locus-tag class description HRD54_RS00005 PF00308 Bacterial dnaA protein HRD54_RS00005 PF11638 DnaA N-terminal domain HRD54_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix HRD54_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HRD54_RS00010 PF02767 DNA polymerase III beta subunit, central domain HRD54_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HRD54_RS00015 PF02463 RecF/RecN/SMC N terminal domain HRD54_RS00020 PF00204 DNA gyrase B HRD54_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus HRD54_RS00020 PF18053 DNA gyrase B subunit insert domain HRD54_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS00020 PF01751 Toprim domain HRD54_RS00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRD54_RS00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRD54_RS00030 PF13649 Methyltransferase domain HRD54_RS00035 PF00392 Bacterial regulatory proteins, gntR family HRD54_RS00035 PF00155 Aminotransferase class I and II HRD54_RS00050 PF13580 SIS domain HRD54_RS00095 PF00271 Helicase conserved C-terminal domain HRD54_RS00095 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HRD54_RS00095 PF08463 EcoEI R protein C-terminal HRD54_RS00095 PF04851 Type III restriction enzyme, res subunit HRD54_RS00100 PF02384 N-6 DNA Methylase HRD54_RS00100 PF12161 HsdM N-terminal domain HRD54_RS00105 PF01420 Type I restriction modification DNA specificity domain HRD54_RS00155 PF03755 YicC-like family, N-terminal region HRD54_RS00155 PF08340 Domain of unknown function (DUF1732) HRD54_RS00160 PF01138 3' exoribonuclease family, domain 1 HRD54_RS00160 PF03725 3' exoribonuclease family, domain 2 HRD54_RS00165 PF00156 Phosphoribosyl transferase domain HRD54_RS00170 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS00175 PF00692 dUTPase HRD54_RS00180 PF02441 Flavoprotein HRD54_RS00180 PF04127 DNA / pantothenate metabolism flavoprotein HRD54_RS00185 PF04002 RadC-like JAB domain HRD54_RS00190 PF00830 Ribosomal L28 family HRD54_RS00195 PF00471 Ribosomal protein L33 HRD54_RS00200 PF00534 Glycosyl transferases group 1 HRD54_RS00210 PF13439 Glycosyltransferase Family 4 HRD54_RS00210 PF00534 Glycosyl transferases group 1 HRD54_RS00220 PF04932 O-Antigen ligase HRD54_RS00225 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HRD54_RS00225 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HRD54_RS00225 PF06827 Zinc finger found in FPG and IleRS HRD54_RS00230 PF01467 Cytidylyltransferase-like HRD54_RS00235 PF00535 Glycosyl transferase family 2 HRD54_RS00240 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HRD54_RS00250 PF13439 Glycosyltransferase Family 4 HRD54_RS00250 PF00534 Glycosyl transferases group 1 HRD54_RS00255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HRD54_RS00270 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HRD54_RS00275 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HRD54_RS00280 PF01370 NAD dependent epimerase/dehydratase family HRD54_RS00285 PF00155 Aminotransferase class I and II HRD54_RS00290 PF08240 Alcohol dehydrogenase GroES-like domain HRD54_RS00290 PF00107 Zinc-binding dehydrogenase HRD54_RS00295 PF04748 Divergent polysaccharide deacetylase HRD54_RS00300 PF01551 Peptidase family M23 HRD54_RS00305 PF00919 Uncharacterized protein family UPF0004 HRD54_RS00305 PF18693 TRAM domain HRD54_RS00305 PF04055 Radical SAM superfamily HRD54_RS00315 PF00581 Rhodanese-like domain HRD54_RS00320 PF02556 Preprotein translocase subunit SecB HRD54_RS00325 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HRD54_RS00325 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HRD54_RS00330 PF06426 Serine acetyltransferase, N-terminal HRD54_RS00330 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS00335 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS00335 PF06426 Serine acetyltransferase, N-terminal HRD54_RS00340 PF00588 SpoU rRNA Methylase family HRD54_RS00345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HRD54_RS00345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HRD54_RS00345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HRD54_RS00350 PF01370 NAD dependent epimerase/dehydratase family HRD54_RS00355 PF00534 Glycosyl transferases group 1 HRD54_RS00355 PF13439 Glycosyltransferase Family 4 HRD54_RS00360 PF13439 Glycosyltransferase Family 4 HRD54_RS00360 PF00534 Glycosyl transferases group 1 HRD54_RS00370 PF13439 Glycosyltransferase Family 4 HRD54_RS00370 PF00534 Glycosyl transferases group 1 HRD54_RS00375 PF00535 Glycosyl transferase family 2 HRD54_RS00375 PF01501 Glycosyl transferase family 8 HRD54_RS00385 PF01370 NAD dependent epimerase/dehydratase family HRD54_RS00395 PF08889 WbqC-like protein family HRD54_RS00400 PF00535 Glycosyl transferase family 2 HRD54_RS00405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRD54_RS00410 PF00672 HAMP domain HRD54_RS00410 PF16527 Two-component sensor protein CpxA, periplasmic domain HRD54_RS00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS00410 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS00415 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS00415 PF00072 Response regulator receiver domain HRD54_RS00420 PF07813 LTXXQ motif family protein HRD54_RS00425 PF00534 Glycosyl transferases group 1 HRD54_RS00425 PF13439 Glycosyltransferase Family 4 HRD54_RS00430 PF13439 Glycosyltransferase Family 4 HRD54_RS00430 PF00534 Glycosyl transferases group 1 HRD54_RS00440 PF00365 Phosphofructokinase HRD54_RS00450 PF00121 Triosephosphate isomerase HRD54_RS00455 PF07305 Protein of unknown function (DUF1454) HRD54_RS00460 PF05656 Protein of unknown function (DUF805) HRD54_RS00465 PF00970 Oxidoreductase FAD-binding domain HRD54_RS00465 PF00175 Oxidoreductase NAD-binding domain HRD54_RS00470 PF07690 Major Facilitator Superfamily HRD54_RS00475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD54_RS00475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD54_RS00480 PF00230 Major intrinsic protein HRD54_RS00485 PF06005 Cell division protein ZapB HRD54_RS00495 PF01381 Helix-turn-helix HRD54_RS00500 PF03737 Aldolase/RraA HRD54_RS00505 PF01040 UbiA prenyltransferase family HRD54_RS00510 PF10431 C-terminal, D2-small domain, of ClpB protein HRD54_RS00510 PF07724 AAA domain (Cdc48 subfamily) HRD54_RS00510 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS00515 PF00227 Proteasome subunit HRD54_RS00520 PF05036 Sporulation related domain HRD54_RS00525 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS00530 PF00270 DEAD/DEAH box helicase HRD54_RS00530 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HRD54_RS00530 PF18074 Primosomal protein N C-terminal domain HRD54_RS00530 PF17764 3′ DNA-binding domain (3′BD) HRD54_RS00530 PF00271 Helicase conserved C-terminal domain HRD54_RS00535 PF01197 Ribosomal protein L31 HRD54_RS00540 PF07804 HipA-like C-terminal domain HRD54_RS00545 PF01340 Met Apo-repressor, MetJ HRD54_RS00550 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD54_RS00555 PF00742 Homoserine dehydrogenase HRD54_RS00555 PF00696 Amino acid kinase family HRD54_RS00555 PF03447 Homoserine dehydrogenase, NAD binding domain HRD54_RS00560 PF03350 Uncharacterized protein family, UPF0114 HRD54_RS00570 PF00311 Phosphoenolpyruvate carboxylase HRD54_RS00575 PF00535 Glycosyl transferase family 2 HRD54_RS00580 PF00875 DNA photolyase HRD54_RS00580 PF03441 FAD binding domain of DNA photolyase HRD54_RS00585 PF08946 Osmosensory transporter coiled coil HRD54_RS00585 PF00083 Sugar (and other) transporter HRD54_RS00590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS00590 PF03466 LysR substrate binding domain HRD54_RS00595 PF07687 Peptidase dimerisation domain HRD54_RS00595 PF01546 Peptidase family M20/M25/M40 HRD54_RS00610 PF00205 Thiamine pyrophosphate enzyme, central domain HRD54_RS00610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD54_RS00610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD54_RS00615 PF01546 Peptidase family M20/M25/M40 HRD54_RS00615 PF07687 Peptidase dimerisation domain HRD54_RS00620 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRD54_RS00620 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRD54_RS00625 PF00696 Amino acid kinase family HRD54_RS00630 PF00764 Arginosuccinate synthase HRD54_RS00635 PF00206 Lyase HRD54_RS00635 PF14698 Argininosuccinate lyase C-terminal HRD54_RS00640 PF03466 LysR substrate binding domain HRD54_RS00640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS00645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRD54_RS00645 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS00650 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS00655 PF07226 Protein of unknown function (DUF1422) HRD54_RS00660 PF05958 tRNA (Uracil-5-)-methyltransferase HRD54_RS00665 PF00593 TonB dependent receptor HRD54_RS00665 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS00670 PF01177 Asp/Glu/Hydantoin racemase HRD54_RS00705 PF01565 FAD binding domain HRD54_RS00705 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HRD54_RS00710 PF02237 Biotin protein ligase C terminal domain HRD54_RS00710 PF03099 Biotin/lipoate A/B protein ligase family HRD54_RS00710 PF08279 HTH domain HRD54_RS00715 PF00485 Phosphoribulokinase / Uridine kinase family HRD54_RS00740 PF03143 Elongation factor Tu C-terminal domain HRD54_RS00740 PF03144 Elongation factor Tu domain 2 HRD54_RS00740 PF00009 Elongation factor Tu GTP binding domain HRD54_RS00745 PF04324 BFD-like [2Fe-2S] binding domain HRD54_RS00750 PF00210 Ferritin-like domain HRD54_RS00755 PF00338 Ribosomal protein S10p/S20e HRD54_RS00760 PF00297 Ribosomal protein L3 HRD54_RS00765 PF00573 Ribosomal protein L4/L1 family HRD54_RS00770 PF00276 Ribosomal protein L23 HRD54_RS00775 PF00181 Ribosomal Proteins L2, RNA binding domain HRD54_RS00775 PF03947 Ribosomal Proteins L2, C-terminal domain HRD54_RS00780 PF00203 Ribosomal protein S19 HRD54_RS00785 PF00237 Ribosomal protein L22p/L17e HRD54_RS00790 PF07650 KH domain HRD54_RS00790 PF00189 Ribosomal protein S3, C-terminal domain HRD54_RS00795 PF00252 Ribosomal protein L16p/L10e HRD54_RS00800 PF00831 Ribosomal L29 protein HRD54_RS00805 PF00366 Ribosomal protein S17 HRD54_RS00810 PF00238 Ribosomal protein L14p/L23e HRD54_RS00815 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HRD54_RS00820 PF00673 ribosomal L5P family C-terminus HRD54_RS00820 PF00281 Ribosomal protein L5 HRD54_RS00825 PF00253 Ribosomal protein S14p/S29e HRD54_RS00830 PF00410 Ribosomal protein S8 HRD54_RS00835 PF00347 Ribosomal protein L6 HRD54_RS00840 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HRD54_RS00845 PF03719 Ribosomal protein S5, C-terminal domain HRD54_RS00845 PF00333 Ribosomal protein S5, N-terminal domain HRD54_RS00850 PF00327 Ribosomal protein L30p/L7e HRD54_RS00855 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HRD54_RS00860 PF00344 SecY translocase HRD54_RS00865 PF00444 Ribosomal protein L36 HRD54_RS00870 PF00416 Ribosomal protein S13/S18 HRD54_RS00875 PF00411 Ribosomal protein S11 HRD54_RS00880 PF00163 Ribosomal protein S4/S9 N-terminal domain HRD54_RS00880 PF01479 S4 domain HRD54_RS00885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HRD54_RS00885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HRD54_RS00885 PF01000 RNA polymerase Rpb3/RpoA insert domain HRD54_RS00890 PF01196 Ribosomal protein L17 HRD54_RS00895 PF13411 MerR HTH family regulatory protein HRD54_RS00900 PF03889 Alternative ribosome-rescue factor A HRD54_RS00905 PF01741 Large-conductance mechanosensitive channel, MscL HRD54_RS00910 PF02080 TrkA-C domain HRD54_RS00910 PF02254 TrkA-N domain HRD54_RS00915 PF01029 NusB family HRD54_RS00915 PF01189 16S rRNA methyltransferase RsmB/F HRD54_RS00920 PF00551 Formyl transferase HRD54_RS00920 PF02911 Formyl transferase, C-terminal domain HRD54_RS00925 PF01327 Polypeptide deformylase HRD54_RS00930 PF17782 DprA winged helix domain HRD54_RS00930 PF02481 DNA recombination-mediator protein A HRD54_RS00935 PF01396 Topoisomerase DNA binding C4 zinc finger HRD54_RS00940 PF01300 Telomere recombination HRD54_RS00945 PF08501 Shikimate dehydrogenase substrate binding domain HRD54_RS00945 PF01488 Shikimate / quinate 5-dehydrogenase HRD54_RS00945 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HRD54_RS00950 PF07369 Protein of unknown function (DUF1488) HRD54_RS00955 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS00995 PF03466 LysR substrate binding domain HRD54_RS00995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS01000 PF04219 Protein of unknown function, DUF HRD54_RS01005 PF01078 Magnesium chelatase, subunit ChlI HRD54_RS01005 PF13335 Magnesium chelatase, subunit ChlI C-terminal HRD54_RS01010 PF08046 IlvGEDA operon leader peptide HRD54_RS01015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD54_RS01015 PF00205 Thiamine pyrophosphate enzyme, central domain HRD54_RS01015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD54_RS01025 PF01063 Amino-transferase class IV HRD54_RS01030 PF00920 Dehydratase family HRD54_RS01035 PF00585 C-terminal regulatory domain of Threonine dehydratase HRD54_RS01035 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS01040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS01040 PF03466 LysR substrate binding domain HRD54_RS01045 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HRD54_RS01045 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HRD54_RS01050 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HRD54_RS01060 PF13361 UvrD-like helicase C-terminal domain HRD54_RS01060 PF00580 UvrD/REP helicase N-terminal domain HRD54_RS01065 PF02541 Ppx/GppA phosphatase family HRD54_RS01070 PF00270 DEAD/DEAH box helicase HRD54_RS01070 PF00271 Helicase conserved C-terminal domain HRD54_RS01075 PF00085 Thioredoxin HRD54_RS01080 PF07498 Rho termination factor, N-terminal domain HRD54_RS01080 PF07497 Rho termination factor, RNA-binding domain HRD54_RS01080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD54_RS01085 PF00953 Glycosyl transferase family 4 HRD54_RS01090 PF02706 Chain length determinant protein HRD54_RS01095 PF02350 UDP-N-acetylglucosamine 2-epimerase HRD54_RS01100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HRD54_RS01100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HRD54_RS01100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HRD54_RS01105 PF16363 GDP-mannose 4,6 dehydratase HRD54_RS01110 PF00483 Nucleotidyl transferase HRD54_RS01120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRD54_RS01125 PF01943 Polysaccharide biosynthesis protein HRD54_RS01130 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 HRD54_RS01135 PF06899 WzyE protein, O-antigen assembly polymerase HRD54_RS01140 PF03808 Glycosyl transferase WecB/TagA/CpsF family HRD54_RS01165 PF01797 Transposase IS200 like HRD54_RS01170 PF07282 Putative transposase DNA-binding domain HRD54_RS01170 PF01385 Probable transposase HRD54_RS01170 PF12323 Helix-turn-helix domain HRD54_RS01180 PF07719 Tetratricopeptide repeat HRD54_RS01180 PF07219 HemY protein N-terminus HRD54_RS01185 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HRD54_RS01190 PF02602 Uroporphyrinogen-III synthase HemD HRD54_RS01195 PF03900 Porphobilinogen deaminase, C-terminal domain HRD54_RS01195 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HRD54_RS01200 PF01295 Adenylate cyclase, class-I HRD54_RS01200 PF12633 Adenylate cyclase NT domain HRD54_RS01205 PF01491 Frataxin-like domain HRD54_RS01210 PF13627 Prokaryotic lipoprotein-attachment site HRD54_RS01215 PF01678 Diaminopimelate epimerase HRD54_RS01220 PF04340 Protein of unknown function, DUF484 HRD54_RS01225 PF00589 Phage integrase family HRD54_RS01225 PF02899 Phage integrase, N-terminal SAM-like domain HRD54_RS01230 PF13419 Haloacid dehalogenase-like hydrolase HRD54_RS01235 PF00580 UvrD/REP helicase N-terminal domain HRD54_RS01235 PF13361 UvrD-like helicase C-terminal domain HRD54_RS01245 PF00892 EamA-like transporter family HRD54_RS01250 PF03061 Thioesterase superfamily HRD54_RS01255 PF02253 Phospholipase A1 HRD54_RS01260 PF00570 HRDC domain HRD54_RS01260 PF00271 Helicase conserved C-terminal domain HRD54_RS01260 PF00270 DEAD/DEAH box helicase HRD54_RS01260 PF16124 RecQ zinc-binding HRD54_RS01260 PF09382 RQC domain HRD54_RS01265 PF12146 Serine aminopeptidase, S33 HRD54_RS01280 PF13953 PapC C-terminal domain HRD54_RS01280 PF13954 PapC N-terminal domain HRD54_RS01280 PF00577 Outer membrane usher protein HRD54_RS01285 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS01285 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS01290 PF00419 Fimbrial protein HRD54_RS01300 PF12794 Mechanosensitive ion channel inner membrane domain 1 HRD54_RS01300 PF12795 Mechanosensitive ion channel porin domain HRD54_RS01300 PF00924 Mechanosensitive ion channel HRD54_RS01305 PF02666 Phosphatidylserine decarboxylase HRD54_RS01310 PF03193 RsgA GTPase HRD54_RS01315 PF00929 Exonuclease HRD54_RS01345 PF08331 Domain of unknown function (DUF1730) HRD54_RS01350 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HRD54_RS01355 PF01520 N-acetylmuramoyl-L-alanine amidase HRD54_RS01360 PF01119 DNA mismatch repair protein, C-terminal domain HRD54_RS01360 PF08676 MutL C terminal dimerisation domain HRD54_RS01370 PF17209 Hfq protein HRD54_RS01375 PF01926 50S ribosome-binding GTPase HRD54_RS01375 PF13167 GTP-binding GTPase N-terminal HRD54_RS01375 PF16360 GTP-binding GTPase Middle Region HRD54_RS01380 PF01145 SPFH domain / Band 7 family HRD54_RS01380 PF12221 Bacterial membrane protein N terminal HRD54_RS01385 PF01145 SPFH domain / Band 7 family HRD54_RS01390 PF00709 Adenylosuccinate synthetase HRD54_RS01395 PF02082 Transcriptional regulator HRD54_RS01400 PF08461 Ribonuclease R winged-helix domain HRD54_RS01400 PF00773 RNB domain HRD54_RS01400 PF17876 Cold shock domain HRD54_RS01400 PF00575 S1 RNA binding domain HRD54_RS01400 PF08206 Ribonuclease B OB domain HRD54_RS01405 PF08032 RNA 2'-O ribose methyltransferase substrate binding HRD54_RS01405 PF00588 SpoU rRNA Methylase family HRD54_RS01410 PF01250 Ribosomal protein S6 HRD54_RS01415 PF00436 Single-strand binding protein family HRD54_RS01420 PF01084 Ribosomal protein S18 HRD54_RS01425 PF01281 Ribosomal protein L9, N-terminal domain HRD54_RS01425 PF03948 Ribosomal protein L9, C-terminal domain HRD54_RS01430 PF08525 Opacity-associated protein A N-terminal motif HRD54_RS01430 PF04225 Opacity-associated protein A LysM-like domain HRD54_RS01435 PF01197 Ribosomal protein L31 HRD54_RS01440 PF00444 Ribosomal protein L36 HRD54_RS01445 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment HRD54_RS01450 PF00171 Aldehyde dehydrogenase family HRD54_RS01455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD54_RS01455 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HRD54_RS01460 PF00459 Inositol monophosphatase family HRD54_RS01465 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HRD54_RS01470 PF06526 Protein of unknown function (DUF1107) HRD54_RS01475 PF00571 CBS domain HRD54_RS01475 PF01595 Cyclin M transmembrane N-terminal domain HRD54_RS01475 PF03471 Transporter associated domain HRD54_RS01480 PF01625 Peptide methionine sulfoxide reductase HRD54_RS01485 PF01103 Surface antigen HRD54_RS01485 PF17243 POTRA domain TamA domain 1 HRD54_RS01485 PF07244 Surface antigen variable number repeat HRD54_RS01490 PF04357 TamB, inner membrane protein subunit of TAM complex HRD54_RS01495 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HRD54_RS01515 PF00719 Inorganic pyrophosphatase HRD54_RS01520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HRD54_RS01525 PF02875 Mur ligase family, glutamate ligase domain HRD54_RS01525 PF08245 Mur ligase middle domain HRD54_RS01525 PF01225 Mur ligase family, catalytic domain HRD54_RS01530 PF02863 Arginine repressor, C-terminal domain HRD54_RS01530 PF01316 Arginine repressor, DNA binding domain HRD54_RS01535 PF00056 lactate/malate dehydrogenase, NAD binding domain HRD54_RS01535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HRD54_RS01540 PF13693 Winged helix-turn-helix DNA-binding HRD54_RS01555 PF00348 Polyprenyl synthetase HRD54_RS01560 PF00829 Ribosomal prokaryotic L21 protein HRD54_RS01565 PF01016 Ribosomal L27 protein HRD54_RS01570 PF01926 50S ribosome-binding GTPase HRD54_RS01570 PF01018 GTP1/OBG HRD54_RS01575 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HRD54_RS01580 PF03449 Transcription elongation factor, N-terminal HRD54_RS01580 PF01272 Transcription elongation factor, GreA/GreB, C-term HRD54_RS01585 PF01985 CRS1 / YhbY (CRM) domain HRD54_RS01590 PF01728 FtsJ-like methyltransferase HRD54_RS01595 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS01595 PF01434 Peptidase family M41 HRD54_RS01595 PF06480 FtsH Extracellular HRD54_RS01595 PF17862 AAA+ lid domain HRD54_RS01600 PF00809 Pterin binding enzyme HRD54_RS01605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRD54_RS01605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRD54_RS01605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRD54_RS01605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRD54_RS01610 PF03840 Preprotein translocase SecG subunit HRD54_RS01625 PF02576 RimP N-terminal domain HRD54_RS01625 PF17384 RimP C-terminal SH3 domain HRD54_RS01630 PF08529 NusA N-terminal domain HRD54_RS01630 PF00575 S1 RNA binding domain HRD54_RS01630 PF13184 NusA-like KH domain HRD54_RS01635 PF00009 Elongation factor Tu GTP binding domain HRD54_RS01635 PF11987 Translation-initiation factor 2 HRD54_RS01635 PF08364 Bacterial translation initiation factor IF-2 associated region HRD54_RS01635 PF04760 Translation initiation factor IF-2, N-terminal region HRD54_RS01635 PF03144 Elongation factor Tu domain 2 HRD54_RS01640 PF02033 Ribosome-binding factor A HRD54_RS01645 PF01509 TruB family pseudouridylate synthase (N terminal domain) HRD54_RS01645 PF09157 Pseudouridine synthase II TruB, C-terminal HRD54_RS01645 PF16198 tRNA pseudouridylate synthase B C-terminal domain HRD54_RS01650 PF00312 Ribosomal protein S15 HRD54_RS01655 PF01138 3' exoribonuclease family, domain 1 HRD54_RS01655 PF00013 KH domain HRD54_RS01655 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HRD54_RS01655 PF03725 3' exoribonuclease family, domain 2 HRD54_RS01655 PF00575 S1 RNA binding domain HRD54_RS01660 PF07719 Tetratricopeptide repeat HRD54_RS01660 PF13181 Tetratricopeptide repeat HRD54_RS01665 PF12343 Cold shock protein DEAD box A HRD54_RS01665 PF00270 DEAD/DEAH box helicase HRD54_RS01665 PF00271 Helicase conserved C-terminal domain HRD54_RS01665 PF03880 DbpA RNA binding domain HRD54_RS01670 PF13309 HTH domain HRD54_RS01670 PF08348 YheO-like PAS domain HRD54_RS01680 PF01042 Endoribonuclease L-PSP HRD54_RS01685 PF07690 Major Facilitator Superfamily HRD54_RS01710 PF00072 Response regulator receiver domain HRD54_RS01710 PF04397 LytTr DNA-binding domain HRD54_RS01715 PF06580 Histidine kinase HRD54_RS01715 PF07694 5TMR of 5TMR-LYT HRD54_RS01720 PF00529 HlyD membrane-fusion protein of T1SS HRD54_RS01720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD54_RS01735 PF00419 Fimbrial protein HRD54_RS01740 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS01740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS01745 PF00577 Outer membrane usher protein HRD54_RS01745 PF13953 PapC C-terminal domain HRD54_RS01745 PF13954 PapC N-terminal domain HRD54_RS01750 PF00419 Fimbrial protein HRD54_RS01775 PF01136 Peptidase family U32 HRD54_RS01780 PF01136 Peptidase family U32 HRD54_RS01785 PF02036 SCP-2 sterol transfer family HRD54_RS01790 PF13508 Acetyltransferase (GNAT) domain HRD54_RS01795 PF01541 GIY-YIG catalytic domain HRD54_RS01800 PF07338 Protein of unknown function (DUF1471) HRD54_RS01825 PF03477 ATP cone domain HRD54_RS01825 PF13597 Anaerobic ribonucleoside-triphosphate reductase HRD54_RS01830 PF01042 Endoribonuclease L-PSP HRD54_RS01835 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HRD54_RS01835 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HRD54_RS01840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HRD54_RS01840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HRD54_RS01850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HRD54_RS01850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HRD54_RS01855 PF06877 Regulator of ribonuclease activity B HRD54_RS01860 PF02678 Pirin HRD54_RS01860 PF05726 Pirin C-terminal cupin domain HRD54_RS01865 PF13978 Protein of unknown function (DUF4223) HRD54_RS01870 PF00583 Acetyltransferase (GNAT) family HRD54_RS01875 PF10458 Valyl tRNA synthetase tRNA binding arm HRD54_RS01875 PF08264 Anticodon-binding domain of tRNA HRD54_RS01875 PF00133 tRNA synthetases class I (I, L, M and V) HRD54_RS01880 PF04364 DNA polymerase III chi subunit, HolC HRD54_RS01885 PF00883 Cytosol aminopeptidase family, catalytic domain HRD54_RS01885 PF02789 Cytosol aminopeptidase family, N-terminal domain HRD54_RS01890 PF03739 Lipopolysaccharide export system permease LptF/LptG HRD54_RS01895 PF03739 Lipopolysaccharide export system permease LptF/LptG HRD54_RS01900 PF00144 Beta-lactamase HRD54_RS01935 PF00472 RF-1 domain HRD54_RS01945 PF00455 DeoR C terminal sensor domain HRD54_RS01945 PF08220 DeoR-like helix-turn-helix domain HRD54_RS01950 PF01791 DeoC/LacD family aldolase HRD54_RS01955 PF00294 pfkB family carbohydrate kinase HRD54_RS01960 PF13580 SIS domain HRD54_RS01965 PF02378 Phosphotransferase system, EIIC HRD54_RS01965 PF00367 phosphotransferase system, EIIB HRD54_RS01970 PF01380 SIS domain HRD54_RS01970 PF01418 Helix-turn-helix domain, rpiR family HRD54_RS01985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD54_RS01985 PF00205 Thiamine pyrophosphate enzyme, central domain HRD54_RS01985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD54_RS01990 PF01842 ACT domain HRD54_RS01995 PF01545 Cation efflux family HRD54_RS02010 PF00860 Permease family HRD54_RS02015 PF13302 Acetyltransferase (GNAT) domain HRD54_RS02020 PF00999 Sodium/hydrogen exchanger family HRD54_RS02025 PF00892 EamA-like transporter family HRD54_RS02030 PF03466 LysR substrate binding domain HRD54_RS02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS02035 PF08267 Cobalamin-independent synthase, N-terminal domain HRD54_RS02035 PF01717 Cobalamin-independent synthase, Catalytic domain HRD54_RS02045 PF06078 Bacterial protein of unknown function (DUF937) HRD54_RS02050 PF01048 Phosphorylase superfamily HRD54_RS02060 PF09335 SNARE associated Golgi protein HRD54_RS02065 PF02646 RmuC family HRD54_RS02070 PF01209 ubiE/COQ5 methyltransferase family HRD54_RS02075 PF02036 