ACHL_RS00010	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS00010	SM00760	Bacterial dnaA protein helix-turn-helix domain
ACHL_RS00015	SM00480	DNA polymerase III beta subunit
ACHL_RS00020	SM01350	ACHL_RS00020
ACHL_RS00025	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS00035	SM00387	Histidine kinase-like ATPases
ACHL_RS00035	SM00433	TopoisomeraseII
ACHL_RS00040	SM00434	DNA Topoisomerase IV
ACHL_RS00110	SM00220	Serine/Threonine protein kinases, catalytic domain
ACHL_RS00110	SM00740	ACHL_RS00110
ACHL_RS00115	SM00220	Serine/Threonine protein kinases, catalytic domain
ACHL_RS00130	SM00331	Sigma factor PP2C-like phosphatases
ACHL_RS00130	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ACHL_RS00135	SM00240	Forkhead associated domain
ACHL_RS00140	SM00240	Forkhead associated domain
ACHL_RS00170	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS00175	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS00190	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS00200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS00200	SM00895	ACHL_RS00200
ACHL_RS00205	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS00275	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS00325	SM01091	Transporter associated domain
ACHL_RS00335	SM00267	diguanylate cyclase
ACHL_RS00355	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS00375	SM00422	helix_turn_helix, mercury resistance
ACHL_RS00410	SM00903	Flavin reductase like domain
ACHL_RS00415	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS00415	SM00895	ACHL_RS00415
ACHL_RS00455	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ACHL_RS00465	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS00525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS00525	SM00895	ACHL_RS00525
ACHL_RS00550	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS00560	SM00342	helix_turn_helix, arabinose operon control protein
ACHL_RS00585	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS00590	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS00635	SM00342	helix_turn_helix, arabinose operon control protein
ACHL_RS00740	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS00780	SM00387	Histidine kinase-like ATPases
ACHL_RS00780	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS00800	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ACHL_RS00830	SM00857	Resolvase, N terminal domain
ACHL_RS00870	SM00878	Biotin carboxylase C-terminal domain
ACHL_RS00875	SM00796	Allophanate hydrolase subunit 1
ACHL_RS00875	SM00797	Allophanate hydrolase subunit 2
ACHL_RS00890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS00890	SM00895	ACHL_RS00890
ACHL_RS00900	SM00954	Region found in RelA / SpoT proteins
ACHL_RS00910	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS00975	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS00995	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS01015	SM00450	Rhodanese Homology Domain
ACHL_RS01025	SM00450	Rhodanese Homology Domain
ACHL_RS01030	SM00450	Rhodanese Homology Domain
ACHL_RS01040	SM00450	Rhodanese Homology Domain
ACHL_RS01040	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS01060	SM00235	Zinc-dependent metalloprotease
ACHL_RS01070	SM00822	ACHL_RS01070
ACHL_RS01085	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS01110	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS01120	SM00226	Low molecular weight phosphatase family
ACHL_RS01130	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS01160	SM00052	Putative diguanylate phosphodiesterase
ACHL_RS01165	SM00052	Putative diguanylate phosphodiesterase
ACHL_RS01165	SM00267	diguanylate cyclase
ACHL_RS01170	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACHL_RS01170	SM00387	Histidine kinase-like ATPases
ACHL_RS01170	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS01295	SM01217	ACHL_RS01295
ACHL_RS01350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS01350	SM00895	ACHL_RS01350
ACHL_RS01390	SM00450	Rhodanese Homology Domain
ACHL_RS01405	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ACHL_RS01440	SM00450	Rhodanese Homology Domain
ACHL_RS01475	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS01485	SM00855	Phosphoglycerate mutase family
ACHL_RS01550	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS01555	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS01570	SM00905	Dihydroneopterin aldolase
ACHL_RS01605	SM00507	HNH nucleases
ACHL_RS01640	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS01640	SM01086	C-terminal, D2-small domain, of ClpB protein
ACHL_RS01660	SM01120	ACHL_RS01660
ACHL_RS01680	SM00478	endonuclease III
ACHL_RS01680	SM00525	ACHL_RS01680
ACHL_RS01710	SM00825	Beta-ketoacyl synthase
ACHL_RS01720	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS01730	SM01130	ACHL_RS01730
ACHL_RS01775	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS01800	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS01835	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS01880	SM01007	Class II Aldolase and Adducin N-terminal domain
ACHL_RS01890	SM01012	ACHL_RS01890
ACHL_RS01895	SM00813	Alpha-L-arabinofuranosidase C-terminus
ACHL_RS01905	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS01940	SM00988	UreE urease accessory protein, N-terminal domain
ACHL_RS01990	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS02000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS02000	SM00895	ACHL_RS02000
ACHL_RS02005	SM00861	Transketolase, pyrimidine binding domain
ACHL_RS02030	SM01120	ACHL_RS02030
ACHL_RS02055	SM01012	ACHL_RS02055
ACHL_RS02065	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS02095	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS02100	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS02145	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS02185	SM01329	ACHL_RS02185
ACHL_RS02305	SM00796	Allophanate hydrolase subunit 1
ACHL_RS02310	SM00797	Allophanate hydrolase subunit 2
ACHL_RS02330	SM00822	ACHL_RS02330
ACHL_RS02335	SM00829	Enoylreductase
ACHL_RS02375	SM00642	Alpha-amylase domain
ACHL_RS02440	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS02455	SM00656	ACHL_RS02455
ACHL_RS02460	SM00656	ACHL_RS02460
ACHL_RS02460	SM00710	Parallel beta-helix repeats
ACHL_RS02490	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS02495	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS02495	SM00895	ACHL_RS02495
ACHL_RS02550	SM01006	Siderophore biosynthesis protein domain
ACHL_RS02560	SM00822	ACHL_RS02560
ACHL_RS02585	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
