locus-tag class description KS4_RS00005 PF11638 DnaA N-terminal domain KS4_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix KS4_RS00005 PF00308 Bacterial dnaA protein KS4_RS00035 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KS4_RS00035 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KS4_RS00035 PF06827 Zinc finger found in FPG and IleRS KS4_RS00050 PF07726 ATPase family associated with various cellular activities (AAA) KS4_RS00050 PF17863 AAA lid domain KS4_RS00090 PF17941 Polyphosphate kinase C-terminal domain 1 KS4_RS00090 PF02503 Polyphosphate kinase middle domain KS4_RS00090 PF13090 Polyphosphate kinase C-terminal domain 2 KS4_RS00090 PF13089 Polyphosphate kinase N-terminal domain KS4_RS00095 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KS4_RS00110 PF13439 Glycosyltransferase Family 4 KS4_RS00110 PF00534 Glycosyl transferases group 1 KS4_RS00115 PF03466 LysR substrate binding domain KS4_RS00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS4_RS00120 PF01493 GXGXG motif KS4_RS00120 PF04898 Glutamate synthase central domain KS4_RS00120 PF01645 Conserved region in glutamate synthase KS4_RS00120 PF00310 Glutamine amidotransferases class-II KS4_RS00125 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS00125 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KS4_RS00130 PF01758 Sodium Bile acid symporter family KS4_RS00140 PF17991 Thioredoxin like C-terminal domain KS4_RS00140 PF02683 Cytochrome C biogenesis protein transmembrane region KS4_RS00140 PF00578 AhpC/TSA family KS4_RS00150 PF02567 Phenazine biosynthesis-like protein KS4_RS00165 PF01914 MarC family integral membrane protein KS4_RS00190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KS4_RS00190 PF02824 TGS domain KS4_RS00190 PF03129 Anticodon binding domain KS4_RS00190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS4_RS00225 PF01554 MatE KS4_RS00230 PF00155 Aminotransferase class I and II KS4_RS00235 PF13286 Phosphohydrolase-associated domain KS4_RS00235 PF01966 HD domain KS4_RS00240 PF04070 Domain of unknown function (DUF378) KS4_RS00250 PF02469 Fasciclin domain KS4_RS00255 PF02390 Putative methyltransferase KS4_RS00270 PF02887 Pyruvate kinase, alpha/beta domain KS4_RS00270 PF00224 Pyruvate kinase, barrel domain KS4_RS00275 PF00158 Sigma-54 interaction domain KS4_RS00275 PF00072 Response regulator receiver domain KS4_RS00275 PF02954 Bacterial regulatory protein, Fis family KS4_RS00280 PF01554 MatE KS4_RS00335 PF00534 Glycosyl transferases group 1 KS4_RS00340 PF02397 Bacterial sugar transferase KS4_RS00350 PF01709 Transcriptional regulator KS4_RS00355 PF00708 Acylphosphatase KS4_RS00375 PF00561 alpha/beta hydrolase fold KS4_RS00390 PF00144 Beta-lactamase KS4_RS00410 PF16363 GDP-mannose 4,6 dehydratase KS4_RS00420 PF01209 ubiE/COQ5 methyltransferase family KS4_RS00460 PF01272 Transcription elongation factor, GreA/GreB, C-term KS4_RS00460 PF03449 Transcription elongation factor, N-terminal KS4_RS00490 PF01055 Glycosyl hydrolases family 31 KS4_RS00490 PF17137 Domain of unknown function (DUF5110) KS4_RS00490 PF13802 Galactose mutarotase-like KS4_RS00490 PF16338 Domain of unknown function (DUF4968) KS4_RS00495 PF07478 D-ala D-ala ligase C-terminus KS4_RS00495 PF01820 D-ala D-ala ligase N-terminus KS4_RS00500 PF00701 Dihydrodipicolinate synthetase family KS4_RS00515 PF00474 Sodium:solute symporter family KS4_RS00540 PF14535 AMP-binding enzyme C-terminal domain KS4_RS00540 PF00501 AMP-binding enzyme KS4_RS00550 PF14535 AMP-binding enzyme C-terminal domain KS4_RS00550 PF00501 AMP-binding enzyme KS4_RS00580 PF05785 Rho-activating domain of cytotoxic necrotizing factor KS4_RS00580 PF18807 Tripartite Tc toxins repeat KS4_RS00600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS00600 PF00672 HAMP domain KS4_RS00615 PF00115 Cytochrome C and Quinol oxidase polypeptide I KS4_RS00625 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KS4_RS00625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KS4_RS00630 PF13746 4Fe-4S dicluster domain KS4_RS00630 PF12801 4Fe-4S binding domain KS4_RS00630 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KS4_RS00645 PF00403 Heavy-metal-associated domain KS4_RS00650 PF03597 Cytochrome oxidase maturation protein cbb3-type KS4_RS00655 PF00199 Catalase KS4_RS00655 PF06628 Catalase-related immune-responsive KS4_RS00665 PF04127 DNA / pantothenate metabolism flavoprotein KS4_RS00665 PF02441 Flavoprotein KS4_RS00680 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS00680 PF00072 Response regulator receiver domain KS4_RS00685 PF00675 Insulinase (Peptidase family M16) KS4_RS00685 PF05193 Peptidase M16 inactive domain KS4_RS00695 PF13344 Haloacid dehalogenase-like hydrolase KS4_RS00700 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KS4_RS00700 PF00364 Biotin-requiring enzyme KS4_RS00700 PF02817 e3 binding domain KS4_RS00710 PF00156 Phosphoribosyl transferase domain KS4_RS00730 PF08334 Type II secretion system (T2SS), protein G KS4_RS00730 PF07963 Prokaryotic N-terminal methylation motif KS4_RS00745 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KS4_RS00760 PF01926 50S ribosome-binding GTPase KS4_RS00760 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KS4_RS00775 PF00814 Glycoprotease family KS4_RS00780 PF01966 HD domain KS4_RS00800 PF00111 2Fe-2S iron-sulfur cluster binding domain KS4_RS00835 PF00916 Sulfate permease family KS4_RS00835 PF01740 STAS domain KS4_RS00845 PF01638 HxlR-like helix-turn-helix KS4_RS00860 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS00885 PF02569 Pantoate-beta-alanine ligase KS4_RS00895 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family KS4_RS00900 PF17827 PrmC N-terminal domain KS4_RS00900 PF05175 Methyltransferase small domain KS4_RS00925 PF08299 Bacterial dnaA protein helix-turn-helix KS4_RS00925 PF11638 DnaA N-terminal domain KS4_RS00925 PF00308 Bacterial dnaA protein KS4_RS00940 PF02779 Transketolase, pyrimidine binding domain KS4_RS00940 PF02780 Transketolase, C-terminal domain KS4_RS00940 PF00364 Biotin-requiring enzyme KS4_RS00945 PF00676 Dehydrogenase E1 component KS4_RS00960 PF01103 Surface antigen KS4_RS00960 PF07244 Surface antigen variable number repeat KS4_RS00960 PF17243 POTRA domain TamA domain 1 KS4_RS00970 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS00970 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KS4_RS00975 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KS4_RS00975 PF07977 FabA-like domain KS4_RS00980 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS00980 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KS4_RS00985 PF01370 NAD dependent epimerase/dehydratase family KS4_RS01020 PF00591 Glycosyl transferase family, a/b domain KS4_RS01020 PF02885 Glycosyl transferase family, helical bundle domain KS4_RS01030 PF01510 N-acetylmuramoyl-L-alanine amidase KS4_RS01040 PF01510 N-acetylmuramoyl-L-alanine amidase KS4_RS01045 PF03966 Trm112p-like protein KS4_RS01055 PF07729 FCD domain KS4_RS01055 PF00392 Bacterial regulatory proteins, gntR family KS4_RS01080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS01080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS01090 PF16257 tagaturonate epimerase KS4_RS01095 PF02614 Glucuronate isomerase KS4_RS01100 PF13291 ACT domain KS4_RS01100 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS01120 PF11867 Domain of unknown function (DUF3387) KS4_RS01120 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KS4_RS01120 PF18766 SWI2/SNF2 ATPase KS4_RS01180 PF13249 Squalene-hopene cyclase N-terminal domain KS4_RS01180 PF13243 Squalene-hopene cyclase C-terminal domain KS4_RS01185 PF00440 Bacterial regulatory proteins, tetR family KS4_RS01200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS01200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS01205 PF07840 FadR C-terminal domain KS4_RS01205 PF00392 Bacterial regulatory proteins, gntR family KS4_RS01210 PF13183 4Fe-4S dicluster domain KS4_RS01210 PF01565 FAD binding domain KS4_RS01210 PF02913 FAD linked oxidases, C-terminal domain KS4_RS01220 PF13302 Acetyltransferase (GNAT) domain KS4_RS01230 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS01260 PF01136 Peptidase family U32 KS4_RS01300 PF12951 Passenger-associated-transport-repeat KS4_RS01320 PF07664 Ferrous iron transport protein B C terminus KS4_RS01320 PF17910 FeoB cytosolic helical domain KS4_RS01320 PF02421 Ferrous iron transport protein B KS4_RS01320 PF07670 Nucleoside recognition KS4_RS01325 PF07664 Ferrous iron transport protein B C terminus KS4_RS01325 PF17910 FeoB cytosolic helical domain KS4_RS01325 PF02421 Ferrous iron transport protein B KS4_RS01325 PF07670 Nucleoside recognition KS4_RS01330 PF00403 Heavy-metal-associated domain KS4_RS01345 PF01050 Mannose-6-phosphate isomerase KS4_RS01345 PF00483 Nucleotidyl transferase KS4_RS01370 PF02146 Sir2 family KS4_RS01390 PF03652 Holliday junction resolvase KS4_RS01400 PF04452 RNA methyltransferase KS4_RS01415 PF01704 UTP--glucose-1-phosphate uridylyltransferase KS4_RS01435 PF05448 Acetyl xylan esterase (AXE1) KS4_RS01455 PF00885 6,7-dimethyl-8-ribityllumazine synthase KS4_RS01460 PF01029 NusB family KS4_RS01475 PF00365 Phosphofructokinase KS4_RS01490 PF00232 Glycosyl hydrolase family 1 KS4_RS01510 PF16363 GDP-mannose 4,6 dehydratase KS4_RS01515 PF01370 NAD dependent epimerase/dehydratase family KS4_RS01520 PF13579 Glycosyl transferase 4-like domain KS4_RS01520 PF00534 Glycosyl transferases group 1 KS4_RS01560 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS01570 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS01625 PF02449 Beta-galactosidase KS4_RS01625 PF08533 Beta-galactosidase C-terminal domain KS4_RS01625 PF08532 Beta-galactosidase trimerisation domain KS4_RS01630 PF00085 Thioredoxin KS4_RS01635 PF05193 Peptidase M16 inactive domain KS4_RS01635 PF00675 Insulinase (Peptidase family M16) KS4_RS01645 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KS4_RS01645 PF00925 GTP cyclohydrolase II KS4_RS01655 PF12419 SNF2 Helicase protein KS4_RS01655 PF00271 Helicase conserved C-terminal domain KS4_RS01655 PF00176 SNF2 family N-terminal domain KS4_RS01665 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KS4_RS01670 PF12833 Helix-turn-helix domain KS4_RS01695 PF08281 Sigma-70, region 4 KS4_RS01695 PF04542 Sigma-70 region 2 KS4_RS01700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS01700 PF16591 Helical bimodular sensor domain KS4_RS01700 PF00672 HAMP domain KS4_RS01705 PF01966 HD domain KS4_RS01710 PF00440 Bacterial regulatory proteins, tetR family KS4_RS01710 PF13305 Tetracyclin repressor-like, C-terminal domain KS4_RS01755 PF00080 Copper/zinc superoxide dismutase (SODC) KS4_RS01760 PF01008 Initiation factor 2 subunit family KS4_RS01765 PF04542 Sigma-70 region 2 KS4_RS01765 PF08281 Sigma-70, region 4 KS4_RS01775 PF00672 HAMP domain KS4_RS01775 PF17200 Single Cache domain 2 KS4_RS01775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS01780 PF06508 Queuosine biosynthesis protein QueC KS4_RS01790 PF02540 NAD synthase KS4_RS01790 PF00117 Glutamine amidotransferase class-I KS4_RS01790 PF00958 GMP synthase C terminal domain KS4_RS01805 PF00939 Sodium:sulfate symporter transmembrane region KS4_RS01820 PF13426 PAS domain KS4_RS01820 PF08447 PAS fold KS4_RS01820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS01830 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KS4_RS01830 PF14850 DNA-binding domain of Proline dehydrogenase KS4_RS01830 PF01619 Proline dehydrogenase KS4_RS01830 PF00171 Aldehyde dehydrogenase family KS4_RS01835 PF00171 Aldehyde dehydrogenase family KS4_RS01840 PF00083 Sugar (and other) transporter KS4_RS01845 PF01726 LexA DNA binding domain KS4_RS01845 PF00717 Peptidase S24-like KS4_RS01870 PF06230 LpxI C-terminal domain KS4_RS01870 PF17930 LpxI N-terminal domain KS4_RS01880 PF13439 Glycosyltransferase Family 4 KS4_RS01880 PF00534 Glycosyl transferases group 1 KS4_RS01895 PF08241 Methyltransferase domain KS4_RS01900 PF00588 SpoU rRNA Methylase family KS4_RS01900 PF08032 RNA 2'-O ribose methyltransferase substrate binding KS4_RS01910 PF09261 Alpha mannosidase middle domain KS4_RS01910 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain KS4_RS01910 PF01074 Glycosyl hydrolases family 38 N-terminal domain KS4_RS01910 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 KS4_RS01910 PF07748 Glycosyl hydrolases family 38 C-terminal domain KS4_RS01930 PF08402 TOBE domain KS4_RS01930 PF00005 ABC transporter KS4_RS01945 PF07726 ATPase family associated with various cellular activities (AAA) KS4_RS01945 PF17863 AAA lid domain KS4_RS01965 PF13460 NAD(P)H-binding KS4_RS01965 PF11066 Protein of unknown function (DUF2867) KS4_RS01970 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KS4_RS01970 PF01243 Pyridoxamine 5'-phosphate oxidase KS4_RS01975 PF02586 SOS response associated peptidase (SRAP) KS4_RS01980 PF00849 RNA pseudouridylate synthase KS4_RS01980 PF01479 S4 domain KS4_RS01985 PF00005 ABC transporter KS4_RS01985 PF12399 Branched-chain amino acid ATP-binding cassette transporter KS4_RS01995 PF13439 Glycosyltransferase Family 4 KS4_RS01995 PF00534 Glycosyl transferases group 1 KS4_RS02000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KS4_RS02000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KS4_RS02005 PF03979 Sigma-70 factor, region 1.1 KS4_RS02005 PF00140 Sigma-70 factor, region 1.2 KS4_RS02005 PF04539 Sigma-70 region 3 KS4_RS02005 PF04545 Sigma-70, region 4 KS4_RS02005 PF04542 Sigma-70 region 2 KS4_RS02010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KS4_RS02020 PF00248 Aldo/keto reductase family KS4_RS02025 PF02445 Quinolinate synthetase A protein KS4_RS02045 PF07670 Nucleoside recognition KS4_RS02065 PF00672 HAMP domain KS4_RS02065 PF02743 Cache domain KS4_RS02065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS02090 PF00117 Glutamine amidotransferase class-I KS4_RS02090 PF06418 CTP synthase N-terminus KS4_RS02100 PF02348 Cytidylyltransferase KS4_RS02110 PF01113 Dihydrodipicolinate reductase, N-terminus KS4_RS02110 PF05173 Dihydrodipicolinate reductase, C-terminus KS4_RS02115 PF00953 Glycosyl transferase family 4 KS4_RS02145 PF01016 Ribosomal L27 protein KS4_RS02150 PF01926 50S ribosome-binding GTPase KS4_RS02150 PF01018 GTP1/OBG KS4_RS02150 PF09269 Domain of unknown function (DUF1967) KS4_RS02160 PF04072 Leucine carboxyl methyltransferase KS4_RS02165 PF03309 Type III pantothenate kinase KS4_RS02190 PF10396 GTP-binding protein TrmE N-terminus KS4_RS02190 PF12631 MnmE helical domain KS4_RS02190 PF01926 50S ribosome-binding GTPase KS4_RS02195 PF12127 SigmaW regulon antibacterial KS4_RS02210 PF01546 Peptidase family M20/M25/M40 KS4_RS02210 PF07687 Peptidase dimerisation domain KS4_RS02225 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KS4_RS02225 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KS4_RS02240 PF13186 Iron-sulfur cluster-binding domain KS4_RS02240 PF04055 Radical SAM superfamily KS4_RS02245 PF05191 Adenylate kinase, active site lid KS4_RS02255 PF04362 Bacterial Fe(2+) trafficking KS4_RS02260 PF12705 PD-(D/E)XK nuclease superfamily KS4_RS02265 PF13361 UvrD-like helicase C-terminal domain KS4_RS02265 PF12705 PD-(D/E)XK nuclease superfamily KS4_RS02265 PF00580 UvrD/REP helicase N-terminal domain KS4_RS02275 PF12833 Helix-turn-helix domain KS4_RS02275 PF12852 Cupin KS4_RS02280 PF02056 Family 4 glycosyl hydrolase KS4_RS02280 PF11975 Family 4 glycosyl hydrolase C-terminal domain KS4_RS02290 PF01895 PhoU domain KS4_RS02295 PF01384 Phosphate transporter family KS4_RS02300 PF01865 Protein of unknown function DUF47 KS4_RS02310 PF16736 Single Cache-like KS4_RS02310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS02310 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS02310 PF00989 PAS fold KS4_RS02315 PF00486 Transcriptional regulatory protein, C terminal KS4_RS02315 PF00072 Response regulator receiver domain KS4_RS02355 PF02631 RecX family KS4_RS02375 PF01964 Radical SAM ThiC family KS4_RS02395 PF01596 O-methyltransferase KS4_RS02405 