locus-tag class description CL55_RS00005 PF00308 Bacterial dnaA protein CL55_RS00005 PF11638 DnaA N-terminal domain CL55_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CL55_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CL55_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CL55_RS00010 PF02767 DNA polymerase III beta subunit, central domain CL55_RS00015 PF01751 Toprim domain CL55_RS00015 PF00204 DNA gyrase B CL55_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CL55_RS00015 PF18053 DNA gyrase B subunit insert domain CL55_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS00030 PF12399 Branched-chain amino acid ATP-binding cassette transporter CL55_RS00030 PF00005 ABC transporter CL55_RS00035 PF00005 ABC transporter CL55_RS00055 PF01134 Glucose inhibited division protein A CL55_RS00055 PF13932 GidA associated domain CL55_RS00060 PF02527 rRNA small subunit methyltransferase G CL55_RS00065 PF13614 AAA domain CL55_RS00070 PF17762 HTH domain found in ParB protein CL55_RS00070 PF02195 ParB-like nuclease domain CL55_RS00080 PF00119 ATP synthase A chain CL55_RS00085 PF00137 ATP synthase subunit C CL55_RS00090 PF00430 ATP synthase B/B' CF(0) CL55_RS00095 PF00213 ATP synthase delta (OSCP) subunit CL55_RS00100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CL55_RS00100 PF00306 ATP synthase alpha/beta chain, C terminal domain CL55_RS00100 PF02874 ATP synthase alpha/beta family, beta-barrel domain CL55_RS00105 PF00231 ATP synthase CL55_RS00110 PF02874 ATP synthase alpha/beta family, beta-barrel domain CL55_RS00110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CL55_RS00115 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CL55_RS00115 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CL55_RS00120 PF01208 Uroporphyrinogen decarboxylase (URO-D) CL55_RS00125 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CL55_RS00125 PF17764 3′ DNA-binding domain (3′BD) CL55_RS00125 PF00271 Helicase conserved C-terminal domain CL55_RS00125 PF18074 Primosomal protein N C-terminal domain CL55_RS00125 PF00270 DEAD/DEAH box helicase CL55_RS00130 PF01597 Glycine cleavage H-protein CL55_RS00155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CL55_RS00160 PF13580 SIS domain CL55_RS00170 PF00034 Cytochrome c CL55_RS00225 PF03143 Elongation factor Tu C-terminal domain CL55_RS00225 PF03144 Elongation factor Tu domain 2 CL55_RS00225 PF00009 Elongation factor Tu GTP binding domain CL55_RS00235 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CL55_RS00240 PF00467 KOW motif CL55_RS00240 PF02357 Transcription termination factor nusG CL55_RS00245 PF00298 Ribosomal protein L11, RNA binding domain CL55_RS00245 PF03946 Ribosomal protein L11, N-terminal domain CL55_RS00250 PF00687 Ribosomal protein L1p/L10e family CL55_RS00255 PF00466 Ribosomal protein L10 CL55_RS00260 PF16320 Ribosomal protein L7/L12 dimerisation domain CL55_RS00260 PF00542 Ribosomal protein L7/L12 C-terminal domain CL55_RS00265 PF04565 RNA polymerase Rpb2, domain 3 CL55_RS00265 PF04563 RNA polymerase beta subunit CL55_RS00265 PF04561 RNA polymerase Rpb2, domain 2 CL55_RS00265 PF10385 RNA polymerase beta subunit external 1 domain CL55_RS00265 PF00562 RNA polymerase Rpb2, domain 6 CL55_RS00265 PF04560 RNA polymerase Rpb2, domain 7 CL55_RS00270 PF04997 RNA polymerase Rpb1, domain 1 CL55_RS00270 PF04983 RNA polymerase Rpb1, domain 3 CL55_RS00270 PF00623 RNA polymerase Rpb1, domain 2 CL55_RS00270 PF05000 RNA polymerase Rpb1, domain 4 CL55_RS00270 PF04998 RNA polymerase Rpb1, domain 5 CL55_RS00275 PF00164 Ribosomal protein S12/S23 CL55_RS00280 PF00177 Ribosomal protein S7p/S5e CL55_RS00285 PF03764 Elongation factor G, domain IV CL55_RS00285 PF14492 Elongation Factor G, domain II CL55_RS00285 PF00679 Elongation factor G C-terminus CL55_RS00285 PF00009 Elongation factor Tu GTP binding domain CL55_RS00285 PF03144 Elongation factor Tu domain 2 CL55_RS00290 PF03143 Elongation factor Tu C-terminal domain CL55_RS00290 PF03144 Elongation factor Tu domain 2 CL55_RS00290 PF00009 Elongation factor Tu GTP binding domain CL55_RS00295 PF00338 Ribosomal protein S10p/S20e CL55_RS00300 PF00297 Ribosomal protein L3 CL55_RS00305 PF00573 Ribosomal protein L4/L1 family CL55_RS00310 PF00276 Ribosomal protein L23 CL55_RS00315 PF00181 Ribosomal Proteins L2, RNA binding domain CL55_RS00315 PF03947 Ribosomal Proteins L2, C-terminal domain CL55_RS00320 PF00203 Ribosomal protein S19 CL55_RS00325 PF00237 Ribosomal protein L22p/L17e CL55_RS00330 PF07650 KH domain CL55_RS00330 PF00189 Ribosomal protein S3, C-terminal domain CL55_RS00335 PF00252 Ribosomal protein L16p/L10e CL55_RS00340 PF00831 Ribosomal L29 protein CL55_RS00345 PF00366 Ribosomal protein S17 CL55_RS00350 PF00238 Ribosomal protein L14p/L23e CL55_RS00355 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CL55_RS00355 PF00467 KOW motif CL55_RS00360 PF00281 Ribosomal protein L5 CL55_RS00360 PF00673 ribosomal L5P family C-terminus CL55_RS00365 PF00253 Ribosomal protein S14p/S29e CL55_RS00370 PF00410 Ribosomal protein S8 CL55_RS00375 PF00347 Ribosomal protein L6 CL55_RS00380 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CL55_RS00385 PF00333 Ribosomal protein S5, N-terminal domain CL55_RS00385 PF03719 Ribosomal protein S5, C-terminal domain CL55_RS00390 PF00327 Ribosomal protein L30p/L7e CL55_RS00395 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CL55_RS00400 PF00344 SecY translocase CL55_RS00405 PF01176 Translation initiation factor 1A / IF-1 CL55_RS00410 PF00444 Ribosomal protein L36 CL55_RS00415 PF00416 Ribosomal protein S13/S18 CL55_RS00420 PF00411 Ribosomal protein S11 CL55_RS00425 PF01479 S4 domain CL55_RS00425 PF00163 Ribosomal protein S4/S9 N-terminal domain CL55_RS00430 PF01000 RNA polymerase Rpb3/RpoA insert domain CL55_RS00430 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CL55_RS00430 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CL55_RS00435 PF01196 Ribosomal protein L17 CL55_RS00445 PF11412 Disulphide bond corrector protein DsbC CL55_RS00445 PF00085 Thioredoxin CL55_RS00445 PF02683 Cytochrome C biogenesis protein transmembrane region CL55_RS00450 PF00490 Delta-aminolevulinic acid dehydratase CL55_RS00455 PF01926 50S ribosome-binding GTPase CL55_RS00460 PF00034 Cytochrome c CL55_RS00465 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CL55_RS00465 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CL55_RS00475 PF01491 Frataxin-like domain CL55_RS00480 PF01761 3-dehydroquinate synthase CL55_RS00485 PF01202 Shikimate kinase CL55_RS00490 PF07660 Secretin and TonB N terminus short domain CL55_RS00490 PF03958 Bacterial type II/III secretion system short domain CL55_RS00490 PF00263 Bacterial type II and III secretion system protein CL55_RS00490 PF11741 AMIN domain CL55_RS00500 PF00912 Transglycosylase CL55_RS00500 PF17092 Penicillin-binding protein OB-like domain CL55_RS00500 PF00905 Penicillin binding protein transpeptidase domain CL55_RS00510 PF00310 Glutamine amidotransferases class-II CL55_RS00510 PF01493 GXGXG motif CL55_RS00510 PF01645 Conserved region in glutamate synthase CL55_RS00510 PF04898 Glutamate synthase central domain CL55_RS00515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CL55_RS00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS00520 PF00005 ABC transporter CL55_RS00525 PF02405 Permease MlaE CL55_RS00530 PF02470 MlaD protein CL55_RS00550 PF00005 ABC transporter CL55_RS00555 PF01061 ABC-2 type transporter CL55_RS00560 PF01722 BolA-like protein CL55_RS00565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CL55_RS00570 PF01634 ATP phosphoribosyltransferase CL55_RS00575 PF00815 Histidinol dehydrogenase CL55_RS00580 PF00155 Aminotransferase class I and II CL55_RS00585 PF00475 Imidazoleglycerol-phosphate dehydratase CL55_RS00590 PF00117 Glutamine amidotransferase class-I CL55_RS00595 PF00977 Histidine biosynthesis protein CL55_RS00600 PF00977 Histidine biosynthesis protein CL55_RS00605 PF01502 Phosphoribosyl-AMP cyclohydrolase CL55_RS00610 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CL55_RS00620 PF02416 mttA/Hcf106 family CL55_RS00625 PF02416 mttA/Hcf106 family CL55_RS00630 PF00902 Sec-independent protein translocase protein (TatC) CL55_RS00640 PF13609 Gram-negative porin CL55_RS00655 PF01741 Large-conductance mechanosensitive channel, MscL CL55_RS00660 PF00355 Rieske [2Fe-2S] domain CL55_RS00660 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CL55_RS00670 PF02167 Cytochrome C1 family CL55_RS00675 PF00043 Glutathione S-transferase, C-terminal domain CL55_RS00675 PF02798 Glutathione S-transferase, N-terminal domain CL55_RS00680 PF04386 Stringent starvation protein B CL55_RS00695 PF00083 Sugar (and other) transporter CL55_RS00695 PF07690 Major Facilitator Superfamily CL55_RS00700 PF02646 RmuC family CL55_RS00705 PF00462 Glutaredoxin CL55_RS00710 PF17827 PrmC N-terminal domain CL55_RS00710 PF05175 Methyltransferase small domain CL55_RS00715 PF00472 RF-1 domain CL55_RS00715 PF03462 PCRF domain CL55_RS00720 PF01488 Shikimate / quinate 5-dehydrogenase CL55_RS00720 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CL55_RS00720 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CL55_RS00730 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CL55_RS00735 PF11455 Protein of unknown function (DUF3018) CL55_RS00740 PF03167 Uracil DNA glycosylase superfamily CL55_RS00750 PF10411 Disulfide bond isomerase protein N-terminus CL55_RS00750 PF13098 Thioredoxin-like domain CL55_RS00755 PF01494 FAD binding domain CL55_RS00760 PF01926 50S ribosome-binding GTPase CL55_RS00760 PF06071 Protein of unknown function (DUF933) CL55_RS00775 PF00218 Indole-3-glycerol phosphate synthase CL55_RS00780 PF02885 Glycosyl transferase family, helical bundle domain CL55_RS00780 PF00591 Glycosyl transferase family, a/b domain CL55_RS00785 PF00117 Glutamine amidotransferase class-I CL55_RS00790 PF04715 Anthranilate synthase component I, N terminal region CL55_RS00790 PF00425 chorismate binding enzyme CL55_RS00795 PF00834 Ribulose-phosphate 3 epimerase family CL55_RS00800 PF04379 ApaG domain CL55_RS00815 PF00378 Enoyl-CoA hydratase/isomerase CL55_RS00820 PF07687 Peptidase dimerisation domain CL55_RS00820 PF01546 Peptidase family M20/M25/M40 CL55_RS00830 PF00155 Aminotransferase class I and II CL55_RS00835 PF00202 Aminotransferase class-III CL55_RS00840 PF04055 Radical SAM superfamily CL55_RS00840 PF06968 Biotin and Thiamin Synthesis associated domain CL55_RS00845 PF03232 Ubiquinone biosynthesis protein COQ7 CL55_RS00850 PF02381 MraZ protein, putative antitoxin-like CL55_RS00855 PF01795 MraW methylase family CL55_RS00865 PF00905 Penicillin binding protein transpeptidase domain CL55_RS00865 PF03717 Penicillin-binding Protein dimerisation domain CL55_RS00870 PF08245 Mur ligase middle domain CL55_RS00870 PF02875 Mur ligase family, glutamate ligase domain CL55_RS00875 PF08245 Mur ligase middle domain CL55_RS00875 PF01225 Mur ligase family, catalytic domain CL55_RS00875 PF02875 Mur ligase family, glutamate ligase domain CL55_RS00880 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CL55_RS00880 PF00953 Glycosyl transferase family 4 CL55_RS00885 PF08245 Mur ligase middle domain CL55_RS00885 PF02875 Mur ligase family, glutamate ligase domain CL55_RS00890 PF01098 Cell cycle protein CL55_RS00895 PF03033 Glycosyltransferase family 28 N-terminal domain CL55_RS00895 PF04101 Glycosyltransferase family 28 C-terminal domain CL55_RS00900 PF08245 Mur ligase middle domain CL55_RS00900 PF01225 Mur ligase family, catalytic domain CL55_RS00900 PF02875 Mur ligase family, glutamate ligase domain CL55_RS00905 PF07478 D-ala D-ala ligase C-terminus CL55_RS00905 PF01820 D-ala D-ala ligase N-terminus CL55_RS00910 PF03799 Cell division protein FtsQ CL55_RS00910 PF08478 POTRA domain, FtsQ-type CL55_RS00915 PF02491 SHS2 domain inserted in FTSA CL55_RS00920 PF12327 FtsZ family, C-terminal domain CL55_RS00920 PF00091 Tubulin/FtsZ family, GTPase domain CL55_RS00925 PF08534 Redoxin CL55_RS00930 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CL55_RS00940 PF07517 SecA DEAD-like domain CL55_RS00940 PF01043 SecA preprotein cross-linking domain CL55_RS00940 PF07516 SecA Wing and Scaffold domain CL55_RS00940 PF02810 SEC-C motif CL55_RS00950 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CL55_RS00950 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CL55_RS00955 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS00970 PF01960 ArgJ family CL55_RS00980 PF00293 NUDIX domain CL55_RS00985 PF07072 Cell division protein CL55_RS00990 PF01121 Dephospho-CoA kinase CL55_RS00995 PF06750 Bacterial Peptidase A24 N-terminal domain CL55_RS00995 PF01478 Type IV leader peptidase family CL55_RS01000 PF00482 Type II secretion system (T2SS), protein F CL55_RS01005 PF00437 Type II/IV secretion system protein CL55_RS01005 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CL55_RS01010 PF03471 Transporter associated domain CL55_RS01010 PF01595 Cyclin M transmembrane N-terminal domain CL55_RS01010 PF00571 CBS domain CL55_RS01030 PF02558 Ketopantoate reductase PanE/ApbA CL55_RS01030 PF08546 Ketopantoate reductase PanE/ApbA C terminal CL55_RS01045 PF00348 Polyprenyl synthetase CL55_RS01050 PF00829 Ribosomal prokaryotic L21 protein CL55_RS01055 PF01016 Ribosomal L27 protein CL55_RS01060 PF01926 50S ribosome-binding GTPase CL55_RS01060 PF01018 GTP1/OBG CL55_RS01065 PF00696 Amino acid kinase family CL55_RS01065 PF01472 PUA domain CL55_RS01075 PF00293 NUDIX domain CL55_RS01080 PF04073 Aminoacyl-tRNA editing domain CL55_RS01080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CL55_RS01080 PF03129 Anticodon binding domain CL55_RS01085 PF02881 SRP54-type protein, helical bundle domain CL55_RS01085 PF00448 SRP54-type protein, GTPase domain CL55_RS01085 PF02978 Signal peptide binding domain CL55_RS01095 PF01510 N-acetylmuramoyl-L-alanine amidase CL55_RS01100 PF03477 ATP cone domain CL55_RS01100 PF00317 Ribonucleotide reductase, all-alpha domain CL55_RS01100 