locus-tag class description C3B54_RS00005 PF18374 Enolase N-terminal domain-like C3B54_RS00005 PF13378 Enolase C-terminal domain-like C3B54_RS00010 PF01578 Cytochrome C assembly protein C3B54_RS00020 PF02683 Cytochrome C biogenesis protein transmembrane region C3B54_RS00025 PF00085 Thioredoxin C3B54_RS00035 PF01925 Sulfite exporter TauE/SafE C3B54_RS00040 PF01507 Phosphoadenosine phosphosulfate reductase family C3B54_RS00045 PF00009 Elongation factor Tu GTP binding domain C3B54_RS00060 PF13452 N-terminal half of MaoC dehydratase C3B54_RS00070 PF01565 FAD binding domain C3B54_RS00070 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C3B54_RS00075 PF00155 Aminotransferase class I and II C3B54_RS00080 PF01336 OB-fold nucleic acid binding domain C3B54_RS00080 PF00152 tRNA synthetases class II (D, K and N) C3B54_RS00140 PF18073 Rubredoxin metal binding domain C3B54_RS00140 PF06745 KaiC C3B54_RS00155 PF00583 Acetyltransferase (GNAT) family C3B54_RS00160 PF02861 Clp amino terminal domain, pathogenicity island component C3B54_RS00160 PF17871 AAA lid domain C3B54_RS00160 PF00004 ATPase family associated with various cellular activities (AAA) C3B54_RS00160 PF10431 C-terminal, D2-small domain, of ClpB protein C3B54_RS00160 PF07724 AAA domain (Cdc48 subfamily) C3B54_RS00170 PF02678 Pirin C3B54_RS00170 PF05726 Pirin C-terminal cupin domain C3B54_RS00180 PF01757 Acyltransferase family C3B54_RS00185 PF01336 OB-fold nucleic acid binding domain C3B54_RS00185 PF00152 tRNA synthetases class II (D, K and N) C3B54_RS00190 PF02569 Pantoate-beta-alanine ligase C3B54_RS00215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C3B54_RS00220 PF02152 Dihydroneopterin aldolase C3B54_RS00225 PF00809 Pterin binding enzyme C3B54_RS00230 PF01227 GTP cyclohydrolase I C3B54_RS00235 PF01434 Peptidase family M41 C3B54_RS00235 PF00004 ATPase family associated with various cellular activities (AAA) C3B54_RS00235 PF17862 AAA+ lid domain C3B54_RS00240 PF00156 Phosphoribosyl transferase domain C3B54_RS00245 PF01171 PP-loop family C3B54_RS00245 PF09179 TilS substrate binding domain C3B54_RS00250 PF00719 Inorganic pyrophosphatase C3B54_RS00255 PF10145 Phage-related minor tail protein C3B54_RS00255 PF01551 Peptidase family M23 C3B54_RS00255 PF01464 Transglycosylase SLT domain C3B54_RS00300 PF01593 Flavin containing amine oxidoreductase C3B54_RS00305 PF01040 UbiA prenyltransferase family C3B54_RS00310 PF00072 Response regulator receiver domain C3B54_RS00310 PF00196 Bacterial regulatory proteins, luxR family C3B54_RS00315 PF00106 short chain dehydrogenase C3B54_RS00320 PF02233 NAD(P) transhydrogenase beta subunit C3B54_RS00325 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C3B54_RS00330 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C3B54_RS00330 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C3B54_RS00355 PF00085 Thioredoxin C3B54_RS00360 PF01553 Acyltransferase C3B54_RS00360 PF00501 AMP-binding enzyme C3B54_RS00365 PF00132 Bacterial transferase hexapeptide (six repeats) C3B54_RS00370 PF00291 Pyridoxal-phosphate dependent enzyme C3B54_RS00390 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C3B54_RS00405 PF00586 AIR synthase related protein, N-terminal domain C3B54_RS00405 PF02769 AIR synthase related protein, C-terminal domain C3B54_RS00415 PF00156 Phosphoribosyl transferase domain C3B54_RS00430 PF02843 Phosphoribosylglycinamide synthetase, C domain C3B54_RS00430 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C3B54_RS00430 PF02844 Phosphoribosylglycinamide synthetase, N domain C3B54_RS00435 PF01259 SAICAR synthetase C3B54_RS00460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C3B54_RS00460 PF02769 AIR synthase related protein, C-terminal domain C3B54_RS00460 PF00586 AIR synthase related protein, N-terminal domain C3B54_RS00470 PF02153 Prephenate dehydrogenase C3B54_RS00470 PF01817 Chorismate mutase type II C3B54_RS00475 PF00709 Adenylosuccinate synthetase C3B54_RS00490 PF00156 Phosphoribosyl transferase domain C3B54_RS00505 PF01212 Beta-eliminating lyase C3B54_RS00515 PF02861 Clp amino terminal domain, pathogenicity island component C3B54_RS00515 PF10431 C-terminal, D2-small domain, of ClpB protein C3B54_RS00515 PF17871 AAA lid domain C3B54_RS00515 PF07724 AAA domain (Cdc48 subfamily) C3B54_RS00515 PF00004 ATPase family associated with various cellular activities (AAA) C3B54_RS00520 PF13411 MerR HTH family regulatory protein C3B54_RS00525 PF00226 DnaJ domain C3B54_RS00525 PF01556 DnaJ C terminal domain C3B54_RS00525 PF00684 DnaJ central domain C3B54_RS00530 PF01025 GrpE C3B54_RS00535 PF00012 Hsp70 protein C3B54_RS00545 PF01040 UbiA prenyltransferase family C3B54_RS00550 PF01040 UbiA prenyltransferase family C3B54_RS00560 PF01593 Flavin containing amine oxidoreductase C3B54_RS00570 PF00293 NUDIX domain C3B54_RS00575 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) C3B54_RS00585 PF05970 PIF1-like helicase C3B54_RS00600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C3B54_RS00600 PF02896 PEP-utilising enzyme, TIM barrel domain C3B54_RS00600 PF00391 PEP-utilising enzyme, mobile domain C3B54_RS00605 PF03618 Kinase/pyrophosphorylase C3B54_RS00610 PF08240 Alcohol dehydrogenase GroES-like domain C3B54_RS00610 PF00107 Zinc-binding dehydrogenase C3B54_RS00630 PF00583 Acetyltransferase (GNAT) family C3B54_RS00655 PF03989 DNA gyrase C-terminal domain, beta-propeller C3B54_RS00655 PF00521 DNA gyrase/topoisomerase IV, subunit A C3B54_RS00660 PF01751 Toprim domain C3B54_RS00660 PF00204 DNA gyrase B C3B54_RS00660 PF00986 DNA gyrase B subunit, carboxyl terminus C3B54_RS00660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS00665 PF05258 Dna[CI] antecedent, DciA C3B54_RS00670 PF02463 RecF/RecN/SMC N terminal domain C3B54_RS00675 PF02768 DNA polymerase III beta subunit, C-terminal domain C3B54_RS00675 PF02767 DNA polymerase III beta subunit, central domain C3B54_RS00675 PF00712 DNA polymerase III beta subunit, N-terminal domain C3B54_RS00680 PF08299 Bacterial dnaA protein helix-turn-helix C3B54_RS00680 PF00308 Bacterial dnaA protein C3B54_RS00685 PF00468 Ribosomal protein L34 C3B54_RS00690 PF00825 Ribonuclease P C3B54_RS00695 PF01809 Putative membrane protein insertion efficiency factor C3B54_RS00700 PF02096 60Kd inner membrane protein C3B54_RS00710 PF02527 rRNA small subunit methyltransferase G C3B54_RS00715 PF13614 AAA domain C3B54_RS00720 PF02195 ParB-like nuclease domain C3B54_RS00720 PF17762 HTH domain found in ParB protein C3B54_RS00725 PF07478 D-ala D-ala ligase C-terminus C3B54_RS00725 PF01820 D-ala D-ala ligase N-terminus C3B54_RS00730 PF00155 Aminotransferase class I and II C3B54_RS00735 PF00085 Thioredoxin C3B54_RS00740 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3B54_RS00755 PF01743 Poly A polymerase head domain C3B54_RS00755 PF12627 Probable RNA and SrmB- binding site of polymerase A C3B54_RS00755 PF13735 tRNA nucleotidyltransferase domain 2 putative C3B54_RS00760 PF01250 Ribosomal protein S6 C3B54_RS00765 PF00436 Single-strand binding protein family C3B54_RS00770 PF01084 Ribosomal protein S18 C3B54_RS00775 PF01281 Ribosomal protein L9, N-terminal domain C3B54_RS00775 PF03948 Ribosomal protein L9, C-terminal domain C3B54_RS00780 PF03796 DnaB-like helicase C terminal domain C3B54_RS00780 PF00772 DnaB-like helicase N terminal domain C3B54_RS00795 PF02348 Cytidylyltransferase C3B54_RS00800 PF00571 CBS domain C3B54_RS00800 PF01380 SIS domain C3B54_RS00805 PF00793 DAHP synthetase I family C3B54_RS00840 PF00206 Lyase C3B54_RS00840 PF08328 Adenylosuccinate lyase C-terminal C3B54_RS00845 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS00845 PF00072 Response regulator receiver domain C3B54_RS00850 PF00512 His Kinase A (phospho-acceptor) domain C3B54_RS00850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS00850 PF00672 HAMP domain C3B54_RS00870 PF00676 Dehydrogenase E1 component C3B54_RS00875 PF02780 Transketolase, C-terminal domain C3B54_RS00875 PF02779 Transketolase, pyrimidine binding domain C3B54_RS00880 PF02817 e3 binding domain C3B54_RS00880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3B54_RS00880 PF00364 Biotin-requiring enzyme C3B54_RS00885 PF01297 Zinc-uptake complex component A periplasmic C3B54_RS00890 PF00950 ABC 3 transport family C3B54_RS00895 PF00005 ABC transporter C3B54_RS00905 PF00830 Ribosomal L28 family C3B54_RS00910 PF00471 Ribosomal protein L33 C3B54_RS00915 PF00253 Ribosomal protein S14p/S29e C3B54_RS00920 PF00216 Bacterial DNA-binding protein C3B54_RS00935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3B54_RS00940 PF01694 Rhomboid family C3B54_RS00945 PF06781 Cell division protein CrgA C3B54_RS00955 PF00117 Glutamine amidotransferase class-I C3B54_RS00960 PF03793 PASTA domain C3B54_RS00960 PF00069 Protein kinase domain C3B54_RS00965 PF00069 Protein kinase domain C3B54_RS00970 PF00905 Penicillin binding protein transpeptidase domain C3B54_RS00975 PF01098 Cell cycle protein C3B54_RS01000 PF02661 Fic/DOC family C3B54_RS01000 PF13784 Fic/DOC family N-terminal C3B54_RS01005 PF00171 Aldehyde dehydrogenase family C3B54_RS01010 PF00403 Heavy-metal-associated domain C3B54_RS01015 PF00403 Heavy-metal-associated domain C3B54_RS01025 PF13419 Haloacid dehalogenase-like hydrolase C3B54_RS01030 PF01939 Endonuclease NucS C3B54_RS01035 PF07690 Major Facilitator Superfamily C3B54_RS01040 PF01554 MatE C3B54_RS01045 PF01431 Peptidase family M13 C3B54_RS01045 PF05649 Peptidase family M13 C3B54_RS01065 PF00365 Phosphofructokinase C3B54_RS01080 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C3B54_RS01080 PF01619 Proline dehydrogenase C3B54_RS01080 PF14850 DNA-binding domain of Proline dehydrogenase C3B54_RS01080 PF00171 Aldehyde dehydrogenase family C3B54_RS01095 PF00202 Aminotransferase class-III C3B54_RS01105 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS01110 PF08402 TOBE domain C3B54_RS01110 PF00005 ABC transporter C3B54_RS01115 PF02770 Acyl-CoA dehydrogenase, middle domain C3B54_RS01115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3B54_RS01115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3B54_RS01120 PF12146 Serine aminopeptidase, S33 C3B54_RS01125 PF03099 Biotin/lipoate A/B protein ligase family C3B54_RS01125 PF10437 Bacterial lipoate protein ligase C-terminus C3B54_RS01130 PF01032 FecCD transport family C3B54_RS01135 PF00005 ABC transporter C3B54_RS01145 PF00155 Aminotransferase class I and II C3B54_RS01150 PF00800 Prephenate dehydratase C3B54_RS01150 PF01842 ACT domain C3B54_RS01155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3B54_RS01155 PF02403 Seryl-tRNA synthetase N-terminal domain C3B54_RS01170 PF03816 Cell envelope-related transcriptional attenuator domain C3B54_RS01180 PF00440 Bacterial regulatory proteins, tetR family C3B54_RS01180 PF02909 Tetracyclin repressor-like, C-terminal domain C3B54_RS01210 PF06480 FtsH Extracellular C3B54_RS01210 PF01434 Peptidase family M41 C3B54_RS01210 PF17862 AAA+ lid domain C3B54_RS01210 PF00004 ATPase family associated with various cellular activities (AAA) C3B54_RS01215 PF07995 Glucose / Sorbosone dehydrogenase