CTM46_RS00100	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS00110	SM00641	Glycosyl hydrolases family 25
CTM46_RS00150	SM00422	helix_turn_helix, mercury resistance
CTM46_RS00155	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CTM46_RS00170	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS00185	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS00225	SM00954	Region found in RelA / SpoT proteins
CTM46_RS00270	SM00400	zinc finger
CTM46_RS00270	SM00493	CTM46_RS00270
CTM46_RS00275	SM00155	Phospholipase D. Active site motifs.
CTM46_RS00290	SM00662	RNA polymerases D
CTM46_RS00295	SM00363	S4 RNA-binding domain
CTM46_RS00295	SM01390	CTM46_RS00295
CTM46_RS00315	SM00316	Ribosomal protein S1-like RNA-binding domain
CTM46_RS00365	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CTM46_RS00370	SM01374	CTM46_RS00370
CTM46_RS00390	SM00322	K homology RNA-binding domain
CTM46_RS00405	SM01382	CTM46_RS00405
CTM46_RS00405	SM01383	CTM46_RS00405
CTM46_RS00425	SM01403	CTM46_RS00425
CTM46_RS00430	SM00838	Elongation factor G C-terminus
CTM46_RS00430	SM00889	Elongation factor G, domain IV
CTM46_RS00490	SM00663	RNA polymerase I subunit A N-terminus
CTM46_RS00515	SM00649	Ribosomal protein L11/L12
CTM46_RS00520	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CTM46_RS00520	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CTM46_RS00595	SM00060	Fibronectin type 3 domain
CTM46_RS00600	SM00060	Fibronectin type 3 domain
CTM46_RS00665	SM00487	DEAD-like helicases superfamily
CTM46_RS00665	SM00490	helicase superfamily c-terminal domain
CTM46_RS00670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CTM46_RS00820	SM00849	Metallo-beta-lactamase superfamily
CTM46_RS00860	SM00028	Tetratricopeptide repeats
CTM46_RS00870	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CTM46_RS00940	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS00995	SM00881	CoA binding domain
CTM46_RS01070	SM00862	Transcriptional regulatory protein, C terminal
CTM46_RS01140	SM00411	bacterial (prokaryotic) histone like domain
CTM46_RS01215	SM00935	Outer membrane protein (OmpH-like)
CTM46_RS01220	SM00935	Outer membrane protein (OmpH-like)
CTM46_RS01225	SM00935	Outer membrane protein (OmpH-like)
CTM46_RS01250	SM00836	DALR anticodon binding domain
CTM46_RS01250	SM01016	Arginyl tRNA synthetase N terminal dom
CTM46_RS01255	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS01270	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS01275	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS01370	SM01234	CTM46_RS01370
CTM46_RS01435	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS01450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CTM46_RS01470	SM00937	CTM46_RS01470
CTM46_RS01475	SM01118	CTM46_RS01475
CTM46_RS01595	SM00344	helix_turn_helix ASNC type
CTM46_RS01615	SM00448	cheY-homologous receiver domain
CTM46_RS01615	SM00850	LytTr DNA-binding domain
CTM46_RS01665	SM00530	Helix-turn-helix XRE-family like proteins 
CTM46_RS01740	SM00316	Ribosomal protein S1-like RNA-binding domain
CTM46_RS01740	SM00955	CTM46_RS01740
CTM46_RS01780	SM01001	AIR carboxylase
CTM46_RS01890	SM00823	Phosphopantetheine attachment site
CTM46_RS01895	SM00825	Beta-ketoacyl synthase
CTM46_RS01900	SM00358	Double-stranded RNA binding motif
CTM46_RS01900	SM00535	Ribonuclease III family
CTM46_RS01920	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CTM46_RS01920	SM00534	ATPase domain of DNA mismatch repair MUTS family
CTM46_RS01930	SM00840	CTM46_RS01930
CTM46_RS01960	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CTM46_RS01960	SM00474	3'-5' exonuclease
CTM46_RS01960	SM00475	5'-3' exonuclease
CTM46_RS01960	SM00482	DNA polymerase A domain
CTM46_RS01975	SM01133	CTM46_RS01975
CTM46_RS01990	SM00465	GIY-YIG type nucleases (URI domain)
CTM46_RS02000	SM01228	CTM46_RS02000
CTM46_RS02045	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CTM46_RS02045	SM00245	tail specific protease
CTM46_RS02050	SM00387	Histidine kinase-like ATPases
CTM46_RS02050	SM00433	TopoisomeraseII
