CL55_RS00100	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS00110	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS00120	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS00120	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS00155	PWY-2201	folate transformations I
CL55_RS00160	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
CL55_RS00450	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS00450	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CL55_RS00465	PWY-2941	L-lysine biosynthesis II
CL55_RS00465	PWY-2942	L-lysine biosynthesis III
CL55_RS00465	PWY-5097	L-lysine biosynthesis VI
CL55_RS00480	PWY-6164	3-dehydroquinate biosynthesis I
CL55_RS00485	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CL55_RS00565	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL55_RS00565	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL55_RS00660	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS00660	PWY-6692	Fe(II) oxidation
CL55_RS00660	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CL55_RS00660	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL55_RS00720	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS00785	PWY-5958	acridone alkaloid biosynthesis
CL55_RS00785	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CL55_RS00785	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CL55_RS00790	PWY-5958	acridone alkaloid biosynthesis
CL55_RS00790	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CL55_RS00790	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CL55_RS00795	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CL55_RS00795	PWY-5723	Rubisco shunt
CL55_RS00825	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CL55_RS00840	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CL55_RS00855	PWY-2201	folate transformations I
CL55_RS00875	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL55_RS00875	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL55_RS00880	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CL55_RS00880	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CL55_RS00880	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CL55_RS00885	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL55_RS00885	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL55_RS00895	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CL55_RS00895	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CL55_RS00895	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CL55_RS00895	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CL55_RS00900	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL55_RS00900	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL55_RS00905	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL55_RS00905	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL55_RS00930	PWY-2201	folate transformations I
CL55_RS00930	PWY-5497	purine nucleobases degradation II (anaerobic)
CL55_RS00970	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS01030	PWY-6654	phosphopantothenate biosynthesis III
CL55_RS01065	PWY-3341	L-proline biosynthesis III
CL55_RS01065	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CL55_RS01100	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL55_RS01100	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS01100	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL55_RS01100	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL55_RS01100	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS01100	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS01100	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS01100	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CL55_RS01105	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL55_RS01105	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS01105	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL55_RS01105	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL55_RS01105	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS01105	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS01105	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS01105	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CL55_RS01140	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CL55_RS01140	PWY-6416	quinate degradation II
CL55_RS01140	PWY-6707	gallate biosynthesis
CL55_RS01170	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CL55_RS01180	PWY-5686	UMP biosynthesis
CL55_RS01200	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CL55_RS01200	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CL55_RS01200	PWY-6896	thiamin salvage I
CL55_RS01200	PWY-6897	thiamin salvage II
CL55_RS01205	PWY-1281	sulfoacetaldehyde degradation I
CL55_RS01205	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CL55_RS01205	PWY-5482	pyruvate fermentation to acetate II
CL55_RS01205	PWY-5485	pyruvate fermentation to acetate IV
CL55_RS01205	PWY-5497	purine nucleobases degradation II (anaerobic)
CL55_RS01205	PWY-6637	sulfolactate degradation II
CL55_RS01205	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CL55_RS01215	PWY-2201	folate transformations I
CL55_RS01220	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CL55_RS01220	PWY-5723	Rubisco shunt
CL55_RS01220	PWY-6891	thiazole biosynthesis II (Bacillus)
CL55_RS01220	PWY-6892	thiazole biosynthesis I (E. coli)
CL55_RS01220	PWY-6901	superpathway of glucose and xylose degradation
CL55_RS01220	PWY-7560	methylerythritol phosphate pathway II
CL55_RS01225	PWY-1042	glycolysis IV (plant cytosol)
CL55_RS01225	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS01225	PWY-6901	superpathway of glucose and xylose degradation
CL55_RS01225	PWY-7003	glycerol degradation to butanol
CL55_RS01240	PWY-2941	L-lysine biosynthesis II
CL55_RS01240	PWY-2942	L-lysine biosynthesis III
CL55_RS01240	PWY-5097	L-lysine biosynthesis VI
CL55_RS01260	PWY-3341	L-proline biosynthesis III
CL55_RS01260	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CL55_RS01270	PWY-6825	phosphatidylcholine biosynthesis V
CL55_RS01280	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS01315	PWY-5686	UMP biosynthesis
CL55_RS01345	PWY-3821	galactose degradation III
CL55_RS01345	PWY-6317	galactose degradation I (Leloir pathway)
CL55_RS01345	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CL55_RS01345	PWY-6527	stachyose degradation
CL55_RS01345	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CL55_RS01345	PWY-7344	UDP-D-galactose biosynthesis
CL55_RS01370	PWY-3221	dTDP-L-rhamnose biosynthesis II
CL55_RS01370	PWY-6808	dTDP-D-forosamine biosynthesis
CL55_RS01370	PWY-6942	dTDP-D-desosamine biosynthesis
CL55_RS01370	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CL55_RS01370	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CL55_RS01370	PWY-6974	dTDP-L-olivose biosynthesis
CL55_RS01370	PWY-6976	dTDP-L-mycarose biosynthesis
CL55_RS01370	PWY-7104	dTDP-L-megosamine biosynthesis
CL55_RS01370	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CL55_RS01370	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CL55_RS01370	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CL55_RS01370	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CL55_RS01370	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CL55_RS01370	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CL55_RS01370	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CL55_RS01370	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CL55_RS01370	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CL55_RS01370	PWY-7688	CL55_RS01370