SCP-2 sterol transfer family HRD54_RS02080 PF03109 ABC1 family HRD54_RS02085 PF02416 mttA/Hcf106 family HRD54_RS02095 PF00902 Sec-independent protein translocase protein (TatC) HRD54_RS02100 PF02357 Transcription termination factor nusG HRD54_RS02105 PF01385 Probable transposase HRD54_RS02105 PF12323 Helix-turn-helix domain HRD54_RS02105 PF07282 Putative transposase DNA-binding domain HRD54_RS02110 PF01797 Transposase IS200 like HRD54_RS02115 PF03575 Peptidase family S51 HRD54_RS02120 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HRD54_RS02125 PF00970 Oxidoreductase FAD-binding domain HRD54_RS02125 PF00175 Oxidoreductase NAD-binding domain HRD54_RS02130 PF00108 Thiolase, N-terminal domain HRD54_RS02130 PF02803 Thiolase, C-terminal domain HRD54_RS02135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HRD54_RS02135 PF00378 Enoyl-CoA hydratase/isomerase HRD54_RS02135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HRD54_RS02140 PF00557 Metallopeptidase family M24 HRD54_RS02145 PF01205 Uncharacterized protein family UPF0029 HRD54_RS02145 PF09186 Domain of unknown function (DUF1949) HRD54_RS02150 PF02386 Cation transport protein HRD54_RS02155 PF12724 Flavodoxin domain HRD54_RS02185 PF01566 Natural resistance-associated macrophage protein HRD54_RS02190 PF03746 LamB/YcsF family HRD54_RS02195 PF02682 Carboxyltransferase domain, subdomain C and D HRD54_RS02200 PF00364 Biotin-requiring enzyme HRD54_RS02200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HRD54_RS02200 PF00289 Biotin carboxylase, N-terminal domain HRD54_RS02200 PF02785 Biotin carboxylase C-terminal domain HRD54_RS02205 PF01925 Sulfite exporter TauE/SafE HRD54_RS02220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS02220 PF03466 LysR substrate binding domain HRD54_RS02225 PF00072 Response regulator receiver domain HRD54_RS02225 PF00196 Bacterial regulatory proteins, luxR family HRD54_RS02230 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HRD54_RS02230 PF07730 Histidine kinase HRD54_RS02230 PF00672 HAMP domain HRD54_RS02230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS02235 PF07690 Major Facilitator Superfamily HRD54_RS02240 PF14710 Respiratory nitrate reductase alpha N-terminal HRD54_RS02240 PF01568 Molydopterin dinucleotide binding domain HRD54_RS02240 PF00384 Molybdopterin oxidoreductase HRD54_RS02245 PF14711 Respiratory nitrate reductase beta C-terminal HRD54_RS02245 PF13247 4Fe-4S dicluster domain HRD54_RS02250 PF02613 Nitrate reductase delta subunit HRD54_RS02255 PF02665 Nitrate reductase gamma subunit HRD54_RS02260 PF01070 FMN-dependent dehydrogenase HRD54_RS02265 PF00884 Sulfatase HRD54_RS02265 PF08019 Phosphoethanolamine transferase EptA/EptB HRD54_RS02280 PF01590 GAF domain HRD54_RS02280 PF00158 Sigma-54 interaction domain HRD54_RS02285 PF12798 4Fe-4S binding domain HRD54_RS02285 PF00037 4Fe-4S binding domain HRD54_RS02290 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HRD54_RS02295 PF01455 HupF/HypC family HRD54_RS02300 PF00893 Small Multidrug Resistance protein HRD54_RS02305 PF02313 Fumarate reductase subunit D HRD54_RS02310 PF02300 Fumarate reductase subunit C HRD54_RS02315 PF13085 2Fe-2S iron-sulfur cluster binding domain HRD54_RS02315 PF13183 4Fe-4S dicluster domain HRD54_RS02320 PF02910 Fumarate reductase flavoprotein C-term HRD54_RS02320 PF00890 FAD binding domain HRD54_RS02325 PF00152 tRNA synthetases class II (D, K and N) HRD54_RS02330 PF03009 Glycerophosphoryl diester phosphodiesterase family HRD54_RS02335 PF07690 Major Facilitator Superfamily HRD54_RS02340 PF04324 BFD-like [2Fe-2S] binding domain HRD54_RS02340 PF01266 FAD dependent oxidoreductase HRD54_RS02345 PF00890 FAD binding domain HRD54_RS02350 PF02754 Cysteine-rich domain HRD54_RS02350 PF13183 4Fe-4S dicluster domain HRD54_RS02355 PF00465 Iron-containing alcohol dehydrogenase HRD54_RS02360 PF02592 Putative vitamin uptake transporter HRD54_RS02365 PF01206 Sulfurtransferase TusA HRD54_RS02375 PF12323 Helix-turn-helix domain HRD54_RS02375 PF07282 Putative transposase DNA-binding domain HRD54_RS02375 PF01385 Probable transposase HRD54_RS02380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD54_RS02380 PF00529 HlyD membrane-fusion protein of T1SS HRD54_RS02385 PF00873 AcrB/AcrD/AcrF family HRD54_RS02390 PF00403 Heavy-metal-associated domain HRD54_RS02395 PF07947 YhhN family HRD54_RS02405 PF06611 Protein of unknown function (DUF1145) HRD54_RS02415 PF02881 SRP54-type protein, helical bundle domain HRD54_RS02415 PF00448 SRP54-type protein, GTPase domain HRD54_RS02420 PF00005 ABC transporter HRD54_RS02425 PF18075 FtsX extracellular domain HRD54_RS02425 PF02687 FtsX-like permease family HRD54_RS02430 PF04542 Sigma-70 region 2 HRD54_RS02430 PF00140 Sigma-70 factor, region 1.2 HRD54_RS02430 PF04545 Sigma-70, region 4 HRD54_RS02435 PF02595 Glycerate kinase family HRD54_RS02440 PF12568 Acetyltransferase (GNAT) domain, PanZ HRD54_RS02445 PF07690 Major Facilitator Superfamily HRD54_RS02450 PF01047 MarR family HRD54_RS02455 PF01435 Peptidase family M48 HRD54_RS02460 PF00005 ABC transporter HRD54_RS02460 PF17912 MalK OB fold domain HRD54_RS02465 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS02470 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS02475 PF13416 Bacterial extracellular solute-binding protein HRD54_RS02480 PF03009 Glycerophosphoryl diester phosphodiesterase family HRD54_RS02485 PF07690 Major Facilitator Superfamily HRD54_RS02510 PF02954 Bacterial regulatory protein, Fis family HRD54_RS02515 PF01207 Dihydrouridine synthase (Dus) HRD54_RS02525 PF00474 Sodium:solute symporter family HRD54_RS02530 PF06196 Protein of unknown function (DUF997) HRD54_RS02535 PF02785 Biotin carboxylase C-terminal domain HRD54_RS02535 PF00289 Biotin carboxylase, N-terminal domain HRD54_RS02535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HRD54_RS02540 PF00364 Biotin-requiring enzyme HRD54_RS02545 PF01220 Dehydroquinase class II HRD54_RS02550 PF00107 Zinc-binding dehydrogenase HRD54_RS02550 PF08240 Alcohol dehydrogenase GroES-like domain HRD54_RS02560 PF04085 rod shape-determining protein MreC HRD54_RS02565 PF04093 rod shape-determining protein MreD HRD54_RS02570 PF02545 Maf-like protein HRD54_RS02575 PF00575 S1 RNA binding domain HRD54_RS02575 PF10150 Ribonuclease E/G family HRD54_RS02580 PF13502 AsmA-like C-terminal region HRD54_RS02580 PF13116 Protein of unknown function HRD54_RS02585 PF00795 Carbon-nitrogen hydrolase HRD54_RS02590 PF01523 Putative modulator of DNA gyrase HRD54_RS02600 PF01337 Barstar (barnase inhibitor) HRD54_RS02605 PF04751 Protein of unknown function (DUF615) HRD54_RS02610 PF01523 Putative modulator of DNA gyrase HRD54_RS02615 PF01272 Transcription elongation factor, GreA/GreB, C-term HRD54_RS02615 PF14760 Rnk N-terminus HRD54_RS02620 PF00381 PTS HPr component phosphorylation site HRD54_RS02625 PF03668 P-loop ATPase protein family HRD54_RS02630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRD54_RS02635 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HRD54_RS02640 PF00309 Sigma-54 factor, Activator interacting domain (AID) HRD54_RS02640 PF04963 Sigma-54 factor, core binding domain HRD54_RS02640 PF04552 Sigma-54, DNA binding domain HRD54_RS02645 PF12399 Branched-chain amino acid ATP-binding cassette transporter HRD54_RS02645 PF00005 ABC transporter HRD54_RS02650 PF03968 OstA-like protein HRD54_RS02655 PF06835 Lipopolysaccharide-assembly, LptC-related HRD54_RS02665 PF00571 CBS domain HRD54_RS02665 PF01380 SIS domain HRD54_RS02670 PF01699 Sodium/calcium exchanger protein HRD54_RS02675 PF00005 ABC transporter HRD54_RS02680 PF02405 Permease MlaE HRD54_RS02685 PF02470 MlaD protein HRD54_RS02690 PF05494 MlaC protein HRD54_RS02700 PF01722 BolA-like protein HRD54_RS02705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HRD54_RS02715 PF13180 PDZ domain HRD54_RS02720 PF00595 PDZ domain HRD54_RS02720 PF13180 PDZ domain HRD54_RS02725 PF06295 Protein of unknown function (DUF1043) HRD54_RS02730 PF03969 AFG1-like ATPase HRD54_RS02735 PF00572 Ribosomal protein L13 HRD54_RS02740 PF00380 Ribosomal protein S9/S16 HRD54_RS02745 PF00043 Glutathione S-transferase, C-terminal domain HRD54_RS02745 PF02798 Glutathione S-transferase, N-terminal domain HRD54_RS02750 PF04386 Stringent starvation protein B HRD54_RS02755 PF13411 MerR HTH family regulatory protein HRD54_RS02760 PF01546 Peptidase family M20/M25/M40 HRD54_RS02760 PF07687 Peptidase dimerisation domain HRD54_RS02765 PF03606 C4-dicarboxylate anaerobic carrier HRD54_RS02770 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HRD54_RS02770 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS02775 PF00310 Glutamine amidotransferases class-II HRD54_RS02775 PF01493 GXGXG motif HRD54_RS02775 PF01645 Conserved region in glutamate synthase HRD54_RS02775 PF04898 Glutamate synthase central domain HRD54_RS02780 PF00072 Response regulator receiver domain HRD54_RS02780 PF00989 PAS fold HRD54_RS02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS02780 PF01627 Hpt domain HRD54_RS02780 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS02780 PF18415 Histidine kinase receptor ArcB trans-membrane domain HRD54_RS02790 PF00912 Transglycosylase HRD54_RS02795 PF12833 Helix-turn-helix domain HRD54_RS02800 PF01774 UreD urease accessory protein HRD54_RS02805 PF00547 Urease, gamma subunit HRD54_RS02810 PF00699 Urease beta subunit HRD54_RS02815 PF00449 Urease alpha-subunit, N-terminal domain HRD54_RS02815 PF01979 Amidohydrolase family HRD54_RS02820 PF05194 UreE urease accessory protein, C-terminal domain HRD54_RS02820 PF02814 UreE urease accessory protein, N-terminal domain HRD54_RS02825 PF01730 UreF HRD54_RS02830 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRD54_RS02835 PF04972 BON domain HRD54_RS02840 PF13580 SIS domain HRD54_RS02845 PF02021 Uncharacterised protein family UPF0102 HRD54_RS02850 PF04348 LppC putative lipoprotein HRD54_RS02855 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD54_RS02865 PF02678 Pirin HRD54_RS02865 PF17954 Quercetinase C-terminal cupin domain HRD54_RS02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS02870 PF03466 LysR substrate binding domain HRD54_RS02875 PF07681 DoxX HRD54_RS02885 PF07332 Putative Actinobacterial Holin-X, holin superfamily III HRD54_RS02890 PF05957 Bacterial protein of unknown function (DUF883) HRD54_RS02895 PF09335 SNARE associated Golgi protein HRD54_RS02900 PF00375 Sodium:dicarboxylate symporter family HRD54_RS02905 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS02905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HRD54_RS02915 PF05193 Peptidase M16 inactive domain HRD54_RS02915 PF00675 Insulinase (Peptidase family M16) HRD54_RS02920 PF06472 ABC transporter transmembrane region 2 HRD54_RS02920 PF00005 ABC transporter HRD54_RS02925 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS02935 PF08281 Sigma-70, region 4 HRD54_RS02935 PF04542 Sigma-70 region 2 HRD54_RS02945 PF12848 ABC transporter HRD54_RS02945 PF00005 ABC transporter HRD54_RS02950 PF01464 Transglycosylase SLT domain HRD54_RS02950 PF14718 Soluble lytic murein transglycosylase L domain HRD54_RS02955 PF01371 Trp repressor protein HRD54_RS02960 PF01931 Protein of unknown function DUF84 HRD54_RS02965 PF00300 Histidine phosphatase superfamily (branch 1) HRD54_RS02970 PF12833 Helix-turn-helix domain HRD54_RS02970 PF06445 GyrI-like small molecule binding domain HRD54_RS02975 PF05981 CreA protein HRD54_RS02980 PF00072 Response regulator receiver domain HRD54_RS02980 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS02985 PF13840 ACT domain HRD54_RS02985 PF00696 Amino acid kinase family HRD54_RS02985 PF01842 ACT domain HRD54_RS02985 PF00742 Homoserine dehydrogenase HRD54_RS02985 PF03447 Homoserine dehydrogenase, NAD binding domain HRD54_RS02990 PF00288 GHMP kinases N terminal domain HRD54_RS02990 PF08544 GHMP kinases C terminal HRD54_RS02995 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS02995 PF14821 Threonine synthase N terminus HRD54_RS03005 PF03883 Peroxide stress protein YaaA HRD54_RS03010 PF00923 Transaldolase/Fructose-6-phosphate aldolase HRD54_RS03020 PF00994 Probable molybdopterin binding domain HRD54_RS03025 PF00012 Hsp70 protein HRD54_RS03030 PF00226 DnaJ domain HRD54_RS03030 PF00684 DnaJ central domain HRD54_RS03030 PF01556 DnaJ C terminal domain HRD54_RS03035 PF06965 Na+/H+ antiporter 1 HRD54_RS03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS03040 PF03466 LysR substrate binding domain HRD54_RS03045 PF01649 Ribosomal protein S20 HRD54_RS03055 PF06574 FAD synthetase HRD54_RS03055 PF01687 Riboflavin kinase HRD54_RS03060 PF06827 Zinc finger found in FPG and IleRS HRD54_RS03060 PF00133 tRNA synthetases class I (I, L, M and V) HRD54_RS03060 PF08264 Anticodon-binding domain of tRNA HRD54_RS03065 PF01252 Signal peptidase (SPase) II HRD54_RS03070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD54_RS03075 PF02401 LytB protein HRD54_RS03080 PF05173 Dihydrodipicolinate reductase, C-terminus HRD54_RS03080 PF01113 Dihydrodipicolinate reductase, N-terminus HRD54_RS03085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HRD54_RS03085 PF00117 Glutamine amidotransferase class-I HRD54_RS03090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HRD54_RS03090 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HRD54_RS03090 PF02142 MGS-like domain HRD54_RS03100 PF02369 Bacterial Ig-like domain (group 1) HRD54_RS03100 PF11924 Inverse autotransporter, beta-domain HRD54_RS03100 PF09134 Invasin, domain 3 HRD54_RS03105 PF00248 Aldo/keto reductase family HRD54_RS03110 PF00465 Iron-containing alcohol dehydrogenase HRD54_RS03115 PF08241 Methyltransferase domain HRD54_RS03120 PF09335 SNARE associated Golgi protein HRD54_RS03125 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD54_RS03130 PF01618 MotA/TolQ/ExbB proton channel family HRD54_RS03135 PF02472 Biopolymer transport protein ExbD/TolR HRD54_RS03145 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HRD54_RS03145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HRD54_RS03150 PF13247 4Fe-4S dicluster domain HRD54_RS03155 PF03916 Polysulphide reductase, NrfD HRD54_RS03160 PF00374 Nickel-dependent hydrogenase HRD54_RS03165 PF01750 Hydrogenase maturation protease HRD54_RS03170 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HRD54_RS03175 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRD54_RS03180 PF01455 HupF/HypC family HRD54_RS03185 PF01924 Hydrogenase formation hypA family HRD54_RS03190 PF00586 AIR synthase related protein, N-terminal domain HRD54_RS03190 PF02769 AIR synthase related protein, C-terminal domain HRD54_RS03195 PF04143 Sulphur transport HRD54_RS03200 PF01206 Sulfurtransferase TusA HRD54_RS03205 PF04381 Putative exonuclease, RdgC HRD54_RS03210 PF13609 Gram-negative porin HRD54_RS03215 PF00149 Calcineurin-like phosphoesterase HRD54_RS03215 PF02872 5'-nucleotidase, C-terminal domain HRD54_RS03220 PF00445 Ribonuclease T2 family HRD54_RS03225 PF17936 Bacterial Ig domain HRD54_RS03225 PF02872 5'-nucleotidase, C-terminal domain HRD54_RS03225 PF00149 Calcineurin-like phosphoesterase HRD54_RS03235 PF13476 AAA domain HRD54_RS03240 PF12320 Type 5 capsule protein repressor C-terminal domain HRD54_RS03240 PF00149 Calcineurin-like phosphoesterase HRD54_RS03245 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS03245 PF00072 Response regulator receiver domain HRD54_RS03250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS03250 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS03250 PF00989 PAS fold HRD54_RS03250 PF11808 Phosphate regulon sensor protein PhoR HRD54_RS03255 PF05525 Branched-chain amino acid transport protein HRD54_RS03290 PF01292 Prokaryotic cytochrome b561 HRD54_RS03295 PF13247 4Fe-4S dicluster domain HRD54_RS03305 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain HRD54_RS03305 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 HRD54_RS03310 PF12800 4Fe-4S binding domain HRD54_RS03310 PF13247 4Fe-4S dicluster domain HRD54_RS03320 PF00578 AhpC/TSA family HRD54_RS03320 PF10417 C-terminal domain of 1-Cys peroxiredoxin HRD54_RS03325 PF04336 Acyl carrier protein phosphodiesterase HRD54_RS03330 PF02547 Queuosine biosynthesis protein HRD54_RS03335 PF01702 Queuine tRNA-ribosyltransferase HRD54_RS03340 PF02699 Preprotein translocase subunit HRD54_RS03345 PF07549 SecD/SecF GG Motif HRD54_RS03345 PF02355 Protein export membrane protein HRD54_RS03345 PF13721 SecD export protein N-terminal TM region HRD54_RS03350 PF07549 SecD/SecF GG Motif HRD54_RS03350 PF02355 Protein export membrane protein HRD54_RS03355 PF03477 ATP cone domain HRD54_RS03360 PF01872 RibD C-terminal domain HRD54_RS03360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HRD54_RS03365 PF00885 6,7-dimethyl-8-ribityllumazine synthase HRD54_RS03370 PF01029 NusB family HRD54_RS03375 PF00586 AIR synthase related protein, N-terminal domain HRD54_RS03375 PF02769 AIR synthase related protein, C-terminal domain HRD54_RS03380 PF08274 PhnA Zinc-Ribbon HRD54_RS03380 PF03831 PhnA domain HRD54_RS03385 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS03390 PF00294 pfkB family carbohydrate kinase HRD54_RS03395 PF13407 Periplasmic binding protein domain HRD54_RS03400 PF02653 Branched-chain amino acid transport system / permease component HRD54_RS03405 PF00005 ABC transporter HRD54_RS03410 PF05025 RbsD / FucU transport protein family HRD54_RS03415 PF02779 Transketolase, pyrimidine binding domain HRD54_RS03415 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HRD54_RS03415 PF02780 Transketolase, C-terminal domain HRD54_RS03420 PF00348 Polyprenyl synthetase HRD54_RS03425 PF02609 Exonuclease VII small subunit HRD54_RS03430 PF02568 Thiamine biosynthesis protein (ThiI) HRD54_RS03430 PF02926 THUMP domain HRD54_RS03445 PF01965 DJ-1/PfpI family HRD54_RS03450 PF08546 Ketopantoate reductase PanE/ApbA C terminal HRD54_RS03450 PF02558 Ketopantoate reductase PanE/ApbA HRD54_RS03455 PF04461 Protein of unknown function (DUF520) HRD54_RS03460 PF07690 Major Facilitator Superfamily HRD54_RS03465 PF01040 UbiA prenyltransferase family HRD54_RS03470 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HRD54_RS03475 PF00510 Cytochrome c oxidase subunit III HRD54_RS03480 PF00115 Cytochrome C and Quinol oxidase polypeptide I HRD54_RS03485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HRD54_RS03485 PF06481 COX Aromatic Rich Motif HRD54_RS03490 PF03502 Nucleoside-specific channel-forming protein, Tsx HRD54_RS03495 PF00270 DEAD/DEAH box helicase HRD54_RS03495 PF03880 DbpA RNA binding domain HRD54_RS03495 PF00271 Helicase conserved C-terminal domain HRD54_RS03500 PF07690 Major Facilitator Superfamily HRD54_RS03505 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HRD54_RS03505 PF03923 Uncharacterized lipoprotein HRD54_RS03510 PF01722 BolA-like protein HRD54_RS03515 PF05697 Bacterial trigger factor protein (TF) HRD54_RS03515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD54_RS03515 PF05698 Bacterial trigger factor protein (TF) C-terminus HRD54_RS03520 PF00574 Clp protease HRD54_RS03525 PF07724 AAA domain (Cdc48 subfamily) HRD54_RS03525 PF06689 ClpX C4-type zinc finger HRD54_RS03525 PF10431 C-terminal, D2-small domain, of ClpB protein HRD54_RS03530 PF02190 ATP-dependent protease La (LON) substrate-binding domain HRD54_RS03530 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS03530 PF05362 Lon protease (S16) C-terminal proteolytic domain HRD54_RS03535 PF00216 Bacterial DNA-binding protein HRD54_RS03540 PF13145 PPIC-type PPIASE domain HRD54_RS03545 PF10531 SLBB domain HRD54_RS03555 PF06508 Queuosine biosynthesis protein QueC HRD54_RS03560 PF01037 Lrp/AsnC ligand binding domain HRD54_RS03560 PF13404 AsnC-type helix-turn-helix domain HRD54_RS03565 PF00664 ABC transporter transmembrane region HRD54_RS03565 PF00005 ABC transporter HRD54_RS03570 PF00664 ABC transporter transmembrane region HRD54_RS03570 PF00005 ABC transporter HRD54_RS03575 PF00543 Nitrogen regulatory protein P-II HRD54_RS03580 PF00909 Ammonium Transporter Family HRD54_RS03595 PF05321 Haemolysin expression modulating protein HRD54_RS03605 PF00873 AcrB/AcrD/AcrF family HRD54_RS03610 PF00529 HlyD membrane-fusion protein of T1SS HRD54_RS03610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD54_RS03615 PF08361 MAATS-type transcriptional repressor, C-terminal region HRD54_RS03615 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS03620 PF02635 DsrE/DsrF-like family HRD54_RS03625 PF00924 Mechanosensitive ion channel HRD54_RS03625 PF12794 Mechanosensitive ion channel inner membrane domain 1 HRD54_RS03625 PF12795 Mechanosensitive ion channel porin domain HRD54_RS03640 PF00156 Phosphoribosyl transferase domain HRD54_RS03645 PF12169 DNA polymerase III subunits gamma and tau domain III HRD54_RS03645 PF12170 DNA polymerase III tau subunit V interacting with alpha HRD54_RS03645 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HRD54_RS03650 PF02575 YbaB/EbfC DNA-binding family HRD54_RS03655 PF13662 Toprim domain HRD54_RS03655 PF02132 RecR protein HRD54_RS03660 PF13722 5TM C-terminal transporter carbon starvation CstA HRD54_RS03660 PF02554 Carbon starvation protein CstA HRD54_RS03665 PF04328 Selenoprotein, putative HRD54_RS03670 PF07683 Cobalamin synthesis protein cobW C-terminal domain HRD54_RS03670 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRD54_RS03675 PF03313 Serine dehydratase alpha chain HRD54_RS03680 PF03606 C4-dicarboxylate anaerobic carrier HRD54_RS03685 PF07687 Peptidase dimerisation domain HRD54_RS03685 PF01546 Peptidase family M20/M25/M40 HRD54_RS03695 PF01554 MatE HRD54_RS03700 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRD54_RS03700 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain HRD54_RS03705 PF09370 Phosphoenolpyruvate hydrolase-like HRD54_RS03740 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) HRD54_RS03745 PF10518 TAT (twin-arginine translocation) pathway signal sequence HRD54_RS03745 PF00394 Multicopper oxidase HRD54_RS03745 PF07731 Multicopper oxidase HRD54_RS03745 PF07732 Multicopper oxidase HRD54_RS03750 PF00156 Phosphoribosyl transferase domain HRD54_RS03755 PF00484 Carbonic anhydrase HRD54_RS03760 PF00005 ABC transporter HRD54_RS03765 PF01061 ABC-2 type transporter HRD54_RS03770 PF07690 Major Facilitator Superfamily HRD54_RS03775 PF10735 Protein of unknown function (DUF2526) HRD54_RS03780 PF01435 Peptidase family M48 HRD54_RS03795 PF13247 4Fe-4S dicluster domain HRD54_RS03795 PF12800 4Fe-4S binding domain HRD54_RS03800 PF01568 Molydopterin dinucleotide binding domain HRD54_RS03800 PF00384 Molybdopterin oxidoreductase HRD54_RS03800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS03810 PF04261 Dyp-type peroxidase family HRD54_RS03825 PF13473 Cupredoxin-like domain HRD54_RS03830 PF10634 Fe2+ transport protein HRD54_RS03835 PF01527 Transposase HRD54_RS03855 PF03738 Glutathionylspermidine synthase preATP-grasp HRD54_RS03855 PF05257 CHAP domain HRD54_RS03860 PF03466 LysR substrate binding domain HRD54_RS03860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS03865 PF02447 GntP family permease HRD54_RS03870 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS03875 PF08402 TOBE domain HRD54_RS03875 PF00005 ABC transporter HRD54_RS03880 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS03890 PF07690 Major Facilitator Superfamily HRD54_RS03895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS03895 PF07730 Histidine kinase HRD54_RS03895 PF05231 MASE1 HRD54_RS03900 PF00072 Response regulator receiver domain HRD54_RS03900 PF00196 Bacterial regulatory proteins, luxR family HRD54_RS03905 PF02261 Aspartate decarboxylase HRD54_RS03910 PF02569 Pantoate-beta-alanine ligase HRD54_RS03915 PF02548 Ketopantoate hydroxymethyltransferase HRD54_RS03920 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HRD54_RS03925 PF01743 Poly A polymerase head domain HRD54_RS03925 PF12626 Polymerase A arginine-rich C-terminus HRD54_RS03925 PF12627 Probable RNA and SrmB- binding site of polymerase A HRD54_RS03935 PF01258 Prokaryotic dksA/traR C4-type zinc finger HRD54_RS03940 PF17746 SfsA N-terminal OB domain HRD54_RS03940 PF03749 Sugar fermentation stimulation protein RE domain HRD54_RS03945 PF08482 ATP-dependent helicase C-terminal HRD54_RS03945 PF04408 Helicase associated domain (HA2) HRD54_RS03945 PF00271 Helicase conserved C-terminal domain HRD54_RS03945 PF00270 DEAD/DEAH box helicase HRD54_RS03950 PF14814 Bifunctional transglycosylase second domain HRD54_RS03950 PF00905 Penicillin binding protein transpeptidase domain HRD54_RS03950 PF00912 Transglycosylase HRD54_RS03950 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal HRD54_RS03955 PF00202 Aminotransferase class-III HRD54_RS03960 PF01521 Iron-sulphur cluster biosynthesis HRD54_RS03965 PF01497 Periplasmic binding protein HRD54_RS03970 PF01048 Phosphorylase superfamily HRD54_RS03975 PF01966 HD domain HRD54_RS03975 PF13286 Phosphohydrolase-associated domain HRD54_RS03980 PF01938 TRAM domain HRD54_RS03980 PF05958 tRNA (Uracil-5-)-methyltransferase HRD54_RS03985 PF02824 TGS domain HRD54_RS03985 PF13291 ACT domain HRD54_RS03985 PF04607 Region found in RelA / SpoT proteins HRD54_RS03990 PF03819 MazG nucleotide pyrophosphohydrolase domain HRD54_RS03995 PF06418 CTP synthase N-terminus HRD54_RS03995 PF00117 Glutamine amidotransferase class-I HRD54_RS04000 PF03952 Enolase, N-terminal domain HRD54_RS04000 PF00113 Enolase, C-terminal TIM barrel domain HRD54_RS04005 PF00939 Sodium:sulfate symporter transmembrane region HRD54_RS04010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD54_RS04010 PF00205 Thiamine pyrophosphate enzyme, central domain HRD54_RS04010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD54_RS04015 PF01464 Transglycosylase SLT domain HRD54_RS04015 PF01476 LysM domain HRD54_RS04020 PF00753 Metallo-beta-lactamase superfamily HRD54_RS04020 PF16123 Hydroxyacylglutathione hydrolase C-terminus HRD54_RS04025 PF08241 Methyltransferase domain HRD54_RS04030 PF00075 RNase H HRD54_RS04035 PF00929 Exonuclease HRD54_RS04070 PF01032 FecCD transport family HRD54_RS04075 PF00005 ABC transporter HRD54_RS04085 PF04183 IucA / IucC family HRD54_RS04085 PF06276 Ferric iron reductase FhuF-like transporter HRD54_RS04090 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS04090 PF00593 TonB dependent receptor HRD54_RS04095 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HRD54_RS04100 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS04105 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain HRD54_RS04110 PF07690 Major Facilitator Superfamily HRD54_RS04125 PF02779 Transketolase, pyrimidine binding domain HRD54_RS04125 PF02780 Transketolase, C-terminal domain HRD54_RS04125 PF00456 Transketolase, thiamine diphosphate binding domain HRD54_RS04130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HRD54_RS04130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HRD54_RS04135 PF00162 Phosphoglycerate kinase HRD54_RS04140 PF01116 Fructose-bisphosphate aldolase class-II HRD54_RS04145 PF05154 TM2 domain HRD54_RS04150 PF00854 POT family HRD54_RS04155 PF01613 Flavin reductase like domain HRD54_RS04165 PF01047 MarR family HRD54_RS04170 PF02028 BCCT, betaine/carnitine/choline family transporter HRD54_RS04185 PF12706 Beta-lactamase superfamily domain HRD54_RS04185 PF00753 Metallo-beta-lactamase superfamily HRD54_RS04190 PF00419 Fimbrial protein HRD54_RS04195 PF13953 PapC C-terminal domain HRD54_RS04195 PF00577 Outer membrane usher protein HRD54_RS04195 PF13954 PapC N-terminal domain HRD54_RS04200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS04200 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS04205 PF00419 Fimbrial protein HRD54_RS04210 PF00419 Fimbrial protein HRD54_RS04230 PF00589 Phage integrase family HRD54_RS04235 PF00419 Fimbrial protein HRD54_RS04245 PF00577 Outer membrane usher protein HRD54_RS04245 PF13953 PapC C-terminal domain HRD54_RS04245 PF13954 PapC N-terminal domain HRD54_RS04250 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS04250 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS04255 PF00419 Fimbrial protein HRD54_RS04265 PF00419 Fimbrial protein HRD54_RS04280 PF03806 AbgT putative transporter family HRD54_RS04285 PF09350 Domain of unknown function (DUF1992) HRD54_RS04290 PF02627 Carboxymuconolactone decarboxylase family HRD54_RS04295 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HRD54_RS04300 PF02321 Outer membrane efflux protein HRD54_RS04305 PF00529 HlyD membrane-fusion protein of T1SS HRD54_RS04310 PF00664 ABC transporter transmembrane region HRD54_RS04310 PF00005 ABC transporter HRD54_RS04315 PF00413 Matrixin HRD54_RS04315 PF08548 Peptidase M10 serralysin C terminal HRD54_RS04315 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) HRD54_RS04320 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) HRD54_RS04320 PF00413 Matrixin HRD54_RS04320 PF08548 Peptidase M10 serralysin C terminal HRD54_RS04325 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) HRD54_RS04325 PF08548 Peptidase M10 serralysin C terminal HRD54_RS04325 PF00413 Matrixin HRD54_RS04340 PF01546 Peptidase family M20/M25/M40 HRD54_RS04340 PF07687 Peptidase dimerisation domain HRD54_RS04350 PF13419 Haloacid dehalogenase-like hydrolase HRD54_RS04355 PF03636 Glycosyl hydrolase family 65, N-terminal domain HRD54_RS04355 PF03633 Glycosyl hydrolase family 65, C-terminal domain HRD54_RS04355 PF03632 Glycosyl hydrolase family 65 central catalytic domain HRD54_RS04360 PF00367 phosphotransferase system, EIIB HRD54_RS04360 PF02378 Phosphotransferase system, EIIC HRD54_RS04365 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS04380 PF01381 Helix-turn-helix HRD54_RS04385 PF00419 Fimbrial protein HRD54_RS04395 PF00577 Outer membrane usher protein HRD54_RS04395 PF13954 PapC N-terminal domain HRD54_RS04395 PF13953 PapC C-terminal domain HRD54_RS04400 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS04400 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS04425 PF12833 Helix-turn-helix domain HRD54_RS04430 PF12833 Helix-turn-helix domain HRD54_RS04455 PF03412 Peptidase C39 family HRD54_RS04455 PF00005 ABC transporter HRD54_RS04455 PF00664 ABC transporter transmembrane region HRD54_RS04465 PF16925 Tetracyclin repressor-like, C-terminal domain HRD54_RS04465 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS04470 PF13520 Amino acid permease HRD54_RS04475 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HRD54_RS04475 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HRD54_RS04475 PF01276 Orn/Lys/Arg decarboxylase, major domain HRD54_RS04505 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HRD54_RS04505 PF01464 Transglycosylase SLT domain HRD54_RS04510 PF04362 Bacterial Fe(2+) trafficking HRD54_RS04515 PF14815 NUDIX domain HRD54_RS04515 PF00730 HhH-GPD superfamily base excision DNA repair protein HRD54_RS04515 PF00633 Helix-hairpin-helix motif HRD54_RS04515 PF10576 Iron-sulfur binding domain of endonuclease III HRD54_RS04520 PF02390 Putative methyltransferase HRD54_RS04525 PF04320 Protein with unknown function (DUF469) HRD54_RS04530 PF04960 Glutaminase HRD54_RS04535 PF11101 Protein of unknown function (DUF2884) HRD54_RS04540 PF01497 Periplasmic binding protein HRD54_RS04545 PF06969 HemN C-terminal domain HRD54_RS04545 PF04055 Radical SAM superfamily HRD54_RS04550 PF01725 Ham1 family HRD54_RS04555 PF02325 YGGT family HRD54_RS04560 PF14748 Pyrroline-5-carboxylate reductase dimerisation HRD54_RS04560 PF03807 NADP oxidoreductase coenzyme F420-dependent HRD54_RS04565 PF01168 Alanine racemase, N-terminal domain HRD54_RS04570 PF00437 Type II/IV secretion system protein HRD54_RS04575 PF03652 Holliday junction resolvase HRD54_RS04580 PF02622 Uncharacterized ACR, COG1678 HRD54_RS04585 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HRD54_RS04585 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HRD54_RS04590 PF04452 RNA methyltransferase HRD54_RS04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS04610 PF03466 LysR substrate binding domain HRD54_RS04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS04615 PF03466 LysR substrate binding domain HRD54_RS04620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HRD54_RS04620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HRD54_RS04625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HRD54_RS04625 PF09317 Domain of unknown function (DUF1974) HRD54_RS04625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HRD54_RS04630 PF13580 SIS domain HRD54_RS04635 PF13230 Glutamine amidotransferases class-II HRD54_RS04640 PF03734 L,D-transpeptidase catalytic domain HRD54_RS04645 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HRD54_RS04645 PF11973 NQRA C-terminal domain HRD54_RS04650 PF03116 NQR2, RnfD, RnfE family HRD54_RS04655 PF04205 FMN-binding domain HRD54_RS04660 PF02508 Rnf-Nqr subunit, membrane protein HRD54_RS04665 PF02508 Rnf-Nqr subunit, membrane protein HRD54_RS04670 PF00175 Oxidoreductase NAD-binding domain HRD54_RS04670 PF00970 Oxidoreductase FAD-binding domain HRD54_RS04670 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD54_RS04675 PF02424 ApbE family HRD54_RS04680 PF04400 (Na+)-NQR maturation NqrM HRD54_RS04685 PF05532 CsbD-like HRD54_RS04690 PF03009 Glycerophosphoryl diester phosphodiesterase family HRD54_RS04695 PF00817 impB/mucB/samB family HRD54_RS04695 PF11798 IMS family HHH motif HRD54_RS04695 PF11799 impB/mucB/samB family C-terminal domain HRD54_RS04700 PF00593 TonB dependent receptor HRD54_RS04700 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS04705 PF01546 Peptidase family M20/M25/M40 HRD54_RS04705 PF07687 Peptidase dimerisation domain HRD54_RS04710 PF00156 Phosphoribosyl transferase domain HRD54_RS04720 PF07417 Sigma factor-binding transcriptional regulator Crl HRD54_RS04725 PF00696 Amino acid kinase family HRD54_RS04725 PF01472 PUA domain HRD54_RS04730 PF00171 Aldehyde dehydrogenase family HRD54_RS04735 PF01202 Shikimate kinase HRD54_RS04740 PF00501 AMP-binding enzyme HRD54_RS04740 PF13193 AMP-binding enzyme C-terminal domain HRD54_RS04740 PF01553 Acyltransferase HRD54_RS04745 PF07690 Major Facilitator Superfamily HRD54_RS04750 PF02464 Competence-damaged protein HRD54_RS04755 PF00154 recA bacterial DNA recombination protein HRD54_RS04760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HRD54_RS04760 PF01411 tRNA synthetases class II (A) HRD54_RS04760 PF02272 DHHA1 domain HRD54_RS04765 PF02599 Global regulator protein family HRD54_RS04795 PF04262 Glutamate-cysteine ligase HRD54_RS04800 PF02664 S-Ribosylhomocysteinase (LuxS) HRD54_RS04805 PF03471 Transporter associated domain HRD54_RS04805 PF00571 CBS domain HRD54_RS04805 PF01595 Cyclin M transmembrane N-terminal domain HRD54_RS04810 PF01578 Cytochrome C assembly protein HRD54_RS04815 PF00448 SRP54-type protein, GTPase domain HRD54_RS04815 PF02881 SRP54-type protein, helical bundle domain HRD54_RS04815 PF02978 Signal peptide binding domain HRD54_RS04820 PF00886 Ribosomal protein S16 HRD54_RS04825 PF05239 PRC-barrel domain HRD54_RS04825 PF01782 RimM N-terminal domain HRD54_RS04830 PF01746 tRNA (Guanine-1)-methyltransferase HRD54_RS04835 PF01245 Ribosomal protein L19 HRD54_RS04840 PF00793 DAHP synthetase I family HRD54_RS04845 PF01817 Chorismate mutase type II HRD54_RS04845 PF02153 Prephenate dehydrogenase HRD54_RS04860 PF03605 Anaerobic c4-dicarboxylate membrane transporter HRD54_RS04865 PF01817 Chorismate mutase type II HRD54_RS04865 PF00800 Prephenate dehydratase HRD54_RS04870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HRD54_RS04875 PF13525 Outer membrane lipoprotein HRD54_RS04880 PF00849 RNA pseudouridylate synthase HRD54_RS04880 PF01479 S4 domain HRD54_RS04890 PF17871 AAA lid domain HRD54_RS04890 PF10431 C-terminal, D2-small domain, of ClpB protein HRD54_RS04890 PF07724 AAA domain (Cdc48 subfamily) HRD54_RS04890 PF02861 Clp amino terminal domain, pathogenicity island component HRD54_RS04890 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS04920 PF10043 Predicted periplasmic lipoprotein (DUF2279) HRD54_RS04925 PF13091 PLD-like domain HRD54_RS04930 PF13380 CoA binding domain HRD54_RS04930 PF00583 Acetyltransferase (GNAT) family HRD54_RS04930 PF13607 Succinyl-CoA ligase like flavodoxin domain HRD54_RS04945 PF00588 SpoU rRNA Methylase family HRD54_RS04945 PF08032 RNA 2'-O ribose methyltransferase substrate binding HRD54_RS04950 PF07690 Major Facilitator Superfamily HRD54_RS04955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD54_RS04955 PF00529 HlyD membrane-fusion protein of T1SS HRD54_RS04960 PF07729 FCD domain HRD54_RS04960 PF00392 Bacterial regulatory proteins, gntR family HRD54_RS04965 PF07690 Major Facilitator Superfamily HRD54_RS04970 PF00857 Isochorismatase family HRD54_RS04975 PF01047 MarR family HRD54_RS04980 PF07690 Major Facilitator Superfamily HRD54_RS04985 PF00593 TonB dependent receptor HRD54_RS04985 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS04990 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HRD54_RS04995 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS05000 PF00571 CBS domain HRD54_RS05000 PF00005 ABC transporter HRD54_RS05005 PF00268 Ribonucleotide reductase, small chain HRD54_RS05010 PF00317 Ribonucleotide reductase, all-alpha domain HRD54_RS05010 PF02867 Ribonucleotide reductase, barrel domain HRD54_RS05010 PF08343 Ribonucleotide reductase N-terminal HRD54_RS05015 PF07972 NrdI Flavodoxin like HRD54_RS05030 PF00313 'Cold-shock' DNA-binding domain HRD54_RS05040 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HRD54_RS05045 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HRD54_RS05045 PF04055 Radical SAM superfamily HRD54_RS05055 PF04359 Protein of unknown function (DUF493) HRD54_RS05060 PF07943 Penicillin-binding protein 5, C-terminal domain HRD54_RS05060 PF00768 D-alanyl-D-alanine carboxypeptidase HRD54_RS05065 PF03330 Lytic transglycolase HRD54_RS05065 PF05036 Sporulation related domain HRD54_RS05070 PF01098 Cell cycle protein HRD54_RS05075 PF00905 Penicillin binding protein transpeptidase domain HRD54_RS05075 PF03717 Penicillin-binding Protein dimerisation domain HRD54_RS05080 PF02590 Predicted SPOUT methyltransferase HRD54_RS05095 PF01467 Cytidylyltransferase-like HRD54_RS05100 PF06144 DNA polymerase III, delta subunit HRD54_RS05100 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HRD54_RS05105 PF04390 Lipopolysaccharide-assembly HRD54_RS05110 PF08264 Anticodon-binding domain of tRNA HRD54_RS05110 PF00133 tRNA synthetases class I (I, L, M and V) HRD54_RS05110 PF13603 Leucyl-tRNA synthetase, Domain 2 HRD54_RS05115 PF00005 ABC transporter HRD54_RS05120 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS05125 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS05130 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD54_RS05150 PF00578 AhpC/TSA family HRD54_RS05160 PF00795 Carbon-nitrogen hydrolase HRD54_RS05165 PF03471 Transporter associated domain HRD54_RS05165 PF00571 CBS domain HRD54_RS05170 PF02130 Uncharacterized protein family UPF0054 HRD54_RS05175 PF02562 PhoH-like protein HRD54_RS05180 PF04055 Radical SAM superfamily HRD54_RS05180 PF01938 TRAM domain HRD54_RS05180 PF00919 Uncharacterized protein family UPF0004 HRD54_RS05185 PF01494 FAD binding domain HRD54_RS05190 PF00756 Putative esterase HRD54_RS05195 PF08240 Alcohol dehydrogenase GroES-like domain HRD54_RS05195 PF00107 Zinc-binding dehydrogenase HRD54_RS05200 PF02583 Metal-sensitive transcriptional repressor HRD54_RS05240 PF00480 ROK family HRD54_RS05240 PF01047 MarR family HRD54_RS05245 PF01979 Amidohydrolase family HRD54_RS05250 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HRD54_RS05255 PF02378 Phosphotransferase system, EIIC HRD54_RS05255 PF00367 phosphotransferase system, EIIB HRD54_RS05255 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD54_RS05260 PF00749 tRNA synthetases class I (E and Q), catalytic domain HRD54_RS05260 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HRD54_RS05265 PF03573 outer membrane porin, OprD family HRD54_RS05275 PF01475 Ferric uptake regulator family HRD54_RS05280 PF00258 Flavodoxin HRD54_RS05285 PF01402 Ribbon-helix-helix protein, copG family HRD54_RS05290 PF12697 Alpha/beta hydrolase family HRD54_RS05295 PF03925 SeqA protein C-terminal domain HRD54_RS05295 PF17206 SeqA protein N-terminal domain HRD54_RS05300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRD54_RS05300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRD54_RS05300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRD54_RS05300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRD54_RS05305 PF07308 Protein of unknown function (DUF1456) HRD54_RS05310 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system HRD54_RS05320 PF10725 Protein of unknown function (DUF2517) HRD54_RS05325 PF01784 NIF3 (NGG1p interacting factor 3) HRD54_RS05335 PF05762 VWA domain containing CoxE-like protein HRD54_RS05345 PF07728 AAA domain (dynein-related subfamily) HRD54_RS05355 PF07690 Major Facilitator Superfamily HRD54_RS05365 PF00285 Citrate synthase, C-terminal domain HRD54_RS05370 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HRD54_RS05375 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HRD54_RS05380 PF02910 Fumarate reductase flavoprotein C-term HRD54_RS05380 PF00890 FAD binding domain HRD54_RS05385 PF13085 2Fe-2S iron-sulfur cluster binding domain HRD54_RS05390 PF00676 Dehydrogenase E1 component HRD54_RS05390 PF16078 2-oxoglutarate dehydrogenase N-terminus HRD54_RS05390 PF02779 Transketolase, pyrimidine binding domain HRD54_RS05390 PF16870 2-oxoglutarate dehydrogenase C-terminal HRD54_RS05395 PF02817 e3 binding domain HRD54_RS05395 PF00364 Biotin-requiring enzyme HRD54_RS05395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HRD54_RS05400 PF08442 ATP-grasp domain HRD54_RS05400 PF00549 CoA-ligase HRD54_RS05405 PF00549 CoA-ligase HRD54_RS05405 PF02629 CoA binding domain HRD54_RS05410 PF01654 Cytochrome bd terminal oxidase subunit I HRD54_RS05415 PF02322 Cytochrome bd terminal oxidase subunit II HRD54_RS05420 PF08173 Membrane bound YbgT-like protein HRD54_RS05425 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HRD54_RS05430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS05430 PF03466 LysR substrate binding domain HRD54_RS05435 PF07690 Major Facilitator Superfamily HRD54_RS05445 PF03061 Thioesterase superfamily HRD54_RS05450 PF01618 MotA/TolQ/ExbB proton channel family HRD54_RS05455 PF02472 Biopolymer transport protein ExbD/TolR HRD54_RS05460 PF06519 TolA C-terminal HRD54_RS05465 PF07676 WD40-like Beta Propeller Repeat HRD54_RS05465 PF04052 TolB amino-terminal domain HRD54_RS05470 PF00691 OmpA family HRD54_RS05475 PF13174 Tetratricopeptide repeat HRD54_RS05475 PF16331 TolA binding protein trimerisation HRD54_RS05495 PF04973 Nicotinamide mononucleotide transporter HRD54_RS05500 PF00793 DAHP synthetase I family HRD54_RS05505 PF00300 Histidine phosphatase superfamily (branch 1) HRD54_RS05510 PF00005 ABC transporter HRD54_RS05515 PF08479 POTRA domain, ShlB-type HRD54_RS05515 PF17287 POTRA domain HRD54_RS05515 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HRD54_RS05520 PF05594 Haemagluttinin repeat HRD54_RS05520 PF05860 haemagglutination activity domain HRD54_RS05520 PF13332 Hemagglutinin repeat HRD54_RS05520 PF04829 Pre-toxin domain with VENN motif HRD54_RS05520 PF14436 Bacterial EndoU nuclease HRD54_RS05530 PF03459 TOBE domain HRD54_RS05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS05535 PF10766 Multidrug efflux pump-associated protein AcrZ HRD54_RS05545 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS05550 PF03459 TOBE domain HRD54_RS05550 PF00005 ABC transporter HRD54_RS05560 PF10282 Lactonase, 7-bladed beta-propeller HRD54_RS05565 PF00202 Aminotransferase class-III HRD54_RS05570 PF06968 Biotin and Thiamin Synthesis associated domain HRD54_RS05570 PF04055 Radical SAM superfamily HRD54_RS05575 PF00155 Aminotransferase class I and II HRD54_RS05580 PF08241 Methyltransferase domain HRD54_RS05590 PF04851 Type III restriction enzyme, res subunit HRD54_RS05590 PF02151 UvrB/uvrC motif HRD54_RS05590 PF12344 Ultra-violet resistance protein B HRD54_RS05590 PF17757 UvrB interaction domain HRD54_RS05590 PF00271 Helicase conserved C-terminal domain HRD54_RS05600 PF01933 Uncharacterised protein family UPF0052 HRD54_RS05605 PF04055 Radical SAM superfamily HRD54_RS05605 PF06463 Molybdenum Cofactor Synthesis C HRD54_RS05610 PF01967 MoaC family HRD54_RS05615 PF02597 ThiS family HRD54_RS05620 PF02391 MoaE protein HRD54_RS05625 PF01027 Inhibitor of apoptosis-promoting Bax1 HRD54_RS05640 PF00005 ABC transporter HRD54_RS05645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD54_RS05650 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS05650 PF09209 Tetracyclin repressor-like, C-terminal domain HRD54_RS05655 PF00271 Helicase conserved C-terminal domain HRD54_RS05655 PF00270 DEAD/DEAH box helicase HRD54_RS05660 PF01207 Dihydrouridine synthase (Dus) HRD54_RS05665 PF04226 Transglycosylase associated protein HRD54_RS05670 PF00581 Rhodanese-like domain HRD54_RS05680 PF03606 C4-dicarboxylate anaerobic carrier HRD54_RS05685 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD54_RS05690 PF00206 Lyase HRD54_RS05690 PF10397 Adenylosuccinate lyase C-terminus HRD54_RS05695 PF03972 MmgE/PrpD family HRD54_RS05700 PF03466 LysR substrate binding domain HRD54_RS05700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS05705 PF06733 DEAD_2 HRD54_RS05705 PF13307 Helicase C-terminal domain HRD54_RS05710 PF00210 Ferritin-like domain HRD54_RS05715 PF00892 EamA-like transporter family HRD54_RS05720 PF03641 Possible lysine decarboxylase HRD54_RS05730 PF07969 Amidohydrolase family HRD54_RS05735 PF00899 ThiF family HRD54_RS05740 PF03454 MoeA C-terminal region (domain IV) HRD54_RS05740 PF03453 MoeA N-terminal region (domain I and II) HRD54_RS05740 PF00994 Probable molybdopterin binding domain HRD54_RS05745 PF06779 Uncharacterised MFS-type transporter YbfB HRD54_RS05750 PF01227 GTP cyclohydrolase I HRD54_RS05755 PF04235 Protein of unknown function (DUF418) HRD54_RS05760 PF02698 DUF218 domain HRD54_RS05765 PF03949 Malic enzyme, NAD binding domain HRD54_RS05765 PF00390 Malic enzyme, N-terminal domain HRD54_RS05770 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HRD54_RS05770 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HRD54_RS05775 PF04172 LrgB-like family HRD54_RS05780 PF03788 LrgA family HRD54_RS05785 PF01588 Putative tRNA binding domain HRD54_RS05785 PF09334 tRNA synthetases class I (M) HRD54_RS05790 PF10609 NUBPL iron-transfer P-loop NTPase HRD54_RS05795 PF00485 Phosphoribulokinase / Uridine kinase family HRD54_RS05800 PF00692 dUTPase HRD54_RS05805 PF05170 AsmA family HRD54_RS05810 PF03606 C4-dicarboxylate anaerobic carrier HRD54_RS05815 PF03741 Integral membrane protein TerC family HRD54_RS05815 PF00571 CBS domain HRD54_RS05815 PF03471 Transporter associated domain HRD54_RS05825 PF12323 Helix-turn-helix domain HRD54_RS05825 PF07282 Putative transposase DNA-binding domain HRD54_RS05825 PF01385 Probable transposase HRD54_RS05830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HRD54_RS05830 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HRD54_RS05835 PF04073 Aminoacyl-tRNA editing domain HRD54_RS05840 PF00465 Iron-containing alcohol dehydrogenase HRD54_RS05845 PF01502 Phosphoribosyl-AMP cyclohydrolase HRD54_RS05845 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HRD54_RS05850 PF00977 Histidine biosynthesis protein HRD54_RS05855 PF00977 Histidine biosynthesis protein HRD54_RS05860 PF00117 Glutamine amidotransferase class-I HRD54_RS05865 PF00475 Imidazoleglycerol-phosphate dehydratase HRD54_RS05870 PF00155 Aminotransferase class I and II HRD54_RS05875 PF00815 Histidinol dehydrogenase HRD54_RS05880 PF08029 HisG, C-terminal domain HRD54_RS05880 PF01634 ATP phosphoribosyltransferase HRD54_RS05885 PF01370 NAD dependent epimerase/dehydratase family HRD54_RS05890 PF00043 Glutathione S-transferase, C-terminal domain HRD54_RS05890 PF13417 Glutathione S-transferase, N-terminal domain HRD54_RS05895 PF07943 Penicillin-binding protein 5, C-terminal domain HRD54_RS05895 PF00768 D-alanyl-D-alanine carboxypeptidase HRD54_RS05900 PF01268 Formate--tetrahydrofolate ligase HRD54_RS05905 PF03313 Serine dehydratase alpha chain HRD54_RS05905 PF03315 Serine dehydratase beta chain HRD54_RS05915 PF01569 PAP2 superfamily HRD54_RS05920 PF01894 Uncharacterised protein family UPF0047 HRD54_RS05925 PF00462 Glutaredoxin HRD54_RS05930 PF07214 Protein of unknown function (DUF1418) HRD54_RS05935 PF10722 Putative bacterial sensory transduction regulator HRD54_RS05940 PF05958 tRNA (Uracil-5-)-methyltransferase HRD54_RS05945 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS05950 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS05955 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD54_RS05960 PF00005 ABC transporter HRD54_RS05965 PF11066 Protein of unknown function (DUF2867) HRD54_RS05965 PF13460 NAD(P)H-binding HRD54_RS05970 PF03956 Lysine exporter LysO HRD54_RS05975 PF11398 Protein of unknown function (DUF2813) HRD54_RS05980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD54_RS05985 PF00005 ABC transporter HRD54_RS05985 PF12704 MacB-like periplasmic core domain HRD54_RS05985 PF02687 FtsX-like permease family HRD54_RS05990 PF00313 'Cold-shock' DNA-binding domain HRD54_RS05995 PF02617 ATP-dependent Clp protease adaptor protein ClpS HRD54_RS06000 PF10431 C-terminal, D2-small domain, of ClpB protein HRD54_RS06000 PF07724 AAA domain (Cdc48 subfamily) HRD54_RS06000 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS06000 PF17871 AAA lid domain HRD54_RS06000 PF02861 Clp amino terminal domain, pathogenicity island component HRD54_RS06005 PF01176 Translation initiation factor 1A / IF-1 HRD54_RS06010 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HRD54_RS06015 PF00664 ABC transporter transmembrane region HRD54_RS06015 PF00005 ABC transporter HRD54_RS06020 PF00664 ABC transporter transmembrane region HRD54_RS06020 PF00005 ABC transporter HRD54_RS06025 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS06030 PF01037 Lrp/AsnC ligand binding domain HRD54_RS06035 PF17854 FtsK alpha domain HRD54_RS06035 PF09397 Ftsk gamma domain HRD54_RS06035 PF01580 FtsK/SpoIIIE family HRD54_RS06035 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HRD54_RS06040 PF03548 Outer membrane lipoprotein carrier protein LolA HRD54_RS06045 PF12002 MgsA AAA+ ATPase C terminal HRD54_RS06045 PF16193 AAA C-terminal domain HRD54_RS06045 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS06050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRD54_RS06050 PF02403 Seryl-tRNA synthetase N-terminal domain HRD54_RS06060 PF02615 Malate/L-lactate dehydrogenase HRD54_RS06070 PF04055 Radical SAM superfamily HRD54_RS06075 PF02901 Pyruvate formate lyase-like HRD54_RS06075 PF01228 Glycine radical HRD54_RS06080 PF01226 Formate/nitrite transporter HRD54_RS06085 PF18381 YcaO cyclodehydratase C-terminal domain HRD54_RS06085 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HRD54_RS06090 PF17763 Glutaminase/Asparaginase C-terminal domain HRD54_RS06090 PF00710 Asparaginase, N-terminal HRD54_RS06095 PF05594 Haemagluttinin repeat HRD54_RS06095 PF05860 haemagglutination activity domain HRD54_RS06095 PF13332 Hemagglutinin repeat HRD54_RS06095 PF15526 Novel toxin 21 HRD54_RS06095 PF04829 Pre-toxin domain with VENN motif HRD54_RS06100 PF07690 Major Facilitator Superfamily HRD54_RS06105 PF00266 Aminotransferase class-V HRD54_RS06110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HRD54_RS06115 PF02224 Cytidylate kinase HRD54_RS06120 PF00575 S1 RNA binding domain HRD54_RS06125 PF00216 Bacterial DNA-binding protein HRD54_RS06130 PF00753 Metallo-beta-lactamase superfamily HRD54_RS06130 PF03772 Competence protein HRD54_RS06135 PF00005 ABC transporter HRD54_RS06135 PF00664 ABC transporter transmembrane region HRD54_RS06140 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HRD54_RS06145 PF00313 'Cold-shock' DNA-binding domain HRD54_RS06150 PF03966 Trm112p-like protein HRD54_RS06155 PF02348 Cytidylyltransferase HRD54_RS06160 PF02698 DUF218 domain HRD54_RS06165 PF13847 Methyltransferase domain HRD54_RS06170 PF03882 MukF winged-helix domain HRD54_RS06170 PF17192 MukF middle domain HRD54_RS06170 PF17193 MukF C-terminal domain HRD54_RS06175 PF04288 MukE-like family HRD54_RS06180 PF04310 MukB N-terminal HRD54_RS06180 PF16330 MukB hinge domain HRD54_RS06185 PF00302 Chloramphenicol acetyltransferase HRD54_RS06190 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HRD54_RS06195 PF01471 Putative peptidoglycan binding domain HRD54_RS06195 PF03734 L,D-transpeptidase catalytic domain HRD54_RS06200 PF05951 Bacterial protein of unknown function (DUF882) HRD54_RS06205 PF00753 Metallo-beta-lactamase superfamily HRD54_RS06210 PF05638 Type VI secretion system effector, Hcp HRD54_RS06245 PF10431 C-terminal, D2-small domain, of ClpB protein