locus-tag	class	description
PGJ_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PGJ_RS00020	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
PGJ_RS00025	COG1408	metallophosphoesterase
PGJ_RS00045	COG0542	response to heat
PGJ_RS00050	COG1472	Belongs to the glycosyl hydrolase 3 family
PGJ_RS00055	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PGJ_RS00070	COG4191	Histidine kinase
PGJ_RS00090	COG0659	secondary active sulfate transmembrane transporter activity
PGJ_RS00095	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
PGJ_RS00100	COG0179	Fumarylacetoacetate (FAA) hydrolase
PGJ_RS00115	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
PGJ_RS00130	COG0295	cytidine deaminase activity
PGJ_RS00155	COG3118	belongs to the thioredoxin family
PGJ_RS00165	COG0335	large ribosomal subunit rRNA binding
PGJ_RS00180	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PGJ_RS00185	COG3525	Glycosyl hydrolase, family 20, catalytic domain
PGJ_RS00190	COG0326	Molecular chaperone. Has ATPase activity
PGJ_RS00195	COG4589	Belongs to the CDS family
PGJ_RS00200	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PGJ_RS00205	COG0012	GTP binding
PGJ_RS00220	COG3852	Histidine kinase
PGJ_RS00225	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
PGJ_RS00225	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
PGJ_RS00240	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PGJ_RS00245	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PGJ_RS00260	COG1649	PFAM Uncharacterised BCR, COG1649
PGJ_RS00265	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PGJ_RS00290	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
PGJ_RS00290	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PGJ_RS00295	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PGJ_RS00300	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
PGJ_RS00300	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PGJ_RS00305	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PGJ_RS00310	COG0284	orotidine-5'-phosphate decarboxylase activity
PGJ_RS00315	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PGJ_RS00320	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
PGJ_RS00325	COG1388	LysM domain
PGJ_RS00325	COG1705	Flagellar rod assembly protein muramidase FlgJ
PGJ_RS00360	COG1760	l-serine dehydratase
PGJ_RS00375	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
PGJ_RS00375	COG0517	IMP dehydrogenase activity
PGJ_RS00390	COG0783	Belongs to the Dps family
PGJ_RS00420	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PGJ_RS00425	COG0217	transcriptional regulatory protein
PGJ_RS00430	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PGJ_RS00430	COG0072	phenylalanine-tRNA ligase activity
PGJ_RS00480	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PGJ_RS00480	COG0551	DNA topoisomerase type I activity
PGJ_RS00490	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PGJ_RS00495	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
PGJ_RS00500	COG1216	Glycosyl transferase, family 2
PGJ_RS00510	COG0438	transferase activity, transferring glycosyl groups
PGJ_RS00530	COG1045	serine acetyltransferase
PGJ_RS00540	COG1215	transferase activity, transferring glycosyl groups
PGJ_RS00560	COG0776	regulation of translation
PGJ_RS00570	COG1739	Uncharacterized protein family UPF0029
PGJ_RS00585	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
PGJ_RS00595	COG0438	transferase activity, transferring glycosyl groups
PGJ_RS00600	COG0588	phosphoglycerate mutase activity
PGJ_RS00615	COG2239	Acts as a magnesium transporter
PGJ_RS00620	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
PGJ_RS00630	COG2195	Cleaves the N-terminal amino acid of tripeptides
PGJ_RS00635	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PGJ_RS00640	COG1388	LysM domain
PGJ_RS00640	COG3942	CHAP domain
PGJ_RS00650	COG1475	DNA binding
PGJ_RS00655	COG1192	Involved in chromosome partitioning
PGJ_RS00665	COG2957	Belongs to the agmatine deiminase family
PGJ_RS00695	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PGJ_RS00700	COG0552	protein localization to endoplasmic reticulum
PGJ_RS00710	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
PGJ_RS00715	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PGJ_RS00715	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PGJ_RS00720	COG2890	protein-(glutamine-N5) methyltransferase activity
PGJ_RS00725	COG2137	regulation of response to DNA damage stimulus
PGJ_RS00730	COG1040	competence protein
PGJ_RS00735	COG3590	peptidase
PGJ_RS00760	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
PGJ_RS00765	COG0193	aminoacyl-tRNA hydrolase activity
PGJ_RS00770	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
PGJ_RS00775	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PGJ_RS00775	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PGJ_RS00795	COG0446	pyridine nucleotide-disulphide oxidoreductase
PGJ_RS00855	COG4206	TonB-dependent receptor
PGJ_RS00855	COG1629	transport
PGJ_RS00875	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PGJ_RS00885	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
PGJ_RS00895	COG1592	Rubrerythrin
PGJ_RS00900	COG0612	Peptidase, M16
PGJ_RS00905	COG3152	Membrane
PGJ_RS00910	COG0084	hydrolase, TatD family'
PGJ_RS00915	COG0594	ribonuclease P activity
PGJ_RS00935	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PGJ_RS00940	COG2116	formate transmembrane transporter activity
PGJ_RS00945	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
PGJ_RS01015	COG2095	MarC family integral membrane protein
PGJ_RS01025	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PGJ_RS01050	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PGJ_RS01055	COG3876	Protein conserved in bacteria
PGJ_RS01085	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PGJ_RS01090	COG1011	Hydrolase
PGJ_RS01100	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PGJ_RS01145	COG0779	Required for maturation of 30S ribosomal subunits
PGJ_RS01150	COG0195	Participates in both transcription termination and antitermination
PGJ_RS01155	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PGJ_RS01155	COG3266	domain, Protein