CL55_RS01380	PWY-3221	dTDP-L-rhamnose biosynthesis II
CL55_RS01380	PWY-6808	dTDP-D-forosamine biosynthesis
CL55_RS01380	PWY-6942	dTDP-D-desosamine biosynthesis
CL55_RS01380	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CL55_RS01380	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CL55_RS01380	PWY-6974	dTDP-L-olivose biosynthesis
CL55_RS01380	PWY-6976	dTDP-L-mycarose biosynthesis
CL55_RS01380	PWY-7104	dTDP-L-megosamine biosynthesis
CL55_RS01380	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CL55_RS01380	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CL55_RS01380	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CL55_RS01380	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CL55_RS01380	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CL55_RS01380	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CL55_RS01380	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CL55_RS01380	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CL55_RS01380	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CL55_RS01380	PWY-7688	CL55_RS01380
CL55_RS01400	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CL55_RS01435	PWY-6167	flavin biosynthesis II (archaea)
CL55_RS01435	PWY-6168	flavin biosynthesis III (fungi)
CL55_RS01440	PWY-6167	flavin biosynthesis II (archaea)
CL55_RS01440	PWY-6168	flavin biosynthesis III (fungi)
CL55_RS01440	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CL55_RS01460	PWY-5525	D-glucuronate degradation I
CL55_RS01465	PWY-6167	flavin biosynthesis II (archaea)
CL55_RS01465	PWY-6168	flavin biosynthesis III (fungi)
CL55_RS01465	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS01470	PWY-6703	preQ<sub>0</sub> biosynthesis
CL55_RS01505	PWY-1622	formaldehyde assimilation I (serine pathway)
CL55_RS01505	PWY-181	photorespiration
CL55_RS01505	PWY-2161	folate polyglutamylation
CL55_RS01505	PWY-2201	folate transformations I
CL55_RS01505	PWY-3661	glycine betaine degradation I
CL55_RS01505	PWY-3661-1	glycine betaine degradation II (mammalian)
CL55_RS01505	PWY-3841	folate transformations II
CL55_RS01505	PWY-5497	purine nucleobases degradation II (anaerobic)
CL55_RS01515	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
CL55_RS01515	PWY-5739	GDP-D-perosamine biosynthesis
CL55_RS01515	PWY-5740	GDP-L-colitose biosynthesis
CL55_RS01515	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CL55_RS01515	PWY-7573	GDP-mycosamine biosynthesis
CL55_RS01520	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS01525	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CL55_RS01555	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL55_RS01555	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL55_RS01580	PWY-5663	tetrahydrobiopterin biosynthesis I
CL55_RS01580	PWY-5664	tetrahydrobiopterin biosynthesis II
CL55_RS01580	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL55_RS01580	PWY-6703	preQ<sub>0</sub> biosynthesis
CL55_RS01580	PWY-6983	tetrahydrobiopterin biosynthesis III
CL55_RS01580	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CL55_RS01605	PWY-5659	GDP-mannose biosynthesis
CL55_RS01605	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CL55_RS01610	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
CL55_RS01610	PWY-5739	GDP-D-perosamine biosynthesis
CL55_RS01610	PWY-5740	GDP-L-colitose biosynthesis
CL55_RS01610	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CL55_RS01610	PWY-7573	GDP-mycosamine biosynthesis
CL55_RS01645	PWY-5481	pyruvate fermentation to lactate
CL55_RS01645	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CL55_RS01645	PWY-6901	superpathway of glucose and xylose degradation
CL55_RS01680	PWY-3821	galactose degradation III
CL55_RS01680	PWY-6317	galactose degradation I (Leloir pathway)
CL55_RS01680	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CL55_RS01680	PWY-6527	stachyose degradation
CL55_RS01680	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CL55_RS01680	PWY-7344	UDP-D-galactose biosynthesis
CL55_RS01715	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CL55_RS01765	PWY-4381	fatty acid biosynthesis initiation I
CL55_RS01805	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CL55_RS01810	PWY-5194	siroheme biosynthesis
CL55_RS01810	PWY-5441	S-methyl-L-methionine cycle
CL55_RS01810	PWY-702	L-methionine biosynthesis II
CL55_RS01810	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CL55_RS01820	PWY-6683	sulfate reduction III (assimilatory)
CL55_RS01845	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CL55_RS01860	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CL55_RS01860	PWY-7494	choline degradation IV
CL55_RS01935	PWY-5913	TCA cycle VI (obligate autotrophs)
CL55_RS01935	PWY-6549	L-glutamine biosynthesis III
CL55_RS01935	PWY-6728	methylaspartate cycle
CL55_RS01935	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS01935	PWY-7124	ethylene biosynthesis V (engineered)
CL55_RS01935	PWY-7254	TCA cycle VII (acetate-producers)
CL55_RS01935	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CL55_RS01980	PWY-7158	L-phenylalanine degradation V
CL55_RS02045	PWY-7425	2-chloroacrylate degradation I
CL55_RS02260	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS02570	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CL55_RS02615	PWY-6700	queuosine biosynthesis
CL55_RS02640	PWY-6832	2-aminoethylphosphonate degradation II
CL55_RS02695	PWY-6825	phosphatidylcholine biosynthesis V
CL55_RS02705	PWY-5381	pyridine nucleotide cycling (plants)
CL55_RS02705	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CL55_RS02710	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS02710	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS02715	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL55_RS02715	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL55_RS02715	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL55_RS02815	PWY-6695	oxalate degradation II
CL55_RS02815	PWY-6696	oxalate degradation III
CL55_RS02820	PWY-6695	oxalate degradation II
CL55_RS02825	PWY-6695	oxalate degradation II
CL55_RS02860	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS02880	PWY-4983	L-citrulline-nitric oxide cycle
CL55_RS02880	PWY-4984	urea cycle
CL55_RS02880	PWY-5	canavanine biosynthesis
CL55_RS02880	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS02880	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS02885	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS02885	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CL55_RS02890	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS02890	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CL55_RS02895	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
CL55_RS02895	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CL55_RS02895	PWY-6148	tetrahydromethanopterin biosynthesis
CL55_RS02920	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CL55_RS02920	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CL55_RS02950	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS02955	PWY-7052	cyanophycin metabolism