PF02867 Ribonucleotide reductase, barrel domain CL55_RS01105 PF00268 Ribonucleotide reductase, small chain CL55_RS01130 PF00289 Biotin carboxylase, N-terminal domain CL55_RS01130 PF02785 Biotin carboxylase C-terminal domain CL55_RS01130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CL55_RS01135 PF00364 Biotin-requiring enzyme CL55_RS01140 PF01220 Dehydroquinase class II CL55_RS01145 PF00578 AhpC/TSA family CL55_RS01150 PF08245 Mur ligase middle domain CL55_RS01150 PF01225 Mur ligase family, catalytic domain CL55_RS01150 PF02875 Mur ligase family, glutamate ligase domain CL55_RS01160 PF00575 S1 RNA binding domain CL55_RS01160 PF08206 Ribonuclease B OB domain CL55_RS01160 PF00773 RNB domain CL55_RS01170 PF08501 Shikimate dehydrogenase substrate binding domain CL55_RS01170 PF01488 Shikimate / quinate 5-dehydrogenase CL55_RS01170 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CL55_RS01175 PF00912 Transglycosylase CL55_RS01180 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CL55_RS01185 PF01544 CorA-like Mg2+ transporter protein CL55_RS01190 PF02464 Competence-damaged protein CL55_RS01195 PF04608 Phosphatidylglycerophosphatase A CL55_RS01200 PF00586 AIR synthase related protein, N-terminal domain CL55_RS01200 PF02769 AIR synthase related protein, C-terminal domain CL55_RS01205 PF00390 Malic enzyme, N-terminal domain CL55_RS01205 PF01515 Phosphate acetyl/butaryl transferase CL55_RS01205 PF03949 Malic enzyme, NAD binding domain CL55_RS01215 PF04452 RNA methyltransferase CL55_RS01220 PF00456 Transketolase, thiamine diphosphate binding domain CL55_RS01220 PF02780 Transketolase, C-terminal domain CL55_RS01220 PF02779 Transketolase, pyrimidine binding domain CL55_RS01225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL55_RS01225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CL55_RS01230 PF01475 Ferric uptake regulator family CL55_RS01235 PF04355 SmpA / OmlA family CL55_RS01240 PF01113 Dihydrodipicolinate reductase, N-terminus CL55_RS01240 PF05173 Dihydrodipicolinate reductase, C-terminus CL55_RS01245 PF09334 tRNA synthetases class I (M) CL55_RS01245 PF13603 Leucyl-tRNA synthetase, Domain 2 CL55_RS01245 PF00133 tRNA synthetases class I (I, L, M and V) CL55_RS01245 PF08264 Anticodon-binding domain of tRNA CL55_RS01260 PF00171 Aldehyde dehydrogenase family CL55_RS01265 PF03653 Uncharacterised protein family (UPF0093) CL55_RS01270 PF02926 THUMP domain CL55_RS01270 PF01170 Putative RNA methylase family UPF0020 CL55_RS01275 PF00301 Rubredoxin CL55_RS01280 PF00202 Aminotransferase class-III CL55_RS01285 PF00149 Calcineurin-like phosphoesterase CL55_RS01290 PF03441 FAD binding domain of DNA photolyase CL55_RS01290 PF00875 DNA photolyase CL55_RS01300 PF02622 Uncharacterized ACR, COG1678 CL55_RS01305 PF03652 Holliday junction resolvase CL55_RS01310 PF00156 Phosphoribosyl transferase domain CL55_RS01315 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CL55_RS01315 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CL55_RS01345 PF16363 GDP-mannose 4,6 dehydratase CL55_RS01360 PF00534 Glycosyl transferases group 1 CL55_RS01360 PF13439 Glycosyltransferase Family 4 CL55_RS01370 PF16363 GDP-mannose 4,6 dehydratase CL55_RS01375 PF04321 RmlD substrate binding domain CL55_RS01380 PF00483 Nucleotidyl transferase CL55_RS01385 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CL55_RS01390 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CL55_RS01395 PF02321 Outer membrane efflux protein CL55_RS01400 PF02673 Bacitracin resistance protein BacA CL55_RS01410 PF02390 Putative methyltransferase CL55_RS01425 PF00171 Aldehyde dehydrogenase family CL55_RS01430 PF01029 NusB family CL55_RS01435 PF00885 6,7-dimethyl-8-ribityllumazine synthase CL55_RS01440 PF00925 GTP cyclohydrolase II CL55_RS01440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CL55_RS01460 PF01872 RibD C-terminal domain CL55_RS01460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CL55_RS01465 PF00677 Lumazine binding domain CL55_RS01470 PF06508 Queuosine biosynthesis protein QueC CL55_RS01480 PF00691 OmpA family CL55_RS01485 PF07676 WD40-like Beta Propeller Repeat CL55_RS01485 PF04052 TolB amino-terminal domain CL55_RS01495 PF02472 Biopolymer transport protein ExbD/TolR CL55_RS01500 PF01618 MotA/TolQ/ExbB proton channel family CL55_RS01505 PF00464 Serine hydroxymethyltransferase CL55_RS01510 PF03477 ATP cone domain CL55_RS01515 PF16363 GDP-mannose 4,6 dehydratase CL55_RS01520 PF05191 Adenylate kinase, active site lid CL55_RS01525 PF02348 Cytidylyltransferase CL55_RS01530 PF03966 Trm112p-like protein CL55_RS01535 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CL55_RS01540 PF02472 Biopolymer transport protein ExbD/TolR CL55_RS01550 PF02601 Exonuclease VII, large subunit CL55_RS01550 PF13742 OB-fold nucleic acid binding domain CL55_RS01555 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CL55_RS01555 PF01565 FAD binding domain CL55_RS01560 PF04461 Protein of unknown function (DUF520) CL55_RS01565 PF00589 Phage integrase family CL55_RS01565 PF02899 Phage integrase, N-terminal SAM-like domain CL55_RS01570 PF02660 Glycerol-3-phosphate acyltransferase CL55_RS01580 PF01227 GTP cyclohydrolase I CL55_RS01600 PF16363 GDP-mannose 4,6 dehydratase CL55_RS01605 PF01050 Mannose-6-phosphate isomerase CL55_RS01605 PF00483 Nucleotidyl transferase CL55_RS01610 PF16363 GDP-mannose 4,6 dehydratase CL55_RS01635 PF02543 Carbamoyltransferase N-terminus CL55_RS01635 PF16861 Carbamoyltransferase C-terminus CL55_RS01645 PF01370 NAD dependent epimerase/dehydratase family CL55_RS01675 PF00664 ABC transporter transmembrane region CL55_RS01675 PF00005 ABC transporter CL55_RS01680 PF02719 Polysaccharide biosynthesis protein CL55_RS01680 PF08485 Polysaccharide biosynthesis protein C-terminal CL55_RS01690 PF02719 Polysaccharide biosynthesis protein CL55_RS01705 PF02397 Bacterial sugar transferase CL55_RS01710 PF01370 NAD dependent epimerase/dehydratase family CL55_RS01715 PF02350 UDP-N-acetylglucosamine 2-epimerase CL55_RS01760 PF00753 Metallo-beta-lactamase superfamily CL55_RS01765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CL55_RS01765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CL55_RS01780 PF00550 Phosphopantetheine attachment site CL55_RS01785 PF00501 AMP-binding enzyme CL55_RS01785 PF13193 AMP-binding enzyme C-terminal domain CL55_RS01800 PF01699 Sodium/calcium exchanger protein CL55_RS01810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CL55_RS01835 PF04909 Amidohydrolase CL55_RS01840 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS01845 PF00561 alpha/beta hydrolase fold CL55_RS01855 PF04751 Protein of unknown function (DUF615) CL55_RS01860 PF00732 GMC oxidoreductase CL55_RS01860 PF05199 GMC oxidoreductase CL55_RS01870 PF01925 Sulfite exporter TauE/SafE CL55_RS01875 PF00753 Metallo-beta-lactamase superfamily CL55_RS01915 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CL55_RS01915 PF01464 Transglycosylase SLT domain CL55_RS01920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CL55_RS01930 PF07690 Major Facilitator Superfamily CL55_RS01935 PF03971 Monomeric isocitrate dehydrogenase CL55_RS01940 PF00174 Oxidoreductase molybdopterin binding domain CL55_RS01945 PF01794 Ferric reductase like transmembrane component CL55_RS01950 PF08212 Lipocalin-like domain CL55_RS01965 PF00106 short chain dehydrogenase CL55_RS01975 PF00849 RNA pseudouridylate synthase CL55_RS01975 PF01479 S4 domain CL55_RS01980 PF01329 Pterin 4 alpha carbinolamine dehydratase CL55_RS01995 PF00583 Acetyltransferase (GNAT) family CL55_RS01995 PF13607 Succinyl-CoA ligase like flavodoxin domain CL55_RS01995 PF13380 CoA binding domain CL55_RS02010 PF09312 SurA N-terminal domain CL55_RS02025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CL55_RS02025 PF00529 HlyD membrane-fusion protein of T1SS CL55_RS02030 PF00873 AcrB/AcrD/AcrF family CL55_RS02035 PF00543 Nitrogen regulatory protein P-II CL55_RS02040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CL55_RS02050 PF02913 FAD linked oxidases, C-terminal domain CL55_RS02050 PF13183 4Fe-4S dicluster domain CL55_RS02050 PF01565 FAD binding domain CL55_RS02105 PF00563 EAL domain CL55_RS02105 PF03707 Bacterial signalling protein N terminal repeat CL55_RS02105 PF00990 Diguanylate cyclase, GGDEF domain CL55_RS02110 PF00309 Sigma-54 factor, Activator interacting domain (AID) CL55_RS02110 PF04963 Sigma-54 factor, core binding domain CL55_RS02110 PF04552 Sigma-54, DNA binding domain CL55_RS02170 PF04539 Sigma-70 region 3 CL55_RS02170 PF04542 Sigma-70 region 2 CL55_RS02170 PF04545 Sigma-70, region 4 CL55_RS02180 PF00448 SRP54-type protein, GTPase domain CL55_RS02185 PF00771 FHIPEP family CL55_RS02200 PF00669 Bacterial flagellin N-terminal helical region CL55_RS02200 PF00700 Bacterial flagellin C-terminal helical region CL55_RS02205 PF03646 FlaG protein CL55_RS02210 PF07195 Flagellar hook-associated protein 2 C-terminus CL55_RS02210 PF07196 Flagellin hook IN motif CL55_RS02210 PF02465 Flagellar hook-associated protein 2 N-terminus CL55_RS02225 PF01312 FlhB HrpN YscU SpaS Family CL55_RS02230 PF02049 Flagellar hook-basal body complex protein FliE CL55_RS02235 PF00158 Sigma-54 interaction domain CL55_RS02235 PF00072 Response regulator receiver domain CL55_RS02235 PF02954 Bacterial regulatory protein, Fis family CL55_RS02240 PF13188 PAS domain CL55_RS02240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS02240 PF00512 His Kinase A (phospho-acceptor) domain CL55_RS02245 PF08345 Flagellar M-ring protein C-terminal CL55_RS02245 PF01514 Secretory protein of YscJ/FliF family CL55_RS02250 PF14842 FliG N-terminal domain CL55_RS02250 PF14841 FliG middle domain CL55_RS02250 PF01706 FliG C-terminal domain CL55_RS02260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CL55_RS02260 PF18269 T3SS EscN ATPase C-terminal domain CL55_RS02280 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CL55_RS02280 PF02154 Flagellar motor switch protein FliM CL55_RS02285 PF16973 Flagellar motor switch protein FliN N-terminal CL55_RS02285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CL55_RS02290 PF04347 Flagellar biosynthesis protein, FliO CL55_RS02295 PF00813 FliP family CL55_RS02300 PF01313 Bacterial export proteins, family 3 CL55_RS02315 PF00194 Eukaryotic-type carbonic anhydrase CL55_RS02325 PF00460 Flagella basal body rod protein CL55_RS02330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CL55_RS02330 PF00460 Flagella basal body rod protein CL55_RS02340 PF07559 Flagellar basal body protein FlaE CL55_RS02340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CL55_RS02340 PF00460 Flagella basal body rod protein CL55_RS02345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CL55_RS02345 PF00460 Flagella basal body rod protein CL55_RS02350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CL55_RS02350 PF00460 Flagella basal body rod protein CL55_RS02355 PF02107 Flagellar L-ring protein CL55_RS02360 PF02119 Flagellar P-ring protein CL55_RS02370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CL55_RS02370 PF00460 Flagella basal body rod protein CL55_RS02380 PF01618 MotA/TolQ/ExbB proton channel family CL55_RS02385 PF13677 Membrane MotB of proton-channel complex MotA/MotB CL55_RS02385 PF00691 OmpA family CL55_RS02405 PF01312 FlhB HrpN YscU SpaS Family CL55_RS02525 PF13192 Thioredoxin domain CL55_RS02525 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS02530 PF10417 C-terminal domain of 1-Cys peroxiredoxin CL55_RS02530 PF00578 AhpC/TSA family CL55_RS02540 PF02915 Rubrerythrin CL55_RS02545 PF02754 Cysteine-rich domain CL55_RS02545 PF13183 4Fe-4S dicluster domain CL55_RS02555 PF03466 LysR substrate binding domain CL55_RS02555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CL55_RS02565 PF10017 Histidine-specific methyltransferase, SAM-dependent CL55_RS02570 PF02769 AIR synthase related protein, C-terminal domain CL55_RS02570 PF00586 AIR synthase related protein, N-terminal domain CL55_RS02585 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS02590 PF00989 PAS fold CL55_RS02590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS02590 PF00512 His Kinase A (phospho-acceptor) domain CL55_RS02605 PF11741 AMIN domain CL55_RS02605 PF01520 N-acetylmuramoyl-L-alanine amidase CL55_RS02610 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CL55_RS02615 PF08331 Domain of unknown function (DUF1730) CL55_RS02630 PF02754 Cysteine-rich domain CL55_RS02630 PF13183 4Fe-4S dicluster domain CL55_RS02635 PF00392 Bacterial regulatory proteins, gntR family CL55_RS02635 PF07729 FCD domain CL55_RS02640 PF00266 Aminotransferase class-V CL55_RS02645 PF03928 Haem-degrading CL55_RS02650 PF00271 Helicase conserved C-terminal domain CL55_RS02650 PF00270 DEAD/DEAH box helicase CL55_RS02655 PF00749 tRNA synthetases class I (E and Q), catalytic domain CL55_RS02660 PF14579 Helix-hairpin-helix motif CL55_RS02660 PF02811 PHP domain CL55_RS02660 PF01336 OB-fold nucleic acid binding domain CL55_RS02660 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CL55_RS02660 PF07733 Bacterial DNA polymerase III alpha NTPase domain CL55_RS02670 PF00535 Glycosyl transferase family 2 CL55_RS02675 PF00535 Glycosyl transferase family 2 CL55_RS02680 PF00005 ABC transporter CL55_RS02680 PF00664 ABC transporter transmembrane region CL55_RS02685 PF00575 S1 RNA binding domain CL55_RS02685 PF10150 Ribonuclease E/G family CL55_RS02690 PF02545 Maf-like protein CL55_RS02695 PF02590 Predicted SPOUT methyltransferase CL55_RS02705 PF01467 Cytidylyltransferase-like CL55_RS02710 PF01218 Coproporphyrinogen III oxidase CL55_RS02715 PF02843 Phosphoribosylglycinamide synthetase, C domain CL55_RS02715 PF02844 Phosphoribosylglycinamide synthetase, N domain CL55_RS02715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CL55_RS02720 PF01709 Transcriptional regulator CL55_RS02730 PF03466 LysR substrate binding domain CL55_RS02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CL55_RS02745 PF00883 Cytosol