PF06794 Uncharacterised protein family (UPF0270) KS4_RS02415 PF08240 Alcohol dehydrogenase GroES-like domain KS4_RS02415 PF00107 Zinc-binding dehydrogenase KS4_RS02425 PF02811 PHP domain KS4_RS02445 PF00781 Diacylglycerol kinase catalytic domain KS4_RS02450 PF02754 Cysteine-rich domain KS4_RS02455 PF11870 Domain of unknown function (DUF3390) KS4_RS02455 PF13183 4Fe-4S dicluster domain KS4_RS02455 PF02589 LUD domain KS4_RS02475 PF04055 Radical SAM superfamily KS4_RS02475 PF02310 B12 binding domain KS4_RS02490 PF00083 Sugar (and other) transporter KS4_RS02500 PF01914 MarC family integral membrane protein KS4_RS02505 PF04565 RNA polymerase Rpb2, domain 3 KS4_RS02505 PF04560 RNA polymerase Rpb2, domain 7 KS4_RS02505 PF04561 RNA polymerase Rpb2, domain 2 KS4_RS02505 PF00562 RNA polymerase Rpb2, domain 6 KS4_RS02505 PF04563 RNA polymerase beta subunit KS4_RS02505 PF10385 RNA polymerase beta subunit external 1 domain KS4_RS02510 PF04997 RNA polymerase Rpb1, domain 1 KS4_RS02510 PF04983 RNA polymerase Rpb1, domain 3 KS4_RS02510 PF00623 RNA polymerase Rpb1, domain 2 KS4_RS02510 PF04998 RNA polymerase Rpb1, domain 5 KS4_RS02510 PF05000 RNA polymerase Rpb1, domain 4 KS4_RS02520 PF00440 Bacterial regulatory proteins, tetR family KS4_RS02520 PF18665 Tetracyclin repressor-like, C-terminal domain KS4_RS02535 PF02622 Uncharacterized ACR, COG1678 KS4_RS02560 PF07977 FabA-like domain KS4_RS02565 PF00550 Phosphopantetheine attachment site KS4_RS02570 PF07977 FabA-like domain KS4_RS02575 PF00288 GHMP kinases N terminal domain KS4_RS02575 PF08544 GHMP kinases C terminal KS4_RS02575 PF10509 Galactokinase galactose-binding signature KS4_RS02580 PF01063 Amino-transferase class IV KS4_RS02605 PF00989 PAS fold KS4_RS02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS02605 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS02610 PF00313 'Cold-shock' DNA-binding domain KS4_RS02615 PF01138 3' exoribonuclease family, domain 1 KS4_RS02615 PF00013 KH domain KS4_RS02615 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KS4_RS02615 PF03725 3' exoribonuclease family, domain 2 KS4_RS02615 PF00575 S1 RNA binding domain KS4_RS02620 PF00312 Ribosomal protein S15 KS4_RS02640 PF04143 Sulphur transport KS4_RS02645 PF01022 Bacterial regulatory protein, arsR family KS4_RS02650 PF00271 Helicase conserved C-terminal domain KS4_RS02650 PF00270 DEAD/DEAH box helicase KS4_RS02655 PF01055 Glycosyl hydrolases family 31 KS4_RS02655 PF17137 Domain of unknown function (DUF5110) KS4_RS02655 PF16338 Domain of unknown function (DUF4968) KS4_RS02655 PF13802 Galactose mutarotase-like KS4_RS02660 PF00202 Aminotransferase class-III KS4_RS02665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KS4_RS02665 PF01842 ACT domain KS4_RS02665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS4_RS02670 PF00753 Metallo-beta-lactamase superfamily KS4_RS02680 PF07859 alpha/beta hydrolase fold KS4_RS02705 PF01565 FAD binding domain KS4_RS02705 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KS4_RS02710 PF01654 Cytochrome bd terminal oxidase subunit I KS4_RS02715 PF02322 Cytochrome bd terminal oxidase subunit II KS4_RS02725 PF01165 Ribosomal protein S21 KS4_RS02735 PF03030 Inorganic H+ pyrophosphatase KS4_RS02765 PF00701 Dihydrodipicolinate synthetase family KS4_RS02775 PF01969 Protein of unknown function DUF111 KS4_RS02780 PF11734 TilS substrate C-terminal domain KS4_RS02780 PF01171 PP-loop family KS4_RS02785 PF01872 RibD C-terminal domain KS4_RS02800 PF02768 DNA polymerase III beta subunit, C-terminal domain KS4_RS02800 PF02767 DNA polymerase III beta subunit, central domain KS4_RS02800 PF00712 DNA polymerase III beta subunit, N-terminal domain KS4_RS02815 PF01632 Ribosomal protein L35 KS4_RS02820 PF00453 Ribosomal protein L20 KS4_RS02830 PF02646 RmuC family KS4_RS02835 PF13439 Glycosyltransferase Family 4 KS4_RS02835 PF00534 Glycosyl transferases group 1 KS4_RS02845 PF00202 Aminotransferase class-III KS4_RS02850 PF03601 Conserved hypothetical protein 698 KS4_RS02855 PF03466 LysR substrate binding domain KS4_RS02855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS4_RS02860 PF00467 KOW motif KS4_RS02860 PF02357 Transcription termination factor nusG KS4_RS02890 PF00471 Ribosomal protein L33 KS4_RS02895 PF03144 Elongation factor Tu domain 2 KS4_RS02895 PF00009 Elongation factor Tu GTP binding domain KS4_RS02895 PF03143 Elongation factor Tu C-terminal domain KS4_RS02905 PF01106 NifU-like domain KS4_RS02905 PF01521 Iron-sulphur cluster biosynthesis KS4_RS02910 PF02599 Global regulator protein family KS4_RS02915 PF07690 Major Facilitator Superfamily KS4_RS02920 PF01925 Sulfite exporter TauE/SafE KS4_RS02935 PF01048 Phosphorylase superfamily KS4_RS02955 PF03976 Polyphosphate kinase 2 (PPK2) KS4_RS02960 PF01641 SelR domain KS4_RS02970 PF08281 Sigma-70, region 4 KS4_RS02970 PF04542 Sigma-70 region 2 KS4_RS02990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KS4_RS02990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS4_RS02990 PF00205 Thiamine pyrophosphate enzyme, central domain KS4_RS03000 PF07995 Glucose / Sorbosone dehydrogenase KS4_RS03010 PF02272 DHHA1 domain KS4_RS03010 PF17768 RecJ OB domain KS4_RS03010 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KS4_RS03010 PF01368 DHH family KS4_RS03015 PF08334 Type II secretion system (T2SS), protein G KS4_RS03015 PF07963 Prokaryotic N-terminal methylation motif KS4_RS03020 PF08486 Stage II sporulation protein KS4_RS03035 PF12704 MacB-like periplasmic core domain KS4_RS03035 PF02687 FtsX-like permease family KS4_RS03050 PF02615 Malate/L-lactate dehydrogenase KS4_RS03070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS03070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS03075 PF02311 AraC-like ligand binding domain KS4_RS03075 PF12833 Helix-turn-helix domain KS4_RS03080 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KS4_RS03080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KS4_RS03085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KS4_RS03085 PF01842 ACT domain KS4_RS03085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS4_RS03090 PF00005 ABC transporter KS4_RS03095 PF02687 FtsX-like permease family KS4_RS03100 PF01336 OB-fold nucleic acid binding domain KS4_RS03100 PF00152 tRNA synthetases class II (D, K and N) KS4_RS03105 PF01245 Ribosomal protein L19 KS4_RS03120 PF01746 tRNA (Guanine-1)-methyltransferase KS4_RS03130 PF00886 Ribosomal protein S16 KS4_RS03140 PF00005 ABC transporter KS4_RS03140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS4_RS03150 PF13180 PDZ domain KS4_RS03155 PF02548 Ketopantoate hydroxymethyltransferase KS4_RS03165 PF00664 ABC transporter transmembrane region KS4_RS03165 PF00005 ABC transporter KS4_RS03170 PF00664 ABC transporter transmembrane region KS4_RS03170 PF00005 ABC transporter KS4_RS03180 PF03641 Possible lysine decarboxylase KS4_RS03200 PF07944 Beta-L-arabinofuranosidase, GH127 KS4_RS03205 PF00266 Aminotransferase class-V KS4_RS03230 PF00873 AcrB/AcrD/AcrF family KS4_RS03235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KS4_RS03240 PF14437 MafB19-like deaminase KS4_RS03250 PF01791 DeoC/LacD family aldolase KS4_RS03255 PF01791 DeoC/LacD family aldolase KS4_RS03260 PF00793 DAHP synthetase I family KS4_RS03275 PF07726 ATPase family associated with various cellular activities (AAA) KS4_RS03275 PF17863 AAA lid domain KS4_RS03290 PF01475 Ferric uptake regulator family KS4_RS03295 PF02769 AIR synthase related protein, C-terminal domain KS4_RS03295 PF00586 AIR synthase related protein, N-terminal domain KS4_RS03300 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS03310 PF00574 Clp protease KS4_RS03315 PF00893 Small Multidrug Resistance protein KS4_RS03320 PF17676 LD-carboxypeptidase C-terminal domain KS4_RS03320 PF02016 LD-carboxypeptidase N-terminal domain KS4_RS03325 PF01098 Cell cycle protein KS4_RS03330 PF03033 Glycosyltransferase family 28 N-terminal domain KS4_RS03330 PF04101 Glycosyltransferase family 28 C-terminal domain KS4_RS03340 PF00348 Polyprenyl synthetase KS4_RS03345 PF02780 Transketolase, C-terminal domain KS4_RS03345 PF02779 Transketolase, pyrimidine binding domain KS4_RS03345 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KS4_RS03365 PF00403 Heavy-metal-associated domain KS4_RS03390 PF00731 AIR carboxylase KS4_RS03400 PF00005 ABC transporter KS4_RS03415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS4_RS03415 PF00460 Flagella basal body rod protein KS4_RS03420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS4_RS03420 PF00460 Flagella basal body rod protein KS4_RS03430 PF02107 Flagellar L-ring protein KS4_RS03435 PF02119 Flagellar P-ring protein KS4_RS03450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS4_RS03450 PF00460 Flagella basal body rod protein KS4_RS03460 PF02623 FliW protein KS4_RS03465 PF02599 Global regulator protein family KS4_RS03470 PF00700 Bacterial flagellin C-terminal helical region KS4_RS03470 PF07196 Flagellin hook IN motif KS4_RS03470 PF00669 Bacterial flagellin N-terminal helical region KS4_RS03475 PF00117 Glutamine amidotransferase class-I KS4_RS03480 PF08548 Peptidase M10 serralysin C terminal KS4_RS03480 PF12708 Pectate lyase superfamily protein KS4_RS03480 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) KS4_RS03515 PF00484 Carbonic anhydrase KS4_RS03520 PF08264 Anticodon-binding domain of tRNA KS4_RS03520 PF09334 tRNA synthetases class I (M) KS4_RS03520 PF13603 Leucyl-tRNA synthetase, Domain 2 KS4_RS03535 PF00364 Biotin-requiring enzyme KS4_RS03535 PF02436 Conserved carboxylase domain KS4_RS03535 PF00682 HMGL-like KS4_RS03540 PF12951 Passenger-associated-transport-repeat KS4_RS03585 PF03796 DnaB-like helicase C terminal domain KS4_RS03585 PF00772 DnaB-like helicase N terminal domain KS4_RS03605 PF04055 Radical SAM superfamily KS4_RS03605 PF13186 Iron-sulfur cluster-binding domain KS4_RS03610 PF13186 Iron-sulfur cluster-binding domain KS4_RS03610 PF04055 Radical SAM superfamily KS4_RS03615 PF00459 Inositol monophosphatase family KS4_RS03625 PF01757 Acyltransferase family KS4_RS03635 PF12697 Alpha/beta hydrolase family KS4_RS03650 PF02616 Segregation and condensation protein ScpA KS4_RS03655 PF01380 SIS domain KS4_RS03655 PF00571 CBS domain KS4_RS03695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KS4_RS03695 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KS4_RS03695 PF02142 MGS-like domain KS4_RS03700 PF12833 Helix-turn-helix domain KS4_RS03705 PF00578 AhpC/TSA family KS4_RS03710 PF02627 Carboxymuconolactone decarboxylase family KS4_RS03730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS03730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS03740 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KS4_RS03755 PF01810 LysE type translocator KS4_RS03765 PF00106 short chain dehydrogenase KS4_RS03770 PF00248 Aldo/keto reductase family KS4_RS03775 PF03764 Elongation factor G, domain IV KS4_RS03775 PF14492 Elongation Factor G, domain II KS4_RS03775 PF03144 Elongation factor Tu domain 2 KS4_RS03775 PF00009 Elongation factor Tu GTP binding domain KS4_RS03775 PF00679 Elongation factor G C-terminus KS4_RS03835 PF08676 MutL C terminal dimerisation domain KS4_RS03835 PF01119 DNA mismatch repair protein, C-terminal domain KS4_RS03855 PF00398 Ribosomal RNA adenine dimethylase KS4_RS03860 PF00535 Glycosyl transferase family 2 KS4_RS03875 PF00731 AIR carboxylase KS4_RS03880 PF03853 YjeF-related protein N-terminus KS4_RS03880 PF01256 Carbohydrate kinase KS4_RS03890 PF13280 WYL domain KS4_RS03890 PF08279 HTH domain KS4_RS03900 PF00186 Dihydrofolate reductase KS4_RS03905 PF16697 Inner membrane component of T3SS, cytoplasmic domain KS4_RS03920 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KS4_RS03925 PF00303 Thymidylate synthase KS4_RS03950 PF00551 Formyl transferase KS4_RS03950 PF01842 ACT domain KS4_RS03955 PF04539 Sigma-70 region 3 KS4_RS03955 PF04545 Sigma-70, region 4 KS4_RS03955 PF04542 Sigma-70 region 2 KS4_RS03960 PF01895 PhoU domain KS4_RS03965 PF00005 ABC transporter KS4_RS03970 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS03975 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS03980 PF12849 PBP superfamily domain KS4_RS04010 PF16326 ABC transporter C-terminal domain KS4_RS04010 PF12848 ABC transporter KS4_RS04010 PF00005 ABC transporter KS4_RS04020 PF00501 AMP-binding enzyme KS4_RS04020 PF13193 AMP-binding enzyme C-terminal domain KS4_RS04020 PF16177 Acetyl-coenzyme A synthetase N-terminus KS4_RS04025 PF00484 Carbonic anhydrase KS4_RS04035 PF00696 Amino acid kinase family KS4_RS04040 PF01765 Ribosome recycling factor KS4_RS04050 PF04055 Radical SAM superfamily KS4_RS04065 PF02073 Thermophilic metalloprotease (M29) KS4_RS04085 PF00842 Alanine racemase, C-terminal domain KS4_RS04085 PF01168 Alanine racemase, N-terminal domain KS4_RS04090 PF00271 Helicase conserved C-terminal domain KS4_RS04090 PF00270 DEAD/DEAH box helicase KS4_RS04095 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS04095 PF17158 Membrane-associated sensor, integral membrane domain KS4_RS04105 PF00231 ATP synthase KS4_RS04120 PF00119 ATP synthase A chain KS4_RS04125 PF00137 ATP synthase subunit C KS4_RS04130 PF00430 ATP synthase B/B' CF(0) KS4_RS04135 PF00213 ATP synthase delta (OSCP) subunit KS4_RS04140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS4_RS04140 PF00306 ATP synthase alpha/beta chain, C terminal domain KS4_RS04140 PF02874 ATP synthase alpha/beta family, beta-barrel domain KS4_RS04150 PF00285 Citrate synthase, C-terminal domain KS4_RS04155 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS04165 PF16355 Domain of unknown function (DUF4982) KS4_RS04165 PF00703 Glycosyl hydrolases family 2 KS4_RS04165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KS4_RS04165 PF02837 Glycosyl hydrolases family 2, sugar binding domain KS4_RS04165 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 KS4_RS04180 PF03102 NeuB family KS4_RS04180 PF08666 SAF domain KS4_RS04195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS04195 PF00672 HAMP domain KS4_RS04195 PF02743 Cache domain KS4_RS04205 PF01434 Peptidase family M41 KS4_RS04205 PF00004 ATPase family associated with various cellular activities (AAA) KS4_RS04205 PF17862 AAA+ lid domain KS4_RS04230 PF02705 K+ potassium transporter KS4_RS04235 PF18357 Diphteria toxin repressor SH3 domain KS4_RS04235 PF01325 Iron dependent repressor, N-terminal DNA binding domain KS4_RS04235 PF02742 Iron dependent repressor, metal binding and dimerisation domain KS4_RS04240 PF00293 NUDIX domain KS4_RS04245 PF00857 Isochorismatase family KS4_RS04250 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KS4_RS04250 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KS4_RS04250 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KS4_RS04285 PF02416 mttA/Hcf106 family KS4_RS04290 PF02801 Beta-ketoacyl synthase, C-terminal domain KS4_RS04290 PF00109 Beta-ketoacyl synthase, N-terminal domain KS4_RS04295 PF00550 Phosphopantetheine attachment site KS4_RS04330 PF00698 Acyl transferase domain KS4_RS04360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KS4_RS04360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KS4_RS04365 PF02504 Fatty acid synthesis protein KS4_RS04370 PF01783 Ribosomal L32p protein family KS4_RS04375 PF00474 Sodium:solute symporter family KS4_RS04395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS04395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS04405 PF01618 MotA/TolQ/ExbB proton channel family KS4_RS04430 PF00381 PTS HPr component phosphorylation site KS4_RS04455 PF01479 S4 domain KS4_RS04455 PF00579 tRNA synthetases class I (W and Y) KS4_RS04465 PF01207 Dihydrouridine synthase (Dus) KS4_RS04470 PF00480 ROK family KS4_RS04470 PF01047 MarR family KS4_RS04475 PF02875 Mur ligase family, glutamate ligase domain KS4_RS04475 PF08245 Mur ligase middle domain KS4_RS04485 PF02403 Seryl-tRNA synthetase N-terminal domain KS4_RS04485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS4_RS04505 PF00694 Aconitase C-terminal domain KS4_RS04520 