CL55_RS02960	PWY-7052	cyanophycin metabolism
CL55_RS03015	PWY-5101	L-isoleucine biosynthesis II
CL55_RS03015	PWY-5103	L-isoleucine biosynthesis III
CL55_RS03015	PWY-5104	L-isoleucine biosynthesis IV
CL55_RS03015	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CL55_RS03070	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CL55_RS03085	PWY-6854	ethylene biosynthesis III (microbes)
CL55_RS03105	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL55_RS03105	PWY-6148	tetrahydromethanopterin biosynthesis
CL55_RS03105	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CL55_RS03105	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CL55_RS03110	PWY-5663	tetrahydrobiopterin biosynthesis I
CL55_RS03110	PWY-5664	tetrahydrobiopterin biosynthesis II
CL55_RS03110	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL55_RS03110	PWY-6703	preQ<sub>0</sub> biosynthesis
CL55_RS03110	PWY-6983	tetrahydrobiopterin biosynthesis III
CL55_RS03110	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CL55_RS03225	PWY-1361	benzoyl-CoA degradation I (aerobic)
CL55_RS03225	PWY-5109	2-methylbutanoate biosynthesis
CL55_RS03225	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CL55_RS03225	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CL55_RS03225	PWY-5177	glutaryl-CoA degradation
CL55_RS03225	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL55_RS03225	PWY-6435	4-hydroxybenzoate biosynthesis V
CL55_RS03225	PWY-6583	pyruvate fermentation to butanol I
CL55_RS03225	PWY-6863	pyruvate fermentation to hexanol
CL55_RS03225	PWY-6883	pyruvate fermentation to butanol II
CL55_RS03225	PWY-6944	androstenedione degradation
CL55_RS03225	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CL55_RS03225	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CL55_RS03225	PWY-7007	methyl ketone biosynthesis
CL55_RS03225	PWY-7046	4-coumarate degradation (anaerobic)
CL55_RS03225	PWY-7094	fatty acid salvage
CL55_RS03225	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CL55_RS03225	PWY-735	jasmonic acid biosynthesis
CL55_RS03225	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CL55_RS03225	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CL55_RS03225	PWY-7726	CL55_RS03225
CL55_RS03245	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
CL55_RS03295	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CL55_RS03295	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CL55_RS03295	PWY-5989	stearate biosynthesis II (bacteria and plants)
CL55_RS03295	PWY-6113	superpathway of mycolate biosynthesis
CL55_RS03295	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CL55_RS03295	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CL55_RS03295	PWY-7663	gondoate biosynthesis (anaerobic)
CL55_RS03295	PWY-7664	oleate biosynthesis IV (anaerobic)
CL55_RS03295	PWYG-321	mycolate biosynthesis
CL55_RS03465	PWY-4041	&gamma;-glutamyl cycle
CL55_RS03465	PWY-5826	hypoglycin biosynthesis
CL55_RS03520	PWY-2201	folate transformations I
CL55_RS03520	PWY-5497	purine nucleobases degradation II (anaerobic)
CL55_RS03570	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL55_RS03570	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL55_RS03575	PWY-5392	reductive TCA cycle II
CL55_RS03575	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CL55_RS03575	PWY-5690	TCA cycle II (plants and fungi)
CL55_RS03575	PWY-5913	TCA cycle VI (obligate autotrophs)
CL55_RS03575	PWY-6728	methylaspartate cycle
CL55_RS03575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS03575	PWY-7254	TCA cycle VII (acetate-producers)
CL55_RS03575	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL55_RS03580	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CL55_RS03580	PWY-7118	chitin degradation to ethanol
CL55_RS03615	PWY-1881	formate oxidation to CO<sub>2</sub>
CL55_RS03615	PWY-5497	purine nucleobases degradation II (anaerobic)
CL55_RS03615	PWY-6696	oxalate degradation III
CL55_RS03620	PWY-5316	nicotine biosynthesis
CL55_RS03620	PWY-7342	superpathway of nicotine biosynthesis
CL55_RS03625	PWY-5316	nicotine biosynthesis
CL55_RS03625	PWY-5381	pyridine nucleotide cycling (plants)
CL55_RS03625	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CL55_RS03625	PWY-7342	superpathway of nicotine biosynthesis
CL55_RS03630	PWY-5316	nicotine biosynthesis
CL55_RS03630	PWY-7342	superpathway of nicotine biosynthesis
CL55_RS03635	PWY-6749	CMP-legionaminate biosynthesis I
CL55_RS03640	PWY-3801	sucrose degradation II (sucrose synthase)
CL55_RS03640	PWY-5054	sorbitol biosynthesis I
CL55_RS03640	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CL55_RS03640	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CL55_RS03640	PWY-5659	GDP-mannose biosynthesis
CL55_RS03640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL55_RS03640	PWY-621	sucrose degradation III (sucrose invertase)
CL55_RS03640	PWY-622	starch biosynthesis
CL55_RS03640	PWY-6981	chitin biosynthesis
CL55_RS03640	PWY-6992	1,5-anhydrofructose degradation
CL55_RS03640	PWY-7238	sucrose biosynthesis II
CL55_RS03640	PWY-7347	sucrose biosynthesis III
CL55_RS03640	PWY-7385	1,3-propanediol biosynthesis (engineered)
CL55_RS03705	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CL55_RS03720	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS03795	PWY-5101	L-isoleucine biosynthesis II
CL55_RS03795	PWY-5103	L-isoleucine biosynthesis III
CL55_RS03795	PWY-5104	L-isoleucine biosynthesis IV
CL55_RS03795	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CL55_RS03795	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CL55_RS03795	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CL55_RS03795	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CL55_RS03800	PWY-5101	L-isoleucine biosynthesis II
CL55_RS03800	PWY-5103	L-isoleucine biosynthesis III
CL55_RS03800	PWY-5104	L-isoleucine biosynthesis IV
CL55_RS03800	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CL55_RS03800	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CL55_RS03800	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CL55_RS03800	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CL55_RS03805	PWY-5103	L-isoleucine biosynthesis III
CL55_RS03805	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CL55_RS03810	PWY-5669	phosphatidylethanolamine biosynthesis I
CL55_RS03815	PWY-5669	phosphatidylethanolamine biosynthesis I
CL55_RS03820	PWY-6871	3-methylbutanol biosynthesis
CL55_RS03850	PWY-1042	glycolysis IV (plant cytosol)
CL55_RS03850	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS03850	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL55_RS03850	PWY-7003	glycerol degradation to butanol
CL55_RS03925	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS03925	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CL55_RS03925	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CL55_RS03925	PWY-6692	Fe(II) oxidation
CL55_RS03945	PWY-5642	2,4-dinitrotoluene degradation
CL55_RS03945	PWY-6373	acrylate degradation
CL55_RS03990	PWY-5386	methylglyoxal degradation I
CL55_RS04000	PWY-3941	&beta;-alanine biosynthesis II
CL55_RS04000	PWY-5104	L-isoleucine biosynthesis IV