ACHL_RS02615	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACHL_RS02615	SM01134	ACHL_RS02615
ACHL_RS02645	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACHL_RS02900	SM00507	HNH nucleases
ACHL_RS02915	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS02965	SM00091	PAS domain
ACHL_RS02965	SM00387	Histidine kinase-like ATPases
ACHL_RS02970	SM00448	cheY-homologous receiver domain
ACHL_RS03015	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS03050	SM00481	DNA polymerase alpha chain like domain
ACHL_RS03110	SM00642	Alpha-amylase domain
ACHL_RS03135	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS03175	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS03185	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS03195	SM00422	helix_turn_helix, mercury resistance
ACHL_RS03205	SM00357	Cold shock protein domain
ACHL_RS03210	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS03210	SM00448	cheY-homologous receiver domain
ACHL_RS03215	SM00387	Histidine kinase-like ATPases
ACHL_RS03225	SM00248	ankyrin repeats
ACHL_RS03235	SM00882	Coenzyme A transferase
ACHL_RS03245	SM00882	Coenzyme A transferase
ACHL_RS03250	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS03265	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACHL_RS03265	SM01012	ACHL_RS03265
ACHL_RS03325	SM00631	ACHL_RS03325
ACHL_RS03330	SM00788	Adenylosuccinate synthetase
ACHL_RS03355	SM00881	CoA binding domain
ACHL_RS03390	SM01211	ACHL_RS03390
ACHL_RS03425	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS03445	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS03460	SM00493	ACHL_RS03460
ACHL_RS03465	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS03560	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS03570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACHL_RS03570	SM00387	Histidine kinase-like ATPases
ACHL_RS03570	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS03575	SM00448	cheY-homologous receiver domain
ACHL_RS03575	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS03665	SM00640	Glycosyl hydrolases family 32
ACHL_RS03670	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS03690	SM00822	ACHL_RS03690
ACHL_RS03740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS03750	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ACHL_RS03750	SM01232	ACHL_RS03750
ACHL_RS03755	SM00487	DEAD-like helicases superfamily
ACHL_RS03755	SM00490	helicase superfamily c-terminal domain
ACHL_RS03870	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS03875	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ACHL_RS03880	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS03890	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS03915	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS03920	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS03935	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS03955	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS03975	SM00507	HNH nucleases
ACHL_RS04000	SM00014	Acid phosphatase homologues
ACHL_RS04020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACHL_RS04020	SM00387	Histidine kinase-like ATPases
ACHL_RS04020	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS04025	SM00448	cheY-homologous receiver domain
ACHL_RS04025	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS04030	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS04105	SM00487	DEAD-like helicases superfamily
ACHL_RS04105	SM00490	helicase superfamily c-terminal domain
ACHL_RS04155	SM00829	Enoylreductase
ACHL_RS04165	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS04260	SM00855	Phosphoglycerate mutase family
ACHL_RS04270	SM00387	Histidine kinase-like ATPases
ACHL_RS04270	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS04275	SM00448	cheY-homologous receiver domain
ACHL_RS04275	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS04285	SM01058	CarD-like/TRCF domain
ACHL_RS04300	SM00840	ACHL_RS04300
ACHL_RS04305	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ACHL_RS04310	SM00642	Alpha-amylase domain
ACHL_RS04330	SM00642	Alpha-amylase domain
ACHL_RS04335	SM00642	Alpha-amylase domain
ACHL_RS04340	SM00642	Alpha-amylase domain
ACHL_RS04375	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS04405	SM00838	Elongation factor G C-terminus
ACHL_RS04405	SM00889	Elongation factor G, domain IV
ACHL_RS04490	SM00986	Uracil DNA glycosylase superfamily
ACHL_RS04490	SM00987	UreE urease accessory protein, C-terminal domain 
ACHL_RS04505	SM00357	Cold shock protein domain
ACHL_RS04535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACHL_RS04535	SM00387	Histidine kinase-like ATPases
ACHL_RS04535	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS04540	SM00448	cheY-homologous receiver domain
ACHL_RS04540	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS04570	SM00487	DEAD-like helicases superfamily
ACHL_RS04570	SM00490	helicase superfamily c-terminal domain
ACHL_RS04585	SM00357	Cold shock protein domain
ACHL_RS04600	SM00529	Helix-turn-helix diphteria tox regulatory element
ACHL_RS04600	SM00899	ACHL_RS04600
ACHL_RS04620	SM00507	HNH nucleases
ACHL_RS04635	SM00852	Probable molybdopterin binding domain
ACHL_RS04645	SM00872	Alpha mannosidase, middle domain
ACHL_RS04660	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS04665	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS04715	SM00881	CoA binding domain
ACHL_RS04725	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS04775	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS04815	SM00857	Resolvase, N terminal domain
ACHL_RS04820	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS04830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS04830	SM00866	ACHL_RS04830
ACHL_RS04845	SM00235	Zinc-dependent metalloprotease
ACHL_RS04865	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS04885	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS04885	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS04895	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS04900	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS04915	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS04925	SM00387	Histidine kinase-like ATPases
ACHL_RS04925	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS04930	SM00448	cheY-homologous receiver domain
ACHL_RS04930	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS04960	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACHL_RS04960	SM00876	Biotin and Thiamin Synthesis associated domain
ACHL_RS04990	SM00316	Ribosomal protein S1-like RNA-binding domain
ACHL_RS04990	SM00732	Likely ribonuclease with RNase H fold.