PGJ_RS01165	COG0719	Fe-S assembly protein
PGJ_RS01170	COG0396	ATPase activity
PGJ_RS01175	COG0719	Fe-S assembly protein
PGJ_RS01180	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PGJ_RS01190	COG0018	arginyl-trna synthetase
PGJ_RS01195	COG0482	sulfurtransferase activity
PGJ_RS01200	COG0708	Exodeoxyribonuclease III
PGJ_RS01205	COG0583	DNA-binding transcription factor activity
PGJ_RS01210	COG0629	single-stranded DNA binding
PGJ_RS01215	COG1253	flavin adenine dinucleotide binding
PGJ_RS01240	COG2877	3-deoxy-8-phosphooctulonate synthase activity
PGJ_RS01245	COG1027	Aspartate ammonia-lyase
PGJ_RS01250	COG0248	Ppx GppA phosphatase
PGJ_RS01260	COG1940	carbohydrate kinase activity
PGJ_RS01280	COG4974	Belongs to the 'phage' integrase family
PGJ_RS01285	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
PGJ_RS01295	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
PGJ_RS01300	COG0590	tRNA wobble adenosine to inosine editing
PGJ_RS01315	COG1058	Belongs to the CinA family
PGJ_RS01315	COG1546	Belongs to the CinA family
PGJ_RS01320	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PGJ_RS01330	COG0268	Binds directly to 16S ribosomal RNA
PGJ_RS01340	COG0557	exoribonuclease II activity
PGJ_RS01350	COG1132	(ABC) transporter
PGJ_RS01360	COG0259	pyridoxamine-phosphate oxidase activity
PGJ_RS01390	COG2217	Heavy metal translocating P-type atpase
PGJ_RS01390	COG2608	mercury ion transmembrane transporter activity
PGJ_RS01395	COG2217	Heavy metal translocating P-type atpase
PGJ_RS01400	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PGJ_RS01405	COG0534	Mate efflux family protein
PGJ_RS01410	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PGJ_RS01415	COG1674	ftsk spoiiie
PGJ_RS01430	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
PGJ_RS01485	COG0500	methyltransferase
PGJ_RS01490	COG2830	Protein of unknown function (DUF452)
PGJ_RS01495	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PGJ_RS01520	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
PGJ_RS01545	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PGJ_RS01550	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PGJ_RS01550	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PGJ_RS01575	COG1136	(ABC) transporter
PGJ_RS01580	COG1136	(ABC) transporter
PGJ_RS01580	COG0577	efflux transmembrane transporter activity
PGJ_RS01585	COG0577	efflux transmembrane transporter activity
PGJ_RS01585	COG1136	(ABC) transporter
PGJ_RS01640	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
PGJ_RS01645	COG0126	phosphoglycerate kinase activity
PGJ_RS01655	COG1131	(ABC) transporter
PGJ_RS01665	COG0438	transferase activity, transferring glycosyl groups
PGJ_RS01685	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
PGJ_RS01690	COG0009	L-threonylcarbamoyladenylate synthase
PGJ_RS01700	COG1136	(ABC) transporter
PGJ_RS01705	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
PGJ_RS01710	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PGJ_RS01725	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
PGJ_RS01730	COG0187	DNA topoisomerase II activity
PGJ_RS01735	COG3956	TIGRFAM MazG family protein
PGJ_RS01745	COG0564	pseudouridine synthase activity
PGJ_RS01780	COG1053	succinate dehydrogenase
PGJ_RS01790	COG0346	lactoylglutathione lyase activity
PGJ_RS01795	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
PGJ_RS01810	COG0511	ligase activity, forming carbon-carbon bonds
PGJ_RS01820	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
PGJ_RS01835	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PGJ_RS01845	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
PGJ_RS01845	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
PGJ_RS01860	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PGJ_RS01865	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PGJ_RS01870	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PGJ_RS01875	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
PGJ_RS01885	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PGJ_RS01890	COG1480	7TM receptor with intracellular HD hydrolase
PGJ_RS01900	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PGJ_RS01905	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PGJ_RS01910	COG0671	phosphoesterase, PA-phosphatase related
PGJ_RS01950	COG0714	Associated with various cellular activities
PGJ_RS01955	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
PGJ_RS01965	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
PGJ_RS02025	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PGJ_RS02030	COG0730	response to heat
PGJ_RS02050	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PGJ_RS02065	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PGJ_RS02085	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PGJ_RS02105	COG1429	ligase activity, forming nitrogen-metal bonds
PGJ_RS02110	COG4771	TonB-dependent receptor
PGJ_RS02135	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
PGJ_RS02140	COG3022	response to hydroperoxide
PGJ_RS02150	COG0826	peptidase U32
PGJ_RS02155	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PGJ_RS02160	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PGJ_RS02165	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PGJ_RS02170	COG1968	undecaprenyl-diphosphatase activity
PGJ_RS02190	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
PGJ_RS02200	COG0784	Response regulator, receiver
PGJ_RS02200	COG5002	protein histidine kinase activity
PGJ_RS02200	COG2205	protein histidine kinase activity
PGJ_RS02205	COG2197	response regulator
PGJ_RS02215	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
PGJ_RS02230	COG2957	Belongs to the agmatine deiminase family
PGJ_RS02235	COG2027	D-alanyl-D-alanine carboxypeptidase
PGJ_RS02250	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PGJ_RS02255	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
PGJ_RS02255	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
PGJ_RS02285	COG0569	domain protein
PGJ_RS02285	COG2985	domain, Protein
PGJ_RS02325	COG3033	Beta-eliminating lyase
PGJ_RS02335	COG0138	bifunctional purine biosynthesis protein purh