aminopeptidase family, catalytic domain CL55_RS02745 PF02789 Cytosol aminopeptidase family, N-terminal domain CL55_RS02755 PF01790 Prolipoprotein diacylglyceryl transferase CL55_RS02765 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS02770 PF13193 AMP-binding enzyme C-terminal domain CL55_RS02770 PF00501 AMP-binding enzyme CL55_RS02775 PF01925 Sulfite exporter TauE/SafE CL55_RS02790 PF00005 ABC transporter CL55_RS02795 PF01032 FecCD transport family CL55_RS02805 PF00593 TonB dependent receptor CL55_RS02805 PF07715 TonB-dependent Receptor Plug Domain CL55_RS02815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL55_RS02815 PF00205 Thiamine pyrophosphate enzyme, central domain CL55_RS02815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL55_RS02820 PF02515 CoA-transferase family III CL55_RS02825 PF02515 CoA-transferase family III CL55_RS02830 PF02911 Formyl transferase, C-terminal domain CL55_RS02830 PF00551 Formyl transferase CL55_RS02835 PF02569 Pantoate-beta-alanine ligase CL55_RS02840 PF02616 Segregation and condensation protein ScpA CL55_RS02850 PF09334 tRNA synthetases class I (M) CL55_RS02850 PF01588 Putative tRNA binding domain CL55_RS02855 PF02634 FdhD/NarQ family CL55_RS02860 PF00692 dUTPase CL55_RS02865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CL55_RS02865 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CL55_RS02865 PF01276 Orn/Lys/Arg decarboxylase, major domain CL55_RS02880 PF00206 Lyase CL55_RS02880 PF14698 Argininosuccinate lyase C-terminal CL55_RS02885 PF03900 Porphobilinogen deaminase, C-terminal domain CL55_RS02885 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CL55_RS02890 PF02602 Uroporphyrinogen-III synthase HemD CL55_RS02895 PF04345 Chorismate lyase CL55_RS02900 PF00270 DEAD/DEAH box helicase CL55_RS02900 PF00271 Helicase conserved C-terminal domain CL55_RS02905 PF01810 LysE type translocator CL55_RS02910 PF00171 Aldehyde dehydrogenase family CL55_RS02915 PF01625 Peptide methionine sulfoxide reductase CL55_RS02920 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CL55_RS02920 PF01243 Pyridoxamine 5'-phosphate oxidase CL55_RS02925 PF00899 ThiF family CL55_RS02930 PF00324 Amino acid permease CL55_RS02935 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CL55_RS02935 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CL55_RS02940 PF01169 Uncharacterized protein family UPF0016 CL55_RS02945 PF11940 Domain of unknown function (DUF3458) Ig-like fold CL55_RS02945 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CL55_RS02945 PF01433 Peptidase family M1 domain CL55_RS02950 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CL55_RS02955 PF02875 Mur ligase family, glutamate ligase domain CL55_RS02955 PF08443 RimK-like ATP-grasp domain CL55_RS02955 PF08245 Mur ligase middle domain CL55_RS02960 PF08443 RimK-like ATP-grasp domain CL55_RS02960 PF02875 Mur ligase family, glutamate ligase domain CL55_RS02960 PF08245 Mur ligase middle domain CL55_RS02965 PF00664 ABC transporter transmembrane region CL55_RS02965 PF00005 ABC transporter CL55_RS02975 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS02985 PF01970 Tripartite tricarboxylate transporter TctA family CL55_RS02995 PF07715 TonB-dependent Receptor Plug Domain CL55_RS02995 PF00593 TonB dependent receptor CL55_RS03015 PF00920 Dehydratase family CL55_RS03020 PF00196 Bacterial regulatory proteins, luxR family CL55_RS03020 PF00072 Response regulator receiver domain CL55_RS03030 PF00543 Nitrogen regulatory protein P-II CL55_RS03035 PF00795 Carbon-nitrogen hydrolase CL55_RS03035 PF02540 NAD synthase CL55_RS03040 PF00719 Inorganic pyrophosphatase CL55_RS03055 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS03060 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CL55_RS03060 PF17854 FtsK alpha domain CL55_RS03060 PF09397 Ftsk gamma domain CL55_RS03060 PF01580 FtsK/SpoIIIE family CL55_RS03065 PF03548 Outer membrane lipoprotein carrier protein LolA CL55_RS03070 PF02403 Seryl-tRNA synthetase N-terminal domain CL55_RS03070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CL55_RS03085 PF00080 Copper/zinc superoxide dismutase (SODC) CL55_RS03095 PF02325 YGGT family CL55_RS03110 PF01227 GTP cyclohydrolase I CL55_RS03115 PF00255 Glutathione peroxidase CL55_RS03120 PF08402 TOBE domain CL55_RS03120 PF00005 ABC transporter CL55_RS03125 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS03155 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CL55_RS03170 PF04102 SlyX CL55_RS03180 PF00296 Luciferase-like monooxygenase CL55_RS03190 PF07152 YaeQ protein CL55_RS03200 PF16326 ABC transporter C-terminal domain CL55_RS03200 PF12848 ABC transporter CL55_RS03200 PF00005 ABC transporter CL55_RS03205 PF02230 Phospholipase/Carboxylesterase CL55_RS03215 PF01556 DnaJ C terminal domain CL55_RS03215 PF00226 DnaJ domain CL55_RS03220 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CL55_RS03220 PF08666 SAF domain CL55_RS03225 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL55_RS03225 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL55_RS03230 PF02678 Pirin CL55_RS03230 PF17954 Quercetinase C-terminal cupin domain CL55_RS03245 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS03245 PF10518 TAT (twin-arginine translocation) pathway signal sequence CL55_RS03245 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CL55_RS03270 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS03275 PF03328 HpcH/HpaI aldolase/citrate lyase family CL55_RS03300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CL55_RS03305 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS03310 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS03310 PF12911 N-terminal TM domain of oligopeptide transport permease C CL55_RS03315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CL55_RS03315 PF00005 ABC transporter CL55_RS03320 PF00877 NlpC/P60 family CL55_RS03325 PF01734 Patatin-like phospholipase CL55_RS03330 PF04079 Segregation and condensation complex subunit ScpB CL55_RS03335 PF00849 RNA pseudouridylate synthase CL55_RS03335 PF01479 S4 domain CL55_RS03340 PF02576 RimP N-terminal domain CL55_RS03340 PF17384 RimP C-terminal SH3 domain CL55_RS03345 PF13184 NusA-like KH domain CL55_RS03345 PF08529 NusA N-terminal domain CL55_RS03350 PF00009 Elongation factor Tu GTP binding domain CL55_RS03350 PF11987 Translation-initiation factor 2 CL55_RS03350 PF08364 Bacterial translation initiation factor IF-2 associated region CL55_RS03350 PF04760 Translation initiation factor IF-2, N-terminal region CL55_RS03355 PF02033 Ribosome-binding factor A CL55_RS03360 PF09157 Pseudouridine synthase II TruB, C-terminal CL55_RS03360 PF16198 tRNA pseudouridylate synthase B C-terminal domain CL55_RS03360 PF01509 TruB family pseudouridylate synthase (N terminal domain) CL55_RS03365 PF00009 Elongation factor Tu GTP binding domain CL55_RS03365 PF00679 Elongation factor G C-terminus CL55_RS03365 PF03144 Elongation factor Tu domain 2 CL55_RS03370 PF17674 HHH domain CL55_RS03370 PF00575 S1 RNA binding domain CL55_RS03370 PF16921 Tex protein YqgF-like domain CL55_RS03370 PF09371 Tex-like protein N-terminal domain CL55_RS03380 PF01850 PIN domain CL55_RS03390 PF01022 Bacterial regulatory protein, arsR family CL55_RS03395 PF01451 Low molecular weight phosphotyrosine protein phosphatase CL55_RS03400 PF01758 Sodium Bile acid symporter family CL55_RS03405 PF03358 NADPH-dependent FMN reductase CL55_RS03415 PF00582 Universal stress protein family CL55_RS03420 PF01925 Sulfite exporter TauE/SafE CL55_RS03430 PF01207 Dihydrouridine synthase (Dus) CL55_RS03440 PF03781 Sulfatase-modifying factor enzyme 1 CL55_RS03445 PF14493 Helix-turn-helix domain CL55_RS03445 PF05970 PIF1-like helicase CL55_RS03450 PF12441 CopG antitoxin of type II toxin-antitoxin system CL55_RS03470 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS03475 PF00202 Aminotransferase class-III CL55_RS03485 PF03788 LrgA family CL55_RS03490 PF00111 2Fe-2S iron-sulfur cluster binding domain CL55_RS03490 PF01799 [2Fe-2S] binding domain CL55_RS03495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CL55_RS03495 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CL55_RS03495 PF00034 Cytochrome c CL55_RS03520 PF00551 Formyl transferase CL55_RS03535 PF01804 Penicillin amidase CL55_RS03555 PF02472 Biopolymer transport protein ExbD/TolR CL55_RS03560 PF01618 MotA/TolQ/ExbB proton channel family CL55_RS03570 PF01177 Asp/Glu/Hydantoin racemase CL55_RS03580 PF16177 Acetyl-coenzyme A synthetase N-terminus CL55_RS03580 PF13193 AMP-binding enzyme C-terminal domain CL55_RS03580 PF00501 AMP-binding enzyme CL55_RS03610 PF10531 SLBB domain CL55_RS03610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CL55_RS03610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CL55_RS03615 PF01568 Molydopterin dinucleotide binding domain CL55_RS03615 PF00384 Molybdopterin oxidoreductase CL55_RS03615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CL55_RS03620 PF00890 FAD binding domain CL55_RS03620 PF02910 Fumarate reductase flavoprotein C-term CL55_RS03625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CL55_RS03625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CL55_RS03630 PF02445 Quinolinate synthetase A protein CL55_RS03635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CL55_RS03635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CL55_RS03635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CL55_RS03635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CL55_RS03640 PF00342 Phosphoglucose isomerase CL55_RS03645 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CL55_RS03645 PF01266 FAD dependent oxidoreductase CL55_RS03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS03665 PF09086 Domain of unknown function (DUF1924) CL55_RS03675 PF01292 Prokaryotic cytochrome b561 CL55_RS03680 PF00753 Metallo-beta-lactamase superfamily CL55_RS03680 PF14864 Alkyl sulfatase C-terminal CL55_RS03680 PF14863 Alkyl sulfatase dimerisation CL55_RS03685 PF02515 CoA-transferase family III CL55_RS03690 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS03695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL55_RS03695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL55_RS03695 PF00378 Enoyl-CoA hydratase/isomerase CL55_RS03700 PF04055 Radical SAM superfamily CL55_RS03700 PF06969 HemN C-terminal domain CL55_RS03705 PF01725 Ham1 family CL55_RS03710 PF01138 3' exoribonuclease family, domain 1 CL55_RS03710 PF03725 3' exoribonuclease family, domain 2 CL55_RS03715 PF03755 YicC-like family, N-terminal region CL55_RS03715 PF08340 Domain of unknown function (DUF1732) CL55_RS03720 PF00625 Guanylate kinase CL55_RS03725 PF01192 RNA polymerase Rpb6 CL55_RS03730 PF02824 TGS domain CL55_RS03730 PF04607 Region found in RelA / SpoT proteins CL55_RS03730 PF13291 ACT domain CL55_RS03735 PF01272 Transcription elongation factor, GreA/GreB, C-term CL55_RS03735 PF03449 Transcription elongation factor, N-terminal CL55_RS03745 PF02405 Permease MlaE CL55_RS03750 PF00005 ABC transporter CL55_RS03755 PF02470 MlaD protein CL55_RS03765 PF00106 short chain dehydrogenase CL55_RS03795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL55_RS03795 PF00205 Thiamine pyrophosphate enzyme, central domain CL55_RS03795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL55_RS03800 PF10369 Small subunit of acetolactate synthase CL55_RS03805 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CL55_RS03805 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CL55_RS03810 PF02666 Phosphatidylserine decarboxylase CL55_RS03815 PF01066 CDP-alcohol phosphatidyltransferase CL55_RS03820 PF00682 HMGL-like CL55_RS03820 PF08502 LeuA allosteric (dimerisation) domain CL55_RS03835 PF00312 Ribosomal protein S15 CL55_RS03840 PF00013 KH domain CL55_RS03840 PF01138 3' exoribonuclease family, domain 1 CL55_RS03840 PF00575 S1 RNA binding domain CL55_RS03840 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CL55_RS03840 PF03725 3' exoribonuclease family, domain 2 CL55_RS03845 PF00550 Phosphopantetheine attachment site CL55_RS03845 PF14765 Polyketide synthase dehydratase CL55_RS03845 PF02801 Beta-ketoacyl synthase, C-terminal domain CL55_RS03845 PF00698 Acyl transferase domain CL55_RS03845 PF08240 Alcohol dehydrogenase GroES-like domain CL55_RS03845 PF00109 Beta-ketoacyl synthase, N-terminal domain CL55_RS03845 PF16197 Ketoacyl-synthetase C-terminal extension CL55_RS03845 PF00107 Zinc-binding dehydrogenase CL55_RS03845 PF08659 KR domain CL55_RS03850 PF00121 Triosephosphate isomerase CL55_RS03855 PF03840 Preprotein translocase SecG subunit CL55_RS03865 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CL55_RS03870 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CL55_RS03875 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CL55_RS03880 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CL55_RS03890 PF10531 SLBB domain CL55_RS03890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CL55_RS03890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CL55_RS03895 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CL55_RS03895 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CL55_RS03895 PF00384 Molybdopterin oxidoreductase CL55_RS03900 PF00146 NADH dehydrogenase CL55_RS03905 PF12838 4Fe-4S dicluster domain CL55_RS03910 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CL55_RS03915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CL55_RS03920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CL55_RS03920 PF00361 Proton-conducting membrane transporter CL55_RS03925 PF00361 Proton-conducting membrane transporter CL55_RS03925 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CL55_RS03930 PF00361 Proton-conducting membrane transporter CL55_RS03935 PF00293 NUDIX domain CL55_RS03945 PF00171 Aldehyde dehydrogenase family CL55_RS03950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CL55_RS03965 PF00929 Exonuclease CL55_RS03970 PF00873 AcrB/AcrD/AcrF family