C3B54_RS01225 PF00005 ABC transporter C3B54_RS01225 PF13732 Domain of unknown function (DUF4162) C3B54_RS01230 PF01061 ABC-2 type transporter C3B54_RS01275 PF01740 STAS domain C3B54_RS01275 PF00916 Sulfate permease family C3B54_RS01285 PF00141 Peroxidase C3B54_RS01290 PF03458 UPF0126 domain C3B54_RS01305 PF00730 HhH-GPD superfamily base excision DNA repair protein C3B54_RS01310 PF13350 Tyrosine phosphatase family C3B54_RS01315 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS01320 PF00005 ABC transporter C3B54_RS01320 PF00571 CBS domain C3B54_RS01325 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS01355 PF07722 Peptidase C26 C3B54_RS01360 PF16363 GDP-mannose 4,6 dehydratase C3B54_RS01370 PF12849 PBP superfamily domain C3B54_RS01375 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS01380 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS01385 PF00005 ABC transporter C3B54_RS01390 PF00266 Aminotransferase class-V C3B54_RS01400 PF04227 Indigoidine synthase A like protein C3B54_RS01410 PF03441 FAD binding domain of DNA photolyase C3B54_RS01410 PF00875 DNA photolyase C3B54_RS01415 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS01415 PF00072 Response regulator receiver domain C3B54_RS01425 PF14437 MafB19-like deaminase C3B54_RS01440 PF14748 Pyrroline-5-carboxylate reductase dimerisation C3B54_RS01440 PF03807 NADP oxidoreductase coenzyme F420-dependent C3B54_RS01445 PF02080 TrkA-C domain C3B54_RS01445 PF02254 TrkA-N domain C3B54_RS01450 PF02386 Cation transport protein C3B54_RS01455 PF01022 Bacterial regulatory protein, arsR family C3B54_RS01460 PF12728 Helix-turn-helix domain C3B54_RS01500 PF04560 RNA polymerase Rpb2, domain 7 C3B54_RS01500 PF04563 RNA polymerase beta subunit C3B54_RS01500 PF04561 RNA polymerase Rpb2, domain 2 C3B54_RS01500 PF04565 RNA polymerase Rpb2, domain 3 C3B54_RS01500 PF10385 RNA polymerase beta subunit external 1 domain C3B54_RS01500 PF00562 RNA polymerase Rpb2, domain 6 C3B54_RS01505 PF04998 RNA polymerase Rpb1, domain 5 C3B54_RS01505 PF04997 RNA polymerase Rpb1, domain 1 C3B54_RS01505 PF05000 RNA polymerase Rpb1, domain 4 C3B54_RS01505 PF04983 RNA polymerase Rpb1, domain 3 C3B54_RS01505 PF00623 RNA polymerase Rpb1, domain 2 C3B54_RS01515 PF00164 Ribosomal protein S12/S23 C3B54_RS01520 PF00177 Ribosomal protein S7p/S5e C3B54_RS01525 PF00009 Elongation factor Tu GTP binding domain C3B54_RS01525 PF14492 Elongation Factor G, domain II C3B54_RS01525 PF00679 Elongation factor G C-terminus C3B54_RS01525 PF03764 Elongation factor G, domain IV C3B54_RS01525 PF03144 Elongation factor Tu domain 2 C3B54_RS01530 PF03144 Elongation factor Tu domain 2 C3B54_RS01530 PF00009 Elongation factor Tu GTP binding domain C3B54_RS01530 PF03143 Elongation factor Tu C-terminal domain C3B54_RS01535 PF01381 Helix-turn-helix C3B54_RS01555 PF00338 Ribosomal protein S10p/S20e C3B54_RS01560 PF00297 Ribosomal protein L3 C3B54_RS01565 PF00573 Ribosomal protein L4/L1 family C3B54_RS01570 PF00276 Ribosomal protein L23 C3B54_RS01575 PF03947 Ribosomal Proteins L2, C-terminal domain C3B54_RS01575 PF00181 Ribosomal Proteins L2, RNA binding domain C3B54_RS01580 PF00203 Ribosomal protein S19 C3B54_RS01585 PF00237 Ribosomal protein L22p/L17e C3B54_RS01590 PF00189 Ribosomal protein S3, C-terminal domain C3B54_RS01590 PF07650 KH domain C3B54_RS01595 PF00252 Ribosomal protein L16p/L10e C3B54_RS01600 PF00831 Ribosomal L29 protein C3B54_RS01605 PF00366 Ribosomal protein S17 C3B54_RS01610 PF00238 Ribosomal protein L14p/L23e C3B54_RS01615 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C3B54_RS01620 PF00281 Ribosomal protein L5 C3B54_RS01620 PF00673 ribosomal L5P family C-terminus C3B54_RS01625 PF00410 Ribosomal protein S8 C3B54_RS01630 PF00347 Ribosomal protein L6 C3B54_RS01635 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C3B54_RS01640 PF00333 Ribosomal protein S5, N-terminal domain C3B54_RS01640 PF03719 Ribosomal protein S5, C-terminal domain C3B54_RS01645 PF00327 Ribosomal protein L30p/L7e C3B54_RS01650 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C3B54_RS01655 PF00344 SecY translocase C3B54_RS01665 PF01176 Translation initiation factor 1A / IF-1 C3B54_RS01670 PF00444 Ribosomal protein L36 C3B54_RS01675 PF00416 Ribosomal protein S13/S18 C3B54_RS01680 PF00411 Ribosomal protein S11 C3B54_RS01685 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C3B54_RS01685 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C3B54_RS01685 PF01000 RNA polymerase Rpb3/RpoA insert domain C3B54_RS01690 PF01196 Ribosomal protein L17 C3B54_RS01695 PF01416 tRNA pseudouridine synthase C3B54_RS01700 PF00572 Ribosomal protein L13 C3B54_RS01705 PF00380 Ribosomal protein S9/S16 C3B54_RS01710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3B54_RS01710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3B54_RS01710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3B54_RS01710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3B54_RS01715 PF00485 Phosphoribulokinase / Uridine kinase family C3B54_RS01720 PF01380 SIS domain C3B54_RS01725 PF01648 4'-phosphopantetheinyl transferase superfamily C3B54_RS01730 PF00842 Alanine racemase, C-terminal domain C3B54_RS01730 PF01168 Alanine racemase, N-terminal domain C3B54_RS01735 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C3B54_RS01740 PF00814 Glycoprotease family C3B54_RS01745 PF00583 Acetyltransferase (GNAT) family C3B54_RS01750 PF00814 Glycoprotease family C3B54_RS01760 PF00166 Chaperonin 10 Kd subunit C3B54_RS01765 PF00892 EamA-like transporter family C3B54_RS01775 PF00005 ABC transporter C3B54_RS01780 PF00005 ABC transporter C3B54_RS01780 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3B54_RS01785 PF11862 Domain of unknown function (DUF3382) C3B54_RS01785 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS01790 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS01795 PF00571 CBS domain C3B54_RS01795 PF00478 IMP dehydrogenase / GMP reductase domain C3B54_RS01800 PF00478 IMP dehydrogenase / GMP reductase domain C3B54_RS01815 PF00958 GMP synthase C terminal domain C3B54_RS01815 PF02540 NAD synthase C3B54_RS01815 PF00117 Glutamine amidotransferase class-I C3B54_RS01830 PF00580 UvrD/REP helicase N-terminal domain C3B54_RS01830 PF13361 UvrD-like helicase C-terminal domain C3B54_RS01835 PF00549 CoA-ligase C3B54_RS01835 PF08442 ATP-grasp domain C3B54_RS01840 PF02629 CoA binding domain C3B54_RS01840 PF00549 CoA-ligase C3B54_RS01850 PF00551 Formyl transferase C3B54_RS01855 PF01808 AICARFT/IMPCHase bienzyme C3B54_RS01855 PF02142 MGS-like domain C3B54_RS01865 PF00180 Isocitrate/isopropylmalate dehydrogenase C3B54_RS01890 PF00551 Formyl transferase C3B54_RS01895 PF07690 Major Facilitator Superfamily C3B54_RS01900 PF00464 Serine hydroxymethyltransferase C3B54_RS01905 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C3B54_RS01905 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C3B54_RS01910 PF00265 Thymidine kinase C3B54_RS01920 PF00149 Calcineurin-like phosphoesterase C3B54_RS01925 PF00905 Penicillin binding protein transpeptidase domain C3B54_RS01925 PF00912 Transglycosylase C3B54_RS01935 PF16177 Acetyl-coenzyme A synthetase N-terminus C3B54_RS01935 PF13193 AMP-binding enzyme C-terminal domain C3B54_RS01935 PF00501 AMP-binding enzyme C3B54_RS01940 PF00437 Type II/IV secretion system protein C3B54_RS01965 PF01131 DNA topoisomerase C3B54_RS01965 PF01751 Toprim domain C3B54_RS01965 PF13368 Topoisomerase C-terminal repeat C3B54_RS01970 PF02223 Thymidylate kinase C3B54_RS01975 PF12169 DNA polymerase III subunits gamma and tau domain III C3B54_RS01990 PF03786 D-mannonate dehydratase (UxuA) C3B54_RS02020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3B54_RS02020 PF13244 Domain of unknown function (DUF4040) C3B54_RS02020 PF00361 Proton-conducting membrane transporter C3B54_RS02020 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C3B54_RS02025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3B54_RS02030 PF00361 Proton-conducting membrane transporter C3B54_RS02045 PF03334 Na+/H+ antiporter subunit C3B54_RS02070 PF01641 SelR domain C3B54_RS02105 PF00118 TCP-1/cpn60 chaperonin family C3B54_RS02110 PF00672 HAMP domain C3B54_RS02110 PF00512 His Kinase A (phospho-acceptor) domain C3B54_RS02110 PF16527 Two-component sensor protein CpxA, periplasmic domain C3B54_RS02110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS02115 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS02115 PF00072 Response regulator receiver domain C3B54_RS02140 PF02424 ApbE family C3B54_RS02145 PF00970 Oxidoreductase FAD-binding domain C3B54_RS02145 PF00111 2Fe-2S iron-sulfur cluster binding domain C3B54_RS02155 PF00512 His Kinase A (phospho-acceptor) domain C3B54_RS02155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS02155 PF00672 HAMP domain C3B54_RS02160 PF00072 Response regulator receiver domain C3B54_RS02160 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS02180 PF00313 'Cold-shock' DNA-binding domain C3B54_RS02185 PF11228 Protein of unknown function (DUF3027) C3B54_RS02190 PF00266 Aminotransferase class-V C3B54_RS02195 PF18357 Diphteria toxin repressor SH3 domain C3B54_RS02195 PF02742 Iron dependent repressor, metal binding and dimerisation domain C3B54_RS02195 PF01325 Iron dependent repressor, N-terminal DNA binding domain C3B54_RS02205 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase C3B54_RS02205 PF03033 Glycosyltransferase family 28 N-terminal domain C3B54_RS02230 PF00483 Nucleotidyl transferase C3B54_RS02245 PF02797 Chalcone and stilbene synthases, C-terminal domain C3B54_RS02245 PF00195 Chalcone and stilbene synthases, N-terminal domain C3B54_RS02250 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family C3B54_RS02255 PF01494 FAD binding domain C3B54_RS02270 PF01145 SPFH domain / Band 7 family C3B54_RS02285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C3B54_RS02285 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C3B54_RS02295 PF00665 Integrase core domain C3B54_RS02300 PF00106 short chain dehydrogenase C3B54_RS02305 PF01022 Bacterial regulatory protein, arsR family C3B54_RS02335 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase C3B54_RS02340 PF07702 UTRA domain C3B54_RS02340 PF00392 Bacterial regulatory proteins, gntR family C3B54_RS02350 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS02355 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS02360 PF13580 SIS domain C3B54_RS02365 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3B54_RS02365 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3B54_RS02375 PF01979 Amidohydrolase family C3B54_RS02390 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB C3B54_RS02395 PF01381 Helix-turn-helix C3B54_RS02400 PF02469 Fasciclin domain C3B54_RS02410 PF05656 Protein of unknown function (DUF805) C3B54_RS02415 PF02469 Fasciclin domain C3B54_RS02425 PF00561 alpha/beta hydrolase fold C3B54_RS02440 PF03477 ATP cone domain C3B54_RS02440 PF02867 Ribonucleotide reductase, barrel domain C3B54_RS02440 PF00317 Ribonucleotide reductase, all-alpha domain C3B54_RS02450 PF00268 Ribonucleotide