HRD54_RS06245 PF17871 AAA lid domain HRD54_RS06245 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS06245 PF07724 AAA domain (Cdc48 subfamily) HRD54_RS06295 PF05638 Type VI secretion system effector, Hcp HRD54_RS06300 PF04717 Type VI secretion system, phage-baseplate injector HRD54_RS06400 PF00155 Aminotransferase class I and II HRD54_RS06405 PF00267 Gram-negative porin HRD54_RS06410 PF01336 OB-fold nucleic acid binding domain HRD54_RS06410 PF00152 tRNA synthetases class II (D, K and N) HRD54_RS06420 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HRD54_RS06420 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HRD54_RS06425 PF11940 Domain of unknown function (DUF3458) Ig-like fold HRD54_RS06425 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HRD54_RS06425 PF01433 Peptidase family M1 domain HRD54_RS06435 PF01180 Dihydroorotate dehydrogenase HRD54_RS06440 PF07126 Cell-division protein ZapC HRD54_RS06445 PF03476 MOSC N-terminal beta barrel domain HRD54_RS06445 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD54_RS06445 PF03473 MOSC domain HRD54_RS06450 PF10672 S-adenosylmethionine-dependent methyltransferase HRD54_RS06450 PF02926 THUMP domain HRD54_RS06450 PF01170 Putative RNA methylase family UPF0020 HRD54_RS06455 PF12848 ABC transporter HRD54_RS06455 PF16326 ABC transporter C-terminal domain HRD54_RS06455 PF00005 ABC transporter HRD54_RS06460 PF04403 Paraquat-inducible protein A HRD54_RS06465 PF02470 MlaD protein HRD54_RS06470 PF03886 ABC-type transport auxiliary lipoprotein component HRD54_RS06480 PF04957 Ribosome modulation factor HRD54_RS06485 PF07977 FabA-like domain HRD54_RS06490 PF05362 Lon protease (S16) C-terminal proteolytic domain HRD54_RS06490 PF13654 AAA domain HRD54_RS06495 PF06303 MatP N-terminal domain HRD54_RS06495 PF17414 MatP C-terminal ribbon-helix-helix domain HRD54_RS06500 PF00691 OmpA family HRD54_RS06500 PF01389 OmpA-like transmembrane domain HRD54_RS06505 PF03846 Cell division inhibitor SulA HRD54_RS06510 PF04994 TfoX C-terminal domain HRD54_RS06510 PF04993 TfoX N-terminal domain HRD54_RS06515 PF12805 FUSC-like inner membrane protein yccS HRD54_RS06520 PF00580 UvrD/REP helicase N-terminal domain HRD54_RS06520 PF12462 DNA helicase IV / RNA helicase N terminal HRD54_RS06520 PF13361 UvrD-like helicase C-terminal domain HRD54_RS06525 PF02142 MGS-like domain HRD54_RS06530 PF13380 CoA binding domain HRD54_RS06535 PF08755 Hemimethylated DNA-binding protein YccV like HRD54_RS06540 PF00708 Acylphosphatase HRD54_RS06545 PF04358 DsrC like protein HRD54_RS06555 PF00583 Acetyltransferase (GNAT) family HRD54_RS06565 PF09313 Domain of unknown function (DUF1971) HRD54_RS06570 PF00226 DnaJ domain HRD54_RS06570 PF01556 DnaJ C terminal domain HRD54_RS06580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS06580 PF03466 LysR substrate binding domain HRD54_RS06585 PF00248 Aldo/keto reductase family HRD54_RS06590 PF03577 Peptidase family C69 HRD54_RS06595 PF06445 GyrI-like small molecule binding domain HRD54_RS06595 PF12833 Helix-turn-helix domain HRD54_RS06610 PF00313 'Cold-shock' DNA-binding domain HRD54_RS06615 PF03279 Bacterial lipid A biosynthesis acyltransferase HRD54_RS06640 PF13847 Methyltransferase domain HRD54_RS06650 PF01810 LysE type translocator HRD54_RS06660 PF11893 Domain of unknown function (DUF3413) HRD54_RS06660 PF00884 Sulfatase HRD54_RS06665 PF07208 Protein of unknown function (DUF1414) HRD54_RS06670 PF04245 37-kD nucleoid-associated bacterial protein HRD54_RS06675 PF01386 Ribosomal L25p family HRD54_RS06680 PF04851 Type III restriction enzyme, res subunit HRD54_RS06680 PF00271 Helicase conserved C-terminal domain HRD54_RS06685 PF01479 S4 domain HRD54_RS06685 PF00849 RNA pseudouridylate synthase HRD54_RS06690 PF07690 Major Facilitator Superfamily HRD54_RS06695 PF13989 YejG-like protein HRD54_RS06700 PF00877 NlpC/P60 family HRD54_RS06705 PF01569 PAP2 superfamily HRD54_RS06720 PF01132 Elongation factor P (EF-P) OB domain HRD54_RS06720 PF08207 Elongation factor P (EF-P) KOW-like domain HRD54_RS06720 PF09285 Elongation factor P, C-terminal HRD54_RS06725 PF03222 Tryptophan/tyrosine permease family HRD54_RS06730 PF00293 NUDIX domain HRD54_RS06735 PF01261 Xylose isomerase-like TIM barrel HRD54_RS06740 PF03601 Conserved hypothetical protein 698 HRD54_RS06745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS06745 PF03466 LysR substrate binding domain HRD54_RS06750 PF00324 Amino acid permease HRD54_RS06755 PF00593 TonB dependent receptor HRD54_RS06755 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS06760 PF13520 Amino acid permease HRD54_RS06765 PF00082 Subtilase family HRD54_RS06765 PF12951 Passenger-associated-transport-repeat HRD54_RS06765 PF03797 Autotransporter beta-domain HRD54_RS06770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD54_RS06770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD54_RS06770 PF00205 Thiamine pyrophosphate enzyme, central domain HRD54_RS06775 PF03466 LysR substrate binding domain HRD54_RS06775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS06780 PF01565 FAD binding domain HRD54_RS06780 PF09330 D-lactate dehydrogenase, membrane binding HRD54_RS06785 PF00929 Exonuclease HRD54_RS06785 PF08411 Exonuclease C-terminal HRD54_RS06790 PF01306 LacY proton/sugar symporter HRD54_RS06795 PF04363 Protein of unknown function (DUF496) HRD54_RS06800 PF10150 Ribonuclease E/G family HRD54_RS06800 PF00575 S1 RNA binding domain HRD54_RS06800 PF12111 Polyribonucleotide phosphorylase C terminal HRD54_RS06805 PF01479 S4 domain HRD54_RS06805 PF00849 RNA pseudouridylate synthase HRD54_RS06815 PF02545 Maf-like protein HRD54_RS06820 PF02620 Large ribosomal RNA subunit accumulation protein YceD HRD54_RS06825 PF01783 Ribosomal L32p protein family HRD54_RS06830 PF02504 Fatty acid synthesis protein HRD54_RS06835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HRD54_RS06835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HRD54_RS06840 PF00698 Acyl transferase domain HRD54_RS06850 PF00550 Phosphopantetheine attachment site HRD54_RS06855 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD54_RS06855 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD54_RS06860 PF01063 Amino-transferase class IV HRD54_RS06865 PF02618 YceG-like family HRD54_RS06870 PF02223 Thymidylate kinase HRD54_RS06875 PF09115 DNA polymerase III, delta subunit, C terminal HRD54_RS06880 PF01026 TatD related DNase HRD54_RS06885 PF01230 HIT domain HRD54_RS06890 PF07233 Protein of unknown function (DUF1425) HRD54_RS06895 PF13036 Peptidoglycan-synthase activator LpoB HRD54_RS06905 PF00933 Glycosyl hydrolase family 3 N terminal domain HRD54_RS06910 PF05728 Uncharacterised protein family (UPF0227) HRD54_RS06915 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS06920 PF05433 Glycine zipper 2TM domain HRD54_RS06925 PF03461 TRCF domain HRD54_RS06925 PF02559 CarD-like/TRCF domain HRD54_RS06925 PF17757 UvrB interaction domain HRD54_RS06925 PF00271 Helicase conserved C-terminal domain HRD54_RS06925 PF00270 DEAD/DEAH box helicase HRD54_RS06930 PF02687 FtsX-like permease family HRD54_RS06930 PF12704 MacB-like periplasmic core domain HRD54_RS06935 PF00005 ABC transporter HRD54_RS06940 PF12704 MacB-like periplasmic core domain HRD54_RS06940 PF02687 FtsX-like permease family HRD54_RS06945 PF02146 Sir2 family HRD54_RS06950 PF07687 Peptidase dimerisation domain HRD54_RS06950 PF01546 Peptidase family M20/M25/M40 HRD54_RS06955 PF08007 Cupin superfamily protein HRD54_RS06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS06960 PF08918 PhoQ Sensor HRD54_RS06965 PF00072 Response regulator receiver domain HRD54_RS06965 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS06970 PF08328 Adenylosuccinate lyase C-terminal HRD54_RS06970 PF00206 Lyase HRD54_RS06975 PF04356 Protein of unknown function (DUF489) HRD54_RS06985 PF00293 NUDIX domain HRD54_RS06990 PF00849 RNA pseudouridylate synthase HRD54_RS06995 PF00180 Isocitrate/isopropylmalate dehydrogenase HRD54_RS07000 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain HRD54_RS07000 PF00589 Phage integrase family HRD54_RS07015 PF01381 Helix-turn-helix HRD54_RS07015 PF00717 Peptidase S24-like HRD54_RS07050 PF06147 Protein of unknown function (DUF968) HRD54_RS07065 PF06530 Phage antitermination protein Q HRD54_RS07070 PF00313 'Cold-shock' DNA-binding domain HRD54_RS07075 PF07274 Protein of unknown function (DUF1440) HRD54_RS07080 PF02627 Carboxymuconolactone decarboxylase family HRD54_RS07085 PF12833 Helix-turn-helix domain HRD54_RS07085 PF02311 AraC-like ligand binding domain HRD54_RS07105 PF00959 Phage lysozyme HRD54_RS07135 PF03354 Phage Terminase HRD54_RS07235 PF05662 Coiled stalk of trimeric autotransporter adhesin HRD54_RS07235 PF05658 Head domain of trimeric autotransporter adhesin HRD54_RS07235 PF03895 YadA-like membrane anchor domain HRD54_RS07240 PF00180 Isocitrate/isopropylmalate dehydrogenase HRD54_RS07260 PF00313 'Cold-shock' DNA-binding domain HRD54_RS07265 PF00011 Hsp20/alpha crystallin family HRD54_RS07275 PF01638 HxlR-like helix-turn-helix HRD54_RS07280 PF05368 NmrA-like family HRD54_RS07290 PF00485 Phosphoribulokinase / Uridine kinase family HRD54_RS07300 PF02195 ParB-like nuclease domain HRD54_RS07305 PF01507 Phosphoadenosine phosphosulfate reductase family HRD54_RS07305 PF11922 Domain of unknown function (DUF3440) HRD54_RS07310 PF08242 Methyltransferase domain HRD54_RS07325 PF08349 Protein of unknown function (DUF1722) HRD54_RS07335 PF04325 Protein of unknown function (DUF465) HRD54_RS07365 PF00557 Metallopeptidase family M24 HRD54_RS07370 PF06530 Phage antitermination protein Q HRD54_RS07375 PF00561 alpha/beta hydrolase fold HRD54_RS07380 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system HRD54_RS07385 PF02811 PHP domain HRD54_RS07400 PF00582 Universal stress protein family HRD54_RS07405 PF00210 Ferritin-like domain HRD54_RS07410 PF04234 CopC domain HRD54_RS07415 PF05425 Copper resistance protein D HRD54_RS07420 PF10709 Protein of unknown function (DUF2511) HRD54_RS07430 PF02470 MlaD protein HRD54_RS07435 PF04403 Paraquat-inducible protein A HRD54_RS07440 PF13185 GAF domain HRD54_RS07445 PF04352 ProQ/FINO family HRD54_RS07445 PF17516 ProQ C-terminal domain HRD54_RS07450 PF11818 C-terminal domain of tail specific protease (DUF3340) HRD54_RS07450 PF03572 Peptidase family S41 HRD54_RS07450 PF00595 PDZ domain HRD54_RS07450 PF17804 Tail specific protease N-terminal domain HRD54_RS07460 PF01435 Peptidase family M48 HRD54_RS07475 PF04307 LexA-binding, inner membrane-associated putative hydrolase HRD54_RS07480 PF13419 Haloacid dehalogenase-like hydrolase HRD54_RS07485 PF14002 YniB-like protein HRD54_RS07490 PF03881 Fructosamine kinase HRD54_RS07495 PF00950 ABC 3 transport family HRD54_RS07500 PF00950 ABC 3 transport family HRD54_RS07505 PF00005 ABC transporter HRD54_RS07510 PF01297 Zinc-uptake complex component A periplasmic HRD54_RS07515 PF01464 Transglycosylase SLT domain HRD54_RS07520 PF01914 MarC family integral membrane protein HRD54_RS07530 PF01588 Putative tRNA binding domain HRD54_RS07540 PF09160 FimH, mannose binding HRD54_RS07545 PF02824 TGS domain HRD54_RS07545 PF03129 Anticodon binding domain HRD54_RS07545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HRD54_RS07545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRD54_RS07550 PF05198 Translation initiation factor IF-3, N-terminal domain HRD54_RS07550 PF00707 Translation initiation factor IF-3, C-terminal domain HRD54_RS07555 PF01632 Ribosomal protein L35 HRD54_RS07560 PF00453 Ribosomal protein L20 HRD54_RS07570 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HRD54_RS07570 PF01409 tRNA synthetases class II core domain (F) HRD54_RS07575 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HRD54_RS07575 PF01588 Putative tRNA binding domain HRD54_RS07575 PF03483 B3/4 domain HRD54_RS07575 PF03147 Ferredoxin-fold anticodon binding domain HRD54_RS07575 PF03484 tRNA synthetase B5 domain HRD54_RS07580 PF00216 Bacterial DNA-binding protein HRD54_RS07585 PF01032 FecCD transport family HRD54_RS07590 PF00005 ABC transporter HRD54_RS07595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRD54_RS07600 PF00535 Glycosyl transferase family 2 HRD54_RS07605 PF01370 NAD dependent epimerase/dehydratase family HRD54_RS07605 PF02911 Formyl transferase, C-terminal domain HRD54_RS07605 PF00551 Formyl transferase HRD54_RS07610 PF01522 Polysaccharide deacetylase HRD54_RS07615 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HRD54_RS07620 PF00892 EamA-like transporter family HRD54_RS07625 PF00892 EamA-like transporter family HRD54_RS07630 PF00877 NlpC/P60 family HRD54_RS07635 PF10437 Bacterial lipoate protein ligase C-terminus HRD54_RS07635 PF03099 Biotin/lipoate A/B protein ligase family HRD54_RS07640 PF12833 Helix-turn-helix domain HRD54_RS07645 PF01266 FAD dependent oxidoreductase HRD54_RS07650 PF00392 Bacterial regulatory proteins, gntR family HRD54_RS07650 PF07729 FCD domain HRD54_RS07665 PF09335 SNARE associated Golgi protein HRD54_RS07670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD54_RS07670 PF00205 Thiamine pyrophosphate enzyme, central domain HRD54_RS07670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD54_RS07675 PF03306 Alpha-acetolactate decarboxylase HRD54_RS07690 PF00577 Outer membrane usher protein HRD54_RS07690 PF13954 PapC N-terminal domain HRD54_RS07695 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS07695 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS07730 PF06071 Protein of unknown function (DUF933) HRD54_RS07730 PF01926 50S ribosome-binding GTPase HRD54_RS07735 PF01195 Peptidyl-tRNA hydrolase HRD54_RS07740 PF10762 Protein of unknown function (DUF2583) HRD54_RS07745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HRD54_RS07745 PF14572 Phosphoribosyl synthetase-associated domain HRD54_RS07750 PF00288 GHMP kinases N terminal domain HRD54_RS07750 PF08544 GHMP kinases C terminal HRD54_RS07755 PF03550 Outer membrane lipoprotein LolB HRD54_RS07760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HRD54_RS07760 PF01488 Shikimate / quinate 5-dehydrogenase HRD54_RS07760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HRD54_RS07765 PF00472 RF-1 domain HRD54_RS07765 PF03462 PCRF domain HRD54_RS07770 PF17827 PrmC N-terminal domain HRD54_RS07770 PF13847 Methyltransferase domain HRD54_RS07775 PF13369 Transglutaminase-like superfamily HRD54_RS07780 PF00793 DAHP synthetase I family HRD54_RS07785 PF16199 Radical_SAM C-terminal domain HRD54_RS07785 PF04055 Radical SAM superfamily HRD54_RS07795 PF01740 STAS domain HRD54_RS07795 PF00916 Sulfate permease family HRD54_RS07805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD54_RS07820 PF02613 Nitrate reductase delta subunit HRD54_RS07830 PF07690 Major Facilitator Superfamily HRD54_RS07835 PF13302 Acetyltransferase (GNAT) domain HRD54_RS07840 PF03023 Lipid II flippase MurJ HRD54_RS07850 PF00750 tRNA synthetases class I (R) HRD54_RS07850 PF03485 Arginyl tRNA synthetase N terminal domain HRD54_RS07850 PF05746 DALR anticodon binding domain HRD54_RS07855 PF06185 YecM protein HRD54_RS07860 PF03932 CutC family HRD54_RS07870 PF12848 ABC transporter HRD54_RS07870 PF00005 ABC transporter HRD54_RS07870 PF16326 ABC transporter C-terminal domain HRD54_RS07875 PF08003 Protein of unknown function (DUF1698) HRD54_RS07880 PF13649 Methyltransferase domain HRD54_RS07885 PF01124 MAPEG family HRD54_RS07890 PF02938 GAD domain HRD54_RS07890 PF00152 tRNA synthetases class II (D, K and N) HRD54_RS07890 PF01336 OB-fold nucleic acid binding domain HRD54_RS07895 PF00293 NUDIX domain HRD54_RS07900 PF01709 Transcriptional regulator HRD54_RS07905 PF02075 Crossover junction endodeoxyribonuclease RuvC HRD54_RS07910 PF07499 RuvA, C-terminal domain HRD54_RS07910 PF01330 RuvA N terminal domain HRD54_RS07915 PF17864 RuvB AAA lid domain HRD54_RS07915 PF05496 Holliday junction DNA helicase RuvB P-loop domain HRD54_RS07915 PF05491 RuvB C-terminal winged helix domain HRD54_RS07920 PF05638 Type VI secretion system effector, Hcp HRD54_RS07925 PF04717 Type VI secretion system, phage-baseplate injector HRD54_RS07940 PF05593 RHS Repeat HRD54_RS07940 PF03527 RHS protein HRD54_RS07980 PF05593 RHS Repeat HRD54_RS07980 PF03527 RHS protein HRD54_RS08005 PF00950 ABC 3 transport family HRD54_RS08010 PF00005 ABC transporter HRD54_RS08015 PF01297 Zinc-uptake complex component A periplasmic HRD54_RS08020 PF01551 Peptidase family M23 HRD54_RS08020 PF01476 LysM domain HRD54_RS08020 PF08525 Opacity-associated protein A N-terminal motif HRD54_RS08025 PF03279 Bacterial lipid A biosynthesis acyltransferase HRD54_RS08030 PF00224 Pyruvate kinase, barrel domain HRD54_RS08030 PF02887 Pyruvate kinase, alpha/beta domain HRD54_RS08035 PF01418 Helix-turn-helix domain, rpiR family HRD54_RS08035 PF01380 SIS domain HRD54_RS08040 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HRD54_RS08040 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HRD54_RS08045 PF00893 Small Multidrug Resistance protein HRD54_RS08050 PF00893 Small Multidrug Resistance protein HRD54_RS08055 PF13460 NAD(P)H-binding HRD54_RS08055 PF11066 Protein of unknown function (DUF2867) HRD54_RS08060 PF01042 Endoribonuclease L-PSP HRD54_RS08065 PF13307 Helicase C-terminal domain HRD54_RS08065 PF04851 Type III restriction enzyme, res subunit HRD54_RS08070 PF00814 Glycoprotease family HRD54_RS08075 PF03843 Outer membrane lipoprotein Slp family HRD54_RS08080 PF00501 AMP-binding enzyme HRD54_RS08080 PF13193 AMP-binding enzyme C-terminal domain HRD54_RS08085 PF01612 3'-5' exonuclease HRD54_RS08085 PF00570 HRDC domain HRD54_RS08090 PF03776 Septum formation topological specificity factor MinE HRD54_RS08095 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HRD54_RS08100 PF05209 Septum formation inhibitor MinC, N-terminal domain HRD54_RS08100 PF03775 Septum formation inhibitor MinC, C-terminal domain HRD54_RS08105 PF05166 YcgL domain HRD54_RS08110 PF13406 Transglycosylase SLT domain HRD54_RS08115 PF01557 Fumarylacetoacetate (FAA) hydrolase family HRD54_RS08120 PF03692 Putative zinc- or iron-chelating domain HRD54_RS08125 PF03649 Uncharacterised protein family (UPF0014) HRD54_RS08130 PF00005 ABC transporter HRD54_RS08140 PF06445 GyrI-like small molecule binding domain HRD54_RS08140 PF12833 Helix-turn-helix domain HRD54_RS08145 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS08150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS08150 PF02203 Tar ligand binding domain homologue HRD54_RS08150 PF00672 HAMP domain HRD54_RS08155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD54_RS08155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD54_RS08160 PF11739 Dicarboxylate transport HRD54_RS08165 PF13617 YnbE-like lipoprotein HRD54_RS08170 PF07027 Protein of unknown function (DUF1318) HRD54_RS08180 PF13954 PapC N-terminal domain HRD54_RS08180 PF13953 PapC C-terminal domain HRD54_RS08180 PF00577 Outer membrane usher protein HRD54_RS08195 PF02525 Flavodoxin-like fold HRD54_RS08205 PF02525 Flavodoxin-like fold HRD54_RS08210 PF04408 Helicase associated domain (HA2) HRD54_RS08210 PF00270 DEAD/DEAH box helicase HRD54_RS08210 PF11898 Domain of unknown function (DUF3418) HRD54_RS08210 PF00271 Helicase conserved C-terminal domain HRD54_RS08210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HRD54_RS08225 PF13953 PapC C-terminal domain HRD54_RS08225 PF13954 PapC N-terminal domain HRD54_RS08225 PF00577 Outer membrane usher protein HRD54_RS08230 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS08230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS08240 PF13520 Amino acid permease HRD54_RS08245 PF07338 Protein of unknown function (DUF1471) HRD54_RS08250 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HRD54_RS08250 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HRD54_RS08250 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HRD54_RS08255 PF02233 NAD(P) transhydrogenase beta subunit HRD54_RS08260 PF00582 Universal stress protein family HRD54_RS08265 PF00027 Cyclic nucleotide-binding domain HRD54_RS08265 PF00325 Bacterial regulatory proteins, crp family HRD54_RS08270 PF01568 Molydopterin dinucleotide binding domain HRD54_RS08270 PF00384 Molybdopterin oxidoreductase HRD54_RS08270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS08275 PF12800 4Fe-4S binding domain HRD54_RS08275 PF13247 4Fe-4S dicluster domain HRD54_RS08290 PF00550 Phosphopantetheine attachment site HRD54_RS08290 PF14765 Polyketide synthase dehydratase HRD54_RS08290 PF00698 Acyl transferase domain HRD54_RS08290 PF08659 KR domain HRD54_RS08290 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD54_RS08290 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD54_RS08290 PF08240 Alcohol dehydrogenase GroES-like domain HRD54_RS08290 PF16197 Ketoacyl-synthetase C-terminal extension HRD54_RS08295 PF00282 Pyridoxal-dependent decarboxylase conserved domain HRD54_RS08300 PF03551 Transcriptional regulator PadR-like family HRD54_RS08315 PF10417 C-terminal domain of 1-Cys peroxiredoxin HRD54_RS08315 PF00578 AhpC/TSA family HRD54_RS08320 PF13192 Thioredoxin domain HRD54_RS08320 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS08325 PF00589 Phage integrase family HRD54_RS08325 PF02899 Phage integrase, N-terminal SAM-like domain HRD54_RS08395 PF01048 Phosphorylase superfamily HRD54_RS08395 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus HRD54_RS08400 PF00589 Phage integrase family HRD54_RS08400 PF02899 Phage integrase, N-terminal SAM-like domain HRD54_RS08405 PF01112 Asparaginase HRD54_RS08410 PF13533 Biotin-lipoyl like HRD54_RS08415 PF00005 ABC transporter HRD54_RS08425 PF00072 Response regulator receiver domain HRD54_RS08425 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS08430 PF13492 GAF domain HRD54_RS08430 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS08430 PF02702 Osmosensitive K+ channel His kinase sensor domain HRD54_RS08430 PF13493 Domain of unknown function (DUF4118) HRD54_RS08430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS08435 PF02669 K+-transporting ATPase, c chain HRD54_RS08445 PF03814 Potassium-transporting ATPase A subunit HRD54_RS08450 PF12796 Ankyrin repeats (3 copies) HRD54_RS08455 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HRD54_RS08460 PF02613 Nitrate reductase delta subunit HRD54_RS08465 PF04976 DMSO reductase anchor subunit (DmsC) HRD54_RS08470 PF12800 4Fe-4S binding domain HRD54_RS08470 PF13247 4Fe-4S dicluster domain HRD54_RS08475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS08475 PF01568 Molydopterin dinucleotide binding domain HRD54_RS08475 PF00384 Molybdopterin oxidoreductase HRD54_RS08480 PF00455 DeoR C terminal sensor domain HRD54_RS08480 PF08220 DeoR-like helix-turn-helix domain HRD54_RS08485 PF03401 Tripartite tricarboxylate transporter family receptor HRD54_RS08495 PF01970 Tripartite tricarboxylate transporter TctA family HRD54_RS08500 PF02733 Dak1 domain HRD54_RS08505 PF02734 DAK2 domain HRD54_RS08510 PF00701 Dihydrodipicolinate synthetase family HRD54_RS08515 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS08520 PF01042 Endoribonuclease L-PSP HRD54_RS08530 PF01810 LysE type translocator HRD54_RS08540 PF00730 HhH-GPD superfamily base excision DNA repair protein HRD54_RS08545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HRD54_RS08545 PF02805 Metal binding domain of Ada HRD54_RS08545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HRD54_RS08545 PF12833 Helix-turn-helix domain HRD54_RS08560 PF01820 D-ala D-ala ligase N-terminus HRD54_RS08560 PF07478 D-ala D-ala ligase C-terminus HRD54_RS08565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HRD54_RS08580 PF03180 NLPA lipoprotein HRD54_RS08585 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD54_RS08600 PF07690 Major Facilitator Superfamily HRD54_RS08605 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HRD54_RS08610 PF03466 LysR substrate binding domain HRD54_RS08610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS08615 PF07690 Major Facilitator Superfamily HRD54_RS08620 PF17934 Tetracyclin repressor-like, C-terminal domain HRD54_RS08620 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS08630 PF12848 ABC transporter HRD54_RS08630 PF00005 ABC transporter HRD54_RS08635 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HRD54_RS08640 PF01979 Amidohydrolase family HRD54_RS08645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS08645 PF03466 LysR substrate binding domain HRD54_RS08650 PF07690 Major Facilitator Superfamily HRD54_RS08660 PF07690 Major Facilitator Superfamily HRD54_RS08675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD54_RS08675 PF00529 HlyD membrane-fusion protein of T1SS HRD54_RS08680 PF04632 Fusaric acid resistance protein family HRD54_RS08685 PF02321 Outer membrane efflux protein HRD54_RS08695 PF00012 Hsp70 protein HRD54_RS08700 PF01212 Beta-eliminating lyase HRD54_RS08710 PF01810 LysE type translocator HRD54_RS08715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD54_RS08715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD54_RS08725 PF03553 Na+/H+ antiporter family HRD54_RS08730 PF00155 Aminotransferase class I and II HRD54_RS08735 PF12833 Helix-turn-helix domain HRD54_RS08740 PF09905 DNA-binding protein VF530 HRD54_RS08800 PF05433 Glycine zipper 2TM domain HRD54_RS08805 PF00106 short chain dehydrogenase HRD54_RS08810 PF06932 Protein of unknown function (DUF1283) HRD54_RS08825 PF00480 ROK family HRD54_RS08830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS08830 PF03466 LysR substrate binding domain HRD54_RS08835 PF07690 Major Facilitator Superfamily HRD54_RS08840 PF05472 DNA replication terminus site-binding protein (Ter protein) HRD54_RS08845 PF10415 Fumarase C C-terminus HRD54_RS08845 PF00206 Lyase HRD54_RS08850 PF06097 Bacterial protein of unknown function (DUF945) HRD54_RS08860 PF00962 Adenosine/AMP deaminase HRD54_RS08865 PF13593 SBF-like CPA transporter family (DUF4137) HRD54_RS08870 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRD54_RS08870 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD54_RS08875 PF10754 Protein of unknown function (DUF2569) HRD54_RS08880 PF02508 Rnf-Nqr subunit, membrane protein HRD54_RS08885 PF04060 Putative Fe-S cluster HRD54_RS08890 PF10531 SLBB domain HRD54_RS08890 PF13237 4Fe-4S dicluster domain HRD54_RS08890 PF13375 RnfC Barrel sandwich hybrid domain HRD54_RS08890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HRD54_RS08895 PF03116 NQR2, RnfD, RnfE family HRD54_RS08900 