CTM46_RS02170	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS02175	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS02190	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS02260	SM00487	DEAD-like helicases superfamily
CTM46_RS02260	SM00490	helicase superfamily c-terminal domain
CTM46_RS02335	SM00014	Acid phosphatase homologues
CTM46_RS02385	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS02400	SM00530	Helix-turn-helix XRE-family like proteins 
CTM46_RS02430	SM00904	Riboflavin kinase
CTM46_RS02530	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS02535	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS02550	SM00316	Ribosomal protein S1-like RNA-binding domain
CTM46_RS02550	SM00322	K homology RNA-binding domain
CTM46_RS02575	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS02605	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CTM46_RS02605	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CTM46_RS02605	SM00493	CTM46_RS02605
CTM46_RS02640	SM00841	Elongation factor P, C-terminal
CTM46_RS02640	SM01185	CTM46_RS02640
CTM46_RS02650	SM00740	CTM46_RS02650
CTM46_RS02655	SM00363	S4 RNA-binding domain
CTM46_RS02695	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS02715	SM00861	Transketolase, pyrimidine binding domain
CTM46_RS02860	SM00831	Cation transporter/ATPase, N-terminus
CTM46_RS02870	SM00316	Ribosomal protein S1-like RNA-binding domain
CTM46_RS02890	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS02955	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CTM46_RS02955	SM00245	tail specific protease
CTM46_RS03010	SM00986	Uracil DNA glycosylase superfamily
CTM46_RS03010	SM00987	UreE urease accessory protein, C-terminal domain 
CTM46_RS03015	SM00986	Uracil DNA glycosylase superfamily
CTM46_RS03015	SM00987	UreE urease accessory protein, C-terminal domain 
CTM46_RS03065	SM00387	Histidine kinase-like ATPases
CTM46_RS03065	SM00433	TopoisomeraseII
CTM46_RS03070	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS03090	SM01230	CTM46_RS03090
CTM46_RS03160	SM00842	Cell division protein FtsA
CTM46_RS03165	SM00864	Tubulin/FtsZ family, GTPase domain
CTM46_RS03165	SM00865	Tubulin/FtsZ family, C-terminal domain
CTM46_RS03245	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS03260	SM01211	CTM46_RS03260
CTM46_RS03280	SM00072	Guanylate kinase homologues.
CTM46_RS03365	SM00870	CTM46_RS03365
CTM46_RS03390	SM00257	Lysin motif
CTM46_RS03395	SM00487	DEAD-like helicases superfamily
CTM46_RS03395	SM00490	helicase superfamily c-terminal domain
CTM46_RS03415	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS03430	SM00014	Acid phosphatase homologues
CTM46_RS03445	SM00028	Tetratricopeptide repeats
CTM46_RS03455	SM00354	helix_turn _helix lactose operon repressor
CTM46_RS03490	SM00642	Alpha-amylase domain
CTM46_RS03550	SM00710	Parallel beta-helix repeats
CTM46_RS03615	SM00642	Alpha-amylase domain
CTM46_RS03620	SM00642	Alpha-amylase domain
CTM46_RS03630	SM01065	Starch binding domain
CTM46_RS03650	SM00640	Glycosyl hydrolases family 32
CTM46_RS03660	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS03660	SM00387	Histidine kinase-like ATPases
CTM46_RS03660	SM00388	His Kinase A (phosphoacceptor) domain
CTM46_RS03660	SM00448	cheY-homologous receiver domain
CTM46_RS03745	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CTM46_RS03745	SM00954	Region found in RelA / SpoT proteins
CTM46_RS03760	SM00470	ParB-like nuclease domain
CTM46_RS03810	SM00434	DNA Topoisomerase IV
CTM46_RS03820	SM00245	tail specific protease
CTM46_RS03840	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS03840	SM00994	ClpX C4-type zinc finger
CTM46_RS03840	SM01086	C-terminal, D2-small domain, of ClpB protein
CTM46_RS03845	SM00341	Helicase and RNase D C-terminal
CTM46_RS03845	SM00487	DEAD-like helicases superfamily
CTM46_RS03845	SM00490	helicase superfamily c-terminal domain
CTM46_RS03845	SM00956	CTM46_RS03845
CTM46_RS03880	SM00116	Domain in cystathionine beta-synthase and other proteins.