CL55_RS03975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CL55_RS03980 PF00075 RNase H CL55_RS03985 PF13847 Methyltransferase domain CL55_RS03990 PF00753 Metallo-beta-lactamase superfamily CL55_RS03990 PF16123 Hydroxyacylglutathione hydrolase C-terminus CL55_RS03995 PF01476 LysM domain CL55_RS03995 PF01464 Transglycosylase SLT domain CL55_RS04000 PF00501 AMP-binding enzyme CL55_RS04000 PF16177 Acetyl-coenzyme A synthetase N-terminus CL55_RS04000 PF13193 AMP-binding enzyme C-terminal domain CL55_RS04005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CL55_RS04005 PF00117 Glutamine amidotransferase class-I CL55_RS04010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CL55_RS04010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CL55_RS04010 PF02142 MGS-like domain CL55_RS04015 PF01272 Transcription elongation factor, GreA/GreB, C-term CL55_RS04015 PF03449 Transcription elongation factor, N-terminal CL55_RS04030 PF01728 FtsJ-like methyltransferase CL55_RS04035 PF00004 ATPase family associated with various cellular activities (AAA) CL55_RS04035 PF06480 FtsH Extracellular CL55_RS04035 PF01434 Peptidase family M41 CL55_RS04035 PF17862 AAA+ lid domain CL55_RS04040 PF00809 Pterin binding enzyme CL55_RS04045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CL55_RS04045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CL55_RS04045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CL55_RS04045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CL55_RS04050 PF12849 PBP superfamily domain CL55_RS04055 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS04060 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS04065 PF00005 ABC transporter CL55_RS04070 PF01895 PhoU domain CL55_RS04075 PF00072 Response regulator receiver domain CL55_RS04075 PF00486 Transcriptional regulatory protein, C terminal CL55_RS04080 PF00512 His Kinase A (phospho-acceptor) domain CL55_RS04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS04080 PF00989 PAS fold CL55_RS04080 PF11808 Phosphate regulon sensor protein PhoR CL55_RS04090 PF01544 CorA-like Mg2+ transporter protein CL55_RS04110 PF00245 Alkaline phosphatase CL55_RS04130 PF02541 Ppx/GppA phosphatase family CL55_RS04140 PF01219 Prokaryotic diacylglycerol kinase CL55_RS04145 PF13439 Glycosyltransferase Family 4 CL55_RS04145 PF00534 Glycosyl transferases group 1 CL55_RS04155 PF01553 Acyltransferase CL55_RS04160 PF03976 Polyphosphate kinase 2 (PPK2) CL55_RS04180 PF00593 TonB dependent receptor CL55_RS04180 PF07715 TonB-dependent Receptor Plug Domain CL55_RS04220 PF13392 HNH endonuclease CL55_RS04260 PF00589 Phage integrase family CL55_RS04300 PF02469 Fasciclin domain CL55_RS04330 PF00753 Metallo-beta-lactamase superfamily CL55_RS04330 PF10996 Beta-Casp domain CL55_RS04330 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CL55_RS04335 PF07977 FabA-like domain CL55_RS04340 PF02311 AraC-like ligand binding domain CL55_RS04340 PF12833 Helix-turn-helix domain CL55_RS04345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CL55_RS04345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL55_RS04350 PF00941 FAD binding domain in molybdopterin dehydrogenase CL55_RS04350 PF03450 CO dehydrogenase flavoprotein C-terminal domain CL55_RS04355 PF01799 [2Fe-2S] binding domain CL55_RS04355 PF00111 2Fe-2S iron-sulfur cluster binding domain CL55_RS04360 PF13193 AMP-binding enzyme C-terminal domain CL55_RS04360 PF00501 AMP-binding enzyme CL55_RS04365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL55_RS04365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL55_RS04365 PF00378 Enoyl-CoA hydratase/isomerase CL55_RS04375 PF02653 Branched-chain amino acid transport system / permease component CL55_RS04385 PF12399 Branched-chain amino acid ATP-binding cassette transporter CL55_RS04385 PF00005 ABC transporter CL55_RS04390 PF00005 ABC transporter CL55_RS04420 PF13847 Methyltransferase domain CL55_RS04425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CL55_RS04425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CL55_RS04430 PF00202 Aminotransferase class-III CL55_RS04435 PF07859 alpha/beta hydrolase fold CL55_RS04450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS04450 PF00072 Response regulator receiver domain CL55_RS04450 PF13426 PAS domain CL55_RS04470 PF02666 Phosphatidylserine decarboxylase CL55_RS04475 PF02801 Beta-ketoacyl synthase, C-terminal domain CL55_RS04475 PF13193 AMP-binding enzyme C-terminal domain CL55_RS04475 PF00501 AMP-binding enzyme CL55_RS04475 PF00109 Beta-ketoacyl synthase, N-terminal domain CL55_RS04475 PF00202 Aminotransferase class-III CL55_RS04475 PF00550 Phosphopantetheine attachment site CL55_RS04475 PF00668 Condensation domain CL55_RS04475 PF16197 Ketoacyl-synthetase C-terminal extension CL55_RS04485 PF13439 Glycosyltransferase Family 4 CL55_RS04485 PF00534 Glycosyl transferases group 1 CL55_RS04500 PF00300 Histidine phosphatase superfamily (branch 1) CL55_RS04520 PF00216 Bacterial DNA-binding protein CL55_RS04545 PF00483 Nucleotidyl transferase CL55_RS04550 PF16363 GDP-mannose 4,6 dehydratase CL55_RS04555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CL55_RS04565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL55_RS04565 PF00205 Thiamine pyrophosphate enzyme, central domain CL55_RS04565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL55_RS04575 PF00293 NUDIX domain CL55_RS04590 PF02719 Polysaccharide biosynthesis protein CL55_RS04595 PF04055 Radical SAM superfamily CL55_RS04595 PF06463 Molybdenum Cofactor Synthesis C CL55_RS04610 PF00875 DNA photolyase CL55_RS04610 PF03441 FAD binding domain of DNA photolyase CL55_RS04630 PF00497 Bacterial extracellular solute-binding proteins, family 3 CL55_RS04635 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS04640 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS04645 PF00005 ABC transporter CL55_RS04660 PF03976 Polyphosphate kinase 2 (PPK2) CL55_RS04680 PF03358 NADPH-dependent FMN reductase CL55_RS04685 PF03631 Virulence factor BrkB CL55_RS04695 PF01264 Chorismate synthase CL55_RS04710 PF01144 Coenzyme A transferase CL55_RS04715 PF01144 Coenzyme A transferase CL55_RS04740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CL55_RS04740 PF03129 Anticodon binding domain CL55_RS04740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CL55_RS04740 PF02824 TGS domain CL55_RS04745 PF05198 Translation initiation factor IF-3, N-terminal domain CL55_RS04745 PF00707 Translation initiation factor IF-3, C-terminal domain CL55_RS04750 PF01632 Ribosomal protein L35 CL55_RS04755 PF00453 Ribosomal protein L20 CL55_RS04760 PF01409 tRNA synthetases class II core domain (F) CL55_RS04760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CL55_RS04765 PF03484 tRNA synthetase B5 domain CL55_RS04765 PF01588 Putative tRNA binding domain CL55_RS04765 PF03147 Ferredoxin-fold anticodon binding domain CL55_RS04765 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CL55_RS04765 PF03483 B3/4 domain CL55_RS04770 PF00216 Bacterial DNA-binding protein CL55_RS04790 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CL55_RS04810 PF00529 HlyD membrane-fusion protein of T1SS CL55_RS04810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CL55_RS04815 PF00873 AcrB/AcrD/AcrF family CL55_RS04835 PF00239 Resolvase, N terminal domain CL55_RS04835 PF02796 Helix-turn-helix domain of resolvase CL55_RS04860 PF00816 H-NS histone family CL55_RS04870 PF02779 Transketolase, pyrimidine binding domain CL55_RS04870 PF00676 Dehydrogenase E1 component CL55_RS04870 PF16078 2-oxoglutarate dehydrogenase N-terminus CL55_RS04870 PF16870 2-oxoglutarate dehydrogenase C-terminal CL55_RS04875 PF00364 Biotin-requiring enzyme CL55_RS04875 PF02817 e3 binding domain CL55_RS04875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL55_RS04880 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS04880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL55_RS04885 PF03969 AFG1-like ATPase CL55_RS04890 PF02811 PHP domain CL55_RS04895 PF00579 tRNA synthetases class I (W and Y) CL55_RS04905 PF00701 Dihydrodipicolinate synthetase family CL55_RS04910 PF06804 NlpB/DapX lipoprotein CL55_RS04920 PF08007 Cupin superfamily protein CL55_RS04925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CL55_RS04930 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS04935 PF00588 SpoU rRNA Methylase family CL55_RS04940 PF00459 Inositol monophosphatase family CL55_RS04945 PF00149 Calcineurin-like phosphoesterase CL55_RS04950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CL55_RS04960 PF01406 tRNA synthetases class I (C) catalytic domain CL55_RS04960 PF09190 DALR domain CL55_RS04970 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CL55_RS04975 PF09179 TilS substrate binding domain CL55_RS04975 PF01171 PP-loop family CL55_RS04975 PF11734 TilS substrate C-terminal domain CL55_RS04980 PF01842 ACT domain CL55_RS04980 PF13840 ACT domain CL55_RS04980 PF00696 Amino acid kinase family CL55_RS04990 PF01425 Amidase CL55_RS05025 PF00156 Phosphoribosyl transferase domain CL55_RS05030 PF01048 Phosphorylase superfamily CL55_RS05050 PF16325 Peptidase family U32 C-terminal domain CL55_RS05050 PF01136 Peptidase family U32 CL55_RS05070 PF08543 Phosphomethylpyrimidine kinase CL55_RS05075 PF02581 Thiamine monophosphate synthase CL55_RS05080 PF05690 Thiazole biosynthesis protein ThiG CL55_RS05090 PF01266 FAD dependent oxidoreductase CL55_RS05095 PF01964 Radical SAM ThiC family CL55_RS05095 PF13667 ThiC-associated domain CL55_RS05115 PF02515 CoA-transferase family III CL55_RS05120 PF01751 Toprim domain CL55_RS05120 PF00204 DNA gyrase B CL55_RS05120 PF00986 DNA gyrase B subunit, carboxyl terminus CL55_RS05120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS05125 PF00521 DNA gyrase/topoisomerase IV, subunit A CL55_RS05130 PF02625 XdhC and CoxI family CL55_RS05130 PF13478 XdhC Rossmann domain CL55_RS05135 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS05135 PF12804 MobA-like NTP transferase domain CL55_RS05150 PF01434 Peptidase family M41 CL55_RS05150 PF17862 AAA+ lid domain CL55_RS05150 PF00004 ATPase family associated with various cellular activities (AAA) CL55_RS05160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CL55_RS05165 PF07729 FCD domain CL55_RS05165 PF00392 Bacterial regulatory proteins, gntR family CL55_RS05170 PF02310 B12 binding domain CL55_RS05170 PF01642 Methylmalonyl-CoA mutase CL55_RS05180 PF01039 Carboxyl transferase domain CL55_RS05185 PF02785 Biotin carboxylase C-terminal domain CL55_RS05185 PF18140 Propionyl-coenzyme A carboxylase BT domain CL55_RS05185 PF00364 Biotin-requiring enzyme CL55_RS05185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CL55_RS05185 PF00289 Biotin carboxylase, N-terminal domain CL55_RS05200 PF00583 Acetyltransferase (GNAT) family CL55_RS05210 PF07690 Major Facilitator Superfamily CL55_RS05215 PF00842 Alanine racemase, C-terminal domain CL55_RS05215 PF01168 Alanine racemase, N-terminal domain CL55_RS05220 PF13525 Outer membrane lipoprotein CL55_RS05225 PF00849 RNA pseudouridylate synthase CL55_RS05225 PF01479 S4 domain CL55_RS05230 PF02578 Multi-copper polyphenol oxidoreductase laccase CL55_RS05235 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CL55_RS05240 PF00106 short chain dehydrogenase CL55_RS05245 PF05233 PHB accumulation regulatory domain CL55_RS05245 PF07879 PHB/PHA accumulation regulator DNA-binding domain CL55_RS05250 PF00919 Uncharacterized protein family UPF0004 CL55_RS05250 PF04055 Radical SAM superfamily CL55_RS05250 PF18693 TRAM domain CL55_RS05255 PF02803 Thiolase, C-terminal domain CL55_RS05255 PF00108 Thiolase, N-terminal domain CL55_RS05265 PF00270 DEAD/DEAH box helicase CL55_RS05265 PF02559 CarD-like/TRCF domain CL55_RS05265 PF17757 UvrB interaction domain CL55_RS05265 PF03461 TRCF domain CL55_RS05265 PF00271 Helicase conserved C-terminal domain CL55_RS05270 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CL55_RS05275 PF02542 YgbB family CL55_RS05285 PF05698 Bacterial trigger factor protein (TF) C-terminus CL55_RS05285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CL55_RS05285 PF05697 Bacterial trigger factor protein (TF) CL55_RS05290 PF00574 Clp protease CL55_RS05295 PF07724 AAA domain (Cdc48 subfamily) CL55_RS05295 PF06689 ClpX C4-type zinc finger CL55_RS05295 PF10431 C-terminal, D2-small domain, of ClpB protein CL55_RS05300 PF02190 ATP-dependent protease La (LON) substrate-binding domain CL55_RS05300 PF05362 Lon protease (S16) C-terminal proteolytic domain CL55_RS05300 PF00004 ATPase family associated with various cellular activities (AAA) CL55_RS05315 PF13472 GDSL-like Lipase/Acylhydrolase family CL55_RS05320 PF00005 ABC transporter CL55_RS05325 PF02769 AIR synthase related protein, C-terminal domain CL55_RS05325 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CL55_RS05325 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CL55_RS05335 PF00330 Aconitase family (aconitate hydratase) CL55_RS05335 PF06434 Aconitate hydratase 2 N-terminus CL55_RS05335 PF11791 Aconitate B N-terminal domain CL55_RS05340 PF00117 Glutamine amidotransferase class-I CL55_RS05340 PF06418 CTP synthase N-terminus CL55_RS05345 PF00793 DAHP synthetase I family CL55_RS05350 PF03952 Enolase, N-terminal domain CL55_RS05350 PF00113 Enolase, C-terminal TIM barrel domain CL55_RS05355 PF04977 Septum formation initiator CL55_RS05360 PF01430 Hsp33 protein CL55_RS05365 PF00749 tRNA synthetases class I (E and Q), catalytic domain CL55_RS05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CL55_RS05395 PF03466 LysR substrate binding domain CL55_RS05400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL55_RS05400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL55_RS05400 PF00205 Thiamine pyrophosphate enzyme, central domain CL55_RS05405 PF01261 Xylose isomerase-like TIM barrel CL55_RS05410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CL55_RS05410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CL55_RS05435 PF01026 TatD related