MoeA, C-terminal, domain IV superfamily CL55_RS07505 IPR005110 MoeA, N-terminal and linker domain CL55_RS07505 IPR036135 MoeA, N-terminal and linker domain superfamily CL55_RS07505 IPR008284 Molybdenum cofactor biosynthesis, conserved site CL55_RS07505 IPR001453 MoaB/Mog domain CL55_RS07505 IPR036425 MoaB/Mog-like domain superfamily CL55_RS07505 IPR005111 MoeA, C-terminal, domain IV CL55_RS07510 IPR001926 Pyridoxal-phosphate dependent enzyme CL55_RS07510 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CL55_RS07510 IPR004450 Threonine synthase-like CL55_RS07510 IPR037158 Threonine synthase, N-terminal domain superfamily CL55_RS07510 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CL55_RS07510 IPR029144 Threonine synthase, N-terminal CL55_RS07515 IPR001342 Homoserine dehydrogenase, catalytic CL55_RS07515 IPR036291 NAD(P)-binding domain superfamily CL55_RS07515 IPR019811 Homoserine dehydrogenase, conserved site CL55_RS07515 IPR016204 Homoserine dehydrogenase CL55_RS07515 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding CL55_RS07515 IPR002912 ACT domain CL55_RS07520 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS07520 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS07520 IPR004839 Aminotransferase, class I/classII CL55_RS07520 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS07525 IPR036748 MTH938-like superfamily CL55_RS07525 IPR007523 NDUFAF3/Mth938 domain-containing protein CL55_RS07530 IPR003342 Glycosyl transferase family 39/83 CL55_RS07530 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase CL55_RS07535 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CL55_RS07535 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS07535 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS07535 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB CL55_RS07535 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS07540 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS07540 IPR001173 Glycosyltransferase 2-like CL55_RS07540 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase CL55_RS07545 IPR036477 Formyl transferase, N-terminal domain superfamily CL55_RS07545 IPR001509 NAD-dependent epimerase/dehydratase CL55_RS07545 IPR021168 Bifunctional polymyxin resistance protein, ArnA CL55_RS07545 IPR036291 NAD(P)-binding domain superfamily CL55_RS07545 IPR005793 Formyl transferase, C-terminal CL55_RS07545 IPR002376 Formyl transferase, N-terminal CL55_RS07545 IPR011034 Formyl transferase-like, C-terminal domain superfamily CL55_RS07550 IPR001509 NAD-dependent epimerase/dehydratase CL55_RS07550 IPR005793 Formyl transferase, C-terminal CL55_RS07550 IPR036291 NAD(P)-binding domain superfamily CL55_RS07550 IPR011034 Formyl transferase-like, C-terminal domain superfamily CL55_RS07550 IPR036477 Formyl transferase, N-terminal domain superfamily CL55_RS07550 IPR002376 Formyl transferase, N-terminal CL55_RS07550 IPR021168 Bifunctional polymyxin resistance protein, ArnA CL55_RS07555 IPR002509 NodB homology domain CL55_RS07555 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable CL55_RS07555 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CL55_RS07560 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CL55_RS07560 IPR024706 Peroxiredoxin, AhpC-type CL55_RS07560 IPR013766 Thioredoxin domain CL55_RS07560 IPR036249 Thioredoxin-like superfamily CL55_RS07565 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07565 IPR029060 PIN-like domain superfamily CL55_RS07565 IPR002716 PIN domain CL55_RS07565 IPR003714 PhoH-like protein CL55_RS07570 IPR038765 Papain-like cysteine peptidase superfamily CL55_RS07570 IPR000064 Endopeptidase, NLPC/P60 domain CL55_RS07575 IPR003593 AAA+ ATPase domain CL55_RS07575 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CL55_RS07575 IPR007692 DNA helicase, DnaB type CL55_RS07575 IPR007694 DNA helicase, DnaB-like, C-terminal CL55_RS07575 IPR007693 DNA helicase, DnaB-like, N-terminal CL55_RS07575 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07575 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CL55_RS07580 IPR000244 Ribosomal protein L9 CL55_RS07580 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CL55_RS07580 IPR020594 Ribosomal protein L9, bacteria/chloroplast CL55_RS07580 IPR020069 Ribosomal protein L9, C-terminal CL55_RS07580 IPR020070 Ribosomal protein L9, N-terminal CL55_RS07580 IPR036935 Ribosomal protein L9, N-terminal domain superfamily CL55_RS07580 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CL55_RS07585 IPR001648 Ribosomal protein S18 CL55_RS07585 IPR018275 Ribosomal protein S18, conserved site CL55_RS07585 IPR036870 Ribosomal protein S18 superfamily CL55_RS07595 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CL55_RS07595 IPR035980 Ribosomal protein S6 superfamily CL55_RS07595 IPR000529 Ribosomal protein S6 CL55_RS07595 IPR020814 Ribosomal protein S6, plastid/chloroplast CL55_RS07600 IPR027473 L-asparaginase, C-terminal CL55_RS07600 IPR027474 L-asparaginase, N-terminal CL55_RS07600 IPR037152 L-asparaginase, N-terminal domain superfamily CL55_RS07600 IPR020827 Asparaginase/glutaminase, active site 1 CL55_RS07600 IPR006034 Asparaginase/glutaminase-like CL55_RS07600 IPR027475 Asparaginase/glutaminase, active site 2 CL55_RS07600 IPR036152 Asparaginase/glutaminase-like superfamily CL55_RS07600 IPR004550 L-asparaginase, type II CL55_RS07600 IPR040919 Asparaginase/glutaminase, C-terminal CL55_RS07605 IPR015927 Peptidase S24/S26A/S26B/S26C CL55_RS07605 IPR039418 LexA-like CL55_RS07605 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS07605 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS07605 IPR006200 Transcription regulator LexA CL55_RS07605 IPR006197 Peptidase S24, LexA-like CL55_RS07605 IPR036286 LexA/Signal peptidase-like superfamily CL55_RS07605 IPR006199 LexA repressor, DNA-binding domain CL55_RS07625 IPR000462 CDP-alcohol phosphatidyltransferase CL55_RS07625 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CL55_RS07625 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial CL55_RS07630 IPR001943 UVR domain CL55_RS07630 IPR010994 RuvA domain 2-like CL55_RS07630 IPR036876 UVR domain superfamily CL55_RS07630 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CL55_RS07630 IPR035901 GIY-YIG endonuclease superfamily CL55_RS07630 IPR000305 GIY-YIG endonuclease CL55_RS07630 IPR004791 UvrABC system, subunit C CL55_RS07630 IPR001162 UvrC family homology region CL55_RS07630 IPR038476 UvrC homology region 2 superfamily CL55_RS07640 IPR012340 Nucleic acid-binding, OB-fold CL55_RS07640 IPR015365 Elongation factor P, C-terminal CL55_RS07640 IPR008991 Translation protein SH3-like domain superfamily CL55_RS07640 IPR020599 Translation elongation factor P/YeiP CL55_RS07640 IPR013185 Translation elongation factor, KOW-like CL55_RS07640 IPR001059 Translation elongation factor P/YeiP, central CL55_RS07640 IPR013852 Translation elongation factor P/YeiP, conserved site CL55_RS07640 IPR011768 Translation elongation factor P CL55_RS07640 IPR014722 Ribosomal protein L2, domain 2 CL55_RS07645 IPR022956 Beta-hexosaminidase, bacterial CL55_RS07645 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily CL55_RS07645 IPR001764 Glycoside hydrolase, family 3, N-terminal CL55_RS07645 IPR017853 Glycoside hydrolase superfamily CL55_RS07645 IPR019800 Glycoside hydrolase, family 3, active site CL55_RS07650 IPR004568 Phosphopantetheine-protein transferase domain CL55_RS07650 IPR002582 Holo-[acyl carrier protein] synthase CL55_RS07650 IPR037143 4'-phosphopantetheinyl transferase domain superfamily CL55_RS07650 IPR008278 4'-phosphopantetheinyl transferase domain CL55_RS07655 IPR036130 Pyridoxine 5'-phosphate synthase CL55_RS07655 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ CL55_RS07655 IPR013785 Aldolase-type TIM barrel CL55_RS07660 IPR012340 Nucleic acid-binding, OB-fold CL55_RS07660 IPR022572 DNA replication/recombination mediator RecO, N-terminal CL55_RS07660 IPR003717 Recombination protein O, RecO CL55_RS07660 IPR037278 ARFGAP/RecO-like zinc finger CL55_RS07665 IPR030388 Era-type guanine nucleotide-binding (G) domain CL55_RS07665 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07665 IPR006073 GTP binding domain CL55_RS07665 IPR015946 K homology domain-like, alpha/beta CL55_RS07665 IPR005662 GTP-binding protein Era CL55_RS07665 IPR004044 K Homology domain, type 2 CL55_RS07665 IPR005225 Small GTP-binding protein domain CL55_RS07665 IPR009019 K homology domain superfamily, prokaryotic type CL55_RS07670 IPR014720 Double-stranded RNA-binding domain CL55_RS07670 IPR011907 Ribonuclease III CL55_RS07670 IPR000999 Ribonuclease III domain CL55_RS07670 IPR036389 Ribonuclease III, endonuclease domain superfamily CL55_RS07675 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CL55_RS07675 IPR036286 LexA/Signal peptidase-like superfamily CL55_RS07675 IPR000223 Peptidase S26A, signal peptidase I CL55_RS07675 IPR019533 Peptidase S26 CL55_RS07675 IPR019756 Peptidase S26A, signal peptidase I, serine active site CL55_RS07675 IPR019758 Peptidase S26A, signal peptidase I, conserved site CL55_RS07680 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS07680 IPR006297 Elongation factor 4 CL55_RS07680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07680 IPR000795 Transcription factor, GTP-binding domain CL55_RS07680 IPR035647 EF-G domain III/V-like CL55_RS07680 IPR005225 Small GTP-binding protein domain CL55_RS07680 IPR000640 Elongation factor EFG, domain V-like CL55_RS07680 IPR004161 Translation elongation factor EFTu-like, domain 2 CL55_RS07680 IPR035654 Elongation factor 4, domain IV CL55_RS07680 IPR013842 GTP-binding protein LepA, C-terminal CL55_RS07680 IPR038363 LepA, C-terminal domain superfamily CL55_RS07680 IPR031157 Tr-type G domain, conserved site CL55_RS07685 IPR001478 PDZ domain CL55_RS07685 IPR036034 PDZ superfamily CL55_RS07685 IPR009003 Peptidase S1, PA clan CL55_RS07685 IPR001940 Peptidase S1C CL55_RS07685 IPR011782 Peptidase S1C, Do CL55_RS07690 IPR000794 Beta-ketoacyl synthase CL55_RS07690 IPR016039 Thiolase-like CL55_RS07690 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 CL55_RS07690 IPR018201 Beta-ketoacyl synthase, active site CL55_RS07690 IPR014031 Beta-ketoacyl synthase, C-terminal CL55_RS07690 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CL55_RS07690 IPR014030 Beta-ketoacyl synthase, N-terminal CL55_RS07695 IPR003231 Acyl carrier protein (ACP) CL55_RS07695 IPR006162 Phosphopantetheine attachment site CL55_RS07695 IPR036736 ACP-like superfamily CL55_RS07695 IPR009081 Phosphopantetheine binding ACP domain CL55_RS07695 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CL55_RS07700 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS07700 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS07700 IPR036291 NAD(P)-binding domain superfamily CL55_RS07700 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CL55_RS07705 IPR024925 Malonyl CoA-acyl carrier protein transacylase CL55_RS07705 IPR014043 Acyl transferase CL55_RS07705 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type CL55_RS07705 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CL55_RS07705 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CL55_RS07705 IPR001227 Acyl transferase domain superfamily CL55_RS07710 IPR016039 Thiolase-like CL55_RS07710 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CL55_RS07710 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CL55_RS07710 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CL55_RS07715 IPR012281 Phospholipid biosynthesis protein, PlsX-like CL55_RS07715 IPR003664 Fatty acid synthesis PlsX protein CL55_RS07720 IPR002677 Ribosomal protein L32p CL55_RS07720 IPR011332 Zinc-binding ribosomal protein CL55_RS07725 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria CL55_RS07725 IPR003772 Large ribosomal RNA subunit accumulation protein YceD CL55_RS07730 IPR029001 Inosine triphosphate pyrophosphatase-like CL55_RS07730 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein CL55_RS07735 IPR018063 SAM-dependent methyltransferase RsmI, conserved site CL55_RS07735 IPR035996 Tetrapyrrole methylase superfamily CL55_RS07735 IPR000878 Tetrapyrrole methylase CL55_RS07735 IPR014776 Tetrapyrrole methylase, subdomain 2 CL55_RS07735 IPR014777 Tetrapyrrole methylase, subdomain 1 CL55_RS07735 IPR008189 rRNA small subunit methyltransferase I CL55_RS07740 IPR023171 Na/H antiporter domain superfamily CL55_RS07740 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS07740 IPR004670 Na+/H+ antiporter NhaA CL55_RS07740 IPR002142 Peptidase S49 CL55_RS07745 IPR036412 HAD-like superfamily CL55_RS07745 IPR041492 Haloacid dehalogenase-like hydrolase CL55_RS07745 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CL55_RS07745 IPR006439 HAD hydrolase, subfamily IA CL55_RS07745 IPR023214 HAD superfamily CL55_RS07750 IPR006225 Pseudouridine synthase, RluC/RluD CL55_RS07750 IPR036986 RNA-binding S4 domain superfamily CL55_RS07750 IPR002942 RNA-binding S4 domain CL55_RS07750 IPR006145 Pseudouridine synthase, RsuA/RluA CL55_RS07750 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CL55_RS07750 IPR020103 Pseudouridine synthase, catalytic domain superfamily CL55_RS07755 IPR012340 Nucleic acid-binding, OB-fold CL55_RS07755 IPR021968 Polyribonucleotide phosphorylase C-terminal CL55_RS07755 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G CL55_RS07755 IPR028878 Ribonuclease E CL55_RS07755 IPR004659 Ribonuclease E/G CL55_RS07755 IPR022967 RNA-binding domain, S1 CL55_RS07755 IPR003029 S1 domain CL55_RS07760 IPR010505 Molybdenum cofactor synthesis C-terminal CL55_RS07760 IPR013785 Aldolase-type TIM barrel CL55_RS07760 IPR013483 Molybdenum cofactor biosynthesis protein A CL55_RS07760 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site CL55_RS07760 IPR006638 Elp3/MiaB/NifB CL55_RS07760 IPR007197 Radical SAM CL55_RS07765 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS07765 IPR013482 Molybdenum cofactor guanylyltransferase CL55_RS07765 IPR025877 MobA-like NTP transferase CL55_RS07770 IPR005111 MoeA, C-terminal, domain IV CL55_RS07770 IPR005110 MoeA, N-terminal and linker domain CL55_RS07770 IPR036135 MoeA, N-terminal and linker domain superfamily CL55_RS07770 IPR008284 Molybdenum cofactor biosynthesis, conserved site CL55_RS07770 IPR001453 MoaB/Mog domain CL55_RS07770 IPR036425 MoaB/Mog-like domain superfamily CL55_RS07770 IPR036688 MoeA, C-terminal, domain