CL55_RS04000	PWY-5747	2-methylcitrate cycle II
CL55_RS04000	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CL55_RS04000	PWY-7118	chitin degradation to ethanol
CL55_RS04005	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS04005	PWY-5686	UMP biosynthesis
CL55_RS04005	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS04010	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS04010	PWY-5686	UMP biosynthesis
CL55_RS04010	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS04040	PWY-6614	tetrahydrofolate biosynthesis
CL55_RS04045	PWY-6749	CMP-legionaminate biosynthesis I
CL55_RS04110	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CL55_RS04110	PWY-5491	diethylphosphate degradation
CL55_RS04140	PWY-7039	phosphatidate metabolism, as a signaling molecule
CL55_RS04470	PWY-5669	phosphatidylethanolamine biosynthesis I
CL55_RS04545	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CL55_RS04545	PWY-5940	streptomycin biosynthesis
CL55_RS04550	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CL55_RS04680	PWY-7731	CL55_RS04680
CL55_RS04695	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CL55_RS04870	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CL55_RS04875	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CL55_RS04880	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CL55_RS04880	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CL55_RS04905	PWY-2941	L-lysine biosynthesis II
CL55_RS04905	PWY-2942	L-lysine biosynthesis III
CL55_RS04905	PWY-5097	L-lysine biosynthesis VI
CL55_RS04930	PWY-6936	seleno-amino acid biosynthesis
CL55_RS04930	PWY-7274	D-cycloserine biosynthesis
CL55_RS04935	PWY-6004	glycine betaine biosynthesis V (from glycine)
CL55_RS04940	PWY-2301	<i>myo</i>-inositol biosynthesis
CL55_RS04940	PWY-4702	phytate degradation I
CL55_RS04940	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CL55_RS04970	PWY-4381	fatty acid biosynthesis initiation I
CL55_RS04970	PWY-5743	3-hydroxypropanoate cycle
CL55_RS04970	PWY-5744	glyoxylate assimilation
CL55_RS04970	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL55_RS04970	PWY-6679	jadomycin biosynthesis
CL55_RS04970	PWY-6722	candicidin biosynthesis
CL55_RS04970	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CL55_RS04980	PWY-2941	L-lysine biosynthesis II
CL55_RS04980	PWY-2942	L-lysine biosynthesis III
CL55_RS04980	PWY-5097	L-lysine biosynthesis VI
CL55_RS04980	PWY-6559	spermidine biosynthesis II
CL55_RS04980	PWY-6562	norspermidine biosynthesis
CL55_RS04980	PWY-7153	grixazone biosynthesis
CL55_RS04990	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CL55_RS05025	PWY-6605	adenine and adenosine salvage II
CL55_RS05025	PWY-6610	adenine and adenosine salvage IV
CL55_RS05070	PWY-6910	hydroxymethylpyrimidine salvage
CL55_RS05070	PWY-7356	thiamin salvage IV (yeast)
CL55_RS05070	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CL55_RS05075	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CL55_RS05075	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CL55_RS05075	PWY-6897	thiamin salvage II
CL55_RS05075	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CL55_RS05075	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CL55_RS05075	PWY-7356	thiamin salvage IV (yeast)
CL55_RS05075	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CL55_RS05080	PWY-6891	thiazole biosynthesis II (Bacillus)
CL55_RS05080	PWY-6892	thiazole biosynthesis I (E. coli)
CL55_RS05095	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CL55_RS05180	PWY-4381	fatty acid biosynthesis initiation I
CL55_RS05180	PWY-5743	3-hydroxypropanoate cycle
CL55_RS05180	PWY-5744	glyoxylate assimilation
CL55_RS05180	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL55_RS05180	PWY-6679	jadomycin biosynthesis
CL55_RS05180	PWY-6722	candicidin biosynthesis
CL55_RS05180	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CL55_RS05195	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CL55_RS05195	PWY-5368	dimorphecolate biosynthesis
CL55_RS05195	PWY-5995	linoleate biosynthesis I (plants)
CL55_RS05195	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CL55_RS05195	PWY-6803	phosphatidylcholine acyl editing
CL55_RS05195	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CL55_RS05195	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CL55_RS05195	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CL55_RS05195	PWY-7470	phosphatidylcholine biosynthesis VII
CL55_RS05195	PWY-7618	ricinoleate biosynthesis
CL55_RS05215	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL55_RS05240	PWY-5676	acetyl-CoA fermentation to butanoate II
CL55_RS05240	PWY-5741	ethylmalonyl-CoA pathway
CL55_RS05240	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CL55_RS05270	PWY-7560	methylerythritol phosphate pathway II
CL55_RS05275	PWY-7560	methylerythritol phosphate pathway II
CL55_RS05325	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL55_RS05325	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL55_RS05325	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL55_RS05335	PWY-5747	2-methylcitrate cycle II
CL55_RS05340	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CL55_RS05340	PWY-7177	UTP and CTP dephosphorylation II
CL55_RS05340	PWY-7185	UTP and CTP dephosphorylation I
CL55_RS05345	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CL55_RS05345	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CL55_RS05350	PWY-1042	glycolysis IV (plant cytosol)
CL55_RS05350	PWY-1622	formaldehyde assimilation I (serine pathway)
CL55_RS05350	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CL55_RS05350	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS05350	PWY-5723	Rubisco shunt
CL55_RS05350	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL55_RS05350	PWY-6886	1-butanol autotrophic biosynthesis
CL55_RS05350	PWY-6901	superpathway of glucose and xylose degradation
CL55_RS05350	PWY-7003	glycerol degradation to butanol
CL55_RS05350	PWY-7124	ethylene biosynthesis V (engineered)
CL55_RS05350	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CL55_RS05365	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS05445	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL55_RS05445	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS05445	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS05445	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CL55_RS05445	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL55_RS05445	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL55_RS05495	PWY-5386	methylglyoxal degradation I
CL55_RS05525	PWY-5350	thiosulfate disproportionation III (rhodanese)
CL55_RS05635	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL55_RS05635	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL55_RS05635	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL55_RS05635	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CL55_RS05650	PWY-2161	folate polyglutamylation
CL55_RS05655	PWY-4381	fatty acid biosynthesis initiation I
CL55_RS05655	PWY-5743	3-hydroxypropanoate cycle
CL55_RS05655	PWY-5744	glyoxylate assimilation
CL55_RS05655	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL55_RS05655	PWY-6679	jadomycin biosynthesis
CL55_RS05655	PWY-6722	candicidin biosynthesis