DNase CL55_RS05440 PF09115 DNA polymerase III, delta subunit, C terminal CL55_RS05445 PF02223 Thymidylate kinase CL55_RS05450 PF02618 YceG-like family CL55_RS05455 PF01571 Aminomethyltransferase folate-binding domain CL55_RS05470 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CL55_RS05475 PF01641 SelR domain CL55_RS05480 PF04279 Intracellular septation protein A CL55_RS05495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CL55_RS05510 PF12848 ABC transporter CL55_RS05510 PF00005 ABC transporter CL55_RS05520 PF02770 Acyl-CoA dehydrogenase, middle domain CL55_RS05520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CL55_RS05520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CL55_RS05525 PF00581 Rhodanese-like domain CL55_RS05535 PF00753 Metallo-beta-lactamase superfamily CL55_RS05535 PF04273 Putative phosphatase (DUF442) CL55_RS05545 PF04143 Sulphur transport CL55_RS05560 PF00753 Metallo-beta-lactamase superfamily CL55_RS05570 PF02872 5'-nucleotidase, C-terminal domain CL55_RS05570 PF00149 Calcineurin-like phosphoesterase CL55_RS05595 PF00034 Cytochrome c CL55_RS05600 PF00174 Oxidoreductase molybdopterin binding domain CL55_RS05605 PF01022 Bacterial regulatory protein, arsR family CL55_RS05610 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS05615 PF00005 ABC transporter CL55_RS05615 PF12857 TOBE-like domain CL55_RS05615 PF17850 CysA C-terminal regulatory domain CL55_RS05620 PF01355 High potential iron-sulfur protein CL55_RS05630 PF01053 Cys/Met metabolism PLP-dependent enzyme CL55_RS05635 PF00156 Phosphoribosyl transferase domain CL55_RS05650 PF02875 Mur ligase family, glutamate ligase domain CL55_RS05650 PF08245 Mur ligase middle domain CL55_RS05655 PF01039 Carboxyl transferase domain CL55_RS05655 PF17848 Acetyl-coA carboxylase zinc finger domain CL55_RS05660 PF00290 Tryptophan synthase alpha chain CL55_RS05665 PF00291 Pyridoxal-phosphate dependent enzyme CL55_RS05670 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CL55_RS05675 PF01416 tRNA pseudouridine synthase CL55_RS05685 PF02774 Semialdehyde dehydrogenase, dimerisation domain CL55_RS05685 PF01118 Semialdehyde dehydrogenase, NAD binding domain CL55_RS05690 PF00180 Isocitrate/isopropylmalate dehydrogenase CL55_RS05695 PF00694 Aconitase C-terminal domain CL55_RS05705 PF00330 Aconitase family (aconitate hydratase) CL55_RS05710 PF00285 Citrate synthase, C-terminal domain CL55_RS05715 PF03937 Flavinator of succinate dehydrogenase CL55_RS05720 PF13085 2Fe-2S iron-sulfur cluster binding domain CL55_RS05725 PF02910 Fumarate reductase flavoprotein C-term CL55_RS05725 PF00890 FAD binding domain CL55_RS05730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CL55_RS05735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CL55_RS05740 PF07702 UTRA domain CL55_RS05740 PF00392 Bacterial regulatory proteins, gntR family CL55_RS05745 PF00056 lactate/malate dehydrogenase, NAD binding domain CL55_RS05745 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CL55_RS05760 PF03883 Peroxide stress protein YaaA CL55_RS05765 PF00155 Aminotransferase class I and II CL55_RS05770 PF02798 Glutathione S-transferase, N-terminal domain CL55_RS05770 PF00043 Glutathione S-transferase, C-terminal domain CL55_RS05775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL55_RS05775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL55_RS05785 PF00004 ATPase family associated with various cellular activities (AAA) CL55_RS05785 PF12002 MgsA AAA+ ATPase C terminal CL55_RS05785 PF16193 AAA C-terminal domain CL55_RS05795 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CL55_RS05800 PF04715 Anthranilate synthase component I, N terminal region CL55_RS05800 PF00425 chorismate binding enzyme CL55_RS05810 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CL55_RS05815 PF04376 Arginine-tRNA-protein transferase, N terminus CL55_RS05815 PF04377 Arginine-tRNA-protein transferase, C terminus CL55_RS05820 PF01180 Dihydroorotate dehydrogenase CL55_RS05825 PF01614 Bacterial transcriptional regulator CL55_RS05825 PF09339 IclR helix-turn-helix domain CL55_RS05830 PF00768 D-alanyl-D-alanine carboxypeptidase CL55_RS05840 PF09361 Phasin protein CL55_RS05845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS05845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL55_RS05850 PF00364 Biotin-requiring enzyme CL55_RS05850 PF02817 e3 binding domain CL55_RS05850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL55_RS05855 PF17831 Pyruvate dehydrogenase E1 component middle domain CL55_RS05855 PF00456 Transketolase, thiamine diphosphate binding domain CL55_RS05860 PF00989 PAS fold CL55_RS05860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS05860 PF00512 His Kinase A (phospho-acceptor) domain CL55_RS05865 PF00072 Response regulator receiver domain CL55_RS05865 PF00196 Bacterial regulatory proteins, luxR family CL55_RS05870 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CL55_RS05870 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL55_RS05875 PF01432 Peptidase family M3 CL55_RS05885 PF13520 Amino acid permease CL55_RS05890 PF03372 Endonuclease/Exonuclease/phosphatase family CL55_RS05895 PF00158 Sigma-54 interaction domain CL55_RS05895 PF02954 Bacterial regulatory protein, Fis family CL55_RS05895 PF00072 Response regulator receiver domain CL55_RS05900 PF00989 PAS fold CL55_RS05900 PF00512 His Kinase A (phospho-acceptor) domain CL55_RS05900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS05905 PF00120 Glutamine synthetase, catalytic domain CL55_RS05905 PF03951 Glutamine synthetase, beta-Grasp domain CL55_RS05910 PF00994 Probable molybdopterin binding domain CL55_RS05910 PF02464 Competence-damaged protein CL55_RS05935 PF04408 Helicase associated domain (HA2) CL55_RS05935 PF00271 Helicase conserved C-terminal domain CL55_RS05935 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CL55_RS05935 PF11898 Domain of unknown function (DUF3418) CL55_RS05935 PF00270 DEAD/DEAH box helicase CL55_RS05940 PF00696 Amino acid kinase family CL55_RS05940 PF00583 Acetyltransferase (GNAT) family CL55_RS05945 PF04362 Bacterial Fe(2+) trafficking CL55_RS05950 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CL55_RS05955 PF00923 Transaldolase/Fructose-6-phosphate aldolase CL55_RS05960 PF00085 Thioredoxin CL55_RS05965 PF08032 RNA 2'-O ribose methyltransferase substrate binding CL55_RS05965 PF00588 SpoU rRNA Methylase family CL55_RS05970 PF00773 RNB domain CL55_RS05970 PF08206 Ribonuclease B OB domain CL55_RS05970 PF08461 Ribonuclease R winged-helix domain CL55_RS05970 PF17876 Cold shock domain CL55_RS05970 PF00575 S1 RNA binding domain CL55_RS05980 PF01361 Tautomerase enzyme CL55_RS05985 PF00596 Class II Aldolase and Adducin N-terminal domain CL55_RS05995 PF01738 Dienelactone hydrolase family CL55_RS06005 PF01274 Malate synthase CL55_RS06010 PF00709 Adenylosuccinate synthetase CL55_RS06015 PF13393 Histidyl-tRNA synthetase CL55_RS06020 PF01145 SPFH domain / Band 7 family CL55_RS06025 PF01145 SPFH domain / Band 7 family CL55_RS06025 PF12221 Bacterial membrane protein N terminal CL55_RS06030 PF16360 GTP-binding GTPase Middle Region CL55_RS06030 PF13167 GTP-binding GTPase N-terminal CL55_RS06030 PF01926 50S ribosome-binding GTPase CL55_RS06035 PF17209 Hfq protein CL55_RS06040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CL55_RS06040 PF01926 50S ribosome-binding GTPase CL55_RS06045 PF13360 PQQ-like domain CL55_RS06055 PF13393 Histidyl-tRNA synthetase CL55_RS06055 PF03129 Anticodon binding domain CL55_RS06060 PF04551 GcpE protein CL55_RS06065 PF04055 Radical SAM superfamily CL55_RS06070 PF00334 Nucleoside diphosphate kinase CL55_RS06075 PF01027 Inhibitor of apoptosis-promoting Bax1 CL55_RS06080 PF01381 Helix-turn-helix CL55_RS06085 PF05958 tRNA (Uracil-5-)-methyltransferase CL55_RS06095 PF01551 Peptidase family M23 CL55_RS06095 PF01476 LysM domain CL55_RS06105 PF01975 Survival protein SurE CL55_RS06110 PF00873 AcrB/AcrD/AcrF family CL55_RS06135 PF13662 Toprim domain CL55_RS06135 PF02132 RecR protein CL55_RS06140 PF02575 YbaB/EbfC DNA-binding family CL55_RS06145 PF12170 DNA polymerase III tau subunit V interacting with alpha CL55_RS06145 PF12169 DNA polymerase III subunits gamma and tau domain III CL55_RS06145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CL55_RS06185 PF02824 TGS domain CL55_RS06185 PF13291 ACT domain CL55_RS06185 PF04607 Region found in RelA / SpoT proteins CL55_RS06225 PF00929 Exonuclease CL55_RS06230 PF03350 Uncharacterized protein family, UPF0114 CL55_RS06235 PF13438 Domain of unknown function (DUF4113) CL55_RS06235 PF11798 IMS family HHH motif CL55_RS06235 PF11799 impB/mucB/samB family C-terminal domain CL55_RS06235 PF00817 impB/mucB/samB family CL55_RS06240 PF00717 Peptidase S24-like CL55_RS06245 PF00180 Isocitrate/isopropylmalate dehydrogenase CL55_RS06250 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS06260 PF13361 UvrD-like helicase C-terminal domain CL55_RS06260 PF12705 PD-(D/E)XK nuclease superfamily CL55_RS06260 PF00580 UvrD/REP helicase N-terminal domain CL55_RS06270 PF00085 Thioredoxin CL55_RS06275 PF07497 Rho termination factor, RNA-binding domain CL55_RS06275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CL55_RS06275 PF07498 Rho termination factor, N-terminal domain CL55_RS06280 PF01197 Ribosomal protein L31 CL55_RS06290 PF01554 MatE CL55_RS06305 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS06310 PF02600 Disulfide bond formation protein DsbB CL55_RS06315 PF00378 Enoyl-CoA hydratase/isomerase CL55_RS06320 PF01557 Fumarylacetoacetate (FAA) hydrolase family CL55_RS06325 PF04193 PQ loop repeat CL55_RS06330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CL55_RS06335 PF12727 PBP superfamily domain CL55_RS06335 PF12728 Helix-turn-helix domain CL55_RS06340 PF12849 PBP superfamily domain CL55_RS06345 PF12849 PBP superfamily domain CL55_RS06350 PF03459 TOBE domain CL55_RS06360 PF13673 Acetyltransferase (GNAT) domain CL55_RS06370 PF05995 Cysteine dioxygenase type I CL55_RS06375 PF00270 DEAD/DEAH box helicase CL55_RS06375 PF00271 Helicase conserved C-terminal domain CL55_RS06380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CL55_RS06380 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CL55_RS06395 PF00581 Rhodanese-like domain CL55_RS06410 PF01152 Bacterial-like globin CL55_RS06435 PF03853 YjeF-related protein N-terminus CL55_RS06435 PF01256 Carbohydrate kinase CL55_RS06440 PF00892 EamA-like transporter family CL55_RS06450 PF00266 Aminotransferase class-V CL55_RS06460 PF01070 FMN-dependent dehydrogenase CL55_RS06470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CL55_RS06475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CL55_RS06475 PF03466 LysR substrate binding domain CL55_RS06480 PF00301 Rubredoxin CL55_RS06485 PF18113 Rubredoxin binding C-terminal domain CL55_RS06485 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS06495 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CL55_RS06495 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CL55_RS06500 PF00106 short chain dehydrogenase CL55_RS06505 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CL55_RS06505 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL55_RS06510 PF01799 [2Fe-2S] binding domain CL55_RS06510 PF00111 2Fe-2S iron-sulfur cluster binding domain CL55_RS06515 PF03450 CO dehydrogenase flavoprotein C-terminal domain CL55_RS06515 PF00941 FAD binding domain in molybdopterin dehydrogenase CL55_RS06545 PF02653 Branched-chain amino acid transport system / permease component CL55_RS06550 PF02653 Branched-chain amino acid transport system / permease component CL55_RS06550 PF11862 Domain of unknown function (DUF3382) CL55_RS06555 PF12399 Branched-chain amino acid ATP-binding cassette transporter CL55_RS06555 PF00005 ABC transporter CL55_RS06560 PF00005 ABC transporter CL55_RS06570 PF02770 Acyl-CoA dehydrogenase, middle domain CL55_RS06570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CL55_RS06570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CL55_RS06575 PF02515 CoA-transferase family III CL55_RS06580 PF13396 Phospholipase_D-nuclease N-terminal CL55_RS06580 PF13091 PLD-like domain CL55_RS06585 PF03372 Endonuclease/Exonuclease/phosphatase family CL55_RS06595 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS06600 PF00005 ABC transporter CL55_RS06600 PF09383 NIL domain CL55_RS06620 PF13247 4Fe-4S dicluster domain CL55_RS06625 PF00384 Molybdopterin oxidoreductase CL55_RS06625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CL55_RS06625 PF01568 Molydopterin dinucleotide binding domain CL55_RS06655 PF10609 NUBPL iron-transfer P-loop NTPase CL55_RS06665 PF00403 Heavy-metal-associated domain CL55_RS06695 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CL55_RS06715 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CL55_RS06715 PF02779 Transketolase, pyrimidine binding domain CL55_RS06715 PF02780 Transketolase, C-terminal domain CL55_RS06720 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CL55_RS06720 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CL55_RS06720 PF01488 Shikimate / quinate 5-dehydrogenase CL55_RS06735 PF03209 PUCC protein CL55_RS06740 PF01040 UbiA prenyltransferase family CL55_RS06745 PF02401 LytB protein CL55_RS06755 PF02915 Rubrerythrin CL55_RS06780 PF03209 PUCC protein CL55_RS06785 PF05175 Methyltransferase small domain CL55_RS06785 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus CL55_RS06790 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CL55_RS06795 PF11965 Domain of unknown function (DUF3479) CL55_RS06795 PF02514 CobN/Magnesium Chelatase CL55_RS06800 PF00148 Nitrogenase component 1 type Oxidoreductase CL55_RS06800 PF08369 Proto-chlorophyllide reductase 57 kD subunit CL55_RS06805 PF00148 Nitrogenase component 1 type Oxidoreductase CL55_RS06810 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) CL55_RS06820 PF13188 PAS domain CL55_RS06820 PF13426 PAS domain CL55_RS06820 PF02954 Bacterial regulatory