CTM46_RS03880	SM01240	CTM46_RS03880
CTM46_RS03905	SM00853	MutL C terminal dimerisation domain
CTM46_RS03905	SM01340	CTM46_RS03905
CTM46_RS03930	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS03935	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS03945	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS03985	SM00387	Histidine kinase-like ATPases
CTM46_RS04025	SM01005	Alanine racemase, C-terminal domain
CTM46_RS04075	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS04090	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS04120	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CTM46_RS04125	SM00650	Ribosomal RNA adenine dimethylases
CTM46_RS04160	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS04225	SM00448	cheY-homologous receiver domain
CTM46_RS04225	SM00850	LytTr DNA-binding domain
CTM46_RS04230	SM00900	CTM46_RS04230
CTM46_RS04235	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CTM46_RS04245	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS04275	SM00028	Tetratricopeptide repeats
CTM46_RS04330	SM00479	CTM46_RS04330
CTM46_RS04350	SM00478	endonuclease III
CTM46_RS04355	SM00851	MGS-like domain
CTM46_RS04385	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CTM46_RS04490	SM00487	DEAD-like helicases superfamily
CTM46_RS04490	SM00490	helicase superfamily c-terminal domain
CTM46_RS04490	SM00982	CTM46_RS04490
CTM46_RS04490	SM01058	CarD-like/TRCF domain
CTM46_RS04530	SM00028	Tetratricopeptide repeats
CTM46_RS04595	SM00448	cheY-homologous receiver domain
CTM46_RS04600	SM00028	Tetratricopeptide repeats
CTM46_RS04645	SM00481	DNA polymerase alpha chain like domain
CTM46_RS04685	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CTM46_RS04735	SM01387	CTM46_RS04735
CTM46_RS04740	SM00838	Elongation factor G C-terminus
CTM46_RS04855	SM00822	CTM46_RS04855
CTM46_RS04870	SM00028	Tetratricopeptide repeats
CTM46_RS04910	SM00905	Dihydroneopterin aldolase
CTM46_RS04915	SM00646	CTM46_RS04915
CTM46_RS04935	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS04935	SM00760	Bacterial dnaA protein helix-turn-helix domain
CTM46_RS04975	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS04975	SM01086	C-terminal, D2-small domain, of ClpB protein
CTM46_RS04995	SM01360	CTM46_RS04995
CTM46_RS05070	SM00244	prohibitin homologues
CTM46_RS05105	SM00322	K homology RNA-binding domain
CTM46_RS05105	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CTM46_RS05150	SM00830	Chorismate mutase type II
CTM46_RS05155	SM00028	Tetratricopeptide repeats
CTM46_RS05180	SM01221	CTM46_RS05180
CTM46_RS05180	SM01222	CTM46_RS05180
CTM46_RS05200	SM00421	helix_turn_helix, Lux Regulon
CTM46_RS05205	SM00421	helix_turn_helix, Lux Regulon
CTM46_RS05210	SM00155	Phospholipase D. Active site motifs.
