locus-tag class description CS550_RS00015 PF00164 Ribosomal protein S12/S23 CS550_RS00020 PF00177 Ribosomal protein S7p/S5e CS550_RS00025 PF03764 Elongation factor G, domain IV CS550_RS00025 PF14492 Elongation Factor G, domain II CS550_RS00025 PF00679 Elongation factor G C-terminus CS550_RS00025 PF03144 Elongation factor Tu domain 2 CS550_RS00025 PF00009 Elongation factor Tu GTP binding domain CS550_RS00030 PF00338 Ribosomal protein S10p/S20e CS550_RS00035 PF00297 Ribosomal protein L3 CS550_RS00040 PF00573 Ribosomal protein L4/L1 family CS550_RS00045 PF00276 Ribosomal protein L23 CS550_RS00050 PF00181 Ribosomal Proteins L2, RNA binding domain CS550_RS00050 PF03947 Ribosomal Proteins L2, C-terminal domain CS550_RS00055 PF00203 Ribosomal protein S19 CS550_RS00060 PF00237 Ribosomal protein L22p/L17e CS550_RS00065 PF00189 Ribosomal protein S3, C-terminal domain CS550_RS00065 PF07650 KH domain CS550_RS00070 PF00252 Ribosomal protein L16p/L10e CS550_RS00075 PF00831 Ribosomal L29 protein CS550_RS00080 PF00366 Ribosomal protein S17 CS550_RS00085 PF00238 Ribosomal protein L14p/L23e CS550_RS00090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CS550_RS00090 PF00467 KOW motif CS550_RS00095 PF00673 ribosomal L5P family C-terminus CS550_RS00095 PF00281 Ribosomal protein L5 CS550_RS00100 PF00253 Ribosomal protein S14p/S29e CS550_RS00105 PF00410 Ribosomal protein S8 CS550_RS00110 PF00347 Ribosomal protein L6 CS550_RS00115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CS550_RS00120 PF03719 Ribosomal protein S5, C-terminal domain CS550_RS00120 PF00333 Ribosomal protein S5, N-terminal domain CS550_RS00125 PF00327 Ribosomal protein L30p/L7e CS550_RS00130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CS550_RS00135 PF00344 SecY translocase CS550_RS00140 PF00557 Metallopeptidase family M24 CS550_RS00145 PF01176 Translation initiation factor 1A / IF-1 CS550_RS00150 PF00444 Ribosomal protein L36 CS550_RS00155 PF00416 Ribosomal protein S13/S18 CS550_RS00160 PF00411 Ribosomal protein S11 CS550_RS00165 PF00163 Ribosomal protein S4/S9 N-terminal domain CS550_RS00165 PF01479 S4 domain CS550_RS00170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CS550_RS00170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CS550_RS00170 PF01000 RNA polymerase Rpb3/RpoA insert domain CS550_RS00175 PF01196 Ribosomal protein L17 CS550_RS00200 PF00696 Amino acid kinase family CS550_RS00205 PF01765 Ribosome recycling factor CS550_RS00210 PF03193 RsgA GTPase CS550_RS00210 PF16745 RsgA N-terminal domain CS550_RS00230 PF00438 S-adenosylmethionine synthetase, N-terminal domain CS550_RS00230 PF02773 S-adenosylmethionine synthetase, C-terminal domain CS550_RS00230 PF02772 S-adenosylmethionine synthetase, central domain CS550_RS00265 PF13167 GTP-binding GTPase N-terminal CS550_RS00265 PF01926 50S ribosome-binding GTPase CS550_RS00265 PF16360 GTP-binding GTPase Middle Region CS550_RS00270 PF02503 Polyphosphate kinase middle domain CS550_RS00270 PF13090 Polyphosphate kinase C-terminal domain 2 CS550_RS00270 PF13089 Polyphosphate kinase N-terminal domain CS550_RS00270 PF17941 Polyphosphate kinase C-terminal domain 1 CS550_RS00285 PF00535 Glycosyl transferase family 2 CS550_RS00290 PF01734 Patatin-like phospholipase CS550_RS00295 PF09190 DALR domain CS550_RS00295 PF01406 tRNA synthetases class I (C) catalytic domain CS550_RS00300 PF06965 Na+/H+ antiporter 1 CS550_RS00315 PF02021 Uncharacterised protein family UPF0102 CS550_RS00320 PF17391 Urocanase N-terminal domain CS550_RS00320 PF17392 Urocanase C-terminal domain CS550_RS00320 PF01175 Urocanase Rossmann-like domain CS550_RS00325 PF01209 ubiE/COQ5 methyltransferase family CS550_RS00330 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CS550_RS00360 PF02595 Glycerate kinase family CS550_RS00365 PF00258 Flavodoxin CS550_RS00380 PF03572 Peptidase family S41 CS550_RS00380 PF01471 Putative peptidoglycan binding domain CS550_RS00380 PF13180 PDZ domain CS550_RS00385 PF01812 5-formyltetrahydrofolate cyclo-ligase family CS550_RS00390 PF00712 DNA polymerase III beta subunit, N-terminal domain CS550_RS00390 PF02767 DNA polymerase III beta subunit, central domain CS550_RS00390 PF02768 DNA polymerase III beta subunit, C-terminal domain CS550_RS00395 PF00929 Exonuclease CS550_RS00400 PF04127 DNA / pantothenate metabolism flavoprotein CS550_RS00400 PF02441 Flavoprotein CS550_RS00410 PF02463 RecF/RecN/SMC N terminal domain CS550_RS00415 PF00588 SpoU rRNA Methylase family CS550_RS00415 PF08032 RNA 2'-O ribose methyltransferase substrate binding CS550_RS00420 PF01042 Endoribonuclease L-PSP CS550_RS00440 PF01432 Peptidase family M3 CS550_RS00455 PF00999 Sodium/hydrogen exchanger family CS550_RS00460 PF00128 Alpha amylase, catalytic domain CS550_RS00460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CS550_RS00460 PF02806 Alpha amylase, C-terminal all-beta domain CS550_RS00465 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CS550_RS00465 PF00476 DNA polymerase family A CS550_RS00465 PF01612 3'-5' exonuclease CS550_RS00465 PF01367 5'-3' exonuclease, C-terminal SAM fold CS550_RS00470 PF00512 His Kinase A (phospho-acceptor) domain CS550_RS00470 PF08448 PAS fold CS550_RS00470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS00470 PF13426 PAS domain CS550_RS00470 PF00072 Response regulator receiver domain CS550_RS00490 PF16886 ATPsynthase alpha/beta subunit N-term extension CS550_RS00490 PF02874 ATP synthase alpha/beta family, beta-barrel domain CS550_RS00490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS550_RS00495 PF02874 ATP synthase alpha/beta family, beta-barrel domain CS550_RS00495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS550_RS00505 PF01496 V-type ATPase 116kDa subunit family CS550_RS00515 PF04607 Region found in RelA / SpoT proteins CS550_RS00515 PF13291 ACT domain CS550_RS00515 PF02824 TGS domain CS550_RS00545 PF10410 DnaB-helicase binding domain of primase CS550_RS00545 PF08275 DNA primase catalytic core, N-terminal domain CS550_RS00545 PF01807 CHC2 zinc finger CS550_RS00550 PF02348 Cytidylyltransferase CS550_RS00555 PF02525 Flavodoxin-like fold CS550_RS00560 PF01578 Cytochrome C assembly protein CS550_RS00570 PF02335 Cytochrome c552 CS550_RS00575 PF03264 NapC/NirT cytochrome c family, N-terminal region CS550_RS00590 PF03952 Enolase, N-terminal domain CS550_RS00590 PF00113 Enolase, C-terminal TIM barrel domain CS550_RS00600 PF08281 Sigma-70, region 4 CS550_RS00600 PF04542 Sigma-70 region 2 CS550_RS00610 PF00501 AMP-binding enzyme CS550_RS00615 PF16124 RecQ zinc-binding CS550_RS00615 PF09382 RQC domain CS550_RS00615 PF00271 Helicase conserved C-terminal domain CS550_RS00615 PF00270 DEAD/DEAH box helicase CS550_RS00615 PF00570 HRDC domain CS550_RS00630 PF08323 Starch synthase catalytic domain CS550_RS00630 PF00534 Glycosyl transferases group 1 CS550_RS00640 PF03825 Nucleoside H+ symporter CS550_RS00645 PF10365 Domain of unknown function (DUF2436) CS550_RS00645 PF07675 Cleaved Adhesin Domain CS550_RS00665 PF07675 Cleaved Adhesin Domain CS550_RS00665 PF01364 Peptidase family C25 CS550_RS00665 PF08126 Propeptide_C25 CS550_RS00665 PF10365 Domain of unknown function (DUF2436) CS550_RS00665 PF03785 Peptidase family C25, C terminal ig-like domain CS550_RS00710 PF00485 Phosphoribulokinase / Uridine kinase family CS550_RS00715 PF00155 Aminotransferase class I and II CS550_RS00720 PF01661 Macro domain CS550_RS00725 PF12850 Calcineurin-like phosphoesterase superfamily domain CS550_RS00730 PF01883 Iron-sulfur cluster assembly protein CS550_RS00735 PF01556 DnaJ C terminal domain CS550_RS00735 PF00684 DnaJ central domain CS550_RS00735 PF00226 DnaJ domain CS550_RS00740 PF01025 GrpE CS550_RS00745 PF17757 UvrB interaction domain CS550_RS00745 PF03461 TRCF domain CS550_RS00745 PF00271 Helicase conserved C-terminal domain CS550_RS00745 PF02559 CarD-like/TRCF domain CS550_RS00745 PF00270 DEAD/DEAH box helicase CS550_RS00750 PF01569 PAP2 superfamily CS550_RS00755 PF10576 Iron-sulfur binding domain of endonuclease III CS550_RS00755 PF00730 HhH-GPD superfamily base excision DNA repair protein CS550_RS00755 PF00633 Helix-hairpin-helix motif CS550_RS00760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CS550_RS00760 PF01409 tRNA synthetases class II core domain (F) CS550_RS00780 PF01078 Magnesium chelatase, subunit ChlI CS550_RS00780 PF13335 Magnesium chelatase, subunit ChlI C-terminal CS550_RS00790 PF00551 Formyl transferase CS550_RS00790 PF02911 Formyl transferase, C-terminal domain CS550_RS00795 PF00550 Phosphopantetheine attachment site CS550_RS00800 PF00109 Beta-ketoacyl synthase, N-terminal domain CS550_RS00800 PF02801 Beta-ketoacyl synthase, C-terminal domain CS550_RS00805 PF00035 Double-stranded RNA binding motif CS550_RS00805 PF14622 Ribonuclease-III-like CS550_RS00810 PF07549 SecD/SecF GG Motif CS550_RS00810 PF02355 Protein export membrane protein CS550_RS00820 PF00005 ABC transporter CS550_RS00835 PF00312 Ribosomal protein S15 CS550_RS00850 PF00274 Fructose-bisphosphate aldolase class-I CS550_RS00855 PF00326 Prolyl oligopeptidase family CS550_RS00855 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CS550_RS00860 PF00586 AIR synthase related protein, N-terminal domain CS550_RS00860 PF02769 AIR synthase related protein, C-terminal domain CS550_RS00880 PF00456 Transketolase, thiamine diphosphate binding domain CS550_RS00880 PF02780 Transketolase, C-terminal domain CS550_RS00880 PF02779 Transketolase, pyrimidine binding domain CS550_RS00885 PF02502 Ribose/Galactose Isomerase CS550_RS00895 PF01515 Phosphate acetyl/butaryl transferase CS550_RS00895 PF00390 Malic enzyme, N-terminal domain CS550_RS00895 PF03949 Malic enzyme, NAD binding domain CS550_RS00905 PF12704 MacB-like periplasmic core domain CS550_RS00905 PF02687 FtsX-like permease family CS550_RS00910 PF00005 ABC transporter CS550_RS00915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS550_RS00935 PF03781 Sulfatase-modifying factor enzyme 1 CS550_RS00955 PF02417 Chromate transporter CS550_RS00980 PF17782 DprA winged helix domain CS550_RS00980 PF02481 DNA recombination-mediator protein A CS550_RS00985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CS550_RS00985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CS550_RS00985 PF02769 AIR synthase related protein, C-terminal domain CS550_RS01010 PF04060 Putative Fe-S cluster CS550_RS01010 PF13187 4Fe-4S dicluster domain CS550_RS01015 PF10531 SLBB domain CS550_RS01015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CS550_RS01015 PF13375 RnfC Barrel sandwich hybrid domain CS550_RS01015 PF13237 4Fe-4S dicluster domain CS550_RS01020 PF03116 NQR2, RnfD, RnfE family CS550_RS01025 PF04205 FMN-binding domain CS550_RS01030 PF02508 Rnf-Nqr subunit, membrane protein CS550_RS01035 PF02508 Rnf-Nqr