PGJ_RS00115	PWY-7560	methylerythritol phosphate pathway II
PGJ_RS00130	PWY-6556	pyrimidine ribonucleosides salvage II
PGJ_RS00130	PWY-7181	pyrimidine deoxyribonucleosides degradation
PGJ_RS00130	PWY-7193	pyrimidine ribonucleosides salvage I
PGJ_RS00130	PWY-7199	pyrimidine deoxyribonucleosides salvage
PGJ_RS00180	PWY-1622	formaldehyde assimilation I (serine pathway)
PGJ_RS00180	PWY-181	photorespiration
PGJ_RS00180	PWY-2161	folate polyglutamylation
PGJ_RS00180	PWY-2201	folate transformations I
PGJ_RS00180	PWY-3661	glycine betaine degradation I
PGJ_RS00180	PWY-3661-1	glycine betaine degradation II (mammalian)
PGJ_RS00180	PWY-3841	folate transformations II
PGJ_RS00180	PWY-5497	purine nucleobases degradation II (anaerobic)
PGJ_RS00185	PWY-6902	chitin degradation II
PGJ_RS00195	PWY-5667	CDP-diacylglycerol biosynthesis I
PGJ_RS00195	PWY-5981	CDP-diacylglycerol biosynthesis III
PGJ_RS00240	PWY-5381	pyridine nucleotide cycling (plants)
PGJ_RS00245	PWY-5381	pyridine nucleotide cycling (plants)
PGJ_RS00245	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PGJ_RS00290	PWY-6938	NADH repair
PGJ_RS00300	PWY-2201	folate transformations I
PGJ_RS00300	PWY-5497	purine nucleobases degradation II (anaerobic)
PGJ_RS00300	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PGJ_RS00300	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PGJ_RS00300	PWY-5989	stearate biosynthesis II (bacteria and plants)
PGJ_RS00300	PWY-5994	palmitate biosynthesis I (animals and fungi)
PGJ_RS00300	PWY-6113	superpathway of mycolate biosynthesis
PGJ_RS00300	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PGJ_RS00300	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PGJ_RS00300	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PGJ_RS00300	PWY-7663	gondoate biosynthesis (anaerobic)
PGJ_RS00300	PWY-7664	oleate biosynthesis IV (anaerobic)
PGJ_RS00300	PWYG-321	mycolate biosynthesis
PGJ_RS00310	PWY-5686	UMP biosynthesis
PGJ_RS00365	PWY-6527	stachyose degradation
PGJ_RS00490	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PGJ_RS00490	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PGJ_RS00490	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PGJ_RS00520	PWY-4981	L-proline biosynthesis II (from arginine)
PGJ_RS00530	PWY-6936	seleno-amino acid biosynthesis
PGJ_RS00530	PWY-7274	D-cycloserine biosynthesis
PGJ_RS00545	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
PGJ_RS00545	PWY-622	starch biosynthesis
PGJ_RS00550	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
PGJ_RS00600	PWY-1622	formaldehyde assimilation I (serine pathway)
PGJ_RS00600	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS00635	PWY-4381	fatty acid biosynthesis initiation I
PGJ_RS00635	PWY-6799	fatty acid biosynthesis (plant mitochondria)
PGJ_RS00635	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PGJ_RS00665	PWY-43	putrescine biosynthesis II
PGJ_RS00705	PWY-6562	norspermidine biosynthesis
PGJ_RS00715	PWY-5525	D-glucuronate degradation I
PGJ_RS00750	PWY-1042	glycolysis IV (plant cytosol)
PGJ_RS00750	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PGJ_RS00750	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS00750	PWY-7385	1,3-propanediol biosynthesis (engineered)
PGJ_RS00765	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
PGJ_RS00920	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PGJ_RS00920	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PGJ_RS00945	PWY-2201	folate transformations I
PGJ_RS00945	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PGJ_RS00950	PWY-5194	siroheme biosynthesis
PGJ_RS00950	PWY-5441	S-methyl-L-methionine cycle
PGJ_RS00950	PWY-702	L-methionine biosynthesis II
PGJ_RS00950	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PGJ_RS00965	PWY-2201	folate transformations I
PGJ_RS00965	PWY-3841	folate transformations II
PGJ_RS00965	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PGJ_RS00970	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PGJ_RS01030	PWY-4981	L-proline biosynthesis II (from arginine)
PGJ_RS01050	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PGJ_RS01050	PWY-5723	Rubisco shunt
PGJ_RS01100	PWY-2201	folate transformations I
PGJ_RS01220	PWY-6012	acyl carrier protein metabolism I
PGJ_RS01220	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
PGJ_RS01240	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PGJ_RS01240	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PGJ_RS01245	PWY-5392	reductive TCA cycle II
PGJ_RS01245	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PGJ_RS01245	PWY-5690	TCA cycle II (plants and fungi)
PGJ_RS01245	PWY-5913	TCA cycle VI (obligate autotrophs)
PGJ_RS01245	PWY-6728	methylaspartate cycle
PGJ_RS01245	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PGJ_RS01245	PWY-7254	TCA cycle VII (acetate-producers)
PGJ_RS01245	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PGJ_RS01285	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PGJ_RS01285	PWY-6416	quinate degradation II
PGJ_RS01285	PWY-6707	gallate biosynthesis
PGJ_RS01320	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
PGJ_RS01320	PWY-5368	dimorphecolate biosynthesis
PGJ_RS01320	PWY-5995	linoleate biosynthesis I (plants)
PGJ_RS01320	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
PGJ_RS01320	PWY-6803	phosphatidylcholine acyl editing
PGJ_RS01320	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