IV superfamily CL55_RS07770 IPR038987 Molybdopterin biosynthesis protein MoeA-like CL55_RS07780 IPR036291 NAD(P)-binding domain superfamily CL55_RS07780 IPR023756 Glyoxylate/hydroxypyruvate reductase B CL55_RS07780 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CL55_RS07780 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL55_RS07780 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CL55_RS07785 IPR026289 Solute binding protein, TakP-like CL55_RS07785 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS07785 IPR018389 TRAP transporter solute receptor DctP/TeaA CL55_RS07785 IPR038404 TRAP transporter solute receptor DctP superfamily CL55_RS07785 IPR041721 Lactate-binding periplasmic protein TTHA0766 CL55_RS07795 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CL55_RS07795 IPR004681 TRAP transporter large membrane protein DctM CL55_RS07810 IPR000813 7Fe ferredoxin CL55_RS07810 IPR022569 Ferredoxin, C-terminal CL55_RS07810 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS07810 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS07815 IPR022890 Ferredoxin--NADP reductase, type 2 CL55_RS07815 IPR023753 FAD/NAD(P)-binding domain CL55_RS07815 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS07820 IPR000398 Thymidylate synthase CL55_RS07820 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily CL55_RS07820 IPR020940 Thymidylate synthase, active site CL55_RS07820 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain CL55_RS07825 IPR012259 Dihydrofolate reductase CL55_RS07825 IPR001796 Dihydrofolate reductase domain CL55_RS07825 IPR017925 Dihydrofolate reductase conserved site CL55_RS07825 IPR024072 Dihydrofolate reductase-like domain superfamily CL55_RS07830 IPR011059 Metal-dependent hydrolase, composite domain superfamily CL55_RS07830 IPR006680 Amidohydrolase-related CL55_RS07830 IPR005920 Imidazolonepropionase CL55_RS07830 IPR032466 Metal-dependent hydrolase CL55_RS07835 IPR038404 TRAP transporter solute receptor DctP superfamily CL55_RS07835 IPR026289 Solute binding protein, TakP-like CL55_RS07835 IPR041722 Alpha-keto acid binding periplasmic protein CL55_RS07835 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS07835 IPR018389 TRAP transporter solute receptor DctP/TeaA CL55_RS07840 IPR036059 Metalloprotease TldD/PmbA superfamily CL55_RS07840 IPR035068 Metalloprotease TldD/PmbA, N-terminal CL55_RS07840 IPR002510 Metalloprotease TldD/PmbA CL55_RS07845 IPR036425 MoaB/Mog-like domain superfamily CL55_RS07845 IPR001453 MoaB/Mog domain CL55_RS07845 IPR008284 Molybdenum cofactor biosynthesis, conserved site CL55_RS07850 IPR013520 Exonuclease, RNase T/DNA polymerase III CL55_RS07850 IPR022894 Oligoribonuclease CL55_RS07850 IPR012337 Ribonuclease H-like superfamily CL55_RS07850 IPR036397 Ribonuclease H superfamily CL55_RS07855 IPR001915 Peptidase M48 CL55_RS07855 IPR032456 CAAX prenyl protease 1, N-terminal CL55_RS07855 IPR027057 CAAX prenyl protease 1 CL55_RS07860 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal CL55_RS07860 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CL55_RS07860 IPR004881 Ribosome biogenesis GTPase RsgA CL55_RS07860 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07860 IPR010914 RsgA GTPase domain CL55_RS07860 IPR012340 Nucleic acid-binding, OB-fold CL55_RS07865 IPR031347 Protein AmpE CL55_RS07865 IPR004485 Cobalamin biosynthesis CobD/CbiB CL55_RS07870 IPR023735 Uncharacterised nudix hydrolase NudL CL55_RS07870 IPR000059 NUDIX hydrolase, NudL, conserved site CL55_RS07870 IPR000086 NUDIX hydrolase domain CL55_RS07870 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS07875 IPR008991 Translation protein SH3-like domain superfamily CL55_RS07875 IPR038657 Ribosomal protein L19 superfamily CL55_RS07875 IPR001857 Ribosomal protein L19 CL55_RS07875 IPR018257 Ribosomal protein L19, conserved site CL55_RS07880 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain CL55_RS07880 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CL55_RS07880 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal CL55_RS07880 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria CL55_RS07880 IPR029028 Alpha/beta knot methyltransferases CL55_RS07885 IPR036976 RimM, N-terminal domain superfamily CL55_RS07885 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS07885 IPR011033 PRC-barrel-like superfamily CL55_RS07885 IPR011961 16S rRNA processing protein RimM CL55_RS07885 IPR002676 RimM, N-terminal CL55_RS07890 IPR000307 Ribosomal protein S16 CL55_RS07890 IPR023803 Ribosomal protein S16 domain superfamily CL55_RS07905 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain CL55_RS07905 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CL55_RS07905 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CL55_RS07905 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CL55_RS07905 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CL55_RS07905 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CL55_RS07905 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CL55_RS07910 IPR029035 DHS-like NAD/FAD-binding domain superfamily CL55_RS07910 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal CL55_RS07910 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site CL55_RS07910 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal CL55_RS07910 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS07910 IPR001308 Electron transfer flavoprotein alpha subunit/FixB CL55_RS07910 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CL55_RS07915 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS07915 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal CL55_RS07915 IPR012255 Electron transfer flavoprotein, beta subunit CL55_RS07915 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CL55_RS07915 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site CL55_RS07920 IPR000873 AMP-dependent synthetase/ligase CL55_RS07920 IPR020845 AMP-binding, conserved site CL55_RS07920 IPR042099 AMP-dependent synthetase-like superfamily CL55_RS07920 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS07925 IPR037138 Histone deacetylase domain superfamily CL55_RS07925 IPR000286 Histone deacetylase family CL55_RS07925 IPR023696 Ureohydrolase domain superfamily CL55_RS07925 IPR023801 Histone deacetylase domain CL55_RS07930 IPR011757 Lytic transglycosylase MltB CL55_RS07930 IPR023346 Lysozyme-like domain superfamily CL55_RS07930 IPR031304 Transglycosylase SLT domain 2 CL55_RS07935 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CL55_RS07935 IPR001926 Pyridoxal-phosphate dependent enzyme CL55_RS07935 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CL55_RS07935 IPR005858 Cysteine synthase CysM CL55_RS07935 IPR005856 Cysteine synthase CL55_RS07960 IPR036291 NAD(P)-binding domain superfamily CL55_RS07960 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase CL55_RS07960 IPR001509 NAD-dependent epimerase/dehydratase CL55_RS07965 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CL55_RS07965 IPR011611 Carbohydrate kinase PfkB CL55_RS07965 IPR011913 RfaE bifunctional protein, domain I CL55_RS07965 IPR029056 Ribokinase-like CL55_RS07970 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CL55_RS07970 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CL55_RS07970 IPR036291 NAD(P)-binding domain superfamily CL55_RS07970 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CL55_RS07970 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS07970 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CL55_RS07970 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CL55_RS07970 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type CL55_RS07975 IPR011990 Tetratricopeptide-like helical domain superfamily CL55_RS07975 IPR013026 Tetratricopeptide repeat-containing domain CL55_RS07975 IPR041166 LapB, rubredoxin metal binding domain CL55_RS07975 IPR030865 Lipopolysaccharide assembly protein B CL55_RS07975 IPR019734 Tetratricopeptide repeat CL55_RS07980 IPR000119 Histone-like DNA-binding protein CL55_RS07980 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CL55_RS07980 IPR005685 Integration host factor, beta subunit CL55_RS07985 IPR003029 S1 domain CL55_RS07985 IPR022967 RNA-binding domain, S1 CL55_RS07985 IPR000110 Ribosomal protein S1 CL55_RS07985 IPR012340 Nucleic acid-binding, OB-fold CL55_RS07990 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS07990 IPR003136 Cytidylate kinase CL55_RS07990 IPR011994 Cytidylate kinase domain CL55_RS07995 IPR001986 Enolpyruvate transferase domain CL55_RS07995 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CL55_RS07995 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site CL55_RS07995 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase CL55_RS07995 IPR036968 Enolpyruvate transferase domain superfamily CL55_RS08000 IPR036291 NAD(P)-binding domain superfamily CL55_RS08000 IPR002912 ACT domain CL55_RS08000 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS08000 IPR003099 Prephenate dehydrogenase CL55_RS08005 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS08005 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CL55_RS08005 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS08005 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS08005 IPR005861 Histidinol-phosphate aminotransferase family CL55_RS08005 IPR004839 Aminotransferase, class I/classII CL55_RS08010 IPR002912 ACT domain CL55_RS08010 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase CL55_RS08010 IPR036263 Chorismate mutase type II superfamily CL55_RS08010 IPR002701 Chorismate mutase II, prokaryotic-type CL55_RS08010 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain CL55_RS08010 IPR001086 Prephenate dehydratase CL55_RS08010 IPR018528 Prephenate dehydratase, conserved site CL55_RS08010 IPR036979 Chorismate mutase domain superfamily CL55_RS08015 IPR000192 Aminotransferase class V domain CL55_RS08015 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CL55_RS08015 IPR022278 Phosphoserine aminotransferase CL55_RS08015 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS08015 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS08015 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS08020 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CL55_RS08020 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CL55_RS08020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CL55_RS08020 IPR005743 DNA gyrase, subunit A CL55_RS08020 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CL55_RS08020 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CL55_RS08020 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CL55_RS08025 IPR006665 OmpA-like domain CL55_RS08025 IPR006664 Outer membrane protein, bacterial CL55_RS08025 IPR006690 Outer membrane protein, OmpA-like, conserved site CL55_RS08025 IPR036737 OmpA-like domain superfamily CL55_RS08030 IPR010233 Ubiquinone biosynthesis O-methyltransferase CL55_RS08030 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS08035 IPR041492 Haloacid dehalogenase-like hydrolase CL55_RS08035 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic CL55_RS08035 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CL55_RS08035 IPR023214 HAD superfamily CL55_RS08035 IPR036412 HAD-like superfamily CL55_RS08035 IPR006439 HAD hydrolase, subfamily IA CL55_RS08040 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site CL55_RS08040 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase CL55_RS08040 IPR037237 IlvD/EDD, N-terminal domain CL55_RS08040 IPR042096 Dihydroxy-acid dehydratase, C-terminal CL55_RS08050 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS08050 IPR004498 Ribosomal protein L11 methyltransferase CL55_RS08060 IPR005064 Bordetella uptake gene CL55_RS08060 IPR042100 Bordetella uptake gene, domain 1 CL55_RS08065 IPR020936 Uncharacterised protein family UPF0176 CL55_RS08065 IPR040503 UPF0176, acylphosphatase-like domain CL55_RS08065 IPR001763 Rhodanese-like domain CL55_RS08065 IPR036873 Rhodanese-like domain superfamily CL55_RS08070 IPR007138 Antibiotic biosynthesis monooxygenase domain CL55_RS08070 IPR011008 Dimeric alpha-beta barrel CL55_RS08075 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CL55_RS08075 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL55_RS08075 IPR036291 NAD(P)-binding domain superfamily CL55_RS08090 IPR042100 Bordetella uptake gene, domain 1 CL55_RS08090 IPR005064 Bordetella uptake gene CL55_RS08095 IPR003691 Putative fluoride ion transporter CrcB CL55_RS08100 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type CL55_RS08100 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B CL55_RS08105 IPR008915 Peptidase M50 CL55_RS08110 IPR015984 Cytochrome c prime, subgroup CL55_RS08110 IPR002321 Cytochrome c, class II CL55_RS08110 IPR010980 Cytochrome c/b562 CL55_RS08110 IPR012127 Cytochrome c prime CL55_RS08120 IPR022694 3-hydroxyacyl-CoA dehydrogenase CL55_RS08120 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site CL55_RS08120 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CL55_RS08120 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CL55_RS08120 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS08120 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS08120 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site CL55_RS08120 IPR036291 NAD(P)-binding domain superfamily CL55_RS08125 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL55_RS08125 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CL55_RS08125 IPR036291 NAD(P)-binding domain superfamily CL55_RS08130 IPR013785 Aldolase-type TIM barrel CL55_RS08130 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA CL55_RS08130 IPR002220 DapA-like CL55_RS08130 IPR020625 Schiff base-forming aldolase, active site CL55_RS08130 IPR020624 Schiff base-forming aldolase, conserved site CL55_RS08135 IPR011852 TRAP transporter solute receptor, TAXI family CL55_RS08145 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CL55_RS08145 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site CL55_RS08145 IPR029017 Enolase-like, N-terminal CL55_RS08145 IPR036849 Enolase-like, C-terminal domain superfamily CL55_RS08145 IPR023444 L-rhamnonate dehydratase CL55_RS08145 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CL55_RS08145 IPR029065 Enolase C-terminal domain-like CL55_RS08150 IPR018392 LysM domain CL55_RS08150 IPR011055 Duplicated hybrid