subunit, membrane protein CS550_RS01045 PF02424 ApbE family CS550_RS01050 PF00881 Nitroreductase family CS550_RS01055 PF00535 Glycosyl transferase family 2 CS550_RS01070 PF00829 Ribosomal prokaryotic L21 protein CS550_RS01075 PF01016 Ribosomal L27 protein CS550_RS01080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CS550_RS01080 PF02403 Seryl-tRNA synthetase N-terminal domain CS550_RS01115 PF00221 Aromatic amino acid lyase CS550_RS01120 PF04961 Formiminotransferase-cyclodeaminase CS550_RS01135 PF01979 Amidohydrolase family CS550_RS01140 PF07837 Formiminotransferase domain, N-terminal subdomain CS550_RS01140 PF02971 Formiminotransferase domain CS550_RS01155 PF07497 Rho termination factor, RNA-binding domain CS550_RS01155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS550_RS01165 PF00535 Glycosyl transferase family 2 CS550_RS01195 PF01053 Cys/Met metabolism PLP-dependent enzyme CS550_RS01210 PF01926 50S ribosome-binding GTPase CS550_RS01215 PF16363 GDP-mannose 4,6 dehydratase CS550_RS01220 PF00271 Helicase conserved C-terminal domain CS550_RS01220 PF17191 RecG wedge domain CS550_RS01220 PF00270 DEAD/DEAH box helicase CS550_RS01240 PF02973 Sialidase, N-terminal domain CS550_RS01240 PF00754 F5/8 type C domain CS550_RS01240 PF13088 BNR repeat-like domain CS550_RS01265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CS550_RS01265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CS550_RS01270 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CS550_RS01270 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CS550_RS01275 PF01613 Flavin reductase like domain CS550_RS01280 PF04011 LemA family CS550_RS01300 PF17785 PUA-like domain CS550_RS01300 PF10672 S-adenosylmethionine-dependent methyltransferase CS550_RS01315 PF01751 Toprim domain CS550_RS01315 PF00986 DNA gyrase B subunit, carboxyl terminus CS550_RS01315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS01315 PF00204 DNA gyrase B CS550_RS01320 PF01467 Cytidylyltransferase-like CS550_RS01330 PF00572 Ribosomal protein L13 CS550_RS01335 PF00380 Ribosomal protein S9/S16 CS550_RS01340 PF00318 Ribosomal protein S2 CS550_RS01345 PF00889 Elongation factor TS CS550_RS01350 PF04851 Type III restriction enzyme, res subunit CS550_RS01350 PF00271 Helicase conserved C-terminal domain CS550_RS01350 PF02151 UvrB/uvrC motif CS550_RS01350 PF12344 Ultra-violet resistance protein B CS550_RS01350 PF17757 UvrB interaction domain CS550_RS01355 PF00999 Sodium/hydrogen exchanger family CS550_RS01355 PF03471 Transporter associated domain CS550_RS01355 PF02080 TrkA-C domain CS550_RS01365 PF02163 Peptidase family M50 CS550_RS01365 PF17820 PDZ domain CS550_RS01370 PF01713 Smr domain CS550_RS01370 PF00488 MutS domain V CS550_RS01375 PF01165 Ribosomal protein S21 CS550_RS01380 PF00589 Phage integrase family CS550_RS01380 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS01395 PF00009 Elongation factor Tu GTP binding domain CS550_RS01395 PF03143 Elongation factor Tu C-terminal domain CS550_RS01395 PF03144 Elongation factor Tu domain 2 CS550_RS01410 PF00467 KOW motif CS550_RS01410 PF02357 Transcription termination factor nusG CS550_RS01415 PF03946 Ribosomal protein L11, N-terminal domain CS550_RS01415 PF00298 Ribosomal protein L11, RNA binding domain CS550_RS01420 PF00687 Ribosomal protein L1p/L10e family CS550_RS01425 PF00466 Ribosomal protein L10 CS550_RS01430 PF00542 Ribosomal protein L7/L12 C-terminal domain CS550_RS01430 PF16320 Ribosomal protein L7/L12 dimerisation domain CS550_RS01435 PF04560 RNA polymerase Rpb2, domain 7 CS550_RS01435 PF00562 RNA polymerase Rpb2, domain 6 CS550_RS01435 PF04563 RNA polymerase beta subunit CS550_RS01435 PF04561 RNA polymerase Rpb2, domain 2 CS550_RS01435 PF10385 RNA polymerase beta subunit external 1 domain CS550_RS01435 PF04565 RNA polymerase Rpb2, domain 3 CS550_RS01440 PF04998 RNA polymerase Rpb1, domain 5 CS550_RS01440 PF05000 RNA polymerase Rpb1, domain 4 CS550_RS01440 PF04997 RNA polymerase Rpb1, domain 1 CS550_RS01440 PF00623 RNA polymerase Rpb1, domain 2 CS550_RS01440 PF04983 RNA polymerase Rpb1, domain 3 CS550_RS01445 PF13545 Crp-like helix-turn-helix domain CS550_RS01445 PF00027 Cyclic nucleotide-binding domain CS550_RS01455 PF13175 AAA ATPase domain CS550_RS01465 PF04468 PSP1 C-terminal conserved region CS550_RS01470 PF01966 HD domain CS550_RS01470 PF00013 KH domain CS550_RS01470 PF12072 Domain of unknown function (DUF3552) CS550_RS01505 PF10365 Domain of unknown function (DUF2436) CS550_RS01505 PF07675 Cleaved Adhesin Domain CS550_RS01510 PF08676 MutL C terminal dimerisation domain CS550_RS01510 PF01119 DNA mismatch repair protein, C-terminal domain CS550_RS01525 PF09312 SurA N-terminal domain CS550_RS01525 PF00639 PPIC-type PPIASE domain CS550_RS01530 PF00270 DEAD/DEAH box helicase CS550_RS01530 PF09382 RQC domain CS550_RS01530 PF16124 RecQ zinc-binding CS550_RS01530 PF00570 HRDC domain CS550_RS01530 PF00271 Helicase conserved C-terminal domain CS550_RS01535 PF07724 AAA domain (Cdc48 subfamily) CS550_RS01535 PF06689 ClpX C4-type zinc finger CS550_RS01535 PF10431 C-terminal, D2-small domain, of ClpB protein CS550_RS01540 PF00574 Clp protease CS550_RS01575 PF00756 Putative esterase CS550_RS01575 PF01476 LysM domain CS550_RS01590 PF00873 AcrB/AcrD/AcrF family CS550_RS01615 PF00484 Carbonic anhydrase CS550_RS01635 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CS550_RS01635 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CS550_RS01635 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CS550_RS01640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS550_RS01645 PF01189 16S rRNA methyltransferase RsmB/F CS550_RS01645 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CS550_RS01645 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CS550_RS01650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS550_RS01665 PF13614 AAA domain CS550_RS01665 PF13807 G-rich domain on putative tyrosine kinase CS550_RS01665 PF02706 Chain length determinant protein CS550_RS01705 PF07687 Peptidase dimerisation domain CS550_RS01705 PF01546 Peptidase family M20/M25/M40 CS550_RS01710 PF00899 ThiF family CS550_RS01715 PF03309 Type III pantothenate kinase CS550_RS01735 PF01595 Cyclin M transmembrane N-terminal domain CS550_RS01735 PF03471 Transporter associated domain CS550_RS01735 PF00571 CBS domain CS550_RS01770 PF13808 DDE_Tnp_1-associated CS550_RS01770 PF01609 Transposase DDE domain CS550_RS01775 PF00589 Phage integrase family CS550_RS01775 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS01780 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS01780 PF00589 Phage integrase family CS550_RS01795 PF01638 HxlR-like helix-turn-helix CS550_RS01805 PF12833 Helix-turn-helix domain CS550_RS01805 PF01497 Periplasmic binding protein CS550_RS01810 PF01554 MatE CS550_RS01885 PF02875 Mur ligase family, glutamate ligase domain CS550_RS01885 PF08245 Mur ligase middle domain CS550_RS01890 PF00709 Adenylosuccinate synthetase CS550_RS01895 PF01475 Ferric uptake regulator family CS550_RS01905 PF01238 Phosphomannose isomerase type I CS550_RS01920 PF08331 Domain of unknown function (DUF1730) CS550_RS01935 PF06969 HemN C-terminal domain CS550_RS01935 PF04055 Radical SAM superfamily CS550_RS01945 PF02569 Pantoate-beta-alanine ligase CS550_RS01955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS550_RS01960 PF00155 Aminotransferase class I and II CS550_RS01970 PF01121 Dephospho-CoA kinase CS550_RS01980 PF02699 Preprotein translocase subunit CS550_RS01985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CS550_RS01985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CS550_RS01995 PF05491 RuvB C-terminal winged helix domain CS550_RS01995 PF17864 RuvB AAA lid domain CS550_RS01995 PF05496 Holliday junction DNA helicase RuvB P-loop domain CS550_RS02010 PF10459 Peptidase S46 CS550_RS02035 PF01048 Phosphorylase superfamily CS550_RS02040 PF02664 S-Ribosylhomocysteinase (LuxS) CS550_RS02050 PF01702 Queuine tRNA-ribosyltransferase CS550_RS02060 PF01668 SmpB protein CS550_RS02065 PF00326 Prolyl oligopeptidase family CS550_RS02065 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CS550_RS02070 PF04055 Radical SAM superfamily CS550_RS02075 PF08126 Propeptide_C25 CS550_RS02075 PF18630 Peptidase M60 C-terminal domain CS550_RS02075 PF01364 Peptidase family C25 CS550_RS02075 PF03785 Peptidase family C25, C terminal ig-like domain CS550_RS02095 PF02130 Uncharacterized protein family UPF0054 CS550_RS02100 PF07670 Nucleoside recognition CS550_RS02105 PF00625 Guanylate kinase CS550_RS02115 PF07516 SecA Wing and Scaffold domain CS550_RS02115 PF01043 SecA preprotein cross-linking domain CS550_RS02115 PF07517 SecA DEAD-like domain CS550_RS02115 PF02810 SEC-C motif CS550_RS02120 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CS550_RS02130 PF12705 PD-(D/E)XK nuclease superfamily CS550_RS02145 PF00118 TCP-1/cpn60 chaperonin family CS550_RS02150 PF00166 Chaperonin 10 Kd subunit CS550_RS02160 PF00571 CBS domain CS550_RS02160 PF00478 IMP dehydrogenase / GMP reductase domain CS550_RS02170 PF06418 CTP synthase N-terminus CS550_RS02170 PF00117 Glutamine amidotransferase class-I CS550_RS02175 PF02096 60Kd inner membrane protein CS550_RS02175 PF14849 YidC periplasmic domain CS550_RS02180 PF00156 Phosphoribosyl transferase domain CS550_RS02185 PF00117 Glutamine amidotransferase class-I CS550_RS02185 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CS550_RS02190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CS550_RS02190 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CS550_RS02190 PF02142 MGS-like domain CS550_RS02195 PF02540 NAD synthase CS550_RS02200 PF04294 VanW like protein CS550_RS02245 PF07687 Peptidase dimerisation domain CS550_RS02245 PF01546 Peptidase family M20/M25/M40 CS550_RS02250 PF02321 Outer membrane efflux protein CS550_RS02250 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CS550_RS02260 PF00873 AcrB/AcrD/AcrF family CS550_RS02275 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS02275 PF00589 Phage integrase family CS550_RS02300 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CS550_RS02300 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CS550_RS02300 PF10371 Domain of unknown function CS550_RS02300 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CS550_RS02300 PF12838 4Fe-4S dicluster domain CS550_RS02300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS550_RS02335 PF01048 Phosphorylase superfamily CS550_RS02340 PF01979 Amidohydrolase family CS550_RS02345 PF01546 Peptidase family M20/M25/M40 CS550_RS02345 PF07687 Peptidase dimerisation domain CS550_RS02350 PF06826 Predicted Permease Membrane Region CS550_RS02350 PF02080 TrkA-C domain CS550_RS02365 PF09285 Elongation factor P, C-terminal CS550_RS02365 PF08207 Elongation