PGJ_RS00005	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
PGJ_RS00045	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS00045	SM01086	C-terminal, D2-small domain, of ClpB protein
PGJ_RS00065	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS00065	SM00448	cheY-homologous receiver domain
PGJ_RS00070	SM00387	Histidine kinase-like ATPases
PGJ_RS00080	SM00347	helix_turn_helix multiple antibiotic resistance protein
PGJ_RS00095	SM00881	CoA binding domain
PGJ_RS00160	SM00481	DNA polymerase alpha chain like domain
PGJ_RS00185	SM00758	PGJ_RS00185
PGJ_RS00190	SM00387	Histidine kinase-like ATPases
PGJ_RS00200	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS00220	SM00387	Histidine kinase-like ATPases
PGJ_RS00265	SM00028	Tetratricopeptide repeats
PGJ_RS00265	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS00310	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
PGJ_RS00315	SM00937	PGJ_RS00315
PGJ_RS00325	SM00047	Lysozyme subfamily 2
PGJ_RS00325	SM00257	Lysin motif
PGJ_RS00370	SM00487	DEAD-like helicases superfamily
PGJ_RS00370	SM00490	helicase superfamily c-terminal domain
PGJ_RS00420	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PGJ_RS00420	SM00534	ATPase domain of DNA mismatch repair MUTS family
PGJ_RS00430	SM00873	B3/4 domain
PGJ_RS00430	SM00874	tRNA synthetase B5 domain
PGJ_RS00430	SM00896	Ferredoxin-fold anticodon binding domain
PGJ_RS00480	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PGJ_RS00480	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PGJ_RS00480	SM00493	PGJ_RS00480
PGJ_RS00495	SM00984	UDP binding domain
PGJ_RS00560	SM00411	bacterial (prokaryotic) histone like domain
PGJ_RS00600	SM00855	Phosphoglycerate mutase family
PGJ_RS00615	SM00116	Domain in cystathionine beta-synthase and other proteins.
PGJ_RS00615	SM00924	MgtE intracellular N domain
PGJ_RS00620	SM00650	Ribosomal RNA adenine dimethylases
PGJ_RS00635	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PGJ_RS00640	SM00257	Lysin motif
PGJ_RS00650	SM00470	ParB-like nuclease domain
PGJ_RS00685	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS00695	SM00729	Elongator protein 3, MiaB family, Radical SAM
PGJ_RS00700	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS00700	SM00962	SRP54-type protein, GTPase domain
PGJ_RS00700	SM00963	SRP54-type protein, helical bundle domain
PGJ_RS00760	SM00363	S4 RNA-binding domain
PGJ_RS00785	SM00479	PGJ_RS00785
PGJ_RS00790	SM00347	helix_turn_helix multiple antibiotic resistance protein
PGJ_RS00795	SM00450	Rhodanese Homology Domain
PGJ_RS00840	SM00327	von Willebrand factor (vWF) type A domain
PGJ_RS00885	SM00935	Outer membrane protein (OmpH-like)
PGJ_RS00890	SM00935	Outer membrane protein (OmpH-like)
PGJ_RS01010	SM00479	PGJ_RS01010
PGJ_RS01020	SM00460	Transglutaminase/protease-like homologues
PGJ_RS01025	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS01060	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
PGJ_RS01060	SM00631	PGJ_RS01060
PGJ_RS01075	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PGJ_RS01075	SM00245	tail specific protease
PGJ_RS01085	SM00986	Uracil DNA glycosylase superfamily
PGJ_RS01085	SM00987	UreE urease accessory protein, C-terminal domain 
PGJ_RS01170	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS01190	SM00836	DALR anticodon binding domain
PGJ_RS01190	SM01016	Arginyl tRNA synthetase N terminal dom
PGJ_RS01215	SM01091	Transporter associated domain
PGJ_RS01235	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS01310	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PGJ_RS01340	SM00316	Ribosomal protein S1-like RNA-binding domain
PGJ_RS01340	SM00955	PGJ_RS01340
PGJ_RS01350	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS01365	SM00450	Rhodanese Homology Domain
PGJ_RS01400	SM00226	Low molecular weight phosphatase family
PGJ_RS01415	SM00843	PGJ_RS01415
PGJ_RS01465	SM00900	PGJ_RS01465
PGJ_RS01470	SM00434	DNA Topoisomerase IV
PGJ_RS01480	SM00245	tail specific protease
PGJ_RS01495	SM00155	Phospholipase D. Active site motifs.