motif CL55_RS08150 IPR016047 Peptidase M23 CL55_RS08150 IPR013731 Opacity-associated protein A, N-terminal CL55_RS08165 IPR036513 STAS domain superfamily CL55_RS08165 IPR002645 STAS domain CL55_RS08165 IPR001902 SLC26A/SulP transporter CL55_RS08165 IPR011547 SLC26A/SulP transporter domain CL55_RS08175 IPR000595 Cyclic nucleotide-binding domain CL55_RS08175 IPR018490 Cyclic nucleotide-binding-like CL55_RS08175 IPR014710 RmlC-like jelly roll fold CL55_RS08175 IPR018335 Transcription regulator HTH, Crp-type, conserved site CL55_RS08175 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS08175 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS08175 IPR012318 Crp-type HTH domain CL55_RS08190 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS08190 IPR013783 Immunoglobulin-like fold CL55_RS08190 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS08190 IPR032879 FixG, C-terminal immunoglobulin-like domain CL55_RS08190 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG CL55_RS08195 IPR009056 Cytochrome c-like domain CL55_RS08195 IPR008168 Cytochrome c, class IC CL55_RS08195 IPR036909 Cytochrome c-like domain superfamily CL55_RS08195 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal CL55_RS08195 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily CL55_RS08195 IPR004678 Cytochrome c oxidase cbb3-type, subunit III CL55_RS08210 IPR023616 Cytochrome c oxidase-like, subunit I domain CL55_RS08210 IPR036927 Cytochrome c oxidase-like, subunit I superfamily CL55_RS08210 IPR000883 Cytochrome c oxidase subunit I CL55_RS08210 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site CL55_RS08210 IPR004677 Cytochrome c oxidase cbb3-type, subunit I CL55_RS08220 IPR023214 HAD superfamily CL55_RS08220 IPR036412 HAD-like superfamily CL55_RS08220 IPR006122 Heavy metal-associated domain, copper ion-binding CL55_RS08220 IPR036163 Heavy metal-associated domain superfamily CL55_RS08220 IPR027256 P-type ATPase, subfamily IB CL55_RS08220 IPR001757 P-type ATPase CL55_RS08220 IPR017969 Heavy-metal-associated, conserved site CL55_RS08220 IPR008250 P-type ATPase, A domain superfamily CL55_RS08220 IPR023298 P-type ATPase, transmembrane domain superfamily CL55_RS08220 IPR023299 P-type ATPase, cytoplasmic domain N CL55_RS08220 IPR018303 P-type ATPase, phosphorylation site CL55_RS08220 IPR006121 Heavy metal-associated domain, HMA CL55_RS08235 IPR011852 TRAP transporter solute receptor, TAXI family CL55_RS08240 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS08240 IPR036291 NAD(P)-binding domain superfamily CL55_RS08240 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS08245 IPR011990 Tetratricopeptide-like helical domain superfamily CL55_RS08245 IPR019734 Tetratricopeptide repeat CL55_RS08245 IPR013026 Tetratricopeptide repeat-containing domain CL55_RS08245 IPR017560 Cytochrome c-type biogenesis protein CcmI CL55_RS08250 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily CL55_RS08250 IPR005616 CcmH/CycL/Ccl2/NrfF family CL55_RS08255 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE CL55_RS08255 IPR013740 Redoxin CL55_RS08255 IPR036249 Thioredoxin-like superfamily CL55_RS08255 IPR017937 Thioredoxin, conserved site CL55_RS08255 IPR013766 Thioredoxin domain CL55_RS08260 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal CL55_RS08260 IPR003567 Cytochrome c-type biogenesis protein CL55_RS08260 IPR003568 Cytochrome c-type biogenesis protein CcmF CL55_RS08260 IPR002541 Cytochrome c assembly protein CL55_RS08265 IPR004329 CcmE/CycJ protein CL55_RS08265 IPR036127 CcmE-like superfamily CL55_RS08275 IPR003557 Cytochrome c-type biogenesis protein CcmC CL55_RS08275 IPR002541 Cytochrome c assembly protein CL55_RS08280 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria CL55_RS08280 IPR003544 Cytochrome c-type biogenesis protein CcmB CL55_RS08285 IPR003439 ABC transporter-like CL55_RS08285 IPR003593 AAA+ ATPase domain CL55_RS08285 IPR017871 ABC transporter, conserved site CL55_RS08285 IPR005895 ABC transporter, haem export, CcmA CL55_RS08285 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08295 IPR020843 Polyketide synthase, enoylreductase domain CL55_RS08295 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site CL55_RS08295 IPR013149 Alcohol dehydrogenase, C-terminal CL55_RS08295 IPR013154 Alcohol dehydrogenase, N-terminal CL55_RS08295 IPR011032 GroES-like superfamily CL55_RS08295 IPR036291 NAD(P)-binding domain superfamily CL55_RS08305 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08305 IPR007357 Deoxyribodipyrimidine photolyase-related protein CL55_RS08305 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily CL55_RS08345 IPR006050 DNA photolyase, N-terminal CL55_RS08345 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08345 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal CL55_RS08345 IPR002081 Cryptochrome/DNA photolyase class 1 CL55_RS08345 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain CL55_RS08345 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily CL55_RS08345 IPR014133 Cryptochrome DASH CL55_RS08345 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily CL55_RS08355 IPR023696 Ureohydrolase domain superfamily CL55_RS08355 IPR037138 Histone deacetylase domain superfamily CL55_RS08355 IPR023801 Histone deacetylase domain CL55_RS08355 IPR000286 Histone deacetylase family CL55_RS08390 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain CL55_RS08390 IPR033940 3-isopropylmalate dehydratase, swivel domain CL55_RS08390 IPR004431 3-isopropylmalate dehydratase, small subunit CL55_RS08390 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CL55_RS08395 IPR033941 3-Isopropylmalate dehydratase, catalytic domain CL55_RS08395 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CL55_RS08395 IPR036008 Aconitase, iron-sulfur domain CL55_RS08395 IPR018136 Aconitase family, 4Fe-4S cluster binding site CL55_RS08395 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CL55_RS08395 IPR004430 3-isopropylmalate dehydratase, large subunit CL55_RS08400 IPR029058 Alpha/Beta hydrolase fold CL55_RS08400 IPR000073 Alpha/beta hydrolase fold-1 CL55_RS08400 IPR000639 Epoxide hydrolase-like CL55_RS08415 IPR029055 Nucleophile aminohydrolases, N-terminal CL55_RS08415 IPR029132 Choloylglycine hydrolase/NAAA C-terminal CL55_RS08420 IPR000415 Nitroreductase-like CL55_RS08420 IPR029479 Nitroreductase CL55_RS08425 IPR023446 Carnitine operon protein CaiE CL55_RS08425 IPR011004 Trimeric LpxA-like superfamily CL55_RS08425 IPR001451 Hexapeptide repeat CL55_RS08430 IPR016161 Aldehyde/histidinol dehydrogenase CL55_RS08430 IPR016162 Aldehyde dehydrogenase, N-terminal CL55_RS08430 IPR016163 Aldehyde dehydrogenase, C-terminal CL55_RS08430 IPR010102 Succinate semialdehyde dehydrogenase CL55_RS08430 IPR016160 Aldehyde dehydrogenase, cysteine active site CL55_RS08430 IPR015590 Aldehyde dehydrogenase domain CL55_RS08430 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CL55_RS08435 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS08435 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CL55_RS08435 IPR036291 NAD(P)-binding domain superfamily CL55_RS08435 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS08440 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CL55_RS08440 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CL55_RS08440 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CL55_RS08440 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CL55_RS08445 IPR001279 Metallo-beta-lactamase CL55_RS08445 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CL55_RS08450 IPR012675 Beta-grasp domain superfamily CL55_RS08450 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CL55_RS08450 IPR002888 [2Fe-2S]-binding CL55_RS08450 IPR036884 [2Fe-2S]-binding domain superfamily CL55_RS08450 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS08450 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS08455 IPR016167 FAD-binding, type PCMH, subdomain 1 CL55_RS08455 IPR016169 FAD-binding, type PCMH, subdomain 2 CL55_RS08455 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily CL55_RS08455 IPR016166 FAD-binding domain, PCMH-type CL55_RS08455 IPR002346 Molybdopterin dehydrogenase, FAD-binding CL55_RS08455 IPR005107 CO dehydrogenase flavoprotein, C-terminal CL55_RS08455 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS08460 IPR014748 Enoyl-CoA hydratase, C-terminal CL55_RS08460 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS08460 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CL55_RS08460 IPR001753 Enoyl-CoA hydratase/isomerase CL55_RS08470 IPR039697 Iron-type alcohol dehydrogenase-like CL55_RS08470 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CL55_RS08470 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CL55_RS08475 IPR042099 AMP-dependent synthetase-like superfamily CL55_RS08475 IPR025110 AMP-binding enzyme, C-terminal domain CL55_RS08475 IPR020845 AMP-binding, conserved site CL55_RS08475 IPR000873 AMP-dependent synthetase/ligase CL55_RS08485 IPR003439 ABC transporter-like CL55_RS08485 IPR003593 AAA+ ATPase domain CL55_RS08485 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CL55_RS08485 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08485 IPR017871 ABC transporter, conserved site CL55_RS08490 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein CL55_RS08490 IPR003593 AAA+ ATPase domain CL55_RS08490 IPR003439 ABC transporter-like CL55_RS08490 IPR017871 ABC transporter, conserved site CL55_RS08490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08505 IPR011991 ArsR-like helix-turn-helix domain CL55_RS08505 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS08505 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS08505 IPR002577 Helix-turn-helix, HxlR type CL55_RS08510 IPR042100 Bordetella uptake gene, domain 1 CL55_RS08510 IPR005064 Bordetella uptake gene CL55_RS08515 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CL55_RS08515 IPR037523 Vicinal oxygen chelate (VOC) domain CL55_RS08515 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CL55_RS08520 IPR013785 Aldolase-type TIM barrel CL55_RS08520 IPR000891 Pyruvate carboxyltransferase CL55_RS08525 IPR003673 CoA-transferase family III CL55_RS08525 IPR023606 CoA-transferase family III domain superfamily CL55_RS08530 IPR005119 LysR, substrate-binding CL55_RS08530 IPR000847 Transcription regulator HTH, LysR CL55_RS08530 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS08530 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS08545 IPR007627 RNA polymerase sigma-70 region 2 CL55_RS08545 IPR007631 RNA polymerase sigma factor 70, non-essential domain CL55_RS08545 IPR007127 RNA polymerase sigma factor 70, region 1.1 CL55_RS08545 IPR009042 RNA polymerase sigma-70 region 1.2 CL55_RS08545 IPR000943 RNA polymerase sigma-70 CL55_RS08545 IPR014284 RNA polymerase sigma-70 like domain CL55_RS08545 IPR042189 Sigma-70 factor, region 1.1 superfamily CL55_RS08545 IPR013325 RNA polymerase sigma factor, region 2 CL55_RS08545 IPR013324 RNA polymerase sigma factor, region 3/4-like CL55_RS08545 IPR012760 RNA polymerase sigma factor RpoD, C-terminal CL55_RS08545 IPR007624 RNA polymerase sigma-70 region 3 CL55_RS08545 IPR007630 RNA polymerase sigma-70 region 4 CL55_RS08545 IPR028630 RNA polymerase sigma factor RpoD CL55_RS08545 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS08550 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CL55_RS08550 IPR013264 DNA primase, catalytic core, N-terminal CL55_RS08550 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CL55_RS08550 IPR019475 DNA primase, DnaB-helicase binding domain CL55_RS08550 IPR006295 DNA primase, DnaG CL55_RS08550 IPR002694 Zinc finger, CHC2-type CL55_RS08550 IPR006171 TOPRIM domain CL55_RS08550 IPR034151 Bacterial DnaG primase, TOPRIM domain CL55_RS08550 IPR030846 DNA primase DnaG, bacteria CL55_RS08550 IPR013173 DNA primase DnaG, DnaB-binding domain CL55_RS08550 IPR036977 DNA Primase, CHC2-type zinc finger CL55_RS08560 IPR038380 Ribosomal protein S21 superfamily CL55_RS08560 IPR018278 Ribosomal protein S21, conserved site CL55_RS08560 IPR001911 Ribosomal protein S21 CL55_RS08565 IPR017861 Kae1/TsaD family CL55_RS08565 IPR017860 Peptidase M22, conserved site CL55_RS08565 IPR000905 Gcp-like domain CL55_RS08565 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD CL55_RS08570 IPR022838 GTP cyclohydrolase FolE2 CL55_RS08570 IPR003801 GTP cyclohydrolase FolE2/MptA CL55_RS08575 IPR005474 Transketolase, N-terminal CL55_RS08575 IPR033248 Transketolase, C-terminal domain CL55_RS08575 IPR020826 Transketolase binding site CL55_RS08575 IPR005475 Transketolase-like, pyrimidine-binding domain CL55_RS08575 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CL55_RS08575 IPR029061 Thiamin diphosphate-binding fold CL55_RS08575 IPR005477 Deoxyxylulose-5-phosphate synthase CL55_RS08580 IPR000092 Polyprenyl synthetase CL55_RS08580 IPR008949 Isoprenoid synthase domain superfamily CL55_RS08580 IPR033749 Polyprenyl synthetase, conserved site CL55_RS08585 IPR037004 Exonuclease VII, small subunit superfamily CL55_RS08585 IPR003761 Exonuclease VII, small subunit CL55_RS08595 IPR036873 Rhodanese-like domain superfamily CL55_RS08595 IPR001763 Rhodanese-like domain CL55_RS08605 IPR029058 Alpha/Beta hydrolase fold CL55_RS08605 IPR002925 Dienelactone hydrolase CL55_RS08610 IPR002421 5'-3' exonuclease, N-terminal CL55_RS08610 IPR020045 DNA polymerase I-like, H3TH domain CL55_RS08610 IPR019760 DNA-directed DNA polymerase, family A, conserved site CL55_RS08610 IPR001098 DNA-directed DNA polymerase, family A, palm domain CL55_RS08610 IPR018320 DNA polymerase 1 CL55_RS08610 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CL55_RS08610 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CL55_RS08610 IPR008918 Helix-hairpin-helix motif, class 2 CL55_RS08610 IPR029060 PIN-like domain superfamily CL55_RS08610 IPR012337 Ribonuclease H-like superfamily CL55_RS08610 IPR002562 3'-5' exonuclease domain CL55_RS08610 IPR002298 DNA polymerase A CL55_RS08610 IPR036397 Ribonuclease H superfamily CL55_RS08620 IPR005280 Homoserine kinase, type II CL55_RS08620 IPR002575 Aminoglycoside phosphotransferase CL55_RS08620 IPR011009 Protein kinase-like domain superfamily CL55_RS08630 IPR014017 UvrD-like DNA helicase, C-terminal CL55_RS08630 IPR013986 DExx box DNA helicase domain superfamily CL55_RS08630 IPR000212 DNA helicase, UvrD/REP