factor P (EF-P) KOW-like domain CS550_RS02365 PF01132 Elongation factor P (EF-P) OB domain CS550_RS02375 PF02774 Semialdehyde dehydrogenase, dimerisation domain CS550_RS02375 PF01118 Semialdehyde dehydrogenase, NAD binding domain CS550_RS02380 PF01795 MraW methylase family CS550_RS02390 PF03793 PASTA domain CS550_RS02390 PF03717 Penicillin-binding Protein dimerisation domain CS550_RS02390 PF00905 Penicillin binding protein transpeptidase domain CS550_RS02395 PF01225 Mur ligase family, catalytic domain CS550_RS02395 PF08245 Mur ligase middle domain CS550_RS02395 PF02875 Mur ligase family, glutamate ligase domain CS550_RS02400 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CS550_RS02400 PF00953 Glycosyl transferase family 4 CS550_RS02405 PF08245 Mur ligase middle domain CS550_RS02405 PF02875 Mur ligase family, glutamate ligase domain CS550_RS02410 PF01098 Cell cycle protein CS550_RS02415 PF04101 Glycosyltransferase family 28 C-terminal domain CS550_RS02415 PF03033 Glycosyltransferase family 28 N-terminal domain CS550_RS02420 PF08245 Mur ligase middle domain CS550_RS02420 PF01225 Mur ligase family, catalytic domain CS550_RS02420 PF02875 Mur ligase family, glutamate ligase domain CS550_RS02435 PF12327 FtsZ family, C-terminal domain CS550_RS02435 PF00091 Tubulin/FtsZ family, GTPase domain CS550_RS02450 PF03458 UPF0126 domain CS550_RS02455 PF02548 Ketopantoate hydroxymethyltransferase CS550_RS02460 PF00117 Glutamine amidotransferase class-I CS550_RS02460 PF00958 GMP synthase C terminal domain CS550_RS02460 PF02540 NAD synthase CS550_RS02465 PF01197 Ribosomal protein L31 CS550_RS02470 PF00595 PDZ domain CS550_RS02475 PF04539 Sigma-70 region 3 CS550_RS02475 PF04542 Sigma-70 region 2 CS550_RS02475 PF00140 Sigma-70 factor, region 1.2 CS550_RS02475 PF04545 Sigma-70, region 4 CS550_RS02475 PF03979 Sigma-70 factor, region 1.1 CS550_RS02480 PF01250 Ribosomal protein S6 CS550_RS02485 PF01084 Ribosomal protein S18 CS550_RS02490 PF03948 Ribosomal protein L9, C-terminal domain CS550_RS02490 PF01281 Ribosomal protein L9, N-terminal domain CS550_RS02500 PF00925 GTP cyclohydrolase II CS550_RS02500 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CS550_RS02515 PF02224 Cytidylate kinase CS550_RS02520 PF02401 LytB protein CS550_RS02555 PF14492 Elongation Factor G, domain II CS550_RS02555 PF00679 Elongation factor G C-terminus CS550_RS02555 PF03144 Elongation factor Tu domain 2 CS550_RS02555 PF00009 Elongation factor Tu GTP binding domain CS550_RS02565 PF10417 C-terminal domain of 1-Cys peroxiredoxin CS550_RS02565 PF00578 AhpC/TSA family CS550_RS02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS550_RS02570 PF13192 Thioredoxin domain CS550_RS02575 PF05362 Lon protease (S16) C-terminal proteolytic domain CS550_RS02575 PF00004 ATPase family associated with various cellular activities (AAA) CS550_RS02575 PF02190 ATP-dependent protease La (LON) substrate-binding domain CS550_RS02590 PF00121 Triosephosphate isomerase CS550_RS02600 PF01227 GTP cyclohydrolase I CS550_RS02615 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CS550_RS02620 PF00005 ABC transporter CS550_RS02625 PF01513 ATP-NAD kinase CS550_RS02630 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CS550_RS02635 PF01618 MotA/TolQ/ExbB proton channel family CS550_RS02650 PF01965 DJ-1/PfpI family CS550_RS02660 PF01554 MatE CS550_RS02665 PF02769 AIR synthase related protein, C-terminal domain CS550_RS02665 PF00586 AIR synthase related protein, N-terminal domain CS550_RS02670 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CS550_RS02675 PF01343 Peptidase family S49 CS550_RS02680 PF07715 TonB-dependent Receptor Plug Domain CS550_RS02680 PF00593 TonB dependent receptor CS550_RS02690 PF00005 ABC transporter CS550_RS02695 PF01032 FecCD transport family CS550_RS02740 PF00468 Ribosomal protein L34 CS550_RS02745 PF02545 Maf-like protein CS550_RS02775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS550_RS02780 PF02929 Beta galactosidase small chain CS550_RS02780 PF00703 Glycosyl hydrolases family 2 CS550_RS02780 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CS550_RS02780 PF02837 Glycosyl hydrolases family 2, sugar binding domain CS550_RS02780 PF16353 Domain of unknown function(DUF4981) CS550_RS02785 PF01636 Phosphotransferase enzyme family CS550_RS02790 PF07715 TonB-dependent Receptor Plug Domain CS550_RS02790 PF00593 TonB dependent receptor CS550_RS02795 PF06180 Cobalt chelatase (CbiK) CS550_RS02805 PF01032 FecCD transport family CS550_RS02810 PF00005 ABC transporter CS550_RS02825 PF00106 short chain dehydrogenase CS550_RS02830 PF03435 Saccharopine dehydrogenase NADP binding domain CS550_RS02830 PF16653 Saccharopine dehydrogenase C-terminal domain CS550_RS02870 PF00005 ABC transporter CS550_RS02880 PF00171 Aldehyde dehydrogenase family CS550_RS02885 PF00465 Iron-containing alcohol dehydrogenase CS550_RS02890 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CS550_RS02890 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CS550_RS02900 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CS550_RS02900 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CS550_RS02905 PF00691 OmpA family CS550_RS02910 PF00691 OmpA family CS550_RS02920 PF00343 Carbohydrate phosphorylase CS550_RS02920 PF11897 Protein of unknown function (DUF3417) CS550_RS02940 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CS550_RS02945 PF02277 Phosphoribosyltransferase CS550_RS02950 PF02654 Cobalamin-5-phosphate synthase CS550_RS02960 PF01177 Asp/Glu/Hydantoin racemase CS550_RS02970 PF07715 TonB-dependent Receptor Plug Domain CS550_RS02970 PF00593 TonB dependent receptor CS550_RS02980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CS550_RS02980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS550_RS02985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS550_RS02985 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CS550_RS02995 PF00117 Glutamine amidotransferase class-I CS550_RS03000 PF03932 CutC family CS550_RS03025 PF18719 ArlS sensor domain CS550_RS03025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS03025 PF00512 His Kinase A (phospho-acceptor) domain CS550_RS03030 PF00072 Response regulator receiver domain CS550_RS03030 PF00486 Transcriptional regulatory protein, C terminal CS550_RS03035 PF00877 NlpC/P60 family CS550_RS03040 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CS550_RS03040 PF07676 WD40-like Beta Propeller Repeat CS550_RS03040 PF00326 Prolyl oligopeptidase family CS550_RS03045 PF13419 Haloacid dehalogenase-like hydrolase CS550_RS03065 PF01820 D-ala D-ala ligase N-terminus CS550_RS03065 PF07478 D-ala D-ala ligase C-terminus CS550_RS03070 PF00849 RNA pseudouridylate synthase CS550_RS03070 PF01479 S4 domain CS550_RS03085 PF00677 Lumazine binding domain CS550_RS03095 PF00266 Aminotransferase class-V CS550_RS03100 PF01351 Ribonuclease HII CS550_RS03110 PF14437 MafB19-like deaminase CS550_RS03115 PF12706 Beta-lactamase superfamily domain CS550_RS03115 PF00753 Metallo-beta-lactamase superfamily CS550_RS03125 PF00588 SpoU rRNA Methylase family CS550_RS03125 PF08032 RNA 2'-O ribose methyltransferase substrate binding CS550_RS03135 PF00989 PAS fold CS550_RS03135 PF00512 His Kinase A (phospho-acceptor) domain CS550_RS03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS03140 PF02954 Bacterial regulatory protein, Fis family CS550_RS03140 PF00072 Response regulator receiver domain CS550_RS03140 PF00158 Sigma-54 interaction domain CS550_RS03155 PF00535 Glycosyl transferase family 2 CS550_RS03170 PF12392 Collagenase CS550_RS03170 PF01136 Peptidase family U32 CS550_RS03180 PF01751 Toprim domain CS550_RS03180 PF13368 Topoisomerase C-terminal repeat CS550_RS03180 PF01131 DNA topoisomerase CS550_RS03185 PF01416 tRNA pseudouridine synthase CS550_RS03195 PF03781 Sulfatase-modifying factor enzyme 1 CS550_RS03210 PF01432 Peptidase family M3 CS550_RS03220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS550_RS03220 PF05698 Bacterial trigger factor protein (TF) C-terminus CS550_RS03220 PF05697 Bacterial trigger factor protein (TF) CS550_RS03225 PF00013 KH domain CS550_RS03225 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CS550_RS03225 PF03725 3' exoribonuclease family, domain 2 CS550_RS03225 PF01138 3' exoribonuclease family, domain 1 CS550_RS03225 PF00575 S1 RNA binding domain CS550_RS03230 PF02446 4-alpha-glucanotransferase CS550_RS03255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CS550_RS03255 PF02770 Acyl-CoA dehydrogenase, middle domain CS550_RS03255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CS550_RS03260 PF00766 Electron transfer flavoprotein FAD-binding domain CS550_RS03260 PF01012 Electron transfer flavoprotein domain CS550_RS03265 PF01012 Electron transfer flavoprotein domain CS550_RS03270 PF00814 Glycoprotease family CS550_RS03290 PF01618 MotA/TolQ/ExbB proton channel family CS550_RS03300 PF01026 TatD related DNase CS550_RS03305 PF00348 Polyprenyl synthetase CS550_RS03330 PF01018 GTP1/OBG CS550_RS03330 PF01926 50S ribosome-binding GTPase CS550_RS03340 PF00156 Phosphoribosyl transferase domain CS550_RS03345 PF06874 Firmicute fructose-1,6-bisphosphatase CS550_RS03350 PF00912 Transglycosylase CS550_RS03350 PF00905 Penicillin binding protein transpeptidase domain CS550_RS03350 PF17092 Penicillin-binding protein OB-like domain CS550_RS03355 PF01027 Inhibitor of apoptosis-promoting Bax1 CS550_RS03360 PF08264 Anticodon-binding domain of tRNA CS550_RS03360 PF09334 tRNA synthetases class I (M) CS550_RS03360 PF13603 Leucyl-tRNA synthetase, Domain 2 CS550_RS03380 PF02272 DHHA1 domain CS550_RS03380 PF00571 CBS domain CS550_RS03380 PF01368 DHH family CS550_RS03380 PF01743 Poly A polymerase head domain CS550_RS03390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS550_RS03390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CS550_RS03395 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CS550_RS03400 PF00753 Metallo-beta-lactamase superfamily CS550_RS03400 PF00258 Flavodoxin CS550_RS03405 PF01790 Prolipoprotein diacylglyceryl transferase CS550_RS03410 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CS550_RS03410 PF01118 Semialdehyde dehydrogenase, NAD binding domain CS550_RS03415 PF01029 NusB family CS550_RS03425 PF07499 RuvA, C-terminal domain CS550_RS03425 PF01330 RuvA N terminal domain CS550_RS03440 PF13808 DDE_Tnp_1-associated CS550_RS03440 PF01609 Transposase DDE domain CS550_RS03510 PF01554 MatE CS550_RS03515 PF12833 Helix-turn-helix domain CS550_RS03515 PF01497 Periplasmic binding protein CS550_RS03525 PF01638 HxlR-like helix-turn-helix CS550_RS03540 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS03540 PF00589 Phage integrase family CS550_RS03545 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS03545 PF00589 Phage