reductase, small chain C3B54_RS02455 PF00248 Aldo/keto reductase family C3B54_RS02465 PF03190 Protein of unknown function, DUF255 C3B54_RS02470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3B54_RS02475 PF08264 Anticodon-binding domain of tRNA C3B54_RS02475 PF09334 tRNA synthetases class I (M) C3B54_RS02480 PF01026 TatD related DNase C3B54_RS02485 PF00398 Ribosomal RNA adenine dimethylase C3B54_RS02495 PF00288 GHMP kinases N terminal domain C3B54_RS02495 PF08544 GHMP kinases C terminal C3B54_RS02500 PF01252 Signal peptidase (SPase) II C3B54_RS02505 PF00005 ABC transporter C3B54_RS02505 PF16326 ABC transporter C-terminal domain C3B54_RS02505 PF12848 ABC transporter C3B54_RS02510 PF01047 MarR family C3B54_RS02520 PF12804 MobA-like NTP transferase domain C3B54_RS02520 PF00132 Bacterial transferase hexapeptide (six repeats) C3B54_RS02525 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C3B54_RS02525 PF14572 Phosphoribosyl synthetase-associated domain C3B54_RS02535 PF13520 Amino acid permease C3B54_RS02540 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain C3B54_RS02540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3B54_RS02545 PF14693 Ribosomal protein TL5, C-terminal domain C3B54_RS02545 PF01386 Ribosomal L25p family C3B54_RS02550 PF01195 Peptidyl-tRNA hydrolase C3B54_RS02555 PF02559 CarD-like/TRCF domain C3B54_RS02555 PF00270 DEAD/DEAH box helicase C3B54_RS02555 PF17757 UvrB interaction domain C3B54_RS02555 PF03461 TRCF domain C3B54_RS02555 PF00271 Helicase conserved C-terminal domain C3B54_RS02560 PF03819 MazG nucleotide pyrophosphohydrolase domain C3B54_RS02565 PF13393 Histidyl-tRNA synthetase C3B54_RS02570 PF00113 Enolase, C-terminal TIM barrel domain C3B54_RS02570 PF03952 Enolase, N-terminal domain C3B54_RS02585 PF00082 Subtilase family C3B54_RS02600 PF04011 LemA family C3B54_RS02605 PF01435 Peptidase family M48 C3B54_RS02610 PF01594 AI-2E family transporter C3B54_RS02615 PF00291 Pyridoxal-phosphate dependent enzyme C3B54_RS02615 PF13291 ACT domain C3B54_RS02620 PF03449 Transcription elongation factor, N-terminal C3B54_RS02620 PF01272 Transcription elongation factor, GreA/GreB, C-term C3B54_RS02635 PF03006 Haemolysin-III related C3B54_RS02640 PF01255 Putative undecaprenyl diphosphate synthase C3B54_RS02645 PF02562 PhoH-like protein C3B54_RS02645 PF13638 PIN domain C3B54_RS02650 PF10415 Fumarase C C-terminus C3B54_RS02650 PF00206 Lyase C3B54_RS02660 PF02609 Exonuclease VII small subunit C3B54_RS02665 PF13742 OB-fold nucleic acid binding domain C3B54_RS02665 PF02601 Exonuclease VII, large subunit C3B54_RS02670 PF02401 LytB protein C3B54_RS02675 PF01116 Fructose-bisphosphate aldolase class-II C3B54_RS02680 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded C3B54_RS02685 PF02646 RmuC family C3B54_RS02690 PF06071 Protein of unknown function (DUF933) C3B54_RS02690 PF01926 50S ribosome-binding GTPase C3B54_RS02700 PF01381 Helix-turn-helix C3B54_RS02705 PF02661 Fic/DOC family C3B54_RS02705 PF13784 Fic/DOC family N-terminal C3B54_RS02725 PF00232 Glycosyl hydrolase family 1 C3B54_RS02730 PF08669 Glycine cleavage T-protein C-terminal barrel domain C3B54_RS02730 PF01571 Aminomethyltransferase folate-binding domain C3B54_RS02735 PF01597 Glycine cleavage H-protein C3B54_RS02740 PF02347 Glycine cleavage system P-protein C3B54_RS02745 PF17874 MalT-like TPR region C3B54_RS02745 PF00196 Bacterial regulatory proteins, luxR family C3B54_RS02765 PF00171 Aldehyde dehydrogenase family C3B54_RS02775 PF00578 AhpC/TSA family C3B54_RS02790 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3B54_RS02795 PF07690 Major Facilitator Superfamily C3B54_RS02800 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3B54_RS02810 PF02595 Glycerate kinase family C3B54_RS02820 PF03741 Integral membrane protein TerC family C3B54_RS02825 PF00330 Aconitase family (aconitate hydratase) C3B54_RS02830 PF00694 Aconitase C-terminal domain C3B54_RS02835 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3B54_RS02845 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C3B54_RS02845 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C3B54_RS02850 PF12697 Alpha/beta hydrolase family C3B54_RS02855 PF02875 Mur ligase family, glutamate ligase domain C3B54_RS02855 PF08245 Mur ligase middle domain C3B54_RS02860 PF07478 D-ala D-ala ligase C-terminus C3B54_RS02860 PF01820 D-ala D-ala ligase N-terminus C3B54_RS02880 PF17191 RecG wedge domain C3B54_RS02880 PF00270 DEAD/DEAH box helicase C3B54_RS02880 PF00271 Helicase conserved C-terminal domain C3B54_RS02885 PF01467 Cytidylyltransferase-like C3B54_RS02890 PF02620 Large ribosomal RNA subunit accumulation protein YceD C3B54_RS02895 PF01783 Ribosomal L32p protein family C3B54_RS02900 PF14622 Ribonuclease-III-like C3B54_RS02900 PF00035 Double-stranded RNA binding motif C3B54_RS02905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C3B54_RS02905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C3B54_RS02905 PF06827 Zinc finger found in FPG and IleRS C3B54_RS02910 PF06470 SMC proteins Flexible Hinge Domain C3B54_RS02910 PF02463 RecF/RecN/SMC N terminal domain C3B54_RS02915 PF02881 SRP54-type protein, helical bundle domain C3B54_RS02915 PF00448 SRP54-type protein, GTPase domain C3B54_RS02920 PF00132 Bacterial transferase hexapeptide (six repeats) C3B54_RS02925 PF02978 Signal peptide binding domain C3B54_RS02925 PF02881 SRP54-type protein, helical bundle domain C3B54_RS02925 PF00448 SRP54-type protein, GTPase domain C3B54_RS02930 PF00886 Ribosomal protein S16 C3B54_RS02940 PF01782 RimM N-terminal domain C3B54_RS02945 PF01746 tRNA (Guanine-1)-methyltransferase C3B54_RS02950 PF00557 Metallopeptidase family M24 C3B54_RS02955 PF02909 Tetracyclin repressor-like, C-terminal domain C3B54_RS02955 PF00440 Bacterial regulatory proteins, tetR family C3B54_RS02960 PF01245 Ribosomal protein L19 C3B54_RS02965 PF10502 Signal peptidase, peptidase S26 C3B54_RS02970 PF01351 Ribonuclease HII C3B54_RS02975 PF10611 Protein of unknown function (DUF2469) C3B54_RS02985 PF00149 Calcineurin-like phosphoesterase C3B54_RS02990 PF02899 Phage integrase, N-terminal SAM-like domain C3B54_RS02990 PF00589 Phage integrase family C3B54_RS03000 PF00318 Ribosomal protein S2 C3B54_RS03005 PF00889 Elongation factor TS C3B54_RS03010 PF00696 Amino acid kinase family C3B54_RS03015 PF01765 Ribosome recycling factor C3B54_RS03060 PF00266 Aminotransferase class-V C3B54_RS03070 PF13288 DXP reductoisomerase C-terminal domain C3B54_RS03070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C3B54_RS03070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C3B54_RS03075 PF17820 PDZ domain C3B54_RS03075 PF02163 Peptidase family M50 C3B54_RS03080 PF04551 GcpE protein C3B54_RS03085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3B54_RS03085 PF03129 Anticodon binding domain C3B54_RS03085 PF04073 Aminoacyl-tRNA editing domain C3B54_RS03090 PF13184 NusA-like KH domain C3B54_RS03090 PF08529 NusA N-terminal domain C3B54_RS03100 PF04760 Translation initiation factor IF-2, N-terminal region C3B54_RS03100 PF11987 Translation-initiation factor 2 C3B54_RS03100 PF00009 Elongation factor Tu GTP binding domain C3B54_RS03105 PF02033 Ribosome-binding factor A C3B54_RS03110 PF01048 Phosphorylase superfamily C3B54_RS03115 PF10576 Iron-sulfur binding domain of endonuclease III C3B54_RS03115 PF00633 Helix-hairpin-helix motif C3B54_RS03115 PF00730 HhH-GPD superfamily base excision DNA repair protein C3B54_RS03120 PF13460 NAD(P)H-binding C3B54_RS03120 PF11066 Protein of unknown function (DUF2867) C3B54_RS03125 PF04434 SWIM zinc finger C3B54_RS03125 PF00271 Helicase conserved C-terminal domain C3B54_RS03125 PF00176 SNF2 family N-terminal domain C3B54_RS03135 PF00293 NUDIX domain C3B54_RS03160 PF00206 Lyase C3B54_RS03160 PF10415 Fumarase C C-terminus C3B54_RS03175 PF00312 Ribosomal protein S15 C3B54_RS03180 PF00575 S1 RNA binding domain C3B54_RS03180 PF00013 KH domain C3B54_RS03180 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C3B54_RS03180 PF01138 3' exoribonuclease family, domain 1 C3B54_RS03185 PF01036 Bacteriorhodopsin-like protein C3B54_RS03190 PF00675 Insulinase (Peptidase family M16) C3B54_RS03190 PF05193 Peptidase M16 inactive domain C3B54_RS03200 PF12826 Helix-hairpin-helix motif C3B54_RS03200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C3B54_RS03200 PF03120 NAD-dependent DNA ligase OB-fold domain C3B54_RS03200 PF01653 NAD-dependent DNA ligase adenylation domain C3B54_RS03200 PF00533 BRCA1 C Terminus (BRCT) domain C3B54_RS03205 PF02686 Glu-tRNAGln amidotransferase C subunit C3B54_RS03210 PF01425 Amidase C3B54_RS03215 PF02637 GatB domain C3B54_RS03215 PF02934 GatB/GatE catalytic domain C3B54_RS03230 PF00313 'Cold-shock' DNA-binding domain C3B54_RS03245 PF00535 Glycosyl transferase family 2 C3B54_RS03275 PF00929 Exonuclease C3B54_RS03285 PF13533 Biotin-lipoyl like C3B54_RS03290 PF00005 ABC transporter C3B54_RS03290 PF02687 FtsX-like permease family C3B54_RS03290 PF12704 MacB-like periplasmic core domain C3B54_RS03295 PF12704 MacB-like periplasmic core domain C3B54_RS03295 PF02687 FtsX-like permease family C3B54_RS03300 PF02661 Fic/DOC family C3B54_RS03315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3B54_RS03315 PF13378 Enolase C-terminal domain-like C3B54_RS03320 PF00571 CBS domain C3B54_RS03320 PF00291 Pyridoxal-phosphate dependent enzyme C3B54_RS03325 PF01053 Cys/Met metabolism PLP-dependent enzyme C3B54_RS03330 PF00300 Histidine phosphatase superfamily (branch 1) C3B54_RS03335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3B54_RS03335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3B54_RS03340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3B54_RS03340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3B54_RS03345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3B54_RS03345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3B54_RS03345 PF01842 ACT domain C3B54_RS03350 PF00455 DeoR C terminal sensor domain C3B54_RS03350 PF08220 DeoR-like helix-turn-helix domain C3B54_RS03355 PF13407 Periplasmic binding protein domain C3B54_RS03360 PF00005 ABC transporter C3B54_RS03365 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS03370 PF03471 Transporter associated domain C3B54_RS03370 PF01595 Cyclin M transmembrane N-terminal domain C3B54_RS03370 PF00571 CBS domain C3B54_RS03385 PF01758 Sodium Bile acid symporter family C3B54_RS03390 PF13193 AMP-binding enzyme C-terminal domain C3B54_RS03390 PF00501 AMP-binding enzyme C3B54_RS03400 PF00892 EamA-like transporter family C3B54_RS03415 PF01740 STAS domain C3B54_RS03415 PF00916 Sulfate permease family C3B54_RS03425 PF12833 Helix-turn-helix domain C3B54_RS03425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3B54_RS03425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3B54_RS03425 PF02805 Metal binding domain of Ada C3B54_RS03450 PF00398 Ribosomal RNA adenine dimethylase C3B54_RS03455 PF00459 Inositol monophosphatase family C3B54_RS03460 PF00534 Glycosyl transferases group 1 C3B54_RS03460 PF13439 Glycosyltransferase Family 4 C3B54_RS03510 PF01638 HxlR-like helix-turn-helix