CTM46_RS05315	SM01192	CTM46_RS05315
CTM46_RS05315	SM01193	CTM46_RS05315
CTM46_RS05610	SM00257	Lysin motif
CTM46_RS05630	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS05690	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS05785	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS05875	SM01011	Aminopeptidase P, N-terminal domain
CTM46_RS05890	SM00487	DEAD-like helicases superfamily
CTM46_RS05890	SM00490	helicase superfamily c-terminal domain
CTM46_RS05895	SM00883	Chaperonin 10 Kd subunit
CTM46_RS05945	SM00028	Tetratricopeptide repeats
CTM46_RS05945	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS05945	SM00387	Histidine kinase-like ATPases
CTM46_RS05945	SM00388	His Kinase A (phosphoacceptor) domain
CTM46_RS05945	SM00448	cheY-homologous receiver domain
CTM46_RS05985	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CTM46_RS05990	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CTM46_RS05995	SM00937	CTM46_RS05995
CTM46_RS06060	SM01266	CTM46_RS06060
CTM46_RS06075	SM00271	DnaJ molecular chaperone homology domain
CTM46_RS06090	SM01400	CTM46_RS06090
CTM46_RS06115	SM00245	tail specific protease
CTM46_RS06125	SM00788	Adenylosuccinate synthetase
CTM46_RS06140	SM00478	endonuclease III
CTM46_RS06160	SM00354	helix_turn _helix lactose operon repressor
CTM46_RS06165	SM00387	Histidine kinase-like ATPases
CTM46_RS06170	SM00448	cheY-homologous receiver domain
CTM46_RS06215	SM00116	Domain in cystathionine beta-synthase and other proteins.
CTM46_RS06215	SM01091	Transporter associated domain
CTM46_RS06225	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
CTM46_RS06230	SM00642	Alpha-amylase domain
CTM46_RS06255	SM00387	Histidine kinase-like ATPases
CTM46_RS06255	SM00388	His Kinase A (phosphoacceptor) domain
CTM46_RS06260	SM00448	cheY-homologous receiver domain
CTM46_RS06260	SM00862	Transcriptional regulatory protein, C terminal
CTM46_RS06305	SM00316	Ribosomal protein S1-like RNA-binding domain
CTM46_RS06305	SM00732	Likely ribonuclease with RNase H fold.
CTM46_RS06310	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS06335	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS06345	SM00271	DnaJ molecular chaperone homology domain
CTM46_RS06455	SM00984	UDP binding domain
CTM46_RS06530	SM00450	Rhodanese Homology Domain
CTM46_RS06540	SM00226	Low molecular weight phosphatase family
CTM46_RS06575	SM00493	CTM46_RS06575
CTM46_RS06590	SM00344	helix_turn_helix ASNC type
CTM46_RS06620	SM00890	Domain of unknown function
CTM46_RS06625	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CTM46_RS06645	SM00028	Tetratricopeptide repeats
CTM46_RS06655	SM00732	Likely ribonuclease with RNase H fold.
CTM46_RS06700	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CTM46_RS06700	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CTM46_RS06700	SM00493	CTM46_RS06700
CTM46_RS06745	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS06765	SM01409	CTM46_RS06765
CTM46_RS06775	SM00487	DEAD-like helicases superfamily
CTM46_RS06775	SM00490	helicase superfamily c-terminal domain
CTM46_RS06835	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS06845	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CTM46_RS06855	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS06855	SM00464	Found in ATP-dependent protease La (LON)
CTM46_RS06870	SM00487	DEAD-like helicases superfamily
CTM46_RS06870	SM00490	helicase superfamily c-terminal domain
CTM46_RS06935	SM00419	helix_turn_helix, cAMP Regulatory protein
CTM46_RS07015	SM00028	Tetratricopeptide repeats
CTM46_RS07125	SM00641	Glycosyl hydrolases family 25
CTM46_RS07135	SM00855	Phosphoglycerate mutase family
CTM46_RS07180	SM00477	DNA/RNA non-specific endonuclease
CTM46_RS07180	SM00892	DNA/RNA non-specific endonuclease
CTM46_RS07225	SM00411	bacterial (prokaryotic) histone like domain
CTM46_RS07230	SM00316	Ribosomal protein S1-like RNA-binding domain
CTM46_RS07260	SM00812	Alpha-L-fucosidase
CTM46_RS07275	SM00460	Transglutaminase/protease-like homologues