integrase family CS550_RS03550 PF00589 Phage integrase family CS550_RS03550 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS03630 PF03432 Relaxase/Mobilisation nuclease domain CS550_RS03665 PF01926 50S ribosome-binding GTPase CS550_RS03665 PF12631 MnmE helical domain CS550_RS03665 PF10396 GTP-binding protein TrmE N-terminus CS550_RS03680 PF00578 AhpC/TSA family CS550_RS03685 PF00154 recA bacterial DNA recombination protein CS550_RS03705 PF00793 DAHP synthetase I family CS550_RS03715 PF01321 Creatinase/Prolidase N-terminal domain CS550_RS03715 PF00557 Metallopeptidase family M24 CS550_RS03720 PF00245 Alkaline phosphatase CS550_RS03735 PF01751 Toprim domain CS550_RS03735 PF01131 DNA topoisomerase CS550_RS03760 PF00005 ABC transporter CS550_RS03760 PF03412 Peptidase C39 family CS550_RS03760 PF00664 ABC transporter transmembrane region CS550_RS03910 PF00425 chorismate binding enzyme CS550_RS03915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS550_RS03920 PF00378 Enoyl-CoA hydratase/isomerase CS550_RS03925 PF13378 Enolase C-terminal domain-like CS550_RS03925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CS550_RS03930 PF00501 AMP-binding enzyme CS550_RS03930 PF13193 AMP-binding enzyme C-terminal domain CS550_RS03995 PF00440 Bacterial regulatory proteins, tetR family CS550_RS04010 PF03063 Prismane/CO dehydrogenase family CS550_RS04015 PF04002 RadC-like JAB domain CS550_RS04035 PF00703 Glycosyl hydrolases family 2 CS550_RS04035 PF02837 Glycosyl hydrolases family 2, sugar binding domain CS550_RS04035 PF16353 Domain of unknown function(DUF4981) CS550_RS04035 PF02929 Beta galactosidase small chain CS550_RS04035 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CS550_RS04040 PF00128 Alpha amylase, catalytic domain CS550_RS04040 PF02806 Alpha amylase, C-terminal all-beta domain CS550_RS04040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CS550_RS04045 PF01734 Patatin-like phospholipase CS550_RS04050 PF02322 Cytochrome bd terminal oxidase subunit II CS550_RS04055 PF01654 Cytochrome bd terminal oxidase subunit I CS550_RS04065 PF17678 Glycosyl hydrolase family 92 N-terminal domain CS550_RS04065 PF07971 Glycosyl hydrolase family 92 CS550_RS04090 PF03313 Serine dehydratase alpha chain CS550_RS04125 PF04138 GtrA-like protein CS550_RS04135 PF01979 Amidohydrolase family CS550_RS04140 PF00535 Glycosyl transferase family 2 CS550_RS04145 PF02687 FtsX-like permease family CS550_RS04145 PF12704 MacB-like periplasmic core domain CS550_RS04150 PF02033 Ribosome-binding factor A CS550_RS04155 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CS550_RS04160 PF00265 Thymidine kinase CS550_RS04170 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CS550_RS04175 PF02954 Bacterial regulatory protein, Fis family CS550_RS04175 PF00072 Response regulator receiver domain CS550_RS04175 PF00158 Sigma-54 interaction domain CS550_RS04195 PF12169 DNA polymerase III subunits gamma and tau domain III CS550_RS04200 PF14492 Elongation Factor G, domain II CS550_RS04200 PF00679 Elongation factor G C-terminus CS550_RS04200 PF03764 Elongation factor G, domain IV CS550_RS04200 PF00009 Elongation factor Tu GTP binding domain CS550_RS04205 PF08497 Radical SAM N-terminal CS550_RS04205 PF04055 Radical SAM superfamily CS550_RS04205 PF11842 Domain of unknown function (DUF3362) CS550_RS04210 PF00288 GHMP kinases N terminal domain CS550_RS04210 PF08544 GHMP kinases C terminal CS550_RS04215 PF00860 Permease family CS550_RS04225 PF00689 Cation transporting ATPase, C-terminus CS550_RS04225 PF00690 Cation transporter/ATPase, N-terminus CS550_RS04250 PF00005 ABC transporter CS550_RS04250 PF13732 Domain of unknown function (DUF4162) CS550_RS04270 PF01597 Glycine cleavage H-protein CS550_RS04275 PF00731 AIR carboxylase CS550_RS04280 PF04551 GcpE protein CS550_RS04285 PF00692 dUTPase CS550_RS04305 PF06574 FAD synthetase CS550_RS04305 PF01687 Riboflavin kinase CS550_RS04310 PF03631 Virulence factor BrkB CS550_RS04320 PF01883 Iron-sulfur cluster assembly protein CS550_RS04320 PF10609 NUBPL iron-transfer P-loop NTPase CS550_RS04325 PF02390 Putative methyltransferase CS550_RS04335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CS550_RS04335 PF09180 Prolyl-tRNA synthetase, C-terminal CS550_RS04335 PF03129 Anticodon binding domain CS550_RS04345 PF01066 CDP-alcohol phosphatidyltransferase CS550_RS04350 PF02666 Phosphatidylserine decarboxylase CS550_RS04360 PF01555 DNA methylase CS550_RS04385 PF02547 Queuosine biosynthesis protein CS550_RS04400 PF02562 PhoH-like protein CS550_RS04405 PF01259 SAICAR synthetase CS550_RS04410 PF01209 ubiE/COQ5 methyltransferase family CS550_RS04415 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CS550_RS04415 PF08501 Shikimate dehydrogenase substrate binding domain CS550_RS04415 PF01488 Shikimate / quinate 5-dehydrogenase CS550_RS04420 PF01103 Surface antigen CS550_RS04420 PF07244 Surface antigen variable number repeat CS550_RS04420 PF17243 POTRA domain TamA domain 1 CS550_RS04455 PF00453 Ribosomal protein L20 CS550_RS04460 PF01632 Ribosomal protein L35 CS550_RS04465 PF05198 Translation initiation factor IF-3, N-terminal domain CS550_RS04465 PF00707 Translation initiation factor IF-3, C-terminal domain CS550_RS04470 PF03129 Anticodon binding domain CS550_RS04470 PF02824 TGS domain CS550_RS04470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CS550_RS04470 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CS550_RS04515 PF00326 Prolyl oligopeptidase family CS550_RS04530 PF00392 Bacterial regulatory proteins, gntR family CS550_RS04545 PF00005 ABC transporter CS550_RS04555 PF00919 Uncharacterized protein family UPF0004 CS550_RS04555 PF01938 TRAM domain CS550_RS04555 PF04055 Radical SAM superfamily CS550_RS04560 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CS550_RS04560 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CS550_RS04570 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CS550_RS04570 PF02896 PEP-utilising enzyme, TIM barrel domain CS550_RS04570 PF00391 PEP-utilising enzyme, mobile domain CS550_RS04595 PF01063 Amino-transferase class IV CS550_RS04600 PF00425 chorismate binding enzyme CS550_RS04610 PF12399 Branched-chain amino acid ATP-binding cassette transporter CS550_RS04610 PF00005 ABC transporter CS550_RS04615 PF00005 ABC transporter CS550_RS04625 PF02272 DHHA1 domain CS550_RS04625 PF01411 tRNA synthetases class II (A) CS550_RS04625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CS550_RS04635 PF02653 Branched-chain amino acid transport system / permease component CS550_RS04655 PF02405 Permease MlaE CS550_RS04660 PF00005 ABC transporter CS550_RS04660 PF09383 NIL domain CS550_RS04670 PF17760 UvrA interaction domain CS550_RS04670 PF17755 UvrA DNA-binding domain CS550_RS04670 PF00005 ABC transporter CS550_RS04680 PF13361 UvrD-like helicase C-terminal domain CS550_RS04680 PF00580 UvrD/REP helicase N-terminal domain CS550_RS04685 PF00884 Sulfatase CS550_RS04690 PF02863 Arginine repressor, C-terminal domain CS550_RS04690 PF01316 Arginine repressor, DNA binding domain CS550_RS04695 PF01699 Sodium/calcium exchanger protein CS550_RS04705 PF07670 Nucleoside recognition CS550_RS04705 PF17910 FeoB cytosolic helical domain CS550_RS04705 PF07664 Ferrous iron transport protein B C terminus CS550_RS04705 PF02421 Ferrous iron transport protein B CS550_RS04725 PF01520 N-acetylmuramoyl-L-alanine amidase CS550_RS04745 PF13411 MerR HTH family regulatory protein CS550_RS04750 PF00027 Cyclic nucleotide-binding domain CS550_RS04750 PF13545 Crp-like helix-turn-helix domain CS550_RS04760 PF00648 Calpain family cysteine protease CS550_RS04765 PF01242 6-pyruvoyl tetrahydropterin synthase CS550_RS04770 PF04055 Radical SAM superfamily CS550_RS04775 PF00691 OmpA family CS550_RS04775 PF01389 OmpA-like transmembrane domain CS550_RS04790 PF02589 LUD domain CS550_RS04795 PF13183 4Fe-4S dicluster domain CS550_RS04795 PF02589 LUD domain CS550_RS04795 PF11870 Domain of unknown function (DUF3390) CS550_RS04800 PF02754 Cysteine-rich domain CS550_RS04840 PF07685 CobB/CobQ-like glutamine amidotransferase domain CS550_RS04840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CS550_RS04845 PF01923 Cobalamin adenosyltransferase CS550_RS04850 PF07685 CobB/CobQ-like glutamine amidotransferase domain CS550_RS04850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CS550_RS04855 PF00155 Aminotransferase class I and II CS550_RS04860 PF03186 CobD/Cbib protein CS550_RS04865 PF00849 RNA pseudouridylate synthase CS550_RS04865 PF01479 S4 domain CS550_RS04885 PF00465 Iron-containing alcohol dehydrogenase CS550_RS04890 PF00534 Glycosyl transferases group 1 CS550_RS04905 PF00501 AMP-binding enzyme CS550_RS04915 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CS550_RS04915 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CS550_RS04915 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CS550_RS04930 PF00534 Glycosyl transferases group 1 CS550_RS04930 PF13439 Glycosyltransferase Family 4 CS550_RS04945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CS550_RS04960 PF02397 Bacterial sugar transferase CS550_RS04965 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS550_RS04980 PF08264 Anticodon-binding domain of tRNA CS550_RS04980 PF00133 tRNA synthetases class I (I, L, M and V) CS550_RS04980 PF10458 Valyl tRNA synthetase tRNA binding arm CS550_RS04995 PF00317 Ribonucleotide reductase, all-alpha domain CS550_RS04995 PF02867 Ribonucleotide reductase, barrel domain CS550_RS04995 PF03477 ATP cone domain CS550_RS05000 PF02601 Exonuclease VII, large subunit CS550_RS05000 PF13742 OB-fold nucleic acid binding domain CS550_RS05005 PF01037 Lrp/AsnC ligand binding domain CS550_RS05005 PF13404 AsnC-type helix-turn-helix domain CS550_RS05010 PF00860 Permease family CS550_RS05020 PF01923 Cobalamin adenosyltransferase CS550_RS05025 PF08328 Adenylosuccinate lyase C-terminal CS550_RS05025 PF00206 Lyase CS550_RS05030 PF01479 S4 domain CS550_RS05030 PF00849 RNA pseudouridylate synthase CS550_RS05035 PF00152 tRNA synthetases class II (D, K and N) CS550_RS05035 PF01336 OB-fold nucleic acid binding domain CS550_RS05045 PF00004 ATPase family associated with various cellular activities (AAA) CS550_RS05045 PF07724 AAA domain (Cdc48 subfamily) CS550_RS05045 PF17871 AAA lid domain CS550_RS05045 PF02861 Clp amino terminal domain, pathogenicity island component CS550_RS05045 PF10431 C-terminal, D2-small domain, of ClpB protein CS550_RS05050 PF01554 MatE CS550_RS05055 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CS550_RS05055 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CS550_RS05060 PF00448 SRP54-type protein, GTPase domain CS550_RS05060 PF02881 SRP54-type protein, helical bundle domain CS550_RS05060 PF02978 Signal peptide binding domain CS550_RS05065 