PF04205 FMN-binding domain HRD54_RS08905 PF02508 Rnf-Nqr subunit, membrane protein HRD54_RS08910 PF10576 Iron-sulfur binding domain of endonuclease III HRD54_RS08910 PF00633 Helix-hairpin-helix motif HRD54_RS08910 PF00730 HhH-GPD superfamily base excision DNA repair protein HRD54_RS08915 PF00773 RNB domain HRD54_RS08915 PF00575 S1 RNA binding domain HRD54_RS08915 PF08206 Ribonuclease B OB domain HRD54_RS08920 PF01253 Translation initiation factor SUI1 HRD54_RS08925 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HRD54_RS08930 PF18073 Rubredoxin metal binding domain HRD54_RS08935 PF06305 Lipopolysaccharide assembly protein A domain HRD54_RS08940 PF01569 PAP2 superfamily HRD54_RS08945 PF00925 GTP cyclohydrolase II HRD54_RS08960 PF00330 Aconitase family (aconitate hydratase) HRD54_RS08960 PF00694 Aconitase C-terminal domain HRD54_RS08970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS08970 PF03466 LysR substrate binding domain HRD54_RS08990 PF00080 Copper/zinc superoxide dismutase (SODC) HRD54_RS08995 PF08272 Topoisomerase I zinc-ribbon-like HRD54_RS08995 PF01131 DNA topoisomerase HRD54_RS08995 PF01396 Topoisomerase DNA binding C4 zinc finger HRD54_RS08995 PF01751 Toprim domain HRD54_RS09000 PF10692 Protein of unknown function (DUF2498) HRD54_RS09005 PF08496 Peptidase family S49 N-terminal HRD54_RS09005 PF01343 Peptidase family S49 HRD54_RS09010 PF00106 short chain dehydrogenase HRD54_RS09015 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HRD54_RS09025 PF01479 S4 domain HRD54_RS09025 PF00849 RNA pseudouridylate synthase HRD54_RS09030 PF01300 Telomere recombination HRD54_RS09035 PF02811 PHP domain HRD54_RS09040 PF04715 Anthranilate synthase component I, N terminal region HRD54_RS09040 PF00425 chorismate binding enzyme HRD54_RS09045 PF00117 Glutamine amidotransferase class-I HRD54_RS09050 PF00591 Glycosyl transferase family, a/b domain HRD54_RS09050 PF02885 Glycosyl transferase family, helical bundle domain HRD54_RS09055 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HRD54_RS09055 PF00218 Indole-3-glycerol phosphate synthase HRD54_RS09060 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS09065 PF00290 Tryptophan synthase alpha chain HRD54_RS09075 PF03922 OmpW family HRD54_RS09085 PF01740 STAS domain HRD54_RS09085 PF00916 Sulfate permease family HRD54_RS09090 PF04279 Intracellular septation protein A HRD54_RS09095 PF03061 Thioesterase superfamily HRD54_RS09100 PF03544 Gram-negative bacterial TonB protein C-terminal HRD54_RS09110 PF13396 Phospholipase_D-nuclease N-terminal HRD54_RS09110 PF13091 PLD-like domain HRD54_RS09115 PF04269 Protein of unknown function, DUF440 HRD54_RS09120 PF13505 Outer membrane protein beta-barrel domain HRD54_RS09125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HRD54_RS09135 PF01810 LysE type translocator HRD54_RS09140 PF01171 PP-loop family HRD54_RS09145 PF01544 CorA-like Mg2+ transporter protein HRD54_RS09160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS09165 PF08534 Redoxin HRD54_RS09170 PF18024 Helix-turn-helix domain HRD54_RS09170 PF00158 Sigma-54 interaction domain HRD54_RS09180 PF05128 Domain of unknown function (DUF697) HRD54_RS09185 PF04317 YcjX-like family, DUF463 HRD54_RS09195 PF04024 PspC domain HRD54_RS09200 PF06667 Phage shock protein B HRD54_RS09205 PF04012 PspA/IM30 family HRD54_RS09210 PF02954 Bacterial regulatory protein, Fis family HRD54_RS09210 PF00158 Sigma-54 interaction domain HRD54_RS09215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS09220 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS09225 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD54_RS09225 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS09230 PF00005 ABC transporter HRD54_RS09230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD54_RS09235 PF00005 ABC transporter HRD54_RS09245 PF02798 Glutathione S-transferase, N-terminal domain HRD54_RS09245 PF00043 Glutathione S-transferase, C-terminal domain HRD54_RS09250 PF08543 Phosphomethylpyrimidine kinase HRD54_RS09255 PF01479 S4 domain HRD54_RS09255 PF00579 tRNA synthetases class I (W and Y) HRD54_RS09260 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HRD54_RS09260 PF01243 Pyridoxamine 5'-phosphate oxidase HRD54_RS09265 PF03702 Anhydro-N-acetylmuramic acid kinase HRD54_RS09270 PF05433 Glycine zipper 2TM domain HRD54_RS09275 PF01047 MarR family HRD54_RS09280 PF06945 Protein of unknown function (DUF1289) HRD54_RS09285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HRD54_RS09290 PF00929 Exonuclease HRD54_RS09295 PF07282 Putative transposase DNA-binding domain HRD54_RS09295 PF01385 Probable transposase HRD54_RS09295 PF12323 Helix-turn-helix domain HRD54_RS09300 PF01797 Transposase IS200 like HRD54_RS09305 PF00462 Glutaredoxin HRD54_RS09310 PF01872 RibD C-terminal domain HRD54_RS09325 PF01925 Sulfite exporter TauE/SafE HRD54_RS09330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HRD54_RS09330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HRD54_RS09340 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS09345 PF03466 LysR substrate binding domain HRD54_RS09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS09350 PF07690 Major Facilitator Superfamily HRD54_RS09360 PF00677 Lumazine binding domain HRD54_RS09365 PF01554 MatE HRD54_RS09380 PF02887 Pyruvate kinase, alpha/beta domain HRD54_RS09380 PF00224 Pyruvate kinase, barrel domain HRD54_RS09385 PF13520 Amino acid permease HRD54_RS09390 PF00282 Pyridoxal-dependent decarboxylase conserved domain HRD54_RS09400 PF04728 Lipoprotein leucine-zipper HRD54_RS09405 PF03734 L,D-transpeptidase catalytic domain HRD54_RS09405 PF01476 LysM domain HRD54_RS09405 PF17969 L,D-transpeptidase C-terminal domain HRD54_RS09410 PF02657 Fe-S metabolism associated domain HRD54_RS09415 PF00266 Aminotransferase class-V HRD54_RS09420 PF01458 Uncharacterized protein family (UPF0051) HRD54_RS09425 PF00005 ABC transporter HRD54_RS09430 PF01458 Uncharacterized protein family (UPF0051) HRD54_RS09435 PF01521 Iron-sulphur cluster biosynthesis HRD54_RS09445 PF03061 Thioesterase superfamily HRD54_RS09450 PF01565 FAD binding domain HRD54_RS09450 PF13183 4Fe-4S dicluster domain HRD54_RS09450 PF02913 FAD linked oxidases, C-terminal domain HRD54_RS09455 PF01594 AI-2E family transporter HRD54_RS09460 PF00391 PEP-utilising enzyme, mobile domain HRD54_RS09460 PF02896 PEP-utilising enzyme, TIM barrel domain HRD54_RS09460 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HRD54_RS09465 PF03618 Kinase/pyrophosphorylase HRD54_RS09470 PF00793 DAHP synthetase I family HRD54_RS09475 PF10636 Hemin uptake protein hemP HRD54_RS09480 PF00593 TonB dependent receptor HRD54_RS09480 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS09485 PF00593 TonB dependent receptor HRD54_RS09485 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS09490 PF05171 Haemin-degrading HemS.ChuX domain HRD54_RS09495 PF01497 Periplasmic binding protein HRD54_RS09500 PF01032 FecCD transport family HRD54_RS09505 PF00005 ABC transporter HRD54_RS09510 PF01037 Lrp/AsnC ligand binding domain HRD54_RS09515 PF01810 LysE type translocator HRD54_RS09520 PF00155 Aminotransferase class I and II HRD54_RS09520 PF00392 Bacterial regulatory proteins, gntR family HRD54_RS09525 PF01654 Cytochrome bd terminal oxidase subunit I HRD54_RS09530 PF02322 Cytochrome bd terminal oxidase subunit II HRD54_RS09545 PF05656 Protein of unknown function (DUF805) HRD54_RS09550 PF02562 PhoH-like protein HRD54_RS09560 PF04231 Endonuclease I HRD54_RS09570 PF12821 Threonine/Serine exporter, ThrE HRD54_RS09575 PF06738 Putative threonine/serine exporter HRD54_RS09600 PF00582 Universal stress protein family HRD54_RS09610 PF00582 Universal stress protein family HRD54_RS09615 PF01256 Carbohydrate kinase HRD54_RS09620 PF10769 Protein of unknown function (DUF2594) HRD54_RS09630 PF00490 Delta-aminolevulinic acid dehydratase HRD54_RS09640 PF07969 Amidohydrolase family HRD54_RS09645 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HRD54_RS09650 PF00732 GMC oxidoreductase HRD54_RS09650 PF05199 GMC oxidoreductase HRD54_RS09655 PF00171 Aldehyde dehydrogenase family HRD54_RS09660 PF13977 BetI-type transcriptional repressor, C-terminal HRD54_RS09660 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS09665 PF02028 BCCT, betaine/carnitine/choline family transporter HRD54_RS09670 PF00155 Aminotransferase class I and II HRD54_RS09680 PF00419 Fimbrial protein HRD54_RS09685 PF00577 Outer membrane usher protein HRD54_RS09685 PF13954 PapC N-terminal domain HRD54_RS09685 PF13953 PapC C-terminal domain HRD54_RS09690 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS09690 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS09695 PF00419 Fimbrial protein HRD54_RS09700 PF00419 Fimbrial protein HRD54_RS09705 PF01381 Helix-turn-helix HRD54_RS09710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD54_RS09710 PF00005 ABC transporter HRD54_RS09715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD54_RS09715 PF00005 ABC transporter HRD54_RS09720 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS09720 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD54_RS09725 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS09730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS09735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS09740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD54_RS09740 PF14824 Sirohaem biosynthesis protein central HRD54_RS09740 PF10414 Sirohaem synthase dimerisation region HRD54_RS09745 PF13806 Rieske-like [2Fe-2S] domain HRD54_RS09750 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HRD54_RS09750 PF04324 BFD-like [2Fe-2S] binding domain HRD54_RS09750 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS09750 PF18267 Rubredoxin NAD+ reductase C-terminal domain HRD54_RS09750 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HRD54_RS09755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS09760 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS09765 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD54_RS09765 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS09770 PF00005 ABC transporter HRD54_RS09770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD54_RS09775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD54_RS09775 PF00005 ABC transporter HRD54_RS09780 PF01914 MarC family integral membrane protein HRD54_RS09785 PF00465 Iron-containing alcohol dehydrogenase HRD54_RS09785 PF00171 Aldehyde dehydrogenase family HRD54_RS09790 PF00265 Thymidine kinase HRD54_RS09795 PF00816 H-NS histone family HRD54_RS09800 PF01370 NAD dependent epimerase/dehydratase family HRD54_RS09805 PF00483 Nucleotidyl transferase HRD54_RS09810 PF00072 Response regulator receiver domain HRD54_RS09815 PF02810 SEC-C motif HRD54_RS09820 PF00551 Formyl transferase HRD54_RS09820 PF01842 ACT domain HRD54_RS09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS09830 PF03466 LysR substrate binding domain HRD54_RS09835 PF03372 Endonuclease/Exonuclease/phosphatase family HRD54_RS09840 PF01751 Toprim domain HRD54_RS09840 PF01131 DNA topoisomerase HRD54_RS09845 PF00586 AIR synthase related protein, N-terminal domain HRD54_RS09845 PF02769 AIR synthase related protein, C-terminal domain HRD54_RS09850 PF00881 Nitroreductase family HRD54_RS09855 PF01343 Peptidase family S49 HRD54_RS09860 PF17763 Glutaminase/Asparaginase C-terminal domain HRD54_RS09860 PF00710 Asparaginase, N-terminal HRD54_RS09865 PF00857 Isochorismatase family HRD54_RS09870 PF07023 Protein of unknown function (DUF1315) HRD54_RS09875 PF01641 SelR domain HRD54_RS09880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HRD54_RS09880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HRD54_RS09885 PF01263 Aldose 1-epimerase HRD54_RS09890 PF06629 MltA-interacting protein MipA HRD54_RS09895 PF17788 HypF Kae1-like domain HRD54_RS09895 PF00708 Acylphosphatase HRD54_RS09895 PF01300 Telomere recombination HRD54_RS09895 PF07503 HypF finger HRD54_RS09900 PF00842 Alanine racemase, C-terminal domain HRD54_RS09900 PF01168 Alanine racemase, N-terminal domain HRD54_RS09905 PF01266 FAD dependent oxidoreductase HRD54_RS09910 PF07840 FadR C-terminal domain HRD54_RS09910 PF00392 Bacterial regulatory proteins, gntR family HRD54_RS09915 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HRD54_RS09920 PF02600 Disulfide bond formation protein DsbB HRD54_RS09930 PF00893 Small Multidrug Resistance protein HRD54_RS09935 PF07690 Major Facilitator Superfamily HRD54_RS09950 PF03824 High-affinity nickel-transport protein HRD54_RS09955 PF06226 Protein of unknown function (DUF1007) HRD54_RS09985 PF01066 CDP-alcohol phosphatidyltransferase HRD54_RS09990 PF01541 GIY-YIG catalytic domain HRD54_RS09990 PF02151 UvrB/uvrC motif HRD54_RS09990 PF08459 UvrC Helix-hairpin-helix N-terminal HRD54_RS09995 PF00196 Bacterial regulatory proteins, luxR family HRD54_RS09995 PF00072 Response regulator receiver domain HRD54_RS10000 PF00881 Nitroreductase family HRD54_RS10005 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HRD54_RS10010 PF02126 Phosphotriesterase family HRD54_RS10025 PF00294 pfkB family carbohydrate kinase HRD54_RS10065 PF00717 Peptidase S24-like HRD54_RS10065 PF01381 Helix-turn-helix HRD54_RS10070 PF00005 ABC transporter HRD54_RS10075 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS10085 PF04198 Putative sugar-binding domain HRD54_RS10090 PF03091 CutA1 divalent ion tolerance protein HRD54_RS10105 PF10127 RNA repair pathway DNA polymerase beta family HRD54_RS10190 PF00535 Glycosyl transferase family 2 HRD54_RS10195 PF04138 GtrA-like protein HRD54_RS10285 PF04466 Phage terminase large subunit HRD54_RS10285 PF17288 Terminase RNAseH like domain HRD54_RS10315 PF05866 Endodeoxyribonuclease RusA HRD54_RS10330 PF17948 DnaT DNA-binding domain HRD54_RS10400 PF13356 Arm DNA-binding domain HRD54_RS10400 PF00589 Phage integrase family HRD54_RS10400 PF14659 Phage integrase, N-terminal SAM-like domain HRD54_RS10405 PF02540 NAD synthase HRD54_RS10405 PF00958 GMP synthase C terminal domain HRD54_RS10405 PF00117 Glutamine amidotransferase class-I HRD54_RS10410 PF00571 CBS domain HRD54_RS10410 PF00478 IMP dehydrogenase / GMP reductase domain HRD54_RS10415 PF02601 Exonuclease VII, large subunit HRD54_RS10415 PF13742 OB-fold nucleic acid binding domain HRD54_RS10420 PF00593 TonB dependent receptor HRD54_RS10420 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS10425 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HRD54_RS10425 PF00326 Prolyl oligopeptidase family HRD54_RS10440 PF03949 Malic enzyme, NAD binding domain HRD54_RS10440 PF01515 Phosphate acetyl/butaryl transferase HRD54_RS10440 PF00390 Malic enzyme, N-terminal domain HRD54_RS10445 PF00196 Bacterial regulatory proteins, luxR family HRD54_RS10445 PF00072 Response regulator receiver domain HRD54_RS10455 PF03960 ArsC family HRD54_RS10460 PF07687 Peptidase dimerisation domain HRD54_RS10460 PF01546 Peptidase family M20/M25/M40 HRD54_RS10465 PF02557 D-alanyl-D-alanine carboxypeptidase HRD54_RS10475 PF01385 Probable transposase HRD54_RS10475 PF12323 Helix-turn-helix domain HRD54_RS10475 PF07282 Putative transposase DNA-binding domain HRD54_RS10480 PF04304 Protein of unknown function (DUF454) HRD54_RS10485 PF13980 Uncharacterised protein family (UPF0370) HRD54_RS10490 PF13718 GNAT acetyltransferase 2 HRD54_RS10490 PF08351 Domain of unknown function (DUF1726) HRD54_RS10490 PF17176 tRNA-binding domain HRD54_RS10490 PF05127 Helicase HRD54_RS10495 PF04284 Protein of unknown function (DUF441) HRD54_RS10500 PF04228 Putative neutral zinc metallopeptidase HRD54_RS10505 PF01259 SAICAR synthetase HRD54_RS10510 PF06804 NlpB/DapX lipoprotein HRD54_RS10515 PF00701 Dihydrodipicolinate synthetase family HRD54_RS10520 PF01842 ACT domain HRD54_RS10525 PF00578 AhpC/TSA family HRD54_RS10530 PF01594 AI-2E family transporter HRD54_RS10535 PF07720 Tetratricopeptide repeat HRD54_RS10535 PF01435 Peptidase family M48 HRD54_RS10540 PF03960 ArsC family HRD54_RS10545 PF03825 Nucleoside H+ symporter HRD54_RS10550 PF00308 Bacterial dnaA protein HRD54_RS10555 PF00924 Mechanosensitive ion channel HRD54_RS10560 PF00860 Permease family HRD54_RS10570 PF02769 AIR synthase related protein, C-terminal domain HRD54_RS10570 PF00586 AIR synthase related protein, N-terminal domain HRD54_RS10575 PF00551 Formyl transferase HRD54_RS10580 PF13302 Acetyltransferase (GNAT) domain HRD54_RS10585 PF02503 Polyphosphate kinase middle domain HRD54_RS10585 PF13089 Polyphosphate kinase N-terminal domain HRD54_RS10585 PF17941 Polyphosphate kinase C-terminal domain 1 HRD54_RS10585 PF13090 Polyphosphate kinase C-terminal domain 2 HRD54_RS10590 PF02541 Ppx/GppA phosphatase family HRD54_RS10595 PF03448 MgtE intracellular N domain HRD54_RS10595 PF01769 Divalent cation transporter HRD54_RS10595 PF00571 CBS domain HRD54_RS10605 PF07690 Major Facilitator Superfamily HRD54_RS10620 PF00854 POT family HRD54_RS10625 PF13533 Biotin-lipoyl like HRD54_RS10630 PF00873 AcrB/AcrD/AcrF family HRD54_RS10635 PF00873 AcrB/AcrD/AcrF family HRD54_RS10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS10640 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS10640 PF00672 HAMP domain HRD54_RS10645 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS10645 PF00072 Response regulator receiver domain HRD54_RS10655 PF00781 Diacylglycerol kinase catalytic domain HRD54_RS10660 PF01791 DeoC/LacD family aldolase HRD54_RS10665 PF08543 Phosphomethylpyrimidine kinase HRD54_RS10675 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP HRD54_RS10680 PF00324 Amino acid permease HRD54_RS10690 PF12833 Helix-turn-helix domain HRD54_RS10700 PF05525 Branched-chain amino acid transport protein HRD54_RS10705 PF01510 N-acetylmuramoyl-L-alanine amidase HRD54_RS10710 PF01235 Sodium:alanine symporter family HRD54_RS10715 PF06440 DNA polymerase III, theta subunit HRD54_RS10720 PF13995 YebF-like protein HRD54_RS10725 PF03701 Uncharacterised protein family (UPF0181) HRD54_RS10730 PF04715 Anthranilate synthase component I, N terminal region HRD54_RS10730 PF00425 chorismate binding enzyme HRD54_RS10735 PF00293 NUDIX domain HRD54_RS10740 PF03315 Serine dehydratase beta chain HRD54_RS10740 PF03313 Serine dehydratase alpha chain HRD54_RS10745 PF02659 Putative manganese efflux pump HRD54_RS10750 PF13847 Methyltransferase domain HRD54_RS10755 PF06146 Phosphate-starvation-inducible E HRD54_RS10760 PF00582 Universal stress protein family HRD54_RS10770 PF00582 Universal stress protein family HRD54_RS10775 PF00324 Amino acid permease HRD54_RS10785 PF00474 Sodium:solute symporter family HRD54_RS10790 PF14850 DNA-binding domain of Proline dehydrogenase HRD54_RS10790 PF00171 Aldehyde dehydrogenase family HRD54_RS10790 PF01619 Proline dehydrogenase HRD54_RS10790 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HRD54_RS10795 PF02899 Phage integrase, N-terminal SAM-like domain HRD54_RS10800 PF04542 Sigma-70 region 2 HRD54_RS10800 PF04545 Sigma-70, region 4 HRD54_RS10800 PF04539 Sigma-70 region 3 HRD54_RS10805 PF00669 Bacterial flagellin N-terminal helical region HRD54_RS10805 PF00700 Bacterial flagellin C-terminal helical region HRD54_RS10810 PF00700 Bacterial flagellin C-terminal helical region HRD54_RS10810 PF00669 Bacterial flagellin N-terminal helical region HRD54_RS10815 PF07195 Flagellar hook-associated protein 2 C-terminus HRD54_RS10815 PF02465 Flagellar hook-associated protein 2 N-terminus HRD54_RS10815 PF07196 Flagellin hook IN motif HRD54_RS10820 PF02561 Flagellar protein FliS HRD54_RS10825 PF05400 Flagellar protein FliT HRD54_RS10845 PF02049 Flagellar hook-basal body complex protein FliE HRD54_RS10850 PF01514 Secretory protein of YscJ/FliF family HRD54_RS10850 PF08345 Flagellar M-ring protein C-terminal HRD54_RS10855 PF01706 FliG C-terminal domain HRD54_RS10855 PF14841 FliG middle domain HRD54_RS10855 PF14842 FliG N-terminal domain HRD54_RS10860 PF02108 Flagellar assembly protein FliH HRD54_RS10865 PF18269 T3SS EscN ATPase C-terminal domain HRD54_RS10865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD54_RS10870 PF02050 Flagellar FliJ protein HRD54_RS10875 PF02120 Flagellar hook-length control protein FliK HRD54_RS10880 PF03748 Flagellar basal body-associated protein FliL HRD54_RS10885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRD54_RS10885 PF02154 Flagellar motor switch protein FliM HRD54_RS10890 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRD54_RS10890 PF16973 Flagellar motor switch protein FliN N-terminal HRD54_RS10895 PF04347 Flagellar biosynthesis protein, FliO HRD54_RS10900 PF00813 FliP family HRD54_RS10905 PF01313 Bacterial export proteins, family 3 HRD54_RS10910 PF01311 Bacterial export proteins, family 1 HRD54_RS10915 PF00669 Bacterial flagellin N-terminal helical region HRD54_RS10920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD54_RS10920 PF00460 Flagella basal body rod protein HRD54_RS10925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HRD54_RS10925 PF10135 Rod binding protein HRD54_RS10930 PF02119 Flagellar P-ring protein HRD54_RS10935 PF02107 Flagellar L-ring protein HRD54_RS10940 PF00460 Flagella basal body rod protein HRD54_RS10940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD54_RS10945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD54_RS10945 PF00460 Flagella basal body rod protein HRD54_RS10950 PF07559 Flagellar basal body protein FlaE HRD54_RS10950 PF00460 Flagella basal body rod protein HRD54_RS10950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD54_RS10955 PF13860 FlgD Ig-like domain HRD54_RS10955 PF03963 Flagellar hook capping protein - N-terminal region HRD54_RS10955 PF13861 FlgD Tudor-like domain HRD54_RS10960 PF00460 Flagella basal body rod protein HRD54_RS10960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD54_RS10965 PF00460 Flagella basal body rod protein HRD54_RS10970 PF13144 Chaperone for flagella basal body P-ring formation HRD54_RS10970 PF17656 FlgA N-terminal domain HRD54_RS10975 PF04316 Anti-sigma-28 factor, FlgM HRD54_RS10980 PF05130 FlgN protein HRD54_RS10985 PF13018 Extended Signal Peptide of Type V secretion system HRD54_RS10985 PF05860 haemagglutination activity domain HRD54_RS10985 PF13332 Hemagglutinin repeat HRD54_RS10985 PF04829 Pre-toxin domain with VENN motif HRD54_RS10990 PF00771 FHIPEP family HRD54_RS10995 PF01312 FlhB HrpN YscU SpaS Family HRD54_RS11005 PF04344 Chemotaxis phosphatase, CheZ HRD54_RS11010 PF00072 Response regulator receiver domain HRD54_RS11015 PF00072 Response regulator receiver domain HRD54_RS11015 PF01339 CheB methylesterase HRD54_RS11020 PF03705 CheR methyltransferase, all-alpha domain HRD54_RS11020 PF01739 CheR methyltransferase, SAM binding domain HRD54_RS11025 PF02203 Tar ligand binding domain homologue HRD54_RS11025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS11025 PF00672 HAMP domain HRD54_RS11030 PF00672 HAMP domain HRD54_RS11030 PF02203 Tar ligand binding domain homologue HRD54_RS11030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS11035 PF01584 CheW-like domain HRD54_RS11040 PF01627 Hpt domain HRD54_RS11040 PF09078 CheY binding HRD54_RS11040 PF02895 Signal transducing histidine kinase, homodimeric domain HRD54_RS11040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS11040 PF01584 CheW-like domain HRD54_RS11045 PF13677 Membrane MotB of proton-channel complex MotA/MotB HRD54_RS11045 PF00691 OmpA family HRD54_RS11050 PF01618 MotA/TolQ/ExbB proton channel family HRD54_RS11055 PF05280 Flagellar transcriptional activator (FlhC) HRD54_RS11060 PF05247 Flagellar transcriptional activator (FlhD) HRD54_RS11065 PF02308 MgtC family HRD54_RS11070 PF10781 Dextransucrase DSRB HRD54_RS11075 PF00313 'Cold-shock' DNA-binding domain HRD54_RS11080 PF10777 Inner membrane protein YlaC HRD54_RS11105 PF01979 Amidohydrolase family HRD54_RS11110 PF13991 BssS protein family HRD54_RS11120 PF01568 Molydopterin dinucleotide binding domain HRD54_RS11120 PF00384 Molybdopterin oxidoreductase HRD54_RS11120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS11125 PF03916 Polysulphide reductase, NrfD HRD54_RS11130 PF13247 4Fe-4S dicluster domain HRD54_RS11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS11135 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS11140 PF00196 Bacterial regulatory proteins, luxR family HRD54_RS11140 PF00072 Response regulator receiver domain HRD54_RS11145 PF03279 Bacterial lipid A biosynthesis acyltransferase HRD54_RS11150 PF07690 Major Facilitator Superfamily HRD54_RS11155 PF00854 POT family HRD54_RS11160 PF02567 Phenazine biosynthesis-like protein HRD54_RS11165 PF03061 Thioesterase superfamily HRD54_RS11175 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS11180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HRD54_RS11190 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS11190 PF00072 Response regulator receiver domain HRD54_RS11195 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS11195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS11205 PF03591 AzlC protein HRD54_RS11215 PF01063 Amino-transferase class IV HRD54_RS11220 PF03729 Short repeat of unknown function (DUF308) HRD54_RS11225 PF00924 Mechanosensitive ion channel HRD54_RS11230 PF01568 Molydopterin dinucleotide binding domain HRD54_RS11230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS11230 PF00384 Molybdopterin oxidoreductase HRD54_RS11235 PF12800 4Fe-4S binding domain HRD54_RS11235 PF13247 4Fe-4S dicluster domain HRD54_RS11240 PF04976 DMSO reductase anchor subunit (DmsC) HRD54_RS11250 PF10753 Toxin GhoT_OrtT HRD54_RS11345 PF00579 tRNA synthetases class I (W and Y) HRD54_RS11370 PF16359 RcsD-ABL domain HRD54_RS11370 PF01627 Hpt domain HRD54_RS11370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS11375 PF00196 Bacterial regulatory proteins, luxR family HRD54_RS11375 PF00072 Response regulator receiver domain HRD54_RS11380 PF00072 Response regulator receiver domain HRD54_RS11380 PF09456 RcsC Alpha-Beta-Loop (ABL) HRD54_RS11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS11380 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS11385 PF00521 DNA gyrase/topoisomerase IV, subunit A HRD54_RS11385 PF03989 DNA gyrase C-terminal domain, beta-propeller HRD54_RS11395 PF03477 ATP cone domain HRD54_RS11395 PF02867 Ribonucleotide reductase, barrel domain HRD54_RS11395 PF00317 Ribonucleotide reductase, all-alpha domain HRD54_RS11400 PF00268 Ribonucleotide reductase, small chain HRD54_RS11405 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD54_RS11410 