CTM46_RS07290	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS07300	SM00060	Fibronectin type 3 domain
CTM46_RS07305	SM00563	Phosphate acyltransferases
CTM46_RS07320	SM00641	Glycosyl hydrolases family 25
CTM46_RS07360	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS07405	SM00873	B3/4 domain
CTM46_RS07410	SM00292	breast cancer carboxy-terminal domain
CTM46_RS07410	SM00532	Ligase N family
CTM46_RS07425	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS07425	SM00962	SRP54-type protein, GTPase domain
CTM46_RS07425	SM00963	SRP54-type protein, helical bundle domain
CTM46_RS07435	SM00028	Tetratricopeptide repeats
CTM46_RS07475	SM00861	Transketolase, pyrimidine binding domain
CTM46_RS07580	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS07690	SM01130	CTM46_RS07690
CTM46_RS07695	SM00870	CTM46_RS07695
CTM46_RS07715	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CTM46_RS07720	SM00851	MGS-like domain
CTM46_RS07720	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CTM46_RS07735	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS07795	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CTM46_RS07795	SM00245	tail specific protease
CTM46_RS07845	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS07885	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CTM46_RS07970	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CTM46_RS07975	SM00642	Alpha-amylase domain
CTM46_RS07980	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CTM46_RS08060	SM00984	UDP binding domain
CTM46_RS08070	SM00434	DNA Topoisomerase IV
CTM46_RS08080	SM00028	Tetratricopeptide repeats
CTM46_RS08090	SM00487	DEAD-like helicases superfamily
CTM46_RS08090	SM00490	helicase superfamily c-terminal domain
CTM46_RS08165	SM00487	DEAD-like helicases superfamily
CTM46_RS08165	SM00490	helicase superfamily c-terminal domain
CTM46_RS08365	SM00838	Elongation factor G C-terminus
CTM46_RS08365	SM00889	Elongation factor G, domain IV
CTM46_RS08370	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS08465	SM00530	Helix-turn-helix XRE-family like proteins 
CTM46_RS08550	SM00271	DnaJ molecular chaperone homology domain
CTM46_RS08590	SM01323	CTM46_RS08590
CTM46_RS08610	SM00363	S4 RNA-binding domain
CTM46_RS08660	SM00893	Electron transfer flavoprotein domain
CTM46_RS08665	SM00893	Electron transfer flavoprotein domain
CTM46_RS08720	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CTM46_RS08745	SM00798	AICARFT/IMPCHase bienzyme
CTM46_RS08765	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CTM46_RS08770	SM00534	ATPase domain of DNA mismatch repair MUTS family
CTM46_RS08790	SM00363	S4 RNA-binding domain
CTM46_RS08820	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CTM46_RS08870	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CTM46_RS08870	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CTM46_RS08870	SM00493	CTM46_RS08870
CTM46_RS08885	SM00148	Phospholipase C, catalytic domain (part); domain X
CTM46_RS08910	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS09120	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS09125	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS09150	SM00347	helix_turn_helix multiple antibiotic resistance protein
CTM46_RS09195	SM00487	DEAD-like helicases superfamily
CTM46_RS09225	SM00342	helix_turn_helix, arabinose operon control protein
CTM46_RS09345	SM00530	Helix-turn-helix XRE-family like proteins 
CTM46_RS09535	SM00479	CTM46_RS09535
CTM46_RS09565	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS09565	SM01086	C-terminal, D2-small domain, of ClpB protein
CTM46_RS09600	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS09730	SM00244	prohibitin homologues
CTM46_RS09755	SM00563	Phosphate acyltransferases
CTM46_RS09785	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS09815	SM00327	von Willebrand factor (vWF) type A domain
CTM46_RS09820	SM00327	von Willebrand factor (vWF) type A domain
CTM46_RS09825	SM00028	Tetratricopeptide repeats
CTM46_RS09830	SM00028	Tetratricopeptide repeats
CTM46_RS09835	SM00014	Acid phosphatase homologues