PGJ_RS01500	SM00954	Region found in RelA / SpoT proteins
PGJ_RS01505	SM00028	Tetratricopeptide repeats
PGJ_RS01575	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS01655	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS01700	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS01720	SM00487	DEAD-like helicases superfamily
PGJ_RS01730	SM00387	Histidine kinase-like ATPases
PGJ_RS01730	SM00433	TopoisomeraseII
PGJ_RS01890	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PGJ_RS01910	SM00014	Acid phosphatase homologues
PGJ_RS01915	SM00028	Tetratricopeptide repeats
PGJ_RS01925	SM00028	Tetratricopeptide repeats
PGJ_RS01930	SM00327	von Willebrand factor (vWF) type A domain
PGJ_RS01935	SM00327	von Willebrand factor (vWF) type A domain
PGJ_RS02025	SM00100	Cyclic nucleotide-monophosphate binding domain
PGJ_RS02025	SM00419	helix_turn_helix, cAMP Regulatory protein
PGJ_RS02035	SM00450	Rhodanese Homology Domain
PGJ_RS02035	SM00849	Metallo-beta-lactamase superfamily
PGJ_RS02040	SM00450	Rhodanese Homology Domain
PGJ_RS02200	SM00028	Tetratricopeptide repeats
PGJ_RS02200	SM00387	Histidine kinase-like ATPases
PGJ_RS02205	SM00421	helix_turn_helix, Lux Regulon
PGJ_RS02205	SM00448	cheY-homologous receiver domain
PGJ_RS02210	SM00028	Tetratricopeptide repeats
PGJ_RS02250	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS02335	SM00798	AICARFT/IMPCHase bienzyme
PGJ_RS02335	SM00851	MGS-like domain
PGJ_RS02385	SM00434	DNA Topoisomerase IV
PGJ_RS02390	SM00028	Tetratricopeptide repeats
PGJ_RS02415	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS02425	SM00478	endonuclease III
PGJ_RS02480	SM00981	PGJ_RS02480
PGJ_RS02490	SM01209	PGJ_RS02490
PGJ_RS02490	SM01210	PGJ_RS02490
PGJ_RS02525	SM00563	Phosphate acyltransferases
PGJ_RS02550	SM00046	Diacylglycerol kinase catalytic domain (presumed)
PGJ_RS02570	SM00849	Metallo-beta-lactamase superfamily
PGJ_RS02605	SM00244	prohibitin homologues
PGJ_RS02625	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PGJ_RS02625	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PGJ_RS02635	SM00881	CoA binding domain
PGJ_RS02660	SM00670	Large family of predicted nucleotide-binding domains
PGJ_RS02715	SM00854	Bacterial capsule synthesis protein PGA_cap
PGJ_RS02740	SM00849	Metallo-beta-lactamase superfamily
PGJ_RS02775	SM00316	Ribosomal protein S1-like RNA-binding domain
PGJ_RS02790	SM00899	PGJ_RS02790
PGJ_RS02800	SM00155	Phospholipase D. Active site motifs.