PGJ_RS01320	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
PGJ_RS01320	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
PGJ_RS01320	PWY-7470	phosphatidylcholine biosynthesis VII
PGJ_RS01320	PWY-7618	ricinoleate biosynthesis
PGJ_RS01360	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
PGJ_RS01360	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PGJ_RS01430	PWY-3821	galactose degradation III
PGJ_RS01430	PWY-6317	galactose degradation I (Leloir pathway)
PGJ_RS01430	PWY-6527	stachyose degradation
PGJ_RS01435	PWY-6317	galactose degradation I (Leloir pathway)
PGJ_RS01485	PWY-2201	folate transformations I
PGJ_RS01485	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PGJ_RS01520	PWY-6454	vancomycin resistance I
PGJ_RS01520	PWY-6455	vancomycin resistance II
PGJ_RS01545	PWY-5743	3-hydroxypropanoate cycle
PGJ_RS01545	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PGJ_RS01545	PWY-6728	methylaspartate cycle
PGJ_RS01545	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PGJ_RS01640	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PGJ_RS01640	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PGJ_RS01645	PWY-1042	glycolysis IV (plant cytosol)
PGJ_RS01645	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS01645	PWY-6886	1-butanol autotrophic biosynthesis
PGJ_RS01645	PWY-6901	superpathway of glucose and xylose degradation
PGJ_RS01645	PWY-7003	glycerol degradation to butanol
PGJ_RS01660	PWY-5941	glycogen degradation II (eukaryotic)
PGJ_RS01660	PWY-6724	starch degradation II
PGJ_RS01660	PWY-6737	starch degradation V
PGJ_RS01660	PWY-7238	sucrose biosynthesis II
PGJ_RS01725	PWY-7533	gliotoxin biosynthesis
PGJ_RS01780	PWY-3781	aerobic respiration I (cytochrome c)
PGJ_RS01780	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PGJ_RS01780	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PGJ_RS01780	PWY-5690	TCA cycle II (plants and fungi)
PGJ_RS01780	PWY-6728	methylaspartate cycle
PGJ_RS01780	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PGJ_RS01780	PWY-7254	TCA cycle VII (acetate-producers)
PGJ_RS01780	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PGJ_RS01785	PWY-3781	aerobic respiration I (cytochrome c)
PGJ_RS01785	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PGJ_RS01785	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PGJ_RS01785	PWY-5690	TCA cycle II (plants and fungi)
PGJ_RS01785	PWY-6728	methylaspartate cycle
PGJ_RS01785	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PGJ_RS01785	PWY-7254	TCA cycle VII (acetate-producers)
PGJ_RS01785	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PGJ_RS01790	PWY-5741	ethylmalonyl-CoA pathway
PGJ_RS01790	PWY-5743	3-hydroxypropanoate cycle
PGJ_RS01790	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PGJ_RS01790	PWY-6728	methylaspartate cycle
PGJ_RS01790	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PGJ_RS01795	PWY-4381	fatty acid biosynthesis initiation I
PGJ_RS01795	PWY-5743	3-hydroxypropanoate cycle
PGJ_RS01795	PWY-5744	glyoxylate assimilation
PGJ_RS01795	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PGJ_RS01795	PWY-6679	jadomycin biosynthesis
PGJ_RS01795	PWY-6722	candicidin biosynthesis
PGJ_RS01795	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PGJ_RS01800	PWY-6339	syringate degradation
PGJ_RS01815	PWY-6339	syringate degradation
PGJ_RS01835	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
PGJ_RS01875	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PGJ_RS01875	PWY-5723	Rubisco shunt
PGJ_RS01885	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PGJ_RS01900	PWY-6614	tetrahydrofolate biosynthesis
PGJ_RS01955	PWY-5316	nicotine biosynthesis
PGJ_RS01955	PWY-7342	superpathway of nicotine biosynthesis
PGJ_RS01960	PWY-5316	nicotine biosynthesis
PGJ_RS01960	PWY-5381	pyridine nucleotide cycling (plants)
PGJ_RS01960	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PGJ_RS01960	PWY-7342	superpathway of nicotine biosynthesis
PGJ_RS01965	PWY-5316	nicotine biosynthesis
PGJ_RS01965	PWY-7342	superpathway of nicotine biosynthesis
PGJ_RS02050	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PGJ_RS02055	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
PGJ_RS02065	PWY-3221	dTDP-L-rhamnose biosynthesis II
PGJ_RS02065	PWY-6808	dTDP-D-forosamine biosynthesis
PGJ_RS02065	PWY-6942	dTDP-D-desosamine biosynthesis
PGJ_RS02065	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PGJ_RS02065	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PGJ_RS02065	PWY-6974	dTDP-L-olivose biosynthesis
PGJ_RS02065	PWY-6976	dTDP-L-mycarose biosynthesis
PGJ_RS02065	PWY-7104	dTDP-L-megosamine biosynthesis
PGJ_RS02065	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PGJ_RS02065	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PGJ_RS02065	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PGJ_RS02065	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PGJ_RS02065	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PGJ_RS02065	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PGJ_RS02065	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PGJ_RS02065	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PGJ_RS02065	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
PGJ_RS02065	PWY-7688	PGJ_RS02065
PGJ_RS02080	PWY-3221	dTDP-L-rhamnose biosynthesis II
PGJ_RS02080	PWY-6808	dTDP-D-forosamine biosynthesis
PGJ_RS02080	PWY-6942	dTDP-D-desosamine biosynthesis