C3B54_RS03560 PF00690 Cation transporter/ATPase, N-terminus C3B54_RS03560 PF00689 Cation transporting ATPase, C-terminus C3B54_RS03575 PF04261 Dyp-type peroxidase family C3B54_RS03580 PF00248 Aldo/keto reductase family C3B54_RS03595 PF01625 Peptide methionine sulfoxide reductase C3B54_RS03600 PF00436 Single-strand binding protein family C3B54_RS03610 PF00005 ABC transporter C3B54_RS03610 PF12848 ABC transporter C3B54_RS03620 PF01152 Bacterial-like globin C3B54_RS03625 PF00924 Mechanosensitive ion channel C3B54_RS03630 PF11838 ERAP1-like C-terminal domain C3B54_RS03630 PF01433 Peptidase family M1 domain C3B54_RS03640 PF02502 Ribose/Galactose Isomerase C3B54_RS03645 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C3B54_RS03645 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C3B54_RS03645 PF06827 Zinc finger found in FPG and IleRS C3B54_RS03675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3B54_RS03675 PF05697 Bacterial trigger factor protein (TF) C3B54_RS03675 PF05698 Bacterial trigger factor protein (TF) C-terminus C3B54_RS03680 PF00574 Clp protease C3B54_RS03685 PF00574 Clp protease C3B54_RS03695 PF06689 ClpX C4-type zinc finger C3B54_RS03695 PF07724 AAA domain (Cdc48 subfamily) C3B54_RS03695 PF10431 C-terminal, D2-small domain, of ClpB protein C3B54_RS03705 PF00583 Acetyltransferase (GNAT) family C3B54_RS03710 PF08264 Anticodon-binding domain of tRNA C3B54_RS03710 PF00133 tRNA synthetases class I (I, L, M and V) C3B54_RS03720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3B54_RS03725 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS03730 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS03730 PF12911 N-terminal TM domain of oligopeptide transport permease C C3B54_RS03735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3B54_RS03735 PF00005 ABC transporter C3B54_RS03740 PF00133 tRNA synthetases class I (I, L, M and V) C3B54_RS03740 PF08264 Anticodon-binding domain of tRNA C3B54_RS03745 PF02875 Mur ligase family, glutamate ligase domain C3B54_RS03745 PF08245 Mur ligase middle domain C3B54_RS03755 PF00334 Nucleoside diphosphate kinase C3B54_RS03765 PF10150 Ribonuclease E/G family C3B54_RS03770 PF03773 Predicted permease C3B54_RS03785 PF00829 Ribosomal prokaryotic L21 protein C3B54_RS03790 PF01016 Ribosomal L27 protein C3B54_RS03795 PF01926 50S ribosome-binding GTPase C3B54_RS03795 PF09269 Domain of unknown function (DUF1967) C3B54_RS03795 PF01018 GTP1/OBG C3B54_RS03800 PF00696 Amino acid kinase family C3B54_RS03805 PF00171 Aldehyde dehydrogenase family C3B54_RS03815 PF01467 Cytidylyltransferase-like C3B54_RS03835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C3B54_RS03835 PF01243 Pyridoxamine 5'-phosphate oxidase C3B54_RS03840 PF00296 Luciferase-like monooxygenase C3B54_RS03850 PF00999 Sodium/hydrogen exchanger family C3B54_RS03850 PF02254 TrkA-N domain C3B54_RS03855 PF00933 Glycosyl hydrolase family 3 N terminal domain C3B54_RS03870 PF00005 ABC transporter C3B54_RS03870 PF00571 CBS domain C3B54_RS03875 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS03880 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS03885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C3B54_RS03890 PF09335 SNARE associated Golgi protein C3B54_RS03895 PF01654 Cytochrome bd terminal oxidase subunit I C3B54_RS03900 PF02322 Cytochrome bd terminal oxidase subunit II C3B54_RS03905 PF00005 ABC transporter C3B54_RS03905 PF00664 ABC transporter transmembrane region C3B54_RS03910 PF00664 ABC transporter transmembrane region C3B54_RS03910 PF00005 ABC transporter C3B54_RS03920 PF04715 Anthranilate synthase component I, N terminal region C3B54_RS03920 PF00117 Glutamine amidotransferase class-I C3B54_RS03920 PF00425 chorismate binding enzyme C3B54_RS03925 PF13603 Leucyl-tRNA synthetase, Domain 2 C3B54_RS03925 PF00133 tRNA synthetases class I (I, L, M and V) C3B54_RS03925 PF09334 tRNA synthetases class I (M) C3B54_RS03925 PF08264 Anticodon-binding domain of tRNA C3B54_RS03930 PF10531 SLBB domain C3B54_RS03945 PF01649 Ribosomal protein S20 C3B54_RS03950 PF00679 Elongation factor G C-terminus C3B54_RS03950 PF00009 Elongation factor Tu GTP binding domain C3B54_RS03950 PF06421 GTP-binding protein LepA C-terminus C3B54_RS03960 PF01687 Riboflavin kinase C3B54_RS03960 PF06574 FAD synthetase C3B54_RS03970 PF01791 DeoC/LacD family aldolase C3B54_RS03975 PF00171 Aldehyde dehydrogenase family C3B54_RS03980 PF00171 Aldehyde dehydrogenase family C3B54_RS03985 PF09142 tRNA Pseudouridine synthase II, C terminal C3B54_RS03985 PF16198 tRNA pseudouridylate synthase B C-terminal domain C3B54_RS03985 PF01509 TruB family pseudouridylate synthase (N terminal domain) C3B54_RS03995 PF04055 Radical SAM superfamily C3B54_RS04000 PF01628 HrcA protein C terminal domain C3B54_RS04005 PF00684 DnaJ central domain C3B54_RS04005 PF01556 DnaJ C terminal domain C3B54_RS04005 PF00226 DnaJ domain C3B54_RS04010 PF04452 RNA methyltransferase C3B54_RS04015 PF01230 HIT domain C3B54_RS04020 PF02562 PhoH-like protein C3B54_RS04025 PF02130 Uncharacterized protein family UPF0054 C3B54_RS04030 PF01595 Cyclin M transmembrane N-terminal domain C3B54_RS04030 PF03471 Transporter associated domain C3B54_RS04030 PF00571 CBS domain C3B54_RS04035 PF07650 KH domain C3B54_RS04035 PF01926 50S ribosome-binding GTPase C3B54_RS04040 PF08502 LeuA allosteric (dimerisation) domain C3B54_RS04040 PF00682 HMGL-like C3B54_RS04045 PF11967 Recombination protein O N terminal C3B54_RS04045 PF02565 Recombination protein O C terminal C3B54_RS04050 PF01255 Putative undecaprenyl diphosphate synthase C3B54_RS04055 PF03129 Anticodon binding domain C3B54_RS04055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3B54_RS04060 PF01207 Dihydrouridine synthase (Dus) C3B54_RS04065 PF13286 Phosphohydrolase-associated domain C3B54_RS04065 PF01966 HD domain C3B54_RS04070 PF13662 Toprim domain C3B54_RS04070 PF08278 DNA primase DnaG DnaB-binding C3B54_RS04070 PF08275 DNA primase catalytic core, N-terminal domain C3B54_RS04070 PF01807 CHC2 zinc finger C3B54_RS04070 PF10410 DnaB-helicase binding domain of primase C3B54_RS04075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3B54_RS04085 PF05384 Sensor protein DegS C3B54_RS04085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS04085 PF07730 Histidine kinase C3B54_RS04105 PF00107 Zinc-binding dehydrogenase C3B54_RS04105 PF08240 Alcohol dehydrogenase GroES-like domain C3B54_RS04120 PF01593 Flavin containing amine oxidoreductase C3B54_RS04130 PF00356 Bacterial regulatory proteins, lacI family C3B54_RS04135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3B54_RS04135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3B54_RS04145 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS04150 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS04150 PF12911 N-terminal TM domain of oligopeptide transport permease C C3B54_RS04155 PF00005 ABC transporter C3B54_RS04155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3B54_RS04160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3B54_RS04160 PF00005 ABC transporter C3B54_RS04165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3B54_RS04170 PF00679 Elongation factor G C-terminus C3B54_RS04170 PF14492 Elongation Factor G, domain II C3B54_RS04170 PF00009 Elongation factor Tu GTP binding domain C3B54_RS04170 PF03144 Elongation factor Tu domain 2 C3B54_RS04180 PF00005 ABC transporter C3B54_RS04185 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS04190 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS04195 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3B54_RS04220 PF00196 Bacterial regulatory proteins, luxR family C3B54_RS04220 PF00072 Response regulator receiver domain C3B54_RS04260 PF03033 Glycosyltransferase family 28 N-terminal domain C3B54_RS04265 PF00440 Bacterial regulatory proteins, tetR family C3B54_RS04270 PF01699 Sodium/calcium exchanger protein C3B54_RS04285 PF07690 Major Facilitator Superfamily C3B54_RS04290 PF00005 ABC transporter C3B54_RS04290 PF00664 ABC transporter transmembrane region C3B54_RS04295 PF00664 ABC transporter transmembrane region C3B54_RS04295 PF00005 ABC transporter C3B54_RS04300 PF00271 Helicase conserved C-terminal domain C3B54_RS04300 PF00270 DEAD/DEAH box helicase C3B54_RS04315 PF13977 BetI-type transcriptional repressor, C-terminal C3B54_RS04315 PF00440 Bacterial regulatory proteins, tetR family C3B54_RS04330 PF00202 Aminotransferase class-III C3B54_RS04335 PF00490 Delta-aminolevulinic acid dehydratase C3B54_RS04345 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C3B54_RS04345 PF03900 Porphobilinogen deaminase, C-terminal domain C3B54_RS04350 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C3B54_RS04350 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C3B54_RS04350 PF01488 Shikimate / quinate 5-dehydrogenase C3B54_RS04355 PF01208 Uroporphyrinogen decarboxylase (URO-D) C3B54_RS04360 PF01593 Flavin containing amine oxidoreductase C3B54_RS04365 PF06778 Chlorite dismutase C3B54_RS04370 PF00762 Ferrochelatase C3B54_RS04425 PF03176 MMPL family C3B54_RS04435 PF00109 Beta-ketoacyl synthase, N-terminal domain C3B54_RS04435 PF02801 Beta-ketoacyl synthase, C-terminal domain C3B54_RS04440 PF00550 Phosphopantetheine attachment site C3B54_RS04445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C3B54_RS04445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C3B54_RS04450 PF00698 Acyl transferase domain C3B54_RS04450 PF00550 Phosphopantetheine attachment site C3B54_RS04450 PF08659 KR domain C3B54_RS04450 PF02801 Beta-ketoacyl synthase, C-terminal domain C3B54_RS04450 PF00109 Beta-ketoacyl synthase, N-terminal domain C3B54_RS04450 PF14765 Polyketide synthase dehydratase C3B54_RS04450 PF08240 Alcohol dehydrogenase GroES-like domain C3B54_RS04450 PF16197 Ketoacyl-synthetase C-terminal extension C3B54_RS04455 PF13556 PucR C-terminal helix-turn-helix domain C3B54_RS04455 PF17853 GGDEF-like domain C3B54_RS04460 PF17831 Pyruvate dehydrogenase E1 component middle domain C3B54_RS04460 PF00456 Transketolase, thiamine diphosphate binding domain C3B54_RS04490 PF01784 NIF3 (NGG1p interacting factor 3) C3B54_RS04500 PF00300 Histidine phosphatase superfamily (branch 1) C3B54_RS04500 PF13456 Reverse transcriptase-like C3B54_RS04510 PF00480 ROK family C3B54_RS04515 PF00557 Metallopeptidase family M24 C3B54_RS04525 PF02548 Ketopantoate hydroxymethyltransferase C3B54_RS04530 PF02540 NAD synthase C3B54_RS04530 PF00795 Carbon-nitrogen hydrolase C3B54_RS04535 PF00120 Glutamine synthetase, catalytic domain C3B54_RS04535 PF03951 Glutamine synthetase, beta-Grasp domain C3B54_RS04540 PF08335 GlnD PII-uridylyltransferase C3B54_RS04540 PF03710 Glutamate-ammonia ligase adenylyltransferase C3B54_RS04545 PF03951 Glutamine synthetase, beta-Grasp domain C3B54_RS04545 PF00120 Glutamine synthetase, catalytic domain C3B54_RS04560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3B54_RS04560 PF00364 Biotin-requiring enzyme C3B54_RS04560 PF02817 e3 binding domain C3B54_RS04565 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3B54_RS04565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3B54_RS04570 