PF01258 Prokaryotic dksA/traR C4-type zinc finger KS4_RS04525 PF01252 Signal peptidase (SPase) II KS4_RS04535 PF14821 Threonine synthase N terminus KS4_RS04535 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS04555 PF01053 Cys/Met metabolism PLP-dependent enzyme KS4_RS04560 PF07021 Methionine biosynthesis protein MetW KS4_RS04560 PF00561 alpha/beta hydrolase fold KS4_RS04570 PF01649 Ribosomal protein S20 KS4_RS04580 PF08529 NusA N-terminal domain KS4_RS04580 PF13184 NusA-like KH domain KS4_RS04580 PF00575 S1 RNA binding domain KS4_RS04585 PF04760 Translation initiation factor IF-2, N-terminal region KS4_RS04585 PF00009 Elongation factor Tu GTP binding domain KS4_RS04585 PF11987 Translation-initiation factor 2 KS4_RS04590 PF04456 Protein of unknown function (DUF503) KS4_RS04595 PF02033 Ribosome-binding factor A KS4_RS04605 PF01634 ATP phosphoribosyltransferase KS4_RS04605 PF08029 HisG, C-terminal domain KS4_RS04615 PF01751 Toprim domain KS4_RS04615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS04615 PF00986 DNA gyrase B subunit, carboxyl terminus KS4_RS04615 PF00204 DNA gyrase B KS4_RS04620 PF00958 GMP synthase C terminal domain KS4_RS04620 PF00117 Glutamine amidotransferase class-I KS4_RS04620 PF03352 Methyladenine glycosylase KS4_RS04620 PF13302 Acetyltransferase (GNAT) domain KS4_RS04620 PF13673 Acetyltransferase (GNAT) domain KS4_RS04630 PF00380 Ribosomal protein S9/S16 KS4_RS04635 PF00572 Ribosomal protein L13 KS4_RS04645 PF00005 ABC transporter KS4_RS04655 PF01661 Macro domain KS4_RS04670 PF00588 SpoU rRNA Methylase family KS4_RS04685 PF01758 Sodium Bile acid symporter family KS4_RS04695 PF03461 TRCF domain KS4_RS04695 PF00270 DEAD/DEAH box helicase KS4_RS04695 PF00271 Helicase conserved C-terminal domain KS4_RS04695 PF17757 UvrB interaction domain KS4_RS04695 PF02559 CarD-like/TRCF domain KS4_RS04700 PF00583 Acetyltransferase (GNAT) family KS4_RS04700 PF14698 Argininosuccinate lyase C-terminal KS4_RS04700 PF00206 Lyase KS4_RS04705 PF03706 Lysylphosphatidylglycerol synthase TM region KS4_RS04710 PF12826 Helix-hairpin-helix motif KS4_RS04710 PF00533 BRCA1 C Terminus (BRCT) domain KS4_RS04710 PF03120 NAD-dependent DNA ligase OB-fold domain KS4_RS04710 PF01653 NAD-dependent DNA ligase adenylation domain KS4_RS04710 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KS4_RS04745 PF02151 UvrB/uvrC motif KS4_RS04745 PF01541 GIY-YIG catalytic domain KS4_RS04745 PF08459 UvrC Helix-hairpin-helix N-terminal KS4_RS04760 PF02594 Uncharacterised ACR, YggU family COG1872 KS4_RS04765 PF00850 Histone deacetylase domain KS4_RS04780 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS04785 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS04795 PF13419 Haloacid dehalogenase-like hydrolase KS4_RS04800 PF01613 Flavin reductase like domain KS4_RS04800 PF00258 Flavodoxin KS4_RS04815 PF02585 GlcNAc-PI de-N-acetylase KS4_RS04820 PF13439 Glycosyltransferase Family 4 KS4_RS04820 PF00534 Glycosyl transferases group 1 KS4_RS04825 PF01416 tRNA pseudouridine synthase KS4_RS04835 PF01039 Carboxyl transferase domain KS4_RS04835 PF17848 Acetyl-coA carboxylase zinc finger domain KS4_RS04840 PF01557 Fumarylacetoacetate (FAA) hydrolase family KS4_RS04850 PF00294 pfkB family carbohydrate kinase KS4_RS04855 PF00334 Nucleoside diphosphate kinase KS4_RS04885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KS4_RS04890 PF00873 AcrB/AcrD/AcrF family KS4_RS04900 PF00535 Glycosyl transferase family 2 KS4_RS04905 PF02219 Methylenetetrahydrofolate reductase KS4_RS04925 PF03193 RsgA GTPase KS4_RS04930 PF04468 PSP1 C-terminal conserved region KS4_RS04960 PF00012 Hsp70 protein KS4_RS04965 PF00571 CBS domain KS4_RS04965 PF03448 MgtE intracellular N domain KS4_RS04965 PF01769 Divalent cation transporter KS4_RS04970 PF00294 pfkB family carbohydrate kinase KS4_RS04975 PF06134 L-rhamnose isomerase (RhaA) KS4_RS04980 PF12833 Helix-turn-helix domain KS4_RS05015 PF03852 DNA mismatch endonuclease Vsr KS4_RS05020 PF00145 C-5 cytosine-specific DNA methylase KS4_RS05070 PF00271 Helicase conserved C-terminal domain KS4_RS05070 PF04851 Type III restriction enzyme, res subunit KS4_RS05080 PF02195 ParB-like nuclease domain KS4_RS05210 PF00271 Helicase conserved C-terminal domain KS4_RS05210 PF00176 SNF2 family N-terminal domain KS4_RS05215 PF18273 Type III R-M EcoP15I C-terminal domain KS4_RS05215 PF01555 DNA methylase KS4_RS05220 PF04851 Type III restriction enzyme, res subunit KS4_RS05220 PF08774 VRR-NUC domain KS4_RS05230 PF08281 Sigma-70, region 4 KS4_RS05230 PF04542 Sigma-70 region 2 KS4_RS05245 PF00873 AcrB/AcrD/AcrF family KS4_RS05275 PF00849 RNA pseudouridylate synthase KS4_RS05275 PF01479 S4 domain KS4_RS05290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS05290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS05310 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KS4_RS05325 PF10263 SprT-like family KS4_RS05345 PF01979 Amidohydrolase family KS4_RS05350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KS4_RS05350 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KS4_RS05365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KS4_RS05365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KS4_RS05365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KS4_RS05370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KS4_RS05370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KS4_RS05380 PF10431 C-terminal, D2-small domain, of ClpB protein KS4_RS05380 PF02861 Clp amino terminal domain, pathogenicity island component KS4_RS05380 PF17871 AAA lid domain KS4_RS05380 PF07724 AAA domain (Cdc48 subfamily) KS4_RS05380 PF00004 ATPase family associated with various cellular activities (AAA) KS4_RS05385 PF00749 tRNA synthetases class I (E and Q), catalytic domain KS4_RS05400 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS05400 PF07694 5TMR of 5TMR-LYT KS4_RS05405 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS05405 PF07694 5TMR of 5TMR-LYT KS4_RS05415 PF02774 Semialdehyde dehydrogenase, dimerisation domain KS4_RS05415 PF01118 Semialdehyde dehydrogenase, NAD binding domain KS4_RS05430 PF00464 Serine hydroxymethyltransferase KS4_RS05445 PF00994 Probable molybdopterin binding domain KS4_RS05445 PF02464 Competence-damaged protein KS4_RS05445 PF18146 Damage-inducible protein CinA KH domain KS4_RS05450 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KS4_RS05450 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KS4_RS05470 PF10996 Beta-Casp domain KS4_RS05470 PF00753 Metallo-beta-lactamase superfamily KS4_RS05470 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KS4_RS05480 PF02401 LytB protein KS4_RS05485 PF04542 Sigma-70 region 2 KS4_RS05485 PF00140 Sigma-70 factor, region 1.2 KS4_RS05485 PF03979 Sigma-70 factor, region 1.1 KS4_RS05485 PF04545 Sigma-70, region 4 KS4_RS05485 PF04539 Sigma-70 region 3 KS4_RS05490 PF00795 Carbon-nitrogen hydrolase KS4_RS05495 PF08669 Glycine cleavage T-protein C-terminal barrel domain KS4_RS05495 PF01571 Aminomethyltransferase folate-binding domain KS4_RS05500 PF00258 Flavodoxin KS4_RS05515 PF00144 Beta-lactamase KS4_RS05525 PF03717 Penicillin-binding Protein dimerisation domain KS4_RS05525 PF00905 Penicillin binding protein transpeptidase domain KS4_RS05540 PF01795 MraW methylase family KS4_RS05545 PF00227 Proteasome subunit KS4_RS05555 PF08240 Alcohol dehydrogenase GroES-like domain KS4_RS05555 PF00107 Zinc-binding dehydrogenase KS4_RS05575 PF07743 HSCB C-terminal oligomerisation domain KS4_RS05590 PF16198 tRNA pseudouridylate synthase B C-terminal domain KS4_RS05590 PF01509 TruB family pseudouridylate synthase (N terminal domain) KS4_RS05590 PF09142 tRNA Pseudouridine synthase II, C terminal KS4_RS05600 PF00902 Sec-independent protein translocase protein (TatC) KS4_RS05605 PF02547 Queuosine biosynthesis protein KS4_RS05615 PF00565 Staphylococcal nuclease homologue KS4_RS05630 PF01594 AI-2E family transporter KS4_RS05645 PF02592 Putative vitamin uptake transporter KS4_RS05650 PF00155 Aminotransferase class I and II KS4_RS05670 PF03462 PCRF domain KS4_RS05670 PF00472 RF-1 domain KS4_RS05690 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS05695 PF00158 Sigma-54 interaction domain KS4_RS05695 PF02954 Bacterial regulatory protein, Fis family KS4_RS05695 PF00072 Response regulator receiver domain KS4_RS05700 PF00460 Flagella basal body rod protein KS4_RS05705 PF00460 Flagella basal body rod protein KS4_RS05705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS4_RS05710 PF02049 Flagellar hook-basal body complex protein FliE KS4_RS05720 PF01706 FliG C-terminal domain KS4_RS05720 PF14841 FliG middle domain KS4_RS05720 PF14842 FliG N-terminal domain KS4_RS05725 PF02108 Flagellar assembly protein FliH KS4_RS05730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS4_RS05730 PF18269 T3SS EscN ATPase C-terminal domain KS4_RS05730 PF02874 ATP synthase alpha/beta family, beta-barrel domain KS4_RS05760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS4_RS05760 PF00460 Flagella basal body rod protein KS4_RS05760 PF07559 Flagellar basal body protein FlaE KS4_RS05770 PF01618 MotA/TolQ/ExbB proton channel family KS4_RS05775 PF00691 OmpA family KS4_RS05775 PF13677 Membrane MotB of proton-channel complex MotA/MotB KS4_RS05785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KS4_RS05795 PF00813 FliP family KS4_RS05800 PF01313 Bacterial export proteins, family 3 KS4_RS05805 PF01311 Bacterial export proteins, family 1 KS4_RS05810 PF01312 FlhB HrpN YscU SpaS Family KS4_RS05815 PF00771 FHIPEP family KS4_RS05825 PF00448 SRP54-type protein, GTPase domain KS4_RS05830 PF10609 NUBPL iron-transfer P-loop NTPase KS4_RS05840 PF04545 Sigma-70, region 4 KS4_RS05840 PF04539 Sigma-70 region 3 KS4_RS05840 PF04542 Sigma-70 region 2 KS4_RS05850 PF00750 tRNA synthetases class I (R) KS4_RS05850 PF05746 DALR anticodon binding domain KS4_RS05850 PF03485 Arginyl tRNA synthetase N terminal domain KS4_RS05870 PF07676 WD40-like Beta Propeller Repeat KS4_RS05870 PF04052 TolB amino-terminal domain KS4_RS05885 PF02899 Phage integrase, N-terminal SAM-like domain KS4_RS05885 PF00589 Phage integrase family KS4_RS05890 PF17954 Quercetinase C-terminal cupin domain KS4_RS05890 PF02678 Pirin KS4_RS05920 PF00795 Carbon-nitrogen hydrolase KS4_RS05930 PF16450 Proteasomal ATPase OB C-terminal domain KS4_RS05930 PF17758 Proteasomal ATPase OB N-terminal domain KS4_RS05930 PF00004 ATPase family associated with various cellular activities (AAA) KS4_RS05960 PF00209 Sodium:neurotransmitter symporter family KS4_RS05970 PF16363 GDP-mannose 4,6 dehydratase KS4_RS05995 PF01597 Glycine cleavage H-protein KS4_RS06005 PF00578 AhpC/TSA family KS4_RS06010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KS4_RS06010 PF03714 Bacterial pullanase-associated domain KS4_RS06010 PF00128 Alpha amylase, catalytic domain KS4_RS06020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KS4_RS06020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KS4_RS06025 PF00356 Bacterial regulatory proteins, lacI family KS4_RS06045 PF16338 Domain of unknown function (DUF4968) KS4_RS06045 PF17137 Domain of unknown function (DUF5110) KS4_RS06045 PF13802 Galactose mutarotase-like KS4_RS06045 PF01055 Glycosyl hydrolases family 31 KS4_RS06050 PF11762 L-arabinose isomerase C-terminal domain KS4_RS06050 PF02610 L-arabinose isomerase KS4_RS06055 PF00596 Class II Aldolase and Adducin N-terminal domain KS4_RS06060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS4_RS06060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS4_RS06065 PF12833 Helix-turn-helix domain KS4_RS06075 PF01967 MoaC family KS4_RS06085 PF00107 Zinc-binding dehydrogenase KS4_RS06085 PF08240 Alcohol dehydrogenase GroES-like domain KS4_RS06090 PF00069 Protein kinase domain KS4_RS06090 PF03793 PASTA domain KS4_RS06110 PF00437 Type II/IV secretion system protein KS4_RS06125 PF03135 CagE, TrbE, VirB family, component of type IV transporter system KS4_RS06155 PF03743 Bacterial conjugation TrbI-like protein KS4_RS06165 PF01184 GPR1/FUN34/yaaH family KS4_RS06175 PF16363 GDP-mannose 4,6 dehydratase KS4_RS06180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS4_RS06180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS4_RS06245 PF00118 TCP-1/cpn60 chaperonin family KS4_RS06250 PF00166 Chaperonin 10 Kd subunit KS4_RS06255 PF00118 TCP-1/cpn60 chaperonin family KS4_RS06260 PF00684 DnaJ central domain KS4_RS06260 PF01556 DnaJ C terminal domain KS4_RS06260 PF00226 DnaJ domain KS4_RS06265 PF01025 GrpE KS4_RS06280 PF00561 alpha/beta hydrolase fold KS4_RS06285 PF13673 Acetyltransferase (GNAT) domain KS4_RS06285 PF04229 GrpB protein KS4_RS06290 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KS4_RS06290 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KS4_RS06290 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KS4_RS06290 PF10371 Domain of unknown function KS4_RS06290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS4_RS06295 PF01593 Flavin containing amine oxidoreductase KS4_RS06300 PF13580 SIS domain KS4_RS06310 PF00704 Glycosyl hydrolases family 18 KS4_RS06310 PF00041 Fibronectin type III domain KS4_RS06325 PF01043 SecA preprotein cross-linking domain KS4_RS06325 PF07517 SecA DEAD-like domain KS4_RS06335 PF07702 UTRA domain KS4_RS06335 PF00392 Bacterial regulatory proteins, gntR family KS4_RS06360 PF03167 Uracil DNA glycosylase superfamily KS4_RS06370 PF03109 ABC1 family KS4_RS06380 PF02561 Flagellar protein FliS KS4_RS06385 PF00579 tRNA synthetases class I (W and Y) KS4_RS06395 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KS4_RS06400 PF00580 UvrD/REP helicase N-terminal domain KS4_RS06400 PF13361 UvrD-like helicase C-terminal domain KS4_RS06415 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS06425 PF00535 Glycosyl transferase family 2 KS4_RS06440 PF00696 Amino acid kinase family KS4_RS06445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KS4_RS06445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KS4_RS06455 PF01451 Low molecular weight phosphotyrosine protein phosphatase KS4_RS06460 PF02502 Ribose/Galactose Isomerase KS4_RS06475 PF01032 FecCD transport family KS4_RS06490 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KS4_RS06515 PF01808 AICARFT/IMPCHase bienzyme KS4_RS06515 PF02142 MGS-like domain KS4_RS06530 PF00704 Glycosyl hydrolases family 18 KS4_RS06530 PF00041 Fibronectin type III domain KS4_RS06535 PF00923 Transaldolase/Fructose-6-phosphate aldolase KS4_RS06545 PF00069 Protein kinase domain KS4_RS06545 PF03793 PASTA domain KS4_RS06550 PF00348 Polyprenyl synthetase KS4_RS06560 PF00072 Response regulator receiver domain KS4_RS06565 PF01189 16S rRNA methyltransferase RsmB/F KS4_RS06565 PF01029 NusB family KS4_RS06570 PF02577 Bifunctional nuclease KS4_RS06575 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KS4_RS06595 PF01196 Ribosomal protein L17 KS4_RS06600 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KS4_RS06600 PF01000 RNA polymerase Rpb3/RpoA insert domain KS4_RS06600 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KS4_RS06605 PF00411 Ribosomal protein S11 KS4_RS06610 PF00416 Ribosomal protein S13/S18 KS4_RS06615 PF00444 Ribosomal protein L36 KS4_RS06620 PF01176 Translation initiation factor 1A / IF-1 KS4_RS06625 PF00557 Metallopeptidase family M24 KS4_RS06630 PF00344 SecY translocase KS4_RS06635 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KS4_RS06640 PF00333 Ribosomal protein S5, N-terminal domain KS4_RS06640 PF03719 Ribosomal protein S5, C-terminal domain KS4_RS06645 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KS4_RS06650 PF00347 Ribosomal protein L6 KS4_RS06655 PF00410 Ribosomal protein S8 KS4_RS06660 PF00253 Ribosomal protein S14p/S29e KS4_RS06665 PF00281 Ribosomal protein L5 KS4_RS06665 PF00673 ribosomal L5P family C-terminus KS4_RS06670 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KS4_RS06670 PF00467 KOW motif KS4_RS06675 PF00238 Ribosomal protein L14p/L23e KS4_RS06680 PF00366 Ribosomal protein S17 KS4_RS06685 PF00831 Ribosomal L29 protein KS4_RS06690 