PF06004 Bacterial protein of unknown function (DUF903) HRD54_RS11415 PF03222 Tryptophan/tyrosine permease family HRD54_RS11420 PF07437 YfaZ precursor HRD54_RS11425 PF00199 Catalase HRD54_RS11425 PF06628 Catalase-related immune-responsive HRD54_RS11430 PF00501 AMP-binding enzyme HRD54_RS11430 PF13193 AMP-binding enzyme C-terminal domain HRD54_RS11435 PF13378 Enolase C-terminal domain-like HRD54_RS11440 PF00378 Enoyl-CoA hydratase/isomerase HRD54_RS11445 PF12697 Alpha/beta hydrolase family HRD54_RS11450 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD54_RS11450 PF16582 Middle domain of thiamine pyrophosphate HRD54_RS11455 PF00425 chorismate binding enzyme HRD54_RS11470 PF00361 Proton-conducting membrane transporter HRD54_RS11475 PF00361 Proton-conducting membrane transporter HRD54_RS11480 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HRD54_RS11480 PF00361 Proton-conducting membrane transporter HRD54_RS11485 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HRD54_RS11490 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HRD54_RS11495 PF12838 4Fe-4S dicluster domain HRD54_RS11500 PF00146 NADH dehydrogenase HRD54_RS11505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HRD54_RS11505 PF01568 Molydopterin dinucleotide binding domain HRD54_RS11505 PF00384 Molybdopterin oxidoreductase HRD54_RS11505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS11510 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HRD54_RS11510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HRD54_RS11510 PF10531 SLBB domain HRD54_RS11520 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HRD54_RS11520 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HRD54_RS11525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HRD54_RS11530 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HRD54_RS11535 PF03466 LysR substrate binding domain HRD54_RS11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS11540 PF00155 Aminotransferase class I and II HRD54_RS11550 PF03600 Citrate transporter HRD54_RS11550 PF02080 TrkA-C domain HRD54_RS11555 PF13419 Haloacid dehalogenase-like hydrolase HRD54_RS11560 PF03887 YfbU domain HRD54_RS11565 PF04217 Protein of unknown function, DUF412 HRD54_RS11570 PF00871 Acetokinase family HRD54_RS11575 PF07085 DRTGG domain HRD54_RS11575 PF01515 Phosphate acetyl/butaryl transferase HRD54_RS11580 PF01848 Hok/gef family HRD54_RS11585 PF01848 Hok/gef family HRD54_RS11590 PF01848 Hok/gef family HRD54_RS11595 PF01011 PQQ enzyme repeat HRD54_RS11600 PF01168 Alanine racemase, N-terminal domain HRD54_RS11600 PF00842 Alanine racemase, C-terminal domain HRD54_RS11605 PF03611 PTS system sugar-specific permease component HRD54_RS11615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRD54_RS11620 PF13407 Periplasmic binding protein domain HRD54_RS11620 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS11625 PF00293 NUDIX domain HRD54_RS11630 PF00043 Glutathione S-transferase, C-terminal domain HRD54_RS11630 PF02798 Glutathione S-transferase, N-terminal domain HRD54_RS11635 PF08338 Domain of unknown function (DUF1731) HRD54_RS11635 PF01370 NAD dependent epimerase/dehydratase family HRD54_RS11640 PF02441 Flavoprotein HRD54_RS11645 PF00156 Phosphoribosyl transferase domain HRD54_RS11650 PF02674 Colicin V production protein HRD54_RS11655 PF05036 Sporulation related domain HRD54_RS11660 PF02875 Mur ligase family, glutamate ligase domain HRD54_RS11660 PF08245 Mur ligase middle domain HRD54_RS11665 PF01039 Carboxyl transferase domain HRD54_RS11665 PF17848 Acetyl-coA carboxylase zinc finger domain HRD54_RS11670 PF09335 SNARE associated Golgi protein HRD54_RS11675 PF01416 tRNA pseudouridine synthase HRD54_RS11680 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRD54_RS11680 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRD54_RS11685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD54_RS11685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD54_RS11685 PF11890 Domain of unknown function (DUF3410) HRD54_RS11690 PF12833 Helix-turn-helix domain HRD54_RS11695 PF00892 EamA-like transporter family HRD54_RS11700 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD54_RS11700 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD54_RS11705 PF01266 FAD dependent oxidoreductase HRD54_RS11705 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HRD54_RS11710 PF00583 Acetyltransferase (GNAT) family HRD54_RS11720 PF08891 YfcL protein HRD54_RS11725 PF04315 Elongation factor P hydroxylase HRD54_RS11730 PF01925 Sulfite exporter TauE/SafE HRD54_RS11735 PF01264 Chorismate synthase HRD54_RS11740 PF05175 Methyltransferase small domain HRD54_RS11745 PF00210 Ferritin-like domain HRD54_RS11750 PF01713 Smr domain HRD54_RS11755 PF00300 Histidine phosphatase superfamily (branch 1) HRD54_RS11760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HRD54_RS11760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HRD54_RS11760 PF00378 Enoyl-CoA hydratase/isomerase HRD54_RS11765 PF02803 Thiolase, C-terminal domain HRD54_RS11765 PF00108 Thiolase, N-terminal domain HRD54_RS11770 PF04175 Protein of unknown function (DUF406) HRD54_RS11775 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HRD54_RS11780 PF04333 MlaA lipoprotein HRD54_RS11790 PF06440 DNA polymerase III, theta subunit HRD54_RS11955 PF03796 DnaB-like helicase C terminal domain HRD54_RS11955 PF00772 DnaB-like helicase N terminal domain HRD54_RS12040 PF12684 PDDEXK-like domain of unknown function (DUF3799) HRD54_RS12040 PF06630 Enterobacterial exodeoxyribonuclease VIII HRD54_RS12045 PF03837 RecT family HRD54_RS12050 PF00436 Single-strand binding protein family HRD54_RS12110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS12110 PF01568 Molydopterin dinucleotide binding domain HRD54_RS12110 PF00384 Molybdopterin oxidoreductase HRD54_RS12115 PF12800 4Fe-4S binding domain HRD54_RS12115 PF13247 4Fe-4S dicluster domain HRD54_RS12120 PF01292 Prokaryotic cytochrome b561 HRD54_RS12125 PF01381 Helix-turn-helix HRD54_RS12170 PF00749 tRNA synthetases class I (E and Q), catalytic domain HRD54_RS12195 PF12843 Putative quorum-sensing-regulated virulence factor HRD54_RS12200 PF07662 Na+ dependent nucleoside transporter C-terminus HRD54_RS12200 PF01773 Na+ dependent nucleoside transporter N-terminus HRD54_RS12200 PF07670 Nucleoside recognition HRD54_RS12205 PF00533 BRCA1 C Terminus (BRCT) domain HRD54_RS12205 PF01653 NAD-dependent DNA ligase adenylation domain HRD54_RS12205 PF03120 NAD-dependent DNA ligase OB-fold domain HRD54_RS12205 PF12826 Helix-hairpin-helix motif HRD54_RS12205 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HRD54_RS12210 PF04354 ZipA, C-terminal FtsZ-binding domain HRD54_RS12220 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS12225 PF00381 PTS HPr component phosphorylation site HRD54_RS12230 PF02896 PEP-utilising enzyme, TIM barrel domain HRD54_RS12230 PF00391 PEP-utilising enzyme, mobile domain HRD54_RS12230 PF05524 PEP-utilising enzyme, N-terminal HRD54_RS12235 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD54_RS12240 PF00291 Pyridoxal-phosphate dependent enzyme HRD54_RS12245 PF00005 ABC transporter HRD54_RS12250 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS12255 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS12265 PF04261 Dyp-type peroxidase family HRD54_RS12270 PF06572 Protein of unknown function (DUF1131) HRD54_RS12275 PF00583 Acetyltransferase (GNAT) family HRD54_RS12280 PF01218 Coproporphyrinogen III oxidase HRD54_RS12290 PF01926 50S ribosome-binding GTPase HRD54_RS12290 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HRD54_RS12295 PF13360 PQQ-like domain HRD54_RS12300 PF09976 Tetratricopeptide repeat-like domain HRD54_RS12305 PF03129 Anticodon binding domain HRD54_RS12305 PF13393 Histidyl-tRNA synthetase HRD54_RS12310 PF04551 GcpE protein HRD54_RS12315 PF13464 Domain of unknown function (DUF4115) HRD54_RS12325 PF04055 Radical SAM superfamily HRD54_RS12330 PF00334 Nucleoside diphosphate kinase HRD54_RS12335 PF00905 Penicillin binding protein transpeptidase domain HRD54_RS12335 PF06832 Penicillin-Binding Protein C-terminus Family HRD54_RS12335 PF00912 Transglycosylase HRD54_RS12340 PF17962 Bacterial macroglobulin domain 6 HRD54_RS12340 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HRD54_RS12340 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HRD54_RS12340 PF07678 A-macroglobulin TED domain HRD54_RS12340 PF01835 MG2 domain HRD54_RS12340 PF00207 Alpha-2-macroglobulin family HRD54_RS12340 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HRD54_RS12340 PF07703 Alpha-2-macroglobulin bait region domain HRD54_RS12340 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HRD54_RS12345 PF14581 SseB protein C-terminal domain HRD54_RS12345 PF07179 SseB protein N-terminal domain HRD54_RS12350 PF12404 Peptidase HRD54_RS12350 PF00883 Cytosol aminopeptidase family, catalytic domain HRD54_RS12355 PF04384 Iron-sulphur cluster assembly HRD54_RS12360 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD54_RS12365 PF00012 Hsp70 protein HRD54_RS12370 PF00226 DnaJ domain HRD54_RS12370 PF07743 HSCB C-terminal oligomerisation domain HRD54_RS12375 PF01521 Iron-sulphur cluster biosynthesis HRD54_RS12380 PF01592 NifU-like N terminal domain HRD54_RS12385 PF00266 Aminotransferase class-V HRD54_RS12390 PF02082 Transcriptional regulator HRD54_RS12395 PF00588 SpoU rRNA Methylase family HRD54_RS12400 PF00459 Inositol monophosphatase family HRD54_RS12415 PF12832 MFS_1 like family HRD54_RS12420 PF00464 Serine hydroxymethyltransferase HRD54_RS12425 PF00175 Oxidoreductase NAD-binding domain HRD54_RS12425 PF00042 Globin HRD54_RS12425 PF00970 Oxidoreductase FAD-binding domain HRD54_RS12435 PF00543 Nitrogen regulatory protein P-II HRD54_RS12440 PF00795 Carbon-nitrogen hydrolase HRD54_RS12440 PF02540 NAD synthase HRD54_RS12445 PF00072 Response regulator receiver domain HRD54_RS12445 PF00158 Sigma-54 interaction domain HRD54_RS12450 PF13942 YfhG lipoprotein HRD54_RS12455 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS12455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS12460 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HRD54_RS12460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HRD54_RS12460 PF02769 AIR synthase related protein, C-terminal domain HRD54_RS12465 PF01464 Transglycosylase SLT domain HRD54_RS12465 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD54_RS12470 PF00419 Fimbrial protein HRD54_RS12475 PF00577 Outer membrane usher protein HRD54_RS12475 PF13954 PapC N-terminal domain HRD54_RS12475 PF13953 PapC C-terminal domain HRD54_RS12480 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS12480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS12485 PF00419 Fimbrial protein HRD54_RS12490 PF00419 Fimbrial protein HRD54_RS12495 PF14437 MafB19-like deaminase HRD54_RS12500 PF12838 4Fe-4S dicluster domain HRD54_RS12505 PF01648 4'-phosphopantetheinyl transferase superfamily HRD54_RS12510 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HRD54_RS12515 PF02565 Recombination protein O C terminal HRD54_RS12515 PF11967 Recombination protein O N terminal HRD54_RS12520 PF01926 50S ribosome-binding GTPase HRD54_RS12520 PF07650 KH domain HRD54_RS12525 PF00035 Double-stranded RNA binding motif HRD54_RS12525 PF14622 Ribonuclease-III-like HRD54_RS12530 PF10502 Signal peptidase, peptidase S26 HRD54_RS12535 PF00009 Elongation factor Tu GTP binding domain HRD54_RS12535 PF06421 GTP-binding protein LepA C-terminus HRD54_RS12535 PF03144 Elongation factor Tu domain 2 HRD54_RS12535 PF00679 Elongation factor G C-terminus HRD54_RS12545 PF17188 MucB/RseB C-terminal domain HRD54_RS12545 PF03888 MucB/RseB N-terminal domain HRD54_RS12550 PF03873 Anti sigma-E protein RseA, C-terminal domain HRD54_RS12550 PF03872 Anti sigma-E protein RseA, N-terminal domain HRD54_RS12555 PF08281 Sigma-70, region 4 HRD54_RS12555 PF04542 Sigma-70 region 2 HRD54_RS12560 PF05175 Methyltransferase small domain HRD54_RS12565 PF00270 DEAD/DEAH box helicase HRD54_RS12565 PF00271 Helicase conserved C-terminal domain HRD54_RS12570 PF01228 Glycine radical HRD54_RS12575 PF03167 Uracil DNA glycosylase superfamily HRD54_RS12580 PF01025 GrpE HRD54_RS12585 PF01513 ATP-NAD kinase HRD54_RS12590 PF02463 RecF/RecN/SMC N terminal domain HRD54_RS12595 PF04355 SmpA / OmlA family HRD54_RS12600 PF03658 RnfH family Ubiquitin HRD54_RS12605 PF03364 Polyketide cyclase / dehydrase and lipid transport HRD54_RS12610 PF01668 SmpB protein HRD54_RS12645 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HRD54_RS12645 PF18766 SWI2/SNF2 ATPase HRD54_RS12645 PF11867 Domain of unknown function (DUF3387) HRD54_RS12650 PF01420 Type I restriction modification DNA specificity domain HRD54_RS12655 PF02384 N-6 DNA Methylase HRD54_RS12705 PF06039 Malate:quinone oxidoreductase (Mqo) HRD54_RS12720 PF02525 Flavodoxin-like fold HRD54_RS12725 PF02652 L-lactate permease HRD54_RS12730 PF02754 Cysteine-rich domain HRD54_RS12735 PF02589 LUD domain HRD54_RS12735 PF13183 4Fe-4S dicluster domain HRD54_RS12735 PF11870 Domain of unknown function (DUF3390) HRD54_RS12740 PF02589 LUD domain HRD54_RS12755 PF03692 Putative zinc- or iron-chelating domain HRD54_RS12760 PF06940 Domain of unknown function (DUF1287) HRD54_RS12765 PF07690 Major Facilitator Superfamily HRD54_RS12770 PF00756 Putative esterase HRD54_RS12775 PF07715 TonB-dependent Receptor Plug Domain HRD54_RS12775 PF00593 TonB dependent receptor HRD54_RS12780 PF00474 Sodium:solute symporter family HRD54_RS12785 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS12790 PF01263 Aldose 1-epimerase HRD54_RS12795 PF00288 GHMP kinases N terminal domain HRD54_RS12795 PF08544 GHMP kinases C terminal HRD54_RS12795 PF10509 Galactokinase galactose-binding signature HRD54_RS12800 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HRD54_RS12800 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HRD54_RS12805 PF16363 GDP-mannose 4,6 dehydratase HRD54_RS12810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD54_RS12810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD54_RS12815 PF01545 Cation efflux family HRD54_RS12815 PF16916 Dimerisation domain of Zinc Transporter HRD54_RS12820 PF00582 Universal stress protein family HRD54_RS12825 PF03974 Ecotin HRD54_RS12830 PF04325 Protein of unknown function (DUF465) HRD54_RS12835 PF10678 Protein of unknown function (DUF2492) HRD54_RS12845 PF11756 Nitrous oxide-stimulated promoter HRD54_RS12850 PF13302 Acetyltransferase (GNAT) domain HRD54_RS12860 PF12833 Helix-turn-helix domain HRD54_RS12880 PF03358 NADPH-dependent FMN reductase HRD54_RS12895 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS12895 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS12905 PF13954 PapC N-terminal domain HRD54_RS12905 PF13953 PapC C-terminal domain HRD54_RS12905 PF00577 Outer membrane usher protein HRD54_RS12910 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS12910 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS12915 PF16970 Type-1 fimbrial protein, A HRD54_RS12940 PF13505 Outer membrane protein beta-barrel domain HRD54_RS12955 PF01336 OB-fold nucleic acid binding domain HRD54_RS12955 PF00152 tRNA synthetases class II (D, K and N) HRD54_RS12965 PF17768 RecJ OB domain HRD54_RS12965 PF01368 DHH family HRD54_RS12965 PF02272 DHHA1 domain HRD54_RS12970 PF10411 Disulfide bond isomerase protein N-terminus HRD54_RS12970 PF13098 Thioredoxin-like domain HRD54_RS12975 PF00589 Phage integrase family HRD54_RS12975 PF02899 Phage integrase, N-terminal SAM-like domain HRD54_RS12980 PF00258 Flavodoxin HRD54_RS12985 PF07254 Membrane-bound toxin component of toxin-antitoxin system HRD54_RS12990 PF03937 Flavinator of succinate dehydrogenase HRD54_RS12995 PF01571 Aminomethyltransferase folate-binding domain HRD54_RS13005 PF02347 Glycine cleavage system P-protein HRD54_RS13010 PF01597 Glycine cleavage H-protein HRD54_RS13015 PF08669 Glycine cleavage T-protein C-terminal barrel domain HRD54_RS13015 PF01571 Aminomethyltransferase folate-binding domain HRD54_RS13020 PF01494 FAD binding domain HRD54_RS13025 PF01494 FAD binding domain HRD54_RS13030 PF00557 Metallopeptidase family M24 HRD54_RS13030 PF05195 Aminopeptidase P, N-terminal domain HRD54_RS13035 PF03695 Uncharacterised protein family (UPF0149) HRD54_RS13040 PF05164 Cell division protein ZapA HRD54_RS13050 PF01812 5-formyltetrahydrofolate cyclo-ligase family HRD54_RS13055 PF03412 Peptidase C39 family HRD54_RS13055 PF00005 ABC transporter HRD54_RS13055 PF00664 ABC transporter transmembrane region HRD54_RS13065 PF00005 ABC transporter HRD54_RS13065 PF00664 ABC transporter transmembrane region HRD54_RS13065 PF03412 Peptidase C39 family HRD54_RS13070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD54_RS13070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD54_RS13070 PF01842 ACT domain HRD54_RS13075 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HRD54_RS13080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS13080 PF03466 LysR substrate binding domain HRD54_RS13095 PF04402 Protein of unknown function (DUF541) HRD54_RS13100 PF01810 LysE type translocator HRD54_RS13105 PF00924 Mechanosensitive ion channel HRD54_RS13105 PF05552 Conserved TM helix HRD54_RS13110 PF06062 Uncharacterised protein family (UPF0231) HRD54_RS13115 PF06434 Aconitate hydratase 2 N-terminus HRD54_RS13115 PF00330 Aconitase family (aconitate hydratase) HRD54_RS13115 PF11791 Aconitate B N-terminal domain HRD54_RS13130 PF11647 Membrane Localization Domain HRD54_RS13130 PF12146 Serine aminopeptidase, S33 HRD54_RS13130 PF11713 Peptidase C80 family HRD54_RS13130 PF07634 RtxA repeat HRD54_RS13130 PF16671 Actin cross-linking domain HRD54_RS13135 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS13135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRD54_RS13140 PF02817 e3 binding domain HRD54_RS13140 PF00364 Biotin-requiring enzyme HRD54_RS13140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HRD54_RS13145 PF00456 Transketolase, thiamine diphosphate binding domain HRD54_RS13145 PF17831 Pyruvate dehydrogenase E1 component middle domain HRD54_RS13150 PF00392 Bacterial regulatory proteins, gntR family HRD54_RS13150 PF07729 FCD domain HRD54_RS13155 PF01510 N-acetylmuramoyl-L-alanine amidase HRD54_RS13160 PF07963 Prokaryotic N-terminal methylation motif HRD54_RS13165 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HRD54_RS13165 PF00437 Type II/IV secretion system protein HRD54_RS13170 PF00482 Type II secretion system (T2SS), protein F HRD54_RS13175 PF01121 Dephospho-CoA kinase HRD54_RS13180 PF07072 Cell division protein HRD54_RS13185 PF03884 DNA gyrase inhibitor YacG HRD54_RS13190 PF00293 NUDIX domain HRD54_RS13195 PF17287 POTRA domain HRD54_RS13195 PF08479 POTRA domain, ShlB-type HRD54_RS13195 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HRD54_RS13200 PF13332 Hemagglutinin repeat HRD54_RS13200 PF05860 haemagglutination activity domain HRD54_RS13205 PF00403 Heavy-metal-associated domain HRD54_RS13210 PF09278 MerR, DNA binding HRD54_RS13210 PF00376 MerR family regulatory protein HRD54_RS13215 PF07517 SecA DEAD-like domain HRD54_RS13215 PF01043 SecA preprotein cross-linking domain HRD54_RS13215 PF07516 SecA Wing and Scaffold domain HRD54_RS13215 PF02810 SEC-C motif HRD54_RS13220 PF06558 Secretion monitor precursor protein (SecM) HRD54_RS13230 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HRD54_RS13235 PF12327 FtsZ family, C-terminal domain HRD54_RS13235 PF00091 Tubulin/FtsZ family, GTPase domain HRD54_RS13240 PF02491 SHS2 domain inserted in FTSA HRD54_RS13245 PF03799 Cell division protein FtsQ HRD54_RS13245 PF08478 POTRA domain, FtsQ-type HRD54_RS13255 PF01225 Mur ligase family, catalytic domain HRD54_RS13255 PF02875 Mur ligase family, glutamate ligase domain HRD54_RS13255 PF08245 Mur ligase middle domain HRD54_RS13260 PF03033 Glycosyltransferase family 28 N-terminal domain HRD54_RS13260 PF04101 Glycosyltransferase family 28 C-terminal domain HRD54_RS13265 PF01098 Cell cycle protein HRD54_RS13270 PF02875 Mur ligase family, glutamate ligase domain HRD54_RS13270 PF08245 Mur ligase middle domain HRD54_RS13275 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HRD54_RS13275 PF00953 Glycosyl transferase family 4 HRD54_RS13280 PF08245 Mur ligase middle domain HRD54_RS13280 PF01225 Mur ligase family, catalytic domain HRD54_RS13280 PF02875 Mur ligase family, glutamate ligase domain HRD54_RS13285 PF08245 Mur ligase middle domain HRD54_RS13285 PF01225 Mur ligase family, catalytic domain HRD54_RS13285 PF02875 Mur ligase family, glutamate ligase domain HRD54_RS13290 PF00905 Penicillin binding protein transpeptidase domain HRD54_RS13290 PF03717 Penicillin-binding Protein dimerisation domain HRD54_RS13295 PF04999 Cell division protein FtsL HRD54_RS13300 PF01795 MraW methylase family HRD54_RS13305 PF02381 MraZ protein, putative antitoxin-like HRD54_RS13310 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS13310 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD54_RS13315 PF00501 AMP-binding enzyme HRD54_RS13320 PF03466 LysR substrate binding domain HRD54_RS13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS13325 PF00682 HMGL-like HRD54_RS13325 PF08502 LeuA allosteric (dimerisation) domain HRD54_RS13330 PF00180 Isocitrate/isopropylmalate dehydrogenase HRD54_RS13335 PF00330 Aconitase family (aconitate hydratase) HRD54_RS13340 PF00694 Aconitase C-terminal domain HRD54_RS13345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS13345 PF12793 Sugar transport-related sRNA regulator N-term HRD54_RS13350 PF02976 DNA mismatch repair enzyme MutH HRD54_RS13360 PF05973 Phage derived protein Gp49-like (DUF891) HRD54_RS13365 PF00106 short chain dehydrogenase HRD54_RS13370 PF00491 Arginase family HRD54_RS13375 PF17944 Arginine decarboxylase C-terminal helical extension HRD54_RS13375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HRD54_RS13375 PF17810 Arginine decarboxylase helical bundle domain HRD54_RS13380 PF02772 S-adenosylmethionine synthetase, central domain HRD54_RS13380 PF02773 S-adenosylmethionine synthetase, C-terminal domain HRD54_RS13380 PF00438 S-adenosylmethionine synthetase, N-terminal domain HRD54_RS13385 PF11658 Cellulose biosynthesis protein BcsG HRD54_RS13395 PF06564 Cellulose biosynthesis protein BcsQ HRD54_RS13400 PF07238 PilZ domain HRD54_RS13400 PF00535 Glycosyl transferase family 2 HRD54_RS13405 PF03170 Bacterial cellulose synthase subunit HRD54_RS13410 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HRD54_RS13420 PF04143 Sulphur transport HRD54_RS13430 PF10263 SprT-like family HRD54_RS13430 PF17283 SprT-like zinc ribbon domain HRD54_RS13435 PF03448 MgtE intracellular N domain HRD54_RS13435 PF01769 Divalent cation transporter HRD54_RS13435 PF00571 CBS domain HRD54_RS13445 PF00970 Oxidoreductase FAD-binding domain HRD54_RS13445 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD54_RS13445 PF00175 Oxidoreductase NAD-binding domain HRD54_RS13450 PF03063 Prismane/CO dehydrogenase family HRD54_RS13455 PF00171 Aldehyde dehydrogenase family HRD54_RS13460 PF01235 Sodium:alanine symporter family HRD54_RS13465 PF00654 Voltage gated chloride channel HRD54_RS13470 PF09313 Domain of unknown function (DUF1971) HRD54_RS13470 PF03848 Tellurite resistance protein TehB HRD54_RS13475 PF02254 TrkA-N domain HRD54_RS13475 PF07885 Ion channel HRD54_RS13480 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family HRD54_RS13485 PF04264 YceI-like domain HRD54_RS13490 PF01292 Prokaryotic cytochrome b561 HRD54_RS13500 PF05662 Coiled stalk of trimeric autotransporter adhesin HRD54_RS13500 PF05658 Head domain of trimeric autotransporter adhesin HRD54_RS13500 PF13018 Extended Signal Peptide of Type V secretion system HRD54_RS13500 PF03895 YadA-like membrane anchor domain HRD54_RS13510 PF00884 Sulfatase HRD54_RS13525 PF09092 Lyase, N terminal HRD54_RS13525 PF09093 Lyase, catalytic HRD54_RS13525 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HRD54_RS13525 PF02278 Polysaccharide lyase family 8, super-sandwich domain HRD54_RS13530 PF02278 Polysaccharide lyase family 8, super-sandwich domain HRD54_RS13530 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HRD54_RS13530 PF09093 Lyase, catalytic HRD54_RS13530 PF09092 Lyase, N terminal HRD54_RS13535 PF07470 Glycosyl Hydrolase Family 88 HRD54_RS13545 PF04962 KduI/IolB family HRD54_RS13550 PF01979 Amidohydrolase family HRD54_RS13555 PF03610 PTS system fructose IIA component HRD54_RS13555 PF03830 PTS system sorbose subfamily IIB component HRD54_RS13560 PF03613 PTS system mannose/fructose/sorbose family IID component HRD54_RS13565 PF03609 PTS system sorbose-specific iic component HRD54_RS13570 PF03830 PTS system sorbose subfamily IIB component HRD54_RS13575 PF01380 SIS domain HRD54_RS13580 PF08013 Tagatose 6 phosphate kinase HRD54_RS13585 PF00455 DeoR C terminal sensor domain HRD54_RS13585 PF08220 DeoR-like helix-turn-helix domain HRD54_RS13590 PF04055 Radical SAM superfamily HRD54_RS13590 PF13186 Iron-sulfur cluster-binding domain HRD54_RS13595 PF00884 Sulfatase HRD54_RS13605 PF01116 Fructose-bisphosphate aldolase class-II HRD54_RS13610 PF00294 pfkB family carbohydrate kinase HRD54_RS13615 PF01081 KDPG and KHG aldolase HRD54_RS13625 PF01266 FAD dependent oxidoreductase HRD54_RS13630 PF02567 Phenazine biosynthesis-like protein HRD54_RS13635 PF02040 Arsenical pump membrane protein HRD54_RS13640 PF01022 Bacterial regulatory protein, arsR family HRD54_RS13650 PF04229 GrpB protein HRD54_RS13670 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HRD54_RS13670 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HRD54_RS13680 PF00294 pfkB family carbohydrate kinase HRD54_RS13685 PF01406 tRNA synthetases class I (C) catalytic domain HRD54_RS13685 PF09190 DALR domain HRD54_RS13690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HRD54_RS13695 PF00149 Calcineurin-like phosphoesterase HRD54_RS13700 PF00731 AIR carboxylase HRD54_RS13705 PF02222 ATP-grasp domain HRD54_RS13705 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HRD54_RS13715 PF00924 Mechanosensitive ion channel HRD54_RS13725 PF00005 ABC transporter HRD54_RS13730 PF13472 GDSL-like Lipase/Acylhydrolase family HRD54_RS13735 PF00106 short chain dehydrogenase HRD54_RS13740 PF00085 Thioredoxin HRD54_RS13745 PF16200 C-terminal region of band_7 HRD54_RS13745 PF01145 SPFH domain / Band 7 family HRD54_RS13755 PF13411 MerR HTH family regulatory protein HRD54_RS13760 PF00403 Heavy-metal-associated