CL55_RS05655	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CL55_RS05685	PWY-2941	L-lysine biosynthesis II
CL55_RS05685	PWY-2942	L-lysine biosynthesis III
CL55_RS05685	PWY-5097	L-lysine biosynthesis VI
CL55_RS05685	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS05685	PWY-6559	spermidine biosynthesis II
CL55_RS05685	PWY-6562	norspermidine biosynthesis
CL55_RS05685	PWY-7153	grixazone biosynthesis
CL55_RS05685	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS05690	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CL55_RS05720	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS05720	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CL55_RS05720	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CL55_RS05720	PWY-5690	TCA cycle II (plants and fungi)
CL55_RS05720	PWY-6728	methylaspartate cycle
CL55_RS05720	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS05720	PWY-7254	TCA cycle VII (acetate-producers)
CL55_RS05720	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL55_RS05725	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS05725	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CL55_RS05725	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CL55_RS05725	PWY-5690	TCA cycle II (plants and fungi)
CL55_RS05725	PWY-6728	methylaspartate cycle
CL55_RS05725	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS05725	PWY-7254	TCA cycle VII (acetate-producers)
CL55_RS05725	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL55_RS05745	PWY-1622	formaldehyde assimilation I (serine pathway)
CL55_RS05745	PWY-5392	reductive TCA cycle II
CL55_RS05745	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CL55_RS05745	PWY-5690	TCA cycle II (plants and fungi)
CL55_RS05745	PWY-5913	TCA cycle VI (obligate autotrophs)
CL55_RS05745	PWY-6728	methylaspartate cycle
CL55_RS05745	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS05745	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CL55_RS05745	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL55_RS05775	PWY-1361	benzoyl-CoA degradation I (aerobic)
CL55_RS05775	PWY-5109	2-methylbutanoate biosynthesis
CL55_RS05775	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CL55_RS05775	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CL55_RS05775	PWY-5177	glutaryl-CoA degradation
CL55_RS05775	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL55_RS05775	PWY-6435	4-hydroxybenzoate biosynthesis V
CL55_RS05775	PWY-6583	pyruvate fermentation to butanol I
CL55_RS05775	PWY-6863	pyruvate fermentation to hexanol
CL55_RS05775	PWY-6883	pyruvate fermentation to butanol II
CL55_RS05775	PWY-6944	androstenedione degradation
CL55_RS05775	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CL55_RS05775	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CL55_RS05775	PWY-7007	methyl ketone biosynthesis
CL55_RS05775	PWY-7046	4-coumarate degradation (anaerobic)
CL55_RS05775	PWY-7094	fatty acid salvage
CL55_RS05775	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CL55_RS05775	PWY-735	jasmonic acid biosynthesis
CL55_RS05775	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CL55_RS05775	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CL55_RS05775	PWY-7726	CL55_RS05775
CL55_RS05800	PWY-5958	acridone alkaloid biosynthesis
CL55_RS05800	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CL55_RS05800	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CL55_RS05820	PWY-5686	UMP biosynthesis
CL55_RS05845	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CL55_RS05845	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CL55_RS05855	PWY-6891	thiazole biosynthesis II (Bacillus)
CL55_RS05855	PWY-6892	thiazole biosynthesis I (E. coli)
CL55_RS05855	PWY-7560	methylerythritol phosphate pathway II
CL55_RS05870	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CL55_RS05870	PWY-2201	folate transformations I
CL55_RS05870	PWY-3841	folate transformations II
CL55_RS05870	PWY-5030	L-histidine degradation III
CL55_RS05870	PWY-5497	purine nucleobases degradation II (anaerobic)
CL55_RS05870	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CL55_RS05905	PWY-381	nitrate reduction II (assimilatory)
CL55_RS05905	PWY-5675	nitrate reduction V (assimilatory)
CL55_RS05905	PWY-6549	L-glutamine biosynthesis III
CL55_RS05905	PWY-6963	ammonia assimilation cycle I
CL55_RS05905	PWY-6964	ammonia assimilation cycle II
CL55_RS05940	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS05950	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CL55_RS05950	PWY-5723	Rubisco shunt
CL55_RS05955	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CL55_RS05955	PWY-5723	Rubisco shunt
CL55_RS06005	PWY-6728	methylaspartate cycle
CL55_RS06005	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS06005	PWY-7118	chitin degradation to ethanol
CL55_RS06005	PWY-7294	xylose degradation IV
CL55_RS06005	PWY-7295	L-arabinose degradation IV
CL55_RS06010	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS06065	PWY-2201	folate transformations I
CL55_RS06070	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL55_RS06070	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CL55_RS06070	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS06070	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS06070	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CL55_RS06070	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL55_RS06070	PWY-7205	CMP phosphorylation
CL55_RS06070	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL55_RS06070	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS06070	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS06070	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS06070	PWY-7224	purine deoxyribonucleosides salvage
CL55_RS06070	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS06070	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CL55_RS06105	PWY-5381	pyridine nucleotide cycling (plants)
CL55_RS06105	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CL55_RS06105	PWY-6596	adenosine nucleotides degradation I
CL55_RS06105	PWY-6606	guanosine nucleotides degradation II
CL55_RS06105	PWY-6607	guanosine nucleotides degradation I
CL55_RS06105	PWY-6608	guanosine nucleotides degradation III
CL55_RS06105	PWY-7185	UTP and CTP dephosphorylation I
CL55_RS06275	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS06370	PWY-5331	taurine biosynthesis
CL55_RS06450	PWY-6832	2-aminoethylphosphonate degradation II
CL55_RS06495	PWY-6854	ethylene biosynthesis III (microbes)
CL55_RS06715	PWY-6891	thiazole biosynthesis II (Bacillus)
CL55_RS06715	PWY-6892	thiazole biosynthesis I (E. coli)
CL55_RS06715	PWY-7560	methylerythritol phosphate pathway II
CL55_RS06720	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS06785	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06785	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06790	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06790	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06795	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06795	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06800	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06800	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06805	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06805	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06855	PWY-101	photosynthesis light reactions