CTM46_RS09870	SM00919	Malic enzyme, NAD binding domain
CTM46_RS09870	SM01274	CTM46_RS09870
CTM46_RS09880	SM00954	Region found in RelA / SpoT proteins
CTM46_RS09890	SM01252	CTM46_RS09890
CTM46_RS10025	SM00899	CTM46_RS10025
CTM46_RS10045	SM00946	Prolyl-tRNA synthetase, C-terminal
CTM46_RS10065	SM00849	Metallo-beta-lactamase superfamily
CTM46_RS10080	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS10095	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS10175	SM00935	Outer membrane protein (OmpH-like)
CTM46_RS10230	SM00900	CTM46_RS10230
CTM46_RS10355	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CTM46_RS10385	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS10385	SM01086	C-terminal, D2-small domain, of ClpB protein
CTM46_RS10450	SM00981	CTM46_RS10450
CTM46_RS10460	SM01209	CTM46_RS10460
CTM46_RS10460	SM01210	CTM46_RS10460
CTM46_RS10540	SM00047	Lysozyme subfamily 2
CTM46_RS10540	SM00257	Lysin motif
CTM46_RS10550	SM00316	Ribosomal protein S1-like RNA-binding domain
CTM46_RS10580	SM00357	Cold shock protein domain
CTM46_RS10580	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS10620	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CTM46_RS10685	SM00822	CTM46_RS10685
CTM46_RS10760	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS10760	SM00962	SRP54-type protein, GTPase domain
CTM46_RS10760	SM00963	SRP54-type protein, helical bundle domain
CTM46_RS10765	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS10770	SM00411	bacterial (prokaryotic) histone like domain
CTM46_RS10775	SM00411	bacterial (prokaryotic) histone like domain
CTM46_RS10795	SM00849	Metallo-beta-lactamase superfamily
CTM46_RS10820	SM00900	CTM46_RS10820
CTM46_RS10825	SM00729	Elongator protein 3, MiaB family, Radical SAM
CTM46_RS10845	SM00671	Sel1-like repeats.
CTM46_RS10900	SM00060	Fibronectin type 3 domain
CTM46_RS10955	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS10990	SM00463	Small MutS-related domain
CTM46_RS10990	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CTM46_RS10990	SM00534	ATPase domain of DNA mismatch repair MUTS family
CTM46_RS10995	SM00977	TilS substrate C-terminal domain
CTM46_RS11000	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CTM46_RS11005	SM00474	3'-5' exonuclease
CTM46_RS11010	SM00843	CTM46_RS11010
CTM46_RS11055	SM00382	ATPases associated with a variety of cellular activities
CTM46_RS11140	SM00957	SecA DEAD-like domain
CTM46_RS11140	SM00958	SecA preprotein cross-linking domain
CTM46_RS11165	SM01091	Transporter associated domain
CTM46_RS11220	SM00873	B3/4 domain
CTM46_RS11220	SM00874	tRNA synthetase B5 domain
CTM46_RS11220	SM00896	Ferredoxin-fold anticodon binding domain
CTM46_RS11245	SM00480	DNA polymerase III beta subunit
CTM46_RS11250	SM00479	CTM46_RS11250
CTM46_RS11270	SM00028	Tetratricopeptide repeats
CTM46_RS11300	SM00477	DNA/RNA non-specific endonuclease
CTM46_RS11300	SM00892	DNA/RNA non-specific endonuclease
CTM46_RS11415	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
CTM46_RS11430	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
CTM46_RS11475	SM00860	SMI1 / KNR4 family
CTM46_RS11480	SM00860	SMI1 / KNR4 family
CTM46_RS11495	SM00860	SMI1 / KNR4 family
CTM46_RS11500	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
CTM46_RS11575	SM01038	Beta galactosidase small chain
CTM46_RS11715	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CTM46_RS11715	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CTM46_RS11715	SM00493	CTM46_RS11715
CTM46_RS11730	SM00028	Tetratricopeptide repeats
CTM46_RS11740	SM00563	Phosphate acyltransferases
CTM46_RS11765	SM00448	cheY-homologous receiver domain
CTM46_RS11765	SM00850	LytTr DNA-binding domain
CTM46_RS12060	SM00400	zinc finger
CTM46_RS12075	SM00530	Helix-turn-helix XRE-family like proteins 
CTM46_RS12080	SM00487	DEAD-like helicases superfamily
CTM46_RS12080	SM00490	helicase superfamily c-terminal domain
CTM46_RS12105	SM00857	Resolvase, N terminal domain
CTM46_RS12135	SM00490	helicase superfamily c-terminal domain
CTM46_RS12145	SM00650	Ribosomal RNA adenine dimethylases