domain HRD54_RS13770 PF01963 TraB family HRD54_RS13775 PF04073 Aminoacyl-tRNA editing domain HRD54_RS13780 PF00149 Calcineurin-like phosphoesterase HRD54_RS13780 PF02872 5'-nucleotidase, C-terminal domain HRD54_RS13785 PF02254 TrkA-N domain HRD54_RS13785 PF00999 Sodium/hydrogen exchanger family HRD54_RS13790 PF00294 pfkB family carbohydrate kinase HRD54_RS13795 PF02706 Chain length determinant protein HRD54_RS13800 PF00762 Ferrochelatase HRD54_RS13805 PF05191 Adenylate kinase, active site lid HRD54_RS13810 PF00183 Hsp90 protein HRD54_RS13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS13815 PF02222 ATP-grasp domain HRD54_RS13820 PF00892 EamA-like transporter family HRD54_RS13825 PF00294 pfkB family carbohydrate kinase HRD54_RS13830 PF08244 Glycosyl hydrolases family 32 C terminal HRD54_RS13830 PF00251 Glycosyl hydrolases family 32 N-terminal domain HRD54_RS13835 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS13835 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD54_RS13840 PF00072 Response regulator receiver domain HRD54_RS13840 PF00196 Bacterial regulatory proteins, luxR family HRD54_RS13865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS13865 PF03466 LysR substrate binding domain HRD54_RS13875 PF00696 Amino acid kinase family HRD54_RS13880 PF11392 Protein of unknown function (DUF2877) HRD54_RS13885 PF06545 Protein of unknown function (DUF1116) HRD54_RS13890 PF02629 CoA binding domain HRD54_RS13890 PF00549 CoA-ligase HRD54_RS13895 PF00857 Isochorismatase family HRD54_RS13900 PF05726 Pirin C-terminal cupin domain HRD54_RS13900 PF02678 Pirin HRD54_RS13905 PF03466 LysR substrate binding domain HRD54_RS13905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS13910 PF00939 Sodium:sulfate symporter transmembrane region HRD54_RS13940 PF13953 PapC C-terminal domain HRD54_RS13940 PF13954 PapC N-terminal domain HRD54_RS13940 PF00577 Outer membrane usher protein HRD54_RS13945 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS13945 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS13950 PF00419 Fimbrial protein HRD54_RS13970 PF00419 Fimbrial protein HRD54_RS13980 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS13980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS13985 PF00577 Outer membrane usher protein HRD54_RS13985 PF13954 PapC N-terminal domain HRD54_RS13985 PF13953 PapC C-terminal domain HRD54_RS13995 PF00419 Fimbrial protein HRD54_RS14000 PF01381 Helix-turn-helix HRD54_RS14005 PF02811 PHP domain HRD54_RS14010 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD54_RS14010 PF00367 phosphotransferase system, EIIB HRD54_RS14010 PF02378 Phosphotransferase system, EIIC HRD54_RS14015 PF03123 CAT RNA binding domain HRD54_RS14015 PF00874 PRD domain HRD54_RS14020 PF13673 Acetyltransferase (GNAT) domain HRD54_RS14025 PF02661 Fic/DOC family HRD54_RS14060 PF13411 MerR HTH family regulatory protein HRD54_RS14065 PF05052 MerE protein HRD54_RS14070 PF00563 EAL domain HRD54_RS14070 PF11809 Domain of unknown function (DUF3330) HRD54_RS14095 PF03616 Sodium/glutamate symporter HRD54_RS14115 PF02909 Tetracyclin repressor-like, C-terminal domain HRD54_RS14115 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS14120 PF07690 Major Facilitator Superfamily HRD54_RS14125 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS14170 PF13427 Domain of unknown function (DUF4111) HRD54_RS14170 PF01909 Nucleotidyltransferase domain HRD54_RS14175 PF00589 Phage integrase family HRD54_RS14175 PF13495 Phage integrase, N-terminal SAM-like domain HRD54_RS14180 PF00563 EAL domain HRD54_RS14180 PF11809 Domain of unknown function (DUF3330) HRD54_RS14185 PF00239 Resolvase, N terminal domain HRD54_RS14185 PF02796 Helix-turn-helix domain of resolvase HRD54_RS14190 PF13700 Domain of unknown function (DUF4158) HRD54_RS14190 PF01526 Tn3 transposase DDE domain HRD54_RS14200 PF13610 DDE domain HRD54_RS14215 PF07690 Major Facilitator Superfamily HRD54_RS14220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS14220 PF03466 LysR substrate binding domain HRD54_RS14235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRD54_RS14235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRD54_RS14235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRD54_RS14235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRD54_RS14240 PF00809 Pterin binding enzyme HRD54_RS14250 PF02332 Methane/Phenol/Toluene Hydroxylase HRD54_RS14265 PF13610 DDE domain HRD54_RS14275 PF01636 Phosphotransferase enzyme family HRD54_RS14280 PF02522 Aminoglycoside 3-N-acetyltransferase HRD54_RS14285 PF13610 DDE domain HRD54_RS14290 PF01636 Phosphotransferase enzyme family HRD54_RS14295 PF13610 DDE domain HRD54_RS14300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HRD54_RS14310 PF04986 Putative transposase HRD54_RS14310 PF14319 Transposase zinc-binding domain HRD54_RS14315 PF13427 Domain of unknown function (DUF4111) HRD54_RS14315 PF01909 Nucleotidyltransferase domain HRD54_RS14325 PF00186 Dihydrofolate reductase HRD54_RS14335 PF00239 Resolvase, N terminal domain HRD54_RS14335 PF02796 Helix-turn-helix domain of resolvase HRD54_RS14340 PF13700 Domain of unknown function (DUF4158) HRD54_RS14340 PF01526 Tn3 transposase DDE domain HRD54_RS14420 PF13693 Winged helix-turn-helix DNA-binding HRD54_RS14445 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HRD54_RS14445 PF11867 Domain of unknown function (DUF3387) HRD54_RS14445 PF18766 SWI2/SNF2 ATPase HRD54_RS14455 PF02384 N-6 DNA Methylase HRD54_RS14465 PF12167 Arm DNA-binding domain HRD54_RS14465 PF00589 Phage integrase family HRD54_RS14470 PF05188 MutS domain II HRD54_RS14470 PF05192 MutS domain III HRD54_RS14470 PF00488 MutS domain V HRD54_RS14470 PF05190 MutS family domain IV HRD54_RS14470 PF01624 MutS domain I HRD54_RS14475 PF00140 Sigma-70 factor, region 1.2 HRD54_RS14475 PF04542 Sigma-70 region 2 HRD54_RS14475 PF04545 Sigma-70, region 4 HRD54_RS14475 PF04539 Sigma-70 region 3 HRD54_RS14480 PF01551 Peptidase family M23 HRD54_RS14480 PF01476 LysM domain HRD54_RS14490 PF01975 Survival protein SurE HRD54_RS14495 PF01142 tRNA pseudouridine synthase D (TruD) HRD54_RS14500 PF02542 YgbB family HRD54_RS14505 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HRD54_RS14510 PF04977 Septum formation initiator HRD54_RS14520 PF00009 Elongation factor Tu GTP binding domain HRD54_RS14525 PF01507 Phosphoadenosine phosphosulfate reductase family HRD54_RS14530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD54_RS14530 PF14824 Sirohaem biosynthesis protein central HRD54_RS14530 PF10414 Sirohaem synthase dimerisation region HRD54_RS14535 PF01507 Phosphoadenosine phosphosulfate reductase family HRD54_RS14540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HRD54_RS14540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HRD54_RS14545 PF00258 Flavodoxin HRD54_RS14545 PF00667 FAD binding domain HRD54_RS14545 PF00175 Oxidoreductase NAD-binding domain HRD54_RS14550 PF01242 6-pyruvoyl tetrahydropterin synthase HRD54_RS14555 PF04055 Radical SAM superfamily HRD54_RS14560 PF00324 Amino acid permease HRD54_RS14565 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD54_RS14580 PF03372 Endonuclease/Exonuclease/phosphatase family HRD54_RS14615 PF09383 NIL domain HRD54_RS14615 PF00005 ABC transporter HRD54_RS14620 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS14625 PF03180 NLPA lipoprotein HRD54_RS14635 PF01980 tRNA-methyltransferase O HRD54_RS14635 PF18389 TrmO C-terminal domain HRD54_RS14640 PF04073 Aminoacyl-tRNA editing domain HRD54_RS14640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRD54_RS14640 PF03129 Anticodon binding domain HRD54_RS14645 PF04170 NlpE N-terminal domain HRD54_RS14645 PF17185 NlpE C-terminal OB domain HRD54_RS14650 PF07073 Modulator of Rho-dependent transcription termination (ROF) HRD54_RS14655 PF09179 TilS substrate binding domain HRD54_RS14655 PF11734 TilS substrate C-terminal domain HRD54_RS14655 PF01171 PP-loop family HRD54_RS14665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HRD54_RS14670 PF14579 Helix-hairpin-helix motif HRD54_RS14670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HRD54_RS14670 PF07733 Bacterial DNA polymerase III alpha NTPase domain HRD54_RS14670 PF01336 OB-fold nucleic acid binding domain HRD54_RS14670 PF02811 PHP domain HRD54_RS14675 PF01351 Ribonuclease HII HRD54_RS14680 PF02684 Lipid-A-disaccharide synthetase HRD54_RS14685 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HRD54_RS14685 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS14690 PF07977 FabA-like domain HRD54_RS14695 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HRD54_RS14695 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS14700 PF03938 Outer membrane protein (OmpH-like) HRD54_RS14705 PF01103 Surface antigen HRD54_RS14705 PF07244 Surface antigen variable number repeat HRD54_RS14710 PF02163 Peptidase family M50 HRD54_RS14710 PF17820 PDZ domain HRD54_RS14720 PF01255 Putative undecaprenyl diphosphate synthase HRD54_RS14725 PF13288 DXP reductoisomerase C-terminal domain HRD54_RS14725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HRD54_RS14725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HRD54_RS14730 PF01765 Ribosome recycling factor HRD54_RS14735 PF00696 Amino acid kinase family HRD54_RS14740 PF00889 Elongation factor TS HRD54_RS14745 PF00318 Ribosomal protein S2 HRD54_RS14750 PF00557 Metallopeptidase family M24 HRD54_RS14755 PF08335 GlnD PII-uridylyltransferase HRD54_RS14755 PF01842 ACT domain HRD54_RS14755 PF01966 HD domain HRD54_RS14760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HRD54_RS14760 PF14602 Hexapeptide repeat of succinyl-transferase HRD54_RS14765 PF11944 Protein of unknown function (DUF3461) HRD54_RS14770 PF00258 Flavodoxin HRD54_RS14780 PF02378 Phosphotransferase system, EIIC HRD54_RS14780 PF00367 phosphotransferase system, EIIB HRD54_RS14785 PF04287 tRNA pseudouridine synthase C HRD54_RS14785 PF00849 RNA pseudouridylate synthase HRD54_RS14790 PF04287 tRNA pseudouridine synthase C HRD54_RS14795 PF07348 Syd protein (SUKH-2) HRD54_RS14800 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HRD54_RS14800 PF14489 QueF-like protein HRD54_RS14805 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HRD54_RS14805 PF03641 Possible lysine decarboxylase HRD54_RS14805 PF11892 Domain of unknown function (DUF3412) HRD54_RS14810 PF01367 5'-3' exonuclease, C-terminal SAM fold HRD54_RS14810 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HRD54_RS14815 PF01728 FtsJ-like methyltransferase HRD54_RS14815 PF18125 RlmM ferredoxin-like domain HRD54_RS14820 PF04241 Protein of unknown function (DUF423) HRD54_RS14825 PF03466 LysR substrate binding domain HRD54_RS14825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS14830 PF00266 Aminotransferase class-V HRD54_RS14835 PF02657 Fe-S metabolism associated domain HRD54_RS14840 PF00899 ThiF family HRD54_RS14845 PF03562 MltA specific insert domain HRD54_RS14845 PF06725 3D domain HRD54_RS14865 PF11741 AMIN domain HRD54_RS14865 PF01520 N-acetylmuramoyl-L-alanine amidase HRD54_RS14870 PF00583 Acetyltransferase (GNAT) family HRD54_RS14870 PF00696 Amino acid kinase family HRD54_RS14875 PF13538 UvrD-like helicase C-terminal domain HRD54_RS14880 PF12705 PD-(D/E)XK nuclease superfamily HRD54_RS14880 PF13361 UvrD-like helicase C-terminal domain HRD54_RS14880 PF00580 UvrD/REP helicase N-terminal domain HRD54_RS14885 PF16187 Middle or third domain of peptidase_M16 HRD54_RS14885 PF05193 Peptidase M16 inactive domain HRD54_RS14885 PF00675 Insulinase (Peptidase family M16) HRD54_RS14890 PF17946 RecC C-terminal domain HRD54_RS14920 PF01790 Prolipoprotein diacylglyceryl transferase HRD54_RS14925 PF02896 PEP-utilising enzyme, TIM barrel domain HRD54_RS14925 PF00391 PEP-utilising enzyme, mobile domain HRD54_RS14925 PF05524 PEP-utilising enzyme, N-terminal HRD54_RS14925 PF01590 GAF domain HRD54_RS14930 PF00293 NUDIX domain HRD54_RS14940 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS14945 PF00005 ABC transporter HRD54_RS14950 PF03104 DNA polymerase family B, exonuclease domain HRD54_RS14950 PF00136 DNA polymerase family B HRD54_RS14955 PF18339 RapA N-terminal Tudor like domain 1 HRD54_RS14955 PF00176 SNF2 family N-terminal domain HRD54_RS14955 PF12137 RNA polymerase recycling family C-terminal HRD54_RS14955 PF00271 Helicase conserved C-terminal domain HRD54_RS14955 PF18337 RapA N-terminal Tudor like domain HRD54_RS14960 PF00849 RNA pseudouridylate synthase HRD54_RS14965 PF00226 DnaJ domain HRD54_RS14965 PF05099 Tellurite resistance protein TerB HRD54_RS14970 PF04453 LPS transport system D HRD54_RS14970 PF03968 OstA-like protein HRD54_RS14975 PF09312 SurA N-terminal domain HRD54_RS14980 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HRD54_RS14985 PF00398 Ribosomal RNA adenine dimethylase HRD54_RS14990 PF04379 ApaG domain HRD54_RS14995 PF00149 Calcineurin-like phosphoesterase HRD54_RS15000 PF00186 Dihydrofolate reductase HRD54_RS15010 PF00082 Subtilase family HRD54_RS15010 PF03797 Autotransporter beta-domain HRD54_RS15010 PF12951 Passenger-associated-transport-repeat HRD54_RS15015 PF07731 Multicopper oxidase HRD54_RS15015 PF07732 Multicopper oxidase HRD54_RS15020 PF01553 Acyltransferase HRD54_RS15025 PF00521 DNA gyrase/topoisomerase IV, subunit A HRD54_RS15025 PF03989 DNA gyrase C-terminal domain, beta-propeller HRD54_RS15030 PF01751 Toprim domain HRD54_RS15030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS15030 PF00204 DNA gyrase B HRD54_RS15030 PF00986 DNA gyrase B subunit, carboxyl terminus HRD54_RS15035 PF05728 Uncharacterised protein family (UPF0227) HRD54_RS15040 PF00149 Calcineurin-like phosphoesterase HRD54_RS15045 PF00293 NUDIX domain HRD54_RS15050 PF02321 Outer membrane efflux protein HRD54_RS15055 PF06693 Protein of unknown function (DUF1190) HRD54_RS15060 PF03738 Glutathionylspermidine synthase preATP-grasp HRD54_RS15065 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HRD54_RS15070 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HRD54_RS15075 PF04380 Membrane fusogenic activity HRD54_RS15080 PF00294 pfkB family carbohydrate kinase HRD54_RS15080 PF01467 Cytidylyltransferase-like HRD54_RS15085 PF03710 Glutamate-ammonia ligase adenylyltransferase HRD54_RS15085 PF08335 GlnD PII-uridylyltransferase HRD54_RS15090 PF01928 CYTH domain HRD54_RS15095 PF08239 Bacterial SH3 domain HRD54_RS15100 PF01743 Poly A polymerase head domain HRD54_RS15100 PF01966 HD domain HRD54_RS15100 PF12627 Probable RNA and SrmB- binding site of polymerase A HRD54_RS15105 PF02152 Dihydroneopterin aldolase HRD54_RS15110 PF02660 Glycerol-3-phosphate acyltransferase HRD54_RS15130 PF01474 Class-II DAHP synthetase family HRD54_RS15135 PF00814 Glycoprotease family HRD54_RS15140 PF01165 Ribosomal protein S21 HRD54_RS15145 PF01807 CHC2 zinc finger HRD54_RS15145 PF08278 DNA primase DnaG DnaB-binding HRD54_RS15145 PF10410 DnaB-helicase binding domain of primase HRD54_RS15145 PF08275 DNA primase catalytic core, N-terminal domain HRD54_RS15150 PF04542 Sigma-70 region 2 HRD54_RS15150 PF04546 Sigma-70, non-essential region HRD54_RS15150 PF03979 Sigma-70 factor, region 1.1 HRD54_RS15150 PF04545 Sigma-70, region 4 HRD54_RS15150 PF04539 Sigma-70 region 3 HRD54_RS15150 PF00140 Sigma-70 factor, region 1.2 HRD54_RS15165 PF01062 Bestrophin, RFP-TM, chloride channel HRD54_RS15175 PF02322 Cytochrome bd terminal oxidase subunit II HRD54_RS15180 PF01654 Cytochrome bd terminal oxidase subunit I HRD54_RS15185 PF00384 Molybdopterin oxidoreductase HRD54_RS15190 PF03466 LysR substrate binding domain HRD54_RS15190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS15195 PF02203 Tar ligand binding domain homologue HRD54_RS15195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS15195 PF00672 HAMP domain HRD54_RS15200 PF00672 HAMP domain HRD54_RS15200 PF02203 Tar ligand binding domain homologue HRD54_RS15200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS15210 PF02342 TerD domain HRD54_RS15215 PF02342 TerD domain HRD54_RS15220 PF03741 Integral membrane protein TerC family HRD54_RS15225 PF05099 Tellurite resistance protein TerB HRD54_RS15230 PF02342 TerD domain HRD54_RS15235 PF02342 TerD domain HRD54_RS15250 PF11202 Phosphoribosyl transferase (PRTase) HRD54_RS15250 PF15608 PELOTA RNA binding domain HRD54_RS15285 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS15285 PF02909 Tetracyclin repressor-like, C-terminal domain HRD54_RS15315 PF02733 Dak1 domain HRD54_RS15320 PF02734 DAK2 domain HRD54_RS15325 PF00391 PEP-utilising enzyme, mobile domain HRD54_RS15325 PF00381 PTS HPr component phosphorylation site HRD54_RS15325 PF05524 PEP-utilising enzyme, N-terminal HRD54_RS15325 PF03610 PTS system fructose IIA component HRD54_RS15330 PF02954 Bacterial regulatory protein, Fis family HRD54_RS15330 PF14532 Sigma-54 interaction domain HRD54_RS15330 PF00072 Response regulator receiver domain HRD54_RS15335 PF02743 Cache domain HRD54_RS15335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS15335 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS15345 PF07690 Major Facilitator Superfamily HRD54_RS15350 PF00224 Pyruvate kinase, barrel domain HRD54_RS15350 PF02887 Pyruvate kinase, alpha/beta domain HRD54_RS15355 PF01258 Prokaryotic dksA/traR C4-type zinc finger HRD54_RS15360 PF00282 Pyridoxal-dependent decarboxylase conserved domain HRD54_RS15365 PF03600 Citrate transporter HRD54_RS15370 PF01048 Phosphorylase superfamily HRD54_RS15375 PF01676 Metalloenzyme superfamily HRD54_RS15380 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HRD54_RS15380 PF02885 Glycosyl transferase family, helical bundle domain HRD54_RS15380 PF00591 Glycosyl transferase family, a/b domain HRD54_RS15385 PF01791 DeoC/LacD family aldolase HRD54_RS15390 PF07670 Nucleoside recognition HRD54_RS15390 PF07662 Na+ dependent nucleoside transporter C-terminus HRD54_RS15390 PF01773 Na+ dependent nucleoside transporter N-terminus HRD54_RS15395 PF01026 TatD related DNase HRD54_RS15400 PF01734 Patatin-like phospholipase HRD54_RS15410 PF00009 Elongation factor Tu GTP binding domain HRD54_RS15410 PF03144 Elongation factor Tu domain 2 HRD54_RS15410 PF16658 Class II release factor RF3, C-terminal domain HRD54_RS15425 PF00583 Acetyltransferase (GNAT) family HRD54_RS15435 PF08468 Methyltransferase small domain N-terminal HRD54_RS15435 PF05175 Methyltransferase small domain HRD54_RS15450 PF02690 Na+/Pi-cotransporter HRD54_RS15455 PF00245 Alkaline phosphatase HRD54_RS15460 PF07282 Putative transposase DNA-binding domain HRD54_RS15460 PF12323 Helix-turn-helix domain HRD54_RS15460 PF01385 Probable transposase HRD54_RS15465 PF01797 Transposase IS200 like HRD54_RS15470 PF11806 Domain of unknown function (DUF3327) HRD54_RS15470 PF00756 Putative esterase HRD54_RS15480 PF01381 Helix-turn-helix HRD54_RS15480 PF13521 AAA domain HRD54_RS15485 PF18073 Rubredoxin metal binding domain HRD54_RS15490 PF18429 Domain of unknown function (DUF5609) HRD54_RS15495 PF10144 Bacterial virulence factor haemolysin HRD54_RS15500 PF11230 Protein of unknown function (DUF3029) HRD54_RS15505 PF04055 Radical SAM superfamily HRD54_RS15515 PF00005 ABC transporter HRD54_RS15520 PF00005 ABC transporter HRD54_RS15525 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD54_RS15525 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS15530 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS15535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS15540 PF00535 Glycosyl transferase family 2 HRD54_RS15545 PF01750 Hydrogenase maturation protease HRD54_RS15550 PF07450 Formate hydrogenlyase maturation protein HycH HRD54_RS15555 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HRD54_RS15560 PF12838 4Fe-4S dicluster domain HRD54_RS15565 PF00374 Nickel-dependent hydrogenase HRD54_RS15565 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HRD54_RS15565 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HRD54_RS15570 PF00361 Proton-conducting membrane transporter HRD54_RS15570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HRD54_RS15575 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HRD54_RS15580 PF00361 Proton-conducting membrane transporter HRD54_RS15580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HRD54_RS15585 PF00146 NADH dehydrogenase HRD54_RS15590 PF00361 Proton-conducting membrane transporter HRD54_RS15595 PF00037 4Fe-4S binding domain HRD54_RS15595 PF12798 4Fe-4S binding domain HRD54_RS15600 PF02502 Ribose/Galactose Isomerase HRD54_RS15605 PF09285 Elongation factor P, C-terminal HRD54_RS15605 PF08207 Elongation factor P (EF-P) KOW-like domain HRD54_RS15605 PF01132 Elongation factor P (EF-P) OB domain HRD54_RS15610 PF04055 Radical SAM superfamily HRD54_RS15620 PF13954 PapC N-terminal domain HRD54_RS15620 PF00577 Outer membrane usher protein HRD54_RS15620 PF13953 PapC C-terminal domain HRD54_RS15625 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS15625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS15630 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS15630 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS15645 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS15645 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS15655 PF13460 NAD(P)H-binding HRD54_RS15660 PF13698 Domain of unknown function (DUF4156) HRD54_RS15665 PF12323 Helix-turn-helix domain HRD54_RS15665 PF07282 Putative transposase DNA-binding domain HRD54_RS15665 PF01385 Probable transposase HRD54_RS15675 PF00118 TCP-1/cpn60 chaperonin family HRD54_RS15680 PF00166 Chaperonin 10 Kd subunit HRD54_RS15685 PF04186 FxsA cytoplasmic membrane protein HRD54_RS15690 PF10415 Fumarase C C-terminus HRD54_RS15690 PF00206 Lyase HRD54_RS15695 PF03605 Anaerobic c4-dicarboxylate membrane transporter HRD54_RS15715 PF04536 TPM domain HRD54_RS15720 PF04011 LemA family HRD54_RS15735 PF05491 RuvB C-terminal winged helix domain HRD54_RS15735 PF17864 RuvB AAA lid domain HRD54_RS15735 PF05496 Holliday junction DNA helicase RuvB P-loop domain HRD54_RS15740 PF00083 Sugar (and other) transporter HRD54_RS15750 PF01494 FAD binding domain HRD54_RS15755 PF01012 Electron transfer flavoprotein domain HRD54_RS15755 PF00766 Electron transfer flavoprotein FAD-binding domain HRD54_RS15760 PF01012 Electron transfer flavoprotein domain HRD54_RS15765 PF02028 BCCT, betaine/carnitine/choline family transporter HRD54_RS15770 PF02770 Acyl-CoA dehydrogenase, middle domain HRD54_RS15770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HRD54_RS15770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HRD54_RS15775 PF02515 CoA-transferase family III HRD54_RS15780 PF13193 AMP-binding enzyme C-terminal domain HRD54_RS15780 PF00501 AMP-binding enzyme HRD54_RS15785 PF00378 Enoyl-CoA hydratase/isomerase HRD54_RS15790 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS15795 PF07180 CaiF/GrlA transcriptional regulator HRD54_RS15800 PF00923 Transaldolase/Fructose-6-phosphate aldolase HRD54_RS15805 PF18416 N-acetylglucosamine binding protein domain 2 HRD54_RS15805 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HRD54_RS15810 PF02631 RecX family HRD54_RS15830 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HRD54_RS15835 PF03062 MBOAT, membrane-bound O-acyltransferase family HRD54_RS15855 PF02447 GntP family permease HRD54_RS15860 PF01202 Shikimate kinase HRD54_RS15865 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD54_RS15865 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS15880 PF00005 ABC transporter HRD54_RS15885 PF13649 Methyltransferase domain HRD54_RS15890 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HRD54_RS15890 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HRD54_RS15915 PF07720 Tetratricopeptide repeat HRD54_RS15920 PF01312 FlhB HrpN YscU SpaS Family HRD54_RS15925 PF01311 Bacterial export proteins, family 1 HRD54_RS15930 PF01313 Bacterial export proteins, family 3 HRD54_RS15935 PF00813 FliP family HRD54_RS15955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD54_RS15955 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRD54_RS15955 PF18269 T3SS EscN ATPase C-terminal domain HRD54_RS15965 PF00771 FHIPEP family HRD54_RS15970 PF07201 HrpJ-like domain HRD54_RS15975 PF00263 Bacterial type II and III secretion system protein HRD54_RS15975 PF03958 Bacterial type II/III secretion system short domain HRD54_RS15980 PF12833 Helix-turn-helix domain HRD54_RS15990 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HRD54_RS16000 PF01514 Secretory protein of YscJ/FliF family HRD54_RS16020 PF09278 MerR, DNA binding HRD54_RS16020 PF00376 MerR family regulatory protein HRD54_RS16035 PF00873 AcrB/AcrD/AcrF family HRD54_RS16045 PF00893 Small Multidrug Resistance protein HRD54_RS16050 PF00893 Small Multidrug Resistance protein HRD54_RS16070 PF00893 Small Multidrug Resistance protein HRD54_RS16075 PF00893 Small Multidrug Resistance protein HRD54_RS16085 PF06130 Phosphate propanoyltransferase HRD54_RS16090 PF00936 BMC domain HRD54_RS16095 PF13187 4Fe-4S dicluster domain HRD54_RS16095 PF04055 Radical SAM superfamily HRD54_RS16100 PF01228 Glycine radical HRD54_RS16100 PF02901 Pyruvate formate lyase-like HRD54_RS16105 PF00465 Iron-containing alcohol dehydrogenase HRD54_RS16110 PF03319 Ethanolamine utilisation protein EutN/carboxysome HRD54_RS16115 PF00171 Aldehyde dehydrogenase family HRD54_RS16115 PF00465 Iron-containing alcohol dehydrogenase HRD54_RS16120 PF00936 BMC domain HRD54_RS16125 PF00936 BMC domain HRD54_RS16130 PF00936 BMC domain HRD54_RS16150 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD54_RS16155 PF00892 EamA-like transporter family HRD54_RS16160 PF00419 Fimbrial protein HRD54_RS16165 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD54_RS16165 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD54_RS16170 PF13953 PapC C-terminal domain HRD54_RS16170 PF13954 PapC N-terminal domain HRD54_RS16170 PF00577 Outer membrane usher protein HRD54_RS16175 PF00419 Fimbrial protein HRD54_RS16180 PF09222 Fimbrial adhesin F17-AG, lectin domain HRD54_RS16180 PF00419 Fimbrial protein HRD54_RS16185 PF01381 Helix-turn-helix HRD54_RS16190 PF13416 Bacterial extracellular solute-binding protein HRD54_RS16195 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS16200 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS16205 PF00005 ABC transporter HRD54_RS16205 PF08402 TOBE domain HRD54_RS16220 PF01207 Dihydrouridine synthase (Dus) HRD54_RS16225 PF08240 Alcohol dehydrogenase GroES-like domain HRD54_RS16225 PF00107 Zinc-binding