ACHL_RS05020	SM00257	Lysin motif
ACHL_RS05045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS05045	SM00895	ACHL_RS05045
ACHL_RS05060	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS05085	SM00487	DEAD-like helicases superfamily
ACHL_RS05085	SM00490	helicase superfamily c-terminal domain
ACHL_RS05125	SM00642	Alpha-amylase domain
ACHL_RS05135	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS05145	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS05195	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS05215	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS05280	SM01061	CAT RNA binding domain
ACHL_RS05385	SM00829	Enoylreductase
ACHL_RS05390	SM00728	Clostridial hydrophobic, with a conserved W residue, domain.
ACHL_RS05395	SM00481	DNA polymerase alpha chain like domain
ACHL_RS05415	SM00344	helix_turn_helix ASNC type
ACHL_RS05430	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS05450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS05450	SM00895	ACHL_RS05450
ACHL_RS05475	SM00487	DEAD-like helicases superfamily
ACHL_RS05475	SM00490	helicase superfamily c-terminal domain
ACHL_RS05495	SM00487	DEAD-like helicases superfamily
ACHL_RS05530	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACHL_RS05530	SM01134	ACHL_RS05530
ACHL_RS05555	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS05560	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS05580	SM00822	ACHL_RS05580
ACHL_RS05620	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS05630	SM00062	Bacterial periplasmic substrate-binding proteins
ACHL_RS05630	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACHL_RS05640	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS05640	SM00895	ACHL_RS05640
ACHL_RS05655	SM00342	helix_turn_helix, arabinose operon control protein
ACHL_RS05655	SM00871	Bacterial transcription activator, effector binding domain
ACHL_RS05675	SM00357	Cold shock protein domain
ACHL_RS05680	SM01043	Bacterial transcriptional activator domain
ACHL_RS05695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS05695	SM00895	ACHL_RS05695
ACHL_RS05710	SM00822	ACHL_RS05710
ACHL_RS05720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS05775	SM00052	Putative diguanylate phosphodiesterase
ACHL_RS05775	SM00091	PAS domain
ACHL_RS05775	SM00267	diguanylate cyclase
ACHL_RS05790	SM00047	Lysozyme subfamily 2
ACHL_RS05820	SM01043	Bacterial transcriptional activator domain
ACHL_RS05865	SM00798	AICARFT/IMPCHase bienzyme
ACHL_RS05865	SM00851	MGS-like domain
ACHL_RS05885	SM00220	Serine/Threonine protein kinases, catalytic domain
ACHL_RS05905	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS05915	SM00656	ACHL_RS05915
ACHL_RS05930	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS05980	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS06060	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS06070	SM00829	Enoylreductase
ACHL_RS06080	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS06100	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
ACHL_RS06125	SM01192	ACHL_RS06125
ACHL_RS06125	SM01193	ACHL_RS06125
ACHL_RS06170	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS06175	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS06255	SM00670	Large family of predicted nucleotide-binding domains
ACHL_RS06295	SM00947	Carbonic anhydrase
ACHL_RS06325	SM01001	AIR carboxylase
ACHL_RS06375	SM00996	S-adenosyl-L-homocysteine hydrolase
ACHL_RS06375	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ACHL_RS06420	SM00460	Transglutaminase/protease-like homologues
ACHL_RS06440	SM01208	ACHL_RS06440
ACHL_RS06445	SM00650	Ribosomal RNA adenine dimethylases
ACHL_RS06455	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS06475	SM01400	ACHL_RS06475
ACHL_RS06490	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS06495	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS06525	SM00487	DEAD-like helicases superfamily
ACHL_RS06525	SM00490	helicase superfamily c-terminal domain
ACHL_RS06525	SM00982	ACHL_RS06525
ACHL_RS06525	SM01058	CarD-like/TRCF domain
ACHL_RS06540	SM01133	ACHL_RS06540
ACHL_RS06555	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS06600	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ACHL_RS06690	SM00060	Fibronectin type 3 domain
ACHL_RS06695	SM00060	Fibronectin type 3 domain
ACHL_RS06710	SM00460	Transglutaminase/protease-like homologues
ACHL_RS06720	SM00331	Sigma factor PP2C-like phosphatases
ACHL_RS06720	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ACHL_RS06730	SM00220	Serine/Threonine protein kinases, catalytic domain
ACHL_RS06740	SM00240	Forkhead associated domain
ACHL_RS06740	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS06750	SM00292	breast cancer carboxy-terminal domain
ACHL_RS06750	SM00532	Ligase N family
ACHL_RS06770	SM00448	cheY-homologous receiver domain
ACHL_RS06775	SM00091	PAS domain
ACHL_RS06775	SM00387	Histidine kinase-like ATPases
ACHL_RS06795	SM00845	GatB domain
ACHL_RS06825	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACHL_RS06825	SM01134	ACHL_RS06825
ACHL_RS06860	SM00363	S4 RNA-binding domain
ACHL_RS06880	SM00563	Phosphate acyltransferases
ACHL_RS06900	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACHL_RS06905	SM00400	zinc finger
ACHL_RS06905	SM00493	ACHL_RS06905
ACHL_RS07010	SM00448	cheY-homologous receiver domain
ACHL_RS07010	SM00850	LytTr DNA-binding domain
ACHL_RS07015	SM00387	Histidine kinase-like ATPases
ACHL_RS07035	SM00344	helix_turn_helix ASNC type
ACHL_RS07045	SM00861	Transketolase, pyrimidine binding domain
ACHL_RS07065	SM00878	Biotin carboxylase C-terminal domain
ACHL_RS07075	SM00882	Coenzyme A transferase
ACHL_RS07080	SM00882	Coenzyme A transferase
ACHL_RS07170	SM00316	Ribosomal protein S1-like RNA-binding domain
ACHL_RS07225	SM00904	Riboflavin kinase
ACHL_RS07240	SM01387	ACHL_RS07240
ACHL_RS07245	SM00316	Ribosomal protein S1-like RNA-binding domain
ACHL_RS07245	SM00322	K homology RNA-binding domain
ACHL_RS07270	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACHL_RS07280	SM00852	Probable molybdopterin binding domain
ACHL_RS07290	SM00852	Probable molybdopterin binding domain
ACHL_RS07320	SM01130	ACHL_RS07320