type CL55_RS08630 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08630 IPR014016 UvrD-like helicase, ATP-binding domain CL55_RS08630 IPR034739 UvrD/AddA helicase, N-terminal CL55_RS08630 IPR005753 DNA helicase, ATP-dependent, UvrD type CL55_RS08635 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS08635 IPR002300 Aminoacyl-tRNA synthetase, class Ia CL55_RS08635 IPR033705 Valyl tRNA synthetase, anticodon-binding domain CL55_RS08635 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CL55_RS08635 IPR002303 Valine-tRNA ligase CL55_RS08635 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CL55_RS08635 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm CL55_RS08635 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CL55_RS08635 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CL55_RS08635 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CL55_RS08635 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08640 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS08640 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CL55_RS08640 IPR005835 Nucleotidyl transferase domain CL55_RS08645 IPR036868 TusA-like domain superfamily CL55_RS08645 IPR001455 TusA-like domain CL55_RS08650 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CL55_RS08650 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain CL55_RS08650 IPR003156 DHHA1 domain CL55_RS08650 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria CL55_RS08650 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal CL55_RS08650 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS08650 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily CL55_RS08650 IPR002318 Alanine-tRNA ligase, class IIc CL55_RS08650 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CL55_RS08660 IPR002823 Protein of unknown function DUF112, transmembrane CL55_RS08665 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CL55_RS08665 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily CL55_RS08665 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal CL55_RS08665 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily CL55_RS08665 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain CL55_RS08665 IPR022861 Glutamine-tRNA ligase, bacterial CL55_RS08665 IPR004514 Glutamine-tRNA synthetase CL55_RS08665 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS08665 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08675 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CL55_RS08675 IPR012675 Beta-grasp domain superfamily CL55_RS08675 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain CL55_RS08675 IPR017927 FAD-binding domain, ferredoxin reductase-type CL55_RS08675 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CL55_RS08675 IPR001433 Oxidoreductase FAD/NAD(P)-binding CL55_RS08675 IPR017938 Riboflavin synthase-like beta-barrel CL55_RS08675 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CL55_RS08675 IPR036010 2Fe-2S ferredoxin-like superfamily CL55_RS08680 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CL55_RS08680 IPR015424 Pyridoxal phosphate-dependent transferase CL55_RS08680 IPR004636 Acetylornithine/Succinylornithine transaminase family CL55_RS08680 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CL55_RS08680 IPR005814 Aminotransferase class-III CL55_RS08685 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CL55_RS08690 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CL55_RS08695 IPR037518 MPN domain CL55_RS08695 IPR025657 RadC-like JAB domain CL55_RS08695 IPR020891 Uncharacterised protein family UPF0758, conserved site CL55_RS08695 IPR001405 Uncharacterised protein family UPF0758 CL55_RS08695 IPR010994 RuvA domain 2-like CL55_RS08700 IPR034704 L28p-like CL55_RS08700 IPR001383 Ribosomal protein L28 CL55_RS08700 IPR037147 Ribosomal protein L28/L24 superfamily CL55_RS08700 IPR026569 Ribosomal protein L28/L24 CL55_RS08705 IPR001705 Ribosomal protein L33 CL55_RS08705 IPR038584 Ribosomal protein L33 superfamily CL55_RS08705 IPR018264 Ribosomal protein L33, conserved site CL55_RS08705 IPR011332 Zinc-binding ribosomal protein CL55_RS08715 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site CL55_RS08715 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type CL55_RS08715 IPR035926 NusB-like superfamily CL55_RS08715 IPR006027 NusB/RsmB/TIM44 CL55_RS08715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS08715 IPR004573 rRNA small subunit methyltransferase B CL55_RS08715 IPR023267 RNA (C5-cytosine) methyltransferase CL55_RS08720 IPR002376 Formyl transferase, N-terminal CL55_RS08720 IPR036477 Formyl transferase, N-terminal domain superfamily CL55_RS08720 IPR004607 Phosphoribosylglycinamide formyltransferase CL55_RS08720 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CL55_RS08725 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08725 IPR023465 Riboflavin kinase domain superfamily CL55_RS08725 IPR015864 FAD synthetase CL55_RS08725 IPR023468 Riboflavin kinase CL55_RS08725 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic CL55_RS08725 IPR002606 Riboflavin kinase, bacterial CL55_RS08730 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08730 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CL55_RS08730 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CL55_RS08730 IPR023585 Isoleucine-tRNA ligase, type 1 CL55_RS08730 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain CL55_RS08730 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CL55_RS08730 IPR002300 Aminoacyl-tRNA synthetase, class Ia CL55_RS08730 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS08730 IPR002301 Isoleucine-tRNA ligase CL55_RS08730 IPR010663 Zinc finger, FPG/IleRS-type CL55_RS08735 IPR001872 Peptidase A8, signal peptidase II CL55_RS08740 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal CL55_RS08740 IPR035929 CoaB-like superfamily CL55_RS08740 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC CL55_RS08740 IPR003382 Flavoprotein CL55_RS08740 IPR036551 Flavin prenyltransferase-like CL55_RS08745 IPR029054 dUTPase-like CL55_RS08745 IPR033704 dUTPase, trimeric CL55_RS08745 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase CL55_RS08745 IPR036157 dUTPase-like superfamily CL55_RS08750 IPR036628 Clp, N-terminal domain superfamily CL55_RS08750 IPR003593 AAA+ ATPase domain CL55_RS08750 IPR003959 ATPase, AAA-type, core CL55_RS08750 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08750 IPR019489 Clp ATPase, C-terminal CL55_RS08750 IPR004176 Clp, N-terminal CL55_RS08750 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA CL55_RS08750 IPR001270 ClpA/B family CL55_RS08750 IPR018368 ClpA/B, conserved site 1 CL55_RS08750 IPR028299 ClpA/B, conserved site 2 CL55_RS08750 IPR041546 ClpA/ClpB, AAA lid domain CL55_RS08755 IPR022935 ATP-dependent Clp protease adaptor protein ClpS CL55_RS08755 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CL55_RS08755 IPR003769 Adaptor protein ClpS, core CL55_RS08760 IPR012156 Cold shock, CspA CL55_RS08760 IPR019844 Cold-shock (CSD) domain CL55_RS08760 IPR011129 Cold shock domain CL55_RS08760 IPR012340 Nucleic acid-binding, OB-fold CL55_RS08760 IPR002059 Cold-shock protein, DNA-binding CL55_RS08770 IPR009664 Pyrimidine/purine nucleoside phosphorylase CL55_RS08770 IPR014710 RmlC-like jelly roll fold CL55_RS08770 IPR011051 RmlC-like cupin domain superfamily CL55_RS08775 IPR001518 Argininosuccinate synthase CL55_RS08775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08775 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body CL55_RS08775 IPR023434 Argininosuccinate synthase, type 1 subfamily CL55_RS08775 IPR018223 Argininosuccinate synthase, conserved site CL55_RS08780 IPR024904 Ornithine carbamoyltransferase CL55_RS08780 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CL55_RS08780 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CL55_RS08780 IPR006130 Aspartate/ornithine carbamoyltransferase CL55_RS08780 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CL55_RS08780 IPR002292 Ornithine/putrescine carbamoyltransferase CL55_RS08790 IPR002583 Ribosomal protein S20 CL55_RS08790 IPR036510 Ribosomal protein S20 superfamily CL55_RS08795 IPR004268 Peptidoglycan biosynthesis protein MurJ CL55_RS08800 IPR013026 Tetratricopeptide repeat-containing domain CL55_RS08800 IPR011990 Tetratricopeptide-like helical domain superfamily CL55_RS08800 IPR032698 Protein SirB1, N-terminal CL55_RS08800 IPR019734 Tetratricopeptide repeat CL55_RS08805 IPR018022 IPP transferase CL55_RS08805 IPR039657 Dimethylallyltransferase CL55_RS08805 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08810 IPR036921 PurM-like, N-terminal domain superfamily CL55_RS08810 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase CL55_RS08810 IPR016188 PurM-like, N-terminal domain CL55_RS08810 IPR036676 PurM-like, C-terminal domain superfamily CL55_RS08810 IPR010918 PurM-like, C-terminal domain CL55_RS08815 IPR002549 Transmembrane protein TqsA-like CL55_RS08820 IPR013159 Chromosomal replication initiator, DnaA C-terminal CL55_RS08820 IPR010921 Trp repressor/replication initiator CL55_RS08820 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08820 IPR013317 Chromosomal replication initiator protein DnaA CL55_RS08820 IPR018312 Chromosomal replication control, initiator DnaA, conserved site CL55_RS08820 IPR020591 Chromosomal replication control, initiator DnaA-like CL55_RS08820 IPR001957 Chromosomal replication control, initiator DnaA CL55_RS08820 IPR003593 AAA+ ATPase domain CL55_RS08830 IPR010206 Poly(A) polymerase I CL55_RS08830 IPR025866 Polymerase A arginine-rich C-terminal domain CL55_RS08830 IPR002646 Poly A polymerase, head domain CL55_RS08830 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CL55_RS08835 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK CL55_RS08835 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily CL55_RS08840 IPR003700 Ketopantoate hydroxymethyltransferase CL55_RS08840 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CL55_RS08840 IPR040442 Pyruvate kinase-like domain superfamily CL55_RS08845 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CL55_RS08845 IPR018253 DnaJ domain, conserved site CL55_RS08845 IPR036869 Chaperone J-domain superfamily CL55_RS08845 IPR012724 Chaperone DnaJ CL55_RS08845 IPR002939 Chaperone DnaJ, C-terminal CL55_RS08845 IPR001623 DnaJ domain CL55_RS08845 IPR001305 Heat shock protein DnaJ, cysteine-rich domain CL55_RS08845 IPR008971 HSP40/DnaJ peptide-binding CL55_RS08850 IPR013126 Heat shock protein 70 family CL55_RS08850 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily CL55_RS08850 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily CL55_RS08850 IPR018181 Heat shock protein 70, conserved site CL55_RS08850 IPR012725 Chaperone DnaK CL55_RS08855 IPR000740 GrpE nucleotide exchange factor CL55_RS08855 IPR013805 GrpE nucleotide exchange factor, coiled-coil CL55_RS08855 IPR009012 GrpE nucleotide exchange factor, head CL55_RS08860 IPR019772 Ferrochelatase, active site CL55_RS08860 IPR001015 Ferrochelatase CL55_RS08860 IPR033659 Ferrochelatase, N-terminal CL55_RS08860 IPR033644 Ferrochelatase, C-terminal CL55_RS08865 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS08865 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal CL55_RS08865 IPR002571 Heat-inducible transcription repressor HrcA CL55_RS08865 IPR029016 GAF-like domain superfamily CL55_RS08865 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain CL55_RS08865 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS08865 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily CL55_RS08870 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CL55_RS08870 IPR002504 NAD kinase CL55_RS08870 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal CL55_RS08870 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CL55_RS08875 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08875 IPR003395 RecF/RecN/SMC, N-terminal CL55_RS08875 IPR004604 DNA recombination/repair protein RecN CL55_RS08880 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase CL55_RS08880 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain CL55_RS08880 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme CL55_RS08890 IPR001110 Uncharacterised protein family UPF0012, conserved site CL55_RS08890 IPR003010 Carbon-nitrogen hydrolase CL55_RS08890 IPR036526 Carbon-nitrogen hydrolase superfamily CL55_RS08895 IPR036059 Metalloprotease TldD/PmbA superfamily CL55_RS08895 IPR025502 TldD CL55_RS08895 IPR002510 Metalloprotease TldD/PmbA CL55_RS08895 IPR035068 Metalloprotease TldD/PmbA, N-terminal CL55_RS08900 IPR006219 DHAP synthase, class 1 CL55_RS08900 IPR006218 DAHP synthetase I/KDSA CL55_RS08900 IPR013785 Aldolase-type TIM barrel CL55_RS08905 IPR016030 Cobalamin adenosyltransferase-like CL55_RS08905 IPR036451 Cobalamin adenosyltransferase-like superfamily CL55_RS08905 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type CL55_RS08910 IPR004490 Glycolate oxidase subunit GlcD CL55_RS08910 IPR006094 FAD linked oxidase, N-terminal CL55_RS08910 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CL55_RS08910 IPR016166 FAD-binding domain, PCMH-type CL55_RS08910 IPR004113 FAD-linked oxidase, C-terminal CL55_RS08910 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS08910 IPR016164 FAD-linked oxidase-like, C-terminal CL55_RS08915 IPR016164 FAD-linked oxidase-like, C-terminal CL55_RS08915 IPR016166 FAD-binding domain, PCMH-type CL55_RS08915 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS08915 IPR016169 FAD-binding, type PCMH, subdomain 2 CL55_RS08915 IPR006094 FAD linked oxidase, N-terminal CL55_RS08920 IPR004017 Cysteine-rich domain CL55_RS08920 IPR012257 Glycolate oxidase, iron-sulphur subunit CL55_RS08920 IPR009051 Alpha-helical ferredoxin CL55_RS08920 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS08920 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS08925 IPR011078 Pyridoxal phosphate homeostasis protein CL55_RS08925 IPR001608 Alanine racemase, N-terminal CL55_RS08925 IPR029066 PLP-binding barrel CL55_RS08930 IPR036291 NAD(P)-binding domain superfamily CL55_RS08930 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CL55_RS08930 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CL55_RS08930 IPR000304 Pyrroline-5-carboxylate reductase CL55_RS08930 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS08935 IPR006370 4-hydroxybenzoate