PGJ_RS02355	COG0768	penicillin binding
PGJ_RS02360	COG0772	Belongs to the SEDS family
PGJ_RS02425	COG1194	a g-specific adenine glycosylase
PGJ_RS02445	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
PGJ_RS02455	COG0166	Belongs to the GPI family
PGJ_RS02465	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PGJ_RS02470	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PGJ_RS02475	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
PGJ_RS02480	COG0116	Belongs to the methyltransferase superfamily
PGJ_RS02485	COG1506	peptidase
PGJ_RS02485	COG0823	Involved in the tonB-independent uptake of proteins
PGJ_RS02500	COG5433	transposase activity
PGJ_RS02505	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PGJ_RS02530	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PGJ_RS02535	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PGJ_RS02550	COG1597	lipid kinase activity
PGJ_RS02555	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
PGJ_RS02560	COG0438	transferase activity, transferring glycosyl groups
PGJ_RS02570	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
PGJ_RS02570	COG0321	lipoyl(octanoyl) transferase activity
PGJ_RS02575	COG0812	UDP-N-acetylmuramate dehydrogenase activity
PGJ_RS02585	COG1620	l-lactate permease
PGJ_RS02590	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PGJ_RS02615	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
PGJ_RS02630	COG1970	mechanosensitive ion channel activity
PGJ_RS02645	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PGJ_RS02645	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PGJ_RS02655	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
PGJ_RS02660	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
PGJ_RS02665	COG2759	Belongs to the formate--tetrahydrofolate ligase family
PGJ_RS02690	COG1047	Peptidyl-prolyl cis-trans
PGJ_RS02695	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PGJ_RS02725	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
PGJ_RS02735	COG0357	Ribosomal RNA small subunit methyltransferase G
PGJ_RS02740	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PGJ_RS02745	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PGJ_RS02745	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PGJ_RS02790	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
PGJ_RS02790	COG1918	ferrous iron import across plasma membrane
PGJ_RS02805	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PGJ_RS02810	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PGJ_RS02815	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
PGJ_RS02825	COG0363	glucosamine-6-phosphate deaminase activity
PGJ_RS02830	COG3591	Belongs to the peptidase S1B family
PGJ_RS02840	COG1193	negative regulation of DNA recombination
PGJ_RS02855	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PGJ_RS02860	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
PGJ_RS02870	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PGJ_RS02875	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PGJ_RS02885	COG1012	belongs to the aldehyde dehydrogenase family
PGJ_RS02935	COG1328	CTP reductase activity
PGJ_RS02940	COG0602	queuosine metabolic process
PGJ_RS02950	COG1530	ribonuclease E activity
PGJ_RS02955	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PGJ_RS02965	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PGJ_RS02995	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PGJ_RS03000	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PGJ_RS03015	COG0305	Participates in initiation and elongation during chromosome replication
PGJ_RS03020	COG0481	GTPase activity
PGJ_RS03030	COG1309	transcriptional regulator
PGJ_RS03040	COG0564	pseudouridine synthase activity
PGJ_RS03045	COG2197	response regulator
PGJ_RS03055	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PGJ_RS03060	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
PGJ_RS03090	COG0488	(ABC) transporter
PGJ_RS03095	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
PGJ_RS03110	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PGJ_RS03140	COG3341	Caulimovirus viroplasmin
PGJ_RS03140	COG0328	RNA-DNA hybrid ribonuclease activity
PGJ_RS03150	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
PGJ_RS03220	COG1137	ATPase activity
PGJ_RS03225	COG1129	ABC transporter
PGJ_RS03230	COG4974	Belongs to the 'phage' integrase family
PGJ_RS03260	COG2972	Histidine kinase
PGJ_RS03265	COG3279	Response regulator of the LytR AlgR family
PGJ_RS03300	COG2856	Zn peptidase
PGJ_RS03315	COG4974	Belongs to the 'phage' integrase family
PGJ_RS03320	COG0443	Heat shock 70 kDa protein
PGJ_RS03330	COG4974	Belongs to the 'phage' integrase family
PGJ_RS03400	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PGJ_RS03430	COG1696	Membrane protein involved in D-alanine export
PGJ_RS03460	COG1132	(ABC) transporter
PGJ_RS03480	COG0793	Belongs to the peptidase S41A family
PGJ_RS03490	COG5433	transposase activity
PGJ_RS03505	COG0167	dihydroorotate dehydrogenase activity
PGJ_RS03515	COG1607	acyl-coa hydrolase
PGJ_RS03520	COG3246	L-lysine catabolic process to acetate
PGJ_RS03525	COG0604	alcohol dehydrogenase
PGJ_RS03545	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PGJ_RS03550	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PGJ_RS03560	COG1960	acyl-CoA dehydrogenase activity
PGJ_RS03565	COG2086	electron transfer activity
PGJ_RS03570	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
PGJ_RS03575	COG1024	Enoyl-CoA hydratase
PGJ_RS03585	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PGJ_RS03590	COG0280	phosphate acetyltransferase
PGJ_RS03600	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PGJ_RS03610	COG1242	4 iron, 4 sulfur cluster binding
PGJ_RS03635	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PGJ_RS03640	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PGJ_RS03650	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PGJ_RS03670	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
PGJ_RS03680	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PGJ_RS03690	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
PGJ_RS03695	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