protein, Fis family CL55_RS06830 PF01593 Flavin containing amine oxidoreductase CL55_RS06845 PF01593 Flavin containing amine oxidoreductase CL55_RS06850 PF02276 Photosynthetic reaction centre cytochrome C subunit CL55_RS06855 PF00124 Photosynthetic reaction centre protein CL55_RS06860 PF00124 Photosynthetic reaction centre protein CL55_RS06870 PF00556 Antenna complex alpha/beta subunit CL55_RS06875 PF08369 Proto-chlorophyllide reductase 57 kD subunit CL55_RS06875 PF00148 Nitrogenase component 1 type Oxidoreductase CL55_RS06880 PF00148 Nitrogenase component 1 type Oxidoreductase CL55_RS06885 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CL55_RS06890 PF08240 Alcohol dehydrogenase GroES-like domain CL55_RS06895 PF16864 Dimerisation domain CL55_RS06895 PF00891 O-methyltransferase domain CL55_RS06900 PF00348 Polyprenyl synthetase CL55_RS06905 PF00561 alpha/beta hydrolase fold CL55_RS06910 PF17863 AAA lid domain CL55_RS06915 PF17863 AAA lid domain CL55_RS06915 PF01078 Magnesium chelatase, subunit ChlI CL55_RS06920 PF00005 ABC transporter CL55_RS06920 PF00664 ABC transporter transmembrane region CL55_RS06935 PF17676 LD-carboxypeptidase C-terminal domain CL55_RS06935 PF02016 LD-carboxypeptidase N-terminal domain CL55_RS06940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CL55_RS06945 PF01242 6-pyruvoyl tetrahydropterin synthase CL55_RS06970 PF04305 Protein of unknown function (DUF455) CL55_RS06975 PF01645 Conserved region in glutamate synthase CL55_RS06980 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS06985 PF00528 Binding-protein-dependent transport system inner membrane component CL55_RS06990 PF00005 ABC transporter CL55_RS07015 PF00117 Glutamine amidotransferase class-I CL55_RS07015 PF02540 NAD synthase CL55_RS07015 PF00958 GMP synthase C terminal domain CL55_RS07020 PF00571 CBS domain CL55_RS07020 PF00478 IMP dehydrogenase / GMP reductase domain CL55_RS07025 PF03658 RnfH family Ubiquitin CL55_RS07030 PF03364 Polyketide cyclase / dehydrase and lipid transport CL55_RS07035 PF01668 SmpB protein CL55_RS07040 PF00391 PEP-utilising enzyme, mobile domain CL55_RS07040 PF02896 PEP-utilising enzyme, TIM barrel domain CL55_RS07040 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CL55_RS07045 PF03618 Kinase/pyrophosphorylase CL55_RS07050 PF08032 RNA 2'-O ribose methyltransferase substrate binding CL55_RS07050 PF00588 SpoU rRNA Methylase family CL55_RS07055 PF01351 Ribonuclease HII CL55_RS07060 PF02684 Lipid-A-disaccharide synthetase CL55_RS07065 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS07065 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CL55_RS07070 PF07977 FabA-like domain CL55_RS07075 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CL55_RS07075 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS07085 PF01103 Surface antigen CL55_RS07085 PF07244 Surface antigen variable number repeat CL55_RS07090 PF02163 Peptidase family M50 CL55_RS07090 PF17820 PDZ domain CL55_RS07095 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CL55_RS07095 PF13288 DXP reductoisomerase C-terminal domain CL55_RS07095 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CL55_RS07105 PF01255 Putative undecaprenyl diphosphate synthase CL55_RS07110 PF01765 Ribosome recycling factor CL55_RS07115 PF00696 Amino acid kinase family CL55_RS07120 PF00889 Elongation factor TS CL55_RS07125 PF00318 Ribosomal protein S2 CL55_RS07130 PF00557 Metallopeptidase family M24 CL55_RS07135 PF08335 GlnD PII-uridylyltransferase CL55_RS07135 PF01909 Nucleotidyltransferase domain CL55_RS07135 PF01966 HD domain CL55_RS07140 PF00293 NUDIX domain CL55_RS07145 PF00533 BRCA1 C Terminus (BRCT) domain CL55_RS07145 PF01653 NAD-dependent DNA ligase adenylation domain CL55_RS07145 PF03120 NAD-dependent DNA ligase OB-fold domain CL55_RS07145 PF12826 Helix-hairpin-helix motif CL55_RS07145 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CL55_RS07155 PF02463 RecF/RecN/SMC N terminal domain CL55_RS07155 PF06470 SMC proteins Flexible Hinge Domain CL55_RS07160 PF14602 Hexapeptide repeat of succinyl-transferase CL55_RS07160 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CL55_RS07160 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS07165 PF01546 Peptidase family M20/M25/M40 CL55_RS07165 PF07687 Peptidase dimerisation domain CL55_RS07170 PF05175 Methyltransferase small domain CL55_RS07175 PF18073 Rubredoxin metal binding domain CL55_RS07185 PF02705 K+ potassium transporter CL55_RS07215 PF00753 Metallo-beta-lactamase superfamily CL55_RS07215 PF03772 Competence protein CL55_RS07220 PF01026 TatD related DNase CL55_RS07225 PF00005 ABC transporter CL55_RS07230 PF02687 FtsX-like permease family CL55_RS07230 PF12704 MacB-like periplasmic core domain CL55_RS07240 PF02272 DHHA1 domain CL55_RS07240 PF01368 DHH family CL55_RS07240 PF17768 RecJ OB domain CL55_RS07245 PF00472 RF-1 domain CL55_RS07245 PF03462 PCRF domain CL55_RS07250 PF00152 tRNA synthetases class II (D, K and N) CL55_RS07250 PF01336 OB-fold nucleic acid binding domain CL55_RS07270 PF00970 Oxidoreductase FAD-binding domain CL55_RS07270 PF00175 Oxidoreductase NAD-binding domain CL55_RS07275 PF03601 Conserved hypothetical protein 698 CL55_RS07280 PF07702 UTRA domain CL55_RS07280 PF00392 Bacterial regulatory proteins, gntR family CL55_RS07285 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CL55_RS07290 PF08666 SAF domain CL55_RS07295 PF02615 Malate/L-lactate dehydrogenase CL55_RS07300 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS07310 PF00890 FAD binding domain CL55_RS07310 PF02910 Fumarate reductase flavoprotein C-term CL55_RS07315 PF05683 Fumarase C-terminus CL55_RS07320 PF05683 Fumarase C-terminus CL55_RS07320 PF05681 Fumarate hydratase (Fumerase) CL55_RS07335 PF13183 4Fe-4S dicluster domain CL55_RS07335 PF13085 2Fe-2S iron-sulfur cluster binding domain CL55_RS07340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CL55_RS07340 PF03466 LysR substrate binding domain CL55_RS07355 PF00111 2Fe-2S iron-sulfur cluster binding domain CL55_RS07360 PF00012 Hsp70 protein CL55_RS07365 PF07743 HSCB C-terminal oligomerisation domain CL55_RS07370 PF01521 Iron-sulphur cluster biosynthesis CL55_RS07375 PF01592 NifU-like N terminal domain CL55_RS07380 PF00266 Aminotransferase class-V CL55_RS07385 PF02082 Transcriptional regulator CL55_RS07390 PF02151 UvrB/uvrC motif CL55_RS07390 PF04851 Type III restriction enzyme, res subunit CL55_RS07390 PF17757 UvrB interaction domain CL55_RS07390 PF00271 Helicase conserved C-terminal domain CL55_RS07390 PF12344 Ultra-violet resistance protein B CL55_RS07395 PF00155 Aminotransferase class I and II CL55_RS07405 PF04060 Putative Fe-S cluster CL55_RS07410 PF00730 HhH-GPD superfamily base excision DNA repair protein CL55_RS07410 PF10576 Iron-sulfur binding domain of endonuclease III CL55_RS07410 PF00633 Helix-hairpin-helix motif CL55_RS07420 PF00892 EamA-like transporter family CL55_RS07430 PF00463 Isocitrate lyase family CL55_RS07440 PF00004 ATPase family associated with various cellular activities (AAA) CL55_RS07440 PF07724 AAA domain (Cdc48 subfamily) CL55_RS07440 PF17871 AAA lid domain CL55_RS07440 PF10431 C-terminal, D2-small domain, of ClpB protein CL55_RS07440 PF02861 Clp amino terminal domain, pathogenicity island component CL55_RS07445 PF01541 GIY-YIG catalytic domain CL55_RS07490 PF01593 Flavin containing amine oxidoreductase CL55_RS07495 PF02391 MoaE protein CL55_RS07505 PF00994 Probable molybdopterin binding domain CL55_RS07505 PF03454 MoeA C-terminal region (domain IV) CL55_RS07505 PF03453 MoeA N-terminal region (domain I and II) CL55_RS07510 PF14821 Threonine synthase N terminus CL55_RS07510 PF00291 Pyridoxal-phosphate dependent enzyme CL55_RS07515 PF01842 ACT domain CL55_RS07515 PF00742 Homoserine dehydrogenase CL55_RS07515 PF03447 Homoserine dehydrogenase, NAD binding domain CL55_RS07520 PF00155 Aminotransferase class I and II CL55_RS07525 PF04430 Protein of unknown function (DUF498/DUF598) CL55_RS07530 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CL55_RS07535 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CL55_RS07540 PF00535 Glycosyl transferase family 2 CL55_RS07545 PF02911 Formyl transferase, C-terminal domain CL55_RS07545 PF01370 NAD dependent epimerase/dehydratase family CL55_RS07545 PF00551 Formyl transferase CL55_RS07550 PF01370 NAD dependent epimerase/dehydratase family CL55_RS07550 PF02911 Formyl transferase, C-terminal domain CL55_RS07550 PF00551 Formyl transferase CL55_RS07555 PF01522 Polysaccharide deacetylase CL55_RS07560 PF00578 AhpC/TSA family CL55_RS07565 PF13638 PIN domain CL55_RS07565 PF02562 PhoH-like protein CL55_RS07570 PF00877 NlpC/P60 family CL55_RS07575 PF03796 DnaB-like helicase C terminal domain CL55_RS07575 PF00772 DnaB-like helicase N terminal domain CL55_RS07580 PF03948 Ribosomal protein L9, C-terminal domain CL55_RS07580 PF01281 Ribosomal protein L9, N-terminal domain CL55_RS07585 PF01084 Ribosomal protein S18 CL55_RS07595 PF01250 Ribosomal protein S6 CL55_RS07600 PF00710 Asparaginase, N-terminal CL55_RS07600 PF17763 Glutaminase/Asparaginase C-terminal domain CL55_RS07605 PF01726 LexA DNA binding domain CL55_RS07605 PF00717 Peptidase S24-like CL55_RS07625 PF01066 CDP-alcohol phosphatidyltransferase CL55_RS07630 PF02151 UvrB/uvrC motif CL55_RS07630 PF01541 GIY-YIG catalytic domain CL55_RS07630 PF08459 UvrC Helix-hairpin-helix N-terminal CL55_RS07640 PF01132 Elongation factor P (EF-P) OB domain CL55_RS07640 PF08207 Elongation factor P (EF-P) KOW-like domain CL55_RS07640 PF09285 Elongation factor P, C-terminal CL55_RS07645 PF00933 Glycosyl hydrolase family 3 N terminal domain CL55_RS07650 PF01648 4'-phosphopantetheinyl transferase superfamily CL55_RS07655 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CL55_RS07660 PF11967 Recombination protein O N terminal CL55_RS07660 PF02565 Recombination protein O C terminal CL55_RS07665 PF07650 KH domain CL55_RS07665 PF01926 50S ribosome-binding GTPase CL55_RS07670 PF14622 Ribonuclease-III-like CL55_RS07670 PF00035 Double-stranded RNA binding motif CL55_RS07675 PF10502 Signal peptidase, peptidase S26 CL55_RS07680 PF03144 Elongation factor Tu domain 2 CL55_RS07680 PF00009 Elongation factor Tu GTP binding domain CL55_RS07680 PF06421 GTP-binding protein LepA C-terminus CL55_RS07680 PF00679 Elongation factor G C-terminus CL55_RS07685 PF13180 PDZ domain CL55_RS07690 PF02801 Beta-ketoacyl synthase, C-terminal domain CL55_RS07690 PF00109 Beta-ketoacyl synthase, N-terminal domain CL55_RS07695 PF00550 Phosphopantetheine attachment site CL55_RS07705 PF00698 Acyl transferase domain CL55_RS07710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CL55_RS07710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CL55_RS07715 PF02504 Fatty acid synthesis protein CL55_RS07720 PF01783 Ribosomal L32p protein family CL55_RS07725 PF02620 Large ribosomal RNA subunit accumulation protein YceD CL55_RS07730 PF02545 Maf-like protein CL55_RS07735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CL55_RS07740 PF06965 Na+/H+ antiporter 1 CL55_RS07740 PF01343 Peptidase family S49 CL55_RS07745 PF13419 Haloacid dehalogenase-like hydrolase CL55_RS07750 PF01479 S4 domain CL55_RS07750 PF00849 RNA pseudouridylate synthase CL55_RS07755 PF00575 S1 RNA binding domain CL55_RS07755 PF10150 Ribonuclease E/G family CL55_RS07755 PF12111 Polyribonucleotide phosphorylase C terminal CL55_RS07760 PF06463 Molybdenum Cofactor Synthesis C CL55_RS07760 PF04055 Radical SAM superfamily CL55_RS07765 PF12804 MobA-like NTP transferase domain CL55_RS07770 PF03453 MoeA N-terminal region (domain I and II) CL55_RS07770 PF00994 Probable molybdopterin binding domain CL55_RS07770 PF03454 MoeA C-terminal region (domain IV) CL55_RS07780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL55_RS07780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL55_RS07785 PF03480 Bacterial extracellular solute-binding protein, family 7 CL55_RS07795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CL55_RS07810 PF11953 Domain of unknown function (DUF3470) CL55_RS07810 PF00037 4Fe-4S binding domain CL55_RS07815 PF07992 Pyridine nucleotide-disulphide oxidoreductase CL55_RS07820 PF00303 Thymidylate synthase CL55_RS07825 PF00186 Dihydrofolate reductase CL55_RS07830 PF01979 Amidohydrolase family CL55_RS07835 PF03480 Bacterial extracellular solute-binding protein, family 7 CL55_RS07840 PF01523 Putative modulator of DNA gyrase CL55_RS07845 PF00994 Probable molybdopterin binding domain CL55_RS07850 PF00929 Exonuclease CL55_RS07855 PF01435 Peptidase family M48 CL55_RS07855 PF16491 CAAX prenyl protease N-terminal, five membrane helices CL55_RS07860 PF03193 RsgA GTPase CL55_RS07865 PF03186 CobD/Cbib protein CL55_RS07865 PF17113 Regulatory signalling modulator protein AmpE CL55_RS07870 PF00293 NUDIX domain CL55_RS07875 PF01245 Ribosomal protein L19 CL55_RS07880 PF01746 tRNA (Guanine-1)-methyltransferase CL55_RS07885 PF01782 RimM N-terminal domain CL55_RS07890 PF00886 Ribosomal protein S16 CL55_RS07905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CL55_RS07905 PF02770 Acyl-CoA dehydrogenase, middle domain CL55_RS07905 PF12806 Acetyl-CoA dehydrogenase C-terminal like CL55_RS07905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CL55_RS07910 PF00766 Electron transfer flavoprotein FAD-binding domain CL55_RS07910 PF01012 Electron transfer flavoprotein domain CL55_RS07915 PF01012 Electron transfer flavoprotein domain CL55_RS07920 PF00501 AMP-binding enzyme CL55_RS07920 PF13193 AMP-binding enzyme C-terminal domain CL55_RS07925 PF00850 Histone deacetylase domain CL55_RS07930 PF13406 Transglycosylase SLT domain CL55_RS07935 PF00291 Pyridoxal-phosphate dependent enzyme CL55_RS07960 PF01370 NAD dependent epimerase/dehydratase family CL55_RS07965 PF00294 pfkB family carbohydrate kinase CL55_RS07970 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CL55_RS07970 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CL55_RS07970 