PF02261 Aspartate decarboxylase CS550_RS05070 PF01225 Mur ligase family, catalytic domain CS550_RS05070 PF02875 Mur ligase family, glutamate ligase domain CS550_RS05070 PF08245 Mur ligase middle domain CS550_RS05075 PF00309 Sigma-54 factor, Activator interacting domain (AID) CS550_RS05075 PF04963 Sigma-54 factor, core binding domain CS550_RS05075 PF04552 Sigma-54, DNA binding domain CS550_RS05080 PF05175 Methyltransferase small domain CS550_RS05085 PF00004 ATPase family associated with various cellular activities (AAA) CS550_RS05085 PF16193 AAA C-terminal domain CS550_RS05085 PF12002 MgsA AAA+ ATPase C terminal CS550_RS05095 PF00474 Sodium:solute symporter family CS550_RS05105 PF01380 SIS domain CS550_RS05125 PF00842 Alanine racemase, C-terminal domain CS550_RS05125 PF01168 Alanine racemase, N-terminal domain CS550_RS05135 PF05958 tRNA (Uracil-5-)-methyltransferase CS550_RS05135 PF01938 TRAM domain CS550_RS05140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CS550_RS05140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CS550_RS05140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CS550_RS05140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CS550_RS05165 PF00072 Response regulator receiver domain CS550_RS05165 PF00486 Transcriptional regulatory protein, C terminal CS550_RS05175 PF16199 Radical_SAM C-terminal domain CS550_RS05175 PF04055 Radical SAM superfamily CS550_RS05185 PF00578 AhpC/TSA family CS550_RS05195 PF01515 Phosphate acetyl/butaryl transferase CS550_RS05200 PF00871 Acetokinase family CS550_RS05205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CS550_RS05205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CS550_RS05210 PF00378 Enoyl-CoA hydratase/isomerase CS550_RS05215 PF01012 Electron transfer flavoprotein domain CS550_RS05215 PF00766 Electron transfer flavoprotein FAD-binding domain CS550_RS05220 PF01012 Electron transfer flavoprotein domain CS550_RS05225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CS550_RS05225 PF02770 Acyl-CoA dehydrogenase, middle domain CS550_RS05225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CS550_RS05230 PF01144 Coenzyme A transferase CS550_RS05235 PF02310 B12 binding domain CS550_RS05235 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase CS550_RS05240 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit CS550_RS05245 PF00488 MutS domain V CS550_RS05245 PF05190 MutS family domain IV CS550_RS05245 PF05192 MutS domain III CS550_RS05245 PF05188 MutS domain II CS550_RS05245 PF01624 MutS domain I CS550_RS05255 PF12544 Lysine-2,3-aminomutase CS550_RS05255 PF04055 Radical SAM superfamily CS550_RS05265 PF05853 beta-keto acid cleavage enzyme CS550_RS05270 PF03061 Thioesterase superfamily CS550_RS05275 PF01144 Coenzyme A transferase CS550_RS05280 PF01180 Dihydroorotate dehydrogenase CS550_RS05285 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CS550_RS05295 PF13808 DDE_Tnp_1-associated CS550_RS05295 PF01609 Transposase DDE domain CS550_RS05305 PF13180 PDZ domain CS550_RS05305 PF03572 Peptidase family S41 CS550_RS05315 PF00005 ABC transporter CS550_RS05315 PF00664 ABC transporter transmembrane region CS550_RS05320 PF00664 ABC transporter transmembrane region CS550_RS05320 PF08021 Siderophore-interacting FAD-binding domain CS550_RS05320 PF04954 Siderophore-interacting protein CS550_RS05320 PF00005 ABC transporter CS550_RS05345 PF03062 MBOAT, membrane-bound O-acyltransferase family CS550_RS05370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS550_RS05370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS550_RS05375 PF00155 Aminotransferase class I and II CS550_RS05420 PF00012 Hsp70 protein CS550_RS05435 PF01321 Creatinase/Prolidase N-terminal domain CS550_RS05435 PF00557 Metallopeptidase family M24 CS550_RS05440 PF00132 Bacterial transferase hexapeptide (six repeats) CS550_RS05450 PF01693 Caulimovirus viroplasmin CS550_RS05480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS550_RS05480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS550_RS05485 PF00106 short chain dehydrogenase CS550_RS05500 PF01464 Transglycosylase SLT domain CS550_RS05500 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS550_RS05505 PF12848 ABC transporter CS550_RS05505 PF16326 ABC transporter C-terminal domain CS550_RS05505 PF00005 ABC transporter CS550_RS05510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CS550_RS05525 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CS550_RS05525 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CS550_RS05530 PF01370 NAD dependent epimerase/dehydratase family CS550_RS05540 PF00196 Bacterial regulatory proteins, luxR family CS550_RS05540 PF00072 Response regulator receiver domain CS550_RS05545 PF00849 RNA pseudouridylate synthase CS550_RS05545 PF01479 S4 domain CS550_RS05555 PF00440 Bacterial regulatory proteins, tetR family CS550_RS05555 PF08361 MAATS-type transcriptional repressor, C-terminal region CS550_RS05565 PF00679 Elongation factor G C-terminus CS550_RS05565 PF00009 Elongation factor Tu GTP binding domain CS550_RS05565 PF03144 Elongation factor Tu domain 2 CS550_RS05565 PF06421 GTP-binding protein LepA C-terminus CS550_RS05570 PF00772 DnaB-like helicase N terminal domain CS550_RS05570 PF03796 DnaB-like helicase C terminal domain CS550_RS05585 PF01411 tRNA synthetases class II (A) CS550_RS05585 PF02272 DHHA1 domain CS550_RS05585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CS550_RS05590 PF01761 3-dehydroquinate synthase CS550_RS05605 PF01553 Acyltransferase CS550_RS05620 PF12704 MacB-like periplasmic core domain CS550_RS05620 PF02687 FtsX-like permease family CS550_RS05625 PF03120 NAD-dependent DNA ligase OB-fold domain CS550_RS05625 PF01653 NAD-dependent DNA ligase adenylation domain CS550_RS05625 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CS550_RS05625 PF12826 Helix-hairpin-helix motif CS550_RS05625 PF00533 BRCA1 C Terminus (BRCT) domain CS550_RS05635 PF02132 RecR protein CS550_RS05635 PF13662 Toprim domain CS550_RS05640 PF00575 S1 RNA binding domain CS550_RS05640 PF10150 Ribonuclease E/G family CS550_RS05645 PF00216 Bacterial DNA-binding protein CS550_RS05655 PF03477 ATP cone domain CS550_RS05655 PF13597 Anaerobic ribonucleoside-triphosphate reductase CS550_RS05660 PF01609 Transposase DDE domain CS550_RS05660 PF13808 DDE_Tnp_1-associated CS550_RS05710 PF00171 Aldehyde dehydrogenase family CS550_RS05720 PF00202 Aminotransferase class-III CS550_RS05725 PF08207 Elongation factor P (EF-P) KOW-like domain CS550_RS05725 PF01132 Elongation factor P (EF-P) OB domain CS550_RS05725 PF09285 Elongation factor P, C-terminal CS550_RS05740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CS550_RS05740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CS550_RS05740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CS550_RS05745 PF00266 Aminotransferase class-V CS550_RS05750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS550_RS05750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS550_RS05750 PF01842 ACT domain CS550_RS05760 PF00488 MutS domain V CS550_RS05760 PF01713 Smr domain CS550_RS05770 PF10459 Peptidase S46 CS550_RS05775 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CS550_RS05775 PF02585 GlcNAc-PI de-N-acetylase CS550_RS05780 PF00210 Ferritin-like domain CS550_RS05785 PF16363 GDP-mannose 4,6 dehydratase CS550_RS05790 PF01370 NAD dependent epimerase/dehydratase family CS550_RS05795 PF01063 Amino-transferase class IV CS550_RS06000 PF03412 Peptidase C39 family CS550_RS06000 PF00664 ABC transporter transmembrane region CS550_RS06000 PF00005 ABC transporter CS550_RS06015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CS550_RS06015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CS550_RS06020 PF00440 Bacterial regulatory proteins, tetR family CS550_RS06020 PF17932 Tetracyclin repressor-like, C-terminal domain CS550_RS06030 PF01751 Toprim domain CS550_RS06030 PF01131 DNA topoisomerase CS550_RS06070 PF00589 Phage integrase family CS550_RS06070 PF14659 Phage integrase, N-terminal SAM-like domain CS550_RS06080 PF07670 Nucleoside recognition CS550_RS06080 PF07664 Ferrous iron transport protein B C terminus CS550_RS06080 PF17910 FeoB cytosolic helical domain CS550_RS06080 PF04023 FeoA domain CS550_RS06080 PF02421 Ferrous iron transport protein B CS550_RS06100 PF00575 S1 RNA binding domain CS550_RS06130 PF02347 Glycine cleavage system P-protein CS550_RS06135 PF00753 Metallo-beta-lactamase superfamily CS550_RS06140 PF02527 rRNA small subunit methyltransferase G CS550_RS06150 PF06508 Queuosine biosynthesis protein QueC CS550_RS06180 PF03577 Peptidase family C69 CS550_RS06190 PF01264 Chorismate synthase CS550_RS06195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS550_RS06210 PF08281 Sigma-70, region 4 CS550_RS06210 PF04542 Sigma-70 region 2 CS550_RS06225 PF01268 Formate--tetrahydrofolate ligase CS550_RS06230 PF13638 PIN domain CS550_RS06230 PF02562 PhoH-like protein CS550_RS06235 PF02075 Crossover junction endodeoxyribonuclease RuvC CS550_RS06245 PF10365 Domain of unknown function (DUF2436) CS550_RS06245 PF10365 Domain of unknown function (DUF2436) CS550_RS06245 PF01364 Peptidase family C25 CS550_RS06245 PF08126 Propeptide_C25 CS550_RS06245 PF07675 Cleaved Adhesin Domain CS550_RS06245 PF07675 Cleaved Adhesin Domain CS550_RS06245 PF03785 Peptidase family C25, C terminal ig-like domain CS550_RS06245 PF03785 Peptidase family C25, C terminal ig-like domain CS550_RS06245 PF01364 Peptidase family C25 CS550_RS06245 PF08126 Propeptide_C25 CS550_RS06250 PF00155 Aminotransferase class I and II CS550_RS06255 PF13380 CoA binding domain CS550_RS06255 PF13607 Succinyl-CoA ligase like flavodoxin domain CS550_RS06270 PF01741 Large-conductance mechanosensitive channel, MscL CS550_RS06275 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CS550_RS06275 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CS550_RS06280 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CS550_RS06280 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CS550_RS06280 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CS550_RS06285 PF02233 NAD(P) transhydrogenase beta subunit CS550_RS06295 PF01145 SPFH domain / Band 7 family CS550_RS06310 PF00717 Peptidase S24-like CS550_RS06315 PF11799 impB/mucB/samB family C-terminal domain CS550_RS06315 PF13438 Domain of unknown function (DUF4113) CS550_RS06315 PF00817 impB/mucB/samB family CS550_RS06315 PF11798 IMS family HHH motif CS550_RS06320 PF02652 L-lactate permease CS550_RS06330 PF01565 FAD binding domain CS550_RS06330 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CS550_RS06335 PF12706 Beta-lactamase superfamily domain CS550_RS06335 PF03099 Biotin/lipoate A/B protein ligase family CS550_RS06350 PF13439 Glycosyltransferase Family 4 CS550_RS06350 