PGJ_RS03700	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
PGJ_RS03705	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
PGJ_RS03710	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
PGJ_RS03715	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PGJ_RS03720	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PGJ_RS03725	COG0534	Mate efflux family protein
PGJ_RS03730	COG0542	response to heat
PGJ_RS03740	COG0017	Asparaginyl-tRNA synthetase
PGJ_RS03745	COG1187	pseudouridine synthase activity
PGJ_RS03755	COG2096	Adenosyltransferase
PGJ_RS03765	COG2233	PERMEase
PGJ_RS03770	COG1522	sequence-specific DNA binding
PGJ_RS03775	COG1570	exodeoxyribonuclease VII activity
PGJ_RS03790	COG0525	valine-tRNA ligase activity
PGJ_RS03805	COG0492	ferredoxin-NADP+ reductase activity
PGJ_RS03810	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PGJ_RS03840	COG0438	transferase activity, transferring glycosyl groups
PGJ_RS03860	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PGJ_RS03865	COG1022	Amp-dependent synthetase and ligase
PGJ_RS03885	COG1979	alcohol dehydrogenase
PGJ_RS03905	COG1187	pseudouridine synthase activity
PGJ_RS03915	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
PGJ_RS03920	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PGJ_RS03925	COG1492	cobalamin metabolic process
PGJ_RS03930	COG2096	Adenosyltransferase
PGJ_RS03935	COG1797	cobyrinic acid a,c-diamide synthase activity
PGJ_RS03970	COG0560	Phosphoserine phosphatase
PGJ_RS03975	COG0247	lactate metabolic process
PGJ_RS03980	COG1139	Iron-sulfur cluster binding protein
PGJ_RS03985	COG1556	Lactate utilization protein
PGJ_RS04000	COG0602	queuosine metabolic process
PGJ_RS04005	COG0720	synthase
PGJ_RS04015	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PGJ_RS04020	COG0789	Transcriptional regulator
PGJ_RS04040	COG0860	N-Acetylmuramoyl-L-alanine amidase
PGJ_RS04050	COG5433	transposase activity
PGJ_RS04060	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
PGJ_RS04080	COG2194	sulfuric ester hydrolase activity
PGJ_RS04095	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PGJ_RS04105	COG1127	ABC transporter
PGJ_RS04110	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
PGJ_RS04125	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PGJ_RS04130	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PGJ_RS04155	COG0574	Belongs to the PEP-utilizing enzyme family
PGJ_RS04155	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PGJ_RS04165	COG0427	acetyl-CoA hydrolase
PGJ_RS04170	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PGJ_RS04175	COG1131	(ABC) transporter
PGJ_RS04190	COG1725	Transcriptional regulator
PGJ_RS04250	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PGJ_RS04255	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PGJ_RS04260	COG0291	Belongs to the bacterial ribosomal protein bL35 family
PGJ_RS04265	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PGJ_RS04300	COG0729	surface antigen
PGJ_RS04305	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PGJ_RS04310	COG2226	methyltransferase
PGJ_RS04315	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
PGJ_RS04320	COG1702	phosphate starvation-inducible protein PhoH
PGJ_RS04330	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PGJ_RS04355	COG0688	phosphatidylethanolamine metabolic process
PGJ_RS04360	COG1183	phosphatidylcholine synthase activity
PGJ_RS04370	COG0442	prolyl-tRNA aminoacylation
PGJ_RS04380	COG0220	tRNA (guanine-N7-)-methyltransferase activity
PGJ_RS04385	COG0489	protein tyrosine kinase activity
PGJ_RS04390	COG1295	ribonuclease BN
PGJ_RS04390	COG1959	2 iron, 2 sulfur cluster binding
PGJ_RS04395	COG0196	riboflavin kinase activity
PGJ_RS04415	COG0756	dUTP diphosphatase activity
PGJ_RS04420	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
PGJ_RS04425	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PGJ_RS04430	COG0509	glycine decarboxylation via glycine cleavage system
PGJ_RS04450	COG4152	abc transporter atp-binding protein
PGJ_RS04455	COG1668	transmembrane transport
PGJ_RS04465	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
PGJ_RS04475	COG2252	PERMEase
PGJ_RS04480	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
PGJ_RS04485	COG1032	radical SAM domain protein
PGJ_RS04490	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PGJ_RS04515	COG2204	response regulator
PGJ_RS04520	COG0802	atpase or kinase
PGJ_RS04530	COG1435	thymidine kinase activity
PGJ_RS04535	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
PGJ_RS04540	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PGJ_RS04545	COG4591	ABC-type transport system involved in lipoprotein release permease component
PGJ_RS04550	COG0463	Glycosyl transferase, family 2
PGJ_RS04555	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
PGJ_RS04565	COG2246	polysaccharide biosynthetic process
PGJ_RS04595	COG3681	Belongs to the UPF0597 family
PGJ_RS04640	COG3537	Alpha-1,2-mannosidase
PGJ_RS04650	COG1271	oxidase subunit
PGJ_RS04655	COG1294	oxidase, subunit
PGJ_RS04660	COG1752	Esterase of the alpha-beta hydrolase superfamily
PGJ_RS04665	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
PGJ_RS04670	COG3250	beta-galactosidase activity
PGJ_RS04680	COG2003	Belongs to the UPF0758 family
PGJ_RS04685	COG1151	hydroxylamine reductase activity
PGJ_RS04690	COG1785	Belongs to the alkaline phosphatase family
PGJ_RS04695	COG0006	proline dipeptidase activity
PGJ_RS04705	COG2877	3-deoxy-8-phosphooctulonate synthase activity
PGJ_RS04725	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PGJ_RS04730	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
PGJ_RS04740	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PGJ_RS04750	COG4974	Belongs to the 'phage' integrase family
PGJ_RS04760	COG1910	domain protein
PGJ_RS04795	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
PGJ_RS04825	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
PGJ_RS04830	COG1396	sequence-specific DNA binding
PGJ_RS04875	COG4974	Belongs to the 'phage' integrase family
PGJ_RS04905	COG0632	four-way junction helicase activity