polyprenyltransferase-like CL55_RS08935 IPR039653 Prenyltransferase CL55_RS08935 IPR000537 UbiA prenyltransferase family CL55_RS08935 IPR030470 UbiA prenyltransferase conserved site CL55_RS08940 IPR014001 Helicase superfamily 1/2, ATP-binding domain CL55_RS08940 IPR033454 RecG, wedge domain CL55_RS08940 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS08940 IPR012340 Nucleic acid-binding, OB-fold CL55_RS08940 IPR001650 Helicase, C-terminal CL55_RS08940 IPR011545 DEAD/DEAH box helicase domain CL55_RS08940 IPR004609 ATP-dependent DNA helicase RecG CL55_RS08945 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily CL55_RS08945 IPR042119 QueA, domain 2 CL55_RS08945 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA CL55_RS08945 IPR042118 QueA, domain 1 CL55_RS08950 IPR002616 tRNA-guanine(15) transglycosylase-like CL55_RS08950 IPR004803 tRNA-guanine transglycosylase CL55_RS08950 IPR036511 Queuine tRNA-ribosyltransferase-like CL55_RS08955 IPR003849 Preprotein translocase YajC CL55_RS08960 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CL55_RS08960 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CL55_RS08960 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CL55_RS08960 IPR027398 SecD export protein N-terminal TM domain CL55_RS08960 IPR005791 Protein translocase subunit SecD CL55_RS08960 IPR001036 Acriflavin resistance protein CL55_RS08965 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CL55_RS08965 IPR005665 Protein-export membrane protein SecF, bacterial CL55_RS08965 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CL55_RS08965 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CL55_RS08970 IPR001296 Glycosyl transferase, family 1 CL55_RS08970 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal CL55_RS08970 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily CL55_RS08970 IPR039901 3-deoxy-D-manno-octulosonic acid transferase CL55_RS08975 IPR013539 Adenylosuccinate lyase PurB, C-terminal CL55_RS08975 IPR004769 Adenylosuccinate lyase CL55_RS08975 IPR008948 L-Aspartase-like CL55_RS08975 IPR022761 Fumarate lyase, N-terminal CL55_RS08975 IPR000362 Fumarate lyase family CL55_RS08975 IPR024083 Fumarase/histidase, N-terminal CL55_RS08975 IPR020557 Fumarate lyase, conserved site CL55_RS08980 IPR036249 Thioredoxin-like superfamily CL55_RS08980 IPR034343 Uncharacterized GST-like protein YibF CL55_RS08980 IPR010987 Glutathione S-transferase, C-terminal-like CL55_RS08980 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CL55_RS08980 IPR004046 Glutathione S-transferase, C-terminal CL55_RS08980 IPR004045 Glutathione S-transferase, N-terminal CL55_RS08985 IPR023382 Adenine nucleotide alpha hydrolase-like domains CL55_RS08985 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS08985 IPR004506 tRNA-specific 2-thiouridylase CL55_RS08990 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 CL55_RS08990 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 CL55_RS08990 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CL55_RS08990 IPR036291 NAD(P)-binding domain superfamily CL55_RS08990 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CL55_RS08995 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal CL55_RS09000 IPR012136 NADP transhydrogenase, beta subunit CL55_RS09000 IPR034300 NADP transhydrogenase beta-like domain CL55_RS09000 IPR029035 DHS-like NAD/FAD-binding domain superfamily CL55_RS09020 IPR002423 Chaperonin Cpn60/TCP-1 family CL55_RS09020 IPR001844 Chaperonin Cpn60 CL55_RS09020 IPR018370 Chaperonin Cpn60, conserved site CL55_RS09020 IPR027409 GroEL-like apical domain superfamily CL55_RS09020 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CL55_RS09020 IPR027413 GroEL-like equatorial domain superfamily CL55_RS09025 IPR011032 GroES-like superfamily CL55_RS09025 IPR020818 GroES chaperonin family CL55_RS09025 IPR037124 GroES chaperonin superfamily CL55_RS09025 IPR018369 Chaperonin GroES, conserved site CL55_RS09035 IPR011006 CheY-like superfamily CL55_RS09035 IPR001789 Signal transduction response regulator, receiver domain CL55_RS09035 IPR000792 Transcription regulator LuxR, C-terminal CL55_RS09040 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS09040 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS09040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS09040 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain CL55_RS09040 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CL55_RS09040 IPR001789 Signal transduction response regulator, receiver domain CL55_RS09040 IPR005467 Histidine kinase domain CL55_RS09040 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS09040 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS09040 IPR036641 HPT domain superfamily CL55_RS09040 IPR011006 CheY-like superfamily CL55_RS09045 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C CL55_RS09045 IPR012338 Beta-lactamase/transpeptidase-like CL55_RS09050 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CL55_RS09050 IPR006070 YrdC-like domain CL55_RS09050 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily CL55_RS09050 IPR005145 Putative GTP-binding controlling metal-binding domain CL55_RS09050 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CL55_RS09055 IPR011761 ATP-grasp fold CL55_RS09055 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CL55_RS09055 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS09055 IPR016185 Pre-ATP-grasp domain superfamily CL55_RS09055 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit CL55_RS09055 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain CL55_RS09055 IPR011054 Rudiment single hybrid motif CL55_RS09060 IPR035893 PurE domain superfamily CL55_RS09060 IPR033747 Class I PurE CL55_RS09060 IPR000031 PurE domain CL55_RS09060 IPR024694 PurE, prokaryotic type CL55_RS09065 IPR018236 SAICAR synthetase, conserved site CL55_RS09065 IPR028923 SAICAR synthetase/ADE2, N-terminal CL55_RS09065 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase CL55_RS09070 IPR000771 Fructose-bisphosphate aldolase, class-II CL55_RS09070 IPR013785 Aldolase-type TIM barrel CL55_RS09070 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype CL55_RS09075 IPR001697 Pyruvate kinase CL55_RS09075 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CL55_RS09075 IPR040442 Pyruvate kinase-like domain superfamily CL55_RS09075 IPR011037 Pyruvate kinase-like, insert domain superfamily CL55_RS09075 IPR018209 Pyruvate kinase, active site CL55_RS09075 IPR015793 Pyruvate kinase, barrel CL55_RS09075 IPR015806 Pyruvate kinase, insert domain superfamily CL55_RS09075 IPR036918 Pyruvate kinase, C-terminal domain superfamily CL55_RS09075 IPR015795 Pyruvate kinase, C-terminal CL55_RS09080 IPR001576 Phosphoglycerate kinase CL55_RS09080 IPR015911 Phosphoglycerate kinase, conserved site CL55_RS09080 IPR015824 Phosphoglycerate kinase, N-terminal CL55_RS09080 IPR036043 Phosphoglycerate kinase superfamily CL55_RS09085 IPR033939 Branched-chain aminotransferase CL55_RS09085 IPR005785 Branched-chain amino acid aminotransferase I CL55_RS09085 IPR036038 Aminotransferase-like, PLP-dependent enzymes CL55_RS09085 IPR001544 Aminotransferase class IV CL55_RS09085 IPR018300 Aminotransferase, class IV, conserved site CL55_RS09095 IPR011910 ADP-heptose--LPS heptosyltransferase 2 CL55_RS09095 IPR002201 Glycosyl transferase, family 9 CL55_RS09115 IPR023045 Molybdenum cofactor biosynthesis C CL55_RS09115 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain CL55_RS09115 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily CL55_RS09120 IPR012902 Prokaryotic N-terminal methylation site CL55_RS09120 IPR001082 Fimbrial protein pilin CL55_RS09125 IPR005496 Integral membrane protein TerC CL55_RS09125 IPR022301 Integral membrane protein YjbE CL55_RS09130 IPR036291 NAD(P)-binding domain superfamily CL55_RS09130 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CL55_RS09130 IPR003781 CoA-binding CL55_RS09130 IPR016102 Succinyl-CoA synthetase-like CL55_RS09130 IPR005810 Succinyl-CoA ligase, alpha subunit CL55_RS09130 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CL55_RS09130 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site CL55_RS09135 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site CL55_RS09135 IPR005809 Succinate--CoA synthetase, beta subunit CL55_RS09135 IPR016102 Succinyl-CoA synthetase-like CL55_RS09135 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS09135 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CL55_RS09135 IPR011761 ATP-grasp fold CL55_RS09135 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type CL55_RS09140 IPR003783 Regulatory protein RecX CL55_RS09140 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS09145 IPR003593 AAA+ ATPase domain CL55_RS09145 IPR013765 DNA recombination and repair protein RecA CL55_RS09145 IPR020584 DNA recombination/repair protein RecA, conserved site CL55_RS09145 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS09145 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CL55_RS09145 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface CL55_RS09145 IPR023400 DNA recombination and repair protein RecA, C-terminal CL55_RS09160 IPR001734 Sodium/solute symporter CL55_RS09160 IPR038377 Sodium/glucose symporter superfamily CL55_RS09160 IPR019899 Sodium/solute symporter, VC2705 subfamily CL55_RS09180 IPR003141 Polymerase/histidinol phosphatase, N-terminal CL55_RS09180 IPR040982 DNA polymerase III alpha subunit finger domain CL55_RS09180 IPR036397 Ribonuclease H superfamily CL55_RS09180 IPR012337 Ribonuclease H-like superfamily CL55_RS09180 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type CL55_RS09180 IPR004013 PHP domain CL55_RS09180 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CL55_RS09180 IPR012340 Nucleic acid-binding, OB-fold CL55_RS09180 IPR013520 Exonuclease, RNase T/DNA polymerase III CL55_RS09180 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CL55_RS09180 IPR029460 DNA polymerase, helix-hairpin-helix motif CL55_RS09180 IPR024754 DNA polymerase III polC-like, N-terminal domain II CL55_RS09180 IPR028112 DNA polymerase III polC-type, N-terminal domain I CL55_RS09185 IPR000644 CBS domain CL55_RS09195 IPR032818 DedA family CL55_RS09195 IPR032816 SNARE associated Golgi protein CL55_RS09205 IPR005163 3-alpha domain CL55_RS09205 IPR011037 Pyruvate kinase-like, insert domain superfamily CL55_RS09205 IPR005302 Molybdenum cofactor sulfurase, C-terminal CL55_RS09210 IPR005829 Sugar transporter, conserved site CL55_RS09210 IPR011701 Major facilitator superfamily CL55_RS09210 IPR020846 Major facilitator superfamily domain CL55_RS09210 IPR036259 MFS transporter superfamily CL55_RS09210 IPR004736 MFS transporter, metabolite:H symporter CL55_RS09210 IPR005829 Sugar transporter, conserved site CL55_RS09210 IPR004736 MFS transporter, metabolite:H symporter CL55_RS09210 IPR036259 MFS transporter superfamily CL55_RS09210 IPR011701 Major facilitator superfamily CL55_RS09210 IPR020846 Major facilitator superfamily domain CL55_RS09215 IPR038404 TRAP transporter solute receptor DctP superfamily CL55_RS09215 IPR018389 TRAP transporter solute receptor DctP/TeaA CL55_RS09215 IPR006311 Twin-arginine translocation pathway, signal sequence CL55_RS09215 IPR041722 Alpha-keto acid binding periplasmic protein CL55_RS09215 IPR026289 Solute binding protein, TakP-like CL55_RS09225 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CL55_RS09225 IPR004681 TRAP transporter large membrane protein DctM CL55_RS09230 IPR029055 Nucleophile aminohydrolases, N-terminal CL55_RS09235 IPR005115 Uncharacterised domain UPF0126 CL55_RS09240 IPR004045 Glutathione S-transferase, N-terminal CL55_RS09240 IPR040079 Glutathione Transferase family CL55_RS09240 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CL55_RS09240 IPR010987 Glutathione S-transferase, C-terminal-like CL55_RS09240 IPR034330 Glutathione S-transferases, class Zeta , C-terminal CL55_RS09240 IPR004046 Glutathione S-transferase, C-terminal CL55_RS09240 IPR005955 Glutathione S-transferases, class Zeta CL55_RS09240 IPR036249 Thioredoxin-like superfamily CL55_RS09240 IPR034333 Glutathione S-transferases, class Zeta , N-terminal CL55_RS09245 IPR036291 NAD(P)-binding domain superfamily CL55_RS09245 IPR013332 Ketopantoate reductase, N-terminal domain CL55_RS09245 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS09245 IPR003710 Ketopantoate reductase ApbA/PanE CL55_RS09245 IPR013752 Ketopantoate reductase, C-terminal domain CL55_RS09245 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS09250 IPR017941 Rieske [2Fe-2S] iron-sulphur domain CL55_RS09250 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site CL55_RS09250 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily CL55_RS09255 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CL55_RS09255 IPR001303 Class II aldolase/adducin N-terminal CL55_RS09260 IPR000847 Transcription regulator HTH, LysR CL55_RS09260 IPR005119 LysR, substrate-binding CL55_RS09260 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS09260 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS09275 IPR001451 Hexapeptide repeat CL55_RS09275 IPR011004 Trimeric LpxA-like superfamily CL55_RS09280 IPR029020 Ammonium/urea transporter CL55_RS09280 IPR001905 Ammonium transporter CL55_RS09280 IPR018047 Ammonium transporter, conserved site CL55_RS09280 IPR024041 Ammonium transporter AmtB-like domain CL55_RS09295 IPR020575 Heat shock protein Hsp90, N-terminal CL55_RS09295 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS09295 IPR037196 HSP90, C-terminal domain CL55_RS09295 IPR019805 Heat shock protein Hsp90, conserved site CL55_RS09295 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS09295 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS09295 IPR001404 Heat shock protein Hsp90 family CL55_RS09310 IPR002792 TRAM domain CL55_RS09310 IPR020612 Methylthiotransferase, conserved site CL55_RS09310 IPR007197 Radical SAM CL55_RS09310 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB CL55_RS09310 IPR038135 Methylthiotransferase, N-terminal domain superfamily CL55_RS09310 IPR005839 Methylthiotransferase CL55_RS09310 IPR006638 Elp3/MiaB/NifB CL55_RS09310 IPR023404 Radical SAM, alpha/beta horseshoe CL55_RS09310 IPR013848 Methylthiotransferase, N-terminal CL55_RS09315 IPR020549 Endoribonuclease YbeY, conserved site CL55_RS09315 IPR002036 Endoribonuclease YbeY