PGJ_RS02835	SM01118	PGJ_RS02835
PGJ_RS02860	SM00984	UDP binding domain
PGJ_RS02870	SM00841	Elongation factor P, C-terminal
PGJ_RS02870	SM01185	PGJ_RS02870
PGJ_RS02945	SM00411	bacterial (prokaryotic) histone like domain
PGJ_RS02950	SM00316	Ribosomal protein S1-like RNA-binding domain
PGJ_RS02955	SM00493	PGJ_RS02955
PGJ_RS02965	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PGJ_RS02965	SM00292	breast cancer carboxy-terminal domain
PGJ_RS02965	SM00532	Ligase N family
PGJ_RS02980	SM00563	Phosphate acyltransferases
PGJ_RS03000	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PGJ_RS03035	SM00822	PGJ_RS03035
PGJ_RS03045	SM00421	helix_turn_helix, Lux Regulon
PGJ_RS03060	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PGJ_RS03090	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03095	SM00062	Bacterial periplasmic substrate-binding proteins
PGJ_RS03125	SM01409	PGJ_RS03125
PGJ_RS03145	SM00028	Tetratricopeptide repeats
PGJ_RS03220	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03225	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03265	SM00448	cheY-homologous receiver domain
PGJ_RS03265	SM00850	LytTr DNA-binding domain
PGJ_RS03370	SM00530	Helix-turn-helix XRE-family like proteins 
PGJ_RS03375	SM01040	BRO family, N-terminal domain
PGJ_RS03455	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03460	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03480	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PGJ_RS03480	SM00245	tail specific protease
PGJ_RS03495	SM00530	Helix-turn-helix XRE-family like proteins 
PGJ_RS03510	SM00882	Coenzyme A transferase
PGJ_RS03540	SM00534	ATPase domain of DNA mismatch repair MUTS family
PGJ_RS03555	SM00882	Coenzyme A transferase
PGJ_RS03565	SM00893	Electron transfer flavoprotein domain
PGJ_RS03570	SM00893	Electron transfer flavoprotein domain
PGJ_RS03610	SM00729	Elongator protein 3, MiaB family, Radical SAM
PGJ_RS03620	SM00448	cheY-homologous receiver domain
PGJ_RS03620	SM00862	Transcriptional regulatory protein, C terminal
PGJ_RS03650	SM01005	Alanine racemase, C-terminal domain
PGJ_RS03690	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03715	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03715	SM00962	SRP54-type protein, GTPase domain
PGJ_RS03715	SM00963	SRP54-type protein, helical bundle domain
PGJ_RS03730	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS03730	SM01086	C-terminal, D2-small domain, of ClpB protein
PGJ_RS03745	SM00363	S4 RNA-binding domain
PGJ_RS03770	SM00344	helix_turn_helix ASNC type
PGJ_RS03785	SM00028	Tetratricopeptide repeats
PGJ_RS03855	SM00984	UDP binding domain
PGJ_RS03860	SM00937	PGJ_RS03860
PGJ_RS03905	SM00363	S4 RNA-binding domain
PGJ_RS04010	SM00230	Calpain-like thiol protease family.
PGJ_RS04015	SM00419	helix_turn_helix, cAMP Regulatory protein
PGJ_RS04020	SM00422	helix_turn_helix, mercury resistance
PGJ_RS04040	SM00646	PGJ_RS04040
PGJ_RS04055	SM00529	Helix-turn-helix diphteria tox regulatory element
PGJ_RS04055	SM00899	PGJ_RS04055
PGJ_RS04105	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS04120	SM00028	Tetratricopeptide repeats
PGJ_RS04160	SM00028	Tetratricopeptide repeats
PGJ_RS04160	SM00386	HAT (Half-A-TPR) repeats
PGJ_RS04170	SM00729	Elongator protein 3, MiaB family, Radical SAM
PGJ_RS04175	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS04190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PGJ_RS04250	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PGJ_RS04370	SM00946	Prolyl-tRNA synthetase, C-terminal
PGJ_RS04395	SM00904	Riboflavin kinase
PGJ_RS04410	SM00028	Tetratricopeptide repeats
PGJ_RS04425	SM01001	AIR carboxylase