CL55_RS06860	PWY-101	photosynthesis light reactions
CL55_RS06875	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
CL55_RS06875	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06875	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06880	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
CL55_RS06880	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06880	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06885	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
CL55_RS06915	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CL55_RS06915	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CL55_RS06950	PWY-6703	preQ<sub>0</sub> biosynthesis
CL55_RS07015	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS07020	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CL55_RS07020	PWY-6596	adenosine nucleotides degradation I
CL55_RS07020	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS07040	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS07060	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CL55_RS07060	PWY-622	starch biosynthesis
CL55_RS07070	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CL55_RS07070	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CL55_RS07070	PWY-5989	stearate biosynthesis II (bacteria and plants)
CL55_RS07070	PWY-5994	palmitate biosynthesis I (animals and fungi)
CL55_RS07070	PWY-6113	superpathway of mycolate biosynthesis
CL55_RS07070	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CL55_RS07070	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CL55_RS07070	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CL55_RS07070	PWY-7663	gondoate biosynthesis (anaerobic)
CL55_RS07070	PWY-7664	oleate biosynthesis IV (anaerobic)
CL55_RS07070	PWYG-321	mycolate biosynthesis
CL55_RS07095	PWY-7294	xylose degradation IV
CL55_RS07095	PWY-7295	L-arabinose degradation IV
CL55_RS07095	PWY-7560	methylerythritol phosphate pathway II
CL55_RS07100	PWY-5667	CDP-diacylglycerol biosynthesis I
CL55_RS07100	PWY-5981	CDP-diacylglycerol biosynthesis III
CL55_RS07260	PWY-6825	phosphatidylcholine biosynthesis V
CL55_RS07335	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS07335	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CL55_RS07335	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CL55_RS07335	PWY-5690	TCA cycle II (plants and fungi)
CL55_RS07335	PWY-6728	methylaspartate cycle
CL55_RS07335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS07335	PWY-7254	TCA cycle VII (acetate-producers)
CL55_RS07335	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL55_RS07380	PWY-6823	molybdenum cofactor biosynthesis
CL55_RS07380	PWY-6891	thiazole biosynthesis II (Bacillus)
CL55_RS07380	PWY-6892	thiazole biosynthesis I (E. coli)
CL55_RS07380	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CL55_RS07395	PWY-5913	TCA cycle VI (obligate autotrophs)
CL55_RS07395	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CL55_RS07395	PWY-6638	sulfolactate degradation III
CL55_RS07395	PWY-6642	(<i>R</i>)-cysteate degradation
CL55_RS07395	PWY-6643	coenzyme M biosynthesis II
CL55_RS07395	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CL55_RS07395	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CL55_RS07395	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL55_RS07430	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS07495	PWY-6823	molybdenum cofactor biosynthesis
CL55_RS07505	PWY-6823	molybdenum cofactor biosynthesis
CL55_RS07625	PWY-5269	cardiolipin biosynthesis II
CL55_RS07625	PWY-5668	cardiolipin biosynthesis I
CL55_RS07645	PWY-6902	chitin degradation II
CL55_RS07650	PWY-6012	acyl carrier protein metabolism I
CL55_RS07650	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CL55_RS07700	PWY-5367	petroselinate biosynthesis
CL55_RS07700	PWY-5515	L-arabinose degradation II
CL55_RS07700	PWY-5525	D-glucuronate degradation I
CL55_RS07700	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CL55_RS07700	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CL55_RS07700	PWY-5989	stearate biosynthesis II (bacteria and plants)
CL55_RS07700	PWY-5994	palmitate biosynthesis I (animals and fungi)
CL55_RS07700	PWY-6113	superpathway of mycolate biosynthesis
CL55_RS07700	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CL55_RS07700	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CL55_RS07700	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CL55_RS07700	PWY-7663	gondoate biosynthesis (anaerobic)
CL55_RS07700	PWY-7664	oleate biosynthesis IV (anaerobic)
CL55_RS07700	PWYG-321	mycolate biosynthesis
CL55_RS07705	PWY-4381	fatty acid biosynthesis initiation I
CL55_RS07705	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CL55_RS07705	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CL55_RS07710	PWY-4381	fatty acid biosynthesis initiation I
CL55_RS07760	PWY-6823	molybdenum cofactor biosynthesis
CL55_RS07765	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CL55_RS07765	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
CL55_RS07770	PWY-6823	molybdenum cofactor biosynthesis
CL55_RS07805	PWY-6654	phosphopantothenate biosynthesis III
CL55_RS07815	PWY-101	photosynthesis light reactions
CL55_RS07815	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CL55_RS07820	PWY-3841	folate transformations II
CL55_RS07820	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS07820	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS07820	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL55_RS07820	PWY-7199	pyrimidine deoxyribonucleosides salvage
CL55_RS07820	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL55_RS07825	PWY-3841	folate transformations II
CL55_RS07825	PWY-6614	tetrahydrofolate biosynthesis
CL55_RS07880	PWY-6829	tRNA methylation (yeast)
CL55_RS07880	PWY-7285	methylwyosine biosynthesis
CL55_RS07880	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL55_RS07935	PWY-6936	seleno-amino acid biosynthesis
CL55_RS07970	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CL55_RS07990	PWY-7205	CMP phosphorylation
CL55_RS07995	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CL55_RS08000	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CL55_RS08010	PWY-3461	L-tyrosine biosynthesis II
CL55_RS08010	PWY-3462	L-phenylalanine biosynthesis II
CL55_RS08010	PWY-6120	L-tyrosine biosynthesis III
CL55_RS08010	PWY-6627	salinosporamide A biosynthesis
CL55_RS08010	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CL55_RS08010	PWY-7626	bacilysin biosynthesis
CL55_RS08030	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CL55_RS08030	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CL55_RS08030	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CL55_RS08030	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CL55_RS08030	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CL55_RS08030	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CL55_RS08030	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CL55_RS08030	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CL55_RS08030	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CL55_RS08030	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CL55_RS08035	PWY-181	photorespiration