CL55_RS09315 IPR023091 Metalloprotease catalytic domain superfamily, predicted CL55_RS09320 IPR005170 Transporter-associated domain CL55_RS09320 IPR000644 CBS domain CL55_RS09320 IPR036318 FAD-binding, type PCMH-like superfamily CL55_RS09320 IPR016169 FAD-binding, type PCMH, subdomain 2 CL55_RS09325 IPR036526 Carbon-nitrogen hydrolase superfamily CL55_RS09325 IPR004563 Apolipoprotein N-acyltransferase CL55_RS09325 IPR003010 Carbon-nitrogen hydrolase CL55_RS09330 IPR002310 Glycine-tRNA ligase, alpha subunit CL55_RS09330 IPR006194 Glycine-tRNA synthetase, heterodimeric CL55_RS09335 IPR006194 Glycine-tRNA synthetase, heterodimeric CL55_RS09335 IPR008909 DALR anticodon binding CL55_RS09335 IPR015944 Glycine-tRNA ligase, beta subunit CL55_RS09340 IPR006543 Histidinol-phosphate phosphatase CL55_RS09340 IPR023214 HAD superfamily CL55_RS09340 IPR006549 HAD-superfamily hydrolase,subfamily IIIA CL55_RS09340 IPR036412 HAD-like superfamily CL55_RS09340 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase CL55_RS09345 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase CL55_RS09345 IPR002123 Phospholipid/glycerol acyltransferase CL55_RS09350 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS09350 IPR011530 Ribosomal RNA adenine dimethylase CL55_RS09350 IPR023165 rRNA adenine dimethylase-like CL55_RS09350 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal CL55_RS09350 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CL55_RS09355 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase CL55_RS09355 IPR005255 PdxA family CL55_RS09360 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CL55_RS09360 IPR027304 Trigger factor/SurA domain superfamily CL55_RS09360 IPR015391 SurA N-terminal CL55_RS09360 IPR023034 Peptidyl-prolyl isomerase SurA CL55_RS09360 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site CL55_RS09365 IPR005653 Organic solvent tolerance-like, N-terminal CL55_RS09365 IPR007543 LptD, C-terminal CL55_RS09365 IPR020889 LPS-assembly protein LptD CL55_RS09370 IPR002575 Aminoglycoside phosphotransferase CL55_RS09370 IPR011009 Protein kinase-like domain superfamily CL55_RS09375 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS09375 IPR005835 Nucleotidyl transferase domain CL55_RS09380 IPR036005 Creatinase/aminopeptidase-like CL55_RS09380 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CL55_RS09380 IPR000994 Peptidase M24 CL55_RS09380 IPR001714 Peptidase M24, methionine aminopeptidase CL55_RS09380 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CL55_RS09380 IPR007865 Aminopeptidase P, N-terminal CL55_RS09385 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS09385 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase CL55_RS09385 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site CL55_RS09385 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 CL55_RS09385 IPR002938 FAD-binding domain CL55_RS09390 IPR035587 DUS-like, FMN-binding domain CL55_RS09390 IPR001269 tRNA-dihydrouridine synthase CL55_RS09390 IPR032887 tRNA-dihydrouridine synthase B CL55_RS09390 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal CL55_RS09390 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 CL55_RS09390 IPR013785 Aldolase-type TIM barrel CL55_RS09390 IPR018517 tRNA-dihydrouridine synthase, conserved site CL55_RS09395 IPR005412 DNA-binding protein Fis CL55_RS09395 IPR009057 Homeobox-like domain superfamily CL55_RS09395 IPR002197 DNA binding HTH domain, Fis-type CL55_RS09400 IPR036914 Methylglyoxal synthase-like domain superfamily CL55_RS09400 IPR002695 Bifunctional purine biosynthesis protein PurH-like CL55_RS09400 IPR011607 Methylglyoxal synthase-like domain CL55_RS09400 IPR024051 AICAR transformylase, duplicated domain superfamily CL55_RS09400 IPR016193 Cytidine deaminase-like CL55_RS09405 IPR012337 Ribonuclease H-like superfamily CL55_RS09405 IPR036397 Ribonuclease H superfamily CL55_RS09405 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site CL55_RS09405 IPR002176 Crossover junction endodeoxyribonuclease RuvC CL55_RS09410 IPR036267 RuvA, C-terminal domain superfamily CL55_RS09410 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial CL55_RS09410 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CL55_RS09410 IPR012340 Nucleic acid-binding, OB-fold CL55_RS09410 IPR000085 Bacterial DNA recombination protein RuvA CL55_RS09410 IPR010994 RuvA domain 2-like CL55_RS09410 IPR011114 Holliday junction DNA helicase RuvA, C-terminal CL55_RS09415 IPR008823 RuvB C-terminal winged helix domain CL55_RS09415 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS09415 IPR008824 RuvB-like P-loop domain CL55_RS09415 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS09415 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS09415 IPR003593 AAA+ ATPase domain CL55_RS09415 IPR004605 DNA helicase, Holliday junction RuvB-type CL55_RS09415 IPR041445 RuvB, AAA lid domain CL55_RS09420 IPR024088 Tyrosine-tRNA ligase, bacterial-type CL55_RS09420 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 CL55_RS09420 IPR002307 Tyrosine-tRNA ligase CL55_RS09420 IPR002305 Aminoacyl-tRNA synthetase, class Ic CL55_RS09420 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS09420 IPR002942 RNA-binding S4 domain CL55_RS09420 IPR036986 RNA-binding S4 domain superfamily CL55_RS09420 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS09425 IPR005338 Anhydro-N-acetylmuramic acid kinase CL55_RS09430 IPR017870 FeS cluster insertion, C-terminal, conserved site CL55_RS09430 IPR035903 HesB-like domain superfamily CL55_RS09430 IPR023063 FeS cluster insertion protein ErpA CL55_RS09430 IPR000361 FeS cluster biogenesis CL55_RS09430 IPR016092 FeS cluster insertion protein CL55_RS09435 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 CL55_RS09435 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site CL55_RS09435 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CL55_RS09435 IPR000534 Semialdehyde dehydrogenase, NAD-binding CL55_RS09435 IPR036291 NAD(P)-binding domain superfamily CL55_RS09440 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS09440 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS09440 IPR020574 Ribosomal protein S9, conserved site CL55_RS09440 IPR023035 Ribosomal protein S9, bacterial/plastid CL55_RS09440 IPR000754 Ribosomal protein S9 CL55_RS09445 IPR036899 Ribosomal protein L13 superfamily CL55_RS09445 IPR005823 Ribosomal protein L13, bacterial-type CL55_RS09445 IPR005822 Ribosomal protein L13 CL55_RS09450 IPR015946 K homology domain-like, alpha/beta CL55_RS09450 IPR003718 OsmC/Ohr family CL55_RS09450 IPR036102 OsmC/Ohr superfamily CL55_RS09455 IPR032466 Metal-dependent hydrolase CL55_RS09455 IPR002195 Dihydroorotase, conserved site CL55_RS09455 IPR006680 Amidohydrolase-related CL55_RS09455 IPR004721 Dihydroorotase homodimeric type CL55_RS09460 IPR025286 MOFRL-associated domain CL55_RS09460 IPR007835 MOFRL domain CL55_RS09460 IPR039760 MOFRL domain-containing protein CL55_RS09460 IPR038614 Glycerate kinase, N-terminal domain superfamily CL55_RS09460 IPR037035 Glycerate kinase-like, C-terminal domain superfamily CL55_RS09465 IPR036640 ABC transporter type 1, transmembrane domain superfamily CL55_RS09465 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS09465 IPR017871 ABC transporter, conserved site CL55_RS09465 IPR003439 ABC transporter-like CL55_RS09465 IPR039421 Type I protein exporter CL55_RS09465 IPR011527 ABC transporter type 1, transmembrane domain CL55_RS09465 IPR003593 AAA+ ATPase domain CL55_RS09470 IPR003564 Dihydroneopterin triphosphate diphosphatase CL55_RS09470 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS09470 IPR020084 NUDIX hydrolase, conserved site CL55_RS09470 IPR000086 NUDIX hydrolase domain CL55_RS09475 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CL55_RS09475 IPR006195 Aminoacyl-tRNA synthetase, class II CL55_RS09475 IPR004524 Aspartate-tRNA ligase, type 1 CL55_RS09475 IPR029351 GAD domain CL55_RS09475 IPR004115 GAD-like domain superfamily CL55_RS09475 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CL55_RS09475 IPR012340 Nucleic acid-binding, OB-fold CL55_RS09475 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CL55_RS09485 IPR010232 Probable protein kinase UbiB CL55_RS09485 IPR000719 Protein kinase domain CL55_RS09485 IPR011009 Protein kinase-like domain superfamily CL55_RS09485 IPR004147 UbiB domain CL55_RS09500 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS09500 IPR004033 UbiE/COQ5 methyltransferase CL55_RS09500 IPR023576 UbiE/COQ5 methyltransferase, conserved site CL55_RS09515 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CL55_RS09515 IPR005787 Threonine dehydratase, biosynthetic CL55_RS09515 IPR038110 Threonine dehydratase, ACT-like domain superfamily CL55_RS09515 IPR001721 Threonine dehydratase, ACT-like domain CL55_RS09515 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CL55_RS09515 IPR001926 Pyridoxal-phosphate dependent enzyme CL55_RS09525 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 CL55_RS09525 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal CL55_RS09525 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF CL55_RS09530 IPR011344 Single-stranded DNA-binding protein CL55_RS09530 IPR000424 Primosome PriB/single-strand DNA-binding CL55_RS09530 IPR012340 Nucleic acid-binding, OB-fold CL55_RS09535 IPR036259 MFS transporter superfamily CL55_RS09535 IPR020846 Major facilitator superfamily domain CL55_RS09535 IPR011701 Major facilitator superfamily CL55_RS09540 IPR017871 ABC transporter, conserved site CL55_RS09540 IPR041102 UvrA, interaction domain CL55_RS09540 IPR041552 UvrA DNA-binding domain CL55_RS09540 IPR003439 ABC transporter-like CL55_RS09540 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS09540 IPR004602 UvrABC system subunit A CL55_RS09545 IPR006153 Cation/H+ exchanger CL55_RS09545 IPR038770 Sodium/solute symporter superfamily CL55_RS09545 IPR036291 NAD(P)-binding domain superfamily CL55_RS09545 IPR006037 Regulator of K+ conductance, C-terminal CL55_RS09545 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CL55_RS09545 IPR003148 Regulator of K+ conductance, N-terminal CL55_RS09550 IPR000644 CBS domain CL55_RS09550 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type CL55_RS09550 IPR001347 Sugar isomerase (SIS) CL55_RS09550 IPR035474 KpsF-like, SIS domain CL55_RS09555 IPR010023 KdsC family CL55_RS09555 IPR036412 HAD-like superfamily CL55_RS09555 IPR023214 HAD superfamily CL55_RS09570 IPR017871 ABC transporter, conserved site CL55_RS09570 IPR003439 ABC transporter-like CL55_RS09570 IPR003593 AAA+ ATPase domain CL55_RS09570 IPR030921 LPS export ABC transporter, ATP-binding protein LptB CL55_RS09570 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CL55_RS09570 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS09575 IPR036567 Ribosome hibernation promotion factor-like CL55_RS09575 IPR003489 Ribosome hibernation promoting factor/RaiA CL55_RS09580 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN CL55_RS09580 IPR002178 PTS EIIA type-2 domain CL55_RS09580 IPR016152 Phosphotransferase/anion transporter CL55_RS09585 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal CL55_RS09585 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CL55_RS09585 IPR011104 HPr kinase/phosphorylase, C-terminal CL55_RS09585 IPR003755 HPr(Ser) kinase/phosphorylase CL55_RS09590 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS09590 IPR005337 RapZ-like family CL55_RS09595 IPR000445 Helix-hairpin-helix motif CL55_RS09595 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CL55_RS09595 IPR004035 Endonuclease III, iron-sulphur binding site CL55_RS09595 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CL55_RS09595 IPR029119 MutY, C-terminal CL55_RS09595 IPR005760 A/G-specific adenine glycosylase MutY CL55_RS09595 IPR015797 NUDIX hydrolase-like domain superfamily CL55_RS09595 IPR011257 DNA glycosylase CL55_RS09595 IPR003265 HhH-GPD domain CL55_RS09595 IPR004036 Endonuclease III-like, conserved site-2 CL55_RS09600 IPR010663 Zinc finger, FPG/IleRS-type CL55_RS09600 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site CL55_RS09600 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type CL55_RS09600 IPR010979 Ribosomal protein S13-like, H2TH CL55_RS09600 IPR035937 MutM-like, N-terminal CL55_RS09600 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain CL55_RS09600 IPR020629 Formamidopyrimidine-DNA glycosylase CL55_RS09600 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding CL55_RS09605 IPR019734 Tetratricopeptide repeat CL55_RS09605 IPR011990 Tetratricopeptide-like helical domain superfamily CL55_RS09605 IPR013026 Tetratricopeptide repeat-containing domain CL55_RS09610 IPR013750 GHMP kinase, C-terminal domain CL55_RS09610 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS09610 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS09610 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase CL55_RS09610 IPR006204 GHMP kinase N-terminal domain CL55_RS09610 IPR036554 GHMP kinase, C-terminal domain superfamily CL55_RS09620 IPR000836 Phosphoribosyltransferase domain CL55_RS09620 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type CL55_RS09620 IPR005946 Ribose-phosphate pyrophosphokinase CL55_RS09620 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site CL55_RS09620 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain CL55_RS09620 IPR029057 Phosphoribosyltransferase-like CL55_RS09625 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal CL55_RS09625 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily CL55_RS09625 IPR020057 Ribosomal protein L25, beta domain CL55_RS09625 IPR029751 Ribosomal protein L25 CL55_RS09625 IPR020055 Ribosomal protein L25, short-form CL55_RS09625 IPR037121 Ribosomal protein L25, C-terminal CL55_RS09625 IPR001021 Ribosomal protein L25, long-form CL55_RS09630 IPR018171 Peptidyl-tRNA hydrolase, conserved site CL55_RS09630 IPR036416 Peptidyl-tRNA hydrolase superfamily CL55_RS09630 IPR001328 Peptidyl-tRNA hydrolase CL55_RS09635 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CL55_RS09635 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CL55_RS09640 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS09640 IPR001980 Phosphopantetheine adenylyltransferase CL55_RS09640 IPR004821 Cytidyltransferase-like domain CL55_RS09645 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS09645 