PGJ_RS04450	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS04465	SM00831	Cation transporter/ATPase, N-terminus
PGJ_RS04485	SM00729	Elongator protein 3, MiaB family, Radical SAM
PGJ_RS04490	SM00838	Elongation factor G C-terminus
PGJ_RS04490	SM00889	Elongation factor G, domain IV
PGJ_RS04515	SM00448	cheY-homologous receiver domain
PGJ_RS04600	SM00986	Uracil DNA glycosylase superfamily
PGJ_RS04600	SM00987	UreE urease accessory protein, C-terminal domain 
PGJ_RS04665	SM00642	Alpha-amylase domain
PGJ_RS04670	SM01038	Beta galactosidase small chain
PGJ_RS04690	SM00098	Alkaline phosphatase homologues
PGJ_RS04705	SM00830	Chorismate mutase type II
PGJ_RS04725	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS04820	SM00974	PGJ_RS04820
PGJ_RS04825	SM00487	DEAD-like helicases superfamily
PGJ_RS04830	SM00530	Helix-turn-helix XRE-family like proteins 
PGJ_RS04835	SM00028	Tetratricopeptide repeats
PGJ_RS04850	SM00530	Helix-turn-helix XRE-family like proteins 
PGJ_RS04905	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PGJ_RS04930	SM00849	Metallo-beta-lactamase superfamily
PGJ_RS05000	SM00873	B3/4 domain
PGJ_RS05060	SM00893	Electron transfer flavoprotein domain
PGJ_RS05065	SM00893	Electron transfer flavoprotein domain
PGJ_RS05095	SM01065	Starch binding domain
PGJ_RS05100	SM00316	Ribosomal protein S1-like RNA-binding domain
PGJ_RS05100	SM00322	K homology RNA-binding domain
PGJ_RS05115	SM00028	Tetratricopeptide repeats
PGJ_RS05160	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PGJ_RS05160	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PGJ_RS05160	SM00493	PGJ_RS05160
PGJ_RS05190	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS05190	SM00448	cheY-homologous receiver domain
PGJ_RS05195	SM00387	Histidine kinase-like ATPases
PGJ_RS05255	SM00740	PGJ_RS05255
PGJ_RS05260	SM00363	S4 RNA-binding domain
PGJ_RS05295	SM00448	cheY-homologous receiver domain
PGJ_RS05295	SM00862	Transcriptional regulatory protein, C terminal
PGJ_RS05365	SM00855	Phosphoglycerate mutase family
PGJ_RS05450	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS05510	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS05575	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PGJ_RS05575	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PGJ_RS05575	SM00493	PGJ_RS05575
PGJ_RS05605	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS05785	SM01038	Beta galactosidase small chain
PGJ_RS05835	SM00886	Stress responsive A/B Barrel Domain
PGJ_RS05870	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS05955	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS05960	SM00360	RNA recognition motif
PGJ_RS05995	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS05995	SM00464	Found in ATP-dependent protease La (LON)
PGJ_RS06095	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PGJ_RS06125	SM00864	Tubulin/FtsZ family, GTPase domain
PGJ_RS06125	SM00865	Tubulin/FtsZ family, C-terminal domain
PGJ_RS06130	SM00842	Cell division protein FtsA
PGJ_RS06170	SM00740	PGJ_RS06170
PGJ_RS06190	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PGJ_RS06200	SM00841	Elongation factor P, C-terminal
PGJ_RS06200	SM01185	PGJ_RS06200
PGJ_RS06255	SM00890	Domain of unknown function
PGJ_RS06320	SM00935	Outer membrane protein (OmpH-like)
PGJ_RS06365	SM00851	MGS-like domain
PGJ_RS06365	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PGJ_RS06370	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
PGJ_RS06390	SM01240	PGJ_RS06390
PGJ_RS06400	SM00883	Chaperonin 10 Kd subunit
PGJ_RS06435	SM00957	SecA DEAD-like domain
PGJ_RS06435	SM00958	SecA preprotein cross-linking domain
PGJ_RS06445	SM00072	Guanylate kinase homologues.