PGJ_RS02080	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PGJ_RS02080	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PGJ_RS02080	PWY-6974	dTDP-L-olivose biosynthesis
PGJ_RS02080	PWY-6976	dTDP-L-mycarose biosynthesis
PGJ_RS02080	PWY-7104	dTDP-L-megosamine biosynthesis
PGJ_RS02080	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PGJ_RS02080	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PGJ_RS02080	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PGJ_RS02080	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PGJ_RS02080	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PGJ_RS02080	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PGJ_RS02080	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PGJ_RS02080	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PGJ_RS02080	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
PGJ_RS02080	PWY-7688	PGJ_RS02080
PGJ_RS02135	PWY-6854	ethylene biosynthesis III (microbes)
PGJ_RS02155	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PGJ_RS02155	PWY-6148	tetrahydromethanopterin biosynthesis
PGJ_RS02155	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PGJ_RS02155	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PGJ_RS02160	PWY-6700	queuosine biosynthesis
PGJ_RS02170	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
PGJ_RS02190	PWY-7560	methylerythritol phosphate pathway II
PGJ_RS02215	PWY-6167	flavin biosynthesis II (archaea)
PGJ_RS02215	PWY-6168	flavin biosynthesis III (fungi)
PGJ_RS02230	PWY-43	putrescine biosynthesis II
PGJ_RS02235	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PGJ_RS02235	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PGJ_RS02255	PWY-5392	reductive TCA cycle II
PGJ_RS02255	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PGJ_RS02255	PWY-5690	TCA cycle II (plants and fungi)
PGJ_RS02255	PWY-5913	TCA cycle VI (obligate autotrophs)
PGJ_RS02255	PWY-6728	methylaspartate cycle
PGJ_RS02255	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PGJ_RS02255	PWY-7254	TCA cycle VII (acetate-producers)
PGJ_RS02255	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PGJ_RS02265	PWY-723	alkylnitronates degradation
PGJ_RS02335	PWY-6123	inosine-5'-phosphate biosynthesis I
PGJ_RS02335	PWY-6124	inosine-5'-phosphate biosynthesis II
PGJ_RS02335	PWY-7234	inosine-5'-phosphate biosynthesis III
PGJ_RS02450	PWY-5667	CDP-diacylglycerol biosynthesis I
PGJ_RS02450	PWY-5981	CDP-diacylglycerol biosynthesis III
PGJ_RS02455	PWY-3801	sucrose degradation II (sucrose synthase)
PGJ_RS02455	PWY-5054	sorbitol biosynthesis I
PGJ_RS02455	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PGJ_RS02455	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PGJ_RS02455	PWY-5659	GDP-mannose biosynthesis
PGJ_RS02455	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PGJ_RS02455	PWY-621	sucrose degradation III (sucrose invertase)
PGJ_RS02455	PWY-622	starch biosynthesis
PGJ_RS02455	PWY-6981	chitin biosynthesis
PGJ_RS02455	PWY-6992	1,5-anhydrofructose degradation
PGJ_RS02455	PWY-7238	sucrose biosynthesis II
PGJ_RS02455	PWY-7347	sucrose biosynthesis III
PGJ_RS02455	PWY-7385	1,3-propanediol biosynthesis (engineered)
PGJ_RS02465	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PGJ_RS02465	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PGJ_RS02475	PWY-7294	xylose degradation IV
PGJ_RS02475	PWY-7295	L-arabinose degradation IV
PGJ_RS02475	PWY-7560	methylerythritol phosphate pathway II
PGJ_RS02480	PWY-6825	phosphatidylcholine biosynthesis V
PGJ_RS02490	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PGJ_RS02490	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PGJ_RS02490	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PGJ_RS02535	PWY-5686	UMP biosynthesis
PGJ_RS02550	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PGJ_RS02550	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PGJ_RS02550	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
PGJ_RS02555	PWY-6700	queuosine biosynthesis
PGJ_RS02570	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PGJ_RS02570	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PGJ_RS02575	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PGJ_RS02575	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PGJ_RS02635	PWY-5392	reductive TCA cycle II
PGJ_RS02635	PWY-5537	pyruvate fermentation to acetate V
PGJ_RS02635	PWY-5538	pyruvate fermentation to acetate VI
PGJ_RS02635	PWY-5690	TCA cycle II (plants and fungi)
PGJ_RS02635	PWY-5913	TCA cycle VI (obligate autotrophs)
PGJ_RS02635	PWY-6728	methylaspartate cycle
PGJ_RS02635	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PGJ_RS02635	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PGJ_RS02665	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
PGJ_RS02665	PWY-2161	folate polyglutamylation
PGJ_RS02665	PWY-2201	folate transformations I
PGJ_RS02665	PWY-3841	folate transformations II
PGJ_RS02695	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PGJ_RS02725	PWY-6703	preQ<sub>0</sub> biosynthesis
PGJ_RS02770	PWY-6825	phosphatidylcholine biosynthesis V
PGJ_RS02805	PWY-5057	L-valine degradation II
PGJ_RS02805	PWY-5076	L-leucine degradation III
PGJ_RS02805	PWY-5078	L-isoleucine degradation II
PGJ_RS02805	PWY-5101	L-isoleucine biosynthesis II
PGJ_RS02805	PWY-5103	L-isoleucine biosynthesis III
PGJ_RS02805	PWY-5104	L-isoleucine biosynthesis IV
PGJ_RS02805	PWY-5108	L-isoleucine biosynthesis V