PF02789 Cytosol aminopeptidase family, N-terminal domain C3B54_RS04570 PF00883 Cytosol aminopeptidase family, catalytic domain C3B54_RS04580 PF04545 Sigma-70, region 4 C3B54_RS04580 PF04539 Sigma-70 region 3 C3B54_RS04580 PF04542 Sigma-70 region 2 C3B54_RS04580 PF00140 Sigma-70 factor, region 1.2 C3B54_RS04585 PF08245 Mur ligase middle domain C3B54_RS04585 PF08353 Domain of unknown function (DUF1727) C3B54_RS04595 PF01168 Alanine racemase, N-terminal domain C3B54_RS04595 PF00842 Alanine racemase, C-terminal domain C3B54_RS04600 PF00842 Alanine racemase, C-terminal domain C3B54_RS04600 PF01168 Alanine racemase, N-terminal domain C3B54_RS04610 PF00204 DNA gyrase B C3B54_RS04610 PF00986 DNA gyrase B subunit, carboxyl terminus C3B54_RS04610 PF01751 Toprim domain C3B54_RS04610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS04615 PF00521 DNA gyrase/topoisomerase IV, subunit A C3B54_RS04615 PF03989 DNA gyrase C-terminal domain, beta-propeller C3B54_RS04640 PF00692 dUTPase C3B54_RS04655 PF00694 Aconitase C-terminal domain C3B54_RS04655 PF00330 Aconitase family (aconitate hydratase) C3B54_RS04660 PF02780 Transketolase, C-terminal domain C3B54_RS04660 PF02779 Transketolase, pyrimidine binding domain C3B54_RS04660 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C3B54_RS04680 PF02657 Fe-S metabolism associated domain C3B54_RS04685 PF00581 Rhodanese-like domain C3B54_RS04690 PF08299 Bacterial dnaA protein helix-turn-helix C3B54_RS04690 PF11638 DnaA N-terminal domain C3B54_RS04690 PF00308 Bacterial dnaA protein C3B54_RS04695 PF00909 Ammonium Transporter Family C3B54_RS04715 PF01066 CDP-alcohol phosphatidyltransferase C3B54_RS04720 PF00498 FHA domain C3B54_RS04725 PF00376 MerR family regulatory protein C3B54_RS04730 PF13411 MerR HTH family regulatory protein C3B54_RS04735 PF13614 AAA domain C3B54_RS04740 PF00682 HMGL-like C3B54_RS04740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3B54_RS04740 PF02436 Conserved carboxylase domain C3B54_RS04740 PF00364 Biotin-requiring enzyme C3B54_RS04740 PF00289 Biotin carboxylase, N-terminal domain C3B54_RS04740 PF02785 Biotin carboxylase C-terminal domain C3B54_RS04745 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C3B54_RS04750 PF01327 Polypeptide deformylase C3B54_RS04755 PF00480 ROK family C3B54_RS04765 PF01474 Class-II DAHP synthetase family C3B54_RS04770 PF03793 PASTA domain C3B54_RS04770 PF00069 Protein kinase domain C3B54_RS04775 PF05257 CHAP domain C3B54_RS04775 PF01476 LysM domain C3B54_RS04785 PF00348 Polyprenyl synthetase C3B54_RS04795 PF02381 MraZ protein, putative antitoxin-like C3B54_RS04800 PF01795 MraW methylase family C3B54_RS04810 PF03717 Penicillin-binding Protein dimerisation domain C3B54_RS04810 PF00905 Penicillin binding protein transpeptidase domain C3B54_RS04815 PF08245 Mur ligase middle domain C3B54_RS04815 PF02875 Mur ligase family, glutamate ligase domain C3B54_RS04815 PF01225 Mur ligase family, catalytic domain C3B54_RS04825 PF00953 Glycosyl transferase family 4 C3B54_RS04830 PF02875 Mur ligase family, glutamate ligase domain C3B54_RS04830 PF08245 Mur ligase middle domain C3B54_RS04835 PF01098 Cell cycle protein C3B54_RS04840 PF04101 Glycosyltransferase family 28 C-terminal domain C3B54_RS04840 PF03033 Glycosyltransferase family 28 N-terminal domain C3B54_RS04845 PF08245 Mur ligase middle domain C3B54_RS04845 PF02875 Mur ligase family, glutamate ligase domain C3B54_RS04845 PF01225 Mur ligase family, catalytic domain C3B54_RS04855 PF00091 Tubulin/FtsZ family, GTPase domain C3B54_RS04855 PF12327 FtsZ family, C-terminal domain C3B54_RS04860 PF01168 Alanine racemase, N-terminal domain C3B54_RS04865 PF04472 Cell division protein SepF C3B54_RS04875 PF05103 DivIVA protein C3B54_RS04880 PF00849 RNA pseudouridylate synthase C3B54_RS04885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C3B54_RS04885 PF02811 PHP domain C3B54_RS04885 PF14579 Helix-hairpin-helix motif C3B54_RS04885 PF07733 Bacterial DNA polymerase III alpha NTPase domain C3B54_RS04895 PF00815 Histidinol dehydrogenase C3B54_RS04900 PF03477 ATP cone domain C3B54_RS04905 PF01180 Dihydroorotate dehydrogenase C3B54_RS04910 PF11241 Protein of unknown function (DUF3043) C3B54_RS04915 PF01546 Peptidase family M20/M25/M40 C3B54_RS04915 PF07687 Peptidase dimerisation domain C3B54_RS04920 PF01521 Iron-sulphur cluster biosynthesis C3B54_RS04925 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C3B54_RS04930 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3B54_RS04935 PF12270 Cytochrome c oxidase subunit IV C3B54_RS04945 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C3B54_RS04945 PF10996 Beta-Casp domain C3B54_RS04945 PF00753 Metallo-beta-lactamase superfamily C3B54_RS04950 PF13631 Cytochrome b(N-terminal)/b6/petB C3B54_RS04955 PF00355 Rieske [2Fe-2S] domain C3B54_RS04960 PF00034 Cytochrome c C3B54_RS04960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C3B54_RS04965 PF00510 Cytochrome c oxidase subunit III C3B54_RS04970 PF00591 Glycosyl transferase family, a/b domain C3B54_RS04970 PF02885 Glycosyl transferase family, helical bundle domain C3B54_RS04985 PF00294 pfkB family carbohydrate kinase C3B54_RS04990 PF00293 NUDIX domain C3B54_RS05005 PF00795 Carbon-nitrogen hydrolase C3B54_RS05005 PF00535 Glycosyl transferase family 2 C3B54_RS05010 PF00271 Helicase conserved C-terminal domain C3B54_RS05010 PF08148 DSHCT (NUC185) domain C3B54_RS05010 PF00270 DEAD/DEAH box helicase C3B54_RS05015 PF00902 Sec-independent protein translocase protein (TatC) C3B54_RS05020 PF02416 mttA/Hcf106 family C3B54_RS05030 PF13280 WYL domain C3B54_RS05040 PF08704 tRNA methyltransferase complex GCD14 subunit C3B54_RS05045 PF13419 Haloacid dehalogenase-like hydrolase C3B54_RS05055 PF02673 Bacitracin resistance protein BacA C3B54_RS05075 PF02811 PHP domain C3B54_RS05075 PF14579 Helix-hairpin-helix motif C3B54_RS05075 PF07733 Bacterial DNA polymerase III alpha NTPase domain C3B54_RS05075 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C3B54_RS05080 PF00588 SpoU rRNA Methylase family C3B54_RS05085 PF02146 Sir2 family C3B54_RS05090 PF00300 Histidine phosphatase superfamily (branch 1) C3B54_RS05095 PF04073 Aminoacyl-tRNA editing domain C3B54_RS05095 PF03129 Anticodon binding domain C3B54_RS05095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3B54_RS05100 PF00128 Alpha amylase, catalytic domain C3B54_RS05100 PF16657 Maltogenic Amylase, C-terminal domain C3B54_RS05105 PF11490 DNA polymerase III polC-type N-terminus II C3B54_RS05105 PF07733 Bacterial DNA polymerase III alpha NTPase domain C3B54_RS05105 PF14579 Helix-hairpin-helix motif C3B54_RS05105 PF00929 Exonuclease C3B54_RS05105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C3B54_RS05105 PF02811 PHP domain C3B54_RS05110 PF01197 Ribosomal protein L31 C3B54_RS05115 PF00005 ABC transporter C3B54_RS05120 PF00483 Nucleotidyl transferase C3B54_RS05145 PF02104 SURF1 family C3B54_RS05150 PF01883 Iron-sulfur cluster assembly protein C3B54_RS05155 PF00005 ABC transporter C3B54_RS05160 PF00355 Rieske [2Fe-2S] domain C3B54_RS05165 PF01458 Uncharacterized protein family (UPF0051) C3B54_RS05170 PF01458 Uncharacterized protein family (UPF0051) C3B54_RS05180 PF01040 UbiA prenyltransferase family C3B54_RS05185 PF00456 Transketolase, thiamine diphosphate binding domain C3B54_RS05185 PF02780 Transketolase, C-terminal domain C3B54_RS05185 PF02779 Transketolase, pyrimidine binding domain C3B54_RS05190 PF00923 Transaldolase/Fructose-6-phosphate aldolase C3B54_RS05195 PF00342 Phosphoglucose isomerase C3B54_RS05200 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain C3B54_RS05200 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain C3B54_RS05210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase C3B54_RS05220 PF03840 Preprotein translocase SecG subunit C3B54_RS05225 PF00121 Triosephosphate isomerase C3B54_RS05230 PF00162 Phosphoglycerate kinase C3B54_RS05235 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3B54_RS05235 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3B54_RS05240 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3B54_RS05240 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3B54_RS05245 PF10298 WhiA N-terminal LAGLIDADG-like domain C3B54_RS05245 PF14527 WhiA LAGLIDADG-like domain C3B54_RS05245 PF02650 WhiA C-terminal HTH domain C3B54_RS05250 PF03668 P-loop ATPase protein family C3B54_RS05255 PF01541 GIY-YIG catalytic domain C3B54_RS05255 PF02151 UvrB/uvrC motif C3B54_RS05255 PF08459 UvrC Helix-hairpin-helix N-terminal C3B54_RS05260 PF00005 ABC transporter C3B54_RS05260 PF17755 UvrA DNA-binding domain C3B54_RS05260 PF17760 UvrA interaction domain C3B54_RS05265 PF12344 Ultra-violet resistance protein B C3B54_RS05265 PF17757 UvrB interaction domain C3B54_RS05265 PF02151 UvrB/uvrC motif C3B54_RS05265 PF04851 Type III restriction enzyme, res subunit C3B54_RS05265 PF00271 Helicase conserved C-terminal domain C3B54_RS05270 PF01121 Dephospho-CoA kinase C3B54_RS05275 PF00575 S1 RNA binding domain C3B54_RS05280 PF01367 5'-3' exonuclease, C-terminal SAM fold C3B54_RS05280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C3B54_RS05280 PF00476 DNA polymerase family A C3B54_RS05285 PF03061 Thioesterase superfamily C3B54_RS05290 PF03861 ANTAR domain C3B54_RS05290 PF00072 Response regulator receiver domain C3B54_RS05305 PF00224 Pyruvate kinase, barrel domain C3B54_RS05305 PF02887 Pyruvate kinase, alpha/beta domain C3B54_RS05310 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3B54_RS05310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C3B54_RS05315 PF01493 GXGXG motif C3B54_RS05315 PF01645 Conserved region in glutamate synthase C3B54_RS05315 PF04898 Glutamate synthase central domain C3B54_RS05315 PF00310 Glutamine amidotransferases class-II C3B54_RS05320 PF01790 Prolipoprotein diacylglyceryl transferase C3B54_RS05325 PF00290 Tryptophan synthase alpha chain C3B54_RS05330 PF00291 Pyridoxal-phosphate dependent enzyme C3B54_RS05335 PF00218 Indole-3-glycerol phosphate synthase C3B54_RS05350 PF04715 Anthranilate synthase component I, N terminal region C3B54_RS05350 PF00425 chorismate binding enzyme C3B54_RS05355 PF01502 Phosphoribosyl-AMP cyclohydrolase C3B54_RS05360 PF00977 Histidine biosynthesis protein C3B54_RS05365 PF01634 ATP phosphoribosyltransferase C3B54_RS05365 PF08029 HisG, C-terminal domain C3B54_RS05370 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C3B54_RS05375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3B54_RS05380 PF00834 Ribulose-phosphate 3 epimerase family C3B54_RS05385 PF01189 16S rRNA methyltransferase RsmB/F C3B54_RS05385 PF01029 NusB family C3B54_RS05390 PF02911 Formyl transferase, C-terminal domain C3B54_RS05390 PF00551 Formyl transferase C3B54_RS05395 PF17764 3′ DNA-binding domain (3′BD) C3B54_RS05400 PF00438 S-adenosylmethionine synthetase, N-terminal domain C3B54_RS05400 PF02772 S-adenosylmethionine synthetase, central domain C3B54_RS05400 PF02773 S-adenosylmethionine synthetase, C-terminal domain C3B54_RS05405 PF02441 Flavoprotein C3B54_RS05405 PF04127 DNA / pantothenate