IPR004398 RNA methyltransferase, RsmD CL55_RS09645 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CL55_RS09650 IPR007863 Peptidase M16, C-terminal CL55_RS09650 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CL55_RS09655 IPR007863 Peptidase M16, C-terminal CL55_RS09655 IPR001431 Peptidase M16, zinc-binding site CL55_RS09655 IPR011765 Peptidase M16, N-terminal CL55_RS09655 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CL55_RS09660 IPR003593 AAA+ ATPase domain CL55_RS09660 IPR036225 SRP/SRP receptor, N-terminal CL55_RS09660 IPR004390 Signal-recognition particle receptor FtsY CL55_RS09660 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS09660 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CL55_RS09660 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CL55_RS09660 IPR013822 Signal recognition particle SRP54, helical bundle CL55_RS09665 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS09665 IPR009042 RNA polymerase sigma-70 region 1.2 CL55_RS09665 IPR007630 RNA polymerase sigma-70 region 4 CL55_RS09665 IPR000943 RNA polymerase sigma-70 CL55_RS09665 IPR007627 RNA polymerase sigma-70 region 2 CL55_RS09665 IPR013325 RNA polymerase sigma factor, region 2 CL55_RS09665 IPR014284 RNA polymerase sigma-70 like domain CL55_RS09665 IPR013324 RNA polymerase sigma factor, region 3/4-like CL55_RS09665 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria CL55_RS09670 IPR036249 Thioredoxin-like superfamily CL55_RS09670 IPR003782 Copper chaperone SCO1/SenC CL55_RS09675 IPR006369 Protohaem IX farnesyltransferase CL55_RS09675 IPR000537 UbiA prenyltransferase family CL55_RS09680 IPR023754 Heme A synthase, type 2 CL55_RS09680 IPR003780 COX15/CtaA family CL55_RS09700 IPR033945 Cytochrome c oxidase subunit III domain CL55_RS09700 IPR000298 Cytochrome c oxidase subunit III-like CL55_RS09700 IPR035973 Cytochrome c oxidase subunit III-like superfamily CL55_RS09700 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle CL55_RS09700 IPR024791 Cytochrome c oxidase subunit III CL55_RS09710 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily CL55_RS09710 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 CL55_RS09715 IPR014241 Cytochrome c oxidase, subunit I bacterial type CL55_RS09715 IPR023616 Cytochrome c oxidase-like, subunit I domain CL55_RS09715 IPR036927 Cytochrome c oxidase-like, subunit I superfamily CL55_RS09715 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site CL55_RS09715 IPR000883 Cytochrome c oxidase subunit I CL55_RS09715 IPR033944 Cytochrome c oxidase subunit I domain CL55_RS09720 IPR008972 Cupredoxin CL55_RS09720 IPR014222 Cytochrome c oxidase, subunit II CL55_RS09720 IPR001505 Copper centre Cu(A) CL55_RS09720 IPR002429 Cytochrome c oxidase subunit II-like C-terminal CL55_RS09720 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain CL55_RS09720 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily CL55_RS09725 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS09725 IPR013216 Methyltransferase type 11 CL55_RS09725 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC CL55_RS09735 IPR001537 tRNA/rRNA methyltransferase, SpoU type CL55_RS09735 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase CL55_RS09735 IPR029028 Alpha/beta knot methyltransferases CL55_RS09735 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CL55_RS09740 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CL55_RS09740 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CL55_RS09740 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent CL55_RS09740 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal CL55_RS09740 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal CL55_RS09740 IPR036291 NAD(P)-binding domain superfamily CL55_RS09745 IPR003708 Bacterial protein export chaperone SecB CL55_RS09745 IPR035958 SecB-like superfamily CL55_RS09750 IPR014025 Glutaredoxin subgroup CL55_RS09750 IPR011767 Glutaredoxin active site CL55_RS09750 IPR002109 Glutaredoxin CL55_RS09750 IPR036249 Thioredoxin-like superfamily CL55_RS09750 IPR011900 Glutaredoxin, GrxC CL55_RS09760 IPR013078 Histidine phosphatase superfamily, clade-1 CL55_RS09760 IPR005952 Phosphoglycerate mutase 1 CL55_RS09760 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CL55_RS09760 IPR029033 Histidine phosphatase superfamily CL55_RS09765 IPR005151 Tail specific protease CL55_RS09765 IPR004447 C-terminal-processing peptidase S41A CL55_RS09765 IPR036034 PDZ superfamily CL55_RS09765 IPR001478 PDZ domain CL55_RS09765 IPR029045 ClpP/crotonase-like domain superfamily CL55_RS09770 IPR012730 Molybdopterin synthase sulfurylase MoeB CL55_RS09770 IPR000594 THIF-type NAD/FAD binding fold CL55_RS09770 IPR035985 Ubiquitin-activating enzyme CL55_RS09775 IPR006318 Phosphotransferase system, enzyme I-like CL55_RS09775 IPR023151 PEP-utilising enzyme, conserved site CL55_RS09775 IPR018274 PEP-utilising enzyme, active site CL55_RS09775 IPR008279 PEP-utilising enzyme, mobile domain CL55_RS09775 IPR024692 Phosphotransferase system, enzyme I CL55_RS09775 IPR008731 Phosphotransferase system, enzyme I N-terminal CL55_RS09775 IPR036618 PtsI, HPr-binding domain superfamily CL55_RS09775 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CL55_RS09775 IPR040442 Pyruvate kinase-like domain superfamily CL55_RS09775 IPR036637 Phosphohistidine domain superfamily CL55_RS09775 IPR000121 PEP-utilising enzyme, C-terminal CL55_RS09780 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CL55_RS09780 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CL55_RS09780 IPR000032 Phosphocarrier protein HPr-like CL55_RS09780 IPR035895 HPr-like superfamily CL55_RS09790 IPR011761 ATP-grasp fold CL55_RS09790 IPR013815 ATP-grasp fold, subdomain 1 CL55_RS09790 IPR006284 Glutathione synthetase, prokaryotic CL55_RS09790 IPR004218 Prokaryotic glutathione synthetase, ATP-binding CL55_RS09790 IPR004215 Prokaryotic glutathione synthetase, N-terminal CL55_RS09790 IPR016185 Pre-ATP-grasp domain superfamily CL55_RS09800 IPR001905 Ammonium transporter CL55_RS09800 IPR024041 Ammonium transporter AmtB-like domain CL55_RS09800 IPR029020 Ammonium/urea transporter CL55_RS09800 IPR018047 Ammonium transporter, conserved site CL55_RS09805 IPR011322 Nitrogen regulatory PII-like, alpha/beta CL55_RS09805 IPR017918 Nitrogen regulatory protein PII, conserved site CL55_RS09805 IPR002332 Nitrogen regulatory protein P-II, urydylation site CL55_RS09805 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CL55_RS09805 IPR002187 Nitrogen regulatory protein PII CL55_RS09815 IPR007475 Ubiquinone biosynthesis accessory factor UbiK CL55_RS09825 IPR007197 Radical SAM CL55_RS09825 IPR003698 Lipoyl synthase CL55_RS09825 IPR031691 Lipoyl synthase, N-terminal CL55_RS09825 IPR006638 Elp3/MiaB/NifB CL55_RS09825 IPR013785 Aldolase-type TIM barrel CL55_RS09830 IPR020605 Octanoyltransferase, conserved site CL55_RS09830 IPR000544 Octanoyltransferase CL55_RS09830 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CL55_RS09835 IPR007454 Uncharacterised protein family UPF0250 CL55_RS09835 IPR027471 YbeD-like domain superfamily CL55_RS09845 IPR036249 Thioredoxin-like superfamily CL55_RS09855 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CL55_RS09855 IPR013196 Helix-turn-helix, type 11 CL55_RS09855 IPR008988 Transcriptional repressor, C-terminal CL55_RS09855 IPR004408 Biotin--acetyl-CoA-carboxylase ligase CL55_RS09855 IPR030855 Bifunctional ligase/repressor BirA CL55_RS09855 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS09855 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS09855 IPR004409 Biotin operon repressor, helix-turn-helix domain CL55_RS09855 IPR003142 Biotin protein ligase, C-terminal CL55_RS09860 IPR004619 Type III pantothenate kinase CL55_RS09865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS09865 IPR011914 RfaE bifunctional protein, domain II CL55_RS09865 IPR004821 Cytidyltransferase-like domain CL55_RS09870 IPR029760 Glutathione peroxidase conserved site CL55_RS09870 IPR029759 Glutathione peroxidase active site CL55_RS09870 IPR000889 Glutathione peroxidase CL55_RS09870 IPR036249 Thioredoxin-like superfamily CL55_RS09875 IPR002937 Amine oxidase CL55_RS09875 IPR012142 Tryptophan 2-monooxygenase CL55_RS09875 IPR006064 Cytokinin glycosidase CL55_RS09875 IPR036188 FAD/NAD(P)-binding domain superfamily CL55_RS09885 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS09885 IPR003333 Mycolic acid cyclopropane synthase CL55_RS09890 IPR036291 NAD(P)-binding domain superfamily CL55_RS09890 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS09890 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS09895 IPR013766 Thioredoxin domain CL55_RS09895 IPR017937 Thioredoxin, conserved site CL55_RS09895 IPR012336 Thioredoxin-like fold CL55_RS09895 IPR036249 Thioredoxin-like superfamily CL55_RS09895 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL CL55_RS09905 IPR001278 Arginine-tRNA ligase CL55_RS09905 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily CL55_RS09905 IPR035684 Arginyl-tRNA synthetase, catalytic core domain CL55_RS09905 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS09905 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CL55_RS09905 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CL55_RS09905 IPR005148 Arginyl tRNA synthetase N-terminal domain CL55_RS09905 IPR008909 DALR anticodon binding CL55_RS09915 IPR004223 Vitamin B12-dependent methionine synthase, activation domain CL55_RS09915 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain CL55_RS09915 IPR006158 Cobalamin (vitamin B12)-binding domain CL55_RS09915 IPR036724 Cobalamin-binding domain superfamily CL55_RS09915 IPR011005 Dihydropteroate synthase-like CL55_RS09915 IPR003726 Homocysteine-binding domain CL55_RS09915 IPR036589 Homocysteine-binding domain superfamily CL55_RS09915 IPR033706 Methionine synthase, B12-binding domain CL55_RS09915 IPR011822 Cobalamin-dependent methionine synthase CL55_RS09915 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily CL55_RS09915 IPR036594 Methionine synthase domain CL55_RS09915 IPR000489 Pterin-binding domain CL55_RS09920 IPR006158 Cobalamin (vitamin B12)-binding domain CL55_RS09920 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily CL55_RS09920 IPR004223 Vitamin B12-dependent methionine synthase, activation domain CL55_RS09920 IPR000489 Pterin-binding domain CL55_RS09920 IPR011005 Dihydropteroate synthase-like CL55_RS09920 IPR036594 Methionine synthase domain CL55_RS09920 IPR011822 Cobalamin-dependent methionine synthase CL55_RS09920 IPR033706 Methionine synthase, B12-binding domain CL55_RS09920 IPR036589 Homocysteine-binding domain superfamily CL55_RS09920 IPR003726 Homocysteine-binding domain CL55_RS09920 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain CL55_RS09920 IPR036724 Cobalamin-binding domain superfamily CL55_RS09935 IPR014188 Acrylyl-CoA reductase AcuI CL55_RS09935 IPR013149 Alcohol dehydrogenase, C-terminal CL55_RS09935 IPR013154 Alcohol dehydrogenase, N-terminal CL55_RS09935 IPR020843 Polyketide synthase, enoylreductase domain CL55_RS09935 IPR036291 NAD(P)-binding domain superfamily CL55_RS09935 IPR011032 GroES-like superfamily CL55_RS09945 IPR002563 Flavin reductase like domain CL55_RS09945 IPR012349 FMN-binding split barrel CL55_RS09945 IPR036390 Winged helix DNA-binding domain superfamily CL55_RS09945 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS09950 IPR004045 Glutathione S-transferase, N-terminal CL55_RS09950 IPR010987 Glutathione S-transferase, C-terminal-like CL55_RS09950 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CL55_RS09950 IPR004046 Glutathione S-transferase, C-terminal CL55_RS09950 IPR036249 Thioredoxin-like superfamily CL55_RS09955 IPR001036 Acriflavin resistance protein CL55_RS09955 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CL55_RS09960 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CL55_RS09960 IPR006143 RND efflux pump, membrane fusion protein CL55_RS09970 IPR003829 Pirin, N-terminal domain CL55_RS09970 IPR008778 Pirin, C-terminal domain CL55_RS09970 IPR012093 Pirin CL55_RS09970 IPR011051 RmlC-like cupin domain superfamily CL55_RS09970 IPR014710 RmlC-like jelly roll fold CL55_RS09975 IPR017932 Glutamine amidotransferase type 2 domain CL55_RS09975 IPR029055 Nucleophile aminohydrolases, N-terminal CL55_RS09975 IPR001347 Sugar isomerase (SIS) CL55_RS09975 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising CL55_RS09975 IPR035466 GlmS/AgaS, SIS domain 1 CL55_RS09975 IPR035490 GlmS/FrlB, SIS domain 2 CL55_RS09980 IPR011004 Trimeric LpxA-like superfamily CL55_RS09980 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS09980 IPR025877 MobA-like NTP transferase CL55_RS09980 IPR001451 Hexapeptide repeat CL55_RS09980 IPR038009 GlmU, C-terminal LbH domain CL55_RS09980 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CL55_RS09985 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CL55_RS09985 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CL55_RS09985 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type CL55_RS09985 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase CL55_RS09995 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS09995 IPR036291 NAD(P)-binding domain superfamily CL55_RS10005 IPR006674 HD domain CL55_RS10005 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CL55_RS10005 IPR002646 Poly A polymerase, head domain CL55_RS10005 IPR003607 HD/PDEase domain CL55_RS10005 IPR012006 tRNA nucleotidyltransferase, proteobacteria CL55_RS10015 IPR008258 Transglycosylase SLT domain 1 CL55_RS10015 IPR000189 Prokaryotic transglycosylase, active site CL55_RS10015 IPR008939 Lytic transglycosylase, superhelical U-shaped CL55_RS10015 IPR012289 Lytic transglycosylase, superhelical linker CL55_RS10015 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily CL55_RS10015 IPR023346 Lysozyme-like domain superfamily CL55_RS10020 IPR002698 5-formyltetrahydrofolate cyclo-ligase CL55_RS10020 IPR037171 NagB/RpiA transferase-like CL55_RS10020 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CL55_RS10025 IPR003171 Methylenetetrahydrofolate reductase CL55_RS10025 IPR004620 5,10-methylenetetrahydrofolate reductase CL55_RS10025 IPR029041 FAD-linked oxidoreductase-like CL55_RS10030 IPR042172 Adenosylhomocysteinase-like superfamily CL55_RS10030 IPR000043 Adenosylhomocysteinase-like CL55_RS10030 