locus-tag class description HYD28_RS00010 PF13580 SIS domain HYD28_RS00015 PF04972 BON domain HYD28_RS00020 PF04386 Stringent starvation protein B HYD28_RS00025 PF00043 Glutathione S-transferase, C-terminal domain HYD28_RS00025 PF02798 Glutathione S-transferase, N-terminal domain HYD28_RS00030 PF02167 Cytochrome C1 family HYD28_RS00035 PF00032 Cytochrome b(C-terminal)/b6/petD HYD28_RS00035 PF00033 Cytochrome b/b6/petB HYD28_RS00040 PF00355 Rieske [2Fe-2S] domain HYD28_RS00040 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HYD28_RS00050 PF01523 Putative modulator of DNA gyrase HYD28_RS00055 PF04751 Protein of unknown function (DUF615) HYD28_RS00065 PF01431 Peptidase family M13 HYD28_RS00065 PF05649 Peptidase family M13 HYD28_RS00070 PF00293 NUDIX domain HYD28_RS00090 PF01636 Phosphotransferase enzyme family HYD28_RS00105 PF10996 Beta-Casp domain HYD28_RS00105 PF00753 Metallo-beta-lactamase superfamily HYD28_RS00105 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HYD28_RS00115 PF00483 Nucleotidyl transferase HYD28_RS00120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HYD28_RS00120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HYD28_RS00120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HYD28_RS00125 PF02719 Polysaccharide biosynthesis protein HYD28_RS00135 PF02397 Bacterial sugar transferase HYD28_RS00140 PF01370 NAD dependent epimerase/dehydratase family HYD28_RS00150 PF02350 UDP-N-acetylglucosamine 2-epimerase HYD28_RS00160 PF08485 Polysaccharide biosynthesis protein C-terminal HYD28_RS00160 PF02719 Polysaccharide biosynthesis protein HYD28_RS00185 PF01370 NAD dependent epimerase/dehydratase family HYD28_RS00190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HYD28_RS00190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HYD28_RS00190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HYD28_RS00195 PF02706 Chain length determinant protein HYD28_RS00195 PF13807 G-rich domain on putative tyrosine kinase HYD28_RS00195 PF13614 AAA domain HYD28_RS00200 PF01451 Low molecular weight phosphotyrosine protein phosphatase HYD28_RS00205 PF02563 Polysaccharide biosynthesis/export protein HYD28_RS00205 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HYD28_RS00205 PF10531 SLBB domain HYD28_RS00210 PF02350 UDP-N-acetylglucosamine 2-epimerase HYD28_RS00220 PF03808 Glycosyl transferase WecB/TagA/CpsF family HYD28_RS00225 PF13439 Glycosyltransferase Family 4 HYD28_RS00225 PF00534 Glycosyl transferases group 1 HYD28_RS00235 PF00535 Glycosyl transferase family 2 HYD28_RS00250 PF00483 Nucleotidyl transferase HYD28_RS00255 PF16363 GDP-mannose 4,6 dehydratase HYD28_RS00275 PF00132 Bacterial transferase hexapeptide (six repeats) HYD28_RS00280 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HYD28_RS00290 PF03958 Bacterial type II/III secretion system short domain HYD28_RS00290 PF00263 Bacterial type II and III secretion system protein HYD28_RS00330 PF00482 Type II secretion system (T2SS), protein F HYD28_RS00335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HYD28_RS00335 PF00437 Type II/IV secretion system protein HYD28_RS00340 PF08334 Type II secretion system (T2SS), protein G HYD28_RS00340 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS00350 PF10531 SLBB domain HYD28_RS00350 PF02563 Polysaccharide biosynthesis/export protein HYD28_RS00355 PF04338 Protein of unknown function, DUF481 HYD28_RS00360 PF00924 Mechanosensitive ion channel HYD28_RS00360 PF05552 Conserved TM helix HYD28_RS00395 PF13280 WYL domain HYD28_RS00395 PF08279 HTH domain HYD28_RS00400 PF00350 Dynamin family HYD28_RS00420 PF03173 Putative carbohydrate binding domain HYD28_RS00420 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HYD28_RS00420 PF02838 Glycosyl hydrolase family 20, domain 2 HYD28_RS00420 PF00728 Glycosyl hydrolase family 20, catalytic domain HYD28_RS00430 PF00171 Aldehyde dehydrogenase family HYD28_RS00435 PF00111 2Fe-2S iron-sulfur cluster binding domain HYD28_RS00445 PF07743 HSCB C-terminal oligomerisation domain HYD28_RS00450 PF01521 Iron-sulphur cluster biosynthesis HYD28_RS00455 PF01592 NifU-like N terminal domain HYD28_RS00465 PF02082 Transcriptional regulator HYD28_RS00470 PF00588 SpoU rRNA Methylase family HYD28_RS00475 PF00459 Inositol monophosphatase family HYD28_RS00485 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS00485 PF07694 5TMR of 5TMR-LYT HYD28_RS00500 PF04966 Carbohydrate-selective porin, OprB family HYD28_RS00510 PF08125 Mannitol dehydrogenase C-terminal domain HYD28_RS00510 PF01232 Mannitol dehydrogenase Rossmann domain HYD28_RS00515 PF02355 Protein export membrane protein HYD28_RS00515 PF07549 SecD/SecF GG Motif HYD28_RS00520 PF13721 SecD export protein N-terminal TM region HYD28_RS00520 PF02355 Protein export membrane protein HYD28_RS00520 PF07549 SecD/SecF GG Motif HYD28_RS00525 PF02699 Preprotein translocase subunit HYD28_RS00540 PF00563 EAL domain HYD28_RS00540 PF08448 PAS fold HYD28_RS00540 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS00565 PF03466 LysR substrate binding domain HYD28_RS00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS00570 PF01384 Phosphate transporter family HYD28_RS00575 PF01865 Protein of unknown function DUF47 HYD28_RS00580 PF01895 PhoU domain HYD28_RS00590 PF00528 Binding-protein-dependent transport system inner membrane component HYD28_RS00595 PF00528 Binding-protein-dependent transport system inner membrane component HYD28_RS00605 PF17941 Polyphosphate kinase C-terminal domain 1 HYD28_RS00605 PF13090 Polyphosphate kinase C-terminal domain 2 HYD28_RS00605 PF02503 Polyphosphate kinase middle domain HYD28_RS00605 PF13089 Polyphosphate kinase N-terminal domain HYD28_RS00610 PF02541 Ppx/GppA phosphatase family HYD28_RS00620 PF00873 AcrB/AcrD/AcrF family HYD28_RS00625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS00625 PF00529 HlyD membrane-fusion protein of T1SS HYD28_RS00640 PF04403 Paraquat-inducible protein A HYD28_RS00645 PF00563 EAL domain HYD28_RS00645 PF08668 HDOD domain HYD28_RS00655 PF03831 PhnA domain HYD28_RS00655 PF08274 PhnA Zinc-Ribbon HYD28_RS00665 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HYD28_RS00675 PF05164 Cell division protein ZapA HYD28_RS00685 PF01464 Transglycosylase SLT domain HYD28_RS00685 PF01476 LysM domain HYD28_RS00690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYD28_RS00700 PF04909 Amidohydrolase HYD28_RS00710 PF13378 Enolase C-terminal domain-like HYD28_RS00710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HYD28_RS00715 PF00596 Class II Aldolase and Adducin N-terminal domain HYD28_RS00720 PF00034 Cytochrome c HYD28_RS00725 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HYD28_RS00730 PF07690 Major Facilitator Superfamily HYD28_RS00735 PF04073 Aminoacyl-tRNA editing domain HYD28_RS00760 PF00999 Sodium/hydrogen exchanger family HYD28_RS00760 PF03471 Transporter associated domain HYD28_RS00765 PF08238 Sel1 repeat HYD28_RS00775 PF01145 SPFH domain / Band 7 family HYD28_RS00780 PF12221 Bacterial membrane protein N terminal HYD28_RS00780 PF01145 SPFH domain / Band 7 family HYD28_RS00785 PF01926 50S ribosome-binding GTPase HYD28_RS00785 PF16360 GTP-binding GTPase Middle Region HYD28_RS00785 PF13167 GTP-binding GTPase N-terminal HYD28_RS00805 PF01520 N-acetylmuramoyl-L-alanine amidase HYD28_RS00810 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HYD28_RS00815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HYD28_RS00815 PF00289 Biotin carboxylase, N-terminal domain HYD28_RS00815 PF02785 Biotin carboxylase C-terminal domain HYD28_RS00820 PF00364 Biotin-requiring enzyme HYD28_RS00830 PF11412 Disulphide bond corrector protein DsbC