ACHL_RS07325	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS07330	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS07330	SM00843	ACHL_RS07330
ACHL_RS07345	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS07350	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS07360	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS07370	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACHL_RS07395	SM00487	DEAD-like helicases superfamily
ACHL_RS07395	SM00491	ACHL_RS07395
ACHL_RS07405	SM00257	Lysin motif
ACHL_RS07460	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ACHL_RS07505	SM00873	B3/4 domain
ACHL_RS07505	SM00874	tRNA synthetase B5 domain
ACHL_RS07505	SM00896	Ferredoxin-fold anticodon binding domain
ACHL_RS07525	SM00829	Enoylreductase
ACHL_RS07530	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACHL_RS07585	SM00342	helix_turn_helix, arabinose operon control protein
ACHL_RS07585	SM00478	endonuclease III
ACHL_RS07585	SM01009	AlkA N-terminal domain
ACHL_RS07600	SM00363	S4 RNA-binding domain
ACHL_RS07635	SM00363	S4 RNA-binding domain
ACHL_RS07690	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS07690	SM00895	ACHL_RS07690
ACHL_RS07700	SM00448	cheY-homologous receiver domain
ACHL_RS07705	SM00387	Histidine kinase-like ATPases
ACHL_RS07730	SM00363	S4 RNA-binding domain
ACHL_RS07745	SM00563	Phosphate acyltransferases
ACHL_RS07750	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS07765	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ACHL_RS07765	SM01232	ACHL_RS07765
ACHL_RS07775	SM00240	Forkhead associated domain
ACHL_RS07780	SM00422	helix_turn_helix, mercury resistance
ACHL_RS07795	SM00422	helix_turn_helix, mercury resistance
ACHL_RS07805	SM00878	Biotin carboxylase C-terminal domain
ACHL_RS07835	SM00563	Phosphate acyltransferases
ACHL_RS07845	SM00220	Serine/Threonine protein kinases, catalytic domain
ACHL_RS07845	SM00740	ACHL_RS07845
ACHL_RS07850	SM00257	Lysin motif
ACHL_RS07940	SM00864	Tubulin/FtsZ family, GTPase domain
ACHL_RS07940	SM00865	Tubulin/FtsZ family, C-terminal domain
ACHL_RS07980	SM00481	DNA polymerase alpha chain like domain
ACHL_RS07985	SM00903	Flavin reductase like domain
ACHL_RS08020	SM01230	ACHL_RS08020
ACHL_RS08035	SM01230	ACHL_RS08035
ACHL_RS08055	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACHL_RS08075	SM00245	tail specific protease
ACHL_RS08130	SM00387	Histidine kinase-like ATPases
ACHL_RS08130	SM00433	TopoisomeraseII
ACHL_RS08155	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS08170	SM00434	DNA Topoisomerase IV
ACHL_RS08175	SM00881	CoA binding domain
ACHL_RS08195	SM00507	HNH nucleases
ACHL_RS08255	SM00861	Transketolase, pyrimidine binding domain
ACHL_RS08295	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS08310	SM00341	Helicase and RNase D C-terminal
ACHL_RS08310	SM00474	3'-5' exonuclease
ACHL_RS08325	SM00822	ACHL_RS08325
ACHL_RS08360	SM00450	Rhodanese Homology Domain
ACHL_RS08545	SM00448	cheY-homologous receiver domain
ACHL_RS08545	SM01012	ACHL_RS08545
ACHL_RS08555	SM00822	ACHL_RS08555
ACHL_RS08560	SM00052	Putative diguanylate phosphodiesterase
ACHL_RS08600	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACHL_RS08600	SM00387	Histidine kinase-like ATPases
ACHL_RS08605	SM00448	cheY-homologous receiver domain
ACHL_RS08630	SM00387	Histidine kinase-like ATPases
ACHL_RS08630	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS08635	SM00448	cheY-homologous receiver domain
ACHL_RS08635	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS08645	SM00342	helix_turn_helix, arabinose operon control protein
ACHL_RS08665	SM00829	Enoylreductase
ACHL_RS08700	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACHL_RS08700	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACHL_RS08715	SM00903	Flavin reductase like domain
ACHL_RS08750	SM01060	ACHL_RS08750
ACHL_RS08770	SM00829	Enoylreductase
ACHL_RS08785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS08785	SM00866	ACHL_RS08785
ACHL_RS08805	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS08810	SM00923	MbtH-like protein
ACHL_RS08815	SM00823	Phosphopantetheine attachment site
ACHL_RS08815	SM00824	Thioesterase
ACHL_RS08850	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS08885	SM00244	prohibitin homologues
ACHL_RS08915	SM00822	ACHL_RS08915
ACHL_RS08930	SM00327	von Willebrand factor (vWF) type A domain
ACHL_RS08950	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ACHL_RS08950	SM00475	5'-3' exonuclease
ACHL_RS08960	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS08985	SM00903	Flavin reductase like domain
ACHL_RS09000	SM00487	DEAD-like helicases superfamily
ACHL_RS09000	SM00490	helicase superfamily c-terminal domain
ACHL_RS09000	SM00847	Helicase associated domain (HA2)  Add an annotation
ACHL_RS09025	SM00387	Histidine kinase-like ATPases
ACHL_RS09025	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS09030	SM00448	cheY-homologous receiver domain
ACHL_RS09030	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS09045	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS09080	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ACHL_RS09080	SM00474	3'-5' exonuclease
ACHL_RS09080	SM00475	5'-3' exonuclease
ACHL_RS09080	SM00482	DNA polymerase A domain
ACHL_RS09090	SM00316	Ribosomal protein S1-like RNA-binding domain
ACHL_RS09110	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09120	SM00487	DEAD-like helicases superfamily
ACHL_RS09120	SM00490	helicase superfamily c-terminal domain
ACHL_RS09145	SM00487	DEAD-like helicases superfamily
ACHL_RS09145	SM00490	helicase superfamily c-terminal domain
ACHL_RS09155	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09160	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09165	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS09170	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09180	SM00563	Phosphate acyltransferases
ACHL_RS09185	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACHL_RS09185	SM00465	GIY-YIG type nucleases (URI domain)
ACHL_RS09210	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ACHL_RS09260	SM00861	Transketolase, pyrimidine binding domain
ACHL_RS09270	SM00947	Carbonic anhydrase