PF00252 Ribosomal protein L16p/L10e KS4_RS06695 PF00189 Ribosomal protein S3, C-terminal domain KS4_RS06695 PF07650 KH domain KS4_RS06700 PF00237 Ribosomal protein L22p/L17e KS4_RS06705 PF00203 Ribosomal protein S19 KS4_RS06710 PF03947 Ribosomal Proteins L2, C-terminal domain KS4_RS06710 PF00181 Ribosomal Proteins L2, RNA binding domain KS4_RS06715 PF00276 Ribosomal protein L23 KS4_RS06720 PF00573 Ribosomal protein L4/L1 family KS4_RS06725 PF00297 Ribosomal protein L3 KS4_RS06730 PF00338 Ribosomal protein S10p/S20e KS4_RS06735 PF00282 Pyridoxal-dependent decarboxylase conserved domain KS4_RS06740 PF13407 Periplasmic binding protein domain KS4_RS06745 PF00005 ABC transporter KS4_RS06750 PF02653 Branched-chain amino acid transport system / permease component KS4_RS06755 PF16353 Domain of unknown function(DUF4981) KS4_RS06755 PF02837 Glycosyl hydrolases family 2, sugar binding domain KS4_RS06755 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KS4_RS06755 PF00703 Glycosyl hydrolases family 2 KS4_RS06755 PF02929 Beta galactosidase small chain KS4_RS06765 PF13847 Methyltransferase domain KS4_RS06770 PF01451 Low molecular weight phosphotyrosine protein phosphatase KS4_RS06775 PF01022 Bacterial regulatory protein, arsR family KS4_RS06800 PF01507 Phosphoadenosine phosphosulfate reductase family KS4_RS06805 PF00009 Elongation factor Tu GTP binding domain KS4_RS06810 PF03150 Di-haem cytochrome c peroxidase KS4_RS06810 PF00034 Cytochrome c KS4_RS06815 PF00230 Major intrinsic protein KS4_RS06820 PF01266 FAD dependent oxidoreductase KS4_RS06820 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KS4_RS06825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS4_RS06825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS4_RS06830 PF09339 IclR helix-turn-helix domain KS4_RS06830 PF01614 Bacterial transcriptional regulator KS4_RS06840 PF02675 S-adenosylmethionine decarboxylase KS4_RS06845 PF17284 Spermidine synthase tetramerisation domain KS4_RS06850 PF02491 SHS2 domain inserted in FTSA KS4_RS06870 PF01595 Cyclin M transmembrane N-terminal domain KS4_RS06870 PF03471 Transporter associated domain KS4_RS06870 PF00571 CBS domain KS4_RS06875 PF00571 CBS domain KS4_RS06875 PF03471 Transporter associated domain KS4_RS06885 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KS4_RS06895 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS06900 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS06910 PF00403 Heavy-metal-associated domain KS4_RS06915 PF00115 Cytochrome C and Quinol oxidase polypeptide I KS4_RS06930 PF00543 Nitrogen regulatory protein P-II KS4_RS06935 PF00909 Ammonium Transporter Family KS4_RS06995 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KS4_RS06995 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KS4_RS06995 PF01000 RNA polymerase Rpb3/RpoA insert domain KS4_RS07000 PF00535 Glycosyl transferase family 2 KS4_RS07005 PF00005 ABC transporter KS4_RS07005 PF12848 ABC transporter KS4_RS07010 PF01555 DNA methylase KS4_RS07025 PF02311 AraC-like ligand binding domain KS4_RS07025 PF12833 Helix-turn-helix domain KS4_RS07040 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS07045 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS07070 PF05193 Peptidase M16 inactive domain KS4_RS07070 PF00675 Insulinase (Peptidase family M16) KS4_RS07075 PF00342 Phosphoglucose isomerase KS4_RS07090 PF01207 Dihydrouridine synthase (Dus) KS4_RS07105 PF01380 SIS domain KS4_RS07125 PF02233 NAD(P) transhydrogenase beta subunit KS4_RS07130 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KS4_RS07135 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KS4_RS07135 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KS4_RS07140 PF01894 Uncharacterised protein family UPF0047 KS4_RS07145 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KS4_RS07150 PF00480 ROK family KS4_RS07155 PF01425 Amidase KS4_RS07160 PF02686 Glu-tRNAGln amidotransferase C subunit KS4_RS07165 PF14489 QueF-like protein KS4_RS07170 PF02629 CoA binding domain KS4_RS07170 PF00549 CoA-ligase KS4_RS07190 PF00356 Bacterial regulatory proteins, lacI family KS4_RS07205 PF08532 Beta-galactosidase trimerisation domain KS4_RS07205 PF08533 Beta-galactosidase C-terminal domain KS4_RS07205 PF02449 Beta-galactosidase KS4_RS07215 PF00722 Glycosyl hydrolases family 16 KS4_RS07230 PF12169 DNA polymerase III subunits gamma and tau domain III KS4_RS07235 PF02575 YbaB/EbfC DNA-binding family KS4_RS07255 PF13439 Glycosyltransferase Family 4 KS4_RS07270 PF01593 Flavin containing amine oxidoreductase KS4_RS07275 PF00578 AhpC/TSA family KS4_RS07280 PF00924 Mechanosensitive ion channel KS4_RS07280 PF12795 Mechanosensitive ion channel porin domain KS4_RS07280 PF12794 Mechanosensitive ion channel inner membrane domain 1 KS4_RS07285 PF04244 Deoxyribodipyrimidine photo-lyase-related protein KS4_RS07300 PF03527 RHS protein KS4_RS07310 PF00154 recA bacterial DNA recombination protein KS4_RS07320 PF01527 Transposase KS4_RS07340 PF00999 Sodium/hydrogen exchanger family KS4_RS07350 PF03707 Bacterial signalling protein N terminal repeat KS4_RS07350 PF00563 EAL domain KS4_RS07350 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS07350 PF13188 PAS domain KS4_RS07355 PF00356 Bacterial regulatory proteins, lacI family KS4_RS07395 PF00156 Phosphoribosyl transferase domain KS4_RS07400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KS4_RS07400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KS4_RS07405 PF00625 Guanylate kinase KS4_RS07415 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KS4_RS07425 PF00164 Ribosomal protein S12/S23 KS4_RS07430 PF00177 Ribosomal protein S7p/S5e KS4_RS07435 PF00899 ThiF family KS4_RS07460 PF04715 Anthranilate synthase component I, N terminal region KS4_RS07460 PF00425 chorismate binding enzyme KS4_RS07480 PF13193 AMP-binding enzyme C-terminal domain KS4_RS07480 PF01553 Acyltransferase KS4_RS07480 PF00501 AMP-binding enzyme KS4_RS07490 PF02649 Type I GTP cyclohydrolase folE2 KS4_RS07500 PF00004 ATPase family associated with various cellular activities (AAA) KS4_RS07500 PF05362 Lon protease (S16) C-terminal proteolytic domain KS4_RS07500 PF02190 ATP-dependent protease La (LON) substrate-binding domain KS4_RS07505 PF01923 Cobalamin adenosyltransferase KS4_RS07515 PF00849 RNA pseudouridylate synthase KS4_RS07515 PF01479 S4 domain KS4_RS07560 PF00854 POT family KS4_RS07655 PF00749 tRNA synthetases class I (E and Q), catalytic domain KS4_RS07680 PF00144 Beta-lactamase KS4_RS07690 PF00977 Histidine biosynthesis protein KS4_RS07695 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS07725 PF02910 Fumarate reductase flavoprotein C-term KS4_RS07725 PF00890 FAD binding domain KS4_RS07735 PF13722 5TM C-terminal transporter carbon starvation CstA KS4_RS07735 PF02554 Carbon starvation protein CstA KS4_RS07740 PF01553 Acyltransferase KS4_RS07745 PF02224 Cytidylate kinase KS4_RS07750 PF06725 3D domain KS4_RS07750 PF03562 MltA specific insert domain KS4_RS07760 PF00684 DnaJ central domain KS4_RS07760 PF01556 DnaJ C terminal domain KS4_RS07760 PF00226 DnaJ domain KS4_RS07765 PF00690 Cation transporter/ATPase, N-terminus KS4_RS07765 PF00689 Cation transporting ATPase, C-terminus KS4_RS07775 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KS4_RS07775 PF00391 PEP-utilising enzyme, mobile domain KS4_RS07775 PF02896 PEP-utilising enzyme, TIM barrel domain KS4_RS07800 PF01343 Peptidase family S49 KS4_RS07810 PF02405 Permease MlaE KS4_RS07825 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KS4_RS07840 PF00356 Bacterial regulatory proteins, lacI family KS4_RS07845 PF00144 Beta-lactamase KS4_RS07855 PF00677 Lumazine binding domain KS4_RS07865 PF02938 GAD domain KS4_RS07865 PF00152 tRNA synthetases class II (D, K and N) KS4_RS07865 PF01336 OB-fold nucleic acid binding domain KS4_RS07870 PF00733 Asparagine synthase KS4_RS07870 PF13537 Glutamine amidotransferase domain KS4_RS07885 PF00753 Metallo-beta-lactamase superfamily KS4_RS07890 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KS4_RS07910 PF14748 Pyrroline-5-carboxylate reductase dimerisation KS4_RS07910 PF03807 NADP oxidoreductase coenzyme F420-dependent KS4_RS07915 PF02153 Prephenate dehydrogenase KS4_RS07920 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KS4_RS07925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS07925 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS07945 PF09371 Tex-like protein N-terminal domain KS4_RS07945 PF00575 S1 RNA binding domain KS4_RS07945 PF17674 HHH domain KS4_RS07945 PF16921 Tex protein YqgF-like domain KS4_RS07965 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS07965 PF14602 Hexapeptide repeat of succinyl-transferase KS4_RS07965 PF12804 MobA-like NTP transferase domain KS4_RS07970 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KS4_RS07970 PF14572 Phosphoribosyl synthetase-associated domain KS4_RS07975 PF14693 Ribosomal protein TL5, C-terminal domain KS4_RS07975 PF01386 Ribosomal L25p family KS4_RS07985 PF01195 Peptidyl-tRNA hydrolase KS4_RS07990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KS4_RS07990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KS4_RS07995 PF09382 RQC domain KS4_RS07995 PF00570 HRDC domain KS4_RS07995 PF16124 RecQ zinc-binding KS4_RS07995 PF00270 DEAD/DEAH box helicase KS4_RS07995 PF00271 Helicase conserved C-terminal domain KS4_RS08000 PF00005 ABC transporter KS4_RS08020 PF00156 Phosphoribosyl transferase domain KS4_RS08025 PF08471 Class II vitamin B12-dependent ribonucleotide reductase KS4_RS08025 PF02867 Ribonucleotide reductase, barrel domain KS4_RS08030 PF14815 NUDIX domain KS4_RS08030 PF00730 HhH-GPD superfamily base excision DNA repair protein KS4_RS08030 PF00633 Helix-hairpin-helix motif KS4_RS08035 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain KS4_RS08040 PF02151 UvrB/uvrC motif KS4_RS08045 PF02540 NAD synthase KS4_RS08065 PF00682 HMGL-like KS4_RS08065 PF08502 LeuA allosteric (dimerisation) domain KS4_RS08070 PF02628 Cytochrome oxidase assembly protein KS4_RS08075 PF01040 UbiA prenyltransferase family KS4_RS08080 PF00005 ABC transporter KS4_RS08095 PF04715 Anthranilate synthase component I, N terminal region KS4_RS08095 PF00425 chorismate binding enzyme KS4_RS08100 PF00933 Glycosyl hydrolase family 3 N terminal domain KS4_RS08100 PF01915 Glycosyl hydrolase family 3 C-terminal domain KS4_RS08100 PF07691 PA14 domain KS4_RS08100 PF14310 Fibronectin type III-like domain KS4_RS08105 PF00403 Heavy-metal-associated domain KS4_RS08120 PF00072 Response regulator receiver domain KS4_RS08120 PF00486 Transcriptional regulatory protein, C terminal KS4_RS08125 PF03279 Bacterial lipid A biosynthesis acyltransferase KS4_RS08130 PF03120 NAD-dependent DNA ligase OB-fold domain KS4_RS08130 PF01653 NAD-dependent DNA ligase adenylation domain KS4_RS08130 PF00533 BRCA1 C Terminus (BRCT) domain KS4_RS08130 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KS4_RS08130 PF12826 Helix-hairpin-helix motif KS4_RS08150 PF00571 CBS domain KS4_RS08150 PF01769 Divalent cation transporter KS4_RS08150 PF03448 MgtE intracellular N domain KS4_RS08155 PF01975 Survival protein SurE KS4_RS08160 PF00356 Bacterial regulatory proteins, lacI family KS4_RS08165 PF00475 Imidazoleglycerol-phosphate dehydratase KS4_RS08170 PF00155 Aminotransferase class I and II KS4_RS08180 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KS4_RS08200 PF00072 Response regulator receiver domain KS4_RS08200 PF02954 Bacterial regulatory protein, Fis family KS4_RS08200 PF00158 Sigma-54 interaction domain KS4_RS08210 PF02542 YgbB family KS4_RS08215 PF02838 Glycosyl hydrolase family 20, domain 2 KS4_RS08215 PF07691 PA14 domain KS4_RS08215 PF00728 Glycosyl hydrolase family 20, catalytic domain KS4_RS08225 PF03853 YjeF-related protein N-terminus KS4_RS08235 PF08241 Methyltransferase domain KS4_RS08235 PF13649 Methyltransferase domain KS4_RS08240 PF02743 Cache domain KS4_RS08240 PF00672 HAMP domain KS4_RS08240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS08255 PF01250 Ribosomal protein S6 KS4_RS08260 PF00436 Single-strand binding protein family KS4_RS08265 PF01281 Ribosomal protein L9, N-terminal domain KS4_RS08265 PF03948 Ribosomal protein L9, C-terminal domain KS4_RS08280 PF03989 DNA gyrase C-terminal domain, beta-propeller KS4_RS08280 PF00521 DNA gyrase/topoisomerase IV, subunit A KS4_RS08285 PF00171 Aldehyde dehydrogenase family KS4_RS08290 PF04343 Protein of unknown function, DUF488 KS4_RS08295 PF00962 Adenosine/AMP deaminase KS4_RS08310 PF01926 50S ribosome-binding GTPase KS4_RS08310 PF06071 Protein of unknown function (DUF933) KS4_RS08320 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KS4_RS08320 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KS4_RS08320 PF01488 Shikimate / quinate 5-dehydrogenase KS4_RS08330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KS4_RS08330 PF10414 Sirohaem synthase dimerisation region KS4_RS08335 PF12002 MgsA AAA+ ATPase C terminal KS4_RS08335 PF00004 ATPase family associated with various cellular activities (AAA) KS4_RS08335 PF16193 AAA C-terminal domain KS4_RS08345 PF01507 Phosphoadenosine phosphosulfate reductase family KS4_RS08350 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KS4_RS08355 PF04055 Radical SAM superfamily KS4_RS08360 PF01242 6-pyruvoyl tetrahydropterin synthase KS4_RS08370 PF01202 Shikimate kinase KS4_RS08390 PF16697 Inner membrane component of T3SS, cytoplasmic domain KS4_RS08395 PF04055 Radical SAM superfamily KS4_RS08395 PF06969 HemN C-terminal domain KS4_RS08400 PF07517 SecA DEAD-like domain KS4_RS08400 PF02810 SEC-C motif KS4_RS08400 PF01043 SecA preprotein cross-linking domain KS4_RS08400 PF07516 SecA Wing and Scaffold domain KS4_RS08410 PF00549 CoA-ligase KS4_RS08410 PF08442 ATP-grasp domain KS4_RS08420 PF05552 Conserved TM helix KS4_RS08420 PF00924 Mechanosensitive ion channel KS4_RS08430 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KS4_RS08430 PF03033 Glycosyltransferase family 28 N-terminal domain KS4_RS08460 PF00005 ABC transporter KS4_RS08465 PF07726 ATPase family associated with various cellular activities (AAA) KS4_RS08465 PF17863 AAA lid domain KS4_RS08470 PF02457 DisA bacterial checkpoint controller nucleotide-binding KS4_RS08480 PF00171 Aldehyde dehydrogenase family KS4_RS08500 PF02769 AIR synthase related protein, C-terminal domain KS4_RS08500 PF00586 AIR synthase related protein, N-terminal domain KS4_RS08500 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KS4_RS08505 PF01612 3'-5' exonuclease KS4_RS08505 PF00476 DNA polymerase family A KS4_RS08505 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KS4_RS08505 PF01367 5'-3' exonuclease, C-terminal SAM fold KS4_RS08510 PF00710 Asparaginase, N-terminal KS4_RS08510 PF17763 Glutaminase/Asparaginase C-terminal domain KS4_RS08520 PF00873 AcrB/AcrD/AcrF family KS4_RS08530 PF04055 Radical SAM superfamily KS4_RS08650 PF01381 Helix-turn-helix KS4_RS08665 PF01336 OB-fold nucleic acid binding domain KS4_RS08665 PF02811 PHP domain KS4_RS08665 PF11490 DNA polymerase III polC-type N-terminus II KS4_RS08665 PF14579 Helix-hairpin-helix motif KS4_RS08665 PF14480 DNA polymerase III polC-type N-terminus I KS4_RS08665 PF07733 Bacterial DNA polymerase III alpha NTPase domain KS4_RS08665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KS4_RS08665 PF00929 Exonuclease KS4_RS08715 PF00145 C-5 cytosine-specific DNA methylase KS4_RS08725 PF05225 helix-turn-helix, Psq domain KS4_RS08725 PF02810 SEC-C motif KS4_RS08735 PF00684 DnaJ central domain KS4_RS08735 PF00226 DnaJ domain KS4_RS08735 PF01556 DnaJ C terminal domain KS4_RS08755 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS08755 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS08760 PF07977 FabA-like domain KS4_RS08775 PF02602 Uroporphyrinogen-III synthase HemD KS4_RS08775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KS4_RS08785 PF01230 HIT domain KS4_RS08790 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KS4_RS08790 PF00361 Proton-conducting membrane transporter KS4_RS08790 