PF00534 Glycosyl transferases group 1 CS550_RS06355 PF14489 QueF-like protein CS550_RS06360 PF00781 Diacylglycerol kinase catalytic domain CS550_RS06375 PF00156 Phosphoribosyl transferase domain CS550_RS06380 PF00795 Carbon-nitrogen hydrolase CS550_RS06405 PF13302 Acetyltransferase (GNAT) domain CS550_RS06415 PF02844 Phosphoribosylglycinamide synthetase, N domain CS550_RS06415 PF02843 Phosphoribosylglycinamide synthetase, C domain CS550_RS06415 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CS550_RS06420 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CS550_RS06420 PF00326 Prolyl oligopeptidase family CS550_RS06425 PF01170 Putative RNA methylase family UPF0020 CS550_RS06425 PF02926 THUMP domain CS550_RS06435 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CS550_RS06435 PF13288 DXP reductoisomerase C-terminal domain CS550_RS06435 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CS550_RS06440 PF01782 RimM N-terminal domain CS550_RS06445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CS550_RS06455 PF00342 Phosphoglucose isomerase CS550_RS06460 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CS550_RS06460 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CS550_RS06465 PF00152 tRNA synthetases class II (D, K and N) CS550_RS06465 PF01336 OB-fold nucleic acid binding domain CS550_RS06470 PF01048 Phosphorylase superfamily CS550_RS06495 PF14815 NUDIX domain CS550_RS06495 PF00730 HhH-GPD superfamily base excision DNA repair protein CS550_RS06500 PF00005 ABC transporter CS550_RS06505 PF00005 ABC transporter CS550_RS06525 PF04851 Type III restriction enzyme, res subunit CS550_RS06525 PF04851 Type III restriction enzyme, res subunit CS550_RS06530 PF01555 DNA methylase CS550_RS06540 PF00176 SNF2 family N-terminal domain CS550_RS06540 PF00271 Helicase conserved C-terminal domain CS550_RS06555 PF00521 DNA gyrase/topoisomerase IV, subunit A CS550_RS06555 PF03989 DNA gyrase C-terminal domain, beta-propeller CS550_RS06585 PF01098 Cell cycle protein CS550_RS06590 PF03717 Penicillin-binding Protein dimerisation domain CS550_RS06590 PF00905 Penicillin binding protein transpeptidase domain CS550_RS06610 PF01808 AICARFT/IMPCHase bienzyme CS550_RS06610 PF02142 MGS-like domain CS550_RS06630 PF01212 Beta-eliminating lyase CS550_RS06665 PF01545 Cation efflux family CS550_RS06675 PF06826 Predicted Permease Membrane Region CS550_RS06675 PF02080 TrkA-C domain CS550_RS06695 PF03060 Nitronate monooxygenase CS550_RS06705 PF05683 Fumarase C-terminus CS550_RS06705 PF05681 Fumarate hydratase (Fumerase) CS550_RS06710 PF12169 DNA polymerase III subunits gamma and tau domain III CS550_RS06720 PF00037 4Fe-4S binding domain CS550_RS06725 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CS550_RS06735 PF04371 Porphyromonas-type peptidyl-arginine deiminase CS550_RS06740 PF01640 Peptidase C10 family CS550_RS06740 PF13734 Spi protease inhibitor CS550_RS06745 PF00885 6,7-dimethyl-8-ribityllumazine synthase CS550_RS06755 PF00196 Bacterial regulatory proteins, luxR family CS550_RS06755 PF00072 Response regulator receiver domain CS550_RS06760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CS550_RS06760 PF00072 Response regulator receiver domain CS550_RS06760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS06760 PF00512 His Kinase A (phospho-acceptor) domain CS550_RS06760 PF01627 Hpt domain CS550_RS06760 PF00672 HAMP domain CS550_RS06770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CS550_RS06835 PF02673 Bacitracin resistance protein BacA CS550_RS06840 PF01509 TruB family pseudouridylate synthase (N terminal domain) CS550_RS06840 PF16198 tRNA pseudouridylate synthase B C-terminal domain CS550_RS06845 PF02547 Queuosine biosynthesis protein CS550_RS06850 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CS550_RS06855 PF01136 Peptidase family U32 CS550_RS06865 PF03883 Peroxide stress protein YaaA CS550_RS06870 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CS550_RS06870 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CS550_RS06885 PF13734 Spi protease inhibitor CS550_RS06885 PF01640 Peptidase C10 family CS550_RS06900 PF00593 TonB dependent receptor CS550_RS06900 PF07715 TonB-dependent Receptor Plug Domain CS550_RS06905 PF11965 Domain of unknown function (DUF3479) CS550_RS06905 PF02514 CobN/Magnesium Chelatase CS550_RS06925 PF01571 Aminomethyltransferase folate-binding domain CS550_RS06925 PF08669 Glycine cleavage T-protein C-terminal barrel domain CS550_RS06930 PF16363 GDP-mannose 4,6 dehydratase CS550_RS06935 PF04321 RmlD substrate binding domain CS550_RS06940 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CS550_RS06945 PF00483 Nucleotidyl transferase CS550_RS06960 PF00749 tRNA synthetases class I (E and Q), catalytic domain CS550_RS06975 PF00753 Metallo-beta-lactamase superfamily CS550_RS06975 PF16123 Hydroxyacylglutathione hydrolase C-terminus CS550_RS06980 PF01925 Sulfite exporter TauE/SafE CS550_RS06985 PF00027 Cyclic nucleotide-binding domain CS550_RS06985 PF13545 Crp-like helix-turn-helix domain CS550_RS06990 PF00890 FAD binding domain CS550_RS06990 PF02910 Fumarate reductase flavoprotein C-term CS550_RS06995 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CS550_RS06995 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CS550_RS07000 PF02445 Quinolinate synthetase A protein CS550_RS07005 PF07726 ATPase family associated with various cellular activities (AAA) CS550_RS07005 PF17863 AAA lid domain CS550_RS07010 PF01882 Protein of unknown function DUF58 CS550_RS07020 PF00092 von Willebrand factor type A domain CS550_RS07045 PF01569 PAP2 superfamily CS550_RS07050 PF02457 DisA bacterial checkpoint controller nucleotide-binding CS550_RS07055 PF00809 Pterin binding enzyme CS550_RS07070 PF01966 HD domain CS550_RS07070 PF07697 7TM-HD extracellular CS550_RS07070 PF07698 7TM receptor with intracellular HD hydrolase CS550_RS07075 PF01202 Shikimate kinase CS550_RS07085 PF00834 Ribulose-phosphate 3 epimerase family CS550_RS07090 PF08264 Anticodon-binding domain of tRNA CS550_RS07090 PF00133 tRNA synthetases class I (I, L, M and V) CS550_RS07095 PF01258 Prokaryotic dksA/traR C4-type zinc finger CS550_RS07100 PF01252 Signal peptidase (SPase) II CS550_RS07115 PF03099 Biotin/lipoate A/B protein ligase family CS550_RS07115 PF02237 Biotin protein ligase C terminal domain CS550_RS07115 PF08279 HTH domain CS550_RS07125 PF01725 Ham1 family CS550_RS07135 PF03051 Peptidase C1-like family CS550_RS07140 PF07885 Ion channel CS550_RS07160 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CS550_RS07165 PF00364 Biotin-requiring enzyme CS550_RS07180 PF01039 Carboxyl transferase domain CS550_RS07195 PF00890 FAD binding domain CS550_RS07195 PF02910 Fumarate reductase flavoprotein C-term CS550_RS07210 PF00403 Heavy-metal-associated domain CS550_RS07215 PF00403 Heavy-metal-associated domain CS550_RS07220 PF01451 Low molecular weight phosphotyrosine protein phosphatase CS550_RS07225 PF01554 MatE CS550_RS07230 PF00578 AhpC/TSA family CS550_RS07235 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CS550_RS07235 PF17854 FtsK alpha domain CS550_RS07235 PF09397 Ftsk gamma domain CS550_RS07235 PF01580 FtsK/SpoIIIE family CS550_RS07250 PF00288 GHMP kinases N terminal domain CS550_RS07250 PF10509 Galactokinase galactose-binding signature CS550_RS07250 PF08544 GHMP kinases C terminal CS550_RS07255 PF01263 Aldose 1-epimerase CS550_RS07305 PF00521 DNA gyrase/topoisomerase IV, subunit A CS550_RS07325 PF04301 Protein of unknown function (DUF452) CS550_RS07350 PF13396 Phospholipase_D-nuclease N-terminal CS550_RS07350 PF13091 PLD-like domain CS550_RS07355 PF13291 ACT domain CS550_RS07355 PF02824 TGS domain CS550_RS07355 PF04607 Region found in RelA / SpoT proteins CS550_RS07370 PF03061 Thioesterase superfamily CS550_RS07375 PF01427 D-ala-D-ala dipeptidase CS550_RS07400 PF01642 Methylmalonyl-CoA mutase CS550_RS07405 PF01642 Methylmalonyl-CoA mutase CS550_RS07405 PF02310 B12 binding domain CS550_RS07425 PF04542 Sigma-70 region 2 CS550_RS07425 PF08281 Sigma-70, region 4 CS550_RS07435 PF00005 ABC transporter CS550_RS07440 PF12704 MacB-like periplasmic core domain CS550_RS07440 PF00005 ABC transporter CS550_RS07440 PF02687 FtsX-like permease family CS550_RS07445 PF02687 FtsX-like permease family CS550_RS07445 PF00005 ABC transporter CS550_RS07445 PF12704 MacB-like periplasmic core domain CS550_RS07455 PF02321 Outer membrane efflux protein CS550_RS07515 PF01293 Phosphoenolpyruvate carboxykinase CS550_RS07520 PF00162 Phosphoglycerate kinase CS550_RS07530 PF00005 ABC transporter CS550_RS07540 PF00534 Glycosyl transferases group 1 CS550_RS07540 PF13579 Glycosyl transferase 4-like domain CS550_RS07565 PF01230 HIT domain CS550_RS07570 PF03449 Transcription elongation factor, N-terminal CS550_RS07570 PF01272 Transcription elongation factor, GreA/GreB, C-term CS550_RS07575 PF01300 Telomere recombination CS550_RS07585 PF00005 ABC transporter CS550_RS07590 PF00581 Rhodanese-like domain CS550_RS07590 PF00899 ThiF family CS550_RS07595 PF02618 YceG-like family CS550_RS07620 PF07722 Peptidase C26 CS550_RS07625 PF00204 DNA gyrase B CS550_RS07625 PF00986 DNA gyrase B subunit, carboxyl terminus CS550_RS07625 PF01751 Toprim domain CS550_RS07625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS07630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS550_RS07630 PF03819 MazG nucleotide pyrophosphohydrolase domain CS550_RS07640 PF00849 RNA pseudouridylate synthase CS550_RS07640 PF01479 S4 domain CS550_RS07680 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CS550_RS07680 PF01243 Pyridoxamine 5'-phosphate oxidase CS550_RS07700 PF00005 ABC transporter CS550_RS07700 PF00664 ABC transporter transmembrane region CS550_RS07710 PF08206 Ribonuclease B OB domain CS550_RS07710 PF00773 RNB domain CS550_RS07710 PF00575 S1 RNA binding domain CS550_RS07710 PF17876 Cold shock domain CS550_RS07725 PF01649 Ribosomal protein S20 CS550_RS07735 PF00814 Glycoprotease family CS550_RS07740 PF18146 Damage-inducible protein CinA KH domain CS550_RS07740 PF00994 Probable molybdopterin binding domain CS550_RS07740 PF02464 Competence-damaged protein CS550_RS07755 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CS550_RS07760 PF08534 Redoxin CS550_RS07765 PF01596 O-methyltransferase CS550_RS07770 PF01220 Dehydroquinase class II CS550_RS07775 PF00589 Phage integrase family CS550_RS07775 PF02899 Phage integrase, N-terminal SAM-like domain CS550_RS07790 PF09297 NADH pyrophosphatase zinc ribbon domain CS550_RS07790 PF00293 NUDIX domain CS550_RS07795 PF00480 ROK family CS550_RS07805 PF02541 Ppx/GppA phosphatase family CS550_RS07810 PF10415 Fumarase C C-terminus CS550_RS07810 PF00206 Lyase CS550_RS07815 PF00793 DAHP synthetase I family CS550_RS07820 PF00485 Phosphoribulokinase / Uridine