PGJ_RS02810	PWY-5481	pyruvate fermentation to lactate
PGJ_RS02810	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PGJ_RS02810	PWY-6901	superpathway of glucose and xylose degradation
PGJ_RS02815	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
PGJ_RS02815	PWY-5739	GDP-D-perosamine biosynthesis
PGJ_RS02815	PWY-5740	GDP-L-colitose biosynthesis
PGJ_RS02815	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PGJ_RS02815	PWY-7573	GDP-mycosamine biosynthesis
PGJ_RS02825	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PGJ_RS02825	PWY-6855	chitin degradation I (archaea)
PGJ_RS02825	PWY-6906	chitin derivatives degradation
PGJ_RS02875	PWY-3341	L-proline biosynthesis III
PGJ_RS02875	PWY-4981	L-proline biosynthesis II (from arginine)
PGJ_RS02875	PWY-6344	L-ornithine degradation II (Stickland reaction)
PGJ_RS02875	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PGJ_RS02880	PWY-4981	L-proline biosynthesis II (from arginine)
PGJ_RS02885	PWY-6853	ethylene biosynthesis II (microbes)
PGJ_RS02935	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PGJ_RS02935	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PGJ_RS02935	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PGJ_RS02995	PWY-6164	3-dehydroquinate biosynthesis I
PGJ_RS03035	PWY-5367	petroselinate biosynthesis
PGJ_RS03035	PWY-5515	L-arabinose degradation II
PGJ_RS03035	PWY-5525	D-glucuronate degradation I
PGJ_RS03035	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PGJ_RS03035	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PGJ_RS03035	PWY-5989	stearate biosynthesis II (bacteria and plants)
PGJ_RS03035	PWY-5994	palmitate biosynthesis I (animals and fungi)
PGJ_RS03035	PWY-6113	superpathway of mycolate biosynthesis
PGJ_RS03035	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PGJ_RS03035	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PGJ_RS03035	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PGJ_RS03035	PWY-7663	gondoate biosynthesis (anaerobic)
PGJ_RS03035	PWY-7664	oleate biosynthesis IV (anaerobic)
PGJ_RS03035	PWYG-321	mycolate biosynthesis
PGJ_RS03110	PWY-181	photorespiration
PGJ_RS03580	PWY-1361	benzoyl-CoA degradation I (aerobic)
PGJ_RS03580	PWY-5109	2-methylbutanoate biosynthesis
PGJ_RS03580	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PGJ_RS03580	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PGJ_RS03580	PWY-5177	glutaryl-CoA degradation
PGJ_RS03580	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PGJ_RS03580	PWY-6435	4-hydroxybenzoate biosynthesis V
PGJ_RS03580	PWY-6583	pyruvate fermentation to butanol I
PGJ_RS03580	PWY-6863	pyruvate fermentation to hexanol
PGJ_RS03580	PWY-6883	pyruvate fermentation to butanol II
PGJ_RS03580	PWY-6944	androstenedione degradation
PGJ_RS03580	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PGJ_RS03580	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PGJ_RS03580	PWY-7007	methyl ketone biosynthesis
PGJ_RS03580	PWY-7046	4-coumarate degradation (anaerobic)
PGJ_RS03580	PWY-7094	fatty acid salvage
PGJ_RS03580	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PGJ_RS03580	PWY-735	jasmonic acid biosynthesis
PGJ_RS03580	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PGJ_RS03580	PWY-7606	docosahexaenoate biosynthesis III (mammals)
PGJ_RS03580	PWY-7726	PGJ_RS03580
PGJ_RS03585	PWY-5482	pyruvate fermentation to acetate II
PGJ_RS03585	PWY-5485	pyruvate fermentation to acetate IV
PGJ_RS03585	PWY-5497	purine nucleobases degradation II (anaerobic)
PGJ_RS03590	PWY-1281	sulfoacetaldehyde degradation I
PGJ_RS03590	PWY-5482	pyruvate fermentation to acetate II
PGJ_RS03590	PWY-5485	pyruvate fermentation to acetate IV
PGJ_RS03590	PWY-5497	purine nucleobases degradation II (anaerobic)
PGJ_RS03590	PWY-6637	sulfolactate degradation II
PGJ_RS03635	PWY-6749	CMP-legionaminate biosynthesis I
PGJ_RS03650	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PGJ_RS03705	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PGJ_RS03705	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PGJ_RS03710	PWY-5155	&beta;-alanine biosynthesis III
PGJ_RS03720	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
PGJ_RS03720	PWY-2201	folate transformations I
PGJ_RS03720	PWY-3841	folate transformations II
PGJ_RS03720	PWY-5030	L-histidine degradation III
PGJ_RS03720	PWY-5497	purine nucleobases degradation II (anaerobic)
PGJ_RS03720	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PGJ_RS03750	PWY-6123	inosine-5'-phosphate biosynthesis I
PGJ_RS03750	PWY-6124	inosine-5'-phosphate biosynthesis II
PGJ_RS03750	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS03750	PWY-7234	inosine-5'-phosphate biosynthesis III
PGJ_RS03755	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PGJ_RS03755	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PGJ_RS03755	PWY-6268	adenosylcobalamin salvage from cobalamin
PGJ_RS03755	PWY-6269	adenosylcobalamin salvage from cobinamide II
PGJ_RS03780	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PGJ_RS03780	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PGJ_RS03780	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PGJ_RS03780	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PGJ_RS03780	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PGJ_RS03780	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PGJ_RS03780	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PGJ_RS03780	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PGJ_RS03855	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