metabolism flavoprotein C3B54_RS05410 PF01192 RNA polymerase Rpb6 C3B54_RS05415 PF00625 Guanylate kinase C3B54_RS05420 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C3B54_RS05425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3B54_RS05425 PF02142 MGS-like domain C3B54_RS05425 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C3B54_RS05430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C3B54_RS05430 PF00117 Glutamine amidotransferase class-I C3B54_RS05440 PF01979 Amidohydrolase family C3B54_RS05445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3B54_RS05445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3B54_RS05450 PF00156 Phosphoribosyl transferase domain C3B54_RS05455 PF01029 NusB family C3B54_RS05460 PF09285 Elongation factor P, C-terminal C3B54_RS05460 PF08207 Elongation factor P (EF-P) KOW-like domain C3B54_RS05460 PF01132 Elongation factor P (EF-P) OB domain C3B54_RS05465 PF01220 Dehydroquinase class II C3B54_RS05470 PF01761 3-dehydroquinate synthase C3B54_RS05475 PF01202 Shikimate kinase C3B54_RS05480 PF01264 Chorismate synthase C3B54_RS05485 PF08501 Shikimate dehydrogenase substrate binding domain C3B54_RS05485 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C3B54_RS05485 PF01488 Shikimate / quinate 5-dehydrogenase C3B54_RS05495 PF03652 Holliday junction resolvase C3B54_RS05500 PF02272 DHHA1 domain C3B54_RS05500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3B54_RS05500 PF01411 tRNA synthetases class II (A) C3B54_RS05505 PF01479 S4 domain C3B54_RS05505 PF00163 Ribosomal protein S4/S9 N-terminal domain C3B54_RS05510 PF00004 ATPase family associated with various cellular activities (AAA) C3B54_RS05510 PF16193 AAA C-terminal domain C3B54_RS05510 PF12002 MgsA AAA+ ATPase C terminal C3B54_RS05515 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3B54_RS05530 PF04607 Region found in RelA / SpoT proteins C3B54_RS05530 PF13291 ACT domain C3B54_RS05530 PF02824 TGS domain C3B54_RS05535 PF02355 Protein export membrane protein C3B54_RS05535 PF07549 SecD/SecF GG Motif C3B54_RS05540 PF02355 Protein export membrane protein C3B54_RS05540 PF07549 SecD/SecF GG Motif C3B54_RS05545 PF02699 Preprotein translocase subunit C3B54_RS05550 PF17864 RuvB AAA lid domain C3B54_RS05550 PF05496 Holliday junction DNA helicase RuvB P-loop domain C3B54_RS05550 PF05491 RuvB C-terminal winged helix domain C3B54_RS05555 PF01330 RuvA N terminal domain C3B54_RS05555 PF07499 RuvA, C-terminal domain C3B54_RS05560 PF02075 Crossover junction endodeoxyribonuclease RuvC C3B54_RS05565 PF01709 Transcriptional regulator C3B54_RS05570 PF01174 SNO glutamine amidotransferase family C3B54_RS05575 PF01680 SOR/SNZ family C3B54_RS05580 PF01230 HIT domain C3B54_RS05585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3B54_RS05585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3B54_RS05585 PF03129 Anticodon binding domain C3B54_RS05625 PF02896 PEP-utilising enzyme, TIM barrel domain C3B54_RS05625 PF00391 PEP-utilising enzyme, mobile domain C3B54_RS05625 PF05524 PEP-utilising enzyme, N-terminal C3B54_RS05635 PF00107 Zinc-binding dehydrogenase C3B54_RS05635 PF08240 Alcohol dehydrogenase GroES-like domain C3B54_RS05640 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3B54_RS05645 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3B54_RS05645 PF02378 Phosphotransferase system, EIIC C3B54_RS05645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C3B54_RS05650 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C3B54_RS05650 PF02378 Phosphotransferase system, EIIC C3B54_RS05655 PF00455 DeoR C terminal sensor domain C3B54_RS05655 PF08220 DeoR-like helix-turn-helix domain C3B54_RS05660 PF00294 pfkB family carbohydrate kinase C3B54_RS05670 PF02913 FAD linked oxidases, C-terminal domain C3B54_RS05670 PF01565 FAD binding domain C3B54_RS05685 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS05685 PF00072 Response regulator receiver domain C3B54_RS05695 PF00056 lactate/malate dehydrogenase, NAD binding domain C3B54_RS05695 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C3B54_RS05705 PF00356 Bacterial regulatory proteins, lacI family C3B54_RS05725 PF01699 Sodium/calcium exchanger protein C3B54_RS05730 PF01047 MarR family C3B54_RS05730 PF00480 ROK family C3B54_RS05735 PF13407 Periplasmic binding protein domain C3B54_RS05740 PF00005 ABC transporter C3B54_RS05745 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS05750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C3B54_RS05750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C3B54_RS05760 PF07690 Major Facilitator Superfamily C3B54_RS05770 PF01926 50S ribosome-binding GTPase C3B54_RS05770 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C3B54_RS05775 PF02224 Cytidylate kinase C3B54_RS05780 PF02153 Prephenate dehydrogenase C3B54_RS05785 PF01479 S4 domain C3B54_RS05785 PF00849 RNA pseudouridylate synthase C3B54_RS05790 PF04079 Segregation and condensation complex subunit ScpB C3B54_RS05795 PF02616 Segregation and condensation protein ScpA C3B54_RS05800 PF13614 AAA domain C3B54_RS05805 PF00589 Phage integrase family C3B54_RS05805 PF02899 Phage integrase, N-terminal SAM-like domain C3B54_RS05815 PF06418 CTP synthase N-terminus C3B54_RS05815 PF00117 Glutamine amidotransferase class-I C3B54_RS05820 PF02463 RecF/RecN/SMC N terminal domain C3B54_RS05825 PF01513 ATP-NAD kinase C3B54_RS05830 PF01479 S4 domain C3B54_RS05830 PF01728 FtsJ-like methyltransferase C3B54_RS05840 PF18407 GCN5-related N-acetyltransferase like domain C3B54_RS05840 PF13344 Haloacid dehalogenase-like hydrolase C3B54_RS05865 PF00579 tRNA synthetases class I (W and Y) C3B54_RS05875 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS05880 PF00005 ABC transporter C3B54_RS05900 PF00206 Lyase C3B54_RS05900 PF14698 Argininosuccinate lyase C-terminal C3B54_RS05905 PF00764 Arginosuccinate synthase C3B54_RS05910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3B54_RS05910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3B54_RS05915 PF00696 Amino acid kinase family C3B54_RS05920 PF01960 ArgJ family C3B54_RS05925 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3B54_RS05925 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3B54_RS05930 PF03483 B3/4 domain C3B54_RS05930 PF03484 tRNA synthetase B5 domain C3B54_RS05930 PF03147 Ferredoxin-fold anticodon binding domain C3B54_RS05930 PF01588 Putative tRNA binding domain C3B54_RS05930 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C3B54_RS05935 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C3B54_RS05935 PF01409 tRNA synthetases class II core domain (F) C3B54_RS05940 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3B54_RS05940 PF00588 SpoU rRNA Methylase family C3B54_RS05945 PF00453 Ribosomal protein L20 C3B54_RS05950 PF01632 Ribosomal protein L35 C3B54_RS05955 PF00707 Translation initiation factor IF-3, C-terminal domain C3B54_RS05955 PF05198 Translation initiation factor IF-3, N-terminal domain C3B54_RS05980 PF00977 Histidine biosynthesis protein C3B54_RS05985 PF00117 Glutamine amidotransferase class-I C3B54_RS05990 PF00475 Imidazoleglycerol-phosphate dehydratase C3B54_RS05995 PF00155 Aminotransferase class I and II C3B54_RS06005 PF01726 LexA DNA binding domain C3B54_RS06005 PF00717 Peptidase S24-like C3B54_RS06015 PF01926 50S ribosome-binding GTPase C3B54_RS06015 PF13167 GTP-binding GTPase N-terminal C3B54_RS06015 PF16360 GTP-binding GTPase Middle Region C3B54_RS06025 PF08240 Alcohol dehydrogenase GroES-like domain C3B54_RS06025 PF00107 Zinc-binding dehydrogenase C3B54_RS06045 PF01850 PIN domain C3B54_RS06060 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system C3B54_RS06075 PF00005 ABC transporter C3B54_RS06095 PF01850 PIN domain C3B54_RS06115 PF00171 Aldehyde dehydrogenase family C3B54_RS06120 PF08402 TOBE domain C3B54_RS06120 PF00005 ABC transporter C3B54_RS06125 PF13416 Bacterial extracellular solute-binding protein C3B54_RS06130 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS06135 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS06145 PF02073 Thermophilic metalloprotease (M29) C3B54_RS06150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3B54_RS06150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3B54_RS06155 PF03437 BtpA family C3B54_RS06160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3B54_RS06160 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3B54_RS06165 PF02734 DAK2 domain C3B54_RS06170 PF02733 Dak1 domain C3B54_RS06175 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS06180 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS06185 PF00005 ABC transporter C3B54_RS06195 PF08220 DeoR-like helix-turn-helix domain C3B54_RS06195 PF00455 DeoR C terminal sensor domain C3B54_RS06200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3B54_RS06200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3B54_RS06210 PF08240 Alcohol dehydrogenase GroES-like domain C3B54_RS06210 PF00107 Zinc-binding dehydrogenase C3B54_RS06215 PF01791 DeoC/LacD family aldolase C3B54_RS06220 PF00294 pfkB family carbohydrate kinase C3B54_RS06235 PF02515 CoA-transferase family III C3B54_RS06240 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS06245 PF03328 HpcH/HpaI aldolase/citrate lyase family C3B54_RS06250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3B54_RS06255 PF00378 Enoyl-CoA hydratase/isomerase C3B54_RS06260 PF00005 ABC transporter C3B54_RS06260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3B54_RS06265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3B54_RS06265 PF00005 ABC transporter C3B54_RS06270 PF02515 CoA-transferase family III C3B54_RS06275 PF00171 Aldehyde dehydrogenase family C3B54_RS06280 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS06280 PF12911 N-terminal TM domain of oligopeptide transport permease C C3B54_RS06285 PF00106 short chain dehydrogenase C3B54_RS06290 PF00180 Isocitrate/isopropylmalate dehydrogenase C3B54_RS06310 PF00356 Bacterial regulatory proteins, lacI family C3B54_RS06320 PF13378 Enolase C-terminal domain-like C3B54_RS06325 PF00701 Dihydrodipicolinate synthetase family C3B54_RS06340 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3B54_RS06340 PF13378 Enolase C-terminal domain-like C3B54_RS06400 PF13333 Integrase core domain C3B54_RS06400 PF00665 Integrase core domain C3B54_RS06400 PF13276 HTH-like domain C3B54_RS06450 PF02384 N-6 DNA Methylase C3B54_RS06450 PF12161 HsdM N-terminal domain C3B54_RS06455 PF01420 Type I restriction modification DNA specificity domain C3B54_RS06460 PF18766 SWI2/SNF2 ATPase C3B54_RS06460 PF12008 Type I restriction and modification enzyme - subunit R C terminal C3B54_RS06460 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C3B54_RS06470 PF05154 TM2 domain C3B54_RS06480 PF07687 Peptidase dimerisation domain C3B54_RS06480 PF01546 Peptidase family M20/M25/M40 C3B54_RS06485 PF00294 pfkB family carbohydrate kinase C3B54_RS06490 PF01156 Inosine-uridine preferring nucleoside hydrolase C3B54_RS06500 PF02126 Phosphotriesterase family C3B54_RS06505 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS06510 