PGJ_RS06480	SM00729	Elongator protein 3, MiaB family, Radical SAM
PGJ_RS06595	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS06605	SM01323	PGJ_RS06605
PGJ_RS06650	SM00729	Elongator protein 3, MiaB family, Radical SAM
PGJ_RS06700	SM00788	Adenylosuccinate synthetase
PGJ_RS06735	SM01091	Transporter associated domain
PGJ_RS06745	SM00028	Tetratricopeptide repeats
PGJ_RS06845	SM00947	Carbonic anhydrase
PGJ_RS06925	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS06925	SM00994	ClpX C4-type zinc finger
PGJ_RS06925	SM01086	C-terminal, D2-small domain, of ClpB protein
PGJ_RS06930	SM00341	Helicase and RNase D C-terminal
PGJ_RS06930	SM00487	DEAD-like helicases superfamily
PGJ_RS06930	SM00490	helicase superfamily c-terminal domain
PGJ_RS06930	SM00956	PGJ_RS06930
PGJ_RS06950	SM00853	MutL C terminal dimerisation domain
PGJ_RS06950	SM01340	PGJ_RS06950
PGJ_RS06985	SM00322	K homology RNA-binding domain
PGJ_RS06985	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PGJ_RS07010	SM00100	Cyclic nucleotide-monophosphate binding domain
PGJ_RS07010	SM00419	helix_turn_helix, cAMP Regulatory protein
PGJ_RS07015	SM00663	RNA polymerase I subunit A N-terminus
PGJ_RS07040	SM00649	Ribosomal protein L11/L12
PGJ_RS07045	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
PGJ_RS07045	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PGJ_RS07085	SM00463	Small MutS-related domain
PGJ_RS07085	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PGJ_RS07085	SM00534	ATPase domain of DNA mismatch repair MUTS family
PGJ_RS07090	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PGJ_RS07100	SM00487	DEAD-like helicases superfamily
PGJ_RS07100	SM00490	helicase superfamily c-terminal domain
PGJ_RS07135	SM00387	Histidine kinase-like ATPases
PGJ_RS07135	SM00433	TopoisomeraseII
PGJ_RS07145	SM00474	3'-5' exonuclease
PGJ_RS07150	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
PGJ_RS07155	SM00062	Bacterial periplasmic substrate-binding proteins
PGJ_RS07175	SM00903	Flavin reductase like domain
PGJ_RS07215	SM00487	DEAD-like helicases superfamily
PGJ_RS07215	SM00490	helicase superfamily c-terminal domain
PGJ_RS07280	SM00357	Cold shock protein domain
PGJ_RS07280	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS07280	SM00384	DNA binding domain with preference for A/T rich regions
PGJ_RS07280	SM00959	Rho termination factor, N-terminal domain
PGJ_RS07295	SM01221	PGJ_RS07295
PGJ_RS07295	SM01222	PGJ_RS07295
PGJ_RS07405	SM00900	PGJ_RS07405
PGJ_RS07430	SM00028	Tetratricopeptide repeats
PGJ_RS07440	SM01211	PGJ_RS07440
PGJ_RS07510	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS07525	SM00919	Malic enzyme, NAD binding domain
PGJ_RS07525	SM01274	PGJ_RS07525
PGJ_RS07540	SM00861	Transketolase, pyrimidine binding domain
PGJ_RS07545	SM00812	Alpha-L-fucosidase
PGJ_RS07580	SM01387	PGJ_RS07580
PGJ_RS07590	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS07605	SM00358	Double-stranded RNA binding motif
PGJ_RS07605	SM00535	Ribonuclease III family
PGJ_RS07610	SM00825	Beta-ketoacyl synthase
PGJ_RS07630	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS07655	SM00478	endonuclease III
PGJ_RS07655	SM00525	PGJ_RS07655
PGJ_RS07660	SM00014	Acid phosphatase homologues
PGJ_RS07665	SM00487	DEAD-like helicases superfamily
PGJ_RS07665	SM00490	helicase superfamily c-terminal domain
PGJ_RS07665	SM00982	PGJ_RS07665
PGJ_RS07665	SM01058	CarD-like/TRCF domain
PGJ_RS07675	SM00271	DnaJ molecular chaperone homology domain
PGJ_RS07690	SM00506	Appr-1"-p processing enzyme
PGJ_RS07775	SM00642	Alpha-amylase domain
PGJ_RS07780	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
PGJ_RS07780	SM00474	3'-5' exonuclease
PGJ_RS07780	SM00475	5'-3' exonuclease
PGJ_RS07780	SM00482	DNA polymerase A domain
PGJ_RS07790	SM00028	Tetratricopeptide repeats
PGJ_RS07790	SM00342	helix_turn_helix, arabinose operon control protein