kinase family CS550_RS07830 PF00085 Thioredoxin CS550_RS07845 PF01595 Cyclin M transmembrane N-terminal domain CS550_RS07845 PF03471 Transporter associated domain CS550_RS07845 PF00571 CBS domain CS550_RS07850 PF00436 Single-strand binding protein family CS550_RS07855 PF03466 LysR substrate binding domain CS550_RS07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS550_RS07860 PF03372 Endonuclease/Exonuclease/phosphatase family CS550_RS07870 PF00750 tRNA synthetases class I (R) CS550_RS07870 PF05746 DALR anticodon binding domain CS550_RS07870 PF03485 Arginyl tRNA synthetase N terminal domain CS550_RS07890 PF00579 tRNA synthetases class I (W and Y) CS550_RS07905 PF01458 Uncharacterized protein family (UPF0051) CS550_RS07910 PF00005 ABC transporter CS550_RS07915 PF01458 Uncharacterized protein family (UPF0051) CS550_RS07925 PF04760 Translation initiation factor IF-2, N-terminal region CS550_RS07925 PF11987 Translation-initiation factor 2 CS550_RS07925 PF00009 Elongation factor Tu GTP binding domain CS550_RS07930 PF00575 S1 RNA binding domain CS550_RS07930 PF13184 NusA-like KH domain CS550_RS07930 PF08529 NusA N-terminal domain CS550_RS07935 PF02576 RimP N-terminal domain CS550_RS07945 PF02436 Conserved carboxylase domain CS550_RS07945 PF00682 HMGL-like CS550_RS07975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS550_RS07985 PF13419 Haloacid dehalogenase-like hydrolase CS550_RS07990 PF03167 Uracil DNA glycosylase superfamily CS550_RS08000 PF01471 Putative peptidoglycan binding domain CS550_RS08000 PF13180 PDZ domain CS550_RS08000 PF03572 Peptidase family S41 CS550_RS08020 PF18496 Collagenase G catalytic helper subdomain CS550_RS08020 PF08453 Peptidase family M9 N-terminal CS550_RS08020 PF01752 Collagenase CS550_RS08025 PF07075 Protein of unknown function (DUF1343) CS550_RS08030 PF00923 Transaldolase/Fructose-6-phosphate aldolase CS550_RS08045 PF18073 Rubredoxin metal binding domain CS550_RS08055 PF01914 MarC family integral membrane protein CS550_RS08110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CS550_RS08110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS550_RS08115 PF05175 Methyltransferase small domain CS550_RS08120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS550_RS08125 PF01888 CbiD CS550_RS08130 PF01226 Formate/nitrite transporter CS550_RS08140 PF16658 Class II release factor RF3, C-terminal domain CS550_RS08140 PF00009 Elongation factor Tu GTP binding domain CS550_RS08140 PF03144 Elongation factor Tu domain 2 CS550_RS08160 PF00825 Ribonuclease P CS550_RS08165 PF01809 Putative membrane protein insertion efficiency factor CS550_RS08170 PF01026 TatD related DNase CS550_RS08175 PF05656 Protein of unknown function (DUF805) CS550_RS08180 PF05193 Peptidase M16 inactive domain CS550_RS08180 PF00675 Insulinase (Peptidase family M16) CS550_RS08185 PF02915 Rubrerythrin CS550_RS08195 PF03938 Outer membrane protein (OmpH-like) CS550_RS08200 PF07244 Surface antigen variable number repeat CS550_RS08200 PF01103 Surface antigen CS550_RS08205 PF01255 Putative undecaprenyl diphosphate synthase CS550_RS08220 PF01364 Peptidase family C25 CS550_RS08220 PF08126 Propeptide_C25 CS550_RS08220 PF03785 Peptidase family C25, C terminal ig-like domain CS550_RS08220 PF10365 Domain of unknown function (DUF2436) CS550_RS08220 PF07675 Cleaved Adhesin Domain CS550_RS08230 PF07715 TonB-dependent Receptor Plug Domain CS550_RS08230 PF00593 TonB dependent receptor CS550_RS08240 PF06321 Major fimbrial subunit protein (FimA) CS550_RS08245 PF08842 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 CS550_RS08250 PF08842 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 CS550_RS08255 PF15495 Major fimbrial subunit protein type IV, Fimbrillin, C-terminal CS550_RS08265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CS550_RS08265 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS550_RS08280 PF00149 Calcineurin-like phosphoesterase CS550_RS08280 PF02872 5'-nucleotidase, C-terminal domain CS550_RS08285 PF09334 tRNA synthetases class I (M) CS550_RS08285 PF01588 Putative tRNA binding domain CS550_RS08295 PF01386 Ribosomal L25p family CS550_RS08295 PF14693 Ribosomal protein TL5, C-terminal domain CS550_RS08300 PF01195 Peptidyl-tRNA hydrolase CS550_RS08305 PF01479 S4 domain CS550_RS08315 PF00365 Phosphofructokinase CS550_RS08320 PF08281 Sigma-70, region 4 CS550_RS08320 PF04542 Sigma-70 region 2 CS550_RS08330 PF01431 Peptidase family M13 CS550_RS08330 PF05649 Peptidase family M13 CS550_RS08335 PF00156 Phosphoribosyl transferase domain CS550_RS08340 PF02631 RecX family CS550_RS08345 PF17827 PrmC N-terminal domain CS550_RS08345 PF05175 Methyltransferase small domain CS550_RS08350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CS550_RS08350 PF01872 RibD C-terminal domain CS550_RS08355 PF01336 OB-fold nucleic acid binding domain CS550_RS08355 PF00152 tRNA synthetases class II (D, K and N) CS550_RS08355 PF02938 GAD domain CS550_RS08360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CS550_RS08365 PF02881 SRP54-type protein, helical bundle domain CS550_RS08365 PF00448 SRP54-type protein, GTPase domain CS550_RS08370 PF00919 Uncharacterized protein family UPF0004 CS550_RS08370 PF04055 Radical SAM superfamily CS550_RS08370 PF18693 TRAM domain CS550_RS08380 PF00072 Response regulator receiver domain CS550_RS08380 PF02954 Bacterial regulatory protein, Fis family CS550_RS08380 PF00158 Sigma-54 interaction domain CS550_RS08400 PF04371 Porphyromonas-type peptidyl-arginine deiminase CS550_RS08410 PF13614 AAA domain CS550_RS08415 PF02195 ParB-like nuclease domain CS550_RS08415 PF17762 HTH domain found in ParB protein CS550_RS08425 PF05257 CHAP domain CS550_RS08425 PF01476 LysM domain CS550_RS08430 PF00698 Acyl transferase domain CS550_RS08435 PF07687 Peptidase dimerisation domain CS550_RS08435 PF01546 Peptidase family M20/M25/M40 CS550_RS08445 PF00398 Ribosomal RNA adenine dimethylase CS550_RS08450 PF00571 CBS domain CS550_RS08450 PF03448 MgtE intracellular N domain CS550_RS08450 PF01769 Divalent cation transporter CS550_RS08470 PF00300 Histidine phosphatase superfamily (branch 1) CS550_RS08475 PF00534 Glycosyl transferases group 1 CS550_RS08485 PF00762 Ferrochelatase CS550_RS08500 PF09186 Domain of unknown function (DUF1949) CS550_RS08500 PF01205 Uncharacterized protein family UPF0029 CS550_RS08510 PF00216 Bacterial DNA-binding protein CS550_RS08515 PF02350 UDP-N-acetylglucosamine 2-epimerase CS550_RS08520 PF03808 Glycosyl transferase WecB/TagA/CpsF family CS550_RS08525 PF00535 Glycosyl transferase family 2 CS550_RS08555 PF13439 Glycosyltransferase Family 4 CS550_RS08555 PF00534 Glycosyl transferases group 1 CS550_RS08585 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CS550_RS08585 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CS550_RS08585 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CS550_RS08590 PF00953 Glycosyl transferase family 4 CS550_RS08600 PF01751 Toprim domain CS550_RS08600 PF01131 DNA topoisomerase CS550_RS08655 PF00202 Aminotransferase class-III CS550_RS08660 PF06968 Biotin and Thiamin Synthesis associated domain CS550_RS08660 PF04055 Radical SAM superfamily CS550_RS08665 PF00854 POT family CS550_RS08680 PF00579 tRNA synthetases class I (W and Y) CS550_RS08690 PF02590 Predicted SPOUT methyltransferase CS550_RS08695 PF01641 SelR domain CS550_RS08695 PF01625 Peptide methionine sulfoxide reductase CS550_RS08695 PF08534 Redoxin CS550_RS08705 PF01545 Cation efflux family CS550_RS08705 PF16916 Dimerisation domain of Zinc Transporter CS550_RS08710 PF02152 Dihydroneopterin aldolase CS550_RS08740 PF14572 Phosphoribosyl synthetase-associated domain CS550_RS08740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CS550_RS08745 PF00271 Helicase conserved C-terminal domain CS550_RS08745 PF00270 DEAD/DEAH box helicase CS550_RS08790 PF06968 Biotin and Thiamin Synthesis associated domain CS550_RS08790 PF04055 Radical SAM superfamily CS550_RS08795 PF05690 Thiazole biosynthesis protein ThiG CS550_RS08800 PF02581 Thiamine monophosphate synthase CS550_RS08805 PF13667 ThiC-associated domain CS550_RS08805 PF01964 Radical SAM ThiC family CS550_RS08840 PF00886 Ribosomal protein S16 CS550_RS08850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CS550_RS08850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS550_RS08855 PF00753 Metallo-beta-lactamase superfamily CS550_RS08860 PF17763 Glutaminase/Asparaginase C-terminal domain CS550_RS08860 PF00710 Asparaginase, N-terminal CS550_RS08875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CS550_RS08875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CS550_RS08885 PF01168 Alanine racemase, N-terminal domain CS550_RS08910 PF06321 Major fimbrial subunit protein (FimA) CS550_RS08915 PF08842 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 CS550_RS08920 PF06321 Major fimbrial subunit protein (FimA) CS550_RS08945 PF01783 Ribosomal L32p protein family CS550_RS08950 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CS550_RS08950 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CS550_RS08955 PF01926 50S ribosome-binding GTPase CS550_RS08955 PF07650 KH domain CS550_RS08960 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CS550_RS08960 PF01926 50S ribosome-binding GTPase CS550_RS08970 PF01522 Polysaccharide deacetylase CS550_RS08975 PF01266 FAD dependent oxidoreductase CS550_RS08975 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CS550_RS08985 PF00860 Permease family CS550_RS09030 PF04452 RNA methyltransferase CS550_RS09040 PF02657 Fe-S metabolism associated domain CS550_RS09045 PF01593 Flavin containing amine oxidoreductase CS550_RS09060 PF02684 Lipid-A-disaccharide synthetase CS550_RS09065 PF01975 Survival protein SurE CS550_RS09075 PF03129 Anticodon binding domain CS550_RS09110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS550_RS09110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS550_RS09140 PF00175 Oxidoreductase NAD-binding domain CS550_RS09140 PF00970 Oxidoreductase FAD-binding domain CS550_RS09140 PF00111 2Fe-2S iron-sulfur cluster binding domain CS550_RS09145 PF02508 Rnf-Nqr subunit, membrane protein CS550_RS09150 PF02508 Rnf-Nqr subunit, membrane protein CS550_RS09155 PF04205 FMN-binding domain CS550_RS09160 PF03116 NQR2, RnfD, RnfE family CS550_RS09165 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CS550_RS09165 PF11973 NQRA C-terminal domain CS550_RS09185 PF01040 UbiA prenyltransferase family CS550_RS09190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CS550_RS09190 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CS550_RS09195 PF01842 ACT domain CS550_RS09195 PF00696 Amino acid kinase family CS550_RS09200 PF00005 ABC transporter CS550_RS09210 PF01476 LysM domain CS550_RS09210 PF08525 Opacity-associated protein