PF13244 Domain of unknown function (DUF4040) KS4_RS08795 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KS4_RS08800 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KS4_RS08805 PF00361 Proton-conducting membrane transporter KS4_RS08815 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KS4_RS08820 PF03334 Na+/H+ antiporter subunit KS4_RS08835 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KS4_RS08845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KS4_RS08845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS4_RS08850 PF01048 Phosphorylase superfamily KS4_RS08855 PF01467 Cytidylyltransferase-like KS4_RS08860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KS4_RS08860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS4_RS08870 PF01842 ACT domain KS4_RS08870 PF00742 Homoserine dehydrogenase KS4_RS08870 PF03447 Homoserine dehydrogenase, NAD binding domain KS4_RS08875 PF01475 Ferric uptake regulator family KS4_RS08880 PF03884 DNA gyrase inhibitor YacG KS4_RS08885 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KS4_RS08890 PF00586 AIR synthase related protein, N-terminal domain KS4_RS08890 PF02769 AIR synthase related protein, C-terminal domain KS4_RS08895 PF11897 Protein of unknown function (DUF3417) KS4_RS08895 PF00343 Carbohydrate phosphorylase KS4_RS08900 PF01618 MotA/TolQ/ExbB proton channel family KS4_RS08910 PF00072 Response regulator receiver domain KS4_RS08910 PF00196 Bacterial regulatory proteins, luxR family KS4_RS08915 PF02154 Flagellar motor switch protein FliM KS4_RS08915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KS4_RS08920 PF01180 Dihydroorotate dehydrogenase KS4_RS08925 PF00156 Phosphoribosyl transferase domain KS4_RS08930 PF03483 B3/4 domain KS4_RS08930 PF03484 tRNA synthetase B5 domain KS4_RS08930 PF03147 Ferredoxin-fold anticodon binding domain KS4_RS08930 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KS4_RS08945 PF00654 Voltage gated chloride channel KS4_RS08965 PF01192 RNA polymerase Rpb6 KS4_RS08970 PF02441 Flavoprotein KS4_RS08970 PF04127 DNA / pantothenate metabolism flavoprotein KS4_RS08985 PF00155 Aminotransferase class I and II KS4_RS08990 PF01411 tRNA synthetases class II (A) KS4_RS08990 PF02272 DHHA1 domain KS4_RS08990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KS4_RS09000 PF13439 Glycosyltransferase Family 4 KS4_RS09000 PF00534 Glycosyl transferases group 1 KS4_RS09015 PF01842 ACT domain KS4_RS09015 PF01817 Chorismate mutase type II KS4_RS09015 PF00800 Prephenate dehydratase KS4_RS09030 PF03372 Endonuclease/Exonuclease/phosphatase family KS4_RS09050 PF08546 Ketopantoate reductase PanE/ApbA C terminal KS4_RS09050 PF02558 Ketopantoate reductase PanE/ApbA KS4_RS09055 PF02837 Glycosyl hydrolases family 2, sugar binding domain KS4_RS09055 PF16355 Domain of unknown function (DUF4982) KS4_RS09055 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KS4_RS09055 PF00703 Glycosyl hydrolases family 2 KS4_RS09060 PF05697 Bacterial trigger factor protein (TF) KS4_RS09060 PF05698 Bacterial trigger factor protein (TF) C-terminus KS4_RS09070 PF07724 AAA domain (Cdc48 subfamily) KS4_RS09070 PF06689 ClpX C4-type zinc finger KS4_RS09070 PF10431 C-terminal, D2-small domain, of ClpB protein KS4_RS09075 PF03572 Peptidase family S41 KS4_RS09075 PF13180 PDZ domain KS4_RS09080 PF01264 Chorismate synthase KS4_RS09090 PF07859 alpha/beta hydrolase fold KS4_RS09095 PF00575 S1 RNA binding domain KS4_RS09120 PF13662 Toprim domain KS4_RS09120 PF02132 RecR protein KS4_RS09125 PF00309 Sigma-54 factor, Activator interacting domain (AID) KS4_RS09125 PF04963 Sigma-54 factor, core binding domain KS4_RS09125 PF04552 Sigma-54, DNA binding domain KS4_RS09130 PF00440 Bacterial regulatory proteins, tetR family KS4_RS09135 PF00288 GHMP kinases N terminal domain KS4_RS09135 PF08544 GHMP kinases C terminal KS4_RS09145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS4_RS09145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS4_RS09150 PF02867 Ribonucleotide reductase, barrel domain KS4_RS09150 PF08471 Class II vitamin B12-dependent ribonucleotide reductase KS4_RS09160 PF00692 dUTPase KS4_RS09165 PF02272 DHHA1 domain KS4_RS09165 PF01368 DHH family KS4_RS09170 PF01687 Riboflavin kinase KS4_RS09170 PF06574 FAD synthetase KS4_RS09175 PF00578 AhpC/TSA family KS4_RS09180 PF14622 Ribonuclease-III-like KS4_RS09180 PF00035 Double-stranded RNA binding motif KS4_RS09195 PF00468 Ribosomal protein L34 KS4_RS09200 PF00113 Enolase, C-terminal TIM barrel domain KS4_RS09200 PF03952 Enolase, N-terminal domain KS4_RS09220 PF06733 DEAD_2 KS4_RS09220 PF13307 Helicase C-terminal domain KS4_RS09230 PF16320 Ribosomal protein L7/L12 dimerisation domain KS4_RS09230 PF00542 Ribosomal protein L7/L12 C-terminal domain KS4_RS09235 PF00466 Ribosomal protein L10 KS4_RS09240 PF00687 Ribosomal protein L1p/L10e family KS4_RS09245 PF03946 Ribosomal protein L11, N-terminal domain KS4_RS09245 PF00298 Ribosomal protein L11, RNA binding domain KS4_RS09255 PF01081 KDPG and KHG aldolase KS4_RS09260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS09260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS09280 PF13580 SIS domain KS4_RS09285 PF00480 ROK family KS4_RS09300 PF07075 Protein of unknown function (DUF1343) KS4_RS09305 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KS4_RS09315 PF01476 LysM domain KS4_RS09320 PF00455 DeoR C terminal sensor domain KS4_RS09320 PF08220 DeoR-like helix-turn-helix domain KS4_RS09325 PF00056 lactate/malate dehydrogenase, NAD binding domain KS4_RS09325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KS4_RS09330 PF00596 Class II Aldolase and Adducin N-terminal domain KS4_RS09350 PF00171 Aldehyde dehydrogenase family KS4_RS09355 PF03319 Ethanolamine utilisation protein EutN/carboxysome KS4_RS09360 PF00936 BMC domain KS4_RS09365 PF00871 Acetokinase family KS4_RS09370 PF00936 BMC domain KS4_RS09375 PF00936 BMC domain KS4_RS09380 PF06130 Phosphate propanoyltransferase KS4_RS09390 PF00474 Sodium:solute symporter family KS4_RS09395 PF07497 Rho termination factor, RNA-binding domain KS4_RS09395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS4_RS09400 PF01121 Dephospho-CoA kinase KS4_RS09410 PF00437 Type II/IV secretion system protein KS4_RS09410 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KS4_RS09415 PF00437 Type II/IV secretion system protein KS4_RS09425 PF03062 MBOAT, membrane-bound O-acyltransferase family KS4_RS09445 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KS4_RS09445 PF00437 Type II/IV secretion system protein KS4_RS09450 PF00482 Type II secretion system (T2SS), protein F KS4_RS09485 PF01230 HIT domain KS4_RS09500 PF00551 Formyl transferase KS4_RS09500 PF02911 Formyl transferase, C-terminal domain KS4_RS09505 PF01327 Polypeptide deformylase KS4_RS09510 PF00216 Bacterial DNA-binding protein KS4_RS09515 PF00155 Aminotransferase class I and II KS4_RS09520 PF01022 Bacterial regulatory protein, arsR family KS4_RS09525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KS4_RS09525 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS09530 PF11127 Protein of unknown function (DUF2892) KS4_RS09530 PF00581 Rhodanese-like domain KS4_RS09535 PF10609 NUBPL iron-transfer P-loop NTPase KS4_RS09535 PF01883 Iron-sulfur cluster assembly protein KS4_RS09545 PF00005 ABC transporter KS4_RS09560 PF01979 Amidohydrolase family KS4_RS09575 PF04545 Sigma-70, region 4 KS4_RS09575 PF04542 Sigma-70 region 2 KS4_RS09585 PF04055 Radical SAM superfamily KS4_RS09585 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KS4_RS09585 PF13186 Iron-sulfur cluster-binding domain KS4_RS09590 PF02527 rRNA small subunit methyltransferase G KS4_RS09595 PF01098 Cell cycle protein KS4_RS09600 PF00905 Penicillin binding protein transpeptidase domain KS4_RS09600 PF03717 Penicillin-binding Protein dimerisation domain KS4_RS09605 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KS4_RS09610 PF17755 UvrA DNA-binding domain KS4_RS09610 PF17760 UvrA interaction domain KS4_RS09615 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS09615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS09625 PF01084 Ribosomal protein S18 KS4_RS09630 PF01784 NIF3 (NGG1p interacting factor 3) KS4_RS09640 PF00293 NUDIX domain KS4_RS09645 PF00155 Aminotransferase class I and II KS4_RS09655 PF00266 Aminotransferase class-V KS4_RS09670 PF13439 Glycosyltransferase Family 4 KS4_RS09670 PF00534 Glycosyl transferases group 1 KS4_RS09675 PF00437 Type II/IV secretion system protein KS4_RS09675 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KS4_RS09700 PF07724 AAA domain (Cdc48 subfamily) KS4_RS09700 PF00004 ATPase family associated with various cellular activities (AAA) KS4_RS09700 PF10431 C-terminal, D2-small domain, of ClpB protein KS4_RS09705 PF01078 Magnesium chelatase, subunit ChlI KS4_RS09705 PF13335 Magnesium chelatase, subunit ChlI C-terminal KS4_RS09710 PF01467 Cytidylyltransferase-like KS4_RS09720 PF00149 Calcineurin-like phosphoesterase KS4_RS09730 PF02666 Phosphatidylserine decarboxylase KS4_RS09745 PF02595 Glycerate kinase family KS4_RS09755 PF14437 MafB19-like deaminase KS4_RS09770 PF17191 RecG wedge domain KS4_RS09770 PF00270 DEAD/DEAH box helicase KS4_RS09770 PF00271 Helicase conserved C-terminal domain KS4_RS09775 PF13419 Haloacid dehalogenase-like hydrolase KS4_RS09780 PF11897 Protein of unknown function (DUF3417) KS4_RS09780 PF00343 Carbohydrate phosphorylase KS4_RS09785 PF02446 4-alpha-glucanotransferase KS4_RS09795 PF07687 Peptidase dimerisation domain KS4_RS09795 PF01546 Peptidase family M20/M25/M40 KS4_RS09800 PF00920 Dehydratase family KS4_RS09810 PF13580 SIS domain KS4_RS09815 PF16199 Radical_SAM C-terminal domain KS4_RS09815 PF04055 Radical SAM superfamily KS4_RS09820 PF02397 Bacterial sugar transferase KS4_RS09835 PF01471 Putative peptidoglycan binding domain KS4_RS09835 PF13401 AAA domain KS4_RS09840 PF13614 AAA domain KS4_RS09860 PF02562 PhoH-like protein KS4_RS09865 PF07698 7TM receptor with intracellular HD hydrolase KS4_RS09865 PF07697 7TM-HD extracellular KS4_RS09865 PF01966 HD domain KS4_RS09890 PF00356 Bacterial regulatory proteins, lacI family KS4_RS09930 PF01209 ubiE/COQ5 methyltransferase family KS4_RS09935 PF01435 Peptidase family M48 KS4_RS09940 PF02310 B12 binding domain KS4_RS09940 PF02607 B12 binding domain KS4_RS09945 PF00294 pfkB family carbohydrate kinase KS4_RS09955 PF00437 Type II/IV secretion system protein KS4_RS09975 PF03793 PASTA domain KS4_RS09975 PF00069 Protein kinase domain KS4_RS09985 PF00437 Type II/IV secretion system protein KS4_RS10005 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS10015 PF00472 RF-1 domain KS4_RS10015 PF03462 PCRF domain KS4_RS10020 PF01197 Ribosomal protein L31 KS4_RS10025 PF01063 Amino-transferase class IV KS4_RS10045 PF07963 Prokaryotic N-terminal methylation motif KS4_RS10045 PF08334 Type II secretion system (T2SS), protein G KS4_RS10050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS10050 PF00672 HAMP domain KS4_RS10050 PF02743 Cache domain KS4_RS10060 PF00117 Glutamine amidotransferase class-I KS4_RS10085 PF00893 Small Multidrug Resistance protein KS4_RS10090 PF01478 Type IV leader peptidase family KS4_RS10090 PF06750 Bacterial Peptidase A24 N-terminal domain KS4_RS10095 PF02609 Exonuclease VII small subunit KS4_RS10100 PF02601 Exonuclease VII, large subunit KS4_RS10100 PF13742 OB-fold nucleic acid binding domain KS4_RS10105 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KS4_RS10105 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KS4_RS10125 PF00117 Glutamine amidotransferase class-I KS4_RS10125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KS4_RS10135 PF17944 Arginine decarboxylase C-terminal helical extension KS4_RS10135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KS4_RS10135 PF17810 Arginine decarboxylase helical bundle domain KS4_RS10150 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KS4_RS10150 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KS4_RS10155 PF08279 HTH domain KS4_RS10155 PF03099 Biotin/lipoate A/B protein ligase family KS4_RS10155 PF02237 Biotin protein ligase C terminal domain KS4_RS10165 PF00155 Aminotransferase class I and II KS4_RS10180 PF01648 4'-phosphopantetheinyl transferase superfamily KS4_RS10185 PF04055 Radical SAM superfamily KS4_RS10200 PF00106 short chain dehydrogenase KS4_RS10215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS4_RS10220 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KS4_RS10220 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KS4_RS10220 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KS4_RS10230 PF05140 ResB-like family KS4_RS10230 PF01578 Cytochrome C assembly protein KS4_RS10235 PF02245 Methylpurine-DNA glycosylase (MPG) KS4_RS10240 PF00575 S1 RNA binding domain KS4_RS10250 PF01066 CDP-alcohol phosphatidyltransferase KS4_RS10260 PF01156 Inosine-uridine preferring nucleoside hydrolase KS4_RS10280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS4_RS10280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS4_RS10290 PF02838 Glycosyl hydrolase family 20, domain 2 KS4_RS10290 PF07691 PA14 domain KS4_RS10290 PF00728 Glycosyl hydrolase family 20, catalytic domain KS4_RS10300 PF01965 DJ-1/PfpI family KS4_RS10310 PF09190 DALR domain KS4_RS10310 PF01406 tRNA synthetases class I (C) catalytic domain KS4_RS10315 PF00571 CBS domain KS4_RS10315 PF03471 Transporter associated domain KS4_RS10320 PF02130 Uncharacterized protein family UPF0054 KS4_RS10345 PF00994 Probable molybdopterin binding domain KS4_RS10360 PF00166 Chaperonin 10 Kd subunit KS4_RS10365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KS4_RS10370 PF00664 ABC transporter transmembrane region KS4_RS10370 PF00005 ABC transporter KS4_RS10390 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal KS4_RS10390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KS4_RS10390 PF00384 Molybdopterin oxidoreductase KS4_RS10395 PF08362 YcdC-like protein, C-terminal region KS4_RS10395 PF00440 Bacterial regulatory proteins, tetR family KS4_RS10400 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KS4_RS10405 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KS4_RS10410 PF00361 Proton-conducting membrane transporter KS4_RS10410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KS4_RS10415 PF00361 Proton-conducting membrane transporter KS4_RS10415 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus KS4_RS10420 PF00361 Proton-conducting membrane transporter KS4_RS10435 PF00300 Histidine phosphatase superfamily (branch 1) KS4_RS10440 PF00440 Bacterial regulatory proteins, tetR family KS4_RS10440 PF08359 YsiA-like protein, C-terminal region KS4_RS10455 PF04023 FeoA domain KS4_RS10455 PF07664 Ferrous iron transport protein B C terminus KS4_RS10455 PF17910 FeoB cytosolic helical domain KS4_RS10455 PF02421 Ferrous iron transport protein B KS4_RS10455 PF07670 Nucleoside recognition KS4_RS10475 PF00290 Tryptophan synthase alpha chain KS4_RS10485 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase KS4_RS10500 PF03725 3' exoribonuclease family, domain 2 KS4_RS10500 PF01138 3' exoribonuclease family, domain 1 KS4_RS10510 PF02719 Polysaccharide biosynthesis protein KS4_RS10520 PF01026 TatD related DNase KS4_RS10525 PF03190 Protein of unknown function, DUF255 KS4_RS10530 PF01223 DNA/RNA non-specific endonuclease KS4_RS10545 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KS4_RS10545 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KS4_RS10550 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KS4_RS10555 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KS4_RS10555 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KS4_RS10560 PF01134 Glucose inhibited division protein A KS4_RS10560 PF13932 GidA associated domain KS4_RS10565 PF03448 MgtE intracellular N domain KS4_RS10565 PF01769 Divalent cation transporter KS4_RS10565 PF00571 CBS domain KS4_RS10575 PF00206 Lyase KS4_RS10575 PF10415 Fumarase C C-terminus KS4_RS10585 PF00999 Sodium/hydrogen exchanger family KS4_RS10600 PF00438 