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CL55_RS07975 PF18073 Rubredoxin metal binding domain CL55_RS07980 PF00216 Bacterial DNA-binding protein CL55_RS07985 PF00575 S1 RNA binding domain CL55_RS07990 PF02224 Cytidylate kinase CL55_RS07995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CL55_RS08000 PF02153 Prephenate dehydrogenase CL55_RS08000 PF01842 ACT domain CL55_RS08005 PF00155 Aminotransferase class I and II CL55_RS08010 PF01817 Chorismate mutase type II CL55_RS08010 PF00800 Prephenate dehydratase CL55_RS08010 PF01842 ACT domain CL55_RS08015 PF00266 Aminotransferase class-V CL55_RS08020 PF03989 DNA gyrase C-terminal domain, beta-propeller CL55_RS08020 PF00521 DNA gyrase/topoisomerase IV, subunit A CL55_RS08025 PF00691 OmpA family CL55_RS08035 PF13419 Haloacid dehalogenase-like hydrolase CL55_RS08040 PF00920 Dehydratase family CL55_RS08060 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS08065 PF00581 Rhodanese-like domain CL55_RS08065 PF17773 UPF0176 acylphosphatase like domain CL55_RS08070 PF03992 Antibiotic biosynthesis monooxygenase CL55_RS08075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL55_RS08075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL55_RS08090 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS08095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CL55_RS08100 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CL55_RS08105 PF02163 Peptidase family M50 CL55_RS08110 PF01322 Cytochrome C' CL55_RS08120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL55_RS08120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL55_RS08125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL55_RS08125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL55_RS08130 PF00701 Dihydrodipicolinate synthetase family CL55_RS08135 PF16868 NMT1-like family CL55_RS08145 PF13378 Enolase C-terminal domain-like CL55_RS08145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CL55_RS08150 PF01551 Peptidase family M23 CL55_RS08150 PF01476 LysM domain CL55_RS08150 PF08525 Opacity-associated protein A N-terminal motif CL55_RS08165 PF00916 Sulfate permease family CL55_RS08165 PF01740 STAS domain CL55_RS08175 PF00027 Cyclic nucleotide-binding domain CL55_RS08175 PF13545 Crp-like helix-turn-helix domain CL55_RS08190 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CL55_RS08190 PF12801 4Fe-4S binding domain CL55_RS08190 PF13746 4Fe-4S dicluster domain CL55_RS08195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CL55_RS08195 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CL55_RS08210 PF00115 Cytochrome C and Quinol oxidase polypeptide I CL55_RS08220 PF00403 Heavy-metal-associated domain CL55_RS08235 PF16868 NMT1-like family CL55_RS08250 PF03918 Cytochrome C biogenesis protein CL55_RS08255 PF08534 Redoxin CL55_RS08260 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CL55_RS08260 PF01578 Cytochrome C assembly protein CL55_RS08265 PF03100 CcmE CL55_RS08275 PF01578 Cytochrome C assembly protein CL55_RS08280 PF03379 CcmB protein CL55_RS08285 PF00005 ABC transporter CL55_RS08295 PF08240 Alcohol dehydrogenase GroES-like domain CL55_RS08295 PF00107 Zinc-binding dehydrogenase CL55_RS08305 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CL55_RS08345 PF03441 FAD binding domain of DNA photolyase CL55_RS08345 PF00875 DNA photolyase CL55_RS08355 PF00850 Histone deacetylase domain CL55_RS08390 PF00694 Aconitase C-terminal domain CL55_RS08395 PF00330 Aconitase family (aconitate hydratase) CL55_RS08400 PF00561 alpha/beta hydrolase fold CL55_RS08415 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CL55_RS08420 PF00881 Nitroreductase family CL55_RS08425 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS08430 PF00171 Aldehyde dehydrogenase family CL55_RS08440 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL55_RS08440 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CL55_RS08445 PF00753 Metallo-beta-lactamase superfamily CL55_RS08450 PF00111 2Fe-2S iron-sulfur cluster binding domain CL55_RS08450 PF01799 [2Fe-2S] binding domain CL55_RS08455 PF00941 FAD binding domain in molybdopterin dehydrogenase CL55_RS08455 PF03450 CO dehydrogenase flavoprotein C-terminal domain CL55_RS08460 PF00378 Enoyl-CoA hydratase/isomerase CL55_RS08470 PF00465 Iron-containing alcohol dehydrogenase CL55_RS08475 PF13193 AMP-binding enzyme C-terminal domain CL55_RS08475 PF00501 AMP-binding enzyme CL55_RS08485 PF00005 ABC transporter CL55_RS08485 PF12399 Branched-chain amino acid ATP-binding cassette transporter CL55_RS08490 PF00005 ABC transporter CL55_RS08505 PF01638 HxlR-like helix-turn-helix CL55_RS08510 PF03401 Tripartite tricarboxylate transporter family receptor CL55_RS08515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CL55_RS08520 PF00682 HMGL-like CL55_RS08525 PF02515 CoA-transferase family III CL55_RS08530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CL55_RS08530 PF03466 LysR substrate binding domain CL55_RS08545 PF04545 Sigma-70, region 4 CL55_RS08545 PF04539 Sigma-70 region 3 CL55_RS08545 PF04542 Sigma-70 region 2 CL55_RS08545 PF00140 Sigma-70 factor, region 1.2 CL55_RS08545 PF03979 Sigma-70 factor, region 1.1 CL55_RS08545 PF04546 Sigma-70, non-essential region CL55_RS08550 PF10410 DnaB-helicase binding domain of primase CL55_RS08550 PF01807 CHC2 zinc finger CL55_RS08550 PF08275 DNA primase catalytic core, N-terminal domain CL55_RS08550 PF08278 DNA primase DnaG DnaB-binding CL55_RS08560 PF01165 Ribosomal protein S21 CL55_RS08565 PF00814 Glycoprotease family CL55_RS08570 PF02649 Type I GTP cyclohydrolase folE2 CL55_RS08575 PF02780 Transketolase, C-terminal domain CL55_RS08575 PF02779 Transketolase, pyrimidine binding domain CL55_RS08575 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CL55_RS08580 PF00348 Polyprenyl synthetase CL55_RS08585 PF02609 Exonuclease VII small subunit CL55_RS08595 PF00581 Rhodanese-like domain CL55_RS08605 PF01738 Dienelactone hydrolase family CL55_RS08610 PF01612 3'-5' exonuclease CL55_RS08610 PF01367 5'-3' exonuclease, C-terminal SAM fold CL55_RS08610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CL55_RS08610 PF00476 DNA polymerase family A CL55_RS08620 PF01636 Phosphotransferase enzyme family CL55_RS08630 PF00580 UvrD/REP helicase N-terminal domain CL55_RS08630 PF13361 UvrD-like helicase C-terminal domain CL55_RS08635 PF08264 Anticodon-binding domain of tRNA CL55_RS08635 PF00133 tRNA synthetases class I (I, L, M and V) CL55_RS08635 PF10458 Valyl tRNA synthetase tRNA binding arm CL55_RS08640 PF00483 Nucleotidyl transferase CL55_RS08645 PF01206 Sulfurtransferase TusA CL55_RS08650 PF01411 tRNA synthetases class II (A) CL55_RS08650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CL55_RS08650 PF02272 DHHA1 domain CL55_RS08660 PF01970 Tripartite tricarboxylate transporter TctA family CL55_RS08665 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CL55_RS08665 PF00749 tRNA synthetases class I (E and Q), catalytic domain CL55_RS08675 PF00111 2Fe-2S iron-sulfur cluster binding domain CL55_RS08675 PF00175 Oxidoreductase NAD-binding domain CL55_RS08675 PF00970 Oxidoreductase FAD-binding domain CL55_RS08680 PF00202 Aminotransferase class-III CL55_RS08685 PF02401 LytB protein CL55_RS08690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CL55_RS08695 PF04002 RadC-like JAB domain CL55_RS08700 PF00830 Ribosomal L28 family CL55_RS08705 PF00471 Ribosomal protein L33 CL55_RS08715 PF01029 NusB family CL55_RS08715 PF01189 16S rRNA methyltransferase RsmB/F CL55_RS08720 PF00551 Formyl transferase CL55_RS08725 PF06574 FAD synthetase CL55_RS08725 PF01687 Riboflavin kinase CL55_RS08730 PF00133 tRNA synthetases class I (I, L, M and V) CL55_RS08730 PF06827 Zinc finger found in FPG and IleRS CL55_RS08730 PF08264 Anticodon-binding domain of tRNA CL55_RS08735 PF01252 Signal peptidase (SPase) II CL55_RS08740 PF02441 Flavoprotein CL55_RS08740 PF04127 DNA / pantothenate metabolism flavoprotein CL55_RS08745 PF00692 dUTPase CL55_RS08750 PF00004 ATPase family associated with various cellular activities (AAA) CL55_RS08750 PF07724 AAA domain (Cdc48 subfamily) CL55_RS08750 PF17871 AAA lid domain CL55_RS08750 PF10431 C-terminal, D2-small domain, of ClpB protein CL55_RS08750 PF02861 Clp amino terminal domain, pathogenicity island component CL55_RS08755 PF02617 ATP-dependent Clp protease adaptor protein ClpS CL55_RS08760 PF00313 'Cold-shock' DNA-binding domain CL55_RS08770 PF06865 Pyrimidine/purine nucleoside phosphorylase CL55_RS08775 PF00764 Arginosuccinate synthase CL55_RS08780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CL55_RS08780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CL55_RS08790 PF01649 Ribosomal protein S20 CL55_RS08795 PF03023 Lipid II flippase MurJ CL55_RS08800 PF13369 Transglutaminase-like superfamily CL55_RS08810 PF00586 AIR synthase related protein, N-terminal domain CL55_RS08810 PF02769 AIR synthase related protein, C-terminal domain CL55_RS08815 PF01594 AI-2E family transporter CL55_RS08820 PF08299 Bacterial dnaA protein helix-turn-helix CL55_RS08820 PF00308 Bacterial dnaA protein CL55_RS08830 PF12627 Probable RNA and SrmB- binding site of polymerase A CL55_RS08830 PF01743 Poly A polymerase head domain CL55_RS08830 PF12626 Polymerase A arginine-rich C-terminus CL55_RS08835 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CL55_RS08840 PF02548 Ketopantoate hydroxymethyltransferase CL55_RS08845 PF00684 DnaJ central domain CL55_RS08845 PF00226 DnaJ domain CL55_RS08845 PF01556 DnaJ C terminal domain CL55_RS08850 PF00012 Hsp70 protein CL55_RS08855 PF01025 GrpE CL55_RS08860 PF00762 Ferrochelatase CL55_RS08865 PF01628 HrcA protein C terminal domain CL55_RS08865 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CL55_RS08870 PF01513 ATP-NAD kinase CL55_RS08875 PF02463 RecF/RecN/SMC N terminal domain CL55_RS08880 PF03710 Glutamate-ammonia ligase adenylyltransferase CL55_RS08880 PF08335 GlnD PII-uridylyltransferase CL55_RS08890 PF00795 Carbon-nitrogen hydrolase CL55_RS08895 PF01523 Putative modulator of DNA gyrase CL55_RS08900 PF00793 DAHP synthetase I family CL55_RS08905 PF01923 Cobalamin adenosyltransferase CL55_RS08910 PF01565 FAD binding domain CL55_RS08910 PF02913 FAD linked oxidases, C-terminal domain CL55_RS08915 PF01565 FAD binding domain CL55_RS08920 PF02754 Cysteine-rich domain CL55_RS08920 PF13183 4Fe-4S dicluster domain CL55_RS08925 PF01168 Alanine racemase, N-terminal domain CL55_RS08930 PF14748 Pyrroline-5-carboxylate reductase dimerisation CL55_RS08930 PF03807 NADP oxidoreductase coenzyme F420-dependent CL55_RS08935 PF01040 UbiA prenyltransferase family CL55_RS08940 PF17191 RecG wedge domain CL55_RS08940 PF00270 DEAD/DEAH box helicase CL55_RS08940 PF00271 Helicase conserved C-terminal domain CL55_RS08945 PF02547 Queuosine biosynthesis protein CL55_RS08950 PF01702 Queuine tRNA-ribosyltransferase CL55_RS08955 PF02699 Preprotein translocase subunit CL55_RS08960 PF02355 Protein export membrane protein CL55_RS08960 PF13721 SecD export protein N-terminal TM region CL55_RS08960 PF07549 SecD/SecF GG Motif CL55_RS08965 PF02355 Protein export membrane protein CL55_RS08965 PF07549 SecD/SecF GG Motif CL55_RS08970 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CL55_RS08970 PF00534 Glycosyl transferases group 1 CL55_RS08975 PF00206 Lyase CL55_RS08975 PF08328 Adenylosuccinate lyase C-terminal CL55_RS08980 PF00043 Glutathione S-transferase, C-terminal domain CL55_RS08980 PF13417 Glutathione S-transferase, N-terminal domain CL55_RS08990 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CL55_RS08990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CL55_RS08995 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CL55_RS09000 PF02233 NAD(P) transhydrogenase beta subunit CL55_RS09020 PF00118 TCP-1/cpn60 chaperonin family CL55_RS09025 PF00166 Chaperonin 10 Kd subunit CL55_RS09035 PF00072 Response regulator receiver domain CL55_RS09035 PF00196 Bacterial regulatory proteins, luxR family CL55_RS09040 PF01627 Hpt domain CL55_RS09040 PF00497 Bacterial extracellular solute-binding proteins, family 3 CL55_RS09040 PF00512 His Kinase A (phospho-acceptor) domain CL55_RS09040 PF00072 Response regulator receiver domain CL55_RS09040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS09045 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CL55_RS09050 PF03481 Putative GTP-binding controlling metal-binding CL55_RS09050 PF01300 Telomere recombination CL55_RS09055 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CL55_RS09055 PF02222 ATP-grasp domain CL55_RS09060 PF00731 AIR carboxylase CL55_RS09065 PF01259 SAICAR synthetase CL55_RS09070 PF01116 Fructose-bisphosphate aldolase class-II CL55_RS09075 PF02887 Pyruvate kinase, alpha/beta domain CL55_RS09075 PF00224 Pyruvate kinase, barrel domain CL55_RS09080 PF00162 Phosphoglycerate kinase CL55_RS09085 PF01063 Amino-transferase class IV CL55_RS09095 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CL55_RS09115 PF01967 MoaC family CL55_RS09120 PF00114 Pilin (bacterial filament) CL55_RS09120 PF07963 Prokaryotic N-terminal methylation motif CL55_RS09125 PF03741 Integral membrane protein TerC family CL55_RS09130 PF02629 CoA binding domain CL55_RS09130 PF00549 CoA-ligase CL55_RS09135 PF08442 ATP-grasp domain CL55_RS09135 PF00549 CoA-ligase CL55_RS09140 PF02631 RecX family CL55_RS09145 PF00154 recA bacterial DNA recombination protein CL55_RS09160 PF00474 Sodium:solute symporter family CL55_RS09180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CL55_RS09180 PF07733 Bacterial DNA polymerase III alpha NTPase domain CL55_RS09180 PF11490 DNA polymerase III polC-type N-terminus II CL55_RS09180 PF14579 Helix-hairpin-helix motif CL55_RS09180 PF02811 PHP domain CL55_RS09180 PF00929 Exonuclease CL55_RS09180 PF14480 DNA polymerase III polC-type N-terminus I CL55_RS09185 PF00571 CBS domain CL55_RS09195 PF09335 SNARE associated Golgi protein CL55_RS09205 PF03475 3-alpha domain CL55_RS09205 PF03473 MOSC domain CL55_RS09210 PF07690 Major Facilitator Superfamily