PGJ_RS03920	PWY-5443	aminopropanol phosphate biosynthesis I
PGJ_RS03930	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PGJ_RS03930	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PGJ_RS03930	PWY-6268	adenosylcobalamin salvage from cobalamin
PGJ_RS03930	PWY-6269	adenosylcobalamin salvage from cobinamide II
PGJ_RS04000	PWY-6703	preQ<sub>0</sub> biosynthesis
PGJ_RS04065	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
PGJ_RS04125	PWY-5958	acridone alkaloid biosynthesis
PGJ_RS04125	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PGJ_RS04125	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PGJ_RS04155	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PGJ_RS04155	PWY-6549	L-glutamine biosynthesis III
PGJ_RS04155	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PGJ_RS04155	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PGJ_RS04305	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PGJ_RS04310	PWY-5839	menaquinol-7 biosynthesis
PGJ_RS04310	PWY-5844	menaquinol-9 biosynthesis
PGJ_RS04310	PWY-5849	menaquinol-6 biosynthesis
PGJ_RS04310	PWY-5890	menaquinol-10 biosynthesis
PGJ_RS04310	PWY-5891	menaquinol-11 biosynthesis
PGJ_RS04310	PWY-5892	menaquinol-12 biosynthesis
PGJ_RS04310	PWY-5895	menaquinol-13 biosynthesis
PGJ_RS04315	PWY-6123	inosine-5'-phosphate biosynthesis I
PGJ_RS04315	PWY-6124	inosine-5'-phosphate biosynthesis II
PGJ_RS04315	PWY-7234	inosine-5'-phosphate biosynthesis III
PGJ_RS04330	PWY-6700	queuosine biosynthesis
PGJ_RS04355	PWY-5669	phosphatidylethanolamine biosynthesis I
PGJ_RS04360	PWY-5669	phosphatidylethanolamine biosynthesis I
PGJ_RS04395	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
PGJ_RS04395	PWY-6167	flavin biosynthesis II (archaea)
PGJ_RS04395	PWY-6168	flavin biosynthesis III (fungi)
PGJ_RS04415	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PGJ_RS04415	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PGJ_RS04415	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PGJ_RS04415	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
PGJ_RS04425	PWY-6123	inosine-5'-phosphate biosynthesis I
PGJ_RS04425	PWY-7234	inosine-5'-phosphate biosynthesis III
PGJ_RS04480	PWY-7560	methylerythritol phosphate pathway II
PGJ_RS04530	PWY-7199	pyrimidine deoxyribonucleosides salvage
PGJ_RS04555	PWY-5686	UMP biosynthesis
PGJ_RS04610	PWY-40	putrescine biosynthesis I
PGJ_RS04610	PWY-43	putrescine biosynthesis II
PGJ_RS04610	PWY-6305	putrescine biosynthesis IV
PGJ_RS04610	PWY-6834	spermidine biosynthesis III
PGJ_RS04670	PWY-6807	xyloglucan degradation II (exoglucanase)
PGJ_RS04690	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PGJ_RS04690	PWY-5491	diethylphosphate degradation
PGJ_RS04700	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PGJ_RS04700	PWY-6148	tetrahydromethanopterin biosynthesis
PGJ_RS04700	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PGJ_RS04700	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PGJ_RS04705	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PGJ_RS04705	PWY-3461	L-tyrosine biosynthesis II
PGJ_RS04705	PWY-3462	L-phenylalanine biosynthesis II
PGJ_RS04705	PWY-6120	L-tyrosine biosynthesis III
PGJ_RS04705	PWY-6627	salinosporamide A biosynthesis
PGJ_RS04705	PWY-7626	bacilysin biosynthesis
PGJ_RS04705	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PGJ_RS04920	PWY-2942	L-lysine biosynthesis III
PGJ_RS04935	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PGJ_RS04935	PWY-6855	chitin degradation I (archaea)
PGJ_RS04935	PWY-6906	chitin derivatives degradation
PGJ_RS04940	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PGJ_RS04940	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PGJ_RS04975	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS04990	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS05055	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
PGJ_RS05055	PWY-5368	dimorphecolate biosynthesis
PGJ_RS05055	PWY-5995	linoleate biosynthesis I (plants)
PGJ_RS05055	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
PGJ_RS05055	PWY-6803	phosphatidylcholine acyl editing
PGJ_RS05055	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
PGJ_RS05055	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
PGJ_RS05055	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
PGJ_RS05055	PWY-7470	phosphatidylcholine biosynthesis VII
PGJ_RS05055	PWY-7618	ricinoleate biosynthesis
PGJ_RS05095	PWY-5941	glycogen degradation II (eukaryotic)
PGJ_RS05095	PWY-6724	starch degradation II
PGJ_RS05095	PWY-6737	starch degradation V
PGJ_RS05095	PWY-7238	sucrose biosynthesis II
PGJ_RS05235	PWY-6823	molybdenum cofactor biosynthesis
PGJ_RS05235	PWY-6891	thiazole biosynthesis II (Bacillus)
PGJ_RS05235	PWY-6892	thiazole biosynthesis I (E. coli)
PGJ_RS05235	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
PGJ_RS05245	PWY-6167	flavin biosynthesis II (archaea)
PGJ_RS05245	PWY-6168	flavin biosynthesis III (fungi)
PGJ_RS05245	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS05265	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PGJ_RS05265	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PGJ_RS05320	PWY-5958	acridone alkaloid biosynthesis