dehydrogenase HRD54_RS16230 PF03796 DnaB-like helicase C terminal domain HRD54_RS16230 PF00772 DnaB-like helicase N terminal domain HRD54_RS16235 PF00842 Alanine racemase, C-terminal domain HRD54_RS16235 PF01168 Alanine racemase, N-terminal domain HRD54_RS16240 PF00155 Aminotransferase class I and II HRD54_RS16245 PF03313 Serine dehydratase alpha chain HRD54_RS16255 PF17760 UvrA interaction domain HRD54_RS16255 PF00005 ABC transporter HRD54_RS16255 PF17755 UvrA DNA-binding domain HRD54_RS16260 PF00436 Single-strand binding protein family HRD54_RS16265 PF01475 Ferric uptake regulator family HRD54_RS16270 PF01726 LexA DNA binding domain HRD54_RS16270 PF00717 Peptidase S24-like HRD54_RS16275 PF01219 Prokaryotic diacylglycerol kinase HRD54_RS16280 PF01553 Acyltransferase HRD54_RS16285 PF01040 UbiA prenyltransferase family HRD54_RS16290 PF04345 Chorismate lyase HRD54_RS16295 PF00342 Phosphoglucose isomerase HRD54_RS16300 PF01842 ACT domain HRD54_RS16300 PF00696 Amino acid kinase family HRD54_RS16315 PF02607 B12 binding domain HRD54_RS16315 PF02310 B12 binding domain HRD54_RS16315 PF02965 Vitamin B12 dependent methionine synthase, activation domain HRD54_RS16315 PF02574 Homocysteine S-methyltransferase HRD54_RS16315 PF00809 Pterin binding enzyme HRD54_RS16320 PF01614 Bacterial transcriptional regulator HRD54_RS16320 PF09339 IclR helix-turn-helix domain HRD54_RS16325 PF00920 Dehydratase family HRD54_RS16330 PF01081 KDPG and KHG aldolase HRD54_RS16335 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HRD54_RS16340 PF00463 Isocitrate lyase family HRD54_RS16345 PF01274 Malate synthase HRD54_RS16350 PF04204 Homoserine O-succinyltransferase HRD54_RS16355 PF00465 Iron-containing alcohol dehydrogenase HRD54_RS16360 PF00293 NUDIX domain HRD54_RS16390 PF01808 AICARFT/IMPCHase bienzyme HRD54_RS16390 PF02142 MGS-like domain HRD54_RS16395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HRD54_RS16395 PF02843 Phosphoribosylglycinamide synthetase, C domain HRD54_RS16395 PF02844 Phosphoribosylglycinamide synthetase, N domain HRD54_RS16400 PF07356 Protein of unknown function (DUF1481) HRD54_RS16405 PF00216 Bacterial DNA-binding protein HRD54_RS16410 PF04222 Protein of unknown function (DUF416) HRD54_RS16415 PF04493 Endonuclease V HRD54_RS16420 PF01208 Uroporphyrinogen decarboxylase (URO-D) HRD54_RS16425 PF09297 NADH pyrophosphatase zinc ribbon domain HRD54_RS16425 PF00293 NUDIX domain HRD54_RS16435 PF01964 Radical SAM ThiC family HRD54_RS16435 PF13667 ThiC-associated domain HRD54_RS16440 PF02581 Thiamine monophosphate synthase HRD54_RS16445 PF00899 ThiF family HRD54_RS16450 PF02597 ThiS family HRD54_RS16455 PF05690 Thiazole biosynthesis protein ThiG HRD54_RS16460 PF06968 Biotin and Thiamin Synthesis associated domain HRD54_RS16460 PF04055 Radical SAM superfamily HRD54_RS16465 PF04754 Putative transposase, YhgA-like HRD54_RS16470 PF05000 RNA polymerase Rpb1, domain 4 HRD54_RS16470 PF04998 RNA polymerase Rpb1, domain 5 HRD54_RS16470 PF04997 RNA polymerase Rpb1, domain 1 HRD54_RS16470 PF04983 RNA polymerase Rpb1, domain 3 HRD54_RS16470 PF00623 RNA polymerase Rpb1, domain 2 HRD54_RS16475 PF04561 RNA polymerase Rpb2, domain 2 HRD54_RS16475 PF00562 RNA polymerase Rpb2, domain 6 HRD54_RS16475 PF04565 RNA polymerase Rpb2, domain 3 HRD54_RS16475 PF04560 RNA polymerase Rpb2, domain 7 HRD54_RS16475 PF10385 RNA polymerase beta subunit external 1 domain HRD54_RS16475 PF04563 RNA polymerase beta subunit HRD54_RS16480 PF00542 Ribosomal protein L7/L12 C-terminal domain HRD54_RS16480 PF16320 Ribosomal protein L7/L12 dimerisation domain HRD54_RS16485 PF00466 Ribosomal protein L10 HRD54_RS16490 PF00687 Ribosomal protein L1p/L10e family HRD54_RS16495 PF00298 Ribosomal protein L11, RNA binding domain HRD54_RS16495 PF03946 Ribosomal protein L11, N-terminal domain HRD54_RS16500 PF00467 KOW motif HRD54_RS16500 PF02357 Transcription termination factor nusG HRD54_RS16505 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HRD54_RS16510 PF03143 Elongation factor Tu C-terminal domain HRD54_RS16510 PF03144 Elongation factor Tu domain 2 HRD54_RS16510 PF00009 Elongation factor Tu GTP binding domain HRD54_RS16515 PF00009 Elongation factor Tu GTP binding domain HRD54_RS16515 PF03144 Elongation factor Tu domain 2 HRD54_RS16515 PF00679 Elongation factor G C-terminus HRD54_RS16515 PF14492 Elongation Factor G, domain II HRD54_RS16515 PF03764 Elongation factor G, domain IV HRD54_RS16520 PF00177 Ribosomal protein S7p/S5e HRD54_RS16525 PF00164 Ribosomal protein S12/S23 HRD54_RS16530 PF04077 DsrH like protein HRD54_RS16535 PF02635 DsrE/DsrF-like family HRD54_RS16540 PF02635 DsrE/DsrF-like family HRD54_RS16545 PF08348 YheO-like PAS domain HRD54_RS16545 PF13309 HTH domain HRD54_RS16555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HRD54_RS16555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD54_RS16560 PF04102 SlyX HRD54_RS16565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD54_RS16570 PF09526 Probable metal-binding protein (DUF2387) HRD54_RS16575 PF00999 Sodium/hydrogen exchanger family HRD54_RS16575 PF02254 TrkA-N domain HRD54_RS16580 PF02525 Flavodoxin-like fold HRD54_RS16585 PF12848 ABC transporter HRD54_RS16585 PF00005 ABC transporter HRD54_RS16590 PF02203 Tar ligand binding domain homologue HRD54_RS16590 PF00672 HAMP domain HRD54_RS16590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS16595 PF02203 Tar ligand binding domain homologue HRD54_RS16595 PF00672 HAMP domain HRD54_RS16595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS16600 PF08447 PAS fold HRD54_RS16600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS16605 PF01380 SIS domain HRD54_RS16605 PF01418 Helix-turn-helix domain, rpiR family HRD54_RS16615 PF00561 alpha/beta hydrolase fold HRD54_RS16625 PF00485 Phosphoribulokinase / Uridine kinase family HRD54_RS16630 PF02566 OsmC-like protein HRD54_RS16635 PF13545 Crp-like helix-turn-helix domain HRD54_RS16635 PF00027 Cyclic nucleotide-binding domain HRD54_RS16640 PF00202 Aminotransferase class-III HRD54_RS16645 PF00117 Glutamine amidotransferase class-I HRD54_RS16650 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HRD54_RS16655 PF01926 50S ribosome-binding GTPase HRD54_RS16660 PF01327 Polypeptide deformylase HRD54_RS16665 PF00476 DNA polymerase family A HRD54_RS16665 PF01367 5'-3' exonuclease, C-terminal SAM fold HRD54_RS16665 PF01612 3'-5' exonuclease HRD54_RS16665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HRD54_RS16675 PF01323 DSBA-like thioredoxin domain HRD54_RS16680 PF01636 Phosphotransferase enzyme family HRD54_RS16685 PF06288 Protein of unknown function (DUF1040) HRD54_RS16690 PF12804 MobA-like NTP transferase domain HRD54_RS16695 PF03205 Molybdopterin guanine dinucleotide synthesis protein B HRD54_RS16705 PF01266 FAD dependent oxidoreductase HRD54_RS16710 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD54_RS16710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRD54_RS16715 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HRD54_RS16725 PF03631 Virulence factor BrkB HRD54_RS16730 PF01361 Tautomerase enzyme HRD54_RS16735 PF05193 Peptidase M16 inactive domain HRD54_RS16735 PF00675 Insulinase (Peptidase family M16) HRD54_RS16740 PF00990 Diguanylate cyclase, GGDEF domain HRD54_RS16740 PF00672 HAMP domain HRD54_RS16740 PF00563 EAL domain HRD54_RS16740 PF17154 Gammaproteobacterial periplasmic sensor domain HRD54_RS16745 PF04829 Pre-toxin domain with VENN motif HRD54_RS16745 PF15526 Novel toxin 21 HRD54_RS16745 PF05860 haemagglutination activity domain HRD54_RS16745 PF05594 Haemagluttinin repeat HRD54_RS16745 PF13332 Hemagglutinin repeat HRD54_RS16750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD54_RS16750 PF00005 ABC transporter HRD54_RS16755 PF00005 ABC transporter HRD54_RS16755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD54_RS16760 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS16760 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD54_RS16765 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS16770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS16790 PF07119 Protein of unknown function (DUF1375) HRD54_RS16795 PF06826 Predicted Permease Membrane Region HRD54_RS16795 PF02080 TrkA-C domain HRD54_RS16800 PF00155 Aminotransferase class I and II HRD54_RS16805 PF03352 Methyladenine glycosylase HRD54_RS16810 PF02091 Glycyl-tRNA synthetase alpha subunit HRD54_RS16815 PF05746 DALR anticodon binding domain HRD54_RS16815 PF02092 Glycyl-tRNA synthetase beta subunit HRD54_RS16830 PF07676 WD40-like Beta Propeller Repeat HRD54_RS16830 PF12566 Protein of unknown function (DUF3748) HRD54_RS16835 PF03458 UPF0126 domain HRD54_RS16840 PF00625 Guanylate kinase HRD54_RS16845 PF01192 RNA polymerase Rpb6 HRD54_RS16850 PF02824 TGS domain HRD54_RS16850 PF04607 Region found in RelA / SpoT proteins HRD54_RS16850 PF13291 ACT domain HRD54_RS16855 PF00588 SpoU rRNA Methylase family HRD54_RS16855 PF12105 SpoU, rRNA methylase, C-terminal HRD54_RS16860 PF00270 DEAD/DEAH box helicase HRD54_RS16860 PF00271 Helicase conserved C-terminal domain HRD54_RS16860 PF17191 RecG wedge domain HRD54_RS16865 PF03616 Sodium/glutamate symporter HRD54_RS16870 PF00860 Permease family HRD54_RS16875 PF05170 AsmA family HRD54_RS16885 PF00849 RNA pseudouridylate synthase HRD54_RS16885 PF01479 S4 domain HRD54_RS16890 PF09500 Putative thioesterase (yiiD_Cterm) HRD54_RS16890 PF00583 Acetyltransferase (GNAT) family HRD54_RS16895 PF02580 D-Tyr-tRNA(Tyr) deacylase HRD54_RS16900 PF13419 Haloacid dehalogenase-like hydrolase HRD54_RS16915 PF01850 PIN domain HRD54_RS16920 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HRD54_RS16945 PF05638 Type VI secretion system effector, Hcp HRD54_RS16970 PF00120 Glutamine synthetase, catalytic domain HRD54_RS16970 PF03951 Glutamine synthetase, beta-Grasp domain HRD54_RS16975 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS16975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS16980 PF00158 Sigma-54 interaction domain HRD54_RS16980 PF02954 Bacterial regulatory protein, Fis family HRD54_RS16980 PF00072 Response regulator receiver domain HRD54_RS16985 PF06969 HemN C-terminal domain HRD54_RS16985 PF04055 Radical SAM superfamily HRD54_RS16990 PF05643 Putative bacterial lipoprotein (DUF799) HRD54_RS17000 PF03783 Curli production assembly/transport component CsgG HRD54_RS17005 PF00575 S1 RNA binding domain HRD54_RS17005 PF16921 Tex protein YqgF-like domain HRD54_RS17005 PF17674 HHH domain HRD54_RS17005 PF09371 Tex-like protein N-terminal domain HRD54_RS17010 PF03449 Transcription elongation factor, N-terminal HRD54_RS17010 PF01272 Transcription elongation factor, GreA/GreB, C-term HRD54_RS17015 PF00072 Response regulator receiver domain HRD54_RS17015 PF00486 Transcriptional regulatory protein, C terminal HRD54_RS17020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD54_RS17020 PF00672 HAMP domain HRD54_RS17020 PF00512 His Kinase A (phospho-acceptor) domain HRD54_RS17025 PF12849 PBP superfamily domain HRD54_RS17030 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS17035 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS17040 PF00005 ABC transporter HRD54_RS17045 PF01895 PhoU domain HRD54_RS17050 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD54_RS17060 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS17085 PF00005 ABC transporter HRD54_RS17100 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD54_RS17100 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD54_RS17105 PF08669 Glycine cleavage T-protein C-terminal barrel domain HRD54_RS17105 PF01571 Aminomethyltransferase folate-binding domain HRD54_RS17110 PF00550 Phosphopantetheine attachment site HRD54_RS17115 PF07977 FabA-like domain HRD54_RS17125 PF01648 4'-phosphopantetheinyl transferase superfamily HRD54_RS17130 PF14436 Bacterial EndoU nuclease HRD54_RS17130 PF13332 Hemagglutinin repeat HRD54_RS17130 PF04829 Pre-toxin domain with VENN motif HRD54_RS17130 PF05594 Haemagluttinin repeat HRD54_RS17130 PF05860 haemagglutination activity domain HRD54_RS17135 PF00860 Permease family HRD54_RS17140 PF13302 Acetyltransferase (GNAT) domain HRD54_RS17150 PF04220 Der GTPase activator (YihI) HRD54_RS17160 PF04023 FeoA domain HRD54_RS17165 PF17910 FeoB cytosolic helical domain HRD54_RS17165 PF07670 Nucleoside recognition HRD54_RS17165 PF02421 Ferrous iron transport protein B HRD54_RS17165 PF07664 Ferrous iron transport protein B C terminus HRD54_RS17170 PF09012 FeoC like transcriptional regulator HRD54_RS17180 PF00561 alpha/beta hydrolase fold HRD54_RS17185 PF00156 Phosphoribosyl transferase domain HRD54_RS17190 PF01106 NifU-like domain HRD54_RS17190 PF01521 Iron-sulphur cluster biosynthesis HRD54_RS17195 PF00581 Rhodanese-like domain HRD54_RS17200 PF01694 Rhomboid family HRD54_RS17200 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HRD54_RS17205 PF00455 DeoR C terminal sensor domain HRD54_RS17205 PF08220 DeoR-like helix-turn-helix domain HRD54_RS17210 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HRD54_RS17210 PF01266 FAD dependent oxidoreductase HRD54_RS17215 PF04343 Protein of unknown function, DUF488 HRD54_RS17220 PF02219 Methylenetetrahydrofolate reductase HRD54_RS17230 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS17235 PF01970 Tripartite tricarboxylate transporter TctA family HRD54_RS17245 PF03401 Tripartite tricarboxylate transporter family receptor HRD54_RS17255 PF00701 Dihydrodipicolinate synthetase family HRD54_RS17265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD54_RS17265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD54_RS17275 PF00005 ABC transporter HRD54_RS17280 PF00005 ABC transporter HRD54_RS17285 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD54_RS17285 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS17290 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS17295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD54_RS17300 PF08241 Methyltransferase domain HRD54_RS17310 PF13505 Outer membrane protein beta-barrel domain HRD54_RS17315 PF04794 YdjC-like protein HRD54_RS17320 PF02056 Family 4 glycosyl hydrolase HRD54_RS17320 PF11975 Family 4 glycosyl hydrolase C-terminal domain HRD54_RS17325 PF12833 Helix-turn-helix domain HRD54_RS17325 PF07883 Cupin domain HRD54_RS17330 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HRD54_RS17335 PF02378 Phosphotransferase system, EIIC HRD54_RS17340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRD54_RS17345 PF01497 Periplasmic binding protein HRD54_RS17350 PF01032 FecCD transport family HRD54_RS17355 PF01032 FecCD transport family HRD54_RS17360 PF00005 ABC transporter HRD54_RS17370 PF07690 Major Facilitator Superfamily HRD54_RS17380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS17380 PF01568 Molydopterin dinucleotide binding domain HRD54_RS17380 PF00384 Molybdopterin oxidoreductase HRD54_RS17385 PF13247 4Fe-4S dicluster domain HRD54_RS17385 PF12800 4Fe-4S binding domain HRD54_RS17390 PF04976 DMSO reductase anchor subunit (DmsC) HRD54_RS17395 PF00356 Bacterial regulatory proteins, lacI family HRD54_RS17395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD54_RS17405 PF03825 Nucleoside H+ symporter HRD54_RS17410 PF02308 MgtC family HRD54_RS17415 PF01757 Acyltransferase family HRD54_RS17425 PF00701 Dihydrodipicolinate synthetase family HRD54_RS17430 PF01380 SIS domain HRD54_RS17430 PF01418 Helix-turn-helix domain, rpiR family HRD54_RS17435 PF04074 YhcH/YjgK/YiaL HRD54_RS17440 PF00474 Sodium:solute symporter family HRD54_RS17445 PF00480 ROK family HRD54_RS17450 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HRD54_RS17455 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD54_RS17455 PF00384 Molybdopterin oxidoreductase HRD54_RS17455 PF01568 Molydopterin dinucleotide binding domain HRD54_RS17460 PF00209 Sodium:neurotransmitter symporter family HRD54_RS17465 PF00206 Lyase HRD54_RS17465 PF10397 Adenylosuccinate lyase C-terminus HRD54_RS17470 PF00367 phosphotransferase system, EIIB HRD54_RS17470 PF02378 Phosphotransferase system, EIIC HRD54_RS17475 PF01418 Helix-turn-helix domain, rpiR family HRD54_RS17475 PF01380 SIS domain HRD54_RS17480 PF00313 'Cold-shock' DNA-binding domain HRD54_RS17485 PF00849 RNA pseudouridylate synthase HRD54_RS17490 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HRD54_RS17495 PF01844 HNH endonuclease HRD54_RS17500 PF05638 Type VI secretion system effector, Hcp HRD54_RS17505 PF04717 Type VI secretion system, phage-baseplate injector HRD54_RS17555 PF16967 E-set like domain HRD54_RS17555 PF15976 CS1-pili formation C-terminal HRD54_RS17560 PF18649 EcpB C-terminal domain HRD54_RS17565 PF16449 Fimbrillin MatB HRD54_RS17585 PF01432 Peptidase family M3 HRD54_RS17590 PF04445 Putative SAM-dependent methyltransferase HRD54_RS17600 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HRD54_RS17600 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HRD54_RS17605 PF00582 Universal stress protein family HRD54_RS17610 PF10625 Universal stress protein B (UspB) HRD54_RS17615 PF01384 Phosphate transporter family HRD54_RS17625 PF02678 Pirin HRD54_RS17625 PF17954 Quercetinase C-terminal cupin domain HRD54_RS17630 PF01293 Phosphoenolpyruvate carboxykinase HRD54_RS17635 PF01430 Hsp33 protein HRD54_RS17640 PF01479 S4 domain HRD54_RS17645 PF07095 Intracellular growth attenuator protein IgaA HRD54_RS17650 PF00293 NUDIX domain HRD54_RS17655 PF03180 NLPA lipoprotein HRD54_RS17660 PF00905 Penicillin binding protein transpeptidase domain HRD54_RS17660 PF17092 Penicillin-binding protein OB-like domain HRD54_RS17660 PF00912 Transglycosylase HRD54_RS17680 PF00263 Bacterial type II and III secretion system protein HRD54_RS17680 PF03958 Bacterial type II/III secretion system short domain HRD54_RS17685 PF01202 Shikimate kinase HRD54_RS17690 PF01761 3-dehydroquinate synthase HRD54_RS17695 PF05036 Sporulation related domain HRD54_RS17700 PF02086 D12 class N6 adenine-specific DNA methyltransferase HRD54_RS17705 PF00834 Ribulose-phosphate 3 epimerase family HRD54_RS17710 PF13419 Haloacid dehalogenase-like hydrolase HRD54_RS17715 PF00579 tRNA synthetases class I (W and Y) HRD54_RS17720 PF03475 3-alpha domain HRD54_RS17720 PF03473 MOSC domain HRD54_RS17725 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HRD54_RS17725 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HRD54_RS17730 PF13193 AMP-binding enzyme C-terminal domain HRD54_RS17730 PF16177 Acetyl-coenzyme A synthetase N-terminus HRD54_RS17730 PF00501 AMP-binding enzyme HRD54_RS17735 PF04341 Protein of unknown function, DUF485 HRD54_RS17740 PF00474 Sodium:solute symporter family HRD54_RS17745 PF00884 Sulfatase HRD54_RS17750 PF02589 LUD domain HRD54_RS17755 PF02589 LUD domain HRD54_RS17755 PF13183 4Fe-4S dicluster domain HRD54_RS17755 PF11870 Domain of unknown function (DUF3390) HRD54_RS17760 PF02754 Cysteine-rich domain HRD54_RS17785 PF00392 Bacterial regulatory proteins, gntR family HRD54_RS17785 PF07729 FCD domain HRD54_RS17790 PF07690 Major Facilitator Superfamily HRD54_RS17795 PF00294 pfkB family carbohydrate kinase HRD54_RS17800 PF07728 AAA domain (dynein-related subfamily) HRD54_RS17800 PF17868 AAA lid domain HRD54_RS17800 PF12592 Protein of unknown function (DUF3763) HRD54_RS17805 PF05762 VWA domain containing CoxE-like protein HRD54_RS17810 PF03590 Aspartate-ammonia ligase HRD54_RS17815 PF01037 Lrp/AsnC ligand binding domain HRD54_RS17820 PF00258 Flavodoxin HRD54_RS17825 PF13932 GidA associated domain HRD54_RS17825 PF01134 Glucose inhibited division protein A HRD54_RS17830 PF02527 rRNA small subunit methyltransferase G HRD54_RS17835 PF03899 ATP synthase I chain HRD54_RS17840 PF00119 ATP synthase A chain HRD54_RS17845 PF00137 ATP synthase subunit C HRD54_RS17850 PF00430 ATP synthase B/B' CF(0) HRD54_RS17855 PF00213 ATP synthase delta (OSCP) subunit HRD54_RS17860 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRD54_RS17860 PF00306 ATP synthase alpha/beta chain, C terminal domain HRD54_RS17860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD54_RS17865 PF00231 ATP synthase HRD54_RS17870 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRD54_RS17870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD54_RS17875 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HRD54_RS17875 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HRD54_RS17880 PF00132 Bacterial transferase hexapeptide (six repeats) HRD54_RS17880 PF12804 MobA-like NTP transferase domain HRD54_RS17885 PF01380 SIS domain HRD54_RS17890 PF08402 TOBE domain HRD54_RS17890 PF00005 ABC transporter HRD54_RS17895 PF00528 Binding-protein-dependent transport system inner membrane component HRD54_RS17905 PF01266 FAD dependent oxidoreductase HRD54_RS17930 PF03606 C4-dicarboxylate anaerobic carrier HRD54_RS17935 PF02909 Tetracyclin repressor-like, C-terminal domain HRD54_RS17935 PF00440 Bacterial regulatory proteins, tetR family HRD54_RS17940 PF13533 Biotin-lipoyl like HRD54_RS17960 PF13954 PapC N-terminal domain HRD54_RS17960 PF13953 PapC C-terminal domain HRD54_RS17960 PF00577 Outer membrane usher protein HRD54_RS17965 PF00577 Outer membrane usher protein HRD54_RS17965 PF13953 PapC C-terminal domain HRD54_RS17965 PF13954 PapC N-terminal domain HRD54_RS17990 PF04076 Bacterial OB fold (BOF) protein HRD54_RS18000 PF00480 ROK family HRD54_RS18010 PF03552 Cellulose synthase HRD54_RS18010 PF00535 Glycosyl transferase family 2 HRD54_RS18010 PF07238 PilZ domain HRD54_RS18015 PF03170 Bacterial cellulose synthase subunit HRD54_RS18020 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HRD54_RS18020 PF13181 Tetratricopeptide repeat HRD54_RS18030 PF08448 PAS fold HRD54_RS18030 PF00990 Diguanylate cyclase, GGDEF domain HRD54_RS18035 PF00483 Nucleotidyl transferase HRD54_RS18040 PF01270 Glycosyl hydrolases family 8 HRD54_RS18045 PF00884 Sulfatase HRD54_RS18050 PF03144 Elongation factor Tu domain 2 HRD54_RS18050 PF00009 Elongation factor Tu GTP binding domain HRD54_RS18050 PF09106 Elongation factor SelB, winged helix HRD54_RS18050 PF09107 Elongation factor SelB, winged helix HRD54_RS18055 PF03841 L-seryl-tRNA selenium transferase HRD54_RS18055 PF12390 Selenocysteine synthase N terminal HRD54_RS18060 PF04216 Protein involved in formate dehydrogenase formation HRD54_RS18065 PF01292 Prokaryotic cytochrome b561 HRD54_RS18070 PF13247 4Fe-4S dicluster domain HRD54_RS18070 PF09163 Formate dehydrogenase N, transmembrane HRD54_RS18080 PF02634 FdhD/NarQ family HRD54_RS18095 PF00795 Carbon-nitrogen hydrolase HRD54_RS18100 PF03466 LysR substrate binding domain HRD54_RS18100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD54_RS18120 PF03544 Gram-negative bacterial TonB protein C-terminal HRD54_RS18135 PF06496 Protein of unknown function (DUF1097) HRD54_RS18140 PF13657 HipA N-terminal domain HRD54_RS18140 PF07804 HipA-like C-terminal domain HRD54_RS18160 PF13610 DDE domain HRD54_RS18180 PF00893 Small Multidrug Resistance protein HRD54_RS18190 PF13495 Phage integrase, N-terminal SAM-like domain HRD54_RS18190 PF00589 Phage integrase family HRD54_RS18195 PF00239 Resolvase, N terminal domain HRD54_RS18195 PF02796 Helix-turn-helix domain of resolvase HRD54_RS18200 PF00004 ATPase family associated with various cellular activities (AAA) HRD54_RS18215 PF00580 UvrD/REP helicase N-terminal domain HRD54_RS18215 PF13361 UvrD-like helicase C-terminal domain HRD54_RS18245 PF06122 Conjugative relaxosome accessory transposon protein HRD54_RS18285 PF02899 Phage integrase, N-terminal SAM-like domain HRD54_RS18285 PF00589 Phage integrase family HRD54_RS18290 PF12631 MnmE helical domain HRD54_RS18290 PF01926 50S ribosome-binding GTPase HRD54_RS18290 PF10396 GTP-binding protein TrmE N-terminus HRD54_RS18295 PF14849 YidC periplasmic domain HRD54_RS18295 PF02096 60Kd inner membrane protein HRD54_RS18300 PF01809 Putative membrane protein insertion efficiency factor HRD54_RS18305 PF00825 Ribonuclease P HRD54_RS18310 PF00468 Ribosomal protein L34 HRD54_RS18335 PF07728 AAA domain (dynein-related subfamily) HRD54_RS18335 PF08406 CbbQ/NirQ/NorQ C-terminal HRD54_RS18335 PF12556 Cobaltochelatase CobS subunit N terminal HRD54_RS18370 PF06986 Type-1V conjugative transfer system mating pair stabilisation HRD54_RS18410 PF06406 StbA protein HRD54_RS18425 PF01051 Initiator Replication protein HRD54_RS18460 PF00717 Peptidase S24-like HRD54_RS18465 PF13438 Domain of unknown function (DUF4113) HRD54_RS18465 PF11798 IMS family HHH motif HRD54_RS18465 PF11799 impB/mucB/samB family C-terminal domain HRD54_RS18465 PF00817 impB/mucB/samB family HRD54_RS18475 PF00436 Single-strand binding protein family HRD54_RS18490 PF05638 Type VI secretion system effector, Hcp HRD54_RS18510 PF13614 AAA domain HRD54_RS18515 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HRD54_RS18520 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HRD54_RS18530 PF01848 Hok/gef family HRD54_RS18550 PF02899 Phage integrase, N-terminal SAM-like domain HRD54_RS18550 PF00589 Phage integrase family HRD54_RS18555 PF08722 TnsA endonuclease N terminal HRD54_RS18555 PF08721 TnsA endonuclease C terminal HRD54_RS18560 PF00665 Integrase core domain HRD54_RS18565 PF13401 AAA domain HRD54_RS18565 PF11426 Tn7 transposition regulator TnsC HRD54_RS18575 PF12729 Four helix bundle sensory module for signal transduction HRD54_RS18575 PF00672 HAMP domain HRD54_RS18575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD54_RS18580 PF13610 DDE domain HRD54_RS18590 PF01636 Phosphotransferase enzyme family HRD54_RS18600 PF13610 DDE domain HRD54_RS18610 PF00753 Metallo-beta-lactamase superfamily HRD54_RS18620 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HRD54_RS18625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD54_RS18630 PF03091 CutA1 divalent ion tolerance protein HRD54_RS18635 PF00166 Chaperonin 10 Kd subunit HRD54_RS18640 PF00118 TCP-1/cpn60 chaperonin family HRD54_RS18660 PF13610 DDE domain HRD54_RS18680 PF00893 Small Multidrug Resistance protein HRD54_RS18685 PF01909 Nucleotidyltransferase domain HRD54_RS18685 PF13427 Domain of unknown function (DUF4111) HRD54_RS18690 PF00186 Dihydrofolate reductase HRD54_RS18700 PF13495 Phage integrase, N-terminal SAM-like domain HRD54_RS18700 PF00589 Phage integrase family HRD54_RS18705 PF13495 Phage integrase, N-terminal SAM-like domain HRD54_RS18705 PF00589 Phage integrase family HRD54_RS18725 PF10502 Signal peptidase, peptidase S26 HRD54_RS18825 PF03743 Bacterial conjugation TrbI-like protein HRD54_RS18850 PF10502 Signal peptidase, peptidase S26