CL55_RS09210 PF07690 Major Facilitator Superfamily CL55_RS09215 PF03480 Bacterial extracellular solute-binding protein, family 7 CL55_RS09225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CL55_RS09235 PF03458 UPF0126 domain CL55_RS09240 PF02798 Glutathione S-transferase, N-terminal domain CL55_RS09240 PF14497 Glutathione S-transferase, C-terminal domain CL55_RS09245 PF02558 Ketopantoate reductase PanE/ApbA CL55_RS09245 PF08546 Ketopantoate reductase PanE/ApbA C terminal CL55_RS09250 PF00355 Rieske [2Fe-2S] domain CL55_RS09255 PF00596 Class II Aldolase and Adducin N-terminal domain CL55_RS09260 PF03466 LysR substrate binding domain CL55_RS09260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CL55_RS09275 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS09280 PF00909 Ammonium Transporter Family CL55_RS09295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS09295 PF00183 Hsp90 protein CL55_RS09310 PF00919 Uncharacterized protein family UPF0004 CL55_RS09310 PF04055 Radical SAM superfamily CL55_RS09310 PF01938 TRAM domain CL55_RS09315 PF02130 Uncharacterized protein family UPF0054 CL55_RS09320 PF03471 Transporter associated domain CL55_RS09320 PF00571 CBS domain CL55_RS09325 PF00795 Carbon-nitrogen hydrolase CL55_RS09330 PF02091 Glycyl-tRNA synthetase alpha subunit CL55_RS09335 PF05746 DALR anticodon binding domain CL55_RS09335 PF02092 Glycyl-tRNA synthetase beta subunit CL55_RS09345 PF01553 Acyltransferase CL55_RS09350 PF00398 Ribosomal RNA adenine dimethylase CL55_RS09355 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CL55_RS09360 PF09312 SurA N-terminal domain CL55_RS09365 PF03968 OstA-like protein CL55_RS09365 PF04453 LPS transport system D CL55_RS09370 PF01636 Phosphotransferase enzyme family CL55_RS09375 PF00483 Nucleotidyl transferase CL55_RS09380 PF00557 Metallopeptidase family M24 CL55_RS09380 PF05195 Aminopeptidase P, N-terminal domain CL55_RS09385 PF01494 FAD binding domain CL55_RS09390 PF01207 Dihydrouridine synthase (Dus) CL55_RS09395 PF02954 Bacterial regulatory protein, Fis family CL55_RS09400 PF01808 AICARFT/IMPCHase bienzyme CL55_RS09400 PF02142 MGS-like domain CL55_RS09405 PF02075 Crossover junction endodeoxyribonuclease RuvC CL55_RS09410 PF07499 RuvA, C-terminal domain CL55_RS09410 PF01330 RuvA N terminal domain CL55_RS09415 PF05491 RuvB C-terminal winged helix domain CL55_RS09415 PF17864 RuvB AAA lid domain CL55_RS09415 PF05496 Holliday junction DNA helicase RuvB P-loop domain CL55_RS09420 PF01479 S4 domain CL55_RS09420 PF00579 tRNA synthetases class I (W and Y) CL55_RS09425 PF03702 Anhydro-N-acetylmuramic acid kinase CL55_RS09430 PF01521 Iron-sulphur cluster biosynthesis CL55_RS09435 PF02774 Semialdehyde dehydrogenase, dimerisation domain CL55_RS09435 PF01118 Semialdehyde dehydrogenase, NAD binding domain CL55_RS09440 PF00380 Ribosomal protein S9/S16 CL55_RS09445 PF00572 Ribosomal protein L13 CL55_RS09450 PF02566 OsmC-like protein CL55_RS09455 PF01979 Amidohydrolase family CL55_RS09460 PF13660 Domain of unknown function (DUF4147) CL55_RS09460 PF05161 MOFRL family CL55_RS09465 PF00664 ABC transporter transmembrane region CL55_RS09465 PF00005 ABC transporter CL55_RS09470 PF00293 NUDIX domain CL55_RS09475 PF01336 OB-fold nucleic acid binding domain CL55_RS09475 PF00152 tRNA synthetases class II (D, K and N) CL55_RS09475 PF02938 GAD domain CL55_RS09485 PF03109 ABC1 family CL55_RS09500 PF01209 ubiE/COQ5 methyltransferase family CL55_RS09515 PF00291 Pyridoxal-phosphate dependent enzyme CL55_RS09515 PF00585 C-terminal regulatory domain of Threonine dehydratase CL55_RS09525 PF14489 QueF-like protein CL55_RS09525 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CL55_RS09530 PF00436 Single-strand binding protein family CL55_RS09535 PF07690 Major Facilitator Superfamily CL55_RS09540 PF17755 UvrA DNA-binding domain CL55_RS09540 PF17760 UvrA interaction domain CL55_RS09545 PF00999 Sodium/hydrogen exchanger family CL55_RS09545 PF02080 TrkA-C domain CL55_RS09545 PF02254 TrkA-N domain CL55_RS09550 PF01380 SIS domain CL55_RS09550 PF00571 CBS domain CL55_RS09570 PF00005 ABC transporter CL55_RS09570 PF12399 Branched-chain amino acid ATP-binding cassette transporter CL55_RS09575 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CL55_RS09580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CL55_RS09585 PF02603 HPr Serine kinase N terminus CL55_RS09585 PF07475 HPr Serine kinase C-terminal domain CL55_RS09590 PF03668 P-loop ATPase protein family CL55_RS09595 PF14815 NUDIX domain CL55_RS09595 PF10576 Iron-sulfur binding domain of endonuclease III CL55_RS09595 PF00633 Helix-hairpin-helix motif CL55_RS09595 PF00730 HhH-GPD superfamily base excision DNA repair protein CL55_RS09600 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CL55_RS09600 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CL55_RS09600 PF06827 Zinc finger found in FPG and IleRS CL55_RS09610 PF08544 GHMP kinases C terminal CL55_RS09610 PF00288 GHMP kinases N terminal domain CL55_RS09620 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CL55_RS09620 PF14572 Phosphoribosyl synthetase-associated domain CL55_RS09625 PF01386 Ribosomal L25p family CL55_RS09625 PF14693 Ribosomal protein TL5, C-terminal domain CL55_RS09630 PF01195 Peptidyl-tRNA hydrolase CL55_RS09635 PF00037 4Fe-4S binding domain CL55_RS09640 PF01467 Cytidylyltransferase-like CL55_RS09650 PF05193 Peptidase M16 inactive domain CL55_RS09655 PF00675 Insulinase (Peptidase family M16) CL55_RS09655 PF05193 Peptidase M16 inactive domain CL55_RS09660 PF02881 SRP54-type protein, helical bundle domain CL55_RS09660 PF00448 SRP54-type protein, GTPase domain CL55_RS09665 PF04545 Sigma-70, region 4 CL55_RS09665 PF04542 Sigma-70 region 2 CL55_RS09665 PF00140 Sigma-70 factor, region 1.2 CL55_RS09670 PF02630 SCO1/SenC CL55_RS09675 PF01040 UbiA prenyltransferase family CL55_RS09680 PF02628 Cytochrome oxidase assembly protein CL55_RS09700 PF00510 Cytochrome c oxidase subunit III CL55_RS09710 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CL55_RS09715 PF00115 Cytochrome C and Quinol oxidase polypeptide I CL55_RS09720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CL55_RS09720 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CL55_RS09725 PF08241 Methyltransferase domain CL55_RS09735 PF00588 SpoU rRNA Methylase family CL55_RS09740 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CL55_RS09740 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CL55_RS09745 PF02556 Preprotein translocase subunit SecB CL55_RS09750 PF00462 Glutaredoxin CL55_RS09760 PF00300 Histidine phosphatase superfamily (branch 1) CL55_RS09765 PF13180 PDZ domain CL55_RS09765 PF03572 Peptidase family S41 CL55_RS09770 PF00899 ThiF family CL55_RS09775 PF02896 PEP-utilising enzyme, TIM barrel domain CL55_RS09775 PF05524 PEP-utilising enzyme, N-terminal CL55_RS09775 PF00391 PEP-utilising enzyme, mobile domain CL55_RS09780 PF00381 PTS HPr component phosphorylation site CL55_RS09790 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CL55_RS09790 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CL55_RS09800 PF00909 Ammonium Transporter Family CL55_RS09805 PF00543 Nitrogen regulatory protein P-II CL55_RS09815 PF04380 Membrane fusogenic activity CL55_RS09825 PF04055 Radical SAM superfamily CL55_RS09825 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CL55_RS09830 PF03099 Biotin/lipoate A/B protein ligase family CL55_RS09835 PF04359 Protein of unknown function (DUF493) CL55_RS09855 PF02237 Biotin protein ligase C terminal domain CL55_RS09855 PF03099 Biotin/lipoate A/B protein ligase family CL55_RS09855 PF08279 HTH domain CL55_RS09860 PF03309 Type III pantothenate kinase CL55_RS09865 PF01467 Cytidylyltransferase-like CL55_RS09870 PF00255 Glutathione peroxidase CL55_RS09875 PF02027 RolB/RolC glucosidase family CL55_RS09875 PF01593 Flavin containing amine oxidoreductase CL55_RS09890 PF00106 short chain dehydrogenase CL55_RS09895 PF13462 Thioredoxin CL55_RS09905 PF03485 Arginyl tRNA synthetase N terminal domain CL55_RS09905 PF05746 DALR anticodon binding domain CL55_RS09905 PF00750 tRNA synthetases class I (R) CL55_RS09915 PF02310 B12 binding domain CL55_RS09915 PF02607 B12 binding domain CL55_RS09915 PF02965 Vitamin B12 dependent methionine synthase, activation domain CL55_RS09915 PF00809 Pterin binding enzyme CL55_RS09915 PF02574 Homocysteine S-methyltransferase CL55_RS09920 PF00809 Pterin binding enzyme CL55_RS09920 PF02607 B12 binding domain CL55_RS09920 PF02574 Homocysteine S-methyltransferase CL55_RS09920 PF02965 Vitamin B12 dependent methionine synthase, activation domain CL55_RS09920 PF02310 B12 binding domain CL55_RS09935 PF08240 Alcohol dehydrogenase GroES-like domain CL55_RS09935 PF00107 Zinc-binding dehydrogenase CL55_RS09945 PF01613 Flavin reductase like domain CL55_RS09950 PF13417 Glutathione S-transferase, N-terminal domain CL55_RS09950 PF00043 Glutathione S-transferase, C-terminal domain CL55_RS09955 PF00873 AcrB/AcrD/AcrF family CL55_RS09960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CL55_RS09970 PF05726 Pirin C-terminal cupin domain CL55_RS09970 PF02678 Pirin CL55_RS09975 PF01380 SIS domain CL55_RS09980 PF14602 Hexapeptide repeat of succinyl-transferase CL55_RS09980 PF00132 Bacterial transferase hexapeptide (six repeats) CL55_RS09980 PF12804 MobA-like NTP transferase domain CL55_RS09985 PF01171 PP-loop family CL55_RS10005 PF01966 HD domain CL55_RS10005 PF12627 Probable RNA and SrmB- binding site of polymerase A CL55_RS10005 PF01743 Poly A polymerase head domain CL55_RS10015 PF14718 Soluble lytic murein transglycosylase L domain CL55_RS10015 PF01464 Transglycosylase SLT domain CL55_RS10020 PF01812 5-formyltetrahydrofolate cyclo-ligase family CL55_RS10025 PF02219 Methylenetetrahydrofolate reductase CL55_RS10030 PF05221 S-adenosyl-L-homocysteine hydrolase CL55_RS10030 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CL55_RS10035 PF00438 S-adenosylmethionine synthetase, N-terminal domain CL55_RS10035 PF02772 S-adenosylmethionine synthetase, central domain CL55_RS10035 PF02773 S-adenosylmethionine synthetase, C-terminal domain CL55_RS10050 PF01678 Diaminopimelate epimerase CL55_RS10055 PF00156 Phosphoribosyl transferase domain CL55_RS10060 PF03372 Endonuclease/Exonuclease/phosphatase family CL55_RS10065 PF07690 Major Facilitator Superfamily CL55_RS10075 PF00561 alpha/beta hydrolase fold CL55_RS10080 PF00440 Bacterial regulatory proteins, tetR family CL55_RS10085 PF00696 Amino acid kinase family CL55_RS10090 PF01258 Prokaryotic dksA/traR C4-type zinc finger CL55_RS10095 PF07683 Cobalamin synthesis protein cobW C-terminal domain CL55_RS10095 PF02492 CobW/HypB/UreG, nucleotide-binding domain CL55_RS10100 PF00589 Phage integrase family CL55_RS10100 PF02899 Phage integrase, N-terminal SAM-like domain CL55_RS10110 PF02637 GatB domain CL55_RS10110 PF02934 GatB/GatE catalytic domain CL55_RS10115 PF01425 Amidase CL55_RS10120 PF02686 Glu-tRNAGln amidotransferase C subunit CL55_RS10140 PF03717 Penicillin-binding Protein dimerisation domain CL55_RS10140 PF00905 Penicillin binding protein transpeptidase domain CL55_RS10145 PF01098 Cell cycle protein CL55_RS10150 PF00216 Bacterial DNA-binding protein CL55_RS10165 PF02594 Uncharacterised ACR, YggU family COG1872 CL55_RS10170 PF00484 Carbonic anhydrase CL55_RS10175 PF03279 Bacterial lipid A biosynthesis acyltransferase CL55_RS10180 PF01479 S4 domain CL55_RS10180 PF00849 RNA pseudouridylate synthase CL55_RS10185 PF16658 Class II release factor RF3, C-terminal domain CL55_RS10185 PF00009 Elongation factor Tu GTP binding domain CL55_RS10185 PF03144 Elongation factor Tu domain 2 CL55_RS10210 PF00583 Acetyltransferase (GNAT) family CL55_RS10215 PF00300 Histidine phosphatase superfamily (branch 1) CL55_RS10245 PF13419 Haloacid dehalogenase-like hydrolase CL55_RS10270 PF12146 Serine aminopeptidase, S33 CL55_RS10295 PF01966 HD domain CL55_RS10300 PF03707 Bacterial signalling protein N terminal repeat CL55_RS10300 PF00563 EAL domain CL55_RS10300 PF00990 Diguanylate cyclase, GGDEF domain CL55_RS10310 PF00535 Glycosyl transferase family 2 CL55_RS10325 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CL55_RS10325 PF18381 YcaO cyclodehydratase C-terminal domain CL55_RS10330 PF02954 Bacterial regulatory protein, Fis family CL55_RS10330 PF00072 Response regulator receiver domain CL55_RS10330 PF00158 Sigma-54 interaction domain CL55_RS10335 PF00512 His Kinase A (phospho-acceptor) domain CL55_RS10335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL55_RS10335 PF00672 HAMP domain CL55_RS10335 PF00989 PAS fold CL55_RS10345 PF01189 16S rRNA methyltransferase RsmB/F CL55_RS10345 PF01029 NusB family CL55_RS10350 PF02911 Formyl transferase, C-terminal domain CL55_RS10350 PF00551 Formyl transferase CL55_RS10355 PF01327 Polypeptide deformylase CL55_RS10360 PF17782 DprA winged helix domain CL55_RS10360 PF02481 DNA recombination-mediator protein A CL55_RS10365 PF01131 DNA topoisomerase CL55_RS10365 PF01751 Toprim domain CL55_RS10370 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CL55_RS10370 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CL55_RS10375 PF10396 GTP-binding protein TrmE N-terminus CL55_RS10375 PF12631 MnmE helical domain CL55_RS10375 PF01926 50S ribosome-binding GTPase CL55_RS10380 PF14849 YidC periplasmic domain CL55_RS10380 PF02096 60Kd inner membrane protein CL55_RS10385 PF00825 Ribonuclease P CL55_RS10405 PF00106 short chain dehydrogenase CL55_RS10430 PF01551 Peptidase family M23 CL55_RS10440 PF13614 AAA domain CL55_RS10445 PF12867 DinB superfamily CL55_RS10445 PF03781 Sulfatase-modifying factor enzyme 1 CL55_RS10450 PF07690 Major Facilitator Superfamily CL55_RS10455 PF01501 Glycosyl transferase family 8 CL55_RS10455 PF00535 Glycosyl transferase family 2 CL55_RS10460 PF01545 Cation efflux family CL55_RS10470 PF00520 Ion transport protein CL55_RS10470 PF00027 Cyclic nucleotide-binding domain CL55_RS10480 PF11737 Protein of unknown function (DUF3300)