ACHL_RS09285	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09310	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09340	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09360	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09380	SM00422	helix_turn_helix, mercury resistance
ACHL_RS09435	SM00822	ACHL_RS09435
ACHL_RS09450	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09495	SM00460	Transglutaminase/protease-like homologues
ACHL_RS09535	SM00822	ACHL_RS09535
ACHL_RS09660	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS09720	SM00487	DEAD-like helicases superfamily
ACHL_RS09720	SM00490	helicase superfamily c-terminal domain
ACHL_RS09720	SM01142	ACHL_RS09720
ACHL_RS09740	SM00244	prohibitin homologues
ACHL_RS09825	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS09825	SM00866	ACHL_RS09825
ACHL_RS09890	SM00917	LeuA allosteric (dimerisation) domain
ACHL_RS09910	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACHL_RS09910	SM01091	Transporter associated domain
ACHL_RS09925	SM00909	Sporulation and spore germination
ACHL_RS09935	SM00271	DnaJ molecular chaperone homology domain
ACHL_RS09955	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACHL_RS09960	SM00838	Elongation factor G C-terminus
ACHL_RS09985	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACHL_RS10050	SM01409	ACHL_RS10050
ACHL_RS10055	SM00072	Guanylate kinase homologues.
ACHL_RS10065	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ACHL_RS10070	SM00851	MGS-like domain
ACHL_RS10070	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ACHL_RS10075	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ACHL_RS10110	SM00841	Elongation factor P, C-terminal
ACHL_RS10110	SM01185	ACHL_RS10110
ACHL_RS10145	SM00732	Likely ribonuclease with RNase H fold.
ACHL_RS10150	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACHL_RS10165	SM00363	S4 RNA-binding domain
ACHL_RS10165	SM01390	ACHL_RS10165
ACHL_RS10170	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS10205	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACHL_RS10205	SM00954	Region found in RelA / SpoT proteins
ACHL_RS10220	SM01323	ACHL_RS10220
ACHL_RS10225	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS10230	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACHL_RS10260	SM00854	Bacterial capsule synthesis protein PGA_cap
ACHL_RS10285	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACHL_RS10290	SM00481	DNA polymerase alpha chain like domain
ACHL_RS10305	SM00830	Chorismate mutase type II
ACHL_RS10395	SM00257	Lysin motif
ACHL_RS10440	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS10440	SM00448	cheY-homologous receiver domain
ACHL_RS10510	SM00871	Bacterial transcription activator, effector binding domain
ACHL_RS10525	SM00829	Enoylreductase
ACHL_RS10530	SM00244	prohibitin homologues
ACHL_RS10535	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS10560	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS10570	SM00829	Enoylreductase
ACHL_RS10580	SM00855	Phosphoglycerate mutase family
ACHL_RS10620	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS10710	SM00327	von Willebrand factor (vWF) type A domain
ACHL_RS10795	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ACHL_RS10820	SM00316	Ribosomal protein S1-like RNA-binding domain
ACHL_RS10825	SM00756	ACHL_RS10825
ACHL_RS10830	SM00562	ACHL_RS10830
ACHL_RS10870	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS10870	SM00994	ClpX C4-type zinc finger
ACHL_RS10870	SM01086	C-terminal, D2-small domain, of ClpB protein
ACHL_RS10900	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ACHL_RS10900	SM01232	ACHL_RS10900
ACHL_RS10950	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11000	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS11025	SM00479	ACHL_RS11025
ACHL_RS11050	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ACHL_RS11090	SM01350	ACHL_RS11090
ACHL_RS11095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS11095	SM00895	ACHL_RS11095
ACHL_RS11135	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ACHL_RS11150	SM00825	Beta-ketoacyl synthase
ACHL_RS11250	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11250	SM00962	SRP54-type protein, GTPase domain
ACHL_RS11250	SM00963	SRP54-type protein, helical bundle domain
ACHL_RS11260	SM00938	Nitrogen regulatory protein P-II
ACHL_RS11275	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11275	SM00962	SRP54-type protein, GTPase domain
ACHL_RS11275	SM00963	SRP54-type protein, helical bundle domain
ACHL_RS11280	SM00968	SMC proteins Flexible Hinge Domain
ACHL_RS11295	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ACHL_RS11295	SM01232	ACHL_RS11295
ACHL_RS11300	SM00358	Double-stranded RNA binding motif
ACHL_RS11300	SM00535	Ribonuclease III family
ACHL_RS11340	SM00487	DEAD-like helicases superfamily
ACHL_RS11340	SM00490	helicase superfamily c-terminal domain
ACHL_RS11345	SM01120	ACHL_RS11345
ACHL_RS11370	SM00563	Phosphate acyltransferases
ACHL_RS11390	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS11440	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS11455	SM01329	ACHL_RS11455
ACHL_RS11465	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS11465	SM00448	cheY-homologous receiver domain
ACHL_RS11470	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11485	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11530	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS11545	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ACHL_RS11570	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS11575	SM00460	Transglutaminase/protease-like homologues
ACHL_RS11640	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS11675	SM00479	ACHL_RS11675
ACHL_RS11725	SM00487	DEAD-like helicases superfamily
ACHL_RS11745	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11790	SM00357	Cold shock protein domain
ACHL_RS11815	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11885	SM00937	ACHL_RS11885
ACHL_RS11890	SM00357	Cold shock protein domain
ACHL_RS11890	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11890	SM00959	Rho termination factor, N-terminal domain
ACHL_RS11915	SM00836	DALR anticodon binding domain
ACHL_RS11915	SM01016	Arginyl tRNA synthetase N terminal dom
ACHL_RS11920	SM00900	ACHL_RS11920
ACHL_RS11950	SM00342	helix_turn_helix, arabinose operon control protein