PGJ_RS04915	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PGJ_RS04920	COG0673	inositol 2-dehydrogenase activity
PGJ_RS04925	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PGJ_RS04930	COG0426	domain, Protein
PGJ_RS04935	COG0363	glucosamine-6-phosphate deaminase activity
PGJ_RS04940	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PGJ_RS04945	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
PGJ_RS04945	COG0617	tRNA 3'-terminal CCA addition
PGJ_RS04945	COG0517	IMP dehydrogenase activity
PGJ_RS04950	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
PGJ_RS04960	COG0495	leucyl-tRNA aminoacylation
PGJ_RS04965	COG0670	Belongs to the BI1 family
PGJ_RS04970	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
PGJ_RS04975	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
PGJ_RS04985	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
PGJ_RS04990	COG0563	adenylate kinase activity
PGJ_RS04995	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PGJ_RS05025	COG0084	hydrolase, TatD family'
PGJ_RS05035	COG0811	peptide transport
PGJ_RS05055	COG1214	PFAM Peptidase M22, glycoprotease
PGJ_RS05060	COG2086	electron transfer activity
PGJ_RS05065	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
PGJ_RS05070	COG1960	acyl-CoA dehydrogenase activity
PGJ_RS05095	COG1640	4-alpha-glucanotransferase
PGJ_RS05100	COG1185	polyribonucleotide nucleotidyltransferase activity
PGJ_RS05105	COG0544	peptidyl-prolyl cis-trans isomerase activity
PGJ_RS05155	COG0101	tRNA pseudouridine synthase activity
PGJ_RS05165	COG0826	peptidase U32
PGJ_RS05170	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PGJ_RS05180	COG1216	Glycosyl transferase, family 2
PGJ_RS05190	COG2204	response regulator
PGJ_RS05195	COG4191	Histidine kinase
PGJ_RS05205	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PGJ_RS05215	COG1234	tRNA 3'-trailer cleavage
PGJ_RS05230	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PGJ_RS05235	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PGJ_RS05260	COG0564	pseudouridine synthase activity
PGJ_RS05265	COG1181	Belongs to the D-alanine--D-alanine ligase family
PGJ_RS05280	COG1011	Hydrolase
PGJ_RS05285	COG1506	peptidase
PGJ_RS05285	COG0823	Involved in the tonB-independent uptake of proteins
PGJ_RS05290	COG0791	NLP P60 protein
PGJ_RS05295	COG0745	RESPONSE REGULATOR receiver
PGJ_RS05305	COG3142	Participates in the control of copper homeostasis
PGJ_RS05320	COG0512	Glutamine amidotransferase of anthranilate synthase
PGJ_RS05335	COG0545	Peptidyl-prolyl cis-trans isomerase
PGJ_RS05340	COG0545	Peptidyl-prolyl cis-trans isomerase
PGJ_RS05350	COG4771	TonB-dependent receptor
PGJ_RS05360	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
PGJ_RS05370	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
PGJ_RS05375	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
PGJ_RS05380	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
PGJ_RS05410	COG2885	chlorophyll binding
PGJ_RS05415	COG2885	chlorophyll binding
PGJ_RS05430	COG0427	acetyl-CoA hydrolase
PGJ_RS05435	COG1454	alcohol dehydrogenase
PGJ_RS05440	COG1012	belongs to the aldehyde dehydrogenase family
PGJ_RS05450	COG1136	(ABC) transporter
PGJ_RS05495	COG4221	oxidoreductase activity
PGJ_RS05510	COG1120	ATPase activity
PGJ_RS05525	COG4822	anaerobic cobalamin biosynthetic process
PGJ_RS05530	COG4771	TonB-dependent receptor
PGJ_RS05535	COG0582	viral genome integration into host DNA
PGJ_RS05585	COG1309	transcriptional regulator
PGJ_RS05590	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PGJ_RS05720	COG0358	DNA primase activity
PGJ_RS05785	COG3250	beta-galactosidase activity
PGJ_RS05790	COG0673	inositol 2-dehydrogenase activity
PGJ_RS05810	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
PGJ_RS05815	COG0424	maF-like protein
PGJ_RS05820	COG0230	Belongs to the bacterial ribosomal protein bL34 family
PGJ_RS05830	COG0560	Phosphoserine phosphatase
PGJ_RS05830	COG3830	Belongs to the UPF0237 family
PGJ_RS05865	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PGJ_RS05870	COG1120	ATPase activity
PGJ_RS05900	COG0616	signal peptide processing
PGJ_RS05905	COG1663	tetraacyldisaccharide 4'-kinase activity
PGJ_RS05910	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
PGJ_RS05915	COG0534	Mate efflux family protein
PGJ_RS05920	COG2264	protein methyltransferase activity
PGJ_RS05925	COG0693	protein deglycase activity
PGJ_RS05940	COG0811	peptide transport
PGJ_RS05945	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
PGJ_RS05950	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PGJ_RS05960	COG0724	RNA recognition motif
PGJ_RS05970	COG0302	gtp cyclohydrolase
PGJ_RS05980	COG0149	triose-phosphate isomerase activity
PGJ_RS05995	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
PGJ_RS06000	COG3634	alkyl hydroperoxide reductase activity
PGJ_RS06015	COG1217	gtp-binding protein TYPA
PGJ_RS06050	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
PGJ_RS06055	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
PGJ_RS06065	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PGJ_RS06065	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PGJ_RS06075	COG0359	binds to the 23S rRNA
PGJ_RS06080	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PGJ_RS06085	COG0360	Binds together with S18 to 16S ribosomal RNA
PGJ_RS06090	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PGJ_RS06095	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PGJ_RS06100	COG0254	rRNA binding
PGJ_RS06105	COG0518	GMP synthase (glutamine-hydrolyzing) activity
PGJ_RS06105	COG0519	Catalyzes the synthesis of GMP from XMP
PGJ_RS06110	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
PGJ_RS06115	COG2860	membrane
PGJ_RS06125	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PGJ_RS06130	COG0849	cell division
PGJ_RS06140	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PGJ_RS06145	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PGJ_RS06150	COG0772	Belongs to the SEDS family
PGJ_RS06155	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PGJ_RS06160	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PGJ_RS06165	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PGJ_RS06170	COG0768	penicillin binding