S-adenosylmethionine synthetase, N-terminal domain KS4_RS10600 PF02772 S-adenosylmethionine synthetase, central domain KS4_RS10600 PF02773 S-adenosylmethionine synthetase, C-terminal domain KS4_RS10605 PF05524 PEP-utilising enzyme, N-terminal KS4_RS10605 PF02896 PEP-utilising enzyme, TIM barrel domain KS4_RS10605 PF00391 PEP-utilising enzyme, mobile domain KS4_RS10610 PF00575 S1 RNA binding domain KS4_RS10610 PF12111 Polyribonucleotide phosphorylase C terminal KS4_RS10610 PF10150 Ribonuclease E/G family KS4_RS10615 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KS4_RS10615 PF13288 DXP reductoisomerase C-terminal domain KS4_RS10615 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KS4_RS10620 PF17820 PDZ domain KS4_RS10620 PF02163 Peptidase family M50 KS4_RS10625 PF14849 YidC periplasmic domain KS4_RS10625 PF02096 60Kd inner membrane protein KS4_RS10630 PF01926 50S ribosome-binding GTPase KS4_RS10630 PF12631 MnmE helical domain KS4_RS10630 PF10396 GTP-binding protein TrmE N-terminus KS4_RS10635 PF01668 SmpB protein KS4_RS10645 PF00875 DNA photolyase KS4_RS10645 PF03441 FAD binding domain of DNA photolyase KS4_RS10655 PF00271 Helicase conserved C-terminal domain KS4_RS10655 PF12344 Ultra-violet resistance protein B KS4_RS10655 PF02151 UvrB/uvrC motif KS4_RS10655 PF04851 Type III restriction enzyme, res subunit KS4_RS10655 PF17757 UvrB interaction domain KS4_RS10670 PF00535 Glycosyl transferase family 2 KS4_RS10675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KS4_RS10675 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 KS4_RS10675 PF00703 Glycosyl hydrolases family 2 KS4_RS10675 PF02837 Glycosyl hydrolases family 2, sugar binding domain KS4_RS10680 PF07883 Cupin domain KS4_RS10680 PF12833 Helix-turn-helix domain KS4_RS10695 PF01926 50S ribosome-binding GTPase KS4_RS10695 PF12631 MnmE helical domain KS4_RS10695 PF10396 GTP-binding protein TrmE N-terminus KS4_RS10705 PF01645 Conserved region in glutamate synthase KS4_RS10720 PF00128 Alpha amylase, catalytic domain KS4_RS10720 PF02903 Alpha amylase, N-terminal ig-like domain KS4_RS10720 PF16657 Maltogenic Amylase, C-terminal domain KS4_RS10725 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KS4_RS10730 PF00210 Ferritin-like domain KS4_RS10740 PF04542 Sigma-70 region 2 KS4_RS10740 PF08281 Sigma-70, region 4 KS4_RS10760 PF01116 Fructose-bisphosphate aldolase class-II KS4_RS10765 PF01960 ArgJ family KS4_RS10770 PF01968 Hydantoinase/oxoprolinase KS4_RS10770 PF05378 Hydantoinase/oxoprolinase N-terminal region KS4_RS10790 PF03129 Anticodon binding domain KS4_RS10790 PF09180 Prolyl-tRNA synthetase, C-terminal KS4_RS10790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS4_RS10845 PF00180 Isocitrate/isopropylmalate dehydrogenase KS4_RS10865 PF01343 Peptidase family S49 KS4_RS10870 PF01969 Protein of unknown function DUF111 KS4_RS10885 PF01678 Diaminopimelate epimerase KS4_RS10895 PF00289 Biotin carboxylase, N-terminal domain KS4_RS10895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KS4_RS10895 PF02785 Biotin carboxylase C-terminal domain KS4_RS10900 PF00364 Biotin-requiring enzyme KS4_RS10905 PF00557 Metallopeptidase family M24 KS4_RS10905 PF01321 Creatinase/Prolidase N-terminal domain KS4_RS10910 PF01502 Phosphoribosyl-AMP cyclohydrolase KS4_RS10920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KS4_RS10925 PF00890 FAD binding domain KS4_RS10925 PF02910 Fumarate reductase flavoprotein C-term KS4_RS10930 PF13085 2Fe-2S iron-sulfur cluster binding domain KS4_RS10930 PF13183 4Fe-4S dicluster domain KS4_RS10945 PF07470 Glycosyl Hydrolase Family 88 KS4_RS10950 PF00266 Aminotransferase class-V KS4_RS10960 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KS4_RS10965 PF01343 Peptidase family S49 KS4_RS10975 PF00809 Pterin binding enzyme KS4_RS10975 PF02574 Homocysteine S-methyltransferase KS4_RS10975 PF02310 B12 binding domain KS4_RS10975 PF02607 B12 binding domain KS4_RS10975 PF02965 Vitamin B12 dependent methionine synthase, activation domain KS4_RS10980 PF02673 Bacitracin resistance protein BacA KS4_RS11010 PF01513 ATP-NAD kinase KS4_RS11235 PF00145 C-5 cytosine-specific DNA methylase KS4_RS11270 PF00772 DnaB-like helicase N terminal domain KS4_RS11270 PF03796 DnaB-like helicase C terminal domain KS4_RS11275 PF00436 Single-strand binding protein family KS4_RS11380 PF01625 Peptide methionine sulfoxide reductase KS4_RS11390 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS11415 PF04551 GcpE protein KS4_RS11425 PF01238 Phosphomannose isomerase type I KS4_RS11430 PF04041 beta-1,4-mannooligosaccharide phosphorylase KS4_RS11450 PF04055 Radical SAM superfamily KS4_RS11450 PF00919 Uncharacterized protein family UPF0004 KS4_RS11450 PF01938 TRAM domain KS4_RS11460 PF17200 Single Cache domain 2 KS4_RS11460 PF00672 HAMP domain KS4_RS11460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS11465 PF00581 Rhodanese-like domain KS4_RS11470 PF00144 Beta-lactamase KS4_RS11475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KS4_RS11475 PF10531 SLBB domain KS4_RS11475 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KS4_RS11490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KS4_RS11495 PF08331 Domain of unknown function (DUF1730) KS4_RS11510 PF00163 Ribosomal protein S4/S9 N-terminal domain KS4_RS11510 PF01479 S4 domain KS4_RS11525 PF18073 Rubredoxin metal binding domain KS4_RS11530 PF13180 PDZ domain KS4_RS11530 PF03572 Peptidase family S41 KS4_RS11535 PF00814 Glycoprotease family KS4_RS11550 PF12706 Beta-lactamase superfamily domain KS4_RS11550 PF03099 Biotin/lipoate A/B protein ligase family KS4_RS11560 PF00218 Indole-3-glycerol phosphate synthase KS4_RS11590 PF00146 NADH dehydrogenase KS4_RS11595 PF10502 Signal peptidase, peptidase S26 KS4_RS11605 PF10502 Signal peptidase, peptidase S26 KS4_RS11610 PF01842 ACT domain KS4_RS11610 PF10369 Small subunit of acetolactate synthase KS4_RS11615 PF02261 Aspartate decarboxylase KS4_RS11625 PF00989 PAS fold KS4_RS11625 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS11625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS11640 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KS4_RS11645 PF00128 Alpha amylase, catalytic domain KS4_RS11650 PF13476 AAA domain KS4_RS11665 PF03825 Nucleoside H+ symporter KS4_RS11675 PF13344 Haloacid dehalogenase-like hydrolase KS4_RS11680 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KS4_RS11680 PF01266 FAD dependent oxidoreductase KS4_RS11685 PF13685 Iron-containing alcohol dehydrogenase KS4_RS11695 PF00696 Amino acid kinase family KS4_RS11695 PF13840 ACT domain KS4_RS11715 PF02441 Flavoprotein KS4_RS11725 PF00793 DAHP synthetase I family KS4_RS11725 PF18152 DAHP synthase ferredoxin-like domain KS4_RS11735 PF00293 NUDIX domain KS4_RS11745 PF00294 pfkB family carbohydrate kinase KS4_RS11760 PF03480 Bacterial extracellular solute-binding protein, family 7 KS4_RS11765 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KS4_RS11770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KS4_RS11780 PF11954 Domain of unknown function (DUF3471) KS4_RS11780 PF00144 Beta-lactamase KS4_RS11795 PF00581 Rhodanese-like domain KS4_RS11810 PF00037 4Fe-4S binding domain KS4_RS11815 PF00144 Beta-lactamase KS4_RS11820 PF02386 Cation transport protein KS4_RS11825 PF02254 TrkA-N domain KS4_RS11825 PF02080 TrkA-C domain KS4_RS11835 PF00893 Small Multidrug Resistance protein KS4_RS11860 PF02386 Cation transport protein KS4_RS11885 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KS4_RS11885 PF02585 GlcNAc-PI de-N-acetylase KS4_RS11895 PF10509 Galactokinase galactose-binding signature KS4_RS11895 PF08544 GHMP kinases C terminal KS4_RS11895 PF00288 GHMP kinases N terminal domain KS4_RS11900 PF13291 ACT domain KS4_RS11900 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS11905 PF00664 ABC transporter transmembrane region KS4_RS11905 PF00005 ABC transporter KS4_RS11910 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS11910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS11915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS11915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS11920 PF00072 Response regulator receiver domain KS4_RS11920 PF03861 ANTAR domain KS4_RS11935 PF00535 Glycosyl transferase family 2 KS4_RS11940 PF00535 Glycosyl transferase family 2 KS4_RS11955 PF00535 Glycosyl transferase family 2 KS4_RS11965 PF04545 Sigma-70, region 4 KS4_RS11965 PF03979 Sigma-70 factor, region 1.1 KS4_RS11965 PF04542 Sigma-70 region 2 KS4_RS11965 PF00140 Sigma-70 factor, region 1.2 KS4_RS11965 PF04539 Sigma-70 region 3 KS4_RS11970 PF01807 CHC2 zinc finger KS4_RS11970 PF10410 DnaB-helicase binding domain of primase KS4_RS11970 PF08275 DNA primase catalytic core, N-terminal domain KS4_RS11980 PF00830 Ribosomal L28 family KS4_RS11985 PF00550 Phosphopantetheine attachment site KS4_RS11985 PF08659 KR domain KS4_RS11985 PF02801 Beta-ketoacyl synthase, C-terminal domain KS4_RS11985 PF00109 Beta-ketoacyl synthase, N-terminal domain KS4_RS11985 PF16197 Ketoacyl-synthetase C-terminal extension KS4_RS11985 PF08240 Alcohol dehydrogenase GroES-like domain KS4_RS11985 PF00698 Acyl transferase domain KS4_RS11985 PF14765 Polyketide synthase dehydratase KS4_RS11995 PF01926 50S ribosome-binding GTPase KS4_RS11995 PF16360 GTP-binding GTPase Middle Region KS4_RS11995 PF13167 GTP-binding GTPase N-terminal KS4_RS12000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS12000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS12010 PF05922 Peptidase inhibitor I9 KS4_RS12010 PF02225 PA domain KS4_RS12010 PF00082 Subtilase family KS4_RS12010 PF13860 FlgD Ig-like domain KS4_RS12020 PF01676 Metalloenzyme superfamily KS4_RS12020 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase KS4_RS12035 PF00005 ABC transporter KS4_RS12040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KS4_RS12070 PF13638 PIN domain KS4_RS12070 PF02562 PhoH-like protein KS4_RS12075 PF05175 Methyltransferase small domain KS4_RS12075 PF08468 Methyltransferase small domain N-terminal KS4_RS12090 PF08502 LeuA allosteric (dimerisation) domain KS4_RS12090 PF00682 HMGL-like KS4_RS12095 PF01381 Helix-turn-helix KS4_RS12095 PF07883 Cupin domain KS4_RS12100 PF08240 Alcohol dehydrogenase GroES-like domain KS4_RS12100 PF00107 Zinc-binding dehydrogenase KS4_RS12105 PF00155 Aminotransferase class I and II KS4_RS12115 PF00180 Isocitrate/isopropylmalate dehydrogenase KS4_RS12120 PF07681 DoxX KS4_RS12135 PF00719 Inorganic pyrophosphatase KS4_RS12145 PF08032 RNA 2'-O ribose methyltransferase substrate binding KS4_RS12145 PF00588 SpoU rRNA Methylase family KS4_RS12150 PF06470 SMC proteins Flexible Hinge Domain KS4_RS12150 PF02463 RecF/RecN/SMC N terminal domain KS4_RS12160 PF00156 Phosphoribosyl transferase domain KS4_RS12170 PF01501 Glycosyl transferase family 8 KS4_RS12170 PF08437 Glycosyl transferase family 8 C-terminal KS4_RS12175 PF00815 Histidinol dehydrogenase KS4_RS12180 PF17782 DprA winged helix domain KS4_RS12180 PF02481 DNA recombination-mediator protein A KS4_RS12195 PF00072 Response regulator receiver domain KS4_RS12195 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS12200 PF00700 Bacterial flagellin C-terminal helical region KS4_RS12200 PF00669 Bacterial flagellin N-terminal helical region KS4_RS12200 PF07196 Flagellin hook IN motif KS4_RS12205 PF00700 Bacterial flagellin C-terminal helical region KS4_RS12205 PF00669 Bacterial flagellin N-terminal helical region KS4_RS12205 PF07196 Flagellin hook IN motif KS4_RS12210 PF07196 Flagellin hook IN motif KS4_RS12210 PF00700 Bacterial flagellin C-terminal helical region KS4_RS12210 PF00669 Bacterial flagellin N-terminal helical region KS4_RS12225 PF04079 Segregation and condensation complex subunit ScpB KS4_RS12250 PF00535 Glycosyl transferase family 2 KS4_RS12280 PF17792 ThiD2 family KS4_RS12280 PF02581 Thiamine monophosphate synthase KS4_RS12300 PF07497 Rho termination factor, RNA-binding domain KS4_RS12300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS4_RS12310 PF00919 Uncharacterized protein family UPF0004 KS4_RS12310 PF04055 Radical SAM superfamily KS4_RS12310 PF18693 TRAM domain KS4_RS12320 PF02397 Bacterial sugar transferase KS4_RS12325 PF02706 Chain length determinant protein KS4_RS12325 PF13807 G-rich domain on putative tyrosine kinase KS4_RS12325 PF13614 AAA domain KS4_RS12340 PF03808 Glycosyl transferase WecB/TagA/CpsF family KS4_RS12350 PF00535 Glycosyl transferase family 2 KS4_RS12365 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KS4_RS12375 PF00483 Nucleotidyl transferase KS4_RS12405 PF00440 Bacterial regulatory proteins, tetR family KS4_RS12410 PF01557 Fumarylacetoacetate (FAA) hydrolase family KS4_RS12430 PF00392 Bacterial regulatory proteins, gntR family KS4_RS12430 PF07702 UTRA domain KS4_RS12440 PF12833 Helix-turn-helix domain KS4_RS12440 PF12852 Cupin KS4_RS12445 PF12680 SnoaL-like domain KS4_RS12445 PF08281 Sigma-70, region 4 KS4_RS12445 PF04542 Sigma-70 region 2 KS4_RS12455 PF18807 Tripartite Tc toxins repeat KS4_RS12455 PF14431 YwqJ-like deaminase KS4_RS12475 PF07940 Heparinase II/III-like protein KS4_RS12475 PF18675 Heparinase II C-terminal domain KS4_RS12480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS12490 PF00232 Glycosyl hydrolase family 1 KS4_RS12495 PF00356 Bacterial regulatory proteins, lacI family KS4_RS12540 PF08334 Type II secretion system (T2SS), protein G KS4_RS12540 PF07963 Prokaryotic N-terminal methylation motif KS4_RS12545 PF00482 Type II secretion system (T2SS), protein F KS4_RS12550 PF00437 Type II/IV secretion system protein KS4_RS12555 PF00263 Bacterial type II and III secretion system protein KS4_RS12555 PF03958 Bacterial type II/III secretion system short domain KS4_RS12565 PF00202 Aminotransferase class-III KS4_RS12575 PF00478 IMP dehydrogenase / GMP reductase domain KS4_RS12575 PF00571 CBS domain KS4_RS12590 PF00654 Voltage gated chloride channel KS4_RS12600 PF00825 Ribonuclease P KS4_RS12605 PF01809 Putative membrane protein insertion efficiency factor KS4_RS12615 PF03631 Virulence factor BrkB KS4_RS12640 PF00795 Carbon-nitrogen hydrolase KS4_RS12640 PF02540 NAD synthase KS4_RS12665 PF02801 Beta-ketoacyl synthase, C-terminal domain KS4_RS12665 PF00109 Beta-ketoacyl synthase, N-terminal domain KS4_RS12670 PF13180 PDZ domain KS4_RS12680 PF02223 Thymidylate kinase KS4_RS12685 PF00474 Sodium:solute symporter family KS4_RS12690 PF01209 ubiE/COQ5 methyltransferase family KS4_RS12695 PF05690 Thiazole biosynthesis protein ThiG KS4_RS12705 PF00085 Thioredoxin KS4_RS12710 PF08241 Methyltransferase domain KS4_RS12725 PF00474 Sodium:solute symporter family KS4_RS12760 PF01588 Putative tRNA binding domain KS4_RS12760 PF09334 tRNA synthetases class I (M) KS4_RS12785 PF00072 Response regulator receiver domain KS4_RS12785 PF01339 CheB methylesterase KS4_RS12815 PF00694 Aconitase C-terminal domain KS4_RS12815 PF00330 Aconitase family (aconitate hydratase) KS4_RS12825 PF01751 Toprim domain KS4_RS12825 PF01396 Topoisomerase DNA binding C4 zinc finger KS4_RS12825 PF01131 DNA topoisomerase KS4_RS12830 PF00722 Glycosyl hydrolases family 16 KS4_RS12835 PF03951 Glutamine synthetase, beta-Grasp domain KS4_RS12835 PF00120 Glutamine synthetase, catalytic domain KS4_RS12840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KS4_RS12840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KS4_RS12840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KS4_RS12840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KS4_RS12855 PF08264 Anticodon-binding domain of tRNA KS4_RS12855 PF01588 Putative tRNA binding domain KS4_RS12855 PF09334 tRNA synthetases class I (M) KS4_RS12870 PF02390 Putative methyltransferase KS4_RS12870 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KS4_RS12875 PF00696 Amino acid kinase family KS4_RS12875 PF01472 PUA domain KS4_RS12900 PF02472 Biopolymer transport protein ExbD/TolR KS4_RS12915 PF01761 3-dehydroquinate synthase KS4_RS12920 PF02540 NAD synthase KS4_RS12920 PF00958 GMP synthase C terminal domain KS4_RS12920 PF00117 Glutamine