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CL55_RS10030 IPR036291 NAD(P)-binding domain superfamily CL55_RS10030 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site CL55_RS10035 IPR022629 S-adenosylmethionine synthetase, central domain CL55_RS10035 IPR022630 S-adenosylmethionine synthetase, C-terminal CL55_RS10035 IPR022636 S-adenosylmethionine synthetase superfamily CL55_RS10035 IPR022631 S-adenosylmethionine synthetase, conserved site CL55_RS10035 IPR002133 S-adenosylmethionine synthetase CL55_RS10035 IPR022628 S-adenosylmethionine synthetase, N-terminal CL55_RS10050 IPR018510 Diaminopimelate epimerase, active site CL55_RS10050 IPR001653 Diaminopimelate epimerase, DapF CL55_RS10055 IPR029057 Phosphoribosyltransferase-like CL55_RS10055 IPR000836 Phosphoribosyltransferase domain CL55_RS10055 IPR023031 Orotate phosphoribosyltransferase CL55_RS10055 IPR004467 Orotate phosphoribosyl transferase domain CL55_RS10060 IPR005135 Endonuclease/exonuclease/phosphatase CL55_RS10060 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CL55_RS10060 IPR020848 AP endonuclease 1, conserved site CL55_RS10060 IPR020847 AP endonuclease 1, binding site CL55_RS10060 IPR004808 AP endonuclease 1 CL55_RS10065 IPR011701 Major facilitator superfamily CL55_RS10065 IPR020846 Major facilitator superfamily domain CL55_RS10065 IPR036259 MFS transporter superfamily CL55_RS10065 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 CL55_RS10075 IPR008220 Homoserine/serine acetyltransferase MetX-like CL55_RS10075 IPR000073 Alpha/beta hydrolase fold-1 CL55_RS10075 IPR029058 Alpha/Beta hydrolase fold CL55_RS10080 IPR023769 Nucleoid occlusion factor SlmA CL55_RS10080 IPR001647 DNA-binding HTH domain, TetR-type CL55_RS10080 IPR009057 Homeobox-like domain superfamily CL55_RS10085 IPR041727 N-Acetyl-L-glutamate kinase, cyclic CL55_RS10085 IPR001057 Glutamate/acetylglutamate kinase CL55_RS10085 IPR001048 Aspartate/glutamate/uridylate kinase CL55_RS10085 IPR037528 Acetylglutamate kinase ArgB CL55_RS10085 IPR004662 Acetylglutamate kinase family CL55_RS10085 IPR036393 Acetylglutamate kinase-like superfamily CL55_RS10090 IPR012784 RNA polymerase-binding transcription factor DksA CL55_RS10090 IPR037187 DksA, N-terminal domain superfamily CL55_RS10090 IPR000962 Zinc finger, DksA/TraR C4-type CL55_RS10090 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CL55_RS10095 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS10095 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CL55_RS10095 IPR036627 CobW-like, C-terminal domain superfamily CL55_RS10095 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CL55_RS10100 IPR023009 Tyrosine recombinase XerC/XerD CL55_RS10100 IPR010998 Integrase/recombinase, N-terminal CL55_RS10100 IPR011010 DNA breaking-rejoining enzyme, catalytic core CL55_RS10100 IPR013762 Integrase-like, catalytic domain superfamily CL55_RS10100 IPR002104 Integrase, catalytic domain CL55_RS10100 IPR004107 Integrase, SAM-like, N-terminal CL55_RS10100 IPR011931 Tyrosine recombinase XerC CL55_RS10110 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CL55_RS10110 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site CL55_RS10110 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like CL55_RS10110 IPR018027 Asn/Gln amidotransferase CL55_RS10110 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 CL55_RS10110 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 CL55_RS10110 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E CL55_RS10110 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic CL55_RS10110 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit CL55_RS10115 IPR023631 Amidase signature domain CL55_RS10115 IPR000120 Amidase CL55_RS10115 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit CL55_RS10115 IPR036928 Amidase signature (AS) superfamily CL55_RS10115 IPR020556 Amidase, conserved site CL55_RS10120 IPR003837 Glu-tRNAGln amidotransferase C subunit CL55_RS10120 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C CL55_RS10125 IPR004753 Cell shape determining protein MreB CL55_RS10140 IPR017790 Penicillin-binding protein 2 CL55_RS10140 IPR012338 Beta-lactamase/transpeptidase-like CL55_RS10140 IPR001460 Penicillin-binding protein, transpeptidase CL55_RS10140 IPR005311 Penicillin-binding protein, dimerisation domain CL55_RS10140 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CL55_RS10145 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CL55_RS10145 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CL55_RS10145 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB CL55_RS10150 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CL55_RS10150 IPR020816 Histone-like DNA-binding protein, conserved site CL55_RS10150 IPR000119 Histone-like DNA-binding protein CL55_RS10165 IPR005228 Conserved hypothetical protein CHP00251 CL55_RS10165 IPR036591 YggU-like superfamily CL55_RS10165 IPR003746 Protein of unknown function DUF167 CL55_RS10170 IPR001765 Carbonic anhydrase CL55_RS10170 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site CL55_RS10170 IPR036874 Carbonic anhydrase superfamily CL55_RS10175 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase CL55_RS10175 IPR004960 Bacterial lipid A biosynthesis acyltransferase CL55_RS10180 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CL55_RS10180 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CL55_RS10180 IPR036986 RNA-binding S4 domain superfamily CL55_RS10180 IPR002942 RNA-binding S4 domain CL55_RS10180 IPR020103 Pseudouridine synthase, catalytic domain superfamily CL55_RS10180 IPR006145 Pseudouridine synthase, RsuA/RluA CL55_RS10180 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CL55_RS10185 IPR009000 Translation protein, beta-barrel domain superfamily CL55_RS10185 IPR000795 Transcription factor, GTP-binding domain CL55_RS10185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS10185 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily CL55_RS10185 IPR005225 Small GTP-binding protein domain CL55_RS10185 IPR041732 Peptide chain release factor 3, GTP-binding domain CL55_RS10185 IPR031157 Tr-type G domain, conserved site CL55_RS10185 IPR004161 Translation elongation factor EFTu-like, domain 2 CL55_RS10185 IPR035647 EF-G domain III/V-like CL55_RS10185 IPR032090 Peptide chain release factor 3, C-terminal CL55_RS10185 IPR004548 Peptide chain release factor 3 CL55_RS10210 IPR006464 N-acetyltransferase RimI/Ard1 CL55_RS10210 IPR000182 GNAT domain CL55_RS10210 IPR016181 Acyl-CoA N-acyltransferase CL55_RS10215 IPR013078 Histidine phosphatase superfamily, clade-1 CL55_RS10215 IPR029033 Histidine phosphatase superfamily CL55_RS10215 IPR023086 Phosphoglycerate mutase, GpmB, probable CL55_RS10215 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CL55_RS10245 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CL55_RS10245 IPR036412 HAD-like superfamily CL55_RS10245 IPR006328 L-2-Haloacid dehalogenase CL55_RS10245 IPR006439 HAD hydrolase, subfamily IA CL55_RS10245 IPR041492 Haloacid dehalogenase-like hydrolase CL55_RS10245 IPR023214 HAD superfamily CL55_RS10270 IPR029058 Alpha/Beta hydrolase fold CL55_RS10270 IPR022742 Serine aminopeptidase, S33 CL55_RS10270 IPR000073 Alpha/beta hydrolase fold-1 CL55_RS10295 IPR029787 Nucleotide cyclase CL55_RS10295 IPR000160 GGDEF domain CL55_RS10295 IPR037522 HD-GYP domain CL55_RS10295 IPR006674 HD domain CL55_RS10295 IPR003607 HD/PDEase domain CL55_RS10300 IPR001633 EAL domain CL55_RS10300 IPR005330 MHYT domain CL55_RS10300 IPR000160 GGDEF domain CL55_RS10300 IPR035919 EAL domain superfamily CL55_RS10300 IPR029787 Nucleotide cyclase CL55_RS10310 IPR001173 Glycosyltransferase 2-like CL55_RS10310 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS10310 IPR026463 Chitooligosaccharide synthase NodC CL55_RS10325 IPR003776 YcaO-like domain CL55_RS10325 IPR041080 YcaO cyclodehydratase, C-terminal CL55_RS10330 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CL55_RS10330 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CL55_RS10330 IPR002078 RNA polymerase sigma factor 54 interaction domain CL55_RS10330 IPR001789 Signal transduction response regulator, receiver domain CL55_RS10330 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS10330 IPR002197 DNA binding HTH domain, Fis-type CL55_RS10330 IPR009057 Homeobox-like domain superfamily CL55_RS10330 IPR011006 CheY-like superfamily CL55_RS10330 IPR003593 AAA+ ATPase domain CL55_RS10330 IPR025944 Sigma-54 interaction domain, conserved site CL55_RS10335 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CL55_RS10335 IPR005467 Histidine kinase domain CL55_RS10335 IPR035965 PAS domain superfamily CL55_RS10335 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator CL55_RS10335 IPR000014 PAS domain CL55_RS10335 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CL55_RS10335 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CL55_RS10335 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CL55_RS10335 IPR013767 PAS fold CL55_RS10335 IPR003660 HAMP domain CL55_RS10335 IPR003594 Histidine kinase/HSP90-like ATPase CL55_RS10345 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site CL55_RS10345 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type CL55_RS10345 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CL55_RS10345 IPR035926 NusB-like superfamily CL55_RS10345 IPR006027 NusB/RsmB/TIM44 CL55_RS10345 IPR023267 RNA (C5-cytosine) methyltransferase CL55_RS10345 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae CL55_RS10345 IPR004573 rRNA small subunit methyltransferase B CL55_RS10350 IPR036477 Formyl transferase, N-terminal domain superfamily CL55_RS10350 IPR002376 Formyl transferase, N-terminal CL55_RS10350 IPR037022 Formyl transferase, C-terminal domain superfamily CL55_RS10350 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CL55_RS10350 IPR005794 Methionyl-tRNA formyltransferase CL55_RS10350 IPR005793 Formyl transferase, C-terminal CL55_RS10350 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain CL55_RS10350 IPR011034 Formyl transferase-like, C-terminal domain superfamily CL55_RS10355 IPR036821 Peptide deformylase superfamily CL55_RS10355 IPR023635 Peptide deformylase CL55_RS10360 IPR003488 DNA recombination-mediator protein A CL55_RS10360 IPR036388 Winged helix-like DNA-binding domain superfamily CL55_RS10360 IPR041614 DprA, winged helix domain CL55_RS10365 IPR005738 DNA topoisomerase III CL55_RS10365 IPR034144 DNA topoisomerase 3-like, TOPRIM domain CL55_RS10365 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CL55_RS10365 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CL55_RS10365 IPR006171 TOPRIM domain CL55_RS10365 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CL55_RS10365 IPR000380 DNA topoisomerase, type IA CL55_RS10365 IPR023405 DNA topoisomerase, type IA, core domain CL55_RS10365 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CL55_RS10365 IPR013497 DNA topoisomerase, type IA, central CL55_RS10365 IPR023406 DNA topoisomerase, type IA, active site CL55_RS10365 IPR003601 DNA topoisomerase, type IA, domain 2 CL55_RS10370 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal CL55_RS10370 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal CL55_RS10370 IPR035077 Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain CL55_RS10370 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising CL55_RS10370 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site CL55_RS10370 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal CL55_RS10375 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CL55_RS10375 IPR005225 Small GTP-binding protein domain CL55_RS10375 IPR004520 tRNA modification GTPase MnmE CL55_RS10375 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS10375 IPR025867 MnmE, helical domain CL55_RS10375 IPR027368 tRNA modification GTPase MnmE domain 2 CL55_RS10375 IPR018948 GTP-binding protein TrmE, N-terminal CL55_RS10375 IPR031168 TrmE-type guanine nucleotide-binding domain CL55_RS10375 IPR006073 GTP binding domain CL55_RS10380 IPR038210 Membrane insertase YidC, periplasmic domain CL55_RS10380 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 CL55_RS10380 IPR028053 Membrane insertase YidC, N-terminal CL55_RS10380 IPR019998 Membrane insertase YidC CL55_RS10380 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CL55_RS10380 IPR038221 YidC, periplasmic domain superfamily CL55_RS10385 IPR000100 Ribonuclease P CL55_RS10385 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CL55_RS10385 IPR020568 Ribosomal protein S5 domain 2-type fold CL55_RS10385 IPR020539 Ribonuclease P, conserved site CL55_RS10405 IPR011283 Acetoacetyl-CoA reductase CL55_RS10405 IPR036291 NAD(P)-binding domain superfamily CL55_RS10405 IPR020904 Short-chain dehydrogenase/reductase, conserved site CL55_RS10405 IPR002347 Short-chain dehydrogenase/reductase SDR CL55_RS10430 IPR018392 LysM domain CL55_RS10430 IPR016047 Peptidase M23 CL55_RS10430 IPR011055 Duplicated hybrid motif CL55_RS10440 IPR025669 AAA domain CL55_RS10440 IPR027417 P-loop containing nucleoside triphosphate hydrolase CL55_RS10445 IPR017806 Ergothioneine biosynthesis protein EgtB CL55_RS10445 IPR034660 DinB/YfiT-like putative metalloenzymes CL55_RS10445 IPR032890 Hercynine oxygenase, Actinobacteria CL55_RS10445 IPR016187 C-type lectin fold CL55_RS10445 IPR042095 Sulfatase-modifying factor enzyme superfamily CL55_RS10445 IPR005532 Sulfatase-modifying factor enzyme CL55_RS10445 IPR024775 DinB-like domain CL55_RS10450 IPR036259 MFS transporter superfamily CL55_RS10450 IPR011701 Major facilitator superfamily CL55_RS10450 IPR023727 Lysophospholipid transporter LplT CL55_RS10455 IPR029044 Nucleotide-diphospho-sugar transferases CL55_RS10455 IPR002495 Glycosyl transferase, family 8 CL55_RS10455 IPR001173 Glycosyltransferase 2-like CL55_RS10460 IPR027469 Cation efflux transmembrane domain superfamily CL55_RS10460 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CL55_RS10460 IPR002524 Cation efflux protein CL55_RS10460 IPR023500 Zinc transporter ZitB CL55_RS10470 IPR014710 RmlC-like jelly roll fold CL55_RS10470 IPR018490 Cyclic nucleotide-binding-like CL55_RS10470 IPR018488 Cyclic nucleotide-binding, conserved site CL55_RS10470 IPR000595 Cyclic nucleotide-binding domain CL55_RS10470 IPR005821 Ion transport domain CL55_RS10470 IPR028325 Voltage-gated potassium channel CL55_RS10480 IPR021728 Protein of unknown function DUF3300