PGJ_RS06180	COG0275	rRNA processing
PGJ_RS06190	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PGJ_RS06200	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PGJ_RS06210	COG0569	domain protein
PGJ_RS06210	COG2985	domain, Protein
PGJ_RS06215	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PGJ_RS06220	COG0402	S-adenosylhomocysteine deaminase activity
PGJ_RS06225	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
PGJ_RS06285	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
PGJ_RS06310	COG2195	Cleaves the N-terminal amino acid of tripeptides
PGJ_RS06355	COG2720	vancomycin resistance protein
PGJ_RS06360	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PGJ_RS06360	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
PGJ_RS06365	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
PGJ_RS06370	COG0505	Belongs to the CarA family
PGJ_RS06380	COG0706	membrane insertase activity
PGJ_RS06385	COG0504	CTP synthase activity
PGJ_RS06390	COG0517	IMP dehydrogenase activity
PGJ_RS06390	COG0516	GMP reductase activity
PGJ_RS06395	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PGJ_RS06400	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PGJ_RS06405	COG0459	protein refolding
PGJ_RS06420	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
PGJ_RS06435	COG0653	protein targeting
PGJ_RS06445	COG0194	GDP metabolic process
PGJ_RS06450	COG2715	membrane protein required for spore maturation
PGJ_RS06455	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PGJ_RS06460	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
PGJ_RS06475	COG2957	Belongs to the agmatine deiminase family
PGJ_RS06480	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
PGJ_RS06485	COG1506	peptidase
PGJ_RS06485	COG0823	Involved in the tonB-independent uptake of proteins
PGJ_RS06490	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
PGJ_RS06500	COG0343	queuine tRNA-ribosyltransferase activity
PGJ_RS06505	COG0582	viral genome integration into host DNA
PGJ_RS06510	COG4974	Belongs to the 'phage' integrase family
PGJ_RS06565	COG1854	S-ribosylhomocysteine lyase activity
PGJ_RS06570	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PGJ_RS06580	COG3591	Belongs to the peptidase S1B family
PGJ_RS06595	COG2255	four-way junction helicase activity
PGJ_RS06600	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PGJ_RS06605	COG1862	Preprotein translocase
PGJ_RS06610	COG4856	YbbR-like protein
PGJ_RS06615	COG0237	dephospho-CoA kinase activity
PGJ_RS06625	COG0156	8-amino-7-oxononanoate synthase activity
PGJ_RS06640	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
PGJ_RS06650	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PGJ_RS06670	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PGJ_RS06685	COG1482	cell wall glycoprotein biosynthetic process
PGJ_RS06695	COG0735	belongs to the Fur family
PGJ_RS06700	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PGJ_RS06735	COG1253	flavin adenine dinucleotide binding
PGJ_RS06755	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
PGJ_RS06760	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PGJ_RS06765	COG2195	Cleaves the N-terminal amino acid of tripeptides
PGJ_RS06795	COG3206	protein involved in exopolysaccharide biosynthesis
PGJ_RS06795	COG0489	protein tyrosine kinase activity
PGJ_RS06800	COG4464	protein tyrosine phosphatase activity
PGJ_RS06810	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PGJ_RS06815	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
PGJ_RS06815	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PGJ_RS06820	COG1013	pyruvate-flavodoxin oxidoreductase activity
PGJ_RS06825	COG0674	pyruvate-flavodoxin oxidoreductase activity
PGJ_RS06825	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
PGJ_RS06920	COG0740	serine-type endopeptidase activity
PGJ_RS06925	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PGJ_RS06930	COG0514	ATP-dependent DNA helicase (RecQ)
PGJ_RS06935	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PGJ_RS06950	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PGJ_RS06955	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PGJ_RS06985	COG1418	mRNA catabolic process
PGJ_RS06990	COG1774	PSP1 C-terminal conserved region
PGJ_RS07000	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PGJ_RS07010	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PGJ_RS07015	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PGJ_RS07020	COG0085	RNA polymerase activity
PGJ_RS07025	COG0222	ribosome binding
PGJ_RS07030	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PGJ_RS07035	COG0081	regulation of translation
PGJ_RS07040	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PGJ_RS07060	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PGJ_RS07075	COG4974	Belongs to the 'phage' integrase family
PGJ_RS07080	COG0828	Belongs to the bacterial ribosomal protein bS21 family
PGJ_RS07090	COG0750	zinc metalloprotease
PGJ_RS07095	COG3263	regulation of cellular component size
PGJ_RS07100	COG0556	nucleotide-excision repair
PGJ_RS07105	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PGJ_RS07110	COG0052	Belongs to the universal ribosomal protein uS2 family
PGJ_RS07115	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
PGJ_RS07130	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PGJ_RS07150	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PGJ_RS07170	COG1704	LemA family
PGJ_RS07175	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
PGJ_RS07180	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
PGJ_RS07185	COG0540	Belongs to the ATCase OTCase family
PGJ_RS07215	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PGJ_RS07220	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
PGJ_RS07225	COG0218	Necessary for normal cell division and for the maintenance of normal septation
PGJ_RS07240	COG0626	cystathionine gamma-synthase activity
PGJ_RS07260	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PGJ_RS07265	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
PGJ_RS07270	COG0463	Glycosyl transferase, family 2
PGJ_RS07300	COG1228	amidohydrolase
PGJ_RS07315	COG3404	Formiminotransferase-cyclodeaminase