PF00005 ABC transporter C3B54_RS06515 PF13407 Periplasmic binding protein domain C3B54_RS06520 PF00356 Bacterial regulatory proteins, lacI family C3B54_RS06525 PF01850 PIN domain C3B54_RS06530 PF01402 Ribbon-helix-helix protein, copG family C3B54_RS06535 PF01614 Bacterial transcriptional regulator C3B54_RS06535 PF09339 IclR helix-turn-helix domain C3B54_RS06540 PF00108 Thiolase, N-terminal domain C3B54_RS06540 PF02803 Thiolase, C-terminal domain C3B54_RS06545 PF01144 Coenzyme A transferase C3B54_RS06550 PF01144 Coenzyme A transferase C3B54_RS06560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3B54_RS06560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3B54_RS06565 PF00465 Iron-containing alcohol dehydrogenase C3B54_RS06570 PF00171 Aldehyde dehydrogenase family C3B54_RS06575 PF02954 Bacterial regulatory protein, Fis family C3B54_RS06580 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS06585 PF00005 ABC transporter C3B54_RS06605 PF07859 alpha/beta hydrolase fold C3B54_RS06625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3B54_RS06630 PF00248 Aldo/keto reductase family C3B54_RS06635 PF01070 FMN-dependent dehydrogenase C3B54_RS06640 PF00920 Dehydratase family C3B54_RS06645 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3B54_RS06650 PF00171 Aldehyde dehydrogenase family C3B54_RS06655 PF01070 FMN-dependent dehydrogenase C3B54_RS06665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3B54_RS06675 PF00248 Aldo/keto reductase family C3B54_RS06680 PF13378 Enolase C-terminal domain-like C3B54_RS06680 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3B54_RS06690 PF00005 ABC transporter C3B54_RS06695 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS06700 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS06705 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3B54_RS06705 PF13378 Enolase C-terminal domain-like C3B54_RS06720 PF07729 FCD domain C3B54_RS06720 PF00392 Bacterial regulatory proteins, gntR family C3B54_RS06725 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system C3B54_RS06730 PF11455 Protein of unknown function (DUF3018) C3B54_RS06750 PF00881 Nitroreductase family C3B54_RS06750 PF01996 F420-0:Gamma-glutamyl ligase C3B54_RS06770 PF05175 Methyltransferase small domain C3B54_RS06775 PF01678 Diaminopimelate epimerase C3B54_RS06785 PF00919 Uncharacterized protein family UPF0004 C3B54_RS06785 PF04055 Radical SAM superfamily C3B54_RS06790 PF02631 RecX family C3B54_RS06795 PF00154 recA bacterial DNA recombination protein C3B54_RS06810 PF00994 Probable molybdopterin binding domain C3B54_RS06810 PF02464 Competence-damaged protein C3B54_RS06810 PF18146 Damage-inducible protein CinA KH domain C3B54_RS06815 PF01066 CDP-alcohol phosphatidyltransferase C3B54_RS06820 PF01580 FtsK/SpoIIIE family C3B54_RS06820 PF09397 Ftsk gamma domain C3B54_RS06820 PF17854 FtsK alpha domain C3B54_RS06825 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C3B54_RS06825 PF17770 Ribonuclease J C-terminal domain C3B54_RS06825 PF12706 Beta-lactamase superfamily domain C3B54_RS06830 PF00701 Dihydrodipicolinate synthetase family C3B54_RS06835 PF00196 Bacterial regulatory proteins, luxR family C3B54_RS06835 PF00072 Response regulator receiver domain C3B54_RS06840 PF02511 Thymidylate synthase complementing protein C3B54_RS06855 PF02566 OsmC-like protein C3B54_RS06860 PF08338 Domain of unknown function (DUF1731) C3B54_RS06860 PF01370 NAD dependent epimerase/dehydratase family C3B54_RS06865 PF01381 Helix-turn-helix C3B54_RS06870 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB C3B54_RS06880 PF05173 Dihydrodipicolinate reductase, C-terminus C3B54_RS06880 PF01113 Dihydrodipicolinate reductase, N-terminus C3B54_RS06895 PF02583 Metal-sensitive transcriptional repressor C3B54_RS06900 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3B54_RS06900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3B54_RS06910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3B54_RS06925 PF00202 Aminotransferase class-III C3B54_RS06935 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C3B54_RS06935 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C3B54_RS06940 PF01580 FtsK/SpoIIIE family C3B54_RS06940 PF12538 DNA transporter C3B54_RS06960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3B54_RS06960 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3B54_RS06965 PF01451 Low molecular weight phosphotyrosine protein phosphatase C3B54_RS06970 PF00230 Major intrinsic protein C3B54_RS06975 PF03883 Peroxide stress protein YaaA C3B54_RS06980 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C3B54_RS06985 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3B54_RS06985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3B54_RS06990 PF00231 ATP synthase C3B54_RS06995 PF00306 ATP synthase alpha/beta chain, C terminal domain C3B54_RS06995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3B54_RS06995 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3B54_RS07000 PF00213 ATP synthase delta (OSCP) subunit C3B54_RS07005 PF00430 ATP synthase B/B' CF(0) C3B54_RS07010 PF00137 ATP synthase subunit C C3B54_RS07015 PF00119 ATP synthase A chain C3B54_RS07030 PF00953 Glycosyl transferase family 4 C3B54_RS07035 PF01300 Telomere recombination C3B54_RS07045 PF17827 PrmC N-terminal domain C3B54_RS07050 PF03462 PCRF domain C3B54_RS07050 PF00472 RF-1 domain C3B54_RS07055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3B54_RS07055 PF07498 Rho termination factor, N-terminal domain C3B54_RS07055 PF07497 Rho termination factor, RNA-binding domain C3B54_RS07060 PF08544 GHMP kinases C terminal C3B54_RS07060 PF00288 GHMP kinases N terminal domain C3B54_RS07065 PF00291 Pyridoxal-phosphate dependent enzyme C3B54_RS07070 PF03447 Homoserine dehydrogenase, NAD binding domain C3B54_RS07070 PF00742 Homoserine dehydrogenase C3B54_RS07070 PF01842 ACT domain C3B54_RS07075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3B54_RS07075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3B54_RS07080 PF03485 Arginyl tRNA synthetase N terminal domain C3B54_RS07080 PF05746 DALR anticodon binding domain C3B54_RS07080 PF00750 tRNA synthetases class I (R) C3B54_RS07100 PF12728 Helix-turn-helix domain C3B54_RS07110 PF00196 Bacterial regulatory proteins, luxR family C3B54_RS07110 PF00072 Response regulator receiver domain C3B54_RS07115 PF01381 Helix-turn-helix C3B54_RS07115 PF08671 Anti-repressor SinI C3B54_RS07120 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain C3B54_RS07120 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain C3B54_RS07125 PF00106 short chain dehydrogenase C3B54_RS07135 PF01425 Amidase C3B54_RS07145 PF03167 Uracil DNA glycosylase superfamily C3B54_RS07155 PF01053 Cys/Met metabolism PLP-dependent enzyme C3B54_RS07160 PF00561 alpha/beta hydrolase fold C3B54_RS07165 PF01256 Carbohydrate kinase C3B54_RS07165 PF03853 YjeF-related protein N-terminus C3B54_RS07170 PF01595 Cyclin M transmembrane N-terminal domain C3B54_RS07170 PF00571 CBS domain C3B54_RS07175 PF03471 Transporter associated domain C3B54_RS07175 PF01595 Cyclin M transmembrane N-terminal domain C3B54_RS07175 PF00571 CBS domain C3B54_RS07180 PF00676 Dehydrogenase E1 component C3B54_RS07180 PF16870 2-oxoglutarate dehydrogenase C-terminal C3B54_RS07180 PF02779 Transketolase, pyrimidine binding domain C3B54_RS07180 PF16078 2-oxoglutarate dehydrogenase N-terminus C3B54_RS07180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3B54_RS07190 PF04542 Sigma-70 region 2 C3B54_RS07190 PF08281 Sigma-70, region 4 C3B54_RS07195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3B54_RS07200 PF03193 RsgA GTPase C3B54_RS07205 PF00459 Inositol monophosphatase family C3B54_RS07220 PF00005 ABC transporter C3B54_RS07230 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS07235 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS07240 PF01547 Bacterial extracellular solute-binding protein C3B54_RS07250 PF07690 Major Facilitator Superfamily C3B54_RS07255 PF01668 SmpB protein C3B54_RS07260 PF02687 FtsX-like permease family C3B54_RS07260 PF18075 FtsX extracellular domain C3B54_RS07265 PF00005 ABC transporter C3B54_RS07270 PF00472 RF-1 domain C3B54_RS07270 PF03462 PCRF domain C3B54_RS07320 PF00106 short chain dehydrogenase C3B54_RS07325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3B54_RS07325 PF00364 Biotin-requiring enzyme C3B54_RS07325 PF02817 e3 binding domain C3B54_RS07330 PF00676 Dehydrogenase E1 component C3B54_RS07340 PF00392 Bacterial regulatory proteins, gntR family C3B54_RS07340 PF07729 FCD domain C3B54_RS07345 PF00171 Aldehyde dehydrogenase family C3B54_RS07350 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C3B54_RS07350 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C3B54_RS07360 PF01321 Creatinase/Prolidase N-terminal domain C3B54_RS07360 PF00557 Metallopeptidase family M24 C3B54_RS07365 PF13407 Periplasmic binding protein domain C3B54_RS07370 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS07375 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS07380 PF00005 ABC transporter C3B54_RS07400 PF00437 Type II/IV secretion system protein C3B54_RS07410 PF02535 ZIP Zinc transporter C3B54_RS07415 PF01725 Ham1 family C3B54_RS07420 PF03725 3' exoribonuclease family, domain 2 C3B54_RS07420 PF01138 3' exoribonuclease family, domain 1 C3B54_RS07425 PF08245 Mur ligase middle domain C3B54_RS07435 PF04244 Deoxyribodipyrimidine photo-lyase-related protein C3B54_RS07440 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C3B54_RS07440 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C3B54_RS07450 PF13180 PDZ domain C3B54_RS07470 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C3B54_RS07470 PF01266 FAD dependent oxidoreductase C3B54_RS07475 PF08402 TOBE domain C3B54_RS07475 PF00005 ABC transporter C3B54_RS07480 PF17912 MalK OB fold domain C3B54_RS07480 PF00005 ABC transporter C3B54_RS07485 PF00528 Binding-protein-dependent transport system inner membrane component C3B54_RS07505 PF00248 Aldo/keto reductase family C3B54_RS07510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3B54_RS07510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3B54_RS07525 PF00270 DEAD/DEAH box helicase C3B54_RS07525 PF00271 Helicase conserved C-terminal domain C3B54_RS07535 PF03699 Uncharacterised protein family (UPF0182) C3B54_RS07555 PF00570 HRDC domain C3B54_RS07555 PF00580 UvrD/REP helicase N-terminal domain C3B54_RS07555 PF13361 UvrD-like helicase C-terminal domain C3B54_RS07560 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain C3B54_RS07560 PF00293 NUDIX domain C3B54_RS07560 PF09297 NADH pyrophosphatase zinc ribbon domain C3B54_RS07575 PF00580 UvrD/REP helicase N-terminal domain C3B54_RS07575 PF13361 UvrD-like helicase C-terminal domain C3B54_RS07600 PF00270 DEAD/DEAH box helicase C3B54_RS07600 PF00271 Helicase conserved C-terminal domain C3B54_RS07605 PF02811 PHP domain C3B54_RS07610 PF00557 Metallopeptidase family M24 C3B54_RS07610 PF05195 Aminopeptidase P, N-terminal domain C3B54_RS07615 PF00571 CBS domain C3B54_RS07615 PF03448 MgtE intracellular N domain