ACHL_RS11955	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS11955	SM00487	DEAD-like helicases superfamily
ACHL_RS11955	SM00490	helicase superfamily c-terminal domain
ACHL_RS11955	SM00847	Helicase associated domain (HA2)  Add an annotation
ACHL_RS11970	SM00829	Enoylreductase
ACHL_RS11975	SM00450	Rhodanese Homology Domain
ACHL_RS11985	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS12000	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12015	SM01091	Transporter associated domain
ACHL_RS12020	SM00861	Transketolase, pyrimidine binding domain
ACHL_RS12080	SM00529	Helix-turn-helix diphteria tox regulatory element
ACHL_RS12080	SM00899	ACHL_RS12080
ACHL_RS12100	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACHL_RS12125	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12130	SM00937	ACHL_RS12130
ACHL_RS12230	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12255	SM00240	Forkhead associated domain
ACHL_RS12255	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12270	SM00387	Histidine kinase-like ATPases
ACHL_RS12310	SM00957	SecA DEAD-like domain
ACHL_RS12310	SM00958	SecA preprotein cross-linking domain
ACHL_RS12330	SM00909	Sporulation and spore germination
ACHL_RS12335	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACHL_RS12335	SM00387	Histidine kinase-like ATPases
ACHL_RS12335	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS12340	SM00448	cheY-homologous receiver domain
ACHL_RS12340	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS12380	SM00830	Chorismate mutase type II
ACHL_RS12385	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12420	SM00271	DnaJ molecular chaperone homology domain
ACHL_RS12445	SM00893	Electron transfer flavoprotein domain
ACHL_RS12450	SM00893	Electron transfer flavoprotein domain
ACHL_RS12455	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACHL_RS12510	SM00341	Helicase and RNase D C-terminal
ACHL_RS12540	SM00479	ACHL_RS12540
ACHL_RS12545	SM00062	Bacterial periplasmic substrate-binding proteins
ACHL_RS12555	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12570	SM01004	Delta-aminolevulinic acid dehydratase
ACHL_RS12615	SM00450	Rhodanese Homology Domain
ACHL_RS12655	SM00955	ACHL_RS12655
ACHL_RS12660	SM00487	DEAD-like helicases superfamily
ACHL_RS12660	SM00490	helicase superfamily c-terminal domain
ACHL_RS12670	SM00481	DNA polymerase alpha chain like domain
ACHL_RS12675	SM01011	Aminopeptidase P, N-terminal domain
ACHL_RS12685	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACHL_RS12685	SM00924	MgtE intracellular N domain
ACHL_RS12735	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12740	SM00062	Bacterial periplasmic substrate-binding proteins
ACHL_RS12815	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12915	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS12940	SM00344	helix_turn_helix ASNC type
ACHL_RS13000	SM00834	Putative regulatory protein
ACHL_RS13005	SM00858	ACHL_RS13005
ACHL_RS13040	SM01240	ACHL_RS13040
ACHL_RS13065	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS13070	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACHL_RS13070	SM01240	ACHL_RS13070
ACHL_RS13090	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS13110	SM00883	Chaperonin 10 Kd subunit
ACHL_RS13170	SM01005	Alanine racemase, C-terminal domain
ACHL_RS13205	SM00422	helix_turn_helix, mercury resistance
ACHL_RS13220	SM00642	Alpha-amylase domain
ACHL_RS13225	SM00642	Alpha-amylase domain
ACHL_RS13230	SM00642	Alpha-amylase domain
ACHL_RS13370	SM00858	ACHL_RS13370
ACHL_RS13400	SM00448	cheY-homologous receiver domain
ACHL_RS13400	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS13415	SM00662	RNA polymerases D
ACHL_RS13465	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS13525	SM01374	ACHL_RS13525
ACHL_RS13545	SM00322	K homology RNA-binding domain
ACHL_RS13560	SM01382	ACHL_RS13560
ACHL_RS13560	SM01383	ACHL_RS13560
ACHL_RS13580	SM01403	ACHL_RS13580
ACHL_RS13600	SM00838	Elongation factor G C-terminus
ACHL_RS13600	SM00889	Elongation factor G, domain IV
ACHL_RS13615	SM00663	RNA polymerase I subunit A N-terminus
ACHL_RS13665	SM00649	Ribosomal protein L11/L12
ACHL_RS13670	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ACHL_RS13690	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS13690	SM00448	cheY-homologous receiver domain
ACHL_RS13730	SM00248	ankyrin repeats
ACHL_RS13755	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS13770	SM00855	Phosphoglycerate mutase family
ACHL_RS13780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS13800	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACHL_RS13865	SM00642	Alpha-amylase domain
ACHL_RS13900	SM00487	DEAD-like helicases superfamily
ACHL_RS13900	SM00490	helicase superfamily c-terminal domain
ACHL_RS13950	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACHL_RS13995	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS14015	SM00257	Lysin motif
ACHL_RS14020	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACHL_RS14055	SM01060	ACHL_RS14055
ACHL_RS14080	SM00829	Enoylreductase
ACHL_RS14110	SM00633	Glycosyl hydrolase family 10
ACHL_RS14150	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS14160	SM00880	ACHL_RS14160
ACHL_RS14160	SM01118	ACHL_RS14160
ACHL_RS14170	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS14170	SM00895	ACHL_RS14170
ACHL_RS14225	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS14265	SM00860	SMI1 / KNR4 family
ACHL_RS14295	SM00062	Bacterial periplasmic substrate-binding proteins
ACHL_RS14295	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACHL_RS14305	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS14330	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS14340	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS14355	SM00014	Acid phosphatase homologues
ACHL_RS14415	SM00052	Putative diguanylate phosphodiesterase
ACHL_RS14415	SM00091	PAS domain
ACHL_RS14415	SM00267	diguanylate cyclase
ACHL_RS14445	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS14475	SM00060	Fibronectin type 3 domain
ACHL_RS14480	SM00387	Histidine kinase-like ATPases
ACHL_RS14485	SM00448	cheY-homologous receiver domain