PGJ_RS07320	COG2986	histidine ammonia-lyase
PGJ_RS07335	COG1703	isobutyryl-CoA mutase activity
PGJ_RS07355	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PGJ_RS07360	COG0211	Belongs to the bacterial ribosomal protein bL27 family
PGJ_RS07365	COG0261	This protein binds to 23S rRNA in the presence of protein L20
PGJ_RS07380	COG0463	Glycosyl transferase, family 2
PGJ_RS07390	COG1477	protein flavinylation
PGJ_RS07395	COG4657	Part of a membrane complex involved in electron transport
PGJ_RS07400	COG4660	Part of a membrane complex involved in electron transport
PGJ_RS07405	COG4659	FMN binding
PGJ_RS07410	COG4658	electron transport chain
PGJ_RS07415	COG4656	Part of a membrane complex involved in electron transport
PGJ_RS07420	COG2878	Part of a membrane complex involved in electron transport
PGJ_RS07420	COG1148	4fe-4S ferredoxin, iron-sulfur binding domain protein
PGJ_RS07465	COG2059	Chromate
PGJ_RS07485	COG1262	PFAM Formylglycine-generating sulfatase enzyme
PGJ_RS07505	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PGJ_RS07510	COG1136	(ABC) transporter
PGJ_RS07515	COG0577	efflux transmembrane transporter activity
PGJ_RS07525	COG0280	phosphate acetyltransferase
PGJ_RS07525	COG0281	malic enzyme
PGJ_RS07535	COG0698	ribose 5-phosphate isomerase
PGJ_RS07540	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PGJ_RS07560	COG0709	Synthesizes selenophosphate from selenide and ATP
PGJ_RS07565	COG0823	Involved in the tonB-independent uptake of proteins
PGJ_RS07565	COG1506	peptidase
PGJ_RS07570	COG3588	fructose-bisphosphate aldolase
PGJ_RS07580	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PGJ_RS07590	COG1121	(ABC) transporter
PGJ_RS07600	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PGJ_RS07605	COG0571	ribonuclease III activity
PGJ_RS07610	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PGJ_RS07615	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PGJ_RS07620	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PGJ_RS07630	COG0606	chelatase, subunit chli
PGJ_RS07650	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PGJ_RS07655	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PGJ_RS07660	COG0671	phosphoesterase, PA-phosphatase related
PGJ_RS07665	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PGJ_RS07670	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PGJ_RS07675	COG0484	heat shock protein binding
PGJ_RS07680	COG2151	metal-sulfur cluster biosynthetic enzyme
PGJ_RS07690	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
PGJ_RS07695	COG0156	8-amino-7-oxononanoate synthase activity
PGJ_RS07755	COG0339	signal peptide processing
PGJ_RS07770	COG0475	glutathione-regulated potassium exporter activity
PGJ_RS07775	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
PGJ_RS07780	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PGJ_RS07780	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PGJ_RS07830	COG1269	ATP hydrolysis coupled proton transport
PGJ_RS07870	COG0358	DNA primase activity
PGJ_RS07875	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
PGJ_RS07880	COG2249	NAD(P)H dehydrogenase (quinone) activity
PGJ_RS07885	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PGJ_RS07900	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
PGJ_RS07905	COG3005	denitrification pathway
PGJ_RS07920	COG0148	phosphopyruvate hydratase activity
PGJ_RS07940	COG1022	Amp-dependent synthetase and ligase
PGJ_RS07945	COG0514	ATP-dependent DNA helicase (RecQ)
PGJ_RS07960	COG0297	glycogen (starch) synthase activity
PGJ_RS07970	COG2211	Major facilitator Superfamily
PGJ_RS07975	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PGJ_RS08005	COG0251	oxidation-reduction process
PGJ_RS08010	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PGJ_RS08015	COG0497	DNA recombination
PGJ_RS08030	COG2176	DNA-directed DNA polymerase activity
PGJ_RS08030	COG5002	protein histidine kinase activity
PGJ_RS08040	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PGJ_RS08060	COG0716	FMN binding
PGJ_RS08065	COG1929	Belongs to the glycerate kinase type-1 family
PGJ_RS08090	COG1755	Isoprenylcysteine carboxyl methyltransferase
PGJ_RS08105	COG0792	nuclease activity
PGJ_RS08120	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
PGJ_RS08125	COG0215	cysteine-tRNA ligase activity
PGJ_RS08130	COG1752	Esterase of the alpha-beta hydrolase superfamily
PGJ_RS08135	COG0463	Glycosyl transferase, family 2
PGJ_RS08135	COG1216	Glycosyl transferase, family 2
PGJ_RS08155	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
PGJ_RS08160	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PGJ_RS08165	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
PGJ_RS08215	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PGJ_RS08235	COG1162	GTPase activity
PGJ_RS08240	COG0233	cytoplasmic translational termination
PGJ_RS08245	COG0528	UMP kinase activity
PGJ_RS08255	COG0203	ribosomal protein L17
PGJ_RS08260	COG0202	RNA polymerase activity
PGJ_RS08265	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PGJ_RS08270	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PGJ_RS08275	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PGJ_RS08280	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PGJ_RS08290	COG0201	protein transport
PGJ_RS08295	COG0200	Binds to the 23S rRNA
PGJ_RS08300	COG1841	ribosomal large subunit assembly
PGJ_RS08305	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PGJ_RS08310	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PGJ_RS08315	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PGJ_RS08320	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PGJ_RS08325	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PGJ_RS08330	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PGJ_RS08335	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PGJ_RS08340	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PGJ_RS08345	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PGJ_RS08350	COG0255	Belongs to the universal ribosomal protein uL29 family