C3B54_RS07615 PF01769 Divalent cation transporter C3B54_RS07625 PF10609 NUBPL iron-transfer P-loop NTPase C3B54_RS07625 PF01883 Iron-sulfur cluster assembly protein C3B54_RS07635 PF01596 O-methyltransferase C3B54_RS07645 PF07687 Peptidase dimerisation domain C3B54_RS07645 PF01546 Peptidase family M20/M25/M40 C3B54_RS07650 PF14602 Hexapeptide repeat of succinyl-transferase C3B54_RS07650 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle C3B54_RS07655 PF00285 Citrate synthase, C-terminal domain C3B54_RS07660 PF00155 Aminotransferase class I and II C3B54_RS07665 PF00037 4Fe-4S binding domain C3B54_RS07675 PF01063 Amino-transferase class IV C3B54_RS07680 PF00180 Isocitrate/isopropylmalate dehydrogenase C3B54_RS07685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3B54_RS07685 PF01842 ACT domain C3B54_RS07685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3B54_RS07700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C3B54_RS07700 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C3B54_RS07705 PF10369 Small subunit of acetolactate synthase C3B54_RS07710 PF00205 Thiamine pyrophosphate enzyme, central domain C3B54_RS07710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3B54_RS07710 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3B54_RS07715 PF00920 Dehydratase family C3B54_RS07725 PF02358 Trehalose-phosphatase C3B54_RS07730 PF00982 Glycosyltransferase family 20 C3B54_RS07735 PF01261 Xylose isomerase-like TIM barrel C3B54_RS07755 PF07885 Ion channel C3B54_RS07775 PF07729 FCD domain C3B54_RS07775 PF00392 Bacterial regulatory proteins, gntR family C3B54_RS07790 PF01261 Xylose isomerase-like TIM barrel C3B54_RS07795 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term C3B54_RS07795 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C3B54_RS07810 PF00581 Rhodanese-like domain C3B54_RS07810 PF12368 Rhodanase C-terminal C3B54_RS07810 PF17773 UPF0176 acylphosphatase like domain C3B54_RS07820 PF07804 HipA-like C-terminal domain C3B54_RS07820 PF13657 HipA N-terminal domain C3B54_RS07840 PF00578 AhpC/TSA family C3B54_RS07850 PF02467 Transcription factor WhiB C3B54_RS07855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS07855 PF12282 Signal transduction histidine kinase C3B54_RS07855 PF07568 Histidine kinase C3B54_RS07880 PF07517 SecA DEAD-like domain C3B54_RS07880 PF01043 SecA preprotein cross-linking domain C3B54_RS07880 PF07516 SecA Wing and Scaffold domain C3B54_RS07885 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus C3B54_RS07885 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C3B54_RS07890 PF00156 Phosphoribosyl transferase domain C3B54_RS07895 PF10646 Sporulation and spore germination C3B54_RS07895 PF10647 Lipoprotein LpqB beta-propeller domain C3B54_RS07900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS07900 PF00672 HAMP domain C3B54_RS07900 PF00512 His Kinase A (phospho-acceptor) domain C3B54_RS07905 PF00072 Response regulator receiver domain C3B54_RS07905 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS07910 PF05221 S-adenosyl-L-homocysteine hydrolase C3B54_RS07910 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C3B54_RS07915 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3B54_RS07915 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3B54_RS07915 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3B54_RS07915 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3B54_RS07940 PF02467 Transcription factor WhiB C3B54_RS07945 PF16363 GDP-mannose 4,6 dehydratase C3B54_RS07950 PF01238 Phosphomannose isomerase type I C3B54_RS07960 PF02348 Cytidylyltransferase C3B54_RS07965 PF03102 NeuB family C3B54_RS07965 PF08666 SAF domain C3B54_RS07980 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase C3B54_RS07980 PF01476 LysM domain C3B54_RS07990 PF00535 Glycosyl transferase family 2 C3B54_RS07990 PF00534 Glycosyl transferases group 1 C3B54_RS08010 PF14524 Wzt C-terminal domain C3B54_RS08010 PF00005 ABC transporter C3B54_RS08015 PF01061 ABC-2 type transporter C3B54_RS08020 PF00483 Nucleotidyl transferase C3B54_RS08025 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase C3B54_RS08030 PF16363 GDP-mannose 4,6 dehydratase C3B54_RS08035 PF04321 RmlD substrate binding domain C3B54_RS08045 PF00731 AIR carboxylase C3B54_RS08050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C3B54_RS08050 PF02222 ATP-grasp domain C3B54_RS08055 PF03099 Biotin/lipoate A/B protein ligase family C3B54_RS08055 PF02237 Biotin protein ligase C terminal domain C3B54_RS08055 PF08279 HTH domain C3B54_RS08060 PF00005 ABC transporter C3B54_RS08060 PF00664 ABC transporter transmembrane region C3B54_RS08065 PF16363 GDP-mannose 4,6 dehydratase C3B54_RS08075 PF01370 NAD dependent epimerase/dehydratase family C3B54_RS08095 PF01039 Carboxyl transferase domain C3B54_RS08110 PF00535 Glycosyl transferase family 2 C3B54_RS08120 PF05958 tRNA (Uracil-5-)-methyltransferase C3B54_RS08120 PF01938 TRAM domain C3B54_RS08125 PF02545 Maf-like protein C3B54_RS08130 PF00364 Biotin-requiring enzyme C3B54_RS08130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3B54_RS08130 PF02785 Biotin carboxylase C-terminal domain C3B54_RS08130 PF00289 Biotin carboxylase, N-terminal domain C3B54_RS08135 PF01370 NAD dependent epimerase/dehydratase family C3B54_RS08140 PF01048 Phosphorylase superfamily C3B54_RS08145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3B54_RS08145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3B54_RS08145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3B54_RS08145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3B54_RS08155 PF00962 Adenosine/AMP deaminase C3B54_RS08160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3B54_RS08165 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS08170 PF02653 Branched-chain amino acid transport system / permease component C3B54_RS08175 PF00005 ABC transporter C3B54_RS08180 PF02608 ABC transporter substrate-binding protein PnrA-like C3B54_RS08190 PF01050 Mannose-6-phosphate isomerase C3B54_RS08190 PF00483 Nucleotidyl transferase C3B54_RS08195 PF13439 Glycosyltransferase Family 4 C3B54_RS08195 PF00534 Glycosyl transferases group 1 C3B54_RS08200 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3B54_RS08210 PF00890 FAD binding domain C3B54_RS08210 PF02910 Fumarate reductase flavoprotein C-term C3B54_RS08215 PF13085 2Fe-2S iron-sulfur cluster binding domain C3B54_RS08220 PF03372 Endonuclease/Exonuclease/phosphatase family C3B54_RS08225 PF00579 tRNA synthetases class I (W and Y) C3B54_RS08230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3B54_RS08230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3B54_RS08230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3B54_RS08235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3B54_RS08235 PF01872 RibD C-terminal domain C3B54_RS08240 PF00677 Lumazine binding domain C3B54_RS08245 PF00925 GTP cyclohydrolase II C3B54_RS08245 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3B54_RS08250 PF00885 6,7-dimethyl-8-ribityllumazine synthase C3B54_RS08275 PF00005 ABC transporter C3B54_RS08280 PF00005 ABC transporter C3B54_RS08280 PF00664 ABC transporter transmembrane region C3B54_RS08285 PF00857 Isochorismatase family C3B54_RS08290 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family C3B54_RS08300 PF00535 Glycosyl transferase family 2 C3B54_RS08310 PF17912 MalK OB fold domain C3B54_RS08310 PF00005 ABC transporter C3B54_RS08320 PF00588 SpoU rRNA Methylase family C3B54_RS08320 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3B54_RS08325 PF01406 tRNA synthetases class I (C) catalytic domain C3B54_RS08325 PF09190 DALR domain C3B54_RS08330 PF02542 YgbB family C3B54_RS08330 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C3B54_RS08335 PF02559 CarD-like/TRCF domain C3B54_RS08345 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS08345 PF00072 Response regulator receiver domain C3B54_RS08350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3B54_RS08350 PF00512 His Kinase A (phospho-acceptor) domain C3B54_RS08355 PF01895 PhoU domain C3B54_RS08360 PF00300 Histidine phosphatase superfamily (branch 1) C3B54_RS08370 PF00486 Transcriptional regulatory protein, C terminal C3B54_RS08375 PF13089 Polyphosphate kinase N-terminal domain C3B54_RS08375 PF02503 Polyphosphate kinase middle domain C3B54_RS08375 PF13090 Polyphosphate kinase C-terminal domain 2 C3B54_RS08375 PF17941 Polyphosphate kinase C-terminal domain 1 C3B54_RS08410 PF01757 Acyltransferase family C3B54_RS08415 PF00534 Glycosyl transferases group 1 C3B54_RS08415 PF13439 Glycosyltransferase Family 4 C3B54_RS08435 PF02517 CPBP intramembrane metalloprotease C3B54_RS08440 PF10509 Galactokinase galactose-binding signature C3B54_RS08440 PF08544 GHMP kinases C terminal C3B54_RS08440 PF00288 GHMP kinases N terminal domain C3B54_RS08445 PF06039 Malate:quinone oxidoreductase (Mqo) C3B54_RS08450 PF01925 Sulfite exporter TauE/SafE C3B54_RS08455 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3B54_RS08455 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3B54_RS08460 PF13840 ACT domain C3B54_RS08460 PF00696 Amino acid kinase family C3B54_RS08460 PF01842 ACT domain C3B54_RS08470 PF00633 Helix-hairpin-helix motif C3B54_RS08470 PF02132 RecR protein C3B54_RS08470 PF13662 Toprim domain C3B54_RS08475 PF12169 DNA polymerase III subunits gamma and tau domain III C3B54_RS08495 PF00871 Acetokinase family C3B54_RS08500 PF07085 DRTGG domain C3B54_RS08500 PF01515 Phosphate acetyl/butaryl transferase C3B54_RS08515 PF00665 Integrase core domain C3B54_RS08520 PF01757 Acyltransferase family C3B54_RS08565 PF00542 Ribosomal protein L7/L12 C-terminal domain C3B54_RS08565 PF16320 Ribosomal protein L7/L12 dimerisation domain C3B54_RS08570 PF00466 Ribosomal protein L10 C3B54_RS08575 PF00687 Ribosomal protein L1p/L10e family C3B54_RS08580 PF00298 Ribosomal protein L11, RNA binding domain C3B54_RS08580 PF03946 Ribosomal protein L11, N-terminal domain C3B54_RS08585 PF02357 Transcription termination factor nusG C3B54_RS08590 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C3B54_RS08620 PF00128 Alpha amylase, catalytic domain C3B54_RS08625 PF04225 Opacity-associated protein A LysM-like domain C3B54_RS08625 PF01551 Peptidase family M23 C3B54_RS08630 PF00459 Inositol monophosphatase family C3B54_RS08645 PF04461 Protein of unknown function (DUF520) C3B54_RS08650 PF13396 Phospholipase_D-nuclease N-terminal C3B54_RS08650 PF13091 PLD-like domain C3B54_RS08660 PF08241 Methyltransferase domain C3B54_RS08665 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3B54_RS08670 PF00348 Polyprenyl synthetase C3B54_RS08675 PF01209 ubiE/COQ5 methyltransferase family C3B54_RS08680 PF00425 chorismate binding enzyme C3B54_RS08685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3B54_RS08700 PF01040 UbiA prenyltransferase family C3B54_RS08705 PF13193 AMP-binding enzyme C-terminal domain C3B54_RS08705 PF00501 AMP-binding enzyme C3B54_RS08710 PF00378 Enoyl-CoA hydratase/isomerase C3B54_RS08715 PF00005 ABC transporter C3B54_RS08715 PF00664 ABC transporter transmembrane region