PGJ_RS05320	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PGJ_RS05320	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PGJ_RS05360	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PGJ_RS05360	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PGJ_RS05365	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PGJ_RS05365	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PGJ_RS05365	PWY-6269	adenosylcobalamin salvage from cobinamide II
PGJ_RS05370	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PGJ_RS05370	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PGJ_RS05370	PWY-6269	adenosylcobalamin salvage from cobinamide II
PGJ_RS05375	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PGJ_RS05375	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PGJ_RS05375	PWY-6269	adenosylcobalamin salvage from cobinamide II
PGJ_RS05380	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PGJ_RS05380	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PGJ_RS05380	PWY-6269	adenosylcobalamin salvage from cobinamide II
PGJ_RS05400	PWY-5941	glycogen degradation II (eukaryotic)
PGJ_RS05400	PWY-6731	starch degradation III
PGJ_RS05400	PWY-6737	starch degradation V
PGJ_RS05400	PWY-7238	sucrose biosynthesis II
PGJ_RS05525	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PGJ_RS05590	PWY-4381	fatty acid biosynthesis initiation I
PGJ_RS05785	PWY-6807	xyloglucan degradation II (exoglucanase)
PGJ_RS05810	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PGJ_RS05810	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PGJ_RS05910	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PGJ_RS05910	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PGJ_RS05910	PWY-6896	thiamin salvage I
PGJ_RS05910	PWY-6897	thiamin salvage II
PGJ_RS05950	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PGJ_RS05950	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PGJ_RS05950	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
PGJ_RS05970	PWY-5663	tetrahydrobiopterin biosynthesis I
PGJ_RS05970	PWY-5664	tetrahydrobiopterin biosynthesis II
PGJ_RS05970	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PGJ_RS05970	PWY-6703	preQ<sub>0</sub> biosynthesis
PGJ_RS05970	PWY-6983	tetrahydrobiopterin biosynthesis III
PGJ_RS05970	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PGJ_RS05980	PWY-1042	glycolysis IV (plant cytosol)
PGJ_RS05980	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS05980	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PGJ_RS05980	PWY-7003	glycerol degradation to butanol
PGJ_RS06055	PWY-7205	CMP phosphorylation
PGJ_RS06065	PWY-6167	flavin biosynthesis II (archaea)
PGJ_RS06065	PWY-6168	flavin biosynthesis III (fungi)
PGJ_RS06065	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PGJ_RS06105	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS06110	PWY-6654	phosphopantothenate biosynthesis III
PGJ_RS06140	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PGJ_RS06140	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PGJ_RS06145	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PGJ_RS06145	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PGJ_RS06145	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PGJ_RS06145	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PGJ_RS06155	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PGJ_RS06155	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PGJ_RS06160	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PGJ_RS06160	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PGJ_RS06160	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PGJ_RS06180	PWY-2201	folate transformations I
PGJ_RS06190	PWY-2941	L-lysine biosynthesis II
PGJ_RS06190	PWY-2942	L-lysine biosynthesis III
PGJ_RS06190	PWY-5097	L-lysine biosynthesis VI
PGJ_RS06190	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PGJ_RS06190	PWY-6559	spermidine biosynthesis II
PGJ_RS06190	PWY-6562	norspermidine biosynthesis
PGJ_RS06190	PWY-7153	grixazone biosynthesis
PGJ_RS06190	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PGJ_RS06225	PWY-4202	arsenate detoxification I (glutaredoxin)
PGJ_RS06225	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PGJ_RS06225	PWY-6608	guanosine nucleotides degradation III
PGJ_RS06225	PWY-6609	adenine and adenosine salvage III
PGJ_RS06225	PWY-6611	adenine and adenosine salvage V
PGJ_RS06225	PWY-6620	guanine and guanosine salvage
PGJ_RS06225	PWY-6627	salinosporamide A biosynthesis
PGJ_RS06225	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
PGJ_RS06225	PWY-7179	purine deoxyribonucleosides degradation I
PGJ_RS06225	PWY-7179-1	purine deoxyribonucleosides degradation
PGJ_RS06360	PWY-5381	pyridine nucleotide cycling (plants)
PGJ_RS06360	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PGJ_RS06365	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PGJ_RS06365	PWY-5686	UMP biosynthesis
PGJ_RS06365	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PGJ_RS06370	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PGJ_RS06370	PWY-5686	UMP biosynthesis
PGJ_RS06370	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PGJ_RS06385	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
PGJ_RS06385	PWY-7177	UTP and CTP dephosphorylation II
PGJ_RS06385	PWY-7185	UTP and CTP dephosphorylation I
PGJ_RS06390	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PGJ_RS06390	PWY-6596	adenosine nucleotides degradation I
PGJ_RS06390	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS06395	PWY-2781	<i>cis</i>-zeatin biosynthesis