ACHL_RS14485	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS14485	SM01043	Bacterial transcriptional activator domain
ACHL_RS14490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACHL_RS14490	SM00387	Histidine kinase-like ATPases
ACHL_RS14490	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS14495	SM00448	cheY-homologous receiver domain
ACHL_RS14495	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS14520	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS14535	SM01012	ACHL_RS14535
ACHL_RS14540	SM00387	Histidine kinase-like ATPases
ACHL_RS14540	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS14545	SM00867	YceI-like domain 
ACHL_RS14580	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS14585	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS14595	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ACHL_RS14605	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS14610	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS14625	SM00640	Glycosyl hydrolases family 32
ACHL_RS14630	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS14660	SM00861	Transketolase, pyrimidine binding domain
ACHL_RS14670	SM00448	cheY-homologous receiver domain
ACHL_RS14670	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS14710	SM00344	helix_turn_helix ASNC type
ACHL_RS14760	SM00448	cheY-homologous receiver domain
ACHL_RS14760	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS14810	SM00984	UDP binding domain
ACHL_RS15015	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS15100	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS15115	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS15125	SM00822	ACHL_RS15125
ACHL_RS15150	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS15185	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACHL_RS15185	SM01012	ACHL_RS15185
ACHL_RS15220	SM01012	ACHL_RS15220
ACHL_RS15240	SM00226	Low molecular weight phosphatase family
ACHL_RS15255	SM00855	Phosphoglycerate mutase family
ACHL_RS15505	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS15535	SM00855	Phosphoglycerate mutase family
ACHL_RS15540	SM00867	YceI-like domain 
ACHL_RS15555	SM00881	CoA binding domain
ACHL_RS15605	SM01007	Class II Aldolase and Adducin N-terminal domain
ACHL_RS15620	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS15705	SM00507	HNH nucleases
ACHL_RS15750	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACHL_RS15755	SM01130	ACHL_RS15755
ACHL_RS15770	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS15780	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS15815	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ACHL_RS15815	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ACHL_RS15815	SM00493	ACHL_RS15815
ACHL_RS15835	SM00450	Rhodanese Homology Domain
ACHL_RS15845	SM00487	DEAD-like helicases superfamily
ACHL_RS15845	SM00490	helicase superfamily c-terminal domain
ACHL_RS15885	SM00482	DNA polymerase A domain
ACHL_RS15900	SM00478	endonuclease III
ACHL_RS15900	SM00525	ACHL_RS15900
ACHL_RS15930	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACHL_RS15930	SM01134	ACHL_RS15930
ACHL_RS15935	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS15950	SM00100	Cyclic nucleotide-monophosphate binding domain
ACHL_RS15950	SM00419	helix_turn_helix, cAMP Regulatory protein
ACHL_RS15975	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS15980	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS15995	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS16005	SM01209	ACHL_RS16005
ACHL_RS16005	SM01210	ACHL_RS16005
ACHL_RS16070	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ACHL_RS16120	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS16125	SM00919	Malic enzyme, NAD binding domain
ACHL_RS16125	SM01274	ACHL_RS16125
ACHL_RS16280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS16280	SM00895	ACHL_RS16280
ACHL_RS16310	SM00507	HNH nucleases
ACHL_RS16340	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS16350	SM01012	ACHL_RS16350
ACHL_RS16420	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS16425	SM00640	Glycosyl hydrolases family 32
ACHL_RS16450	SM01006	Siderophore biosynthesis protein domain
ACHL_RS16460	SM00829	Enoylreductase
ACHL_RS16470	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS16490	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS16540	SM01012	ACHL_RS16540
ACHL_RS16585	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS16615	SM01130	ACHL_RS16615
ACHL_RS16640	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS16660	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS16785	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS16805	SM01018	B12 binding domain
ACHL_RS16825	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS16830	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS16860	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS16860	SM00895	ACHL_RS16860
ACHL_RS16875	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS16880	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS16915	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS16925	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS16930	SM01130	ACHL_RS16930
ACHL_RS16945	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS16945	SM00448	cheY-homologous receiver domain
ACHL_RS16960	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS16990	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS16995	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS17000	SM01130	ACHL_RS17000
ACHL_RS17070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS17070	SM00895	ACHL_RS17070
ACHL_RS17080	SM00387	Histidine kinase-like ATPases
ACHL_RS17160	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS17175	SM00507	HNH nucleases
ACHL_RS17200	SM00344	helix_turn_helix ASNC type
ACHL_RS17245	SM00862	Transcriptional regulatory protein, C terminal
ACHL_RS17280	SM00331	Sigma factor PP2C-like phosphatases
ACHL_RS17280	SM00448	cheY-homologous receiver domain
ACHL_RS17300	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACHL_RS17300	SM00387	Histidine kinase-like ATPases
ACHL_RS17300	SM00388	His Kinase A (phosphoacceptor) domain
ACHL_RS17310	SM00095	Transthyretin
ACHL_RS17315	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS17340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS17340	SM00895	ACHL_RS17340