CL55_RS08040	PWY-5101	L-isoleucine biosynthesis II
CL55_RS08040	PWY-5103	L-isoleucine biosynthesis III
CL55_RS08040	PWY-5104	L-isoleucine biosynthesis IV
CL55_RS08040	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CL55_RS08120	PWY-1361	benzoyl-CoA degradation I (aerobic)
CL55_RS08120	PWY-5109	2-methylbutanoate biosynthesis
CL55_RS08120	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CL55_RS08120	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CL55_RS08120	PWY-5177	glutaryl-CoA degradation
CL55_RS08120	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL55_RS08120	PWY-6435	4-hydroxybenzoate biosynthesis V
CL55_RS08120	PWY-6583	pyruvate fermentation to butanol I
CL55_RS08120	PWY-6863	pyruvate fermentation to hexanol
CL55_RS08120	PWY-6883	pyruvate fermentation to butanol II
CL55_RS08120	PWY-6944	androstenedione degradation
CL55_RS08120	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CL55_RS08120	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CL55_RS08120	PWY-7007	methyl ketone biosynthesis
CL55_RS08120	PWY-7046	4-coumarate degradation (anaerobic)
CL55_RS08120	PWY-7094	fatty acid salvage
CL55_RS08120	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CL55_RS08120	PWY-735	jasmonic acid biosynthesis
CL55_RS08120	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CL55_RS08120	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CL55_RS08120	PWY-7726	CL55_RS08120
CL55_RS08145	PWY-1042	glycolysis IV (plant cytosol)
CL55_RS08145	PWY-1622	formaldehyde assimilation I (serine pathway)
CL55_RS08145	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CL55_RS08145	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS08145	PWY-5723	Rubisco shunt
CL55_RS08145	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL55_RS08145	PWY-6886	1-butanol autotrophic biosynthesis
CL55_RS08145	PWY-6901	superpathway of glucose and xylose degradation
CL55_RS08145	PWY-7003	glycerol degradation to butanol
CL55_RS08145	PWY-7124	ethylene biosynthesis V (engineered)
CL55_RS08145	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CL55_RS08205	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS08205	PWY-4521	arsenite oxidation I (respiratory)
CL55_RS08205	PWY-6692	Fe(II) oxidation
CL55_RS08205	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL55_RS08210	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS08210	PWY-4521	arsenite oxidation I (respiratory)
CL55_RS08210	PWY-6692	Fe(II) oxidation
CL55_RS08210	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL55_RS08380	PWY-6857	retinol biosynthesis
CL55_RS08565	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CL55_RS08565	PWY-5368	dimorphecolate biosynthesis
CL55_RS08565	PWY-5995	linoleate biosynthesis I (plants)
CL55_RS08565	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CL55_RS08565	PWY-6803	phosphatidylcholine acyl editing
CL55_RS08565	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CL55_RS08565	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CL55_RS08565	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CL55_RS08565	PWY-7470	phosphatidylcholine biosynthesis VII
CL55_RS08565	PWY-7618	ricinoleate biosynthesis
CL55_RS08570	PWY-5663	tetrahydrobiopterin biosynthesis I
CL55_RS08570	PWY-5664	tetrahydrobiopterin biosynthesis II
CL55_RS08570	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL55_RS08570	PWY-6703	preQ<sub>0</sub> biosynthesis
CL55_RS08570	PWY-6983	tetrahydrobiopterin biosynthesis III
CL55_RS08570	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CL55_RS08575	PWY-6891	thiazole biosynthesis II (Bacillus)
CL55_RS08575	PWY-6892	thiazole biosynthesis I (E. coli)
CL55_RS08575	PWY-7560	methylerythritol phosphate pathway II
CL55_RS08595	PWY-5350	thiosulfate disproportionation III (rhodanese)
CL55_RS08620	PWY-702	L-methionine biosynthesis II
CL55_RS08640	PWY-3801	sucrose degradation II (sucrose synthase)
CL55_RS08640	PWY-6527	stachyose degradation
CL55_RS08640	PWY-7238	sucrose biosynthesis II
CL55_RS08640	PWY-7343	UDP-glucose biosynthesis
CL55_RS08665	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL55_RS08715	PWY-6825	phosphatidylcholine biosynthesis V
CL55_RS08720	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL55_RS08720	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CL55_RS08725	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CL55_RS08725	PWY-6167	flavin biosynthesis II (archaea)
CL55_RS08725	PWY-6168	flavin biosynthesis III (fungi)
CL55_RS08745	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL55_RS08745	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL55_RS08745	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL55_RS08745	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CL55_RS08775	PWY-4983	L-citrulline-nitric oxide cycle
CL55_RS08775	PWY-4984	urea cycle
CL55_RS08775	PWY-5	canavanine biosynthesis
CL55_RS08775	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS08775	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS08780	PWY-4981	L-proline biosynthesis II (from arginine)
CL55_RS08780	PWY-4984	urea cycle
CL55_RS08780	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS08805	PWY-2781	<i>cis</i>-zeatin biosynthesis
CL55_RS08810	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL55_RS08810	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL55_RS08810	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL55_RS08835	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL55_RS08835	PWY-6148	tetrahydromethanopterin biosynthesis
CL55_RS08835	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CL55_RS08835	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CL55_RS08840	PWY-6654	phosphopantothenate biosynthesis III
CL55_RS08870	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CL55_RS08870	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CL55_RS08870	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CL55_RS08900	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CL55_RS08900	PWY-6164	3-dehydroquinate biosynthesis I
CL55_RS08900	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CL55_RS08905	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CL55_RS08905	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CL55_RS08905	PWY-6268	adenosylcobalamin salvage from cobalamin
CL55_RS08905	PWY-6269	adenosylcobalamin salvage from cobinamide II
CL55_RS08925	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL55_RS08930	PWY-3341	L-proline biosynthesis III
CL55_RS08930	PWY-4981	L-proline biosynthesis II (from arginine)
CL55_RS08930	PWY-6344	L-ornithine degradation II (Stickland reaction)
CL55_RS08945	PWY-6700	queuosine biosynthesis
CL55_RS08950	PWY-6700	queuosine biosynthesis
CL55_RS08970	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
CL55_RS08975	PWY-6123	inosine-5'-phosphate biosynthesis I
CL55_RS08975	PWY-6124	inosine-5'-phosphate biosynthesis II
CL55_RS08975	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL55_RS08975	PWY-7234	inosine-5'-phosphate biosynthesis III
CL55_RS09045	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CL55_RS09045	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CL55_RS09060	PWY-6123	inosine-5'-phosphate biosynthesis I