PGJ_RS06430	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PGJ_RS06430	PWY-5491	diethylphosphate degradation
PGJ_RS06445	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS06480	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PGJ_RS06480	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PGJ_RS06500	PWY-6700	queuosine biosynthesis
PGJ_RS06565	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
PGJ_RS06565	PWY-6153	autoinducer AI-2 biosynthesis I
PGJ_RS06565	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
PGJ_RS06570	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
PGJ_RS06570	PWY-6153	autoinducer AI-2 biosynthesis I
PGJ_RS06570	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
PGJ_RS06670	PWY-6700	queuosine biosynthesis
PGJ_RS06685	PWY-3861	mannitol degradation II
PGJ_RS06685	PWY-3881	mannitol biosynthesis
PGJ_RS06685	PWY-5659	GDP-mannose biosynthesis
PGJ_RS06685	PWY-6992	1,5-anhydrofructose degradation
PGJ_RS06685	PWY-7456	mannan degradation
PGJ_RS06685	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
PGJ_RS06685	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
PGJ_RS06700	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS06705	PWY-2161	folate polyglutamylation
PGJ_RS06755	PWY-3961	phosphopantothenate biosynthesis II
PGJ_RS06810	PWY-2201	folate transformations I
PGJ_RS06815	PWY-6825	phosphatidylcholine biosynthesis V
PGJ_RS06825	PWY-5392	reductive TCA cycle II
PGJ_RS06825	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PGJ_RS06845	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PGJ_RS06845	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PGJ_RS06845	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PGJ_RS06845	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PGJ_RS07185	PWY-5686	UMP biosynthesis
PGJ_RS07220	PWY-3821	galactose degradation III
PGJ_RS07220	PWY-6317	galactose degradation I (Leloir pathway)
PGJ_RS07220	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
PGJ_RS07220	PWY-6527	stachyose degradation
PGJ_RS07220	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
PGJ_RS07220	PWY-7344	UDP-D-galactose biosynthesis
PGJ_RS07260	PWY-2781	<i>cis</i>-zeatin biosynthesis
PGJ_RS07280	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS07295	PWY-5030	L-histidine degradation III
PGJ_RS07300	PWY-5028	L-histidine degradation II
PGJ_RS07300	PWY-5030	L-histidine degradation III
PGJ_RS07315	PWY-5030	L-histidine degradation III
PGJ_RS07315	PWY-5497	purine nucleobases degradation II (anaerobic)
PGJ_RS07320	PWY-5028	L-histidine degradation II
PGJ_RS07320	PWY-5030	L-histidine degradation III
PGJ_RS07355	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
PGJ_RS07440	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PGJ_RS07440	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PGJ_RS07440	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PGJ_RS07525	PWY-1281	sulfoacetaldehyde degradation I
PGJ_RS07525	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PGJ_RS07525	PWY-5482	pyruvate fermentation to acetate II
PGJ_RS07525	PWY-5485	pyruvate fermentation to acetate IV
PGJ_RS07525	PWY-5497	purine nucleobases degradation II (anaerobic)
PGJ_RS07525	PWY-6637	sulfolactate degradation II
PGJ_RS07525	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PGJ_RS07540	PWY-6891	thiazole biosynthesis II (Bacillus)
PGJ_RS07540	PWY-6892	thiazole biosynthesis I (E. coli)
PGJ_RS07540	PWY-7560	methylerythritol phosphate pathway II
PGJ_RS07560	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
PGJ_RS07570	PWY-1042	glycolysis IV (plant cytosol)
PGJ_RS07570	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PGJ_RS07570	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS07570	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PGJ_RS07570	PWY-7385	1,3-propanediol biosynthesis (engineered)
PGJ_RS07620	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PGJ_RS07620	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PGJ_RS07700	PWY-7193	pyrimidine ribonucleosides salvage I
PGJ_RS07775	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
PGJ_RS07775	PWY-622	starch biosynthesis
PGJ_RS07815	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS07820	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PGJ_RS07875	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PGJ_RS07900	PWY-5674	nitrate reduction IV (dissimilatory)
PGJ_RS07920	PWY-1042	glycolysis IV (plant cytosol)
PGJ_RS07920	PWY-1622	formaldehyde assimilation I (serine pathway)
PGJ_RS07920	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PGJ_RS07920	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS07920	PWY-5723	Rubisco shunt
PGJ_RS07920	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PGJ_RS07920	PWY-6886	1-butanol autotrophic biosynthesis
PGJ_RS07920	PWY-6901	superpathway of glucose and xylose degradation
PGJ_RS07920	PWY-7003	glycerol degradation to butanol
PGJ_RS07920	PWY-7124	ethylene biosynthesis V (engineered)
PGJ_RS07920	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PGJ_RS07960	PWY-622	starch biosynthesis
PGJ_RS08050	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PGJ_RS08100	PWY-5028	L-histidine degradation II
PGJ_RS08100	PWY-5030	L-histidine degradation III
PGJ_RS08215	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PGJ_RS08215	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
PGJ_RS08220	PWY-6898	thiamin salvage III