amidotransferase class-I KS4_RS12940 PF00210 Ferritin-like domain KS4_RS12975 PF13520 Amino acid permease KS4_RS12980 PF04074 YhcH/YjgK/YiaL KS4_RS12985 PF11798 IMS family HHH motif KS4_RS12985 PF00817 impB/mucB/samB family KS4_RS12985 PF11799 impB/mucB/samB family C-terminal domain KS4_RS13015 PF00005 ABC transporter KS4_RS13015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS4_RS13020 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS13020 PF12911 N-terminal TM domain of oligopeptide transport permease C KS4_RS13025 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS13030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KS4_RS13035 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS13035 PF12911 N-terminal TM domain of oligopeptide transport permease C KS4_RS13045 PF03960 ArsC family KS4_RS13050 PF06826 Predicted Permease Membrane Region KS4_RS13050 PF02080 TrkA-C domain KS4_RS13065 PF02934 GatB/GatE catalytic domain KS4_RS13065 PF02637 GatB domain KS4_RS13080 PF05198 Translation initiation factor IF-3, N-terminal domain KS4_RS13080 PF00707 Translation initiation factor IF-3, C-terminal domain KS4_RS13095 PF01569 PAP2 superfamily KS4_RS13105 PF00072 Response regulator receiver domain KS4_RS13115 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase KS4_RS13120 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KS4_RS13120 PF05221 S-adenosyl-L-homocysteine hydrolase KS4_RS13125 PF01209 ubiE/COQ5 methyltransferase family KS4_RS13140 PF03099 Biotin/lipoate A/B protein ligase family KS4_RS13145 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS13145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KS4_RS13155 PF00206 Lyase KS4_RS13155 PF10397 Adenylosuccinate lyase C-terminus KS4_RS13160 PF04542 Sigma-70 region 2 KS4_RS13160 PF08281 Sigma-70, region 4 KS4_RS13170 PF00753 Metallo-beta-lactamase superfamily KS4_RS13170 PF03772 Competence protein KS4_RS13170 PF13567 Domain of unknown function (DUF4131) KS4_RS13180 PF03793 PASTA domain KS4_RS13180 PF00069 Protein kinase domain KS4_RS13195 PF04073 Aminoacyl-tRNA editing domain KS4_RS13195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS4_RS13195 PF03129 Anticodon binding domain KS4_RS13210 PF13735 tRNA nucleotidyltransferase domain 2 putative KS4_RS13210 PF12627 Probable RNA and SrmB- binding site of polymerase A KS4_RS13210 PF01743 Poly A polymerase head domain KS4_RS13215 PF09335 SNARE associated Golgi protein KS4_RS13220 PF01168 Alanine racemase, N-terminal domain KS4_RS13235 PF17764 3′ DNA-binding domain (3′BD) KS4_RS13235 PF04851 Type III restriction enzyme, res subunit KS4_RS13235 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KS4_RS13235 PF00271 Helicase conserved C-terminal domain KS4_RS13235 PF18074 Primosomal protein N C-terminal domain KS4_RS13240 PF05190 MutS family domain IV KS4_RS13240 PF00488 MutS domain V KS4_RS13240 PF05192 MutS domain III KS4_RS13240 PF05188 MutS domain II KS4_RS13240 PF01624 MutS domain I KS4_RS13245 PF02391 MoaE protein KS4_RS13255 PF00730 HhH-GPD superfamily base excision DNA repair protein KS4_RS13255 PF00633 Helix-hairpin-helix motif KS4_RS13270 PF01118 Semialdehyde dehydrogenase, NAD binding domain KS4_RS13270 PF02774 Semialdehyde dehydrogenase, dimerisation domain KS4_RS13275 PF00011 Hsp20/alpha crystallin family KS4_RS13305 PF08534 Redoxin KS4_RS13310 PF12146 Serine aminopeptidase, S33 KS4_RS13315 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS13325 PF00248 Aldo/keto reductase family KS4_RS13345 PF00120 Glutamine synthetase, catalytic domain KS4_RS13345 PF18318 Glutamine synthetase C-terminal domain KS4_RS13345 PF12437 Glutamine synthetase type III N terminal KS4_RS13360 PF00490 Delta-aminolevulinic acid dehydratase KS4_RS13375 PF00196 Bacterial regulatory proteins, luxR family KS4_RS13375 PF00072 Response regulator receiver domain KS4_RS13380 PF00989 PAS fold KS4_RS13380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS13380 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS13390 PF04445 Putative SAM-dependent methyltransferase KS4_RS13405 PF02355 Protein export membrane protein KS4_RS13410 PF02699 Preprotein translocase subunit KS4_RS13415 PF01702 Queuine tRNA-ribosyltransferase KS4_RS13420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS13420 PF00672 HAMP domain KS4_RS13420 PF02743 Cache domain KS4_RS13430 PF00072 Response regulator receiver domain KS4_RS13430 PF00486 Transcriptional regulatory protein, C terminal KS4_RS13435 PF18719 ArlS sensor domain KS4_RS13435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS13435 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS13455 PF01066 CDP-alcohol phosphatidyltransferase KS4_RS13460 PF00248 Aldo/keto reductase family KS4_RS13465 PF03600 Citrate transporter KS4_RS13470 PF00293 NUDIX domain KS4_RS13485 PF00013 KH domain KS4_RS13485 PF01966 HD domain KS4_RS13485 PF12072 Domain of unknown function (DUF3552) KS4_RS13500 PF01255 Putative undecaprenyl diphosphate synthase KS4_RS13505 PF00709 Adenylosuccinate synthetase KS4_RS13520 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KS4_RS13520 PF02843 Phosphoribosylglycinamide synthetase, C domain KS4_RS13520 PF02844 Phosphoribosylglycinamide synthetase, N domain KS4_RS13545 PF03009 Glycerophosphoryl diester phosphodiesterase family KS4_RS13550 PF03009 Glycerophosphoryl diester phosphodiesterase family KS4_RS13555 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KS4_RS13555 PF01409 tRNA synthetases class II core domain (F) KS4_RS13560 PF01259 SAICAR synthetase KS4_RS13565 PF01545 Cation efflux family KS4_RS13565 PF16916 Dimerisation domain of Zinc Transporter KS4_RS13590 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS13590 PF08448 PAS fold KS4_RS13600 PF02684 Lipid-A-disaccharide synthetase KS4_RS13610 PF03144 Elongation factor Tu domain 2 KS4_RS13610 PF00009 Elongation factor Tu GTP binding domain KS4_RS13610 PF14492 Elongation Factor G, domain II KS4_RS13610 PF00679 Elongation factor G C-terminus KS4_RS13610 PF03764 Elongation factor G, domain IV KS4_RS13615 PF00535 Glycosyl transferase family 2 KS4_RS13625 PF00202 Aminotransferase class-III KS4_RS13640 PF00166 Chaperonin 10 Kd subunit KS4_RS13645 PF00118 TCP-1/cpn60 chaperonin family KS4_RS13700 PF01641 SelR domain KS4_RS13725 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KS4_RS13725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KS4_RS13740 PF13369 Transglutaminase-like superfamily KS4_RS13755 PF07478 D-ala D-ala ligase C-terminus KS4_RS13760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS13760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS13775 PF03952 Enolase, N-terminal domain KS4_RS13775 PF00113 Enolase, C-terminal TIM barrel domain KS4_RS13810 PF02502 Ribose/Galactose Isomerase KS4_RS13815 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KS4_RS13815 PF00056 lactate/malate dehydrogenase, NAD binding domain KS4_RS13855 PF00829 Ribosomal prokaryotic L21 protein KS4_RS13875 PF01261 Xylose isomerase-like TIM barrel KS4_RS13885 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS13885 PF09308 LuxQ, periplasmic KS4_RS13885 PF00072 Response regulator receiver domain KS4_RS13885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS13890 PF01618 MotA/TolQ/ExbB proton channel family KS4_RS13920 PF02580 D-Tyr-tRNA(Tyr) deacylase KS4_RS13930 PF02881 SRP54-type protein, helical bundle domain KS4_RS13930 PF00448 SRP54-type protein, GTPase domain KS4_RS13950 PF06968 Biotin and Thiamin Synthesis associated domain KS4_RS13950 PF04055 Radical SAM superfamily KS4_RS13970 PF02660 Glycerol-3-phosphate acyltransferase KS4_RS13990 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KS4_RS13990 PF01676 Metalloenzyme superfamily KS4_RS14000 PF01370 NAD dependent epimerase/dehydratase family KS4_RS14005 PF00574 Clp protease KS4_RS14015 PF17773 UPF0176 acylphosphatase like domain KS4_RS14015 PF00581 Rhodanese-like domain KS4_RS14070 PF00005 ABC transporter KS4_RS14070 PF08402 TOBE domain KS4_RS14075 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS14080 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS14085 PF00128 Alpha amylase, catalytic domain KS4_RS14085 PF16657 Maltogenic Amylase, C-terminal domain KS4_RS14085 PF02903 Alpha amylase, N-terminal ig-like domain KS4_RS14090 PF00356 Bacterial regulatory proteins, lacI family KS4_RS14105 PF01833 IPT/TIG domain KS4_RS14105 PF00686 Starch binding domain KS4_RS14105 PF00128 Alpha amylase, catalytic domain KS4_RS14110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KS4_RS14110 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS14115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KS4_RS14115 PF00364 Biotin-requiring enzyme KS4_RS14115 PF02817 e3 binding domain KS4_RS14120 PF16078 2-oxoglutarate dehydrogenase N-terminus KS4_RS14120 PF00676 Dehydrogenase E1 component KS4_RS14120 PF16870 2-oxoglutarate dehydrogenase C-terminal KS4_RS14120 PF02779 Transketolase, pyrimidine binding domain KS4_RS14125 PF01925 Sulfite exporter TauE/SafE KS4_RS14130 PF01435 Peptidase family M48 KS4_RS14145 PF08245 Mur ligase middle domain KS4_RS14145 PF02875 Mur ligase family, glutamate ligase domain KS4_RS14155 PF00437 Type II/IV secretion system protein KS4_RS14155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KS4_RS14160 PF00437 Type II/IV secretion system protein KS4_RS14180 PF00977 Histidine biosynthesis protein KS4_RS14215 PF00109 Beta-ketoacyl synthase, N-terminal domain KS4_RS14215 PF02801 Beta-ketoacyl synthase, C-terminal domain KS4_RS14225 PF02801 Beta-ketoacyl synthase, C-terminal domain KS4_RS14225 PF00109 Beta-ketoacyl synthase, N-terminal domain KS4_RS14230 PF02080 TrkA-C domain KS4_RS14230 PF03600 Citrate transporter KS4_RS14255 PF00482 Type II secretion system (T2SS), protein F KS4_RS14260 PF00437 Type II/IV secretion system protein KS4_RS14270 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KS4_RS14270 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KS4_RS14290 PF13614 AAA domain KS4_RS14295 PF01370 NAD dependent epimerase/dehydratase family KS4_RS14300 PF00953 Glycosyl transferase family 4 KS4_RS14310 PF03473 MOSC domain KS4_RS14310 PF03475 3-alpha domain KS4_RS14315 PF00318 Ribosomal protein S2 KS4_RS14320 PF00889 Elongation factor TS KS4_RS14340 PF01063 Amino-transferase class IV KS4_RS14345 PF01142 tRNA pseudouridine synthase D (TruD) KS4_RS14350 PF13649 Methyltransferase domain KS4_RS14365 PF08207 Elongation factor P (EF-P) KOW-like domain KS4_RS14365 PF01132 Elongation factor P (EF-P) OB domain KS4_RS14365 PF09285 Elongation factor P, C-terminal KS4_RS14385 PF01740 STAS domain KS4_RS14385 PF00916 Sulfate permease family KS4_RS14400 PF03129 Anticodon binding domain KS4_RS14400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS4_RS14415 PF01467 Cytidylyltransferase-like KS4_RS14415 PF00294 pfkB family carbohydrate kinase KS4_RS14425 PF01370 NAD dependent epimerase/dehydratase family KS4_RS14430 PF03023 Lipid II flippase MurJ KS4_RS14435 PF01370 NAD dependent epimerase/dehydratase family KS4_RS14445 PF00574 Clp protease KS4_RS14455 PF07963 Prokaryotic N-terminal methylation motif KS4_RS14465 PF00356 Bacterial regulatory proteins, lacI family KS4_RS14485 PF14537 Cytochrome c3 KS4_RS14485 PF00890 FAD binding domain KS4_RS14490 PF01061 ABC-2 type transporter KS4_RS14510 PF01699 Sodium/calcium exchanger protein KS4_RS14515 PF00155 Aminotransferase class I and II KS4_RS14515 PF00392 Bacterial regulatory proteins, gntR family KS4_RS14525 PF17864 RuvB AAA lid domain KS4_RS14525 PF05496 Holliday junction DNA helicase RuvB P-loop domain KS4_RS14525 PF05491 RuvB C-terminal winged helix domain KS4_RS14535 PF00266 Aminotransferase class-V KS4_RS14540 PF07536 HWE histidine kinase KS4_RS14540 PF13426 PAS domain KS4_RS14545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KS4_RS14545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KS4_RS14550 PF00437 Type II/IV secretion system protein KS4_RS14560 PF00156 Phosphoribosyl transferase domain KS4_RS14565 PF00106 short chain dehydrogenase KS4_RS14600 PF08281 Sigma-70, region 4 KS4_RS14600 PF04542 Sigma-70 region 2 KS4_RS14610 PF02028 BCCT, betaine/carnitine/choline family transporter KS4_RS14620 PF00378 Enoyl-CoA hydratase/isomerase KS4_RS14640 PF12833 Helix-turn-helix domain KS4_RS14645 PF08402 TOBE domain KS4_RS14645 PF00005 ABC transporter KS4_RS14650 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KS4_RS14650 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KS4_RS14665 PF00171 Aldehyde dehydrogenase family KS4_RS14670 PF04958 Arginine N-succinyltransferase beta subunit KS4_RS14695 PF00510 Cytochrome c oxidase subunit III KS4_RS14705 PF00510 Cytochrome c oxidase subunit III KS4_RS14710 PF00510 Cytochrome c oxidase subunit III KS4_RS14710 PF00115 Cytochrome C and Quinol oxidase polypeptide I KS4_RS14715 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KS4_RS14715 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KS4_RS14750 PF13247 4Fe-4S dicluster domain KS4_RS14750 PF00037 4Fe-4S binding domain KS4_RS14765 PF02021 Uncharacterised protein family UPF0102 KS4_RS14780 PF01488 Shikimate / quinate 5-dehydrogenase KS4_RS14780 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KS4_RS14780 PF08501 Shikimate dehydrogenase substrate binding domain KS4_RS14790 PF01202 Shikimate kinase KS4_RS14805 PF00012 Hsp70 protein KS4_RS14825 PF00860 Permease family KS4_RS14845 PF01026 TatD related DNase KS4_RS14875 PF13537 Glutamine amidotransferase domain KS4_RS14875 PF00733 Asparagine synthase KS4_RS14890 PF13188 PAS domain KS4_RS14890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS14890 PF00989 PAS fold KS4_RS14890 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS14890 PF13426 PAS domain KS4_RS14895 PF14698 Argininosuccinate lyase C-terminal KS4_RS14895 PF00206 Lyase KS4_RS14900 PF00291 Pyridoxal-phosphate dependent enzyme KS4_RS14915 PF16363 GDP-mannose 4,6 dehydratase KS4_RS14935 PF01329 Pterin 4 alpha carbinolamine dehydratase KS4_RS14945 PF05343 M42 glutamyl aminopeptidase KS4_RS14960 PF02321 Outer membrane efflux protein KS4_RS14970 PF00873 AcrB/AcrD/AcrF family KS4_RS14980 PF07670 Nucleoside recognition KS4_RS14985 PF07670 Nucleoside recognition KS4_RS14990 PF00072 Response regulator receiver domain KS4_RS14990 PF00196 Bacterial regulatory proteins, luxR family KS4_RS14995 PF16363 GDP-mannose 4,6 dehydratase KS4_RS15000 PF00483 Nucleotidyl transferase KS4_RS15010 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS15025 PF02743 Cache domain KS4_RS15025 PF00672 HAMP domain KS4_RS15025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS15030 PF07499 RuvA, C-terminal domain KS4_RS15030 PF01330 RuvA N terminal domain KS4_RS15040 PF01047 MarR family KS4_RS15045 PF00248 Aldo/keto reductase family KS4_RS15050 PF00692 dUTPase KS4_RS15060 PF13091 PLD-like domain KS4_RS15060 PF13396 Phospholipase_D-nuclease N-terminal KS4_RS15070 PF00485 Phosphoribulokinase / Uridine kinase family KS4_RS15075 PF12169 DNA polymerase III subunits gamma and tau domain III KS4_RS15080 PF01494 FAD binding domain KS4_RS15090 PF00175 Oxidoreductase NAD-binding domain KS4_RS15090 PF00970 Oxidoreductase FAD-binding domain KS4_RS15095 PF00107 Zinc-binding dehydrogenase KS4_RS15095 PF08240 Alcohol dehydrogenase GroES-like domain KS4_RS15100 PF01808 AICARFT/IMPCHase bienzyme KS4_RS15100 PF02142 MGS-like domain KS4_RS15105 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KS4_RS15105 PF01580 FtsK/SpoIIIE family KS4_RS15105 PF09397 Ftsk gamma domain KS4_RS15105 PF17854 FtsK alpha domain KS4_RS15145 PF00764 Arginosuccinate synthase KS4_RS15175 PF00072 Response regulator receiver domain KS4_RS15175 PF00486 Transcriptional regulatory protein, C terminal KS4_RS15185 PF13421 SPFH domain-Band 7 family KS4_RS15190 PF08668 HDOD domain KS4_RS15210 PF00924 Mechanosensitive ion channel KS4_RS15225 PF01555 DNA methylase KS4_RS15230 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS15230 PF00037 4Fe-4S binding domain