PGJ_RS07790	SM00387	Histidine kinase-like ATPases
PGJ_RS07790	SM00388	His Kinase A (phosphoacceptor) domain
PGJ_RS07790	SM00448	cheY-homologous receiver domain
PGJ_RS07840	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PGJ_RS07840	SM00954	Region found in RelA / SpoT proteins
PGJ_RS07870	SM00400	zinc finger
PGJ_RS07870	SM00493	PGJ_RS07870
PGJ_RS07920	SM01192	PGJ_RS07920
PGJ_RS07920	SM01193	PGJ_RS07920
PGJ_RS07945	SM00487	DEAD-like helicases superfamily
PGJ_RS07945	SM00490	helicase superfamily c-terminal domain
PGJ_RS07975	SM00060	Fibronectin type 3 domain
PGJ_RS08010	SM00967	RNA 2'-O ribose methyltransferase substrate binding
PGJ_RS08030	SM00479	PGJ_RS08030
PGJ_RS08035	SM00480	DNA polymerase III beta subunit
PGJ_RS08045	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PGJ_RS08045	SM00245	tail specific protease
PGJ_RS08080	SM00255	Toll - interleukin 1 - resistance
PGJ_RS08080	SM00365	Leucine-rich repeat, SDS22-like subfamily
PGJ_RS08080	SM00369	Leucine-rich repeats, typical (most populated) subfamily
PGJ_RS08115	SM00563	Phosphate acyltransferases
PGJ_RS08125	SM00840	PGJ_RS08125
PGJ_RS08150	SM00812	Alpha-L-fucosidase
PGJ_RS08165	SM00450	Rhodanese Homology Domain
PGJ_RS08220	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
PGJ_RS08260	SM00662	RNA polymerases D
PGJ_RS08265	SM00363	S4 RNA-binding domain
PGJ_RS08265	SM01390	PGJ_RS08265
PGJ_RS08280	SM00316	Ribosomal protein S1-like RNA-binding domain
PGJ_RS08335	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PGJ_RS08340	SM01374	PGJ_RS08340
PGJ_RS08360	SM00322	K homology RNA-binding domain
PGJ_RS08375	SM01382	PGJ_RS08375
PGJ_RS08375	SM01383	PGJ_RS08375
PGJ_RS08395	SM01403	PGJ_RS08395
PGJ_RS08400	SM00838	Elongation factor G C-terminus
PGJ_RS08400	SM00889	Elongation factor G, domain IV
PGJ_RS08445	SM00028	Tetratricopeptide repeats
PGJ_RS08560	SM00028	Tetratricopeptide repeats
PGJ_RS08630	SM01228	PGJ_RS08630
PGJ_RS08635	SM00465	GIY-YIG type nucleases (URI domain)
PGJ_RS08650	SM01133	PGJ_RS08650
PGJ_RS08680	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PGJ_RS08725	SM00530	Helix-turn-helix XRE-family like proteins 
PGJ_RS08785	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PGJ_RS08785	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PGJ_RS08785	SM00493	PGJ_RS08785
PGJ_RS08815	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS09045	SM00855	Phosphoglycerate mutase family
PGJ_RS09105	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
PGJ_RS09145	SM00977	TilS substrate C-terminal domain
PGJ_RS09170	SM01130	PGJ_RS09170
PGJ_RS09330	SM00729	Elongator protein 3, MiaB family, Radical SAM
PGJ_RS09330	SM00876	Biotin and Thiamin Synthesis associated domain
PGJ_RS09375	SM00905	Dihydroneopterin aldolase
PGJ_RS09400	SM01400	PGJ_RS09400
PGJ_RS09405	SM00487	DEAD-like helicases superfamily
PGJ_RS09405	SM00490	helicase superfamily c-terminal domain
PGJ_RS09445	SM00876	Biotin and Thiamin Synthesis associated domain
PGJ_RS09510	SM00849	Metallo-beta-lactamase superfamily
PGJ_RS09515	SM00870	PGJ_RS09515
PGJ_RS09530	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PGJ_RS09535	SM00342	helix_turn_helix, arabinose operon control protein
PGJ_RS09655	SM00257	Lysin motif
PGJ_RS09705	SM00342	helix_turn_helix, arabinose operon control protein
PGJ_RS09805	SM00900	PGJ_RS09805
PGJ_RS09845	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS09850	SM00257	Lysin motif
PGJ_RS09880	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS09885	SM00028	Tetratricopeptide repeats
PGJ_RS09895	SM00732	Likely ribonuclease with RNase H fold.
PGJ_RS09900	SM01360	PGJ_RS09900
PGJ_RS09910	SM00382	ATPases associated with a variety of cellular activities
PGJ_RS09975	SM00861	Transketolase, pyrimidine binding domain
PGJ_RS09995	SM00729	Elongator protein 3, MiaB family, Radical SAM