PGJ_RS08220	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PGJ_RS08220	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PGJ_RS08220	PWY-7356	thiamin salvage IV (yeast)
PGJ_RS08430	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PGJ_RS08455	PWY-1622	formaldehyde assimilation I (serine pathway)
PGJ_RS08455	PWY-5392	reductive TCA cycle II
PGJ_RS08455	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PGJ_RS08455	PWY-5690	TCA cycle II (plants and fungi)
PGJ_RS08455	PWY-5913	TCA cycle VI (obligate autotrophs)
PGJ_RS08455	PWY-6728	methylaspartate cycle
PGJ_RS08455	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PGJ_RS08455	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PGJ_RS08455	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PGJ_RS08480	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PGJ_RS08650	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
PGJ_RS08675	PWY-2941	L-lysine biosynthesis II
PGJ_RS08675	PWY-2942	L-lysine biosynthesis III
PGJ_RS08675	PWY-5097	L-lysine biosynthesis VI
PGJ_RS08705	PWY-6749	CMP-legionaminate biosynthesis I
PGJ_RS08960	PWY-6825	phosphatidylcholine biosynthesis V
PGJ_RS09080	PWY-101	photosynthesis light reactions
PGJ_RS09080	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
PGJ_RS09090	PWY-6829	tRNA methylation (yeast)
PGJ_RS09090	PWY-7285	methylwyosine biosynthesis
PGJ_RS09090	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
PGJ_RS09170	PWY-2941	L-lysine biosynthesis II
PGJ_RS09170	PWY-2942	L-lysine biosynthesis III
PGJ_RS09170	PWY-5097	L-lysine biosynthesis VI
PGJ_RS09175	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PGJ_RS09220	PWY-3841	folate transformations II
PGJ_RS09220	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PGJ_RS09220	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PGJ_RS09220	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PGJ_RS09220	PWY-7199	pyrimidine deoxyribonucleosides salvage
PGJ_RS09220	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PGJ_RS09225	PWY-3841	folate transformations II
PGJ_RS09225	PWY-6614	tetrahydrofolate biosynthesis
PGJ_RS09240	PWY-2201	folate transformations I
PGJ_RS09250	PWY-7294	xylose degradation IV
PGJ_RS09250	PWY-7295	L-arabinose degradation IV
PGJ_RS09330	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PGJ_RS09355	PWY-6825	phosphatidylcholine biosynthesis V
PGJ_RS09375	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PGJ_RS09375	PWY-6148	tetrahydromethanopterin biosynthesis
PGJ_RS09375	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PGJ_RS09375	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PGJ_RS09445	PWY-6892	thiazole biosynthesis I (E. coli)
PGJ_RS09445	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PGJ_RS09450	PWY-6891	thiazole biosynthesis II (Bacillus)
PGJ_RS09450	PWY-6892	thiazole biosynthesis I (E. coli)
PGJ_RS09455	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PGJ_RS09455	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PGJ_RS09455	PWY-6897	thiamin salvage II
PGJ_RS09455	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PGJ_RS09455	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PGJ_RS09455	PWY-7356	thiamin salvage IV (yeast)
PGJ_RS09455	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PGJ_RS09460	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
PGJ_RS09530	PWY-1042	glycolysis IV (plant cytosol)
PGJ_RS09530	PWY-5484	glycolysis II (from fructose 6-phosphate)
PGJ_RS09530	PWY-6901	superpathway of glucose and xylose degradation
PGJ_RS09530	PWY-7003	glycerol degradation to butanol
PGJ_RS09540	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PGJ_RS09605	PWY-4381	fatty acid biosynthesis initiation I
PGJ_RS09685	PWY-2201	folate transformations I
PGJ_RS09700	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PGJ_RS09710	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
PGJ_RS09710	PWY-622	starch biosynthesis
PGJ_RS09715	PWY-5381	pyridine nucleotide cycling (plants)
PGJ_RS09715	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PGJ_RS09715	PWY-6596	adenosine nucleotides degradation I
PGJ_RS09715	PWY-6606	guanosine nucleotides degradation II
PGJ_RS09715	PWY-6607	guanosine nucleotides degradation I
PGJ_RS09715	PWY-6608	guanosine nucleotides degradation III
PGJ_RS09715	PWY-7185	UTP and CTP dephosphorylation I
PGJ_RS09830	PWY-5839	menaquinol-7 biosynthesis
PGJ_RS09830	PWY-5851	demethylmenaquinol-9 biosynthesis
PGJ_RS09830	PWY-5852	demethylmenaquinol-8 biosynthesis I
PGJ_RS09830	PWY-5853	demethylmenaquinol-6 biosynthesis I
PGJ_RS09830	PWY-5890	menaquinol-10 biosynthesis
PGJ_RS09830	PWY-5891	menaquinol-11 biosynthesis
PGJ_RS09830	PWY-5892	menaquinol-12 biosynthesis
PGJ_RS09830	PWY-5895	menaquinol-13 biosynthesis
PGJ_RS09835	PWY-2941	L-lysine biosynthesis II
PGJ_RS09835	PWY-2942	L-lysine biosynthesis III
PGJ_RS09835	PWY-5097	L-lysine biosynthesis VI
PGJ_RS09840	PWY-2941	L-lysine biosynthesis II
PGJ_RS09840	PWY-2942	L-lysine biosynthesis III
PGJ_RS09840	PWY-5097	L-lysine biosynthesis VI
PGJ_RS09840	PWY-6559	spermidine biosynthesis II
PGJ_RS09840	PWY-6562	norspermidine biosynthesis
PGJ_RS09840	PWY-7153	grixazone biosynthesis
PGJ_RS09905	PWY-6654	phosphopantothenate biosynthesis III
PGJ_RS09975	PWY-6891	thiazole biosynthesis II (Bacillus)
PGJ_RS09975	PWY-6892	thiazole biosynthesis I (E. coli)
PGJ_RS09975	PWY-7560	methylerythritol phosphate pathway II