PGJ_RS08355	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PGJ_RS08360	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PGJ_RS08365	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PGJ_RS08370	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PGJ_RS08375	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PGJ_RS08380	COG0089	rRNA binding
PGJ_RS08385	COG0088	Forms part of the polypeptide exit tunnel
PGJ_RS08390	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PGJ_RS08395	COG0051	transcription antitermination factor activity, RNA binding
PGJ_RS08400	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PGJ_RS08405	COG0049	tRNA binding
PGJ_RS08410	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PGJ_RS08430	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
PGJ_RS08440	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PGJ_RS08475	COG0628	permease
PGJ_RS08480	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PGJ_RS08505	COG0427	acetyl-CoA hydrolase
PGJ_RS08515	COG0267	Belongs to the bacterial ribosomal protein bL33 family
PGJ_RS08520	COG0227	Belongs to the bacterial ribosomal protein bL28 family
PGJ_RS08545	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PGJ_RS08555	COG0668	transmembrane transport
PGJ_RS08630	COG0445	tRNA wobble uridine modification
PGJ_RS08635	COG0322	excinuclease ABC activity
PGJ_RS08640	COG1490	D-aminoacyl-tRNA deacylase activity
PGJ_RS08655	COG0142	geranyltranstransferase activity
PGJ_RS08675	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
PGJ_RS08680	COG0232	Belongs to the dGTPase family. Type 2 subfamily
PGJ_RS08685	COG2855	membrane
PGJ_RS08695	COG4771	TonB-dependent receptor
PGJ_RS08700	COG1381	Involved in DNA repair and RecF pathway recombination
PGJ_RS08705	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PGJ_RS08710	COG3119	arylsulfatase activity
PGJ_RS08720	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PGJ_RS08770	COG0156	8-amino-7-oxononanoate synthase activity
PGJ_RS08780	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PGJ_RS08785	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PGJ_RS08785	COG0551	DNA topoisomerase type I activity
PGJ_RS09030	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
PGJ_RS09040	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PGJ_RS09045	COG0406	alpha-ribazole phosphatase activity
PGJ_RS09055	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PGJ_RS09080	COG0493	'glutamate synthase
PGJ_RS09085	COG0543	2 iron, 2 sulfur cluster binding
PGJ_RS09090	COG0336	Belongs to the RNA methyltransferase TrmD family
PGJ_RS09095	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PGJ_RS09105	COG3023	N-Acetylmuramoyl-L-alanine amidase
PGJ_RS09130	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PGJ_RS09135	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PGJ_RS09145	COG0037	tRNA processing
PGJ_RS09150	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PGJ_RS09170	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PGJ_RS09185	COG0167	dihydroorotate dehydrogenase activity
PGJ_RS09220	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PGJ_RS09225	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PGJ_RS09230	COG0124	histidyl-tRNA synthetase
PGJ_RS09240	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PGJ_RS09250	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
PGJ_RS09260	COG0300	oxidoreductase activity
PGJ_RS09275	COG1074	ATP-dependent DNA helicase activity
PGJ_RS09310	COG2957	Belongs to the agmatine deiminase family
PGJ_RS09325	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PGJ_RS09330	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PGJ_RS09335	COG3104	oligopeptide transport
PGJ_RS09345	COG0180	Tryptophanyl-tRNA synthetase
PGJ_RS09355	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PGJ_RS09400	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PGJ_RS09405	COG0513	Belongs to the DEAD box helicase family
PGJ_RS09445	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PGJ_RS09450	COG2022	thiamine diphosphate biosynthetic process
PGJ_RS09455	COG0352	thiamine-phosphate diphosphorylase activity
PGJ_RS09460	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
PGJ_RS09495	COG0228	four-way junction DNA binding
PGJ_RS09510	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
PGJ_RS09515	COG0252	asparaginase activity
PGJ_RS09540	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PGJ_RS09605	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PGJ_RS09610	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PGJ_RS09615	COG1160	GTP binding
PGJ_RS09625	COG0726	polysaccharide deacetylase
PGJ_RS09635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PGJ_RS09635	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
PGJ_RS09640	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PGJ_RS09645	COG2233	PERMEase
PGJ_RS09695	COG2166	iron-sulfur cluster assembly
PGJ_RS09700	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
PGJ_RS09710	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PGJ_RS09715	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
PGJ_RS09725	COG0423	glycine-tRNA ligase activity
PGJ_RS09760	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PGJ_RS09795	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PGJ_RS09800	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PGJ_RS09805	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PGJ_RS09815	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PGJ_RS09830	COG1575	Belongs to the MenA family. Type 1 subfamily
PGJ_RS09835	COG0019	diaminopimelate decarboxylase activity
PGJ_RS09840	COG0527	aspartate kinase activity
PGJ_RS09845	COG2884	Cell division ATP-binding protein ftsE
PGJ_RS09850	COG0739	heme binding
PGJ_RS09875	COG2957	Belongs to the agmatine deiminase family
PGJ_RS09880	COG0488	(ABC) transporter
PGJ_RS09890	COG0242	peptide deformylase activity
PGJ_RS09895	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PGJ_RS09905	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
PGJ_RS09910	COG0488	(ABC) transporter
PGJ_RS09975	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PGJ_RS09980	COG0569	domain protein
PGJ_RS09995	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine