locus-tag class description S40542_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix S40542_RS00005 PF11638 DnaA N-terminal domain S40542_RS00005 PF00308 Bacterial dnaA protein S40542_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain S40542_RS00010 PF02767 DNA polymerase III beta subunit, central domain S40542_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain S40542_RS00015 PF02463 RecF/RecN/SMC N terminal domain S40542_RS00020 PF00204 DNA gyrase B S40542_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus S40542_RS00020 PF18053 DNA gyrase B subunit insert domain S40542_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS00020 PF01751 Toprim domain S40542_RS00025 PF02091 Glycyl-tRNA synthetase alpha subunit S40542_RS00030 PF05746 DALR anticodon binding domain S40542_RS00030 PF02092 Glycyl-tRNA synthetase beta subunit S40542_RS00040 PF01206 Sulfurtransferase TusA S40542_RS00045 PF00108 Thiolase, N-terminal domain S40542_RS00045 PF02803 Thiolase, C-terminal domain S40542_RS00050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain S40542_RS00050 PF00378 Enoyl-CoA hydratase/isomerase S40542_RS00050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain S40542_RS00055 PF14718 Soluble lytic murein transglycosylase L domain S40542_RS00055 PF01464 Transglycosylase SLT domain S40542_RS00060 PF00557 Metallopeptidase family M24 S40542_RS00065 PF09186 Domain of unknown function (DUF1949) S40542_RS00065 PF01205 Uncharacterized protein family UPF0029 S40542_RS00070 PF02386 Cation transport protein S40542_RS00080 PF02080 TrkA-C domain S40542_RS00080 PF02254 TrkA-N domain S40542_RS00085 PF01029 NusB family S40542_RS00085 PF01189 16S rRNA methyltransferase RsmB/F S40542_RS00090 PF02911 Formyl transferase, C-terminal domain S40542_RS00090 PF00551 Formyl transferase S40542_RS00095 PF01327 Polypeptide deformylase S40542_RS00105 PF02481 DNA recombination-mediator protein A S40542_RS00105 PF17782 DprA winged helix domain S40542_RS00110 PF04361 Protein of unknown function (DUF494) S40542_RS00115 PF01396 Topoisomerase DNA binding C4 zinc finger S40542_RS00120 PF01300 Telomere recombination S40542_RS00125 PF01218 Coproporphyrinogen III oxidase S40542_RS00130 PF00672 HAMP domain S40542_RS00130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS00140 PF08501 Shikimate dehydrogenase substrate binding domain S40542_RS00140 PF01488 Shikimate / quinate 5-dehydrogenase S40542_RS00140 PF18317 Shikimate 5'-dehydrogenase C-terminal domain S40542_RS00145 PF07369 Protein of unknown function (DUF1488) S40542_RS00150 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS00225 PF04225 Opacity-associated protein A LysM-like domain S40542_RS00225 PF01551 Peptidase family M23 S40542_RS00245 PF00271 Helicase conserved C-terminal domain S40542_RS00245 PF00270 DEAD/DEAH box helicase S40542_RS00250 PF01590 GAF domain S40542_RS00250 PF00360 Phytochrome region S40542_RS00250 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS00250 PF00563 EAL domain S40542_RS00265 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS00265 PF09308 LuxQ, periplasmic S40542_RS00265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS00265 PF00072 Response regulator receiver domain S40542_RS00280 PF00593 TonB dependent receptor S40542_RS00280 PF07715 TonB-dependent Receptor Plug Domain S40542_RS00285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS00285 PF00672 HAMP domain S40542_RS00285 PF12729 Four helix bundle sensory module for signal transduction S40542_RS00295 PF12729 Four helix bundle sensory module for signal transduction S40542_RS00295 PF00672 HAMP domain S40542_RS00295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS00300 PF01252 Signal peptidase (SPase) II S40542_RS00305 PF02627 Carboxymuconolactone decarboxylase family S40542_RS00325 PF07715 TonB-dependent Receptor Plug Domain S40542_RS00325 PF00593 TonB dependent receptor S40542_RS00345 PF00672 HAMP domain S40542_RS00345 PF02743 Cache domain S40542_RS00345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS00350 PF01263 Aldose 1-epimerase S40542_RS00355 PF00072 Response regulator receiver domain S40542_RS00355 PF00158 Sigma-54 interaction domain S40542_RS00355 PF02954 Bacterial regulatory protein, Fis family S40542_RS00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS00360 PF00989 PAS fold S40542_RS00360 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS00375 PF05922 Peptidase inhibitor I9 S40542_RS00375 PF00082 Subtilase family S40542_RS00375 PF04151 Bacterial pre-peptidase C-terminal domain S40542_RS00380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S40542_RS00385 PF02687 FtsX-like permease family S40542_RS00385 PF00005 ABC transporter S40542_RS00385 PF12704 MacB-like periplasmic core domain S40542_RS00400 PF00873 AcrB/AcrD/AcrF family S40542_RS00410 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain S40542_RS00410 PF00326 Prolyl oligopeptidase family S40542_RS00420 PF00210 Ferritin-like domain S40542_RS00435 PF07152 YaeQ protein S40542_RS00440 PF01926 50S ribosome-binding GTPase S40542_RS00445 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS00460 PF00679 Elongation factor G C-terminus S40542_RS00460 PF14492 Elongation Factor G, domain II S40542_RS00460 PF03144 Elongation factor Tu domain 2 S40542_RS00460 PF00009 Elongation factor Tu GTP binding domain S40542_RS00460 PF03764 Elongation factor G, domain IV S40542_RS00470 PF00490 Delta-aminolevulinic acid dehydratase S40542_RS00475 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS00480 PF01026 TatD related DNase S40542_RS00490 PF00902 Sec-independent protein translocase protein (TatC) S40542_RS00495 PF02416 mttA/Hcf106 family S40542_RS00500 PF02416 mttA/Hcf106 family S40542_RS00505 PF03109 ABC1 family S40542_RS00515 PF01209 ubiE/COQ5 methyltransferase family S40542_RS00530 PF01636 Phosphotransferase enzyme family S40542_RS00535 PF01008 Initiation factor 2 subunit family S40542_RS00540 PF00326 Prolyl oligopeptidase family S40542_RS00545 PF03079 ARD/ARD' family S40542_RS00555 PF00596 Class II Aldolase and Adducin N-terminal domain S40542_RS00560 PF00155 Aminotransferase class I and II S40542_RS00565 PF00795 Carbon-nitrogen hydrolase S40542_RS00570 PF02203 Tar ligand binding domain homologue S40542_RS00570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS00570 PF00672 HAMP domain S40542_RS00575 PF01979 Amidohydrolase family S40542_RS00585 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS00585 PF01627 Hpt domain S40542_RS00585 PF00672 HAMP domain S40542_RS00585 PF00072 Response regulator receiver domain S40542_RS00585 PF17149 Periplasmic sensor domain found in signal transduction proteins S40542_RS00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS00595 PF01230 HIT domain S40542_RS00605 PF01433 Peptidase family M1 domain S40542_RS00610 PF01565 FAD binding domain S40542_RS00610 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain S40542_RS00615 PF02237 Biotin protein ligase C terminal domain S40542_RS00615 PF03099 Biotin/lipoate A/B protein ligase family S40542_RS00615 PF08279 HTH domain S40542_RS00620 PF03309 Type III pantothenate kinase S40542_RS00645 PF03143 Elongation factor Tu C-terminal domain S40542_RS00645 PF00009 Elongation factor Tu GTP binding domain S40542_RS00645 PF03144 Elongation factor Tu domain 2 S40542_RS00655 PF00550 Phosphopantetheine attachment site S40542_RS00665 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS00665 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS00670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S40542_RS00670 PF18029 Glyoxalase-like domain S40542_RS00705 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS00710 PF00293 NUDIX domain S40542_RS00715 PF00459 Inositol monophosphatase family S40542_RS00740 PF01244 Membrane dipeptidase (Peptidase family M19) S40542_RS00745 PF06794 Uncharacterised protein family (UPF0270) S40542_RS00750 PF00561 alpha/beta hydrolase fold S40542_RS00760 PF00005 ABC transporter S40542_RS00760 PF12848 ABC transporter S40542_RS00765 PF09526 Probable metal-binding protein (DUF2387) S40542_RS00770 PF04102 SlyX S40542_RS00780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S40542_RS00780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase S40542_RS00785 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ S40542_RS00795 PF01208 Uroporphyrinogen decarboxylase (URO-D) S40542_RS00800 PF17284 Spermidine synthase tetramerisation domain S40542_RS00805 PF17810 Arginine decarboxylase helical bundle domain S40542_RS00805 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain S40542_RS00805 PF17944 Arginine decarboxylase C-terminal helical extension S40542_RS00810 PF01553 Acyltransferase S40542_RS00815 PF01553 Acyltransferase S40542_RS00820 PF00924 Mechanosensitive ion channel S40542_RS00840 PF01022 Bacterial regulatory protein, arsR family S40542_RS00845 PF00873 AcrB/AcrD/AcrF family S40542_RS00860 PF01557 Fumarylacetoacetate (FAA) hydrolase family S40542_RS00870 PF00550 Phosphopantetheine attachment site S40542_RS00870 PF00668 Condensation domain S40542_RS00870 PF13193 AMP-binding enzyme C-terminal domain S40542_RS00870 PF00501 AMP-binding enzyme S40542_RS00875 PF00668 Condensation domain S40542_RS00875 PF00501 AMP-binding enzyme S40542_RS00875 PF00550 Phosphopantetheine attachment site S40542_RS00875 PF13193 AMP-binding enzyme C-terminal domain S40542_RS00880 PF00975 Thioesterase domain S40542_RS00880 PF00550 Phosphopantetheine attachment site S40542_RS00880 PF00668 Condensation domain S40542_RS00880 PF13193 AMP-binding enzyme C-terminal domain S40542_RS00880 PF00501 AMP-binding enzyme S40542_RS00885 PF02222 ATP-grasp domain S40542_RS00885 PF01370 NAD dependent epimerase/dehydratase family S40542_RS00905 PF00005 ABC transporter S40542_RS00910 PF02838 Glycosyl hydrolase family 20, domain 2 S40542_RS00910 PF00728 Glycosyl hydrolase family 20, catalytic domain S40542_RS00910 PF03173 Putative carbohydrate binding domain S40542_RS00915 PF01522 Polysaccharide deacetylase S40542_RS00920 PF00238 Ribosomal protein L14p/L23e S40542_RS00925 PF00467 KOW motif S40542_RS00925 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 S40542_RS00930 PF00673 ribosomal L5P family C-terminus S40542_RS00930 PF00281 Ribosomal protein L5 S40542_RS00935 PF00253 Ribosomal protein S14p/S29e S40542_RS00940 PF00410 Ribosomal protein S8 S40542_RS00945 PF00347 Ribosomal protein L6 S40542_RS00950 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S40542_RS00955 PF03719 Ribosomal protein S5, C-terminal domain S40542_RS00955 PF00333 Ribosomal protein S5, N-terminal domain S40542_RS00960 PF00327 Ribosomal protein L30p/L7e S40542_RS00965 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A S40542_RS00970 PF00344 SecY translocase S40542_RS00975 PF00416 Ribosomal protein S13/S18 S40542_RS00980 PF00411 Ribosomal protein S11 S40542_RS00985 PF00163 Ribosomal protein S4/S9 N-terminal domain S40542_RS00985 PF01479 S4 domain S40542_RS00990 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain S40542_RS00990 PF01000 RNA polymerase Rpb3/RpoA insert domain S40542_RS00990 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain S40542_RS00995 PF01196 Ribosomal protein L17 S40542_RS01025 PF02696 Uncharacterized ACR, YdiU/UPF0061 family S40542_RS01030 PF00664 ABC transporter transmembrane region S40542_RS01030 PF00005 ABC transporter S40542_RS01040 PF06434 Aconitate hydratase 2 N-terminus S40542_RS01040 PF00330 Aconitase family (aconitate hydratase) S40542_RS01040 PF11791 Aconitate B N-terminal domain S40542_RS01060 PF00266 Aminotransferase class-V S40542_RS01070 PF00072 Response regulator receiver domain S40542_RS01070 PF02954 Bacterial regulatory protein, Fis family S40542_RS01070 PF00158 Sigma-54 interaction domain S40542_RS01075 PF00989 PAS fold S40542_RS01075 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS01085 PF00120 Glutamine synthetase, catalytic domain S40542_RS01085 PF03951 Glutamine synthetase, beta-Grasp domain S40542_RS01095 PF12704 MacB-like periplasmic core domain S40542_RS01095 PF02687 FtsX-like permease family S40542_RS01095 PF00005 ABC transporter S40542_RS01105 PF13426 PAS domain S40542_RS01105 PF00989 PAS fold S40542_RS01105 PF13188 PAS domain S40542_RS01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS01105 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS01110 PF02954 Bacterial regulatory protein, Fis family S40542_RS01110 PF00158 Sigma-54 interaction domain S40542_RS01110 PF00072 Response regulator receiver domain S40542_RS01115 PF03144 Elongation factor Tu domain 2 S40542_RS01115 PF00679 Elongation factor G C-terminus S40542_RS01115 PF00009 Elongation factor Tu GTP binding domain S40542_RS01130 PF17176 tRNA-binding domain S40542_RS01130 PF05127 Helicase S40542_RS01130 PF13718 GNAT acetyltransferase 2 S40542_RS01130 PF08351 Domain of unknown function (DUF1726) S40542_RS01135 PF13361 UvrD-like helicase C-terminal domain S40542_RS01135 PF00580 UvrD/REP helicase N-terminal domain S40542_RS01140 PF00072 Response regulator receiver domain S40542_RS01140 PF01584 CheW-like domain S40542_RS01165 PF01553 Acyltransferase S40542_RS01170 PF00338 Ribosomal protein S10p/S20e S40542_RS01175 PF00297 Ribosomal protein L3 S40542_RS01180 PF00573 Ribosomal protein L4/L1 family S40542_RS01185 PF00276 Ribosomal protein L23 S40542_RS01190 PF03947 Ribosomal Proteins L2, C-terminal domain S40542_RS01190 PF00181 Ribosomal Proteins L2, RNA binding domain S40542_RS01195 PF00203 Ribosomal protein S19 S40542_RS01200 PF00237 Ribosomal protein L22p/L17e S40542_RS01205 PF00189 Ribosomal protein S3, C-terminal domain S40542_RS01205 PF07650 KH domain S40542_RS01210 PF00252 Ribosomal protein L16p/L10e S40542_RS01215 PF00831 Ribosomal L29 protein S40542_RS01220 PF00366 Ribosomal protein S17 S40542_RS01235 PF06969 HemN C-terminal domain S40542_RS01235 PF04055 Radical SAM superfamily S40542_RS01240 PF00672 HAMP domain S40542_RS01240 PF16591 Helical bimodular sensor domain S40542_RS01240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS01245 PF02743 Cache domain S40542_RS01245 PF00672 HAMP domain S40542_RS01245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS01255 PF00392 Bacterial regulatory proteins, gntR family S40542_RS01255 PF07702 UTRA domain S40542_RS01260 PF01979 Amidohydrolase family S40542_RS01265 PF12792 CSS motif domain associated with EAL S40542_RS01265 PF00563 EAL domain S40542_RS01275 PF03737 Aldolase/RraA S40542_RS01280 PF01569 PAP2 superfamily S40542_RS01290 PF00672 HAMP domain S40542_RS01290 PF12729 Four helix bundle sensory module for signal transduction S40542_RS01290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS01300 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS01300 PF07724 AAA domain (Cdc48 subfamily) S40542_RS01300 PF10431 C-terminal, D2-small domain, of ClpB protein S40542_RS01305 PF00227 Proteasome subunit S40542_RS01315 PF00271 Helicase conserved C-terminal domain S40542_RS01315 PF00270 DEAD/DEAH box helicase S40542_RS01315 PF17764 3′ DNA-binding domain (3′BD) S40542_RS01315 PF18074 Primosomal protein N C-terminal domain S40542_RS01315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain S40542_RS01320 PF01197 Ribosomal protein L31 S40542_RS01325 PF00390 Malic enzyme, N-terminal domain S40542_RS01325 PF03949 Malic enzyme, NAD binding domain S40542_RS01330 PF01340 Met Apo-repressor, MetJ S40542_RS01335 PF01053 Cys/Met metabolism PLP-dependent enzyme S40542_RS01340 PF03447 Homoserine dehydrogenase, NAD binding domain S40542_RS01340 PF00742 Homoserine dehydrogenase S40542_RS01340 PF00696 Amino acid kinase family S40542_RS01345 PF17092 Penicillin-binding protein OB-like domain S40542_RS01345 PF00912 Transglycosylase S40542_RS01345 PF00905 Penicillin binding protein transpeptidase domain S40542_RS01350 PF11104 Type IV pilus assembly protein PilM; S40542_RS01360 PF04350 Pilus assembly protein, PilO S40542_RS01370 PF11741 AMIN domain S40542_RS01370 PF00263 Bacterial type II and III secretion system protein S40542_RS01370 PF03958 Bacterial type II/III secretion system short domain S40542_RS01370 PF07660 Secretin and TonB N terminus short domain S40542_RS01375 PF01202 Shikimate kinase S40542_RS01380 PF01761 3-dehydroquinate synthase S40542_RS01390 PF02086 D12 class N6 adenine-specific DNA methyltransferase S40542_RS01405 PF00834 Ribulose-phosphate 3 epimerase family S40542_RS01410 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS01415 PF00579 tRNA synthetases class I (W and Y) S40542_RS01430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain S40542_RS01430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain S40542_RS01435 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal S40542_RS01435 PF14602 Hexapeptide repeat of succinyl-transferase S40542_RS01435 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS01440 PF00701 Dihydrodipicolinate synthetase family S40542_RS01445 PF00072 Response regulator receiver domain S40542_RS01445 PF09308 LuxQ, periplasmic S40542_RS01445 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS01455 PF00205 Thiamine pyrophosphate enzyme, central domain S40542_RS01455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S40542_RS01455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S40542_RS01465 PF01063 Amino-transferase class IV S40542_RS01470 PF00920 Dehydratase family S40542_RS01475 PF00585 C-terminal regulatory domain of Threonine dehydratase S40542_RS01475 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS01490 PF00484 Carbonic anhydrase S40542_RS01495 PF04380 Membrane fusogenic activity S40542_RS01500 PF13361 UvrD-like helicase C-terminal domain S40542_RS01500 PF00580 UvrD/REP helicase N-terminal domain S40542_RS01505 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS01505 PF03707 Bacterial signalling protein N terminal repeat S40542_RS01505 PF00563 EAL domain S40542_RS01510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S40542_RS01520 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S40542_RS01520 PF01367 5'-3' exonuclease, C-terminal SAM fold S40542_RS01520 PF00476 DNA polymerase family A S40542_RS01520 PF01612 3'-5' exonuclease S40542_RS01535 PF01926 50S ribosome-binding GTPase S40542_RS01540 PF00034 Cytochrome c S40542_RS01555 PF10675 Protein of unknown function (DUF2489) S40542_RS01560 PF00117 Glutamine amidotransferase class-I S40542_RS01570 PF00202 Aminotransferase class-III S40542_RS01575 PF04958 Arginine N-succinyltransferase beta subunit S40542_RS01580 PF00171 Aldehyde dehydrogenase family S40542_RS01590 PF02566 OsmC-like protein S40542_RS01595 PF02675 S-adenosylmethionine decarboxylase S40542_RS01615 PF01964 Radical SAM ThiC family S40542_RS01615 PF13667 ThiC-associated domain S40542_RS01620 PF01266 FAD dependent oxidoreductase S40542_RS01630 PF05690 Thiazole biosynthesis protein ThiG S40542_RS01635 PF02581 Thiamine monophosphate synthase S40542_RS01640 PF00899 ThiF family S40542_RS01645 PF02666 Phosphatidylserine decarboxylase S40542_RS01650 PF03193 RsgA GTPase S40542_RS01655 PF00929 Exonuclease S40542_RS01690 PF01250 Ribosomal protein S6 S40542_RS01695 PF00436 Single-strand binding protein family S40542_RS01700 PF01084 Ribosomal protein S18 S40542_RS01705 PF03948 Ribosomal protein L9, C-terminal domain S40542_RS01705 PF01281 Ribosomal protein L9, N-terminal domain S40542_RS01710 PF07963 Prokaryotic N-terminal methylation motif S40542_RS01710 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor S40542_RS01715 PF00114 Pilin (bacterial filament) S40542_RS01715 PF07963 Prokaryotic N-terminal methylation motif S40542_RS01750 PF00772 DnaB-like helicase N terminal domain S40542_RS01750 PF03796 DnaB-like helicase C terminal domain S40542_RS01755 PF00842 Alanine racemase, C-terminal domain S40542_RS01755 PF01168 Alanine racemase, N-terminal domain S40542_RS01760 PF01894 Uncharacterised protein family UPF0047 S40542_RS01770 PF01475 Ferric uptake regulator family S40542_RS01775 PF03707 Bacterial signalling protein N terminal repeat S40542_RS01775 PF00563 EAL domain S40542_RS01775 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS01780 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS01780 PF16197 Ketoacyl-synthetase C-terminal extension S40542_RS01780 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS01780 PF00668 Condensation domain S40542_RS01780 PF13193 AMP-binding enzyme C-terminal domain S40542_RS01780 PF00550 Phosphopantetheine attachment site S40542_RS01780 PF00202 Aminotransferase class-III S40542_RS01780 PF00501 AMP-binding enzyme S40542_RS01785 PF00975 Thioesterase domain S40542_RS01785 PF00550 Phosphopantetheine attachment site S40542_RS01785 PF00501 AMP-binding enzyme S40542_RS01785 PF13193 AMP-binding enzyme C-terminal domain S40542_RS01785 PF00668 Condensation domain S40542_RS01790 PF00668 Condensation domain S40542_RS01790 PF00550 Phosphopantetheine attachment site S40542_RS01790 PF07993 Male sterility protein S40542_RS01790 PF00501 AMP-binding enzyme S40542_RS01790 PF13193 AMP-binding enzyme C-terminal domain S40542_RS01810 PF00005 ABC transporter S40542_RS01810 PF00664 ABC transporter transmembrane region S40542_RS01825 PF02785 Biotin carboxylase C-terminal domain S40542_RS01825 PF00289 Biotin carboxylase, N-terminal domain S40542_RS01825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S40542_RS01830 PF00364 Biotin-requiring enzyme S40542_RS01835 PF01220 Dehydroquinase class II S40542_RS01840 PF11412 Disulphide bond corrector protein DsbC S40542_RS01840 PF02683 Cytochrome C biogenesis protein transmembrane region S40542_RS01845 PF03091 CutA1 divalent ion tolerance protein S40542_RS01855 PF00166 Chaperonin 10 Kd subunit S40542_RS01860 PF00118 TCP-1/cpn60 chaperonin family S40542_RS01880 PF00486 Transcriptional regulatory protein, C terminal S40542_RS01905 PF02790 Cytochrome C oxidase subunit II, transmembrane domain S40542_RS01905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain S40542_RS01910 PF00115 Cytochrome C and Quinol oxidase polypeptide I S40542_RS01915 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 S40542_RS01920 PF00510 Cytochrome c oxidase subunit III S40542_RS01940 PF01040 UbiA prenyltransferase family S40542_RS01945 PF02630 SCO1/SenC S40542_RS01955 PF00072 Response regulator receiver domain S40542_RS01960 PF01584 CheW-like domain S40542_RS01960 PF09078 CheY binding S40542_RS01960 PF02895 Signal transducing histidine kinase, homodimeric domain S40542_RS01960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS01960 PF01627 Hpt domain S40542_RS01965 PF01584 CheW-like domain S40542_RS01970 PF02203 Tar ligand binding domain homologue S40542_RS01970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS01970 PF00672 HAMP domain S40542_RS01975 PF01739 CheR methyltransferase, SAM binding domain S40542_RS01975 PF03705 CheR methyltransferase, all-alpha domain S40542_RS01980 PF03975 CheD chemotactic sensory transduction S40542_RS01985 PF00072 Response regulator receiver domain S40542_RS01985 PF01339 CheB methylesterase S40542_RS01995 PF01554 MatE S40542_RS02000 PF01106 NifU-like domain S40542_RS02000 PF01521 Iron-sulphur cluster biosynthesis S40542_RS02010 PF00156 Phosphoribosyl transferase domain S40542_RS02015 PF00561 alpha/beta hydrolase fold S40542_RS02030 PF16921 Tex protein YqgF-like domain S40542_RS02030 PF09371 Tex-like protein N-terminal domain S40542_RS02030 PF00575 S1 RNA binding domain S40542_RS02030 PF17674 HHH domain S40542_RS02035 PF03449 Transcription elongation factor, N-terminal S40542_RS02035 PF01272 Transcription elongation factor, GreA/GreB, C-term S40542_RS02040 PF00072 Response regulator receiver domain S40542_RS02040 PF00486 Transcriptional regulatory protein, C terminal S40542_RS02045 PF00672 HAMP domain S40542_RS02045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS02045 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS02050 PF01293 Phosphoenolpyruvate carboxykinase S40542_RS02055 PF01430 Hsp33 protein S40542_RS02060 PF01479 S4 domain S40542_RS02065 PF11356 Type II secretion system protein C S40542_RS02070 PF03958 Bacterial type II/III secretion system short domain S40542_RS02070 PF00263 Bacterial type II and III secretion system protein S40542_RS02075 PF00437 Type II/IV secretion system protein S40542_RS02080 PF00482 Type II secretion system (T2SS), protein F S40542_RS02085 PF08334 Type II secretion system (T2SS), protein G S40542_RS02085 PF07963 Prokaryotic N-terminal methylation motif S40542_RS02090 PF07963 Prokaryotic N-terminal methylation motif S40542_RS02090 PF12019 Type II transport protein GspH S40542_RS02095 PF02501 Type II secretion system (T2SS), protein I S40542_RS02095 PF07963 Prokaryotic N-terminal methylation motif S40542_RS02100 PF11612 Type II secretion system (T2SS), protein J S40542_RS02100 PF07963 Prokaryotic N-terminal methylation motif S40542_RS02105 PF03934 Type II secretion system (T2SS), protein K S40542_RS02110 PF05134 Type II secretion system (T2SS), protein L S40542_RS02110 PF12693 GspL periplasmic domain S40542_RS02140 PF13746 4Fe-4S dicluster domain S40542_RS02140 PF12801 4Fe-4S binding domain S40542_RS02140 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase S40542_RS02145 PF01636 Phosphotransferase enzyme family S40542_RS02150 PF01323 DSBA-like thioredoxin domain S40542_RS02160 PF05958 tRNA (Uracil-5-)-methyltransferase S40542_RS02170 PF01177 Asp/Glu/Hydantoin racemase S40542_RS02175 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) S40542_RS02205 PF01548 Transposase S40542_RS02205 PF02371 Transposase IS116/IS110/IS902 family S40542_RS02230 PF02371 Transposase IS116/IS110/IS902 family S40542_RS02230 PF01548 Transposase S40542_RS02240 PF12704 MacB-like periplasmic core domain S40542_RS02240 PF02687 FtsX-like permease family S40542_RS02240 PF00005 ABC transporter S40542_RS02245 PF00005 ABC transporter S40542_RS02250 PF01259 SAICAR synthetase S40542_RS02255 PF00563 EAL domain S40542_RS02255 PF03707 Bacterial signalling protein N terminal repeat S40542_RS02255 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS02260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) S40542_RS02280 PF02653 Branched-chain amino acid transport system / permease component S40542_RS02285 PF00005 ABC transporter S40542_RS02295 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain S40542_RS02310 PF00675 Insulinase (Peptidase family M16) S40542_RS02310 PF05193 Peptidase M16 inactive domain S40542_RS02315 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS02315 PF06426 Serine acetyltransferase, N-terminal S40542_RS02325 PF02601 Exonuclease VII, large subunit S40542_RS02325 PF13742 OB-fold nucleic acid binding domain S40542_RS02330 PF00571 CBS domain S40542_RS02330 PF00478 IMP dehydrogenase / GMP reductase domain S40542_RS02335 PF00117 Glutamine amidotransferase class-I S40542_RS02335 PF00958 GMP synthase C terminal domain S40542_RS02335 PF02540 NAD synthase S40542_RS02350 PF00583 Acetyltransferase (GNAT) family S40542_RS02355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS02355 PF09308 LuxQ, periplasmic S40542_RS02355 PF00072 Response regulator receiver domain S40542_RS02355 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS02365 PF08207 Elongation factor P (EF-P) KOW-like domain S40542_RS02365 PF01132 Elongation factor P (EF-P) OB domain S40542_RS02365 PF09285 Elongation factor P, C-terminal S40542_RS02380 PF00975 Thioesterase domain S40542_RS02385 PF16658 Class II release factor RF3, C-terminal domain S40542_RS02385 PF03144 Elongation factor Tu domain 2 S40542_RS02385 PF00009 Elongation factor Tu GTP binding domain S40542_RS02390 PF03485 Arginyl tRNA synthetase N terminal domain S40542_RS02390 PF05746 DALR anticodon binding domain S40542_RS02390 PF00750 tRNA synthetases class I (R) S40542_RS02395 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region S40542_RS02395 PF01243 Pyridoxamine 5'-phosphate oxidase S40542_RS02400 PF01026 TatD related DNase S40542_RS02410 PF18429 Domain of unknown function (DUF5609) S40542_RS02415 PF07729 FCD domain S40542_RS02415 PF00392 Bacterial regulatory proteins, gntR family S40542_RS02420 PF00456 Transketolase, thiamine diphosphate binding domain S40542_RS02420 PF17831 Pyruvate dehydrogenase E1 component middle domain S40542_RS02425 PF02817 e3 binding domain S40542_RS02425 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) S40542_RS02425 PF00364 Biotin-requiring enzyme S40542_RS02430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S40542_RS02430 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS02445 PF12627 Probable RNA and SrmB- binding site of polymerase A S40542_RS02445 PF01966 HD domain S40542_RS02445 PF01743 Poly A polymerase head domain S40542_RS02450 PF01471 Putative peptidoglycan binding domain S40542_RS02450 PF13401 AAA domain S40542_RS02460 PF11871 Domain of unknown function (DUF3391) S40542_RS02460 PF01966 HD domain S40542_RS02465 PF01546 Peptidase family M20/M25/M40 S40542_RS02465 PF07687 Peptidase dimerisation domain S40542_RS02470 PF00849 RNA pseudouridylate synthase S40542_RS02475 PF00455 DeoR C terminal sensor domain S40542_RS02475 PF08220 DeoR-like helix-turn-helix domain S40542_RS02480 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS02495 PF00271 Helicase conserved C-terminal domain S40542_RS02495 PF18337 RapA N-terminal Tudor like domain S40542_RS02495 PF12137 RNA polymerase recycling family C-terminal S40542_RS02495 PF00176 SNF2 family N-terminal domain S40542_RS02495 PF18339 RapA N-terminal Tudor like domain 1 S40542_RS02500 PF13638 PIN domain S40542_RS02500 PF02562 PhoH-like protein S40542_RS02505 PF00672 HAMP domain S40542_RS02505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS02505 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS02505 PF01627 Hpt domain S40542_RS02505 PF00072 Response regulator receiver domain S40542_RS02505 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS02510 PF00072 Response regulator receiver domain S40542_RS02520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S40542_RS02520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S40542_RS02525 PF13411 MerR HTH family regulatory protein S40542_RS02530 PF03773 Predicted permease S40542_RS02545 PF03695 Uncharacterised protein family (UPF0149) S40542_RS02550 PF00557 Metallopeptidase family M24 S40542_RS02550 PF05195 Aminopeptidase P, N-terminal domain S40542_RS02555 PF01494 FAD binding domain S40542_RS02560 PF01494 FAD binding domain S40542_RS02565 PF03466 LysR substrate binding domain S40542_RS02565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS02570 PF08669 Glycine cleavage T-protein C-terminal barrel domain S40542_RS02570 PF01571 Aminomethyltransferase folate-binding domain S40542_RS02575 PF08669 Glycine cleavage T-protein C-terminal barrel domain S40542_RS02575 PF01571 Aminomethyltransferase folate-binding domain S40542_RS02580 PF01597 Glycine cleavage H-protein S40542_RS02585 PF02347 Glycine cleavage system P-protein S40542_RS02605 PF18500 CadC C-terminal domain 1 S40542_RS02605 PF00486 Transcriptional regulatory protein, C terminal S40542_RS02625 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS02625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS02625 PF00497 Bacterial extracellular solute-binding proteins, family 3 S40542_RS02630 PF11849 Domain of unknown function (DUF3369) S40542_RS02665 PF00005 ABC transporter S40542_RS02665 PF00664 ABC transporter transmembrane region S40542_RS02670 PF17284 Spermidine synthase tetramerisation domain S40542_RS02675 PF02675 S-adenosylmethionine decarboxylase S40542_RS02695 PF00472 RF-1 domain S40542_RS02725 PF01483 Proprotein convertase P-domain S40542_RS02725 PF00082 Subtilase family S40542_RS02745 PF17200 Single Cache domain 2 S40542_RS02745 PF00672 HAMP domain S40542_RS02745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS02755 PF00211 Adenylate and Guanylate cyclase catalytic domain S40542_RS02760 PF00080 Copper/zinc superoxide dismutase (SODC) S40542_RS02795 PF01638 HxlR-like helix-turn-helix S40542_RS02800 PF00375 Sodium:dicarboxylate symporter family S40542_RS02810 PF07730 Histidine kinase S40542_RS02815 PF00196 Bacterial regulatory proteins, luxR family S40542_RS02815 PF00072 Response regulator receiver domain S40542_RS02830 PF00462 Glutaredoxin S40542_RS02840 PF00696 Amino acid kinase family S40542_RS02840 PF00583 Acetyltransferase (GNAT) family S40542_RS02865 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit S40542_RS02880 PF02417 Chromate transporter S40542_RS02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS02885 PF03466 LysR substrate binding domain S40542_RS02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS02895 PF03466 LysR substrate binding domain S40542_RS02910 PF00730 HhH-GPD superfamily base excision DNA repair protein S40542_RS02910 PF10576 Iron-sulfur binding domain of endonuclease III S40542_RS02910 PF00633 Helix-hairpin-helix motif S40542_RS02930 PF02472 Biopolymer transport protein ExbD/TolR S40542_RS02940 PF00144 Beta-lactamase S40542_RS02950 PF02872 5'-nucleotidase, C-terminal domain S40542_RS02950 PF00149 Calcineurin-like phosphoesterase S40542_RS02985 PF07676 WD40-like Beta Propeller Repeat S40542_RS02985 PF00326 Prolyl oligopeptidase family S40542_RS02990 PF03649 Uncharacterised protein family (UPF0014) S40542_RS03020 PF03889 Alternative ribosome-rescue factor A S40542_RS03030 PF01758 Sodium Bile acid symporter family S40542_RS03035 PF01235 Sodium:alanine symporter family S40542_RS03040 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS03045 PF00664 ABC transporter transmembrane region S40542_RS03045 PF00005 ABC transporter S40542_RS03065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS03065 PF03466 LysR substrate binding domain S40542_RS03070 PF00128 Alpha amylase, catalytic domain S40542_RS03070 PF09154 Domain of unknown function (DUF1939) S40542_RS03080 PF00072 Response regulator receiver domain S40542_RS03085 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS03085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS03085 PF00672 HAMP domain S40542_RS03085 PF01627 Hpt domain S40542_RS03085 PF00072 Response regulator receiver domain S40542_RS03105 PF07676 WD40-like Beta Propeller Repeat S40542_RS03105 PF00326 Prolyl oligopeptidase family S40542_RS03120 PF00392 Bacterial regulatory proteins, gntR family S40542_RS03120 PF07729 FCD domain S40542_RS03125 PF01042 Endoribonuclease L-PSP S40542_RS03135 PF06832 Penicillin-Binding Protein C-terminus Family S40542_RS03135 PF00905 Penicillin binding protein transpeptidase domain S40542_RS03135 PF00912 Transglycosylase S40542_RS03140 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain S40542_RS03140 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain S40542_RS03140 PF17962 Bacterial macroglobulin domain 6 S40542_RS03140 PF11974 Bacterial alpha-2-macroglobulin MG3 domain S40542_RS03140 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain S40542_RS03140 PF07703 Alpha-2-macroglobulin bait region domain S40542_RS03140 PF00207 Alpha-2-macroglobulin family S40542_RS03140 PF01835 MG2 domain S40542_RS03140 PF07678 A-macroglobulin TED domain S40542_RS03150 PF00756 Putative esterase S40542_RS03150 PF01476 LysM domain S40542_RS03155 PF03466 LysR substrate binding domain S40542_RS03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS03160 PF03884 DNA gyrase inhibitor YacG S40542_RS03165 PF00437 Type II/IV secretion system protein S40542_RS03165 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain S40542_RS03170 PF01121 Dephospho-CoA kinase S40542_RS03175 PF06750 Bacterial Peptidase A24 N-terminal domain S40542_RS03175 PF01478 Type IV leader peptidase family S40542_RS03180 PF00482 Type II secretion system (T2SS), protein F S40542_RS03185 PF00114 Pilin (bacterial filament) S40542_RS03185 PF07963 Prokaryotic N-terminal methylation motif S40542_RS03190 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain S40542_RS03190 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain S40542_RS03195 PF01510 N-acetylmuramoyl-L-alanine amidase S40542_RS03200 PF17113 Regulatory signalling modulator protein AmpE S40542_RS03210 PF18073 Rubredoxin metal binding domain S40542_RS03220 PF01476 LysM domain S40542_RS03220 PF08525 Opacity-associated protein A N-terminal motif S40542_RS03220 PF01551 Peptidase family M23 S40542_RS03225 PF00579 tRNA synthetases class I (W and Y) S40542_RS03235 PF01048 Phosphorylase superfamily S40542_RS03245 PF02649 Type I GTP cyclohydrolase folE2 S40542_RS03250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS03250 PF18415 Histidine kinase receptor ArcB trans-membrane domain S40542_RS03250 PF01627 Hpt domain S40542_RS03250 PF00072 Response regulator receiver domain S40542_RS03250 PF00989 PAS fold S40542_RS03250 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS03255 PF00486 Transcriptional regulatory protein, C terminal S40542_RS03255 PF00072 Response regulator receiver domain S40542_RS03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS03265 PF00497 Bacterial extracellular solute-binding proteins, family 3 S40542_RS03265 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS03270 PF05175 Methyltransferase small domain S40542_RS03270 PF08468 Methyltransferase small domain N-terminal S40542_RS03275 PF02390 Putative methyltransferase S40542_RS03280 PF14815 NUDIX domain S40542_RS03280 PF10576 Iron-sulfur binding domain of endonuclease III S40542_RS03280 PF00633 Helix-hairpin-helix motif S40542_RS03280 PF00730 HhH-GPD superfamily base excision DNA repair protein S40542_RS03285 PF04362 Bacterial Fe(2+) trafficking S40542_RS03290 PF00348 Polyprenyl synthetase S40542_RS03295 PF00829 Ribosomal prokaryotic L21 protein S40542_RS03300 PF01016 Ribosomal L27 protein S40542_RS03305 PF01018 GTP1/OBG S40542_RS03305 PF01926 50S ribosome-binding GTPase S40542_RS03310 PF00186 Dihydrofolate reductase S40542_RS03320 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein S40542_RS03325 PF00483 Nucleotidyl transferase S40542_RS03340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S40542_RS03345 PF00271 Helicase conserved C-terminal domain S40542_RS03345 PF17191 RecG wedge domain S40542_RS03345 PF00270 DEAD/DEAH box helicase S40542_RS03350 PF00588 SpoU rRNA Methylase family S40542_RS03350 PF12105 SpoU, rRNA methylase, C-terminal S40542_RS03355 PF01037 Lrp/AsnC ligand binding domain S40542_RS03355 PF13404 AsnC-type helix-turn-helix domain S40542_RS03360 PF03590 Aspartate-ammonia ligase S40542_RS03370 PF01042 Endoribonuclease L-PSP S40542_RS03375 PF13291 ACT domain S40542_RS03375 PF04607 Region found in RelA / SpoT proteins S40542_RS03375 PF02824 TGS domain S40542_RS03380 PF01192 RNA polymerase Rpb6 S40542_RS03385 PF00625 Guanylate kinase S40542_RS03390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS03390 PF08447 PAS fold S40542_RS03390 PF13426 PAS domain S40542_RS03405 PF01527 Transposase S40542_RS03410 PF00106 short chain dehydrogenase S40542_RS03470 PF01527 Transposase S40542_RS03490 PF08340 Domain of unknown function (DUF1732) S40542_RS03490 PF03755 YicC-like family, N-terminal region S40542_RS03495 PF03725 3' exoribonuclease family, domain 2 S40542_RS03495 PF01138 3' exoribonuclease family, domain 1 S40542_RS03500 PF00156 Phosphoribosyl transferase domain S40542_RS03505 PF08245 Mur ligase middle domain S40542_RS03505 PF02875 Mur ligase family, glutamate ligase domain S40542_RS03505 PF01225 Mur ligase family, catalytic domain S40542_RS03510 PF02441 Flavoprotein S40542_RS03515 PF00005 ABC transporter S40542_RS03520 PF01061 ABC-2 type transporter S40542_RS03530 PF02390 Putative methyltransferase S40542_RS03540 PF00282 Pyridoxal-dependent decarboxylase conserved domain S40542_RS03545 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS03545 PF00072 Response regulator receiver domain S40542_RS03550 PF00072 Response regulator receiver domain S40542_RS03550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS03550 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS03550 PF09456 RcsC Alpha-Beta-Loop (ABL) S40542_RS03560 PF00474 Sodium:solute symporter family S40542_RS03565 PF00571 CBS domain S40542_RS03575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain S40542_RS03575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain S40542_RS03580 PF00162 Phosphoglycerate kinase S40542_RS03585 PF01116 Fructose-bisphosphate aldolase class-II S40542_RS03595 PF00486 Transcriptional regulatory protein, C terminal S40542_RS03595 PF00072 Response regulator receiver domain S40542_RS03600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS03600 PF00989 PAS fold S40542_RS03600 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS03600 PF11808 Phosphate regulon sensor protein PhoR S40542_RS03605 PF12849 PBP superfamily domain S40542_RS03615 PF02569 Pantoate-beta-alanine ligase S40542_RS03620 PF02548 Ketopantoate hydroxymethyltransferase S40542_RS03625 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) S40542_RS03630 PF12627 Probable RNA and SrmB- binding site of polymerase A S40542_RS03630 PF12626 Polymerase A arginine-rich C-terminus S40542_RS03630 PF01743 Poly A polymerase head domain S40542_RS03635 PF00749 tRNA synthetases class I (E and Q), catalytic domain S40542_RS03640 PF01258 Prokaryotic dksA/traR C4-type zinc finger S40542_RS03645 PF17746 SfsA N-terminal OB domain S40542_RS03645 PF03749 Sugar fermentation stimulation protein RE domain S40542_RS03650 PF00883 Cytosol aminopeptidase family, catalytic domain S40542_RS03650 PF12404 Peptidase S40542_RS03655 PF00571 CBS domain S40542_RS03665 PF13180 PDZ domain S40542_RS03665 PF03572 Peptidase family S41 S40542_RS03670 PF01551 Peptidase family M23 S40542_RS03675 PF06415 BPG-independent PGAM N-terminus (iPGM_N) S40542_RS03675 PF01676 Metalloenzyme superfamily S40542_RS03680 PF00581 Rhodanese-like domain S40542_RS03685 PF00462 Glutaredoxin S40542_RS03690 PF02556 Preprotein translocase subunit SecB S40542_RS03695 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus S40542_RS03695 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus S40542_RS03705 PF16177 Acetyl-coenzyme A synthetase N-terminus S40542_RS03705 PF00501 AMP-binding enzyme S40542_RS03705 PF13193 AMP-binding enzyme C-terminal domain S40542_RS03710 PF00072 Response regulator receiver domain S40542_RS03710 PF00196 Bacterial regulatory proteins, luxR family S40542_RS03715 PF00551 Formyl transferase S40542_RS03715 PF01842 ACT domain S40542_RS03740 PF00797 N-acetyltransferase S40542_RS03750 PF01047 MarR family S40542_RS03755 PF02028 BCCT, betaine/carnitine/choline family transporter S40542_RS03780 PF03466 LysR substrate binding domain S40542_RS03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS03795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S40542_RS03795 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS03800 PF01432 Peptidase family M3 S40542_RS03805 PF00072 Response regulator receiver domain S40542_RS03805 PF00486 Transcriptional regulatory protein, C terminal S40542_RS03810 PF04445 Putative SAM-dependent methyltransferase S40542_RS03815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS03820 PF04151 Bacterial pre-peptidase C-terminal domain S40542_RS03820 PF00082 Subtilase family S40542_RS03845 PF02472 Biopolymer transport protein ExbD/TolR S40542_RS03850 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS03855 PF03544 Gram-negative bacterial TonB protein C-terminal S40542_RS03875 PF07660 Secretin and TonB N terminus short domain S40542_RS03875 PF00593 TonB dependent receptor S40542_RS03875 PF07715 TonB-dependent Receptor Plug Domain S40542_RS03900 PF14376 Haem-binding domain S40542_RS03900 PF00034 Cytochrome c S40542_RS03900 PF03150 Di-haem cytochrome c peroxidase S40542_RS03905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS03905 PF01627 Hpt domain S40542_RS03905 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS03905 PF00672 HAMP domain S40542_RS03905 PF00072 Response regulator receiver domain S40542_RS03905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS03910 PF00106 short chain dehydrogenase S40542_RS03935 PF04542 Sigma-70 region 2 S40542_RS03935 PF08281 Sigma-70, region 4 S40542_RS03940 PF01613 Flavin reductase like domain S40542_RS03945 PF00082 Subtilase family S40542_RS03965 PF03783 Curli production assembly/transport component CsgG S40542_RS03970 PF00072 Response regulator receiver domain S40542_RS03970 PF00196 Bacterial regulatory proteins, luxR family S40542_RS03975 PF01551 Peptidase family M23 S40542_RS03980 PF01136 Peptidase family U32 S40542_RS03980 PF16325 Peptidase family U32 C-terminal domain S40542_RS03985 PF00334 Nucleoside diphosphate kinase S40542_RS03990 PF04055 Radical SAM superfamily S40542_RS04000 PF13464 Domain of unknown function (DUF4115) S40542_RS04005 PF04551 GcpE protein S40542_RS04010 PF03129 Anticodon binding domain S40542_RS04010 PF13393 Histidyl-tRNA synthetase S40542_RS04015 PF09976 Tetratricopeptide repeat-like domain S40542_RS04020 PF13360 PQQ-like domain S40542_RS04025 PF01926 50S ribosome-binding GTPase S40542_RS04025 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal S40542_RS04050 PF00255 Glutathione peroxidase S40542_RS04055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS04055 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS04055 PF00072 Response regulator receiver domain S40542_RS04055 PF09308 LuxQ, periplasmic S40542_RS04060 PF00072 Response regulator receiver domain S40542_RS04065 PF08331 Domain of unknown function (DUF1730) S40542_RS04070 PF03853 YjeF-related protein N-terminus S40542_RS04070 PF01256 Carbohydrate kinase S40542_RS04075 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE S40542_RS04080 PF01520 N-acetylmuramoyl-L-alanine amidase S40542_RS04085 PF08676 MutL C terminal dimerisation domain S40542_RS04085 PF01119 DNA mismatch repair protein, C-terminal domain S40542_RS04095 PF17209 Hfq protein S40542_RS04100 PF01926 50S ribosome-binding GTPase S40542_RS04100 PF13167 GTP-binding GTPase N-terminal S40542_RS04100 PF16360 GTP-binding GTPase Middle Region S40542_RS04105 PF12221 Bacterial membrane protein N terminal S40542_RS04105 PF01145 SPFH domain / Band 7 family S40542_RS04110 PF01145 SPFH domain / Band 7 family S40542_RS04115 PF00709 Adenylosuccinate synthetase S40542_RS04120 PF08238 Sel1 repeat S40542_RS04125 PF00999 Sodium/hydrogen exchanger family S40542_RS04125 PF03471 Transporter associated domain S40542_RS04130 PF00171 Aldehyde dehydrogenase family S40542_RS04160 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) S40542_RS04170 PF00596 Class II Aldolase and Adducin N-terminal domain S40542_RS04175 PF13378 Enolase C-terminal domain-like S40542_RS04175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain S40542_RS04180 PF00459 Inositol monophosphatase family S40542_RS04185 PF00588 SpoU rRNA Methylase family S40542_RS04190 PF02082 Transcriptional regulator S40542_RS04195 PF00266 Aminotransferase class-V S40542_RS04200 PF01592 NifU-like N terminal domain S40542_RS04205 PF01521 Iron-sulphur cluster biosynthesis S40542_RS04210 PF07743 HSCB C-terminal oligomerisation domain S40542_RS04215 PF00012 Hsp70 protein S40542_RS04220 PF00111 2Fe-2S iron-sulfur cluster binding domain S40542_RS04225 PF00171 Aldehyde dehydrogenase family S40542_RS04235 PF01636 Phosphotransferase enzyme family S40542_RS04240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S40542_RS04260 PF01636 Phosphotransferase enzyme family S40542_RS04285 PF16124 RecQ zinc-binding S40542_RS04285 PF00270 DEAD/DEAH box helicase S40542_RS04285 PF00570 HRDC domain S40542_RS04285 PF00271 Helicase conserved C-terminal domain S40542_RS04285 PF09382 RQC domain S40542_RS04290 PF00892 EamA-like transporter family S40542_RS04295 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS04295 PF00072 Response regulator receiver domain S40542_RS04300 PF04219 Protein of unknown function, DUF S40542_RS04305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS04305 PF03466 LysR substrate binding domain S40542_RS04310 PF00267 Gram-negative porin S40542_RS04340 PF01590 GAF domain S40542_RS04340 PF00158 Sigma-54 interaction domain S40542_RS04350 PF04851 Type III restriction enzyme, res subunit S40542_RS04365 PF12161 HsdM N-terminal domain S40542_RS04365 PF02384 N-6 DNA Methylase S40542_RS04370 PF01420 Type I restriction modification DNA specificity domain S40542_RS04385 PF11867 Domain of unknown function (DUF3387) S40542_RS04385 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) S40542_RS04385 PF18766 SWI2/SNF2 ATPase S40542_RS04420 PF07724 AAA domain (Cdc48 subfamily) S40542_RS04420 PF10431 C-terminal, D2-small domain, of ClpB protein S40542_RS04420 PF06689 ClpX C4-type zinc finger S40542_RS04440 PF04977 Septum formation initiator S40542_RS04445 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase S40542_RS04450 PF02542 YgbB family S40542_RS04455 PF01142 tRNA pseudouridine synthase D (TruD) S40542_RS04460 PF01975 Survival protein SurE S40542_RS04470 PF01551 Peptidase family M23 S40542_RS04470 PF01476 LysM domain S40542_RS04475 PF04545 Sigma-70, region 4 S40542_RS04475 PF00140 Sigma-70 factor, region 1.2 S40542_RS04475 PF04539 Sigma-70 region 3 S40542_RS04475 PF04542 Sigma-70 region 2 S40542_RS04480 PF10458 Valyl tRNA synthetase tRNA binding arm S40542_RS04480 PF08264 Anticodon-binding domain of tRNA S40542_RS04480 PF00133 tRNA synthetases class I (I, L, M and V) S40542_RS04485 PF04364 DNA polymerase III chi subunit, HolC S40542_RS04490 PF02789 Cytosol aminopeptidase family, N-terminal domain S40542_RS04490 PF00883 Cytosol aminopeptidase family, catalytic domain S40542_RS04495 PF03739 Lipopolysaccharide export system permease LptF/LptG S40542_RS04500 PF03739 Lipopolysaccharide export system permease LptF/LptG S40542_RS04515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS04515 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS04515 PF00497 Bacterial extracellular solute-binding proteins, family 3 S40542_RS04525 PF06969 HemN C-terminal domain S40542_RS04525 PF04055 Radical SAM superfamily S40542_RS04530 PF01725 Ham1 family S40542_RS04540 PF02325 YGGT family S40542_RS04545 PF14748 Pyrroline-5-carboxylate reductase dimerisation S40542_RS04545 PF03807 NADP oxidoreductase coenzyme F420-dependent S40542_RS04550 PF01168 Alanine racemase, N-terminal domain S40542_RS04555 PF00437 Type II/IV secretion system protein S40542_RS04560 PF00437 Type II/IV secretion system protein S40542_RS04570 PF03652 Holliday junction resolvase S40542_RS04575 PF02622 Uncharacterized ACR, COG1678 S40542_RS04580 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain S40542_RS04580 PF02951 Prokaryotic glutathione synthetase, N-terminal domain S40542_RS04585 PF04452 RNA methyltransferase S40542_RS04600 PF03710 Glutamate-ammonia ligase adenylyltransferase S40542_RS04600 PF08335 GlnD PII-uridylyltransferase S40542_RS04610 PF03279 Bacterial lipid A biosynthesis acyltransferase S40542_RS04615 PF02321 Outer membrane efflux protein S40542_RS04620 PF00293 NUDIX domain S40542_RS04630 PF00149 Calcineurin-like phosphoesterase S40542_RS04635 PF05728 Uncharacterised protein family (UPF0227) S40542_RS04640 PF00204 DNA gyrase B S40542_RS04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS04640 PF01751 Toprim domain S40542_RS04640 PF00986 DNA gyrase B subunit, carboxyl terminus S40542_RS04645 PF00521 DNA gyrase/topoisomerase IV, subunit A S40542_RS04645 PF03989 DNA gyrase C-terminal domain, beta-propeller S40542_RS04655 PF04960 Glutaminase S40542_RS04660 PF00294 pfkB family carbohydrate kinase S40542_RS04665 PF14437 MafB19-like deaminase S40542_RS04670 PF01464 Transglycosylase SLT domain S40542_RS04670 PF00497 Bacterial extracellular solute-binding proteins, family 3 S40542_RS04675 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal S40542_RS04675 PF02769 AIR synthase related protein, C-terminal domain S40542_RS04675 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain S40542_RS04695 PF13617 YnbE-like lipoprotein S40542_RS04700 PF07027 Protein of unknown function (DUF1318) S40542_RS04710 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) S40542_RS04720 PF13580 SIS domain S40542_RS04725 PF00294 pfkB family carbohydrate kinase S40542_RS04725 PF01467 Cytidylyltransferase-like S40542_RS04735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) S40542_RS04745 PF00155 Aminotransferase class I and II S40542_RS04750 PF08240 Alcohol dehydrogenase GroES-like domain S40542_RS04750 PF00107 Zinc-binding dehydrogenase S40542_RS04755 PF00581 Rhodanese-like domain S40542_RS04760 PF01694 Rhomboid family S40542_RS04760 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease S40542_RS04765 PF03748 Flagellar basal body-associated protein FliL S40542_RS04770 PF04345 Chorismate lyase S40542_RS04775 PF01040 UbiA prenyltransferase family S40542_RS04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS04780 PF03466 LysR substrate binding domain S40542_RS04785 PF11849 Domain of unknown function (DUF3369) S40542_RS04805 PF00814 Glycoprotease family S40542_RS04810 PF02660 Glycerol-3-phosphate acyltransferase S40542_RS04815 PF02152 Dihydroneopterin aldolase S40542_RS04820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) S40542_RS04820 PF00809 Pterin binding enzyme S40542_RS04825 PF02673 Bacitracin resistance protein BacA S40542_RS04835 PF03942 DTW domain S40542_RS04840 PF13416 Bacterial extracellular solute-binding protein S40542_RS04850 PF00005 ABC transporter S40542_RS04850 PF08402 TOBE domain S40542_RS04860 PF01316 Arginine repressor, DNA binding domain S40542_RS04860 PF02863 Arginine repressor, C-terminal domain S40542_RS04865 PF00056 lactate/malate dehydrogenase, NAD binding domain S40542_RS04865 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain S40542_RS04870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S40542_RS04870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S40542_RS04870 PF01842 ACT domain S40542_RS04875 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) S40542_RS04880 PF01812 5-formyltetrahydrofolate cyclo-ligase family S40542_RS04895 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS04900 PF00543 Nitrogen regulatory protein P-II S40542_RS04905 PF00909 Ammonium Transporter Family S40542_RS04910 PF00905 Penicillin binding protein transpeptidase domain S40542_RS04910 PF00912 Transglycosylase S40542_RS04910 PF14814 Bifunctional transglycosylase second domain S40542_RS04915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS04915 PF00672 HAMP domain S40542_RS04920 PF00202 Aminotransferase class-III S40542_RS04925 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain S40542_RS04925 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain S40542_RS04930 PF03653 Uncharacterised protein family (UPF0093) S40542_RS04935 PF00654 Voltage gated chloride channel S40542_RS04940 PF01521 Iron-sulphur cluster biosynthesis S40542_RS04950 PF07690 Major Facilitator Superfamily S40542_RS04955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD S40542_RS04965 PF05175 Methyltransferase small domain S40542_RS04975 PF01722 BolA-like protein S40542_RS04980 PF12241 Trans-2-enoyl-CoA reductase catalytic region S40542_RS04980 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase S40542_RS04980 PF07055 Enoyl reductase FAD binding domain S40542_RS04985 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) S40542_RS04985 PF11973 NQRA C-terminal domain S40542_RS04990 PF03116 NQR2, RnfD, RnfE family S40542_RS04995 PF04205 FMN-binding domain S40542_RS05000 PF02508 Rnf-Nqr subunit, membrane protein S40542_RS05005 PF02508 Rnf-Nqr subunit, membrane protein S40542_RS05010 PF00175 Oxidoreductase NAD-binding domain S40542_RS05010 PF00111 2Fe-2S iron-sulfur cluster binding domain S40542_RS05010 PF00970 Oxidoreductase FAD-binding domain S40542_RS05015 PF02424 ApbE family S40542_RS05030 PF00005 ABC transporter S40542_RS05035 PF01032 FecCD transport family S40542_RS05040 PF02277 Phosphoribosyltransferase S40542_RS05045 PF02654 Cobalamin-5-phosphate synthase S40542_RS05050 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase S40542_RS05055 PF07685 CobB/CobQ-like glutamine amidotransferase domain S40542_RS05055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain S40542_RS05060 PF12557 Cob(I)alamin adenosyltransferase N terminal S40542_RS05060 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP S40542_RS05065 PF01497 Periplasmic binding protein S40542_RS05070 PF03167 Uracil DNA glycosylase superfamily S40542_RS05085 PF00923 Transaldolase/Fructose-6-phosphate aldolase S40542_RS05090 PF03883 Peroxide stress protein YaaA S40542_RS05095 PF07690 Major Facilitator Superfamily S40542_RS05105 PF00271 Helicase conserved C-terminal domain S40542_RS05105 PF00270 DEAD/DEAH box helicase S40542_RS05110 PF05175 Methyltransferase small domain S40542_RS05120 PF00258 Flavodoxin S40542_RS05125 PF00589 Phage integrase family S40542_RS05125 PF02899 Phage integrase, N-terminal SAM-like domain S40542_RS05130 PF10411 Disulfide bond isomerase protein N-terminus S40542_RS05130 PF13098 Thioredoxin-like domain S40542_RS05135 PF17768 RecJ OB domain S40542_RS05135 PF01368 DHH family S40542_RS05135 PF02272 DHHA1 domain S40542_RS05140 PF03462 PCRF domain S40542_RS05140 PF00472 RF-1 domain S40542_RS05145 PF01336 OB-fold nucleic acid binding domain S40542_RS05145 PF00152 tRNA synthetases class II (D, K and N) S40542_RS05190 PF07075 Protein of unknown function (DUF1343) S40542_RS05195 PF01380 SIS domain S40542_RS05195 PF01418 Helix-turn-helix domain, rpiR family S40542_RS05200 PF03553 Na+/H+ antiporter family S40542_RS05215 PF03544 Gram-negative bacterial TonB protein C-terminal S40542_RS05225 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS05240 PF00925 GTP cyclohydrolase II S40542_RS05250 PF02631 RecX family S40542_RS05255 PF01411 tRNA synthetases class II (A) S40542_RS05255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain S40542_RS05255 PF02272 DHHA1 domain S40542_RS05260 PF13840 ACT domain S40542_RS05260 PF00696 Amino acid kinase family S40542_RS05260 PF01842 ACT domain S40542_RS05265 PF02599 Global regulator protein family S40542_RS05275 PF04277 Oxaloacetate decarboxylase, gamma chain S40542_RS05280 PF02436 Conserved carboxylase domain S40542_RS05280 PF00682 HMGL-like S40542_RS05280 PF00364 Biotin-requiring enzyme S40542_RS05285 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit S40542_RS05295 PF00672 HAMP domain S40542_RS05295 PF01627 Hpt domain S40542_RS05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS05295 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS05295 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS05295 PF00072 Response regulator receiver domain S40542_RS05370 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS05370 PF03707 Bacterial signalling protein N terminal repeat S40542_RS05370 PF00563 EAL domain S40542_RS05375 PF00027 Cyclic nucleotide-binding domain S40542_RS05375 PF00520 Ion transport protein S40542_RS05380 PF13607 Succinyl-CoA ligase like flavodoxin domain S40542_RS05380 PF00583 Acetyltransferase (GNAT) family S40542_RS05380 PF13380 CoA binding domain S40542_RS05385 PF00672 HAMP domain S40542_RS05385 PF02743 Cache domain S40542_RS05385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS05390 PF00293 NUDIX domain S40542_RS05395 PF00248 Aldo/keto reductase family S40542_RS05400 PF11799 impB/mucB/samB family C-terminal domain S40542_RS05400 PF11798 IMS family HHH motif S40542_RS05400 PF00817 impB/mucB/samB family S40542_RS05405 PF02554 Carbon starvation protein CstA S40542_RS05405 PF13722 5TM C-terminal transporter carbon starvation CstA S40542_RS05410 PF02789 Cytosol aminopeptidase family, N-terminal domain S40542_RS05410 PF00883 Cytosol aminopeptidase family, catalytic domain S40542_RS05430 PF04381 Putative exonuclease, RdgC S40542_RS05435 PF08447 PAS fold S40542_RS05435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS05435 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS05435 PF00989 PAS fold S40542_RS05440 PF08769 Sporulation initiation factor Spo0A C terminal S40542_RS05440 PF00072 Response regulator receiver domain S40542_RS05445 PF00696 Amino acid kinase family S40542_RS05445 PF03447 Homoserine dehydrogenase, NAD binding domain S40542_RS05445 PF01842 ACT domain S40542_RS05445 PF13840 ACT domain S40542_RS05445 PF00742 Homoserine dehydrogenase S40542_RS05450 PF00288 GHMP kinases N terminal domain S40542_RS05450 PF08544 GHMP kinases C terminal S40542_RS05455 PF14821 Threonine synthase N terminus S40542_RS05455 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS05460 PF00464 Serine hydroxymethyltransferase S40542_RS05465 PF03477 ATP cone domain S40542_RS05470 PF01872 RibD C-terminal domain S40542_RS05470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region S40542_RS05475 PF00677 Lumazine binding domain S40542_RS05480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase S40542_RS05480 PF00925 GTP cyclohydrolase II S40542_RS05485 PF00885 6,7-dimethyl-8-ribityllumazine synthase S40542_RS05490 PF01029 NusB family S40542_RS05495 PF00586 AIR synthase related protein, N-terminal domain S40542_RS05495 PF02769 AIR synthase related protein, C-terminal domain S40542_RS05500 PF04608 Phosphatidylglycerophosphatase A S40542_RS05505 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS05525 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus S40542_RS05535 PF00106 short chain dehydrogenase S40542_RS05540 PF00581 Rhodanese-like domain S40542_RS05540 PF12368 Rhodanase C-terminal S40542_RS05540 PF17773 UPF0176 acylphosphatase like domain S40542_RS05545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family S40542_RS05560 PF13847 Methyltransferase domain S40542_RS05565 PF01784 NIF3 (NGG1p interacting factor 3) S40542_RS05575 PF02798 Glutathione S-transferase, N-terminal domain S40542_RS05585 PF00704 Glycosyl hydrolases family 18 S40542_RS05585 PF08329 Chitinase A, N-terminal domain S40542_RS05605 PF04055 Radical SAM superfamily S40542_RS05605 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family S40542_RS05610 PF03099 Biotin/lipoate A/B protein ligase family S40542_RS05615 PF04359 Protein of unknown function (DUF493) S40542_RS05620 PF07943 Penicillin-binding protein 5, C-terminal domain S40542_RS05620 PF00768 D-alanyl-D-alanine carboxypeptidase S40542_RS05625 PF05036 Sporulation related domain S40542_RS05625 PF03330 Lytic transglycolase S40542_RS05630 PF01098 Cell cycle protein S40542_RS05635 PF00905 Penicillin binding protein transpeptidase domain S40542_RS05635 PF03717 Penicillin-binding Protein dimerisation domain S40542_RS05640 PF02590 Predicted SPOUT methyltransferase S40542_RS05650 PF01467 Cytidylyltransferase-like S40542_RS05665 PF00133 tRNA synthetases class I (I, L, M and V) S40542_RS05665 PF08264 Anticodon-binding domain of tRNA S40542_RS05665 PF13603 Leucyl-tRNA synthetase, Domain 2 S40542_RS05675 PF13654 AAA domain S40542_RS05675 PF05362 Lon protease (S16) C-terminal proteolytic domain S40542_RS05680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S40542_RS05680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase S40542_RS05705 PF02773 S-adenosylmethionine synthetase, C-terminal domain S40542_RS05705 PF02772 S-adenosylmethionine synthetase, central domain S40542_RS05705 PF00438 S-adenosylmethionine synthetase, N-terminal domain S40542_RS05710 PF02779 Transketolase, pyrimidine binding domain S40542_RS05710 PF02780 Transketolase, C-terminal domain S40542_RS05710 PF00456 Transketolase, thiamine diphosphate binding domain S40542_RS05715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS05715 PF00672 HAMP domain S40542_RS05715 PF16591 Helical bimodular sensor domain S40542_RS05720 PF00149 Calcineurin-like phosphoesterase S40542_RS05725 PF04379 ApaG domain S40542_RS05730 PF00398 Ribosomal RNA adenine dimethylase S40542_RS05735 PF04166 Pyridoxal phosphate biosynthetic protein PdxA S40542_RS05740 PF09312 SurA N-terminal domain S40542_RS05745 PF04453 LPS transport system D S40542_RS05745 PF03968 OstA-like protein S40542_RS05750 PF01636 Phosphotransferase enzyme family S40542_RS05755 PF00483 Nucleotidyl transferase S40542_RS05760 PF05099 Tellurite resistance protein TerB S40542_RS05760 PF00226 DnaJ domain S40542_RS05775 PF03600 Citrate transporter S40542_RS05780 PF00365 Phosphofructokinase S40542_RS05790 PF04237 YjbR S40542_RS05795 PF00563 EAL domain S40542_RS05795 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS05795 PF03707 Bacterial signalling protein N terminal repeat S40542_RS05800 PF00675 Insulinase (Peptidase family M16) S40542_RS05800 PF05193 Peptidase M16 inactive domain S40542_RS05800 PF16187 Middle or third domain of peptidase_M16 S40542_RS05810 PF07715 TonB-dependent Receptor Plug Domain S40542_RS05810 PF00593 TonB dependent receptor S40542_RS05820 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS05830 PF00012 Hsp70 protein S40542_RS05835 PF02142 MGS-like domain S40542_RS05845 PF07690 Major Facilitator Superfamily S40542_RS05860 PF01464 Transglycosylase SLT domain S40542_RS05860 PF01551 Peptidase family M23 S40542_RS05860 PF10145 Phage-related minor tail protein S40542_RS05865 PF01557 Fumarylacetoacetate (FAA) hydrolase family S40542_RS05870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S40542_RS05875 PF00854 POT family S40542_RS05920 PF18024 Helix-turn-helix domain S40542_RS05920 PF00158 Sigma-54 interaction domain S40542_RS05935 PF03922 OmpW family S40542_RS05940 PF01546 Peptidase family M20/M25/M40 S40542_RS05940 PF07687 Peptidase dimerisation domain S40542_RS05975 PF02576 RimP N-terminal domain S40542_RS05975 PF17384 RimP C-terminal SH3 domain S40542_RS05980 PF08529 NusA N-terminal domain S40542_RS05980 PF00575 S1 RNA binding domain S40542_RS05980 PF13184 NusA-like KH domain S40542_RS05985 PF00009 Elongation factor Tu GTP binding domain S40542_RS05985 PF11987 Translation-initiation factor 2 S40542_RS05985 PF04760 Translation initiation factor IF-2, N-terminal region S40542_RS05985 PF08364 Bacterial translation initiation factor IF-2 associated region S40542_RS05990 PF02033 Ribosome-binding factor A S40542_RS05995 PF16198 tRNA pseudouridylate synthase B C-terminal domain S40542_RS05995 PF01509 TruB family pseudouridylate synthase (N terminal domain) S40542_RS05995 PF09157 Pseudouridine synthase II TruB, C-terminal S40542_RS06000 PF00312 Ribosomal protein S15 S40542_RS06005 PF00575 S1 RNA binding domain S40542_RS06005 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain S40542_RS06005 PF00013 KH domain S40542_RS06005 PF01138 3' exoribonuclease family, domain 1 S40542_RS06005 PF03725 3' exoribonuclease family, domain 2 S40542_RS06010 PF13181 Tetratricopeptide repeat S40542_RS06010 PF07719 Tetratricopeptide repeat S40542_RS06020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus S40542_RS06020 PF13244 Domain of unknown function (DUF4040) S40542_RS06020 PF00361 Proton-conducting membrane transporter S40542_RS06020 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter S40542_RS06025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L S40542_RS06030 PF00361 Proton-conducting membrane transporter S40542_RS06035 PF01899 Na+/H+ ion antiporter subunit S40542_RS06040 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) S40542_RS06045 PF03334 Na+/H+ antiporter subunit S40542_RS06055 PF01131 DNA topoisomerase S40542_RS06055 PF01751 Toprim domain S40542_RS06060 PF00085 Thioredoxin S40542_RS06080 PF00460 Flagella basal body rod protein S40542_RS06085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S40542_RS06085 PF00460 Flagella basal body rod protein S40542_RS06095 PF07559 Flagellar basal body protein FlaE S40542_RS06095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S40542_RS06095 PF00460 Flagella basal body rod protein S40542_RS06100 PF00460 Flagella basal body rod protein S40542_RS06100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S40542_RS06105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S40542_RS06105 PF00460 Flagella basal body rod protein S40542_RS06110 PF02107 Flagellar L-ring protein S40542_RS06115 PF02119 Flagellar P-ring protein S40542_RS06120 PF10135 Rod binding protein S40542_RS06120 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase S40542_RS06125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S40542_RS06125 PF00460 Flagella basal body rod protein S40542_RS06135 PF00700 Bacterial flagellin C-terminal helical region S40542_RS06135 PF00669 Bacterial flagellin N-terminal helical region S40542_RS06135 PF07196 Flagellin hook IN motif S40542_RS06140 PF07196 Flagellin hook IN motif S40542_RS06140 PF00669 Bacterial flagellin N-terminal helical region S40542_RS06140 PF00700 Bacterial flagellin C-terminal helical region S40542_RS06145 PF07196 Flagellin hook IN motif S40542_RS06145 PF00700 Bacterial flagellin C-terminal helical region S40542_RS06145 PF00669 Bacterial flagellin N-terminal helical region S40542_RS06155 PF07196 Flagellin hook IN motif S40542_RS06155 PF07195 Flagellar hook-associated protein 2 C-terminus S40542_RS06155 PF02465 Flagellar hook-associated protein 2 N-terminus S40542_RS06160 PF02561 Flagellar protein FliS S40542_RS06175 PF16221 winged helix-turn-helix S40542_RS06175 PF09940 Domain of unknown function (DUF2172) S40542_RS06175 PF16254 Domain of unknown function (DUF4910) S40542_RS06180 PF08241 Methyltransferase domain S40542_RS06185 PF01593 Flavin containing amine oxidoreductase S40542_RS06205 PF13193 AMP-binding enzyme C-terminal domain S40542_RS06205 PF00501 AMP-binding enzyme S40542_RS06210 PF00483 Nucleotidyl transferase S40542_RS06215 PF00294 pfkB family carbohydrate kinase S40542_RS06215 PF01467 Cytidylyltransferase-like S40542_RS06220 PF00107 Zinc-binding dehydrogenase S40542_RS06220 PF08240 Alcohol dehydrogenase GroES-like domain S40542_RS06225 PF04321 RmlD substrate binding domain S40542_RS06240 PF02779 Transketolase, pyrimidine binding domain S40542_RS06245 PF00456 Transketolase, thiamine diphosphate binding domain S40542_RS06255 PF02779 Transketolase, pyrimidine binding domain S40542_RS06255 PF02780 Transketolase, C-terminal domain S40542_RS06255 PF00364 Biotin-requiring enzyme S40542_RS06260 PF00676 Dehydrogenase E1 component S40542_RS06270 PF08468 Methyltransferase small domain N-terminal S40542_RS06270 PF05175 Methyltransferase small domain S40542_RS06275 PF16363 GDP-mannose 4,6 dehydratase S40542_RS06285 PF13580 SIS domain S40542_RS06290 PF16363 GDP-mannose 4,6 dehydratase S40542_RS06295 PF02348 Cytidylyltransferase S40542_RS06305 PF03102 NeuB family S40542_RS06305 PF08666 SAF domain S40542_RS06320 PF00501 AMP-binding enzyme S40542_RS06320 PF13193 AMP-binding enzyme C-terminal domain S40542_RS06330 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family S40542_RS06335 PF02719 Polysaccharide biosynthesis protein S40542_RS06340 PF00700 Bacterial flagellin C-terminal helical region S40542_RS06340 PF00669 Bacterial flagellin N-terminal helical region S40542_RS06345 PF00158 Sigma-54 interaction domain S40542_RS06345 PF06490 Flagellar regulatory protein FleQ S40542_RS06345 PF02954 Bacterial regulatory protein, Fis family S40542_RS06350 PF13673 Acetyltransferase (GNAT) domain S40542_RS06350 PF00117 Glutamine amidotransferase class-I S40542_RS06350 PF00958 GMP synthase C terminal domain S40542_RS06350 PF03352 Methyladenine glycosylase S40542_RS06350 PF13302 Acetyltransferase (GNAT) domain S40542_RS06355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS06355 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS06355 PF13188 PAS domain S40542_RS06360 PF00072 Response regulator receiver domain S40542_RS06360 PF00158 Sigma-54 interaction domain S40542_RS06360 PF02954 Bacterial regulatory protein, Fis family S40542_RS06365 PF02049 Flagellar hook-basal body complex protein FliE S40542_RS06370 PF01514 Secretory protein of YscJ/FliF family S40542_RS06370 PF08345 Flagellar M-ring protein C-terminal S40542_RS06375 PF01706 FliG C-terminal domain S40542_RS06375 PF14841 FliG middle domain S40542_RS06375 PF14842 FliG N-terminal domain S40542_RS06385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S40542_RS06385 PF18269 T3SS EscN ATPase C-terminal domain S40542_RS06395 PF02120 Flagellar hook-length control protein FliK S40542_RS06405 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S40542_RS06405 PF02154 Flagellar motor switch protein FliM S40542_RS06410 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S40542_RS06415 PF04347 Flagellar biosynthesis protein, FliO S40542_RS06420 PF00813 FliP family S40542_RS06425 PF01313 Bacterial export proteins, family 3 S40542_RS06430 PF01311 Bacterial export proteins, family 1 S40542_RS06435 PF01312 FlhB HrpN YscU SpaS Family S40542_RS06440 PF00771 FHIPEP family S40542_RS06445 PF00448 SRP54-type protein, GTPase domain S40542_RS06450 PF10609 NUBPL iron-transfer P-loop NTPase S40542_RS06455 PF04545 Sigma-70, region 4 S40542_RS06455 PF04539 Sigma-70 region 3 S40542_RS06455 PF04542 Sigma-70 region 2 S40542_RS06460 PF00072 Response regulator receiver domain S40542_RS06465 PF04344 Chemotaxis phosphatase, CheZ S40542_RS06470 PF01627 Hpt domain S40542_RS06470 PF01584 CheW-like domain S40542_RS06470 PF00072 Response regulator receiver domain S40542_RS06470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS06470 PF02895 Signal transducing histidine kinase, homodimeric domain S40542_RS06475 PF01339 CheB methylesterase S40542_RS06475 PF00072 Response regulator receiver domain S40542_RS06480 PF13614 AAA domain S40542_RS06490 PF01584 CheW-like domain S40542_RS06505 PF00144 Beta-lactamase S40542_RS06530 PF00005 ABC transporter S40542_RS06535 PF03379 CcmB protein S40542_RS06540 PF01578 Cytochrome C assembly protein S40542_RS06545 PF04995 Heme exporter protein D (CcmD) S40542_RS06550 PF03100 CcmE S40542_RS06555 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal S40542_RS06555 PF01578 Cytochrome C assembly protein S40542_RS06560 PF08534 Redoxin S40542_RS06565 PF03918 Cytochrome C biogenesis protein S40542_RS06575 PF04333 MlaA lipoprotein S40542_RS06585 PF00563 EAL domain S40542_RS06585 PF08668 HDOD domain S40542_RS06590 PF00474 Sodium:solute symporter family S40542_RS06600 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal S40542_RS06600 PF14602 Hexapeptide repeat of succinyl-transferase S40542_RS06600 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS06605 PF01966 HD domain S40542_RS06605 PF01909 Nucleotidyltransferase domain S40542_RS06605 PF08335 GlnD PII-uridylyltransferase S40542_RS06610 PF00557 Metallopeptidase family M24 S40542_RS06615 PF00318 Ribosomal protein S2 S40542_RS06620 PF00889 Elongation factor TS S40542_RS06625 PF00696 Amino acid kinase family S40542_RS06630 PF01765 Ribosome recycling factor S40542_RS06635 PF01255 Putative undecaprenyl diphosphate synthase S40542_RS06645 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain S40542_RS06645 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase S40542_RS06645 PF13288 DXP reductoisomerase C-terminal domain S40542_RS06650 PF17820 PDZ domain S40542_RS06650 PF02163 Peptidase family M50 S40542_RS06655 PF07244 Surface antigen variable number repeat S40542_RS06655 PF01103 Surface antigen S40542_RS06660 PF03938 Outer membrane protein (OmpH-like) S40542_RS06665 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD S40542_RS06665 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS06670 PF07977 FabA-like domain S40542_RS06675 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 S40542_RS06675 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS06680 PF02684 Lipid-A-disaccharide synthetase S40542_RS06685 PF01351 Ribonuclease HII S40542_RS06690 PF07733 Bacterial DNA polymerase III alpha NTPase domain S40542_RS06690 PF14579 Helix-hairpin-helix motif S40542_RS06690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain S40542_RS06690 PF01336 OB-fold nucleic acid binding domain S40542_RS06690 PF02811 PHP domain S40542_RS06695 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit S40542_RS06700 PF09179 TilS substrate binding domain S40542_RS06700 PF01171 PP-loop family S40542_RS06700 PF11734 TilS substrate C-terminal domain S40542_RS06710 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS06715 PF02254 TrkA-N domain S40542_RS06715 PF00999 Sodium/hydrogen exchanger family S40542_RS06715 PF02080 TrkA-C domain S40542_RS06770 PF13006 Insertion element 4 transposase N-terminal S40542_RS06770 PF01609 Transposase DDE domain S40542_RS06780 PF08448 PAS fold S40542_RS06780 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS06780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS06780 PF13426 PAS domain S40542_RS06780 PF00072 Response regulator receiver domain S40542_RS06805 PF00089 Trypsin S40542_RS06810 PF00089 Trypsin S40542_RS06820 PF02492 CobW/HypB/UreG, nucleotide-binding domain S40542_RS06820 PF07683 Cobalamin synthesis protein cobW C-terminal domain S40542_RS06825 PF01258 Prokaryotic dksA/traR C4-type zinc finger S40542_RS06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS06835 PF07670 Nucleoside recognition S40542_RS06835 PF02421 Ferrous iron transport protein B S40542_RS06835 PF07664 Ferrous iron transport protein B C terminus S40542_RS06855 PF01381 Helix-turn-helix S40542_RS06860 PF04397 LytTr DNA-binding domain S40542_RS06860 PF00072 Response regulator receiver domain S40542_RS06865 PF06580 Histidine kinase S40542_RS06865 PF07694 5TMR of 5TMR-LYT S40542_RS06865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS06870 PF00561 alpha/beta hydrolase fold S40542_RS06890 PF08713 DNA alkylation repair enzyme S40542_RS06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS06910 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS06910 PF16736 Single Cache-like S40542_RS06910 PF00989 PAS fold S40542_RS06915 PF00486 Transcriptional regulatory protein, C terminal S40542_RS06915 PF00072 Response regulator receiver domain S40542_RS06965 PF02492 CobW/HypB/UreG, nucleotide-binding domain S40542_RS06965 PF07683 Cobalamin synthesis protein cobW C-terminal domain S40542_RS06970 PF01235 Sodium:alanine symporter family S40542_RS06990 PF08453 Peptidase family M9 N-terminal S40542_RS06990 PF01752 Collagenase S40542_RS07000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S40542_RS07005 PF04151 Bacterial pre-peptidase C-terminal domain S40542_RS07005 PF04389 Peptidase family M28 S40542_RS07020 PF00563 EAL domain S40542_RS07020 PF08447 PAS fold S40542_RS07020 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS07020 PF08448 PAS fold S40542_RS07030 PF00308 Bacterial dnaA protein S40542_RS07035 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain S40542_RS07035 PF01409 tRNA synthetases class II core domain (F) S40542_RS07040 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain S40542_RS07040 PF01588 Putative tRNA binding domain S40542_RS07040 PF03147 Ferredoxin-fold anticodon binding domain S40542_RS07040 PF03484 tRNA synthetase B5 domain S40542_RS07040 PF03483 B3/4 domain S40542_RS07045 PF00216 Bacterial DNA-binding protein S40542_RS07050 PF12792 CSS motif domain associated with EAL S40542_RS07050 PF00563 EAL domain S40542_RS07055 PF00128 Alpha amylase, catalytic domain S40542_RS07065 PF04820 Tryptophan halogenase S40542_RS07080 PF09137 Glucodextranase, domain N S40542_RS07080 PF00723 Glycosyl hydrolases family 15 S40542_RS07090 PF01966 HD domain S40542_RS07090 PF13286 Phosphohydrolase-associated domain S40542_RS07120 PF00005 ABC transporter S40542_RS07125 PF12679 ABC-2 family transporter protein S40542_RS07135 PF04073 Aminoacyl-tRNA editing domain S40542_RS07135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S40542_RS07135 PF03129 Anticodon binding domain S40542_RS07140 PF01980 tRNA-methyltransferase O S40542_RS07140 PF18389 TrmO C-terminal domain S40542_RS07150 PF02311 AraC-like ligand binding domain S40542_RS07150 PF12833 Helix-turn-helix domain S40542_RS07165 PF01432 Peptidase family M3 S40542_RS07180 PF00593 TonB dependent receptor S40542_RS07180 PF07715 TonB-dependent Receptor Plug Domain S40542_RS07220 PF02743 Cache domain S40542_RS07220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07220 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS07265 PF07715 TonB-dependent Receptor Plug Domain S40542_RS07265 PF00593 TonB dependent receptor S40542_RS07270 PF00873 AcrB/AcrD/AcrF family S40542_RS07285 PF07690 Major Facilitator Superfamily S40542_RS07295 PF00005 ABC transporter S40542_RS07345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07345 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS07360 PF01494 FAD binding domain S40542_RS07365 PF03466 LysR substrate binding domain S40542_RS07365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS07385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S40542_RS07415 PF03466 LysR substrate binding domain S40542_RS07415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS07430 PF01433 Peptidase family M1 domain S40542_RS07430 PF11838 ERAP1-like C-terminal domain S40542_RS07605 PF02371 Transposase IS116/IS110/IS902 family S40542_RS07605 PF01548 Transposase S40542_RS07670 PF13276 HTH-like domain S40542_RS07670 PF13683 Integrase core domain S40542_RS07675 PF01527 Transposase S40542_RS07750 PF00106 short chain dehydrogenase S40542_RS07770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07770 PF00360 Phytochrome region S40542_RS07770 PF08446 PAS fold S40542_RS07770 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS07770 PF01590 GAF domain S40542_RS07775 PF00072 Response regulator receiver domain S40542_RS07780 PF00005 ABC transporter S40542_RS07795 PF03831 PhnA domain S40542_RS07795 PF08274 PhnA Zinc-Ribbon S40542_RS07800 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS07800 PF00563 EAL domain S40542_RS07800 PF03707 Bacterial signalling protein N terminal repeat S40542_RS07800 PF13188 PAS domain S40542_RS07805 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS07805 PF00360 Phytochrome region S40542_RS07805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07805 PF01590 GAF domain S40542_RS07805 PF08446 PAS fold S40542_RS07810 PF00360 Phytochrome region S40542_RS07810 PF08446 PAS fold S40542_RS07810 PF01590 GAF domain S40542_RS07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07810 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS07820 PF00989 PAS fold S40542_RS07820 PF17203 Single cache domain 3 S40542_RS07820 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain S40542_RS07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07825 PF00072 Response regulator receiver domain S40542_RS07825 PF01339 CheB methylesterase S40542_RS07830 PF00563 EAL domain S40542_RS07830 PF01590 GAF domain S40542_RS07830 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS07830 PF00360 Phytochrome region S40542_RS07835 PF01810 LysE type translocator S40542_RS07840 PF01661 Macro domain S40542_RS07845 PF00486 Transcriptional regulatory protein, C terminal S40542_RS07845 PF00072 Response regulator receiver domain S40542_RS07850 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07850 PF00672 HAMP domain S40542_RS07855 PF06123 Inner membrane protein CreD S40542_RS07860 PF01810 LysE type translocator S40542_RS07865 PF13673 Acetyltransferase (GNAT) domain S40542_RS07865 PF00958 GMP synthase C terminal domain S40542_RS07865 PF03352 Methyladenine glycosylase S40542_RS07865 PF13302 Acetyltransferase (GNAT) domain S40542_RS07865 PF00117 Glutamine amidotransferase class-I S40542_RS07875 PF00440 Bacterial regulatory proteins, tetR family S40542_RS07875 PF08361 MAATS-type transcriptional repressor, C-terminal region S40542_RS07880 PF12706 Beta-lactamase superfamily domain S40542_RS07910 PF00667 FAD binding domain S40542_RS07910 PF00175 Oxidoreductase NAD-binding domain S40542_RS07910 PF00258 Flavodoxin S40542_RS07915 PF00310 Glutamine amidotransferases class-II S40542_RS07915 PF01493 GXGXG motif S40542_RS07915 PF04898 Glutamate synthase central domain S40542_RS07915 PF01645 Conserved region in glutamate synthase S40542_RS07920 PF00579 tRNA synthetases class I (W and Y) S40542_RS07935 PF01494 FAD binding domain S40542_RS07940 PF12902 Ferritin-like S40542_RS07945 PF01593 Flavin containing amine oxidoreductase S40542_RS07960 PF00072 Response regulator receiver domain S40542_RS07960 PF13188 PAS domain S40542_RS07960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS07960 PF08448 PAS fold S40542_RS07960 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS07965 PF00072 Response regulator receiver domain S40542_RS07965 PF00486 Transcriptional regulatory protein, C terminal S40542_RS07980 PF00892 EamA-like transporter family S40542_RS07990 PF00360 Phytochrome region S40542_RS07990 PF00563 EAL domain S40542_RS07990 PF01590 GAF domain S40542_RS07990 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS07995 PF03222 Tryptophan/tyrosine permease family S40542_RS08010 PF00557 Metallopeptidase family M24 S40542_RS08010 PF01321 Creatinase/Prolidase N-terminal domain S40542_RS08015 PF01266 FAD dependent oxidoreductase S40542_RS08020 PF00701 Dihydrodipicolinate synthetase family S40542_RS08025 PF05544 Proline racemase S40542_RS08030 PF00171 Aldehyde dehydrogenase family S40542_RS08035 PF00392 Bacterial regulatory proteins, gntR family S40542_RS08040 PF02797 Chalcone and stilbene synthases, C-terminal domain S40542_RS08040 PF00195 Chalcone and stilbene synthases, N-terminal domain S40542_RS08045 PF07715 TonB-dependent Receptor Plug Domain S40542_RS08045 PF00593 TonB dependent receptor S40542_RS08050 PF00072 Response regulator receiver domain S40542_RS08050 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS08055 PF00011 Hsp20/alpha crystallin family S40542_RS08075 PF00155 Aminotransferase class I and II S40542_RS08075 PF00392 Bacterial regulatory proteins, gntR family S40542_RS08090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S40542_RS08095 PF00005 ABC transporter S40542_RS08100 PF00005 ABC transporter S40542_RS08100 PF02687 FtsX-like permease family S40542_RS08100 PF12704 MacB-like periplasmic core domain S40542_RS08105 PF00005 ABC transporter S40542_RS08105 PF12704 MacB-like periplasmic core domain S40542_RS08105 PF02687 FtsX-like permease family S40542_RS08110 PF00158 Sigma-54 interaction domain S40542_RS08110 PF02954 Bacterial regulatory protein, Fis family S40542_RS08110 PF00072 Response regulator receiver domain S40542_RS08115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS08115 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS08115 PF00989 PAS fold S40542_RS08125 PF00326 Prolyl oligopeptidase family S40542_RS08140 PF00117 Glutamine amidotransferase class-I S40542_RS08140 PF06418 CTP synthase N-terminus S40542_RS08145 PF01451 Low molecular weight phosphotyrosine protein phosphatase S40542_RS08165 PF03972 MmgE/PrpD family S40542_RS08170 PF00293 NUDIX domain S40542_RS08170 PF09297 NADH pyrophosphatase zinc ribbon domain S40542_RS08190 PF00561 alpha/beta hydrolase fold S40542_RS08200 PF00175 Oxidoreductase NAD-binding domain S40542_RS08200 PF00042 Globin S40542_RS08200 PF00970 Oxidoreductase FAD-binding domain S40542_RS08210 PF00158 Sigma-54 interaction domain S40542_RS08210 PF01590 GAF domain S40542_RS08215 PF00210 Ferritin-like domain S40542_RS08220 PF00210 Ferritin-like domain S40542_RS08240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS08240 PF00072 Response regulator receiver domain S40542_RS08240 PF01627 Hpt domain S40542_RS08240 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS08240 PF00672 HAMP domain S40542_RS08245 PF14579 Helix-hairpin-helix motif S40542_RS08245 PF11490 DNA polymerase III polC-type N-terminus II S40542_RS08245 PF07733 Bacterial DNA polymerase III alpha NTPase domain S40542_RS08245 PF02811 PHP domain S40542_RS08245 PF17657 Bacterial DNA polymerase III alpha subunit finger domain S40542_RS08245 PF00929 Exonuclease S40542_RS08255 PF00375 Sodium:dicarboxylate symporter family S40542_RS08295 PF07494 Two component regulator propeller S40542_RS08295 PF12833 Helix-turn-helix domain S40542_RS08295 PF00072 Response regulator receiver domain S40542_RS08295 PF07495 Y_Y_Y domain S40542_RS08295 PF07495 Y_Y_Y domain S40542_RS08295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS08295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS08295 PF12833 Helix-turn-helix domain S40542_RS08295 PF00072 Response regulator receiver domain S40542_RS08295 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS08295 PF07494 Two component regulator propeller S40542_RS08295 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS08345 PF13195 Protein of unknown function (DUF4011) S40542_RS08345 PF13087 AAA domain S40542_RS08345 PF13086 AAA domain S40542_RS08350 PF00589 Phage integrase family S40542_RS08370 PF01527 Transposase S40542_RS08375 PF13276 HTH-like domain S40542_RS08375 PF13683 Integrase core domain S40542_RS08395 PF03747 ADP-ribosylglycohydrolase S40542_RS08400 PF13808 DDE_Tnp_1-associated S40542_RS08400 PF01609 Transposase DDE domain S40542_RS08420 PF00873 AcrB/AcrD/AcrF family S40542_RS08435 PF18381 YcaO cyclodehydratase C-terminal domain S40542_RS08435 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding S40542_RS08440 PF17676 LD-carboxypeptidase C-terminal domain S40542_RS08440 PF02016 LD-carboxypeptidase N-terminal domain S40542_RS08460 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS08500 PF02525 Flavodoxin-like fold S40542_RS08505 PF01638 HxlR-like helix-turn-helix S40542_RS08510 PF00196 Bacterial regulatory proteins, luxR family S40542_RS08510 PF03472 Autoinducer binding domain S40542_RS08520 PF17938 Tetracyclin repressor-like, C-terminal domain S40542_RS08520 PF00440 Bacterial regulatory proteins, tetR family S40542_RS08530 PF00873 AcrB/AcrD/AcrF family S40542_RS08545 PF00111 2Fe-2S iron-sulfur cluster binding domain S40542_RS08560 PF01494 FAD binding domain S40542_RS08585 PF08447 PAS fold S40542_RS08585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS08585 PF13426 PAS domain S40542_RS08600 PF03466 LysR substrate binding domain S40542_RS08600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS08620 PF00929 Exonuclease S40542_RS08625 PF00691 OmpA family S40542_RS08625 PF18393 MotY N-terminal domain S40542_RS08630 PF05430 S-adenosyl-L-methionine-dependent methyltransferase S40542_RS08630 PF01266 FAD dependent oxidoreductase S40542_RS08635 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS08635 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS08640 PF01668 SmpB protein S40542_RS08645 PF03364 Polyketide cyclase / dehydrase and lipid transport S40542_RS08650 PF03658 RnfH family Ubiquitin S40542_RS08660 PF03358 NADPH-dependent FMN reductase S40542_RS08665 PF03960 ArsC family S40542_RS08670 PF01435 Peptidase family M48 S40542_RS08685 PF01594 AI-2E family transporter S40542_RS08690 PF00266 Aminotransferase class-V S40542_RS08695 PF00356 Bacterial regulatory proteins, lacI family S40542_RS08700 PF00342 Phosphoglucose isomerase S40542_RS08705 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain S40542_RS08705 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain S40542_RS08710 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase S40542_RS08720 PF04820 Tryptophan halogenase S40542_RS08735 PF01112 Asparaginase S40542_RS08740 PF00478 IMP dehydrogenase / GMP reductase domain S40542_RS08740 PF00571 CBS domain S40542_RS08745 PF00270 DEAD/DEAH box helicase S40542_RS08745 PF11898 Domain of unknown function (DUF3418) S40542_RS08745 PF00271 Helicase conserved C-terminal domain S40542_RS08745 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold S40542_RS08745 PF04408 Helicase associated domain (HA2) S40542_RS08750 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS08750 PF00072 Response regulator receiver domain S40542_RS08760 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS08760 PF00672 HAMP domain S40542_RS08760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS08765 PF00072 Response regulator receiver domain S40542_RS08765 PF00486 Transcriptional regulatory protein, C terminal S40542_RS08785 PF04542 Sigma-70 region 2 S40542_RS08785 PF08281 Sigma-70, region 4 S40542_RS08795 PF13519 von Willebrand factor type A domain S40542_RS08795 PF07584 Aerotolerance regulator N-terminal S40542_RS08810 PF01882 Protein of unknown function DUF58 S40542_RS08815 PF17863 AAA lid domain S40542_RS08815 PF07726 ATPase family associated with various cellular activities (AAA) S40542_RS08820 PF00108 Thiolase, N-terminal domain S40542_RS08820 PF02803 Thiolase, C-terminal domain S40542_RS08825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain S40542_RS08825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain S40542_RS08825 PF00378 Enoyl-CoA hydratase/isomerase S40542_RS08835 PF00082 Subtilase family S40542_RS08835 PF01483 Proprotein convertase P-domain S40542_RS08840 PF01483 Proprotein convertase P-domain S40542_RS08840 PF00082 Subtilase family S40542_RS08855 PF13533 Biotin-lipoyl like S40542_RS08860 PF00873 AcrB/AcrD/AcrF family S40542_RS08865 PF04315 Elongation factor P hydroxylase S40542_RS08885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS08885 PF03466 LysR substrate binding domain S40542_RS08890 PF00248 Aldo/keto reductase family S40542_RS08955 PF01979 Amidohydrolase family S40542_RS08970 PF03806 AbgT putative transporter family S40542_RS08975 PF01609 Transposase DDE domain S40542_RS08975 PF13006 Insertion element 4 transposase N-terminal S40542_RS08980 PF08003 Protein of unknown function (DUF1698) S40542_RS08985 PF13847 Methyltransferase domain S40542_RS08995 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS08995 PF00072 Response regulator receiver domain S40542_RS08995 PF00672 HAMP domain S40542_RS08995 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS08995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS08995 PF01627 Hpt domain S40542_RS09000 PF00072 Response regulator receiver domain S40542_RS09000 PF00486 Transcriptional regulatory protein, C terminal S40542_RS09010 PF01869 BadF/BadG/BcrA/BcrD ATPase family S40542_RS09015 PF01979 Amidohydrolase family S40542_RS09025 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase S40542_RS09030 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain S40542_RS09030 PF00293 NUDIX domain S40542_RS09030 PF09297 NADH pyrophosphatase zinc ribbon domain S40542_RS09035 PF01053 Cys/Met metabolism PLP-dependent enzyme S40542_RS09040 PF08411 Exonuclease C-terminal S40542_RS09040 PF00929 Exonuclease S40542_RS09065 PF02472 Biopolymer transport protein ExbD/TolR S40542_RS09070 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS09075 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS09085 PF00593 TonB dependent receptor S40542_RS09085 PF07715 TonB-dependent Receptor Plug Domain S40542_RS09090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS09090 PF03466 LysR substrate binding domain S40542_RS09115 PF00069 Protein kinase domain S40542_RS09115 PF03793 PASTA domain S40542_RS09135 PF01113 Dihydrodipicolinate reductase, N-terminus S40542_RS09135 PF05173 Dihydrodipicolinate reductase, C-terminus S40542_RS09140 PF00117 Glutamine amidotransferase class-I S40542_RS09140 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain S40542_RS09145 PF02142 MGS-like domain S40542_RS09145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S40542_RS09145 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain S40542_RS09150 PF01272 Transcription elongation factor, GreA/GreB, C-term S40542_RS09150 PF03449 Transcription elongation factor, N-terminal S40542_RS09155 PF01590 GAF domain S40542_RS09155 PF00158 Sigma-54 interaction domain S40542_RS09160 PF13746 4Fe-4S dicluster domain S40542_RS09160 PF12801 4Fe-4S binding domain S40542_RS09160 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase S40542_RS09165 PF00582 Universal stress protein family S40542_RS09170 PF13545 Crp-like helix-turn-helix domain S40542_RS09170 PF00027 Cyclic nucleotide-binding domain S40542_RS09185 PF00403 Heavy-metal-associated domain S40542_RS09195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S40542_RS09195 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP S40542_RS09210 PF00115 Cytochrome C and Quinol oxidase polypeptide I S40542_RS09235 PF01272 Transcription elongation factor, GreA/GreB, C-term S40542_RS09235 PF03449 Transcription elongation factor, N-terminal S40542_RS09245 PF12852 Cupin S40542_RS09245 PF12833 Helix-turn-helix domain S40542_RS09250 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS09250 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS09255 PF00756 Putative esterase S40542_RS09260 PF00107 Zinc-binding dehydrogenase S40542_RS09260 PF08240 Alcohol dehydrogenase GroES-like domain S40542_RS09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS09265 PF03466 LysR substrate binding domain S40542_RS09270 PF01740 STAS domain S40542_RS09270 PF00916 Sulfate permease family S40542_RS09275 PF12704 MacB-like periplasmic core domain S40542_RS09275 PF02687 FtsX-like permease family S40542_RS09280 PF00005 ABC transporter S40542_RS09285 PF12704 MacB-like periplasmic core domain S40542_RS09285 PF02687 FtsX-like permease family S40542_RS09290 PF01590 GAF domain S40542_RS09290 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS09290 PF00989 PAS fold S40542_RS09290 PF00563 EAL domain S40542_RS09295 PF01339 CheB methylesterase S40542_RS09295 PF00072 Response regulator receiver domain S40542_RS09300 PF03705 CheR methyltransferase, all-alpha domain S40542_RS09300 PF01739 CheR methyltransferase, SAM binding domain S40542_RS09305 PF01584 CheW-like domain S40542_RS09310 PF01584 CheW-like domain S40542_RS09315 PF02203 Tar ligand binding domain homologue S40542_RS09315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS09315 PF00672 HAMP domain S40542_RS09320 PF09078 CheY binding S40542_RS09320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS09320 PF01584 CheW-like domain S40542_RS09320 PF02895 Signal transducing histidine kinase, homodimeric domain S40542_RS09320 PF01627 Hpt domain S40542_RS09330 PF00072 Response regulator receiver domain S40542_RS09335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS09350 PF08007 Cupin superfamily protein S40542_RS09355 PF00206 Lyase S40542_RS09355 PF08328 Adenylosuccinate lyase C-terminal S40542_RS09360 PF04356 Protein of unknown function (DUF489) S40542_RS09370 PF00849 RNA pseudouridylate synthase S40542_RS09375 PF03971 Monomeric isocitrate dehydrogenase S40542_RS09380 PF00313 'Cold-shock' DNA-binding domain S40542_RS09385 PF02617 ATP-dependent Clp protease adaptor protein ClpS S40542_RS09390 PF07724 AAA domain (Cdc48 subfamily) S40542_RS09390 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS09390 PF17871 AAA lid domain S40542_RS09390 PF02861 Clp amino terminal domain, pathogenicity island component S40542_RS09390 PF10431 C-terminal, D2-small domain, of ClpB protein S40542_RS09395 PF01176 Translation initiation factor 1A / IF-1 S40542_RS09400 PF04376 Arginine-tRNA-protein transferase, N terminus S40542_RS09400 PF04377 Arginine-tRNA-protein transferase, C terminus S40542_RS09405 PF03588 Leucyl/phenylalanyl-tRNA protein transferase S40542_RS09410 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS09415 PF13091 PLD-like domain S40542_RS09420 PF02311 AraC-like ligand binding domain S40542_RS09420 PF12833 Helix-turn-helix domain S40542_RS09445 PF12867 DinB superfamily S40542_RS09445 PF03781 Sulfatase-modifying factor enzyme 1 S40542_RS09450 PF10017 Histidine-specific methyltransferase, SAM-dependent S40542_RS09460 PF02867 Ribonucleotide reductase, barrel domain S40542_RS09460 PF03477 ATP cone domain S40542_RS09460 PF00317 Ribonucleotide reductase, all-alpha domain S40542_RS09465 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS09475 PF03989 DNA gyrase C-terminal domain, beta-propeller S40542_RS09475 PF00521 DNA gyrase/topoisomerase IV, subunit A S40542_RS09480 PF00266 Aminotransferase class-V S40542_RS09485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) S40542_RS09490 PF02224 Cytidylate kinase S40542_RS09495 PF00575 S1 RNA binding domain S40542_RS09500 PF00216 Bacterial DNA-binding protein S40542_RS09510 PF18073 Rubredoxin metal binding domain S40542_RS09515 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family S40542_RS09520 PF00875 DNA photolyase S40542_RS09520 PF03441 FAD binding domain of DNA photolyase S40542_RS09525 PF03441 FAD binding domain of DNA photolyase S40542_RS09525 PF00875 DNA photolyase S40542_RS09530 PF04244 Deoxyribodipyrimidine photo-lyase-related protein S40542_RS09545 PF00593 TonB dependent receptor S40542_RS09545 PF07660 Secretin and TonB N terminus short domain S40542_RS09545 PF07715 TonB-dependent Receptor Plug Domain S40542_RS09565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase S40542_RS09565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S40542_RS09570 PF00672 HAMP domain S40542_RS09570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS09575 PF00034 Cytochrome c S40542_RS09575 PF03150 Di-haem cytochrome c peroxidase S40542_RS09590 PF00175 Oxidoreductase NAD-binding domain S40542_RS09590 PF00042 Globin S40542_RS09590 PF00970 Oxidoreductase FAD-binding domain S40542_RS09600 PF01336 OB-fold nucleic acid binding domain S40542_RS09600 PF00152 tRNA synthetases class II (D, K and N) S40542_RS09620 PF00202 Aminotransferase class-III S40542_RS09625 PF06968 Biotin and Thiamin Synthesis associated domain S40542_RS09625 PF04055 Radical SAM superfamily S40542_RS09630 PF00155 Aminotransferase class I and II S40542_RS09635 PF08241 Methyltransferase domain S40542_RS09645 PF01483 Proprotein convertase P-domain S40542_RS09645 PF00082 Subtilase family S40542_RS09650 PF01370 NAD dependent epimerase/dehydratase family S40542_RS09660 PF01548 Transposase S40542_RS09660 PF02371 Transposase IS116/IS110/IS902 family S40542_RS09690 PF01554 MatE S40542_RS09695 PF00677 Lumazine binding domain S40542_RS09705 PF03881 Fructosamine kinase S40542_RS09720 PF01979 Amidohydrolase family S40542_RS09740 PF05368 NmrA-like family S40542_RS09745 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain S40542_RS09745 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase S40542_RS09775 PF01810 LysE type translocator S40542_RS09830 PF12729 Four helix bundle sensory module for signal transduction S40542_RS09830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS09830 PF00672 HAMP domain S40542_RS09845 PF00155 Aminotransferase class I and II S40542_RS09880 PF02567 Phenazine biosynthesis-like protein S40542_RS09895 PF01494 FAD binding domain S40542_RS09900 PF17990 L-Lysine epsilon oxidase N-terminal S40542_RS09900 PF18417 L-lysine epsilon oxidase C-terminal domain S40542_RS09920 PF17151 Periplasmic sensor domain S40542_RS09920 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS09925 PF08453 Peptidase family M9 N-terminal S40542_RS09925 PF18496 Collagenase G catalytic helper subdomain S40542_RS09925 PF01752 Collagenase S40542_RS09945 PF00144 Beta-lactamase S40542_RS09950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS09950 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS09950 PF08446 PAS fold S40542_RS09950 PF00360 Phytochrome region S40542_RS09950 PF01590 GAF domain S40542_RS09955 PF00196 Bacterial regulatory proteins, luxR family S40542_RS09955 PF00072 Response regulator receiver domain S40542_RS09960 PF00563 EAL domain S40542_RS09960 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS09960 PF03707 Bacterial signalling protein N terminal repeat S40542_RS09965 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS09965 PF00563 EAL domain S40542_RS09965 PF03707 Bacterial signalling protein N terminal repeat S40542_RS09970 PF09456 RcsC Alpha-Beta-Loop (ABL) S40542_RS09970 PF00072 Response regulator receiver domain S40542_RS09970 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS09970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS09980 PF00672 HAMP domain S40542_RS09980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS09980 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS09980 PF00072 Response regulator receiver domain S40542_RS09980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS09980 PF01627 Hpt domain S40542_RS09990 PF13509 S1 domain S40542_RS09990 PF17783 CvfB-like winged helix domain S40542_RS09995 PF00271 Helicase conserved C-terminal domain S40542_RS09995 PF00270 DEAD/DEAH box helicase S40542_RS10000 PF17773 UPF0176 acylphosphatase like domain S40542_RS10000 PF00581 Rhodanese-like domain S40542_RS10005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS10005 PF06580 Histidine kinase S40542_RS10005 PF00672 HAMP domain S40542_RS10005 PF02743 Cache domain S40542_RS10010 PF04397 LytTr DNA-binding domain S40542_RS10010 PF00072 Response regulator receiver domain S40542_RS10015 PF00722 Glycosyl hydrolases family 16 S40542_RS10025 PF07690 Major Facilitator Superfamily S40542_RS10030 PF14310 Fibronectin type III-like domain S40542_RS10030 PF00933 Glycosyl hydrolase family 3 N terminal domain S40542_RS10030 PF01915 Glycosyl hydrolase family 3 C-terminal domain S40542_RS10040 PF12729 Four helix bundle sensory module for signal transduction S40542_RS10040 PF00672 HAMP domain S40542_RS10040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS10050 PF00128 Alpha amylase, catalytic domain S40542_RS10050 PF02806 Alpha amylase, C-terminal all-beta domain S40542_RS10055 PF00128 Alpha amylase, catalytic domain S40542_RS10055 PF02806 Alpha amylase, C-terminal all-beta domain S40542_RS10060 PF04463 Protein of unknown function (DUF523) S40542_RS10065 PF00999 Sodium/hydrogen exchanger family S40542_RS10085 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS10090 PF01327 Polypeptide deformylase S40542_RS10100 PF04237 YjbR S40542_RS10105 PF01810 LysE type translocator S40542_RS10115 PF00664 ABC transporter transmembrane region S40542_RS10115 PF03412 Peptidase C39 family S40542_RS10115 PF00005 ABC transporter S40542_RS10120 PF13533 Biotin-lipoyl like S40542_RS10130 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) S40542_RS10130 PF06594 Haemolysin-type calcium binding protein related domain S40542_RS10140 PF00486 Transcriptional regulatory protein, C terminal S40542_RS10140 PF18500 CadC C-terminal domain 1 S40542_RS10145 PF08447 PAS fold S40542_RS10145 PF13426 PAS domain S40542_RS10145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS10155 PF00909 Ammonium Transporter Family S40542_RS10155 PF00672 HAMP domain S40542_RS10165 PF01925 Sulfite exporter TauE/SafE S40542_RS10175 PF08267 Cobalamin-independent synthase, N-terminal domain S40542_RS10175 PF01717 Cobalamin-independent synthase, Catalytic domain S40542_RS10180 PF08534 Redoxin S40542_RS10180 PF00462 Glutaredoxin S40542_RS10185 PF13537 Glutamine amidotransferase domain S40542_RS10185 PF00733 Asparagine synthase S40542_RS10190 PF01470 Pyroglutamyl peptidase S40542_RS10205 PF02626 Carboxyltransferase domain, subdomain A and B S40542_RS10210 PF02682 Carboxyltransferase domain, subdomain C and D S40542_RS10215 PF00883 Cytosol aminopeptidase family, catalytic domain S40542_RS10215 PF02789 Cytosol aminopeptidase family, N-terminal domain S40542_RS10220 PF01625 Peptide methionine sulfoxide reductase S40542_RS10245 PF00563 EAL domain S40542_RS10245 PF00360 Phytochrome region S40542_RS10245 PF01590 GAF domain S40542_RS10245 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS10260 PF00731 AIR carboxylase S40542_RS10265 PF02222 ATP-grasp domain S40542_RS10265 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain S40542_RS10270 PF03601 Conserved hypothetical protein 698 S40542_RS10290 PF03949 Malic enzyme, NAD binding domain S40542_RS10290 PF00390 Malic enzyme, N-terminal domain S40542_RS10295 PF13737 Transposase DDE domain S40542_RS10325 PF00072 Response regulator receiver domain S40542_RS10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS10325 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS10325 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS10325 PF01627 Hpt domain S40542_RS10325 PF00672 HAMP domain S40542_RS10360 PF04233 Phage Mu protein F like protein S40542_RS10630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS10630 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS10630 PF09308 LuxQ, periplasmic S40542_RS10630 PF00072 Response regulator receiver domain S40542_RS10635 PF05163 DinB family S40542_RS10660 PF01625 Peptide methionine sulfoxide reductase S40542_RS10665 PF00892 EamA-like transporter family S40542_RS10675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS10675 PF08447 PAS fold S40542_RS10680 PF00762 Ferrochelatase S40542_RS10685 PF13188 PAS domain S40542_RS10685 PF03707 Bacterial signalling protein N terminal repeat S40542_RS10685 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS10685 PF00563 EAL domain S40542_RS10690 PF03606 C4-dicarboxylate anaerobic carrier S40542_RS10695 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS10695 PF17151 Periplasmic sensor domain S40542_RS10715 PF00268 Ribonucleotide reductase, small chain S40542_RS10720 PF00111 2Fe-2S iron-sulfur cluster binding domain S40542_RS10730 PF00593 TonB dependent receptor S40542_RS10730 PF07715 TonB-dependent Receptor Plug Domain S40542_RS10755 PF18030 RimK PreATP-grasp domain S40542_RS10755 PF08443 RimK-like ATP-grasp domain S40542_RS10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS10760 PF03466 LysR substrate binding domain S40542_RS10770 PF01679 Proteolipid membrane potential modulator S40542_RS10795 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS10810 PF01593 Flavin containing amine oxidoreductase S40542_RS10850 PF00106 short chain dehydrogenase S40542_RS10880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family S40542_RS10880 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS10885 PF01343 Peptidase family S49 S40542_RS10890 PF17763 Glutaminase/Asparaginase C-terminal domain S40542_RS10890 PF00710 Asparaginase, N-terminal S40542_RS10895 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain S40542_RS10895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase S40542_RS10900 PF02887 Pyruvate kinase, alpha/beta domain S40542_RS10900 PF00224 Pyruvate kinase, barrel domain S40542_RS10905 PF00072 Response regulator receiver domain S40542_RS10905 PF04397 LytTr DNA-binding domain S40542_RS10910 PF06580 Histidine kinase S40542_RS10910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS10910 PF00672 HAMP domain S40542_RS10910 PF02743 Cache domain S40542_RS10915 PF00593 TonB dependent receptor S40542_RS10915 PF07715 TonB-dependent Receptor Plug Domain S40542_RS10925 PF01053 Cys/Met metabolism PLP-dependent enzyme S40542_RS10955 PF17391 Urocanase N-terminal domain S40542_RS10955 PF17392 Urocanase C-terminal domain S40542_RS10955 PF01175 Urocanase Rossmann-like domain S40542_RS10960 PF00221 Aromatic amino acid lyase S40542_RS10965 PF03466 LysR substrate binding domain S40542_RS10965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS10970 PF00082 Subtilase family S40542_RS10970 PF05922 Peptidase inhibitor I9 S40542_RS10980 PF00127 Copper binding proteins, plastocyanin/azurin family S40542_RS11000 PF03061 Thioesterase superfamily S40542_RS11005 PF01551 Peptidase family M23 S40542_RS11015 PF07977 FabA-like domain S40542_RS11020 PF04957 Ribosome modulation factor S40542_RS11025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S40542_RS11025 PF02403 Seryl-tRNA synthetase N-terminal domain S40542_RS11030 PF02537 CrcB-like protein, Camphor Resistance (CrcB) S40542_RS11035 PF12002 MgsA AAA+ ATPase C terminal S40542_RS11035 PF16193 AAA C-terminal domain S40542_RS11035 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS11040 PF03548 Outer membrane lipoprotein carrier protein LolA S40542_RS11045 PF01580 FtsK/SpoIIIE family S40542_RS11045 PF09397 Ftsk gamma domain S40542_RS11045 PF13491 4TM region of DNA translocase FtsK/SpoIIIE S40542_RS11045 PF17854 FtsK alpha domain S40542_RS11050 PF01037 Lrp/AsnC ligand binding domain S40542_RS11055 PF05222 Alanine dehydrogenase/PNT, N-terminal domain S40542_RS11055 PF01262 Alanine dehydrogenase/PNT, C-terminal domain S40542_RS11060 PF08668 HDOD domain S40542_RS11060 PF00563 EAL domain S40542_RS11065 PF00672 HAMP domain S40542_RS11065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS11065 PF02743 Cache domain S40542_RS11075 PF04371 Porphyromonas-type peptidyl-arginine deiminase S40542_RS11080 PF00795 Carbon-nitrogen hydrolase S40542_RS11085 PF00270 DEAD/DEAH box helicase S40542_RS11085 PF00271 Helicase conserved C-terminal domain S40542_RS11085 PF17757 UvrB interaction domain S40542_RS11085 PF02559 CarD-like/TRCF domain S40542_RS11085 PF03461 TRCF domain S40542_RS11135 PF12833 Helix-turn-helix domain S40542_RS11135 PF00072 Response regulator receiver domain S40542_RS11140 PF00486 Transcriptional regulatory protein, C terminal S40542_RS11140 PF00072 Response regulator receiver domain S40542_RS11185 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS11185 PF00672 HAMP domain S40542_RS11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS11190 PF02954 Bacterial regulatory protein, Fis family S40542_RS11190 PF00072 Response regulator receiver domain S40542_RS11190 PF00158 Sigma-54 interaction domain S40542_RS11195 PF02687 FtsX-like permease family S40542_RS11195 PF00005 ABC transporter S40542_RS11195 PF12704 MacB-like periplasmic core domain S40542_RS11200 PF02687 FtsX-like permease family S40542_RS11200 PF12704 MacB-like periplasmic core domain S40542_RS11200 PF00005 ABC transporter S40542_RS11215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S40542_RS11215 PF03129 Anticodon binding domain S40542_RS11215 PF02824 TGS domain S40542_RS11215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain S40542_RS11235 PF03793 PASTA domain S40542_RS11235 PF00069 Protein kinase domain S40542_RS11255 PF07715 TonB-dependent Receptor Plug Domain S40542_RS11255 PF00593 TonB dependent receptor S40542_RS11270 PF08329 Chitinase A, N-terminal domain S40542_RS11270 PF00704 Glycosyl hydrolases family 18 S40542_RS11315 PF04264 YceI-like domain S40542_RS11320 PF01292 Prokaryotic cytochrome b561 S40542_RS11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS11325 PF03466 LysR substrate binding domain S40542_RS11335 PF00916 Sulfate permease family S40542_RS11335 PF01740 STAS domain S40542_RS11340 PF01037 Lrp/AsnC ligand binding domain S40542_RS11340 PF13404 AsnC-type helix-turn-helix domain S40542_RS11345 PF00753 Metallo-beta-lactamase superfamily S40542_RS11355 PF00106 short chain dehydrogenase S40542_RS11360 PF00453 Ribosomal protein L20 S40542_RS11365 PF01632 Ribosomal protein L35 S40542_RS11370 PF05198 Translation initiation factor IF-3, N-terminal domain S40542_RS11370 PF00707 Translation initiation factor IF-3, C-terminal domain S40542_RS11375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain S40542_RS11375 PF03129 Anticodon binding domain S40542_RS11375 PF02824 TGS domain S40542_RS11375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S40542_RS11390 PF00664 ABC transporter transmembrane region S40542_RS11390 PF00005 ABC transporter S40542_RS11400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S40542_RS11405 PF00873 AcrB/AcrD/AcrF family S40542_RS11410 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS11410 PF07694 5TMR of 5TMR-LYT S40542_RS11420 PF00005 ABC transporter S40542_RS11425 PF00561 alpha/beta hydrolase fold S40542_RS11430 PF08272 Topoisomerase I zinc-ribbon-like S40542_RS11430 PF01396 Topoisomerase DNA binding C4 zinc finger S40542_RS11430 PF01751 Toprim domain S40542_RS11430 PF01131 DNA topoisomerase S40542_RS11440 PF00375 Sodium:dicarboxylate symporter family S40542_RS11445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase S40542_RS11445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase S40542_RS11450 PF00255 Glutathione peroxidase S40542_RS11455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S40542_RS11455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S40542_RS11460 PF00209 Sodium:neurotransmitter symporter family S40542_RS11470 PF00696 Amino acid kinase family S40542_RS11470 PF01842 ACT domain S40542_RS11475 PF03600 Citrate transporter S40542_RS11500 PF00266 Aminotransferase class-V S40542_RS11505 PF02657 Fe-S metabolism associated domain S40542_RS11510 PF00899 ThiF family S40542_RS11515 PF00849 RNA pseudouridylate synthase S40542_RS11520 PF02348 Cytidylyltransferase S40542_RS11525 PF03966 Trm112p-like protein S40542_RS11530 PF02606 Tetraacyldisaccharide-1-P 4'-kinase S40542_RS11535 PF00005 ABC transporter S40542_RS11535 PF00664 ABC transporter transmembrane region S40542_RS11540 PF00753 Metallo-beta-lactamase superfamily S40542_RS11540 PF03772 Competence protein S40542_RS11555 PF00005 ABC transporter S40542_RS11555 PF16326 ABC transporter C-terminal domain S40542_RS11555 PF12848 ABC transporter S40542_RS11565 PF10672 S-adenosylmethionine-dependent methyltransferase S40542_RS11565 PF01170 Putative RNA methylase family UPF0020 S40542_RS11565 PF02926 THUMP domain S40542_RS11570 PF07126 Cell-division protein ZapC S40542_RS11575 PF01180 Dihydroorotate dehydrogenase S40542_RS11580 PF05088 Bacterial NAD-glutamate dehydrogenase S40542_RS11590 PF14870 Photosynthesis system II assembly factor YCF48 S40542_RS11595 PF07044 Protein of unknown function (DUF1329) S40542_RS11610 PF01433 Peptidase family M1 domain S40542_RS11610 PF17432 Domain of unknown function (DUF3458_C) ARM repeats S40542_RS11610 PF11940 Domain of unknown function (DUF3458) Ig-like fold S40542_RS11615 PF03553 Na+/H+ antiporter family S40542_RS11620 PF11818 C-terminal domain of tail specific protease (DUF3340) S40542_RS11620 PF00595 PDZ domain S40542_RS11620 PF03572 Peptidase family S41 S40542_RS11620 PF17804 Tail specific protease N-terminal domain S40542_RS11625 PF17516 ProQ C-terminal domain S40542_RS11625 PF04352 ProQ/FINO family S40542_RS11635 PF13185 GAF domain S40542_RS11665 PF01027 Inhibitor of apoptosis-promoting Bax1 S40542_RS11675 PF02635 DsrE/DsrF-like family S40542_RS11685 PF04358 DsrC like protein S40542_RS11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS11700 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS11700 PF09308 LuxQ, periplasmic S40542_RS11700 PF00072 Response regulator receiver domain S40542_RS11705 PF07715 TonB-dependent Receptor Plug Domain S40542_RS11705 PF00593 TonB dependent receptor S40542_RS11730 PF01171 PP-loop family S40542_RS11735 PF02817 e3 binding domain S40542_RS11735 PF00364 Biotin-requiring enzyme S40542_RS11735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) S40542_RS11740 PF02779 Transketolase, pyrimidine binding domain S40542_RS11740 PF02780 Transketolase, C-terminal domain S40542_RS11745 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal S40542_RS11745 PF00676 Dehydrogenase E1 component S40542_RS11750 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family S40542_RS11755 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S40542_RS11755 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S40542_RS11755 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S40542_RS11755 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S40542_RS11760 PF03925 SeqA protein C-terminal domain S40542_RS11760 PF17206 SeqA protein N-terminal domain S40542_RS11765 PF12697 Alpha/beta hydrolase family S40542_RS11775 PF01402 Ribbon-helix-helix protein, copG family S40542_RS11780 PF00258 Flavodoxin S40542_RS11785 PF01475 Ferric uptake regulator family S40542_RS11805 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain S40542_RS11805 PF00749 tRNA synthetases class I (E and Q), catalytic domain S40542_RS11990 PF01434 Peptidase family M41 S40542_RS11990 PF17862 AAA+ lid domain S40542_RS11990 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS12030 PF02629 CoA binding domain S40542_RS12030 PF00549 CoA-ligase S40542_RS12035 PF00549 CoA-ligase S40542_RS12035 PF08442 ATP-grasp domain S40542_RS12040 PF00364 Biotin-requiring enzyme S40542_RS12040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) S40542_RS12040 PF02817 e3 binding domain S40542_RS12045 PF00676 Dehydrogenase E1 component S40542_RS12045 PF16870 2-oxoglutarate dehydrogenase C-terminal S40542_RS12045 PF02779 Transketolase, pyrimidine binding domain S40542_RS12045 PF16078 2-oxoglutarate dehydrogenase N-terminus S40542_RS12050 PF13085 2Fe-2S iron-sulfur cluster binding domain S40542_RS12055 PF00890 FAD binding domain S40542_RS12055 PF02910 Fumarate reductase flavoprotein C-term S40542_RS12060 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit S40542_RS12065 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit S40542_RS12070 PF00285 Citrate synthase, C-terminal domain S40542_RS12075 PF00708 Acylphosphatase S40542_RS12080 PF07715 TonB-dependent Receptor Plug Domain S40542_RS12080 PF00593 TonB dependent receptor S40542_RS12090 PF03372 Endonuclease/Exonuclease/phosphatase family S40542_RS12100 PF13847 Methyltransferase domain S40542_RS12105 PF03413 Peptidase propeptide and YPEB domain S40542_RS12105 PF01447 Thermolysin metallopeptidase, catalytic domain S40542_RS12105 PF07504 Fungalysin/Thermolysin Propeptide Motif S40542_RS12105 PF02868 Thermolysin metallopeptidase, alpha-helical domain S40542_RS12110 PF08453 Peptidase family M9 N-terminal S40542_RS12110 PF01752 Collagenase S40542_RS12115 PF04217 Protein of unknown function, DUF412 S40542_RS12120 PF00871 Acetokinase family S40542_RS12125 PF01515 Phosphate acetyl/butaryl transferase S40542_RS12125 PF07085 DRTGG domain S40542_RS12135 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 S40542_RS12140 PF03960 ArsC family S40542_RS12145 PF01546 Peptidase family M20/M25/M40 S40542_RS12145 PF07687 Peptidase dimerisation domain S40542_RS12150 PF02557 D-alanyl-D-alanine carboxypeptidase S40542_RS12155 PF00155 Aminotransferase class I and II S40542_RS12175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS12175 PF00072 Response regulator receiver domain S40542_RS12175 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS12175 PF09308 LuxQ, periplasmic S40542_RS12180 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS12180 PF01590 GAF domain S40542_RS12180 PF00563 EAL domain S40542_RS12180 PF00360 Phytochrome region S40542_RS12185 PF10609 NUBPL iron-transfer P-loop NTPase S40542_RS12190 PF01588 Putative tRNA binding domain S40542_RS12190 PF09334 tRNA synthetases class I (M) S40542_RS12190 PF08264 Anticodon-binding domain of tRNA S40542_RS12200 PF00497 Bacterial extracellular solute-binding proteins, family 3 S40542_RS12200 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS12210 PF01026 TatD related DNase S40542_RS12220 PF09115 DNA polymerase III, delta subunit, C terminal S40542_RS12225 PF02223 Thymidylate kinase S40542_RS12230 PF00563 EAL domain S40542_RS12230 PF13426 PAS domain S40542_RS12230 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS12235 PF05191 Adenylate kinase, active site lid S40542_RS12240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain S40542_RS12240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain S40542_RS12245 PF01081 KDPG and KHG aldolase S40542_RS12250 PF00920 Dehydratase family S40542_RS12255 PF00356 Bacterial regulatory proteins, lacI family S40542_RS12260 PF02685 Glucokinase S40542_RS12265 PF00356 Bacterial regulatory proteins, lacI family S40542_RS12280 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS12280 PF17151 Periplasmic sensor domain S40542_RS12295 PF00005 ABC transporter S40542_RS12295 PF09383 NIL domain S40542_RS12315 PF01966 HD domain S40542_RS12320 PF00211 Adenylate and Guanylate cyclase catalytic domain S40542_RS12345 PF04996 Succinylarginine dihydrolase S40542_RS12365 PF01180 Dihydroorotate dehydrogenase S40542_RS12375 PF00116 Cytochrome C oxidase subunit II, periplasmic domain S40542_RS12375 PF06481 COX Aromatic Rich Motif S40542_RS12380 PF00115 Cytochrome C and Quinol oxidase polypeptide I S40542_RS12385 PF00510 Cytochrome c oxidase subunit III S40542_RS12390 PF03626 Prokaryotic Cytochrome C oxidase subunit IV S40542_RS12395 PF01040 UbiA prenyltransferase family S40542_RS12400 PF02630 SCO1/SenC S40542_RS12420 PF13737 Transposase DDE domain S40542_RS12465 PF00766 Electron transfer flavoprotein FAD-binding domain S40542_RS12465 PF01012 Electron transfer flavoprotein domain S40542_RS12470 PF01012 Electron transfer flavoprotein domain S40542_RS12495 PF01042 Endoribonuclease L-PSP S40542_RS12500 PF01042 Endoribonuclease L-PSP S40542_RS12505 PF00072 Response regulator receiver domain S40542_RS12510 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS12520 PF02525 Flavodoxin-like fold S40542_RS12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS12525 PF03466 LysR substrate binding domain S40542_RS12540 PF00266 Aminotransferase class-V S40542_RS12570 PF01565 FAD binding domain S40542_RS12570 PF08031 Berberine and berberine like S40542_RS12575 PF13426 PAS domain S40542_RS12575 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS12575 PF00672 HAMP domain S40542_RS12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS12580 PF00072 Response regulator receiver domain S40542_RS12580 PF00486 Transcriptional regulatory protein, C terminal S40542_RS12585 PF02789 Cytosol aminopeptidase family, N-terminal domain S40542_RS12585 PF00883 Cytosol aminopeptidase family, catalytic domain S40542_RS12620 PF00282 Pyridoxal-dependent decarboxylase conserved domain S40542_RS12625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S40542_RS12645 PF00753 Metallo-beta-lactamase superfamily S40542_RS12650 PF00486 Transcriptional regulatory protein, C terminal S40542_RS12650 PF18500 CadC C-terminal domain 1 S40542_RS12680 PF00326 Prolyl oligopeptidase family S40542_RS12680 PF07676 WD40-like Beta Propeller Repeat S40542_RS12680 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region S40542_RS12685 PF13411 MerR HTH family regulatory protein S40542_RS12685 PF07739 TipAS antibiotic-recognition domain S40542_RS12690 PF10990 Protein of unknown function (DUF2809) S40542_RS12725 PF01693 Caulimovirus viroplasmin S40542_RS12735 PF01546 Peptidase family M20/M25/M40 S40542_RS12735 PF07687 Peptidase dimerisation domain S40542_RS12765 PF11954 Domain of unknown function (DUF3471) S40542_RS12765 PF00144 Beta-lactamase S40542_RS12770 PF00144 Beta-lactamase S40542_RS12820 PF00072 Response regulator receiver domain S40542_RS12820 PF00486 Transcriptional regulatory protein, C terminal S40542_RS12830 PF00535 Glycosyl transferase family 2 S40542_RS12845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S40542_RS12885 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS12890 PF01593 Flavin containing amine oxidoreductase S40542_RS12905 PF01243 Pyridoxamine 5'-phosphate oxidase S40542_RS12905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region S40542_RS12985 PF00144 Beta-lactamase S40542_RS12995 PF13737 Transposase DDE domain S40542_RS13010 PF13676 TIR domain S40542_RS13075 PF00264 Common central domain of tyrosinase S40542_RS13080 PF13683 Integrase core domain S40542_RS13080 PF13276 HTH-like domain S40542_RS13085 PF01527 Transposase S40542_RS13110 PF13737 Transposase DDE domain S40542_RS13125 PF10411 Disulfide bond isomerase protein N-terminus S40542_RS13125 PF13098 Thioredoxin-like domain S40542_RS13245 PF00589 Phage integrase family S40542_RS13245 PF13495 Phage integrase, N-terminal SAM-like domain S40542_RS13255 PF03060 Nitronate monooxygenase S40542_RS13255 PF00698 Acyl transferase domain S40542_RS13260 PF00698 Acyl transferase domain S40542_RS13265 PF02543 Carbamoyltransferase N-terminus S40542_RS13265 PF16861 Carbamoyltransferase C-terminus S40542_RS13270 PF08659 KR domain S40542_RS13270 PF00550 Phosphopantetheine attachment site S40542_RS13270 PF13193 AMP-binding enzyme C-terminal domain S40542_RS13270 PF00668 Condensation domain S40542_RS13270 PF16197 Ketoacyl-synthetase C-terminal extension S40542_RS13270 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS13270 PF14765 Polyketide synthase dehydratase S40542_RS13270 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS13270 PF00501 AMP-binding enzyme S40542_RS13295 PF01725 Ham1 family S40542_RS13305 PF00106 short chain dehydrogenase S40542_RS13310 PF13193 AMP-binding enzyme C-terminal domain S40542_RS13310 PF00975 Thioesterase domain S40542_RS13310 PF00550 Phosphopantetheine attachment site S40542_RS13310 PF00668 Condensation domain S40542_RS13310 PF00501 AMP-binding enzyme S40542_RS13315 PF00067 Cytochrome P450 S40542_RS13340 PF13411 MerR HTH family regulatory protein S40542_RS13350 PF13737 Transposase DDE domain S40542_RS13355 PF03372 Endonuclease/Exonuclease/phosphatase family S40542_RS13370 PF01810 LysE type translocator S40542_RS13415 PF03692 Putative zinc- or iron-chelating domain S40542_RS13425 PF00873 AcrB/AcrD/AcrF family S40542_RS13435 PF09317 Domain of unknown function (DUF1974) S40542_RS13435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain S40542_RS13435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain S40542_RS13435 PF02770 Acyl-CoA dehydrogenase, middle domain S40542_RS13450 PF00005 ABC transporter S40542_RS13450 PF13732 Domain of unknown function (DUF4162) S40542_RS13455 PF00583 Acetyltransferase (GNAT) family S40542_RS13460 PF13460 NAD(P)H-binding S40542_RS13470 PF09330 D-lactate dehydrogenase, membrane binding S40542_RS13470 PF01565 FAD binding domain S40542_RS13485 PF01554 MatE S40542_RS13495 PF00072 Response regulator receiver domain S40542_RS13495 PF00486 Transcriptional regulatory protein, C terminal S40542_RS13500 PF00072 Response regulator receiver domain S40542_RS13505 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS13505 PF00072 Response regulator receiver domain S40542_RS13505 PF00672 HAMP domain S40542_RS13505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS13505 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS13505 PF01627 Hpt domain S40542_RS13510 PF13673 Acetyltransferase (GNAT) domain S40542_RS13510 PF00583 Acetyltransferase (GNAT) family S40542_RS13535 PF07715 TonB-dependent Receptor Plug Domain S40542_RS13535 PF00593 TonB dependent receptor S40542_RS13555 PF01022 Bacterial regulatory protein, arsR family S40542_RS13560 PF01758 Sodium Bile acid symporter family S40542_RS13585 PF13409 Glutathione S-transferase, N-terminal domain S40542_RS13590 PF07681 DoxX S40542_RS13605 PF03466 LysR substrate binding domain S40542_RS13605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS13610 PF03466 LysR substrate binding domain S40542_RS13615 PF00141 Peroxidase S40542_RS13625 PF13302 Acetyltransferase (GNAT) domain S40542_RS13645 PF02203 Tar ligand binding domain homologue S40542_RS13645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS13645 PF00672 HAMP domain S40542_RS13675 PF02913 FAD linked oxidases, C-terminal domain S40542_RS13675 PF13183 4Fe-4S dicluster domain S40542_RS13675 PF01565 FAD binding domain S40542_RS13680 PF02278 Polysaccharide lyase family 8, super-sandwich domain S40542_RS13680 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain S40542_RS13680 PF09092 Lyase, N terminal S40542_RS13680 PF09093 Lyase, catalytic S40542_RS13710 PF07715 TonB-dependent Receptor Plug Domain S40542_RS13710 PF00593 TonB dependent receptor S40542_RS13725 PF00296 Luciferase-like monooxygenase S40542_RS13730 PF08543 Phosphomethylpyrimidine kinase S40542_RS13745 PF00501 AMP-binding enzyme S40542_RS13745 PF13193 AMP-binding enzyme C-terminal domain S40542_RS13745 PF00668 Condensation domain S40542_RS13745 PF07993 Male sterility protein S40542_RS13745 PF00550 Phosphopantetheine attachment site S40542_RS13750 PF13193 AMP-binding enzyme C-terminal domain S40542_RS13750 PF00550 Phosphopantetheine attachment site S40542_RS13750 PF00668 Condensation domain S40542_RS13750 PF00501 AMP-binding enzyme S40542_RS13770 PF07977 FabA-like domain S40542_RS13780 PF00005 ABC transporter S40542_RS13785 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS13785 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS13795 PF01575 MaoC like domain S40542_RS13805 PF00221 Aromatic amino acid lyase S40542_RS13815 PF02678 Pirin S40542_RS13815 PF05726 Pirin C-terminal cupin domain S40542_RS13825 PF00326 Prolyl oligopeptidase family S40542_RS13825 PF07676 WD40-like Beta Propeller Repeat S40542_RS13840 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase S40542_RS13840 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase S40542_RS13845 PF00378 Enoyl-CoA hydratase/isomerase S40542_RS13850 PF00378 Enoyl-CoA hydratase/isomerase S40542_RS13855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain S40542_RS13855 PF02770 Acyl-CoA dehydrogenase, middle domain S40542_RS13855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain S40542_RS13860 PF00171 Aldehyde dehydrogenase family S40542_RS13865 PF00108 Thiolase, N-terminal domain S40542_RS13865 PF02803 Thiolase, C-terminal domain S40542_RS13870 PF09278 MerR, DNA binding S40542_RS13870 PF00376 MerR family regulatory protein S40542_RS13875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain S40542_RS13875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain S40542_RS13875 PF02770 Acyl-CoA dehydrogenase, middle domain S40542_RS13880 PF01039 Carboxyl transferase domain S40542_RS13885 PF00378 Enoyl-CoA hydratase/isomerase S40542_RS13890 PF02785 Biotin carboxylase C-terminal domain S40542_RS13890 PF00289 Biotin carboxylase, N-terminal domain S40542_RS13890 PF00364 Biotin-requiring enzyme S40542_RS13890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S40542_RS13895 PF00682 HMGL-like S40542_RS13900 PF01144 Coenzyme A transferase S40542_RS13905 PF01144 Coenzyme A transferase S40542_RS13910 PF01435 Peptidase family M48 S40542_RS13915 PF00672 HAMP domain S40542_RS13915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS13915 PF12729 Four helix bundle sensory module for signal transduction S40542_RS13925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain S40542_RS13925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain S40542_RS13930 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF S40542_RS13930 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF S40542_RS13930 PF01189 16S rRNA methyltransferase RsmB/F S40542_RS13940 PF00557 Metallopeptidase family M24 S40542_RS13950 PF02492 CobW/HypB/UreG, nucleotide-binding domain S40542_RS13950 PF07683 Cobalamin synthesis protein cobW C-terminal domain S40542_RS13965 PF06271 RDD family S40542_RS13970 PF17200 Single Cache domain 2 S40542_RS13970 PF00672 HAMP domain S40542_RS13970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS13975 PF00561 alpha/beta hydrolase fold S40542_RS13980 PF00072 Response regulator receiver domain S40542_RS13980 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS13980 PF09308 LuxQ, periplasmic S40542_RS13990 PF00144 Beta-lactamase S40542_RS14000 PF11412 Disulphide bond corrector protein DsbC S40542_RS14000 PF02683 Cytochrome C biogenesis protein transmembrane region S40542_RS14000 PF00085 Thioredoxin S40542_RS14015 PF00717 Peptidase S24-like S40542_RS14020 PF13438 Domain of unknown function (DUF4113) S40542_RS14020 PF11799 impB/mucB/samB family C-terminal domain S40542_RS14020 PF00817 impB/mucB/samB family S40542_RS14035 PF01261 Xylose isomerase-like TIM barrel S40542_RS14050 PF00732 GMC oxidoreductase S40542_RS14050 PF05199 GMC oxidoreductase S40542_RS14060 PF12706 Beta-lactamase superfamily domain S40542_RS14065 PF00205 Thiamine pyrophosphate enzyme, central domain S40542_RS14065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S40542_RS14065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S40542_RS14070 PF01609 Transposase DDE domain S40542_RS14070 PF13006 Insertion element 4 transposase N-terminal S40542_RS14085 PF00271 Helicase conserved C-terminal domain S40542_RS14085 PF00270 DEAD/DEAH box helicase S40542_RS14090 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin S40542_RS14095 PF00593 TonB dependent receptor S40542_RS14095 PF07715 TonB-dependent Receptor Plug Domain S40542_RS14100 PF01758 Sodium Bile acid symporter family S40542_RS14120 PF01979 Amidohydrolase family S40542_RS14140 PF00593 TonB dependent receptor S40542_RS14140 PF07715 TonB-dependent Receptor Plug Domain S40542_RS14150 PF01343 Peptidase family S49 S40542_RS14150 PF08496 Peptidase family S49 N-terminal S40542_RS14160 PF00106 short chain dehydrogenase S40542_RS14165 PF00849 RNA pseudouridylate synthase S40542_RS14165 PF01479 S4 domain S40542_RS14170 PF04079 Segregation and condensation complex subunit ScpB S40542_RS14175 PF02616 Segregation and condensation protein ScpA S40542_RS14180 PF01300 Telomere recombination S40542_RS14185 PF02811 PHP domain S40542_RS14190 PF04715 Anthranilate synthase component I, N terminal region S40542_RS14190 PF00425 chorismate binding enzyme S40542_RS14195 PF00117 Glutamine amidotransferase class-I S40542_RS14200 PF00591 Glycosyl transferase family, a/b domain S40542_RS14200 PF02885 Glycosyl transferase family, helical bundle domain S40542_RS14205 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase S40542_RS14205 PF00218 Indole-3-glycerol phosphate synthase S40542_RS14210 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS14215 PF00290 Tryptophan synthase alpha chain S40542_RS14220 PF00216 Bacterial DNA-binding protein S40542_RS14225 PF04279 Intracellular septation protein A S40542_RS14235 PF00209 Sodium:neurotransmitter symporter family S40542_RS14240 PF03795 YCII-related domain S40542_RS14250 PF00486 Transcriptional regulatory protein, C terminal S40542_RS14250 PF00072 Response regulator receiver domain S40542_RS14255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS14265 PF01594 AI-2E family transporter S40542_RS14270 PF01370 NAD dependent epimerase/dehydratase family S40542_RS14270 PF08338 Domain of unknown function (DUF1731) S40542_RS14275 PF13188 PAS domain S40542_RS14275 PF03707 Bacterial signalling protein N terminal repeat S40542_RS14275 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS14275 PF00563 EAL domain S40542_RS14285 PF00144 Beta-lactamase S40542_RS14295 PF06434 Aconitate hydratase 2 N-terminus S40542_RS14295 PF11791 Aconitate B N-terminal domain S40542_RS14295 PF00330 Aconitase family (aconitate hydratase) S40542_RS14305 PF07023 Protein of unknown function (DUF1315) S40542_RS14315 PF01235 Sodium:alanine symporter family S40542_RS14320 PF00246 Zinc carboxypeptidase S40542_RS14320 PF18027 Cytosolic carboxypeptidase N-terminal domain S40542_RS14325 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain S40542_RS14325 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain S40542_RS14335 PF05494 MlaC protein S40542_RS14340 PF03707 Bacterial signalling protein N terminal repeat S40542_RS14340 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS14340 PF00563 EAL domain S40542_RS14350 PF00586 AIR synthase related protein, N-terminal domain S40542_RS14350 PF02769 AIR synthase related protein, C-terminal domain S40542_RS14355 PF00551 Formyl transferase S40542_RS14365 PF13230 Glutamine amidotransferases class-II S40542_RS14375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS14380 PF12848 ABC transporter S40542_RS14380 PF00005 ABC transporter S40542_RS14395 PF02618 YceG-like family S40542_RS14400 PF01063 Amino-transferase class IV S40542_RS14405 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS14405 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS14410 PF00550 Phosphopantetheine attachment site S40542_RS14420 PF00698 Acyl transferase domain S40542_RS14425 PF02504 Fatty acid synthesis protein S40542_RS14430 PF01783 Ribosomal L32p protein family S40542_RS14435 PF02620 Large ribosomal RNA subunit accumulation protein YceD S40542_RS14440 PF02545 Maf-like protein S40542_RS14445 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS14450 PF00849 RNA pseudouridylate synthase S40542_RS14450 PF01479 S4 domain S40542_RS14455 PF00575 S1 RNA binding domain S40542_RS14455 PF12111 Polyribonucleotide phosphorylase C terminal S40542_RS14455 PF10150 Ribonuclease E/G family S40542_RS14460 PF01464 Transglycosylase SLT domain S40542_RS14460 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain S40542_RS14485 PF04245 37-kD nucleoid-associated bacterial protein S40542_RS14490 PF07208 Protein of unknown function (DUF1414) S40542_RS14495 PF00884 Sulfatase S40542_RS14495 PF11893 Domain of unknown function (DUF3413) S40542_RS14505 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) S40542_RS14510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS14510 PF03466 LysR substrate binding domain S40542_RS14515 PF02074 Carboxypeptidase Taq (M32) metallopeptidase S40542_RS14555 PF13538 UvrD-like helicase C-terminal domain S40542_RS14560 PF12705 PD-(D/E)XK nuclease superfamily S40542_RS14560 PF00580 UvrD/REP helicase N-terminal domain S40542_RS14560 PF13361 UvrD-like helicase C-terminal domain S40542_RS14565 PF17946 RecC C-terminal domain S40542_RS14570 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS14580 PF07714 Protein tyrosine kinase S40542_RS14590 PF02445 Quinolinate synthetase A protein S40542_RS14650 PF16331 TolA binding protein trimerisation S40542_RS14650 PF13174 Tetratricopeptide repeat S40542_RS14655 PF00691 OmpA family S40542_RS14660 PF04052 TolB amino-terminal domain S40542_RS14660 PF07676 WD40-like Beta Propeller Repeat S40542_RS14670 PF02472 Biopolymer transport protein ExbD/TolR S40542_RS14675 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS14680 PF17864 RuvB AAA lid domain S40542_RS14680 PF05496 Holliday junction DNA helicase RuvB P-loop domain S40542_RS14680 PF05491 RuvB C-terminal winged helix domain S40542_RS14685 PF07499 RuvA, C-terminal domain S40542_RS14685 PF01330 RuvA N terminal domain S40542_RS14690 PF02075 Crossover junction endodeoxyribonuclease RuvC S40542_RS14695 PF00152 tRNA synthetases class II (D, K and N) S40542_RS14695 PF01336 OB-fold nucleic acid binding domain S40542_RS14695 PF02938 GAD domain S40542_RS14700 PF01904 Protein of unknown function DUF72 S40542_RS14705 PF01863 Protein of unknown function DUF45 S40542_RS14715 PF01025 GrpE S40542_RS14720 PF01628 HrcA protein C terminal domain S40542_RS14720 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding S40542_RS14725 PF01513 ATP-NAD kinase S40542_RS14735 PF02463 RecF/RecN/SMC N terminal domain S40542_RS14740 PF01292 Prokaryotic cytochrome b561 S40542_RS14745 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS14745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster S40542_RS14750 PF01493 GXGXG motif S40542_RS14750 PF00310 Glutamine amidotransferases class-II S40542_RS14750 PF04898 Glutamate synthase central domain S40542_RS14750 PF01645 Conserved region in glutamate synthase S40542_RS14755 PF00462 Glutaredoxin S40542_RS14760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain S40542_RS14760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain S40542_RS14765 PF06798 PrkA serine protein kinase C-terminal domain S40542_RS14765 PF08298 PrkA AAA domain S40542_RS14770 PF04285 Protein of unknown function (DUF444) S40542_RS14775 PF04293 SpoVR like protein S40542_RS14780 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS14780 PF17158 Membrane-associated sensor, integral membrane domain S40542_RS14785 PF01339 CheB methylesterase S40542_RS14785 PF00072 Response regulator receiver domain S40542_RS14790 PF08534 Redoxin S40542_RS14795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS14795 PF00183 Hsp90 protein S40542_RS14825 PF02132 RecR protein S40542_RS14825 PF13662 Toprim domain S40542_RS14835 PF01925 Sulfite exporter TauE/SafE S40542_RS14840 PF01717 Cobalamin-independent synthase, Catalytic domain S40542_RS14840 PF08267 Cobalamin-independent synthase, N-terminal domain S40542_RS14850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS14850 PF03466 LysR substrate binding domain S40542_RS14860 PF02575 YbaB/EbfC DNA-binding family S40542_RS14865 PF12170 DNA polymerase III tau subunit V interacting with alpha S40542_RS14865 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding S40542_RS14865 PF12169 DNA polymerase III subunits gamma and tau domain III S40542_RS14870 PF00156 Phosphoribosyl transferase domain S40542_RS14880 PF05114 Protein of unknown function (DUF692) S40542_RS14890 PF01207 Dihydrouridine synthase (Dus) S40542_RS14915 PF02472 Biopolymer transport protein ExbD/TolR S40542_RS14920 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS14925 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS14935 PF00302 Chloramphenicol acetyltransferase S40542_RS14940 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain S40542_RS14940 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase S40542_RS14950 PF00425 chorismate binding enzyme S40542_RS14950 PF04715 Anthranilate synthase component I, N terminal region S40542_RS14960 PF03313 Serine dehydratase alpha chain S40542_RS14960 PF03315 Serine dehydratase beta chain S40542_RS14965 PF03466 LysR substrate binding domain S40542_RS14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS14975 PF00860 Permease family S40542_RS14990 PF02810 SEC-C motif S40542_RS15020 PF07885 Ion channel S40542_RS15025 PF01966 HD domain S40542_RS15030 PF17785 PUA-like domain S40542_RS15030 PF10672 S-adenosylmethionine-dependent methyltransferase S40542_RS15035 PF04151 Bacterial pre-peptidase C-terminal domain S40542_RS15035 PF05922 Peptidase inhibitor I9 S40542_RS15035 PF00082 Subtilase family S40542_RS15070 PF00892 EamA-like transporter family S40542_RS15080 PF00873 AcrB/AcrD/AcrF family S40542_RS15120 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 S40542_RS15125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS15125 PF02743 Cache domain S40542_RS15125 PF00672 HAMP domain S40542_RS15135 PF04493 Endonuclease V S40542_RS15140 PF12833 Helix-turn-helix domain S40542_RS15155 PF12419 SNF2 Helicase protein S40542_RS15155 PF00271 Helicase conserved C-terminal domain S40542_RS15155 PF00176 SNF2 family N-terminal domain S40542_RS15170 PF01177 Asp/Glu/Hydantoin racemase S40542_RS15190 PF03929 PepSY-associated TM region S40542_RS15220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S40542_RS15225 PF00005 ABC transporter S40542_RS15235 PF12704 MacB-like periplasmic core domain S40542_RS15235 PF02687 FtsX-like permease family S40542_RS15235 PF00005 ABC transporter S40542_RS15240 PF00158 Sigma-54 interaction domain S40542_RS15240 PF00072 Response regulator receiver domain S40542_RS15240 PF02954 Bacterial regulatory protein, Fis family S40542_RS15245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS15245 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS15255 PF05922 Peptidase inhibitor I9 S40542_RS15255 PF00082 Subtilase family S40542_RS15260 PF00400 WD domain, G-beta repeat S40542_RS15260 PF12894 Anaphase-promoting complex subunit 4 WD40 domain S40542_RS15315 PF01066 CDP-alcohol phosphatidyltransferase S40542_RS15320 PF08459 UvrC Helix-hairpin-helix N-terminal S40542_RS15320 PF02151 UvrB/uvrC motif S40542_RS15320 PF01541 GIY-YIG catalytic domain S40542_RS15325 PF00072 Response regulator receiver domain S40542_RS15325 PF00196 Bacterial regulatory proteins, luxR family S40542_RS15340 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS15350 PF04055 Radical SAM superfamily S40542_RS15355 PF06508 Queuosine biosynthesis protein QueC S40542_RS15375 PF00593 TonB dependent receptor S40542_RS15375 PF07715 TonB-dependent Receptor Plug Domain S40542_RS15395 PF12462 DNA helicase IV / RNA helicase N terminal S40542_RS15395 PF00580 UvrD/REP helicase N-terminal domain S40542_RS15395 PF13361 UvrD-like helicase C-terminal domain S40542_RS15400 PF07715 TonB-dependent Receptor Plug Domain S40542_RS15400 PF00593 TonB dependent receptor S40542_RS15410 PF03840 Preprotein translocase SecG subunit S40542_RS15415 PF00121 Triosephosphate isomerase S40542_RS15420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S40542_RS15420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S40542_RS15420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S40542_RS15420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S40542_RS15425 PF00809 Pterin binding enzyme S40542_RS15430 PF01434 Peptidase family M41 S40542_RS15430 PF06480 FtsH Extracellular S40542_RS15430 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS15430 PF17862 AAA+ lid domain S40542_RS15435 PF01728 FtsJ-like methyltransferase S40542_RS15440 PF01985 CRS1 / YhbY (CRM) domain S40542_RS15455 PF00072 Response regulator receiver domain S40542_RS15455 PF00486 Transcriptional regulatory protein, C terminal S40542_RS15460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS15460 PF00672 HAMP domain S40542_RS15460 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS15465 PF00209 Sodium:neurotransmitter symporter family S40542_RS15475 PF13276 HTH-like domain S40542_RS15475 PF00665 Integrase core domain S40542_RS15475 PF13333 Integrase core domain S40542_RS15480 PF13673 Acetyltransferase (GNAT) domain S40542_RS15485 PF07070 SpoOM protein S40542_RS15490 PF00999 Sodium/hydrogen exchanger family S40542_RS15520 PF00486 Transcriptional regulatory protein, C terminal S40542_RS15520 PF00072 Response regulator receiver domain S40542_RS15525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS15525 PF03466 LysR substrate binding domain S40542_RS15530 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain S40542_RS15530 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain S40542_RS15535 PF00672 HAMP domain S40542_RS15535 PF02743 Cache domain S40542_RS15535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS15545 PF04389 Peptidase family M28 S40542_RS15550 PF04355 SmpA / OmlA family S40542_RS15565 PF07670 Nucleoside recognition S40542_RS15570 PF06804 NlpB/DapX lipoprotein S40542_RS15575 PF01842 ACT domain S40542_RS15580 PF00578 AhpC/TSA family S40542_RS15585 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ S40542_RS15590 PF02565 Recombination protein O C terminal S40542_RS15590 PF11967 Recombination protein O N terminal S40542_RS15595 PF07650 KH domain S40542_RS15595 PF01926 50S ribosome-binding GTPase S40542_RS15600 PF14622 Ribonuclease-III-like S40542_RS15600 PF00035 Double-stranded RNA binding motif S40542_RS15605 PF10502 Signal peptidase, peptidase S26 S40542_RS15610 PF00679 Elongation factor G C-terminus S40542_RS15610 PF00009 Elongation factor Tu GTP binding domain S40542_RS15610 PF03144 Elongation factor Tu domain 2 S40542_RS15610 PF06421 GTP-binding protein LepA C-terminus S40542_RS15620 PF17188 MucB/RseB C-terminal domain S40542_RS15620 PF03888 MucB/RseB N-terminal domain S40542_RS15630 PF04542 Sigma-70 region 2 S40542_RS15630 PF08281 Sigma-70, region 4 S40542_RS15635 PF00890 FAD binding domain S40542_RS15635 PF02910 Fumarate reductase flavoprotein C-term S40542_RS15645 PF03937 Flavinator of succinate dehydrogenase S40542_RS15650 PF01571 Aminomethyltransferase folate-binding domain S40542_RS15655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S40542_RS15670 PF04269 Protein of unknown function, DUF440 S40542_RS15680 PF03788 LrgA family S40542_RS15685 PF04172 LrgB-like family S40542_RS15690 PF00924 Mechanosensitive ion channel S40542_RS15690 PF05552 Conserved TM helix S40542_RS15695 PF00704 Glycosyl hydrolases family 18 S40542_RS15695 PF00041 Fibronectin type III domain S40542_RS15700 PF01264 Chorismate synthase S40542_RS15705 PF05175 Methyltransferase small domain S40542_RS15710 PF01713 Smr domain S40542_RS15715 PF00072 Response regulator receiver domain S40542_RS15725 PF10417 C-terminal domain of 1-Cys peroxiredoxin S40542_RS15725 PF00578 AhpC/TSA family S40542_RS15730 PF00392 Bacterial regulatory proteins, gntR family S40542_RS15730 PF07840 FadR C-terminal domain S40542_RS15735 PF02600 Disulfide bond formation protein DsbB S40542_RS15745 PF10531 SLBB domain S40542_RS15750 PF07130 YebG protein S40542_RS15755 PF00155 Aminotransferase class I and II S40542_RS15765 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS15765 PF00072 Response regulator receiver domain S40542_RS15775 PF01253 Translation initiation factor SUI1 S40542_RS15780 PF03707 Bacterial signalling protein N terminal repeat S40542_RS15780 PF00563 EAL domain S40542_RS15780 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS15785 PF00800 Prephenate dehydratase S40542_RS15785 PF01817 Chorismate mutase type II S40542_RS15790 PF01817 Chorismate mutase type II S40542_RS15790 PF02153 Prephenate dehydrogenase S40542_RS15795 PF01245 Ribosomal protein L19 S40542_RS15800 PF01746 tRNA (Guanine-1)-methyltransferase S40542_RS15805 PF01782 RimM N-terminal domain S40542_RS15805 PF05239 PRC-barrel domain S40542_RS15810 PF00886 Ribosomal protein S16 S40542_RS15815 PF00593 TonB dependent receptor S40542_RS15815 PF07715 TonB-dependent Receptor Plug Domain S40542_RS15820 PF01497 Periplasmic binding protein S40542_RS15825 PF01032 FecCD transport family S40542_RS15830 PF00005 ABC transporter S40542_RS15840 PF02881 SRP54-type protein, helical bundle domain S40542_RS15840 PF02978 Signal peptide binding domain S40542_RS15840 PF00448 SRP54-type protein, GTPase domain S40542_RS15845 PF01578 Cytochrome C assembly protein S40542_RS15850 PF01595 Cyclin M transmembrane N-terminal domain S40542_RS15850 PF03471 Transporter associated domain S40542_RS15850 PF00571 CBS domain S40542_RS15860 PF04262 Glutamate-cysteine ligase S40542_RS15865 PF08659 KR domain S40542_RS15865 PF00698 Acyl transferase domain S40542_RS15865 PF14765 Polyketide synthase dehydratase S40542_RS15865 PF08240 Alcohol dehydrogenase GroES-like domain S40542_RS15865 PF00550 Phosphopantetheine attachment site S40542_RS15870 PF07724 AAA domain (Cdc48 subfamily) S40542_RS15870 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS15870 PF17871 AAA lid domain S40542_RS15870 PF10431 C-terminal, D2-small domain, of ClpB protein S40542_RS15870 PF02861 Clp amino terminal domain, pathogenicity island component S40542_RS15875 PF02578 Multi-copper polyphenol oxidoreductase laccase S40542_RS15880 PF00849 RNA pseudouridylate synthase S40542_RS15880 PF01479 S4 domain S40542_RS15885 PF13525 Outer membrane lipoprotein S40542_RS15890 PF00543 Nitrogen regulatory protein P-II S40542_RS15905 PF07963 Prokaryotic N-terminal methylation motif S40542_RS15905 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor S40542_RS15930 PF00072 Response regulator receiver domain S40542_RS15930 PF04397 LytTr DNA-binding domain S40542_RS15935 PF06580 Histidine kinase S40542_RS15935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS15935 PF07694 5TMR of 5TMR-LYT S40542_RS15940 PF02401 LytB protein S40542_RS15945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S40542_RS15950 PF01252 Signal peptidase (SPase) II S40542_RS15955 PF08264 Anticodon-binding domain of tRNA S40542_RS15955 PF06827 Zinc finger found in FPG and IleRS S40542_RS15955 PF00133 tRNA synthetases class I (I, L, M and V) S40542_RS15960 PF01687 Riboflavin kinase S40542_RS15960 PF06574 FAD synthetase S40542_RS15965 PF03023 Lipid II flippase MurJ S40542_RS15970 PF01649 Ribosomal protein S20 S40542_RS15975 PF00072 Response regulator receiver domain S40542_RS15990 PF01713 Smr domain S40542_RS15995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S40542_RS16020 PF00462 Glutaredoxin S40542_RS16025 PF00271 Helicase conserved C-terminal domain S40542_RS16025 PF12343 Cold shock protein DEAD box A S40542_RS16025 PF00270 DEAD/DEAH box helicase S40542_RS16025 PF03880 DbpA RNA binding domain S40542_RS16030 PF06167 Glucose-regulated metallo-peptidase M90 S40542_RS16035 PF00271 Helicase conserved C-terminal domain S40542_RS16035 PF04408 Helicase associated domain (HA2) S40542_RS16035 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold S40542_RS16035 PF11898 Domain of unknown function (DUF3418) S40542_RS16035 PF00270 DEAD/DEAH box helicase S40542_RS16060 PF00593 TonB dependent receptor S40542_RS16060 PF07715 TonB-dependent Receptor Plug Domain S40542_RS16070 PF07715 TonB-dependent Receptor Plug Domain S40542_RS16070 PF00593 TonB dependent receptor S40542_RS16075 PF07715 TonB-dependent Receptor Plug Domain S40542_RS16075 PF00593 TonB dependent receptor S40542_RS16080 PF03104 DNA polymerase family B, exonuclease domain S40542_RS16080 PF00136 DNA polymerase family B S40542_RS16085 PF06733 DEAD_2 S40542_RS16085 PF13307 Helicase C-terminal domain S40542_RS16090 PF01925 Sulfite exporter TauE/SafE S40542_RS16100 PF00850 Histone deacetylase domain S40542_RS16120 PF00873 AcrB/AcrD/AcrF family S40542_RS16135 PF00486 Transcriptional regulatory protein, C terminal S40542_RS16135 PF18500 CadC C-terminal domain 1 S40542_RS16140 PF01593 Flavin containing amine oxidoreductase S40542_RS16140 PF02027 RolB/RolC glucosidase family S40542_RS16145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S40542_RS16145 PF00205 Thiamine pyrophosphate enzyme, central domain S40542_RS16145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S40542_RS16160 PF00072 Response regulator receiver domain S40542_RS16160 PF00486 Transcriptional regulatory protein, C terminal S40542_RS16165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS16165 PF00989 PAS fold S40542_RS16165 PF18698 Histidine kinase sensor domain S40542_RS16165 PF00672 HAMP domain S40542_RS16165 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS16170 PF01554 MatE S40542_RS16175 PF08240 Alcohol dehydrogenase GroES-like domain S40542_RS16175 PF00107 Zinc-binding dehydrogenase S40542_RS16195 PF13302 Acetyltransferase (GNAT) domain S40542_RS16200 PF02146 Sir2 family S40542_RS16235 PF01467 Cytidylyltransferase-like S40542_RS16235 PF00293 NUDIX domain S40542_RS16240 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family S40542_RS16245 PF12833 Helix-turn-helix domain S40542_RS16245 PF06029 AlkA N-terminal domain S40542_RS16245 PF02805 Metal binding domain of Ada S40542_RS16245 PF00730 HhH-GPD superfamily base excision DNA repair protein S40542_RS16250 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain S40542_RS16250 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain S40542_RS16255 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS16255 PF08448 PAS fold S40542_RS16265 PF00497 Bacterial extracellular solute-binding proteins, family 3 S40542_RS16265 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS16265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS16280 PF01336 OB-fold nucleic acid binding domain S40542_RS16280 PF02811 PHP domain S40542_RS16280 PF14579 Helix-hairpin-helix