ACHL_RS17365	SM00852	Probable molybdopterin binding domain
ACHL_RS17390	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS17395	SM00829	Enoylreductase
ACHL_RS17430	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS17430	SM01086	C-terminal, D2-small domain, of ClpB protein
ACHL_RS17435	SM00020	Trypsin-like serine protease
ACHL_RS17440	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS17525	SM00849	Metallo-beta-lactamase superfamily
ACHL_RS17530	SM00487	DEAD-like helicases superfamily
ACHL_RS17530	SM00490	helicase superfamily c-terminal domain
ACHL_RS17615	SM00487	DEAD-like helicases superfamily
ACHL_RS17615	SM00490	helicase superfamily c-terminal domain
ACHL_RS17630	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS17660	SM01230	ACHL_RS17660
ACHL_RS17665	SM01217	ACHL_RS17665
ACHL_RS17735	SM01217	ACHL_RS17735
ACHL_RS17790	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS17830	SM00984	UDP binding domain
ACHL_RS17840	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS17845	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS17855	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACHL_RS17920	SM00342	helix_turn_helix, arabinose operon control protein
ACHL_RS17925	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ACHL_RS17955	SM01266	ACHL_RS17955
ACHL_RS17970	SM01130	ACHL_RS17970
ACHL_RS17980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS17980	SM00895	ACHL_RS17980
ACHL_RS18025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS18025	SM00895	ACHL_RS18025
ACHL_RS18055	SM00642	Alpha-amylase domain
ACHL_RS18065	SM00642	Alpha-amylase domain
ACHL_RS18085	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS18085	SM00895	ACHL_RS18085
ACHL_RS18130	SM00422	helix_turn_helix, mercury resistance
ACHL_RS18135	SM00271	DnaJ molecular chaperone homology domain
ACHL_RS18155	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACHL_RS18185	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS18210	SM00226	Low molecular weight phosphatase family
ACHL_RS18220	SM00155	Phospholipase D. Active site motifs.
ACHL_RS18260	SM00450	Rhodanese Homology Domain
ACHL_RS18275	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS18290	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS18375	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACHL_RS18375	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACHL_RS18455	SM00062	Bacterial periplasmic substrate-binding proteins
ACHL_RS18525	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS18545	SM00822	ACHL_RS18545
ACHL_RS18570	SM00062	Bacterial periplasmic substrate-binding proteins
ACHL_RS18575	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS18620	SM00411	bacterial (prokaryotic) histone like domain
ACHL_RS18640	SM01038	Beta galactosidase small chain
ACHL_RS18645	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS18685	SM00900	ACHL_RS18685
ACHL_RS18700	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS18715	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS18800	SM00363	S4 RNA-binding domain
ACHL_RS18830	SM00530	Helix-turn-helix XRE-family like proteins 
ACHL_RS18835	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACHL_RS18835	SM00895	ACHL_RS18835
ACHL_RS18860	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS18880	SM00344	helix_turn_helix ASNC type
ACHL_RS18895	SM00344	helix_turn_helix ASNC type
ACHL_RS18920	SM00919	Malic enzyme, NAD binding domain
ACHL_RS18920	SM01274	ACHL_RS18920
ACHL_RS18950	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS18965	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS18975	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19015	SM00640	Glycosyl hydrolases family 32
ACHL_RS19020	SM00640	Glycosyl hydrolases family 32
ACHL_RS19025	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19030	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19055	SM00354	helix_turn _helix lactose operon repressor
ACHL_RS19075	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACHL_RS19075	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACHL_RS19090	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19145	SM00861	Transketolase, pyrimidine binding domain
ACHL_RS19165	SM00656	ACHL_RS19165
ACHL_RS19195	SM00855	Phosphoglycerate mutase family
ACHL_RS19200	SM00220	Serine/Threonine protein kinases, catalytic domain
ACHL_RS19210	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACHL_RS19230	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19255	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS19270	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ACHL_RS19285	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACHL_RS19285	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACHL_RS19290	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS19295	SM00882	Coenzyme A transferase
ACHL_RS19300	SM00882	Coenzyme A transferase
ACHL_RS19320	SM00998	Adenylosuccinate lyase C-terminus
ACHL_RS19345	SM00346	helix_turn_helix isocitrate lyase regulation
ACHL_RS19525	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS19620	SM00421	helix_turn_helix, Lux Regulon
ACHL_RS19620	SM00448	cheY-homologous receiver domain
ACHL_RS19635	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19640	SM00014	Acid phosphatase homologues
ACHL_RS19640	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ACHL_RS19650	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19670	SM00855	Phosphoglycerate mutase family
ACHL_RS19675	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACHL_RS19705	SM00470	ParB-like nuclease domain
ACHL_RS19720	SM00393	Putative single-stranded nucleic acids-binding domain
ACHL_RS19730	SM01234	ACHL_RS19730
ACHL_RS19750	SM00382	ATPases associated with a variety of cellular activities
ACHL_RS19755	SM00760	Bacterial dnaA protein helix-turn-helix domain
ACHL_RS21140	SM00796	Allophanate hydrolase subunit 1
ACHL_RS22230	SM01120	ACHL_RS22230
ACHL_RS23345	SM00855	Phosphoglycerate mutase family
ACHL_RS23375	SM01012	ACHL_RS23375
ACHL_RS23390	SM00641	Glycosyl hydrolases family 25
ACHL_RS23455	SM00903	Flavin reductase like domain
ACHL_RS23485	SM00434	DNA Topoisomerase IV