CL55_RS09060	PWY-7234	inosine-5'-phosphate biosynthesis III
CL55_RS09065	PWY-6123	inosine-5'-phosphate biosynthesis I
CL55_RS09065	PWY-6124	inosine-5'-phosphate biosynthesis II
CL55_RS09065	PWY-7234	inosine-5'-phosphate biosynthesis III
CL55_RS09070	PWY-1042	glycolysis IV (plant cytosol)
CL55_RS09070	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CL55_RS09070	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS09070	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL55_RS09070	PWY-7385	1,3-propanediol biosynthesis (engineered)
CL55_RS09075	PWY-1042	glycolysis IV (plant cytosol)
CL55_RS09075	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CL55_RS09075	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS09075	PWY-5723	Rubisco shunt
CL55_RS09075	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL55_RS09075	PWY-6886	1-butanol autotrophic biosynthesis
CL55_RS09075	PWY-6901	superpathway of glucose and xylose degradation
CL55_RS09075	PWY-7003	glycerol degradation to butanol
CL55_RS09075	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CL55_RS09075	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL55_RS09080	PWY-1042	glycolysis IV (plant cytosol)
CL55_RS09080	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS09080	PWY-6886	1-butanol autotrophic biosynthesis
CL55_RS09080	PWY-6901	superpathway of glucose and xylose degradation
CL55_RS09080	PWY-7003	glycerol degradation to butanol
CL55_RS09085	PWY-5057	L-valine degradation II
CL55_RS09085	PWY-5076	L-leucine degradation III
CL55_RS09085	PWY-5078	L-isoleucine degradation II
CL55_RS09085	PWY-5101	L-isoleucine biosynthesis II
CL55_RS09085	PWY-5103	L-isoleucine biosynthesis III
CL55_RS09085	PWY-5104	L-isoleucine biosynthesis IV
CL55_RS09085	PWY-5108	L-isoleucine biosynthesis V
CL55_RS09130	PWY-5392	reductive TCA cycle II
CL55_RS09130	PWY-5537	pyruvate fermentation to acetate V
CL55_RS09130	PWY-5538	pyruvate fermentation to acetate VI
CL55_RS09130	PWY-5690	TCA cycle II (plants and fungi)
CL55_RS09130	PWY-5913	TCA cycle VI (obligate autotrophs)
CL55_RS09130	PWY-6728	methylaspartate cycle
CL55_RS09130	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS09130	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL55_RS09135	PWY-5392	reductive TCA cycle II
CL55_RS09135	PWY-5537	pyruvate fermentation to acetate V
CL55_RS09135	PWY-5538	pyruvate fermentation to acetate VI
CL55_RS09135	PWY-5690	TCA cycle II (plants and fungi)
CL55_RS09135	PWY-5913	TCA cycle VI (obligate autotrophs)
CL55_RS09135	PWY-6728	methylaspartate cycle
CL55_RS09135	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL55_RS09135	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL55_RS09230	PWY-4041	&gamma;-glutamyl cycle
CL55_RS09230	PWY-5826	hypoglycin biosynthesis
CL55_RS09245	PWY-6654	phosphopantothenate biosynthesis III
CL55_RS09355	PWY-7294	xylose degradation IV
CL55_RS09355	PWY-7295	L-arabinose degradation IV
CL55_RS09400	PWY-6123	inosine-5'-phosphate biosynthesis I
CL55_RS09400	PWY-6124	inosine-5'-phosphate biosynthesis II
CL55_RS09400	PWY-7234	inosine-5'-phosphate biosynthesis III
CL55_RS09435	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS09435	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS09455	PWY-5686	UMP biosynthesis
CL55_RS09470	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL55_RS09500	PWY-5839	menaquinol-7 biosynthesis
CL55_RS09500	PWY-5844	menaquinol-9 biosynthesis
CL55_RS09500	PWY-5849	menaquinol-6 biosynthesis
CL55_RS09500	PWY-5890	menaquinol-10 biosynthesis
CL55_RS09500	PWY-5891	menaquinol-11 biosynthesis
CL55_RS09500	PWY-5892	menaquinol-12 biosynthesis
CL55_RS09500	PWY-5895	menaquinol-13 biosynthesis
CL55_RS09520	PWY-5381	pyridine nucleotide cycling (plants)
CL55_RS09520	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CL55_RS09520	PWY-6596	adenosine nucleotides degradation I
CL55_RS09520	PWY-6606	guanosine nucleotides degradation II
CL55_RS09520	PWY-6607	guanosine nucleotides degradation I
CL55_RS09520	PWY-6608	guanosine nucleotides degradation III
CL55_RS09520	PWY-7185	UTP and CTP dephosphorylation I
CL55_RS09525	PWY-6700	queuosine biosynthesis
CL55_RS09555	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CL55_RS09555	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CL55_RS09610	PWY-7560	methylerythritol phosphate pathway II
CL55_RS09630	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CL55_RS09645	PWY-6825	phosphatidylcholine biosynthesis V
CL55_RS09715	PWY-3781	aerobic respiration I (cytochrome c)
CL55_RS09715	PWY-4521	arsenite oxidation I (respiratory)
CL55_RS09715	PWY-6692	Fe(II) oxidation
CL55_RS09715	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL55_RS09735	PWY-6004	glycine betaine biosynthesis V (from glycine)
CL55_RS09740	PWY-5667	CDP-diacylglycerol biosynthesis I
CL55_RS09740	PWY-5981	CDP-diacylglycerol biosynthesis III
CL55_RS09760	PWY-1622	formaldehyde assimilation I (serine pathway)
CL55_RS09760	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL55_RS09825	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CL55_RS09825	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CL55_RS09830	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CL55_RS09830	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CL55_RS09860	PWY-3961	phosphopantothenate biosynthesis II
CL55_RS09915	PWY-2201	folate transformations I
CL55_RS09915	PWY-3841	folate transformations II
CL55_RS09975	PWY-6749	CMP-legionaminate biosynthesis I
CL55_RS09980	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CL55_RS09980	PWY-5667	CDP-diacylglycerol biosynthesis I
CL55_RS09980	PWY-6453	stigma estolide biosynthesis
CL55_RS09980	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CL55_RS09980	PWY-7587	oleate biosynthesis III (cyanobacteria)
CL55_RS09990	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL55_RS09990	PWY-6148	tetrahydromethanopterin biosynthesis
CL55_RS09990	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CL55_RS09990	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CL55_RS10025	PWY-2201	folate transformations I
CL55_RS10025	PWY-3841	folate transformations II
CL55_RS10030	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CL55_RS10035	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CL55_RS10035	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CL55_RS10050	PWY-2941	L-lysine biosynthesis II
CL55_RS10050	PWY-5097	L-lysine biosynthesis VI
CL55_RS10055	PWY-5686	UMP biosynthesis
CL55_RS10075	PWY-5344	L-homocysteine biosynthesis
CL55_RS10085	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL55_RS10085	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL55_RS10115	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CL55_RS10170	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CL55_RS10170	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL55_RS10170	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CL55_RS10170	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CL55_RS10245	PWY-7425	2-chloroacrylate degradation I
CL55_RS10345	PWY-6825	phosphatidylcholine biosynthesis V
CL55_RS10370	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL55_RS10445	PWY-7255	ergothioneine biosynthesis I (bacteria)