motif S40542_RS16280 PF17657 Bacterial DNA polymerase III alpha subunit finger domain S40542_RS16280 PF07733 Bacterial DNA polymerase III alpha NTPase domain S40542_RS16315 PF04408 Helicase associated domain (HA2) S40542_RS16315 PF00270 DEAD/DEAH box helicase S40542_RS16315 PF00271 Helicase conserved C-terminal domain S40542_RS16315 PF08482 ATP-dependent helicase C-terminal S40542_RS16320 PF00072 Response regulator receiver domain S40542_RS16320 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS16335 PF02687 FtsX-like permease family S40542_RS16335 PF00005 ABC transporter S40542_RS16335 PF12704 MacB-like periplasmic core domain S40542_RS16340 PF00005 ABC transporter S40542_RS16350 PF00005 ABC transporter S40542_RS16350 PF02687 FtsX-like permease family S40542_RS16350 PF12704 MacB-like periplasmic core domain S40542_RS16360 PF02310 B12 binding domain S40542_RS16360 PF02607 B12 binding domain S40542_RS16360 PF02574 Homocysteine S-methyltransferase S40542_RS16360 PF00809 Pterin binding enzyme S40542_RS16360 PF02965 Vitamin B12 dependent methionine synthase, activation domain S40542_RS16365 PF00809 Pterin binding enzyme S40542_RS16365 PF02310 B12 binding domain S40542_RS16365 PF02607 B12 binding domain S40542_RS16365 PF02965 Vitamin B12 dependent methionine synthase, activation domain S40542_RS16365 PF02574 Homocysteine S-methyltransferase S40542_RS16370 PF04204 Homoserine O-succinyltransferase S40542_RS16415 PF17482 Phage tail sheath C-terminal domain S40542_RS16415 PF04984 Phage tail sheath protein subtilisin-like domain S40542_RS16620 PF12848 ABC transporter S40542_RS16620 PF00005 ABC transporter S40542_RS16625 PF07238 PilZ domain S40542_RS16630 PF03994 Domain of Unknown Function (DUF350) S40542_RS16640 PF03738 Glutathionylspermidine synthase preATP-grasp S40542_RS16645 PF01739 CheR methyltransferase, SAM binding domain S40542_RS16645 PF03705 CheR methyltransferase, all-alpha domain S40542_RS16650 PF01584 CheW-like domain S40542_RS16650 PF00072 Response regulator receiver domain S40542_RS16725 PF00303 Thymidylate synthase S40542_RS16730 PF00873 AcrB/AcrD/AcrF family S40542_RS16735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S40542_RS16745 PF01790 Prolipoprotein diacylglyceryl transferase S40542_RS16750 PF01590 GAF domain S40542_RS16750 PF05524 PEP-utilising enzyme, N-terminal S40542_RS16750 PF00391 PEP-utilising enzyme, mobile domain S40542_RS16750 PF02896 PEP-utilising enzyme, TIM barrel domain S40542_RS16755 PF00293 NUDIX domain S40542_RS16760 PF02976 DNA mismatch repair enzyme MutH S40542_RS16770 PF03952 Enolase, N-terminal domain S40542_RS16770 PF00113 Enolase, C-terminal TIM barrel domain S40542_RS16775 PF06418 CTP synthase N-terminus S40542_RS16775 PF00117 Glutamine amidotransferase class-I S40542_RS16780 PF03819 MazG nucleotide pyrophosphohydrolase domain S40542_RS16785 PF04607 Region found in RelA / SpoT proteins S40542_RS16785 PF13291 ACT domain S40542_RS16785 PF02824 TGS domain S40542_RS16790 PF01938 TRAM domain S40542_RS16790 PF05958 tRNA (Uracil-5-)-methyltransferase S40542_RS16795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS16795 PF00072 Response regulator receiver domain S40542_RS16795 PF01627 Hpt domain S40542_RS16795 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS16795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS16795 PF00672 HAMP domain S40542_RS16800 PF01329 Pterin 4 alpha carbinolamine dehydratase S40542_RS16805 PF00351 Biopterin-dependent aromatic amino acid hydroxylase S40542_RS16810 PF01053 Cys/Met metabolism PLP-dependent enzyme S40542_RS16815 PF05128 Domain of unknown function (DUF697) S40542_RS16820 PF04317 YcjX-like family, DUF463 S40542_RS16825 PF04024 PspC domain S40542_RS16835 PF04012 PspA/IM30 family S40542_RS16840 PF02954 Bacterial regulatory protein, Fis family S40542_RS16840 PF00158 Sigma-54 interaction domain S40542_RS16845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S40542_RS16850 PF00528 Binding-protein-dependent transport system inner membrane component S40542_RS16855 PF12911 N-terminal TM domain of oligopeptide transport permease C S40542_RS16855 PF00528 Binding-protein-dependent transport system inner membrane component S40542_RS16860 PF00005 ABC transporter S40542_RS16860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S40542_RS16865 PF00005 ABC transporter S40542_RS16870 PF13145 PPIC-type PPIASE domain S40542_RS16875 PF00216 Bacterial DNA-binding protein S40542_RS16880 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS16880 PF05362 Lon protease (S16) C-terminal proteolytic domain S40542_RS16880 PF02190 ATP-dependent protease La (LON) substrate-binding domain S40542_RS16885 PF10431 C-terminal, D2-small domain, of ClpB protein S40542_RS16885 PF07724 AAA domain (Cdc48 subfamily) S40542_RS16885 PF06689 ClpX C4-type zinc finger S40542_RS16890 PF00574 Clp protease S40542_RS16895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S40542_RS16895 PF05698 Bacterial trigger factor protein (TF) C-terminus S40542_RS16895 PF05697 Bacterial trigger factor protein (TF) S40542_RS16925 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain S40542_RS16925 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain S40542_RS16940 PF01042 Endoribonuclease L-PSP S40542_RS16945 PF01406 tRNA synthetases class I (C) catalytic domain S40542_RS16945 PF09190 DALR domain S40542_RS16950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD S40542_RS16955 PF00149 Calcineurin-like phosphoesterase S40542_RS16960 PF00535 Glycosyl transferase family 2 S40542_RS16970 PF02397 Bacterial sugar transferase S40542_RS16975 PF03808 Glycosyl transferase WecB/TagA/CpsF family S40542_RS16995 PF00158 Sigma-54 interaction domain S40542_RS16995 PF02954 Bacterial regulatory protein, Fis family S40542_RS16995 PF00072 Response regulator receiver domain S40542_RS17005 PF00535 Glycosyl transferase family 2 S40542_RS17025 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) S40542_RS17035 PF00156 Phosphoribosyl transferase domain S40542_RS17040 PF02674 Colicin V production protein S40542_RS17050 PF02875 Mur ligase family, glutamate ligase domain S40542_RS17050 PF08245 Mur ligase middle domain S40542_RS17055 PF17848 Acetyl-coA carboxylase zinc finger domain S40542_RS17055 PF01039 Carboxyl transferase domain S40542_RS17060 PF01416 tRNA pseudouridine synthase S40542_RS17070 PF01118 Semialdehyde dehydrogenase, NAD binding domain S40542_RS17070 PF02774 Semialdehyde dehydrogenase, dimerisation domain S40542_RS17075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S40542_RS17075 PF11890 Domain of unknown function (DUF3410) S40542_RS17075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S40542_RS17085 PF02770 Acyl-CoA dehydrogenase, middle domain S40542_RS17085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain S40542_RS17085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain S40542_RS17085 PF09317 Domain of unknown function (DUF1974) S40542_RS17095 PF00005 ABC transporter S40542_RS17165 PF00929 Exonuclease S40542_RS17170 PF00075 RNase H S40542_RS17175 PF08241 Methyltransferase domain S40542_RS17180 PF16123 Hydroxyacylglutathione hydrolase C-terminus S40542_RS17180 PF00753 Metallo-beta-lactamase superfamily S40542_RS17185 PF01464 Transglycosylase SLT domain S40542_RS17185 PF01476 LysM domain S40542_RS17190 PF00258 Flavodoxin S40542_RS17195 PF00849 RNA pseudouridylate synthase S40542_RS17200 PF04287 tRNA pseudouridine synthase C S40542_RS17230 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) S40542_RS17235 PF07348 Syd protein (SUKH-2) S40542_RS17240 PF14489 QueF-like protein S40542_RS17240 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term S40542_RS17245 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD S40542_RS17255 PF04357 TamB, inner membrane protein subunit of TAM complex S40542_RS17260 PF17243 POTRA domain TamA domain 1 S40542_RS17260 PF07244 Surface antigen variable number repeat S40542_RS17260 PF01103 Surface antigen S40542_RS17270 PF00271 Helicase conserved C-terminal domain S40542_RS17270 PF04851 Type III restriction enzyme, res subunit S40542_RS17280 PF01979 Amidohydrolase family S40542_RS17285 PF03707 Bacterial signalling protein N terminal repeat S40542_RS17285 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS17285 PF00563 EAL domain S40542_RS17290 PF08267 Cobalamin-independent synthase, N-terminal domain S40542_RS17290 PF01717 Cobalamin-independent synthase, Catalytic domain S40542_RS17295 PF03466 LysR substrate binding domain S40542_RS17295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS17315 PF14497 Glutathione S-transferase, C-terminal domain S40542_RS17315 PF02798 Glutathione S-transferase, N-terminal domain S40542_RS17320 PF03466 LysR substrate binding domain S40542_RS17320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS17330 PF00672 HAMP domain S40542_RS17330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS17330 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS17335 PF04851 Type III restriction enzyme, res subunit S40542_RS17335 PF00271 Helicase conserved C-terminal domain S40542_RS17335 PF02151 UvrB/uvrC motif S40542_RS17335 PF17757 UvrB interaction domain S40542_RS17335 PF12344 Ultra-violet resistance protein B S40542_RS17340 PF01554 MatE S40542_RS17365 PF00563 EAL domain S40542_RS17365 PF00196 Bacterial regulatory proteins, luxR family S40542_RS17370 PF02508 Rnf-Nqr subunit, membrane protein S40542_RS17375 PF04060 Putative Fe-S cluster S40542_RS17380 PF10531 SLBB domain S40542_RS17380 PF13375 RnfC Barrel sandwich hybrid domain S40542_RS17380 PF12838 4Fe-4S dicluster domain S40542_RS17380 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit S40542_RS17385 PF03116 NQR2, RnfD, RnfE family S40542_RS17390 PF04205 FMN-binding domain S40542_RS17395 PF02508 Rnf-Nqr subunit, membrane protein S40542_RS17400 PF00633 Helix-hairpin-helix motif S40542_RS17400 PF00730 HhH-GPD superfamily base excision DNA repair protein S40542_RS17400 PF10576 Iron-sulfur binding domain of endonuclease III S40542_RS17430 PF00672 HAMP domain S40542_RS17430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS17430 PF17200 Single Cache domain 2 S40542_RS17515 PF00486 Transcriptional regulatory protein, C terminal S40542_RS17515 PF00072 Response regulator receiver domain S40542_RS17520 PF01641 SelR domain S40542_RS17530 PF03120 NAD-dependent DNA ligase OB-fold domain S40542_RS17530 PF01653 NAD-dependent DNA ligase adenylation domain S40542_RS17530 PF00533 BRCA1 C Terminus (BRCT) domain S40542_RS17530 PF12826 Helix-hairpin-helix motif S40542_RS17530 PF03119 NAD-dependent DNA ligase C4 zinc finger domain S40542_RS17535 PF04354 ZipA, C-terminal FtsZ-binding domain S40542_RS17535 PF04354 ZipA, C-terminal FtsZ-binding domain S40542_RS17540 PF06470 SMC proteins Flexible Hinge Domain S40542_RS17540 PF02463 RecF/RecN/SMC N terminal domain S40542_RS17545 PF08032 RNA 2'-O ribose methyltransferase substrate binding S40542_RS17545 PF00588 SpoU rRNA Methylase family S40542_RS17580 PF01565 FAD binding domain S40542_RS17580 PF08031 Berberine and berberine like S40542_RS17625 PF18125 RlmM ferredoxin-like domain S40542_RS17625 PF01728 FtsJ-like methyltransferase S40542_RS17630 PF04241 Protein of unknown function (DUF423) S40542_RS17640 PF03466 LysR substrate binding domain S40542_RS17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS17645 PF00793 DAHP synthetase I family S40542_RS17650 PF13369 Transglutaminase-like superfamily S40542_RS17660 PF11849 Domain of unknown function (DUF3369) S40542_RS17665 PF17827 PrmC N-terminal domain S40542_RS17665 PF13847 Methyltransferase domain S40542_RS17670 PF03462 PCRF domain S40542_RS17670 PF00472 RF-1 domain S40542_RS17675 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain S40542_RS17675 PF01488 Shikimate / quinate 5-dehydrogenase S40542_RS17675 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain S40542_RS17680 PF03550 Outer membrane lipoprotein LolB S40542_RS17685 PF00288 GHMP kinases N terminal domain S40542_RS17685 PF08544 GHMP kinases C terminal S40542_RS17690 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase S40542_RS17690 PF14572 Phosphoribosyl synthetase-associated domain S40542_RS17695 PF01386 Ribosomal L25p family S40542_RS17695 PF14693 Ribosomal protein TL5, C-terminal domain S40542_RS17700 PF01195 Peptidyl-tRNA hydrolase S40542_RS17705 PF06071 Protein of unknown function (DUF933) S40542_RS17705 PF01926 50S ribosome-binding GTPase S40542_RS17775 PF01494 FAD binding domain S40542_RS17780 PF04055 Radical SAM superfamily S40542_RS17780 PF01938 TRAM domain S40542_RS17780 PF00919 Uncharacterized protein family UPF0004 S40542_RS17785 PF02562 PhoH-like protein S40542_RS17790 PF02130 Uncharacterized protein family UPF0054 S40542_RS17795 PF03471 Transporter associated domain S40542_RS17795 PF00571 CBS domain S40542_RS17800 PF00795 Carbon-nitrogen hydrolase S40542_RS17825 PF14685 Tricorn protease PDZ domain S40542_RS17825 PF07676 WD40-like Beta Propeller Repeat S40542_RS17825 PF03572 Peptidase family S41 S40542_RS17825 PF14684 Tricorn protease C1 domain S40542_RS17830 PF01266 FAD dependent oxidoreductase S40542_RS17835 PF04324 BFD-like [2Fe-2S] binding domain S40542_RS17835 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS17845 PF01037 Lrp/AsnC ligand binding domain S40542_RS17850 PF01619 Proline dehydrogenase S40542_RS17850 PF00171 Aldehyde dehydrogenase family S40542_RS17850 PF14850 DNA-binding domain of Proline dehydrogenase S40542_RS17850 PF18327 Proline utilization A proline dehydrogenase N-terminal domain S40542_RS17855 PF03222 Tryptophan/tyrosine permease family S40542_RS17870 PF13677 Membrane MotB of proton-channel complex MotA/MotB S40542_RS17870 PF00691 OmpA family S40542_RS17875 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS17880 PF02609 Exonuclease VII small subunit S40542_RS17885 PF00348 Polyprenyl synthetase S40542_RS17890 PF13292 1-deoxy-D-xylulose-5-phosphate synthase S40542_RS17890 PF02779 Transketolase, pyrimidine binding domain S40542_RS17890 PF02780 Transketolase, C-terminal domain S40542_RS17905 PF00989 PAS fold S40542_RS17915 PF00486 Transcriptional regulatory protein, C terminal S40542_RS17915 PF00072 Response regulator receiver domain S40542_RS17920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS17920 PF16527 Two-component sensor protein CpxA, periplasmic domain S40542_RS17920 PF00672 HAMP domain S40542_RS17920 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS17930 PF16916 Dimerisation domain of Zinc Transporter S40542_RS17930 PF01545 Cation efflux family S40542_RS17935 PF00588 SpoU rRNA Methylase family S40542_RS17940 PF00154 recA bacterial DNA recombination protein S40542_RS17945 PF02464 Competence-damaged protein S40542_RS17950 PF05188 MutS domain II S40542_RS17950 PF01624 MutS domain I S40542_RS17950 PF00488 MutS domain V S40542_RS17950 PF05192 MutS domain III S40542_RS17950 PF05190 MutS family domain IV S40542_RS17955 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) S40542_RS17965 PF01966 HD domain S40542_RS17970 PF06877 Regulator of ribonuclease activity B S40542_RS17975 PF01553 Acyltransferase S40542_RS17980 PF00140 Sigma-70 factor, region 1.2 S40542_RS17980 PF04545 Sigma-70, region 4 S40542_RS17980 PF04542 Sigma-70 region 2 S40542_RS17985 PF18075 FtsX extracellular domain S40542_RS17990 PF00005 ABC transporter S40542_RS17995 PF00448 SRP54-type protein, GTPase domain S40542_RS17995 PF02881 SRP54-type protein, helical bundle domain S40542_RS18005 PF01165 Ribosomal protein S21 S40542_RS18010 PF09424 Yqey-like protein S40542_RS18015 PF10410 DnaB-helicase binding domain of primase S40542_RS18015 PF01807 CHC2 zinc finger S40542_RS18015 PF08275 DNA primase catalytic core, N-terminal domain S40542_RS18015 PF08278 DNA primase DnaG DnaB-binding S40542_RS18020 PF00140 Sigma-70 factor, region 1.2 S40542_RS18020 PF04546 Sigma-70, non-essential region S40542_RS18020 PF03979 Sigma-70 factor, region 1.1 S40542_RS18020 PF04539 Sigma-70 region 3 S40542_RS18020 PF04542 Sigma-70 region 2 S40542_RS18020 PF04545 Sigma-70, region 4 S40542_RS18030 PF01207 Dihydrouridine synthase (Dus) S40542_RS18035 PF02954 Bacterial regulatory protein, Fis family S40542_RS18040 PF01808 AICARFT/IMPCHase bienzyme S40542_RS18040 PF02142 MGS-like domain S40542_RS18050 PF02843 Phosphoribosylglycinamide synthetase, C domain S40542_RS18050 PF02844 Phosphoribosylglycinamide synthetase, N domain S40542_RS18050 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain S40542_RS18060 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS18060 PF00563 EAL domain S40542_RS18060 PF03707 Bacterial signalling protein N terminal repeat S40542_RS18070 PF00850 Histone deacetylase domain S40542_RS18075 PF00144 Beta-lactamase S40542_RS18085 PF01810 LysE type translocator S40542_RS18100 PF00849 RNA pseudouridylate synthase S40542_RS18100 PF01479 S4 domain S40542_RS18105 PF17200 Single Cache domain 2 S40542_RS18105 PF00672 HAMP domain S40542_RS18105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS18125 PF00563 EAL domain S40542_RS18125 PF17154 Gammaproteobacterial periplasmic sensor domain S40542_RS18125 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS18125 PF00672 HAMP domain S40542_RS18140 PF07549 SecD/SecF GG Motif S40542_RS18140 PF02355 Protein export membrane protein S40542_RS18145 PF07549 SecD/SecF GG Motif S40542_RS18145 PF13721 SecD export protein N-terminal TM region S40542_RS18145 PF02355 Protein export membrane protein S40542_RS18150 PF02699 Preprotein translocase subunit S40542_RS18155 PF01702 Queuine tRNA-ribosyltransferase S40542_RS18160 PF02547 Queuosine biosynthesis protein S40542_RS18165 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS18165 PF00563 EAL domain S40542_RS18165 PF08448 PAS fold S40542_RS18170 PF03466 LysR substrate binding domain S40542_RS18170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS18175 PF01384 Phosphate transporter family S40542_RS18180 PF01865 Protein of unknown function DUF47 S40542_RS18185 PF01895 PhoU domain S40542_RS18190 PF00005 ABC transporter S40542_RS18195 PF00528 Binding-protein-dependent transport system inner membrane component S40542_RS18200 PF00528 Binding-protein-dependent transport system inner membrane component S40542_RS18210 PF17941 Polyphosphate kinase C-terminal domain 1 S40542_RS18210 PF13089 Polyphosphate kinase N-terminal domain S40542_RS18210 PF02503 Polyphosphate kinase middle domain S40542_RS18210 PF13090 Polyphosphate kinase C-terminal domain 2 S40542_RS18215 PF02541 Ppx/GppA phosphatase family S40542_RS18220 PF00563 EAL domain S40542_RS18220 PF08668 HDOD domain S40542_RS18225 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ S40542_RS18235 PF05164 Cell division protein ZapA S40542_RS18245 PF01476 LysM domain S40542_RS18245 PF01464 Transglycosylase SLT domain S40542_RS18250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S40542_RS18255 PF00106 short chain dehydrogenase S40542_RS18295 PF00873 AcrB/AcrD/AcrF family S40542_RS18300 PF01625 Peptide methionine sulfoxide reductase S40542_RS18305 PF00593 TonB dependent receptor S40542_RS18305 PF07715 TonB-dependent Receptor Plug Domain S40542_RS18310 PF04461 Protein of unknown function (DUF520) S40542_RS18320 PF08546 Ketopantoate reductase PanE/ApbA C terminal S40542_RS18320 PF02558 Ketopantoate reductase PanE/ApbA S40542_RS18325 PF02926 THUMP domain S40542_RS18325 PF02568 Thiamine biosynthesis protein (ThiI) S40542_RS18330 PF00440 Bacterial regulatory proteins, tetR family S40542_RS18330 PF08360 QacR-like protein, C-terminal region S40542_RS18335 PF01467 Cytidylyltransferase-like S40542_RS18350 PF00583 Acetyltransferase (GNAT) family S40542_RS18350 PF00206 Lyase S40542_RS18350 PF14698 Argininosuccinate lyase C-terminal S40542_RS18355 PF00764 Arginosuccinate synthase S40542_RS18360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain S40542_RS18360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain S40542_RS18365 PF00696 Amino acid kinase family S40542_RS18370 PF01118 Semialdehyde dehydrogenase, NAD binding domain S40542_RS18370 PF02774 Semialdehyde dehydrogenase, dimerisation domain S40542_RS18375 PF07687 Peptidase dimerisation domain S40542_RS18375 PF01546 Peptidase family M20/M25/M40 S40542_RS18390 PF00465 Iron-containing alcohol dehydrogenase S40542_RS18395 PF03466 LysR substrate binding domain S40542_RS18395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS18400 PF00255 Glutathione peroxidase S40542_RS18405 PF01047 MarR family S40542_RS18410 PF00749 tRNA synthetases class I (E and Q), catalytic domain S40542_RS18420 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS18425 PF01472 PUA domain S40542_RS18425 PF00696 Amino acid kinase family S40542_RS18435 PF07969 Amidohydrolase family S40542_RS18460 PF02719 Polysaccharide biosynthesis protein S40542_RS18465 PF02397 Bacterial sugar transferase S40542_RS18470 PF01370 NAD dependent epimerase/dehydratase family S40542_RS18480 PF04321 RmlD substrate binding domain S40542_RS18485 PF16363 GDP-mannose 4,6 dehydratase S40542_RS18490 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase S40542_RS18495 PF00483 Nucleotidyl transferase S40542_RS18510 PF01380 SIS domain S40542_RS18525 PF00551 Formyl transferase S40542_RS18525 PF02911 Formyl transferase, C-terminal domain S40542_RS18535 PF01370 NAD dependent epimerase/dehydratase family S40542_RS18535 PF02911 Formyl transferase, C-terminal domain S40542_RS18535 PF00551 Formyl transferase S40542_RS18540 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family S40542_RS18545 PF16363 GDP-mannose 4,6 dehydratase S40542_RS18550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S40542_RS18550 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S40542_RS18555 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS18560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family S40542_RS18565 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS18570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S40542_RS18570 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S40542_RS18575 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain S40542_RS18575 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain S40542_RS18575 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain S40542_RS18580 PF02706 Chain length determinant protein S40542_RS18580 PF13807 G-rich domain on putative tyrosine kinase S40542_RS18580 PF13614 AAA domain S40542_RS18585 PF01451 Low molecular weight phosphotyrosine protein phosphatase S40542_RS18590 PF18412 Outer-membrane lipoprotein Wza C-terminal domain S40542_RS18590 PF10531 SLBB domain S40542_RS18590 PF02563 Polysaccharide biosynthesis/export protein S40542_RS18595 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain S40542_RS18595 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain S40542_RS18595 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain S40542_RS18600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S40542_RS18600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S40542_RS18600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S40542_RS18600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S40542_RS18605 PF00483 Nucleotidyl transferase S40542_RS18605 PF01050 Mannose-6-phosphate isomerase S40542_RS18610 PF00535 Glycosyl transferase family 2 S40542_RS18625 PF13439 Glycosyltransferase Family 4 S40542_RS18625 PF00534 Glycosyl transferases group 1 S40542_RS18635 PF00535 Glycosyl transferase family 2 S40542_RS18640 PF00534 Glycosyl transferases group 1 S40542_RS18640 PF13439 Glycosyltransferase Family 4 S40542_RS18645 PF02350 UDP-N-acetylglucosamine 2-epimerase S40542_RS18650 PF00953 Glycosyl transferase family 4 S40542_RS18670 PF05552 Conserved TM helix S40542_RS18670 PF00924 Mechanosensitive ion channel S40542_RS18680 PF07690 Major Facilitator Superfamily S40542_RS18685 PF03173 Putative carbohydrate binding domain S40542_RS18685 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain S40542_RS18685 PF02838 Glycosyl hydrolase family 20, domain 2 S40542_RS18685 PF00728 Glycosyl hydrolase family 20, catalytic domain S40542_RS18690 PF05649 Peptidase family M13 S40542_RS18690 PF01431 Peptidase family M13 S40542_RS18695 PF00293 NUDIX domain S40542_RS18700 PF02810 SEC-C motif S40542_RS18700 PF07517 SecA DEAD-like domain S40542_RS18700 PF01043 SecA preprotein cross-linking domain S40542_RS18700 PF07516 SecA Wing and Scaffold domain S40542_RS18710 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase S40542_RS18715 PF12327 FtsZ family, C-terminal domain S40542_RS18715 PF00091 Tubulin/FtsZ family, GTPase domain S40542_RS18720 PF02491 SHS2 domain inserted in FTSA S40542_RS18725 PF03799 Cell division protein FtsQ S40542_RS18725 PF08478 POTRA domain, FtsQ-type S40542_RS18730 PF07478 D-ala D-ala ligase C-terminus S40542_RS18730 PF01820 D-ala D-ala ligase N-terminus S40542_RS18735 PF01225 Mur ligase family, catalytic domain S40542_RS18735 PF08245 Mur ligase middle domain S40542_RS18735 PF02875 Mur ligase family, glutamate ligase domain S40542_RS18740 PF03033 Glycosyltransferase family 28 N-terminal domain S40542_RS18740 PF04101 Glycosyltransferase family 28 C-terminal domain S40542_RS18745 PF01098 Cell cycle protein S40542_RS18750 PF08245 Mur ligase middle domain S40542_RS18750 PF02875 Mur ligase family, glutamate ligase domain S40542_RS18755 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 S40542_RS18755 PF00953 Glycosyl transferase family 4 S40542_RS18760 PF08245 Mur ligase middle domain S40542_RS18760 PF02875 Mur ligase family, glutamate ligase domain S40542_RS18760 PF01225 Mur ligase family, catalytic domain S40542_RS18765 PF08245 Mur ligase middle domain S40542_RS18765 PF02875 Mur ligase family, glutamate ligase domain S40542_RS18765 PF01225 Mur ligase family, catalytic domain S40542_RS18770 PF03717 Penicillin-binding Protein dimerisation domain S40542_RS18770 PF00905 Penicillin binding protein transpeptidase domain S40542_RS18775 PF04999 Cell division protein FtsL S40542_RS18780 PF01795 MraW methylase family S40542_RS18785 PF02381 MraZ protein, putative antitoxin-like S40542_RS18790 PF00563 EAL domain S40542_RS18790 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS18790 PF03707 Bacterial signalling protein N terminal repeat S40542_RS18795 PF00245 Alkaline phosphatase S40542_RS18805 PF03472 Autoinducer binding domain S40542_RS18805 