A N-terminal motif CS550_RS09210 PF01551 Peptidase family M23 CS550_RS09215 PF06071 Protein of unknown function (DUF933) CS550_RS09215 PF01926 50S ribosome-binding GTPase CS550_RS09220 PF00004 ATPase family associated with various cellular activities (AAA) CS550_RS09220 PF01434 Peptidase family M41 CS550_RS09220 PF17862 AAA+ lid domain CS550_RS09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS09230 PF00183 Hsp90 protein CS550_RS09240 PF02838 Glycosyl hydrolase family 20, domain 2 CS550_RS09240 PF00728 Glycosyl hydrolase family 20, catalytic domain CS550_RS09240 PF07691 PA14 domain CS550_RS09245 PF00464 Serine hydroxymethyltransferase CS550_RS09255 PF01245 Ribosomal protein L19 CS550_RS09260 PF07733 Bacterial DNA polymerase III alpha NTPase domain CS550_RS09260 PF14579 Helix-hairpin-helix motif CS550_RS09260 PF02811 PHP domain CS550_RS09260 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CS550_RS09260 PF01336 OB-fold nucleic acid binding domain CS550_RS09265 PF00085 Thioredoxin CS550_RS09270 PF02646 RmuC family CS550_RS09290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CS550_RS09300 PF00588 SpoU rRNA Methylase family CS550_RS09300 PF08032 RNA 2'-O ribose methyltransferase substrate binding CS550_RS09305 PF02542 YgbB family CS550_RS09320 PF01557 Fumarylacetoacetate (FAA) hydrolase family CS550_RS09325 PF02629 CoA binding domain CS550_RS09325 PF06971 Putative DNA-binding protein N-terminus CS550_RS09330 PF00916 Sulfate permease family CS550_RS09330 PF01740 STAS domain CS550_RS09335 PF01207 Dihydrouridine synthase (Dus) CS550_RS09350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS09350 PF00512 His Kinase A (phospho-acceptor) domain CS550_RS09355 PF02954 Bacterial regulatory protein, Fis family CS550_RS09355 PF00072 Response regulator receiver domain CS550_RS09355 PF00158 Sigma-54 interaction domain CS550_RS09360 PF04029 2-phosphosulpholactate phosphatase CS550_RS09365 PF00155 Aminotransferase class I and II CS550_RS09370 PF01915 Glycosyl hydrolase family 3 C-terminal domain CS550_RS09370 PF00933 Glycosyl hydrolase family 3 N terminal domain CS550_RS09375 PF00004 ATPase family associated with various cellular activities (AAA) CS550_RS09375 PF07724 AAA domain (Cdc48 subfamily) CS550_RS09375 PF17871 AAA lid domain CS550_RS09375 PF10431 C-terminal, D2-small domain, of ClpB protein CS550_RS09375 PF02861 Clp amino terminal domain, pathogenicity island component CS550_RS09400 PF00149 Calcineurin-like phosphoesterase CS550_RS09405 PF02146 Sir2 family CS550_RS09415 PF00132 Bacterial transferase hexapeptide (six repeats) CS550_RS09420 PF00308 Bacterial dnaA protein CS550_RS09420 PF08299 Bacterial dnaA protein helix-turn-helix CS550_RS09420 PF11638 DnaA N-terminal domain CS550_RS09450 PF00535 Glycosyl transferase family 2 CS550_RS09460 PF00919 Uncharacterized protein family UPF0004 CS550_RS09460 PF04055 Radical SAM superfamily CS550_RS09475 PF02386 Cation transport protein CS550_RS09480 PF02254 TrkA-N domain CS550_RS09480 PF02080 TrkA-C domain CS550_RS09485 PF02780 Transketolase, C-terminal domain CS550_RS09485 PF02779 Transketolase, pyrimidine binding domain CS550_RS09485 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CS550_RS09495 PF01050 Mannose-6-phosphate isomerase CS550_RS09495 PF00483 Nucleotidyl transferase CS550_RS09510 PF01609 Transposase DDE domain CS550_RS09510 PF13808 DDE_Tnp_1-associated CS550_RS09535 PF17755 UvrA DNA-binding domain CS550_RS09535 PF17760 UvrA interaction domain CS550_RS09550 PF12848 ABC transporter CS550_RS09550 PF00005 ABC transporter CS550_RS09555 PF02558 Ketopantoate reductase PanE/ApbA CS550_RS09555 PF08546 Ketopantoate reductase PanE/ApbA C terminal CS550_RS09560 PF00207 Alpha-2-macroglobulin family CS550_RS09560 PF07703 Alpha-2-macroglobulin bait region domain CS550_RS09560 PF01835 MG2 domain CS550_RS09570 PF03652 Holliday junction resolvase CS550_RS09575 PF01327 Polypeptide deformylase CS550_RS09585 PF00005 ABC transporter CS550_RS09585 PF12848 ABC transporter CS550_RS09585 PF16326 ABC transporter C-terminal domain CS550_RS09590 PF01364 Peptidase family C25 CS550_RS09590 PF03785 Peptidase family C25, C terminal ig-like domain CS550_RS09590 PF18630 Peptidase M60 C-terminal domain CS550_RS09590 PF08126 Propeptide_C25 CS550_RS09600 PF00303 Thymidylate synthase CS550_RS09605 PF00186 Dihydrofolate reductase CS550_RS09610 PF03129 Anticodon binding domain CS550_RS09610 PF13393 Histidyl-tRNA synthetase CS550_RS09625 PF04055 Radical SAM superfamily CS550_RS09635 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CS550_RS09640 PF01467 Cytidylyltransferase-like CS550_RS09660 PF12705 PD-(D/E)XK nuclease superfamily CS550_RS09660 PF00580 UvrD/REP helicase N-terminal domain CS550_RS09660 PF13361 UvrD-like helicase C-terminal domain CS550_RS09715 PF01709 Transcriptional regulator CS550_RS09720 PF00488 MutS domain V CS550_RS09720 PF05192 MutS domain III CS550_RS09720 PF05188 MutS domain II CS550_RS09720 PF01624 MutS domain I CS550_RS09720 PF05190 MutS family domain IV CS550_RS09750 PF00210 Ferritin-like domain CS550_RS09760 PF01380 SIS domain CS550_RS09760 PF00571 CBS domain CS550_RS09765 PF00270 DEAD/DEAH box helicase CS550_RS09765 PF00271 Helicase conserved C-terminal domain CS550_RS09775 PF03313 Serine dehydratase alpha chain CS550_RS09775 PF03315 Serine dehydratase beta chain CS550_RS09815 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CS550_RS09815 PF01476 LysM domain CS550_RS09820 PF02769 AIR synthase related protein, C-terminal domain CS550_RS09820 PF00586 AIR synthase related protein, N-terminal domain CS550_RS09825 PF00472 RF-1 domain CS550_RS09825 PF03462 PCRF domain CS550_RS09830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CS550_RS09835 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CS550_RS09835 PF00132 Bacterial transferase hexapeptide (six repeats) CS550_RS09840 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CS550_RS09840 PF07977 FabA-like domain CS550_RS09845 PF00132 Bacterial transferase hexapeptide (six repeats) CS550_RS09845 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CS550_RS09850 PF01256 Carbohydrate kinase CS550_RS09850 PF03853 YjeF-related protein N-terminus CS550_RS09865 PF00873 AcrB/AcrD/AcrF family CS550_RS09875 PF05970 PIF1-like helicase CS550_RS09880 PF02638 Glycosyl hydrolase-like 10 CS550_RS09895 PF01467 Cytidylyltransferase-like CS550_RS09900 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CS550_RS09900 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CS550_RS09915 PF17768 RecJ OB domain CS550_RS09915 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CS550_RS09915 PF01368 DHH family CS550_RS09915 PF02272 DHHA1 domain CS550_RS09920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS550_RS09920 PF00989 PAS fold CS550_RS09920 PF00512 His Kinase A (phospho-acceptor) domain CS550_RS09940 PF01180 Dihydroorotate dehydrogenase CS550_RS09955 PF00701 Dihydrodipicolinate synthetase family CS550_RS09975 PF05970 PIF1-like helicase CS550_RS09975 PF14493 Helix-turn-helix domain CS550_RS09980 PF11734 TilS substrate C-terminal domain CS550_RS09980 PF01171 PP-loop family CS550_RS09990 PF01784 NIF3 (NGG1p interacting factor 3) CS550_RS10000 PF08534 Redoxin CS550_RS10010 PF01746 tRNA (Guanine-1)-methyltransferase CS550_RS10015 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CS550_RS10015 PF00970 Oxidoreductase FAD-binding domain CS550_RS10015 PF00175 Oxidoreductase NAD-binding domain CS550_RS10020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS550_RS10020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CS550_RS10025 PF00270 DEAD/DEAH box helicase CS550_RS10025 PF17764 3′ DNA-binding domain (3′BD) CS550_RS10025 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CS550_RS10025 PF18074 Primosomal protein N C-terminal domain CS550_RS10050 PF04073 Aminoacyl-tRNA editing domain CS550_RS10060 PF00300 Histidine phosphatase superfamily (branch 1) CS550_RS10065 PF10365 Domain of unknown function (DUF2436) CS550_RS10065 PF08126 Propeptide_C25 CS550_RS10065 PF01364 Peptidase family C25 CS550_RS10065 PF03785 Peptidase family C25, C terminal ig-like domain CS550_RS10065 PF07675 Cleaved Adhesin Domain CS550_RS10075 PF02911 Formyl transferase, C-terminal domain CS550_RS10075 PF00551 Formyl transferase CS550_RS10085 PF00884 Sulfatase CS550_RS10105 PF18019 HD domain CS550_RS10125 PF01867 CRISPR associated protein Cas1 CS550_RS10130 PF09827 CRISPR associated protein Cas2 CS550_RS10155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CS550_RS10155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CS550_RS10155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CS550_RS10155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CS550_RS10160 PF11967 Recombination protein O N terminal CS550_RS10160 PF02565 Recombination protein O C terminal CS550_RS10165 PF07715 TonB-dependent Receptor Plug Domain CS550_RS10165 PF00593 TonB dependent receptor CS550_RS10175 PF03601 Conserved hypothetical protein 698 CS550_RS10180 PF01966 HD domain CS550_RS10180 PF13286 Phosphohydrolase-associated domain CS550_RS10185 PF05173 Dihydrodipicolinate reductase, C-terminus CS550_RS10185 PF01113 Dihydrodipicolinate reductase, N-terminus CS550_RS10190 PF10502 Signal peptidase, peptidase S26 CS550_RS10205 PF00348 Polyprenyl synthetase CS550_RS10210 PF01791 DeoC/LacD family aldolase CS550_RS10220 PF02580 D-Tyr-tRNA(Tyr) deacylase CS550_RS10225 PF01541 GIY-YIG catalytic domain CS550_RS10225 PF08459 UvrC Helix-hairpin-helix N-terminal CS550_RS10230 PF13932 GidA associated domain CS550_RS10230 PF01134 Glucose inhibited division protein A CS550_RS10270 PF03787 RAMP superfamily CS550_RS10275 PF01867 CRISPR associated protein Cas1 CS550_RS10280 PF09827 CRISPR associated protein Cas2 CS550_RS10320 PF00924 Mechanosensitive ion channel CS550_RS10320 PF05552 Conserved TM helix CS550_RS10325 PF00654 Voltage gated chloride channel CS550_RS10330 PF02397 Bacterial sugar transferase CS550_RS10335 PF01300 Telomere recombination CS550_RS10340 PF02661 Fic/DOC family CS550_RS10355 PF00830 Ribosomal L28 family CS550_RS10360 PF00471 Ribosomal protein L33 CS550_RS10375 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CS550_RS10375 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CS550_RS10380 PF01370 NAD dependent epimerase/dehydratase family CS550_RS10395 PF00749 tRNA synthetases class I (E and Q), catalytic domain CS550_RS10395 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CS550_RS10400 PF01594 AI-2E family transporter CS550_RS10410 PF00056 lactate/malate dehydrogenase, NAD binding domain CS550_RS10410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CS550_RS10425 PF00950 ABC 3 transport family CS550_RS10435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)