KS4_RS15235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KS4_RS15235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS4_RS15260 PF01336 OB-fold nucleic acid binding domain KS4_RS15260 PF07733 Bacterial DNA polymerase III alpha NTPase domain KS4_RS15260 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KS4_RS15260 PF14579 Helix-hairpin-helix motif KS4_RS15260 PF02811 PHP domain KS4_RS15265 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS15270 PF07859 alpha/beta hydrolase fold KS4_RS15285 PF00375 Sodium:dicarboxylate symporter family KS4_RS15295 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KS4_RS15295 PF03900 Porphobilinogen deaminase, C-terminal domain KS4_RS15340 PF00121 Triosephosphate isomerase KS4_RS15350 PF03755 YicC-like family, N-terminal region KS4_RS15350 PF08340 Domain of unknown function (DUF1732) KS4_RS15370 PF00174 Oxidoreductase molybdopterin binding domain KS4_RS15375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS4_RS15375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS4_RS15380 PF01965 DJ-1/PfpI family KS4_RS15390 PF13419 Haloacid dehalogenase-like hydrolase KS4_RS15395 PF02075 Crossover junction endodeoxyribonuclease RuvC KS4_RS15400 PF00521 DNA gyrase/topoisomerase IV, subunit A KS4_RS15400 PF03989 DNA gyrase C-terminal domain, beta-propeller KS4_RS15410 PF00204 DNA gyrase B KS4_RS15410 PF01751 Toprim domain KS4_RS15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS15410 PF00986 DNA gyrase B subunit, carboxyl terminus KS4_RS15415 PF01966 HD domain KS4_RS15415 PF00072 Response regulator receiver domain KS4_RS15420 PF00072 Response regulator receiver domain KS4_RS15420 PF00486 Transcriptional regulatory protein, C terminal KS4_RS15425 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS15425 PF18698 Histidine kinase sensor domain KS4_RS15425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS15425 PF00989 PAS fold KS4_RS15425 PF00672 HAMP domain KS4_RS15435 PF03958 Bacterial type II/III secretion system short domain KS4_RS15435 PF00263 Bacterial type II and III secretion system protein KS4_RS15460 PF07963 Prokaryotic N-terminal methylation motif KS4_RS15460 PF08334 Type II secretion system (T2SS), protein G KS4_RS15465 PF00293 NUDIX domain KS4_RS15470 PF03144 Elongation factor Tu domain 2 KS4_RS15470 PF00009 Elongation factor Tu GTP binding domain KS4_RS15470 PF00679 Elongation factor G C-terminus KS4_RS15470 PF06421 GTP-binding protein LepA C-terminus KS4_RS15480 PF02600 Disulfide bond formation protein DsbB KS4_RS15490 PF00899 ThiF family KS4_RS15510 PF10755 Protein of unknown function (DUF2585) KS4_RS15525 PF00834 Ribulose-phosphate 3 epimerase family KS4_RS15530 PF00248 Aldo/keto reductase family KS4_RS15555 PF00162 Phosphoglycerate kinase KS4_RS15560 PF01571 Aminomethyltransferase folate-binding domain KS4_RS15565 PF00672 HAMP domain KS4_RS15565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS15585 PF01638 HxlR-like helix-turn-helix KS4_RS15590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KS4_RS15605 PF02638 Glycosyl hydrolase-like 10 KS4_RS15610 PF08486 Stage II sporulation protein KS4_RS15665 PF00356 Bacterial regulatory proteins, lacI family KS4_RS15670 PF00474 Sodium:solute symporter family KS4_RS15680 PF13580 SIS domain KS4_RS15690 PF01266 FAD dependent oxidoreductase KS4_RS15690 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KS4_RS15695 PF01227 GTP cyclohydrolase I KS4_RS15700 PF00392 Bacterial regulatory proteins, gntR family KS4_RS15705 PF03169 OPT oligopeptide transporter protein KS4_RS15720 PF00356 Bacterial regulatory proteins, lacI family KS4_RS15740 PF10458 Valyl tRNA synthetase tRNA binding arm KS4_RS15740 PF00133 tRNA synthetases class I (I, L, M and V) KS4_RS15740 PF08264 Anticodon-binding domain of tRNA KS4_RS15745 PF00857 Isochorismatase family KS4_RS15765 PF02978 Signal peptide binding domain KS4_RS15765 PF02881 SRP54-type protein, helical bundle domain KS4_RS15765 PF00448 SRP54-type protein, GTPase domain KS4_RS15780 PF07963 Prokaryotic N-terminal methylation motif KS4_RS15780 PF14245 Type IV pilin PilA KS4_RS15795 PF13393 Histidyl-tRNA synthetase KS4_RS15795 PF03129 Anticodon binding domain KS4_RS15805 PF00106 short chain dehydrogenase KS4_RS15830 PF00133 tRNA synthetases class I (I, L, M and V) KS4_RS15830 PF08264 Anticodon-binding domain of tRNA KS4_RS15830 PF06827 Zinc finger found in FPG and IleRS KS4_RS15840 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain KS4_RS15840 PF07228 Stage II sporulation protein E (SpoIIE) KS4_RS15845 PF00365 Phosphofructokinase KS4_RS15870 PF06463 Molybdenum Cofactor Synthesis C KS4_RS15870 PF04055 Radical SAM superfamily KS4_RS15875 PF01263 Aldose 1-epimerase KS4_RS15890 PF00005 ABC transporter KS4_RS15895 PF01145 SPFH domain / Band 7 family KS4_RS15915 PF00486 Transcriptional regulatory protein, C terminal KS4_RS15915 PF00072 Response regulator receiver domain KS4_RS15920 PF00989 PAS fold KS4_RS15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS15920 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS15925 PF00072 Response regulator receiver domain KS4_RS15925 PF00486 Transcriptional regulatory protein, C terminal KS4_RS15935 PF00330 Aconitase family (aconitate hydratase) KS4_RS15940 PF00881 Nitroreductase family KS4_RS15960 PF01725 Ham1 family KS4_RS15965 PF03065 Glycosyl hydrolase family 57 KS4_RS15965 PF09210 Domain of unknown function (DUF1957) KS4_RS15975 PF02875 Mur ligase family, glutamate ligase domain KS4_RS15975 PF08245 Mur ligase middle domain KS4_RS15975 PF01225 Mur ligase family, catalytic domain KS4_RS15990 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KS4_RS15990 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KS4_RS16000 PF00501 AMP-binding enzyme KS4_RS16000 PF13193 AMP-binding enzyme C-terminal domain KS4_RS16035 PF00793 DAHP synthetase I family KS4_RS16050 PF00106 short chain dehydrogenase KS4_RS16065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS4_RS16065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS4_RS16070 PF06167 Glucose-regulated metallo-peptidase M90 KS4_RS16080 PF01614 Bacterial transcriptional regulator KS4_RS16080 PF09339 IclR helix-turn-helix domain KS4_RS16085 PF00884 Sulfatase KS4_RS16090 PF00083 Sugar (and other) transporter KS4_RS16100 PF00158 Sigma-54 interaction domain KS4_RS16100 PF00072 Response regulator receiver domain KS4_RS16100 PF02954 Bacterial regulatory protein, Fis family KS4_RS16105 PF13426 PAS domain KS4_RS16105 PF13188 PAS domain KS4_RS16105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS16115 PF01300 Telomere recombination KS4_RS16115 PF03481 Putative GTP-binding controlling metal-binding KS4_RS16125 PF00211 Adenylate and Guanylate cyclase catalytic domain KS4_RS16125 PF00072 Response regulator receiver domain KS4_RS16130 PF11967 Recombination protein O N terminal KS4_RS16130 PF02565 Recombination protein O C terminal KS4_RS16150 PF02082 Transcriptional regulator KS4_RS16155 PF00266 Aminotransferase class-V KS4_RS16160 PF01592 NifU-like N terminal domain KS4_RS16165 PF01521 Iron-sulphur cluster biosynthesis KS4_RS16170 PF01479 S4 domain KS4_RS16170 PF01728 FtsJ-like methyltransferase KS4_RS16180 PF01791 DeoC/LacD family aldolase KS4_RS16185 PF00300 Histidine phosphatase superfamily (branch 1) KS4_RS16205 PF02381 MraZ protein, putative antitoxin-like KS4_RS16210 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS16215 PF01790 Prolipoprotein diacylglyceryl transferase KS4_RS16220 PF08206 Ribonuclease B OB domain KS4_RS16220 PF17876 Cold shock domain KS4_RS16220 PF00773 RNB domain KS4_RS16220 PF00575 S1 RNA binding domain KS4_RS16240 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KS4_RS16240 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KS4_RS16245 PF08279 HTH domain KS4_RS16245 PF03099 Biotin/lipoate A/B protein ligase family KS4_RS16245 PF02237 Biotin protein ligase C terminal domain KS4_RS16250 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit KS4_RS16250 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit KS4_RS16255 PF00364 Biotin-requiring enzyme KS4_RS16265 PF01039 Carboxyl transferase domain KS4_RS16275 PF01642 Methylmalonyl-CoA mutase KS4_RS16275 PF02310 B12 binding domain KS4_RS16285 PF02310 B12 binding domain KS4_RS16285 PF01642 Methylmalonyl-CoA mutase KS4_RS16315 PF01554 MatE KS4_RS16325 PF00795 Carbon-nitrogen hydrolase KS4_RS16335 PF04371 Porphyromonas-type peptidyl-arginine deiminase KS4_RS16350 PF00809 Pterin binding enzyme KS4_RS16390 PF14716 Helix-hairpin-helix domain KS4_RS16390 PF02811 PHP domain KS4_RS16390 PF14791 DNA polymerase beta thumb KS4_RS16395 PF02347 Glycine cleavage system P-protein KS4_RS16400 PF00156 Phosphoribosyl transferase domain KS4_RS16400 PF05139 Erythromycin esterase KS4_RS16415 PF00581 Rhodanese-like domain KS4_RS16415 PF17773 UPF0176 acylphosphatase like domain KS4_RS16435 PF13614 AAA domain KS4_RS16440 PF02874 ATP synthase alpha/beta family, beta-barrel domain KS4_RS16440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS4_RS16450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS4_RS16450 PF00205 Thiamine pyrophosphate enzyme, central domain KS4_RS16450 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KS4_RS16455 PF00953 Glycosyl transferase family 4 KS4_RS16455 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KS4_RS16465 PF00884 Sulfatase KS4_RS16475 PF02350 UDP-N-acetylglucosamine 2-epimerase KS4_RS16480 PF13472 GDSL-like Lipase/Acylhydrolase family KS4_RS16480 PF02348 Cytidylyltransferase KS4_RS16545 PF02899 Phage integrase, N-terminal SAM-like domain KS4_RS16545 PF00589 Phage integrase family KS4_RS16560 PF02397 Bacterial sugar transferase KS4_RS16570 PF00202 Aminotransferase class-III KS4_RS16575 PF04958 Arginine N-succinyltransferase beta subunit KS4_RS16580 PF04996 Succinylarginine dihydrolase KS4_RS16620 PF06508 Queuosine biosynthesis protein QueC KS4_RS16625 PF03781 Sulfatase-modifying factor enzyme 1 KS4_RS16625 PF12867 DinB superfamily KS4_RS16650 PF02779 Transketolase, pyrimidine binding domain KS4_RS16650 PF02780 Transketolase, C-terminal domain KS4_RS16660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS4_RS16660 PF00672 HAMP domain KS4_RS16665 PF03702 Anhydro-N-acetylmuramic acid kinase KS4_RS16670 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS16675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KS4_RS16675 PF01872 RibD C-terminal domain KS4_RS16685 PF00106 short chain dehydrogenase KS4_RS16690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KS4_RS16690 PF12833 Helix-turn-helix domain KS4_RS16690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KS4_RS16690 PF02805 Metal binding domain of Ada KS4_RS16755 PF00009 Elongation factor Tu GTP binding domain KS4_RS16755 PF03144 Elongation factor Tu domain 2 KS4_RS16755 PF00679 Elongation factor G C-terminus KS4_RS16755 PF14492 Elongation Factor G, domain II KS4_RS16760 PF01740 STAS domain KS4_RS16790 PF02875 Mur ligase family, glutamate ligase domain KS4_RS16790 PF01225 Mur ligase family, catalytic domain KS4_RS16790 PF08245 Mur ligase middle domain KS4_RS16810 PF02875 Mur ligase family, glutamate ligase domain KS4_RS16810 PF08245 Mur ligase middle domain KS4_RS16810 PF01225 Mur ligase family, catalytic domain KS4_RS16815 PF02837 Glycosyl hydrolases family 2, sugar binding domain KS4_RS16815 PF16355 Domain of unknown function (DUF4982) KS4_RS16815 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KS4_RS16815 PF00703 Glycosyl hydrolases family 2 KS4_RS16820 PF02621 Menaquinone biosynthesis KS4_RS16830 PF00486 Transcriptional regulatory protein, C terminal KS4_RS16830 PF00072 Response regulator receiver domain KS4_RS16840 PF13419 Haloacid dehalogenase-like hydrolase KS4_RS16845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KS4_RS16845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KS4_RS16845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KS4_RS16845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KS4_RS16880 PF00158 Sigma-54 interaction domain KS4_RS16880 PF02954 Bacterial regulatory protein, Fis family KS4_RS16880 PF01590 GAF domain KS4_RS16885 PF00883 Cytosol aminopeptidase family, catalytic domain KS4_RS16885 PF02789 Cytosol aminopeptidase family, N-terminal domain KS4_RS16905 PF01584 CheW-like domain KS4_RS16910 PF01739 CheR methyltransferase, SAM binding domain KS4_RS16910 PF03705 CheR methyltransferase, all-alpha domain KS4_RS16915 PF00072 Response regulator receiver domain KS4_RS16915 PF01627 Hpt domain KS4_RS16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS16915 PF01584 CheW-like domain KS4_RS16915 PF02895 Signal transducing histidine kinase, homodimeric domain KS4_RS16920 PF13690 Chemotaxis phosphatase CheX KS4_RS16925 PF00072 Response regulator receiver domain KS4_RS16935 PF01339 CheB methylesterase KS4_RS16935 PF00072 Response regulator receiver domain KS4_RS16955 PF03306 Alpha-acetolactate decarboxylase KS4_RS16960 PF04403 Paraquat-inducible protein A KS4_RS16965 PF03306 Alpha-acetolactate decarboxylase KS4_RS16980 PF17762 HTH domain found in ParB protein KS4_RS16980 PF02195 ParB-like nuclease domain KS4_RS16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS4_RS16985 PF00512 His Kinase A (phospho-acceptor) domain KS4_RS16985 PF08448 PAS fold KS4_RS16985 PF00072 Response regulator receiver domain KS4_RS16985 PF13426 PAS domain KS4_RS16990 PF14864 Alkyl sulfatase C-terminal KS4_RS16990 PF00753 Metallo-beta-lactamase superfamily KS4_RS16990 PF14863 Alkyl sulfatase dimerisation KS4_RS17020 PF01212 Beta-eliminating lyase KS4_RS17025 PF01373 Glycosyl hydrolase family 14 KS4_RS17025 PF03423 Carbohydrate binding domain (family 25) KS4_RS17025 PF00128 Alpha amylase, catalytic domain KS4_RS17030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KS4_RS17035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KS4_RS17035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KS4_RS17035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KS4_RS17040 PF00534 Glycosyl transferases group 1 KS4_RS17040 PF13439 Glycosyltransferase Family 4 KS4_RS17045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KS4_RS17055 PF13419 Haloacid dehalogenase-like hydrolase KS4_RS17065 PF00528 Binding-protein-dependent transport system inner membrane component KS4_RS17100 PF03459 TOBE domain KS4_RS17100 PF00005 ABC transporter KS4_RS17130 PF01910 Thiamine-binding protein KS4_RS17145 PF03462 PCRF domain KS4_RS17145 PF00472 RF-1 domain KS4_RS17165 PF00226 DnaJ domain KS4_RS17165 PF01556 DnaJ C terminal domain KS4_RS17170 PF02861 Clp amino terminal domain, pathogenicity island component KS4_RS17170 PF00004 ATPase family associated with various cellular activities (AAA) KS4_RS17170 PF10431 C-terminal, D2-small domain, of ClpB protein KS4_RS17170 PF07724 AAA domain (Cdc48 subfamily) KS4_RS17170 PF17871 AAA lid domain KS4_RS17190 PF13614 AAA domain KS4_RS17195 PF02545 Maf-like protein KS4_RS17200 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KS4_RS17205 PF13426 PAS domain KS4_RS17205 PF07536 HWE histidine kinase KS4_RS17205 PF13581 Histidine kinase-like ATPase domain KS4_RS17215 PF00180 Isocitrate/isopropylmalate dehydrogenase KS4_RS17220 PF04966 Carbohydrate-selective porin, OprB family KS4_RS17225 PF00440 Bacterial regulatory proteins, tetR family KS4_RS17265 PF00571 CBS domain KS4_RS17270 PF03477 ATP cone domain KS4_RS17275 PF13277 YmdB-like protein KS4_RS17285 PF00990 Diguanylate cyclase, GGDEF domain KS4_RS17295 PF00085 Thioredoxin KS4_RS17300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KS4_RS17300 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS4_RS17325 PF02254 TrkA-N domain KS4_RS17325 PF00999 Sodium/hydrogen exchanger family KS4_RS17335 PF03992 Antibiotic biosynthesis monooxygenase KS4_RS17340 PF00365 Phosphofructokinase KS4_RS17345 PF01925 Sulfite exporter TauE/SafE KS4_RS17375 PF02661 Fic/DOC family KS4_RS17375 PF13784 Fic/DOC family N-terminal KS4_RS17395 PF00132 Bacterial transferase hexapeptide (six repeats) KS4_RS17395 PF12804 MobA-like NTP transferase domain