PF00196 Bacterial regulatory proteins, luxR family S40542_RS18810 PF00579 tRNA synthetases class I (W and Y) S40542_RS18815 PF00155 Aminotransferase class I and II S40542_RS18825 PF01209 ubiE/COQ5 methyltransferase family S40542_RS18835 PF14535 AMP-binding enzyme C-terminal domain S40542_RS18835 PF00501 AMP-binding enzyme S40542_RS18845 PF13649 Methyltransferase domain S40542_RS18860 PF00765 Autoinducer synthase S40542_RS18875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S40542_RS18880 PF04348 LppC putative lipoprotein S40542_RS18885 PF02021 Uncharacterised protein family UPF0102 S40542_RS18890 PF13580 SIS domain S40542_RS18895 PF04972 BON domain S40542_RS18900 PF04386 Stringent starvation protein B S40542_RS18905 PF00043 Glutathione S-transferase, C-terminal domain S40542_RS18905 PF02798 Glutathione S-transferase, N-terminal domain S40542_RS18910 PF02167 Cytochrome C1 family S40542_RS18915 PF00032 Cytochrome b(C-terminal)/b6/petD S40542_RS18915 PF00033 Cytochrome b/b6/petB S40542_RS18920 PF00355 Rieske [2Fe-2S] domain S40542_RS18920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal S40542_RS18935 PF00380 Ribosomal protein S9/S16 S40542_RS18940 PF00572 Ribosomal protein L13 S40542_RS18945 PF03969 AFG1-like ATPase S40542_RS18955 PF00595 PDZ domain S40542_RS18960 PF13180 PDZ domain S40542_RS18965 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) S40542_RS18970 PF01722 BolA-like protein S40542_RS18975 PF13466 STAS domain S40542_RS18980 PF05494 MlaC protein S40542_RS18985 PF02470 MlaD protein S40542_RS18990 PF02405 Permease MlaE S40542_RS18995 PF00005 ABC transporter S40542_RS19000 PF01699 Sodium/calcium exchanger protein S40542_RS19005 PF01380 SIS domain S40542_RS19005 PF00571 CBS domain S40542_RS19025 PF12399 Branched-chain amino acid ATP-binding cassette transporter S40542_RS19025 PF00005 ABC transporter S40542_RS19030 PF00309 Sigma-54 factor, Activator interacting domain (AID) S40542_RS19030 PF04963 Sigma-54 factor, core binding domain S40542_RS19030 PF04552 Sigma-54, DNA binding domain S40542_RS19035 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein S40542_RS19040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 S40542_RS19045 PF03668 P-loop ATPase protein family S40542_RS19050 PF00381 PTS HPr component phosphorylation site S40542_RS19055 PF00571 CBS domain S40542_RS19055 PF01769 Divalent cation transporter S40542_RS19055 PF03448 MgtE intracellular N domain S40542_RS19060 PF01523 Putative modulator of DNA gyrase S40542_RS19065 PF04751 Protein of unknown function (DUF615) S40542_RS19070 PF01523 Putative modulator of DNA gyrase S40542_RS19075 PF00795 Carbon-nitrogen hydrolase S40542_RS19080 PF13116 Protein of unknown function S40542_RS19080 PF13502 AsmA-like C-terminal region S40542_RS19085 PF00575 S1 RNA binding domain S40542_RS19085 PF10150 Ribonuclease E/G family S40542_RS19090 PF02545 Maf-like protein S40542_RS19095 PF04093 rod shape-determining protein MreD S40542_RS19100 PF04085 rod shape-determining protein MreC S40542_RS19115 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS19125 PF00436 Single-strand binding protein family S40542_RS19130 PF07690 Major Facilitator Superfamily S40542_RS19140 PF17760 UvrA interaction domain S40542_RS19140 PF17755 UvrA DNA-binding domain S40542_RS19140 PF00005 ABC transporter S40542_RS19180 PF02667 Short chain fatty acid transporter S40542_RS19190 PF00563 EAL domain S40542_RS19190 PF01590 GAF domain S40542_RS19190 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS19190 PF00360 Phytochrome region S40542_RS19195 PF01595 Cyclin M transmembrane N-terminal domain S40542_RS19195 PF00571 CBS domain S40542_RS19205 PF00486 Transcriptional regulatory protein, C terminal S40542_RS19205 PF00072 Response regulator receiver domain S40542_RS19210 PF13335 Magnesium chelatase, subunit ChlI C-terminal S40542_RS19210 PF01078 Magnesium chelatase, subunit ChlI S40542_RS19215 PF03458 UPF0126 domain S40542_RS19220 PF00246 Zinc carboxypeptidase S40542_RS19230 PF18030 RimK PreATP-grasp domain S40542_RS19230 PF08443 RimK-like ATP-grasp domain S40542_RS19240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain S40542_RS19240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain S40542_RS19240 PF06827 Zinc finger found in FPG and IleRS S40542_RS19250 PF02833 DHHA2 domain S40542_RS19250 PF01368 DHH family S40542_RS19255 PF00471 Ribosomal protein L33 S40542_RS19260 PF00830 Ribosomal L28 family S40542_RS19265 PF04002 RadC-like JAB domain S40542_RS19270 PF04127 DNA / pantothenate metabolism flavoprotein S40542_RS19270 PF02441 Flavoprotein S40542_RS19275 PF00440 Bacterial regulatory proteins, tetR family S40542_RS19285 PF11842 Domain of unknown function (DUF3362) S40542_RS19285 PF08497 Radical SAM N-terminal S40542_RS19285 PF04055 Radical SAM superfamily S40542_RS19290 PF00563 EAL domain S40542_RS19290 PF03707 Bacterial signalling protein N terminal repeat S40542_RS19290 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS19330 PF04012 PspA/IM30 family S40542_RS19335 PF01207 Dihydrouridine synthase (Dus) S40542_RS19345 PF01370 NAD dependent epimerase/dehydratase family S40542_RS19355 PF00485 Phosphoribulokinase / Uridine kinase family S40542_RS19360 PF01931 Protein of unknown function DUF84 S40542_RS19365 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS19370 PF08032 RNA 2'-O ribose methyltransferase substrate binding S40542_RS19370 PF00588 SpoU rRNA Methylase family S40542_RS19375 PF17876 Cold shock domain S40542_RS19375 PF00773 RNB domain S40542_RS19375 PF08206 Ribonuclease B OB domain S40542_RS19375 PF00575 S1 RNA binding domain S40542_RS19375 PF08461 Ribonuclease R winged-helix domain S40542_RS19380 PF04972 BON domain S40542_RS19380 PF00691 OmpA family S40542_RS19385 PF17210 SdrD B-like domain S40542_RS19385 PF17961 Bacterial Ig domain S40542_RS19385 PF10425 C-terminus of bacterial fibrinogen-binding adhesin S40542_RS19385 PF00746 LPXTG cell wall anchor motif S40542_RS19385 PF04650 YSIRK type signal peptide S40542_RS19390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS19390 PF00072 Response regulator receiver domain S40542_RS19390 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS19390 PF01627 Hpt domain S40542_RS19390 PF17149 Periplasmic sensor domain found in signal transduction proteins S40542_RS19390 PF00672 HAMP domain S40542_RS19395 PF00196 Bacterial regulatory proteins, luxR family S40542_RS19395 PF00072 Response regulator receiver domain S40542_RS19400 PF07730 Histidine kinase S40542_RS19410 PF03009 Glycerophosphoryl diester phosphodiesterase family S40542_RS19415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS19415 PF00672 HAMP domain S40542_RS19415 PF02743 Cache domain S40542_RS19420 PF00152 tRNA synthetases class II (D, K and N) S40542_RS19425 PF08207 Elongation factor P (EF-P) KOW-like domain S40542_RS19425 PF09285 Elongation factor P, C-terminal S40542_RS19425 PF01132 Elongation factor P (EF-P) OB domain S40542_RS19430 PF04055 Radical SAM superfamily S40542_RS19450 PF00873 AcrB/AcrD/AcrF family S40542_RS19465 PF00717 Peptidase S24-like S40542_RS19465 PF01726 LexA DNA binding domain S40542_RS19470 PF02371 Transposase IS116/IS110/IS902 family S40542_RS19470 PF01548 Transposase S40542_RS19510 PF03143 Elongation factor Tu C-terminal domain S40542_RS19510 PF03144 Elongation factor Tu domain 2 S40542_RS19510 PF00009 Elongation factor Tu GTP binding domain S40542_RS19515 PF03764 Elongation factor G, domain IV S40542_RS19515 PF00009 Elongation factor Tu GTP binding domain S40542_RS19515 PF14492 Elongation Factor G, domain II S40542_RS19515 PF03144 Elongation factor Tu domain 2 S40542_RS19515 PF00679 Elongation factor G C-terminus S40542_RS19520 PF00177 Ribosomal protein S7p/S5e S40542_RS19525 PF00164 Ribosomal protein S12/S23 S40542_RS19530 PF04998 RNA polymerase Rpb1, domain 5 S40542_RS19530 PF05000 RNA polymerase Rpb1, domain 4 S40542_RS19530 PF04997 RNA polymerase Rpb1, domain 1 S40542_RS19530 PF00623 RNA polymerase Rpb1, domain 2 S40542_RS19530 PF04983 RNA polymerase Rpb1, domain 3 S40542_RS19535 PF04563 RNA polymerase beta subunit S40542_RS19535 PF00562 RNA polymerase Rpb2, domain 6 S40542_RS19535 PF10385 RNA polymerase beta subunit external 1 domain S40542_RS19535 PF04565 RNA polymerase Rpb2, domain 3 S40542_RS19535 PF04561 RNA polymerase Rpb2, domain 2 S40542_RS19535 PF04560 RNA polymerase Rpb2, domain 7 S40542_RS19540 PF16320 Ribosomal protein L7/L12 dimerisation domain S40542_RS19540 PF00542 Ribosomal protein L7/L12 C-terminal domain S40542_RS19545 PF00466 Ribosomal protein L10 S40542_RS19550 PF00687 Ribosomal protein L1p/L10e family S40542_RS19555 PF03946 Ribosomal protein L11, N-terminal domain S40542_RS19555 PF00298 Ribosomal protein L11, RNA binding domain S40542_RS19560 PF00467 KOW motif S40542_RS19560 PF02357 Transcription termination factor nusG S40542_RS19565 PF00584 SecE/Sec61-gamma subunits of protein translocation complex S40542_RS19575 PF01791 DeoC/LacD family aldolase S40542_RS19580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S40542_RS19580 PF10414 Sirohaem synthase dimerisation region S40542_RS19580 PF14824 Sirohaem biosynthesis protein central S40542_RS19585 PF01507 Phosphoadenosine phosphosulfate reductase family S40542_RS19590 PF00009 Elongation factor Tu GTP binding domain S40542_RS19595 PF03600 Citrate transporter S40542_RS19595 PF02080 TrkA-C domain S40542_RS19605 PF00459 Inositol monophosphatase family S40542_RS19610 PF02253 Phospholipase A1 S40542_RS19615 PF00583 Acetyltransferase (GNAT) family S40542_RS19615 PF09500 Putative thioesterase (yiiD_Cterm) S40542_RS19625 PF02580 D-Tyr-tRNA(Tyr) deacylase S40542_RS19630 PF00561 alpha/beta hydrolase fold S40542_RS19635 PF03631 Virulence factor BrkB S40542_RS19650 PF00563 EAL domain S40542_RS19650 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS19650 PF03707 Bacterial signalling protein N terminal repeat S40542_RS19670 PF03061 Thioesterase superfamily S40542_RS19685 PF01507 Phosphoadenosine phosphosulfate reductase family S40542_RS19690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain S40542_RS19690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain S40542_RS19695 PF00175 Oxidoreductase NAD-binding domain S40542_RS19695 PF00258 Flavodoxin S40542_RS19695 PF00667 FAD binding domain S40542_RS19700 PF04231 Endonuclease I S40542_RS19720 PF04231 Endonuclease I S40542_RS19740 PF00005 ABC transporter S40542_RS19740 PF00664 ABC transporter transmembrane region S40542_RS19745 PF00425 chorismate binding enzyme S40542_RS19750 PF13193 AMP-binding enzyme C-terminal domain S40542_RS19750 PF00501 AMP-binding enzyme S40542_RS19755 PF00550 Phosphopantetheine attachment site S40542_RS19755 PF00857 Isochorismatase family S40542_RS19760 PF13193 AMP-binding enzyme C-terminal domain S40542_RS19760 PF00501 AMP-binding enzyme S40542_RS19760 PF00668 Condensation domain S40542_RS19760 PF00550 Phosphopantetheine attachment site S40542_RS19760 PF00975 Thioesterase domain S40542_RS19770 PF00593 TonB dependent receptor S40542_RS19770 PF07715 TonB-dependent Receptor Plug Domain S40542_RS19790 PF00550 Phosphopantetheine attachment site S40542_RS19790 PF00668 Condensation domain S40542_RS19790 PF00501 AMP-binding enzyme S40542_RS19790 PF13193 AMP-binding enzyme C-terminal domain S40542_RS19790 PF00975 Thioesterase domain S40542_RS19795 PF00668 Condensation domain S40542_RS19795 PF13193 AMP-binding enzyme C-terminal domain S40542_RS19795 PF00501 AMP-binding enzyme S40542_RS19795 PF00550 Phosphopantetheine attachment site S40542_RS19800 PF00501 AMP-binding enzyme S40542_RS19800 PF13193 AMP-binding enzyme C-terminal domain S40542_RS19800 PF00668 Condensation domain S40542_RS19800 PF00550 Phosphopantetheine attachment site S40542_RS19805 PF00550 Phosphopantetheine attachment site S40542_RS19805 PF13193 AMP-binding enzyme C-terminal domain S40542_RS19805 PF00501 AMP-binding enzyme S40542_RS19805 PF00668 Condensation domain S40542_RS19810 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS19810 PF00550 Phosphopantetheine attachment site S40542_RS19810 PF00698 Acyl transferase domain S40542_RS19810 PF16197 Ketoacyl-synthetase C-terminal extension S40542_RS19810 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS19810 PF00668 Condensation domain S40542_RS19815 PF00550 Phosphopantetheine attachment site S40542_RS19815 PF00668 Condensation domain S40542_RS19815 PF13193 AMP-binding enzyme C-terminal domain S40542_RS19815 PF00501 AMP-binding enzyme S40542_RS19820 PF03621 MbtH-like protein S40542_RS19825 PF01804 Penicillin amidase S40542_RS19850 PF00694 Aconitase C-terminal domain S40542_RS19855 PF00330 Aconitase family (aconitate hydratase) S40542_RS19860 PF00180 Isocitrate/isopropylmalate dehydrogenase S40542_RS19865 PF00682 HMGL-like S40542_RS19865 PF08502 LeuA allosteric (dimerisation) domain S40542_RS19905 PF00440 Bacterial regulatory proteins, tetR family S40542_RS19915 PF07992 Pyridine nucleotide-disulphide oxidoreductase S40542_RS19915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S40542_RS19930 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation S40542_RS19930 PF14508 Glycosyl-hydrolase 97 N-terminal S40542_RS19930 PF10566 Glycoside hydrolase 97 S40542_RS19940 PF12833 Helix-turn-helix domain S40542_RS19940 PF02311 AraC-like ligand binding domain S40542_RS19945 PF02838 Glycosyl hydrolase family 20, domain 2 S40542_RS19945 PF00728 Glycosyl hydrolase family 20, catalytic domain S40542_RS19950 PF01965 DJ-1/PfpI family S40542_RS19950 PF12833 Helix-turn-helix domain S40542_RS19955 PF12833 Helix-turn-helix domain S40542_RS19955 PF02311 AraC-like ligand binding domain S40542_RS19960 PF00089 Trypsin S40542_RS19980 PF01381 Helix-turn-helix S40542_RS19980 PF00717 Peptidase S24-like S40542_RS20025 PF02541 Ppx/GppA phosphatase family S40542_RS20030 PF00270 DEAD/DEAH box helicase S40542_RS20030 PF00271 Helicase conserved C-terminal domain S40542_RS20035 PF00085 Thioredoxin S40542_RS20040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S40542_RS20040 PF07497 Rho termination factor, RNA-binding domain S40542_RS20040 PF07498 Rho termination factor, N-terminal domain S40542_RS20045 PF00672 HAMP domain S40542_RS20045 PF17200 Single Cache domain 2 S40542_RS20045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS20050 PF00072 Response regulator receiver domain S40542_RS20050 PF09308 LuxQ, periplasmic S40542_RS20050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS20050 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS20060 PF00270 DEAD/DEAH box helicase S40542_RS20060 PF00271 Helicase conserved C-terminal domain S40542_RS20060 PF03880 DbpA RNA binding domain S40542_RS20065 PF04389 Peptidase family M28 S40542_RS20065 PF04151 Bacterial pre-peptidase C-terminal domain S40542_RS20075 PF03707 Bacterial signalling protein N terminal repeat S40542_RS20075 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS20075 PF00563 EAL domain S40542_RS20080 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase S40542_RS20085 PF00175 Oxidoreductase NAD-binding domain S40542_RS20090 PF00571 CBS domain S40542_RS20090 PF01368 DHH family S40542_RS20090 PF02272 DHHA1 domain S40542_RS20090 PF01743 Poly A polymerase head domain S40542_RS20095 PF00962 Adenosine/AMP deaminase S40542_RS20110 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain S40542_RS20110 PF03900 Porphobilinogen deaminase, C-terminal domain S40542_RS20125 PF01491 Frataxin-like domain S40542_RS20135 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain S40542_RS20135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain S40542_RS20140 PF01678 Diaminopimelate epimerase S40542_RS20150 PF00589 Phage integrase family S40542_RS20150 PF02899 Phage integrase, N-terminal SAM-like domain S40542_RS20155 PF13419 Haloacid dehalogenase-like hydrolase S40542_RS20160 PF00854 POT family S40542_RS20165 PF16363 GDP-mannose 4,6 dehydratase S40542_RS20185 PF01479 S4 domain S40542_RS20185 PF00849 RNA pseudouridylate synthase S40542_RS20200 PF00990 Diguanylate cyclase, GGDEF domain S40542_RS20200 PF07694 5TMR of 5TMR-LYT S40542_RS20210 PF00672 HAMP domain S40542_RS20210 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS20210 PF01627 Hpt domain S40542_RS20210 PF00072 Response regulator receiver domain S40542_RS20210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S40542_RS20210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS20215 PF04337 Protein of unknown function, DUF480 S40542_RS20220 PF02540 NAD synthase S40542_RS20230 PF01227 GTP cyclohydrolase I S40542_RS20235 PF02152 Dihydroneopterin aldolase S40542_RS20255 PF00082 Subtilase family S40542_RS20255 PF05922 Peptidase inhibitor I9 S40542_RS20255 PF13860 FlgD Ig-like domain S40542_RS20255 PF02225 PA domain S40542_RS20275 PF00155 Aminotransferase class I and II S40542_RS20275 PF00392 Bacterial regulatory proteins, gntR family S40542_RS20285 PF00781 Diacylglycerol kinase catalytic domain S40542_RS20300 PF00753 Metallo-beta-lactamase superfamily S40542_RS20305 PF00266 Aminotransferase class-V S40542_RS20315 PF01037 Lrp/AsnC ligand binding domain S40542_RS20320 PF00072 Response regulator receiver domain S40542_RS20320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS20320 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS20320 PF09308 LuxQ, periplasmic S40542_RS20345 PF00206 Lyase S40542_RS20345 PF10415 Fumarase C C-terminus S40542_RS20360 PF08240 Alcohol dehydrogenase GroES-like domain S40542_RS20360 PF14765 Polyketide synthase dehydratase S40542_RS20360 PF16197 Ketoacyl-synthetase C-terminal extension S40542_RS20360 PF00109 Beta-ketoacyl synthase, N-terminal domain S40542_RS20360 PF08659 KR domain S40542_RS20360 PF02801 Beta-ketoacyl synthase, C-terminal domain S40542_RS20360 PF00698 Acyl transferase domain S40542_RS20360 PF00550 Phosphopantetheine attachment site S40542_RS20365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S40542_RS20365 PF03466 LysR substrate binding domain S40542_RS20380 PF12833 Helix-turn-helix domain S40542_RS20390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS20390 PF12729 Four helix bundle sensory module for signal transduction S40542_RS20390 PF00672 HAMP domain S40542_RS20395 PF00553 Cellulose binding domain S40542_RS20395 PF00150 Cellulase (glycosyl hydrolase family 5) S40542_RS20400 PF01126 Heme oxygenase S40542_RS20405 PF04304 Protein of unknown function (DUF454) S40542_RS20415 PF04542 Sigma-70 region 2 S40542_RS20415 PF08281 Sigma-70, region 4 S40542_RS20445 PF00664 ABC transporter transmembrane region S40542_RS20445 PF00005 ABC transporter S40542_RS20450 PF00529 HlyD membrane-fusion protein of T1SS S40542_RS20455 PF01618 MotA/TolQ/ExbB proton channel family S40542_RS20460 PF02472 Biopolymer transport protein ExbD/TolR S40542_RS20475 PF01381 Helix-turn-helix S40542_RS20505 PF01381 Helix-turn-helix S40542_RS20510 PF01380 SIS domain S40542_RS20515 PF00455 DeoR C terminal sensor domain S40542_RS20515 PF08220 DeoR-like helix-turn-helix domain S40542_RS20525 PF12704 MacB-like periplasmic core domain S40542_RS20525 PF02687 FtsX-like permease family S40542_RS20525 PF00005 ABC transporter S40542_RS20530 PF02687 FtsX-like permease family S40542_RS20530 PF12704 MacB-like periplasmic core domain S40542_RS20530 PF00005 ABC transporter S40542_RS20540 PF00158 Sigma-54 interaction domain S40542_RS20540 PF00072 Response regulator receiver domain S40542_RS20540 PF02954 Bacterial regulatory protein, Fis family S40542_RS20545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS20545 PF00989 PAS fold S40542_RS20545 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS20565 PF01476 LysM domain S40542_RS20565 PF01464 Transglycosylase SLT domain S40542_RS20590 PF14028 Lantibiotic biosynthesis dehydratase C-term S40542_RS20590 PF04738 Lantibiotic dehydratase, N terminus S40542_RS20595 PF05147 Lanthionine synthetase C-like protein S40542_RS20600 PF00664 ABC transporter transmembrane region S40542_RS20600 PF03412 Peptidase C39 family S40542_RS20600 PF00005 ABC transporter S40542_RS20610 PF00132 Bacterial transferase hexapeptide (six repeats) S40542_RS20610 PF14602 Hexapeptide repeat of succinyl-transferase S40542_RS20610 PF12804 MobA-like NTP transferase domain S40542_RS20650 PF00005 ABC transporter S40542_RS20650 PF00664 ABC transporter transmembrane region S40542_RS20650 PF03412 Peptidase C39 family S40542_RS20665 PF00486 Transcriptional regulatory protein, C terminal S40542_RS20665 PF18500 CadC C-terminal domain 1 S40542_RS20670 PF00196 Bacterial regulatory proteins, luxR family S40542_RS20670 PF03472 Autoinducer binding domain S40542_RS20685 PF18500 CadC C-terminal domain 1 S40542_RS20685 PF00486 Transcriptional regulatory protein, C terminal S40542_RS20690 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain S40542_RS20690 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain S40542_RS20695 PF02874 ATP synthase alpha/beta family, beta-barrel domain S40542_RS20695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S40542_RS20700 PF00231 ATP synthase S40542_RS20705 PF00306 ATP synthase alpha/beta chain, C terminal domain S40542_RS20705 PF02874 ATP synthase alpha/beta family, beta-barrel domain S40542_RS20705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S40542_RS20710 PF00213 ATP synthase delta (OSCP) subunit S40542_RS20715 PF00430 ATP synthase B/B' CF(0) S40542_RS20720 PF00137 ATP synthase subunit C S40542_RS20725 PF00119 ATP synthase A chain S40542_RS20735 PF02195 ParB-like nuclease domain S40542_RS20735 PF17762 HTH domain found in ParB protein S40542_RS20740 PF13614 AAA domain S40542_RS20745 PF02527 rRNA small subunit methyltransferase G S40542_RS20750 PF01134 Glucose inhibited division protein A S40542_RS20750 PF13932 GidA associated domain S40542_RS20755 PF00258 Flavodoxin S40542_RS20760 PF01926 50S ribosome-binding GTPase S40542_RS20760 PF10396 GTP-binding protein TrmE N-terminus S40542_RS20760 PF12631 MnmE helical domain S40542_RS20780 PF02683 Cytochrome C biogenesis protein transmembrane region S40542_RS20780 PF11412 Disulphide bond corrector protein DsbC S40542_RS20785 PF14849 YidC periplasmic domain S40542_RS20785 PF02096 60Kd inner membrane protein S40542_RS20790 PF01809 Putative membrane protein insertion efficiency factor S40542_RS20795 PF00825 Ribonuclease P S40542_RS20800 PF00468 Ribosomal protein L34 S40542_RS20855 PF00378 Enoyl-CoA hydratase/isomerase S40542_RS20855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain S40542_RS20855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain S40542_RS21170 PF01209 ubiE/COQ5 methyltransferase family S40542_RS21530 PF07993 Male sterility protein S40542_RS21530 PF00668 Condensation domain S40542_RS21530 PF13193 AMP-binding enzyme C-terminal domain S40542_RS21530 PF00550 Phosphopantetheine attachment site S40542_RS21530 PF00501 AMP-binding enzyme S40542_RS21690 PF02696 Uncharacterized ACR, YdiU/UPF0061 family S40542_RS21850 PF01553 Acyltransferase S40542_RS21925 PF00563 EAL domain S40542_RS21925 PF12792 CSS motif domain associated with EAL S40542_RS21955 PF07724 AAA domain (Cdc48 subfamily) S40542_RS21955 PF00004 ATPase family associated with various cellular activities (AAA) S40542_RS21955 PF10431 C-terminal, D2-small domain, of ClpB protein S40542_RS22110 PF00585 C-terminal regulatory domain of Threonine dehydratase S40542_RS22110 PF00291 Pyridoxal-phosphate dependent enzyme S40542_RS22125 PF00484 Carbonic anhydrase S40542_RS22445 PF00550 Phosphopantetheine attachment site S40542_RS22445 PF00668 Condensation domain S40542_RS22445 PF13193 AMP-binding enzyme C-terminal domain S40542_RS22445 PF00501 AMP-binding enzyme S40542_RS22455 PF00668 Condensation domain S40542_RS22455 PF00501 AMP-binding enzyme S40542_RS22455 PF00550 Phosphopantetheine attachment site S40542_RS22455 PF13193 AMP-binding enzyme C-terminal domain S40542_RS22525 PF00118 TCP-1/cpn60 chaperonin family S40542_RS22615 PF00672 HAMP domain S40542_RS22615 PF02203 Tar ligand binding domain homologue S40542_RS22615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S40542_RS22720 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase S40542_RS22720 PF13746 4Fe-4S dicluster domain S40542_RS22720 PF12801 4Fe-4S binding domain S40542_RS22930 PF02601 Exonuclease VII, large subunit S40542_RS22930 PF13742 OB-fold nucleic acid binding domain S40542_RS22935 PF00478 IMP dehydrogenase / GMP reductase domain S40542_RS22935 PF00571 CBS domain S40542_RS22990 PF03485 Arginyl tRNA synthetase N terminal domain S40542_RS22990 PF05746 DALR anticodon binding domain S40542_RS22990 PF00750 tRNA synthetases class I (R) S40542_RS23070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S40542_RS23070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S40542_RS23190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS23190 PF02743 Cache domain S40542_RS23190 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS23510 PF00149 Calcineurin-like phosphoesterase S40542_RS23510 PF02872 5'-nucleotidase, C-terminal domain S40542_RS23780 PF00512 His Kinase A (phospho-acceptor) domain S40542_RS23780 PF02743 Cache domain S40542_RS23780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S40542_RS24005 PF01061 ABC-2 type transporter S40542_RS24355 PF00593 TonB dependent receptor S40542_RS24355 PF07660 Secretin and TonB N terminus short domain S40542_RS24355 PF07715 TonB-dependent Receptor Plug Domain S40542_RS24530 PF01520 N-acetylmuramoyl-L-alanine amidase S40542_RS24615 PF00596 Class II Aldolase and Adducin N-terminal domain S40542_RS24620 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain S40542_RS24620 PF13378 Enolase C-terminal domain-like S40542_RS24710 PF00570 HRDC domain S40542_RS24710 PF16124 RecQ zinc-binding S40542_RS24710 PF00271 Helicase conserved C-terminal domain S40542_RS24710 PF09382 RQC domain S40542_RS24710 PF00270 DEAD/DEAH box helicase S40542_RS24950 PF11849 Domain of unknown function (DUF3369) S40542_RS24980 PF02673 Bacitracin resistance protein BacA S40542_RS25080 PF00912 Transglycosylase S40542_RS25080 PF14814 Bifunctional transglycosylase second domain S40542_RS25080 PF00905 Penicillin binding protein transpeptidase domain S40542_RS25180 PF01032 FecCD transport family S40542_RS25565 PF08329 Chitinase A, N-terminal domain S40542_RS25565 PF00704 Glycosyl hydrolases family 18 S40542_RS25690 PF03968 OstA-like protein S40542_RS25690 PF04453 LPS transport system D