HYD28_RS00830 PF02683 Cytochrome C biogenesis protein transmembrane region HYD28_RS00835 PF03091 CutA1 divalent ion tolerance protein HYD28_RS00840 PF04186 FxsA cytoplasmic membrane protein HYD28_RS00860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS00860 PF08446 PAS fold HYD28_RS00860 PF00360 Phytochrome region HYD28_RS00860 PF01590 GAF domain HYD28_RS00860 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS00865 PF01381 Helix-turn-helix HYD28_RS00870 PF00072 Response regulator receiver domain HYD28_RS00875 PF03853 YjeF-related protein N-terminus HYD28_RS00875 PF01256 Carbohydrate kinase HYD28_RS00885 PF02566 OsmC-like protein HYD28_RS00900 PF04958 Arginine N-succinyltransferase beta subunit HYD28_RS00905 PF00202 Aminotransferase class-III HYD28_RS00915 PF00117 Glutamine amidotransferase class-I HYD28_RS00930 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS00930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS00930 PF00672 HAMP domain HYD28_RS00935 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS00935 PF00072 Response regulator receiver domain HYD28_RS00940 PF01272 Transcription elongation factor, GreA/GreB, C-term HYD28_RS00940 PF03449 Transcription elongation factor, N-terminal HYD28_RS00955 PF17674 HHH domain HYD28_RS00955 PF00575 S1 RNA binding domain HYD28_RS00955 PF09371 Tex-like protein N-terminal domain HYD28_RS00955 PF16921 Tex protein YqgF-like domain HYD28_RS00970 PF00561 alpha/beta hydrolase fold HYD28_RS00975 PF00156 Phosphoribosyl transferase domain HYD28_RS00995 PF01554 MatE HYD28_RS01000 PF01522 Polysaccharide deacetylase HYD28_RS01005 PF01339 CheB methylesterase HYD28_RS01005 PF00072 Response regulator receiver domain HYD28_RS01010 PF03975 CheD chemotactic sensory transduction HYD28_RS01015 PF03705 CheR methyltransferase, all-alpha domain HYD28_RS01015 PF01739 CheR methyltransferase, SAM binding domain HYD28_RS01020 PF02203 Tar ligand binding domain homologue HYD28_RS01020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS01020 PF00672 HAMP domain HYD28_RS01025 PF01584 CheW-like domain HYD28_RS01030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS01030 PF01627 Hpt domain HYD28_RS01030 PF02895 Signal transducing histidine kinase, homodimeric domain HYD28_RS01030 PF09078 CheY binding HYD28_RS01030 PF01584 CheW-like domain HYD28_RS01035 PF00072 Response regulator receiver domain HYD28_RS01045 PF02630 SCO1/SenC HYD28_RS01075 PF00510 Cytochrome c oxidase subunit III HYD28_RS01080 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 HYD28_RS01085 PF00115 Cytochrome C and Quinol oxidase polypeptide I HYD28_RS01090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HYD28_RS01090 PF02790 Cytochrome C oxidase subunit II, transmembrane domain HYD28_RS01095 PF01726 LexA DNA binding domain HYD28_RS01095 PF00717 Peptidase S24-like HYD28_RS01100 PF03061 Thioesterase superfamily HYD28_RS01120 PF04231 Endonuclease I HYD28_RS01135 PF00970 Oxidoreductase FAD-binding domain HYD28_RS01135 PF00042 Globin HYD28_RS01135 PF00175 Oxidoreductase NAD-binding domain HYD28_RS01145 PF00158 Sigma-54 interaction domain HYD28_RS01145 PF01590 GAF domain HYD28_RS01155 PF03358 NADPH-dependent FMN reductase HYD28_RS01190 PF00682 HMGL-like HYD28_RS01190 PF08502 LeuA allosteric (dimerisation) domain HYD28_RS01195 PF00440 Bacterial regulatory proteins, tetR family HYD28_RS01205 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYD28_RS01205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYD28_RS01215 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HYD28_RS01220 PF17676 LD-carboxypeptidase C-terminal domain HYD28_RS01220 PF02016 LD-carboxypeptidase N-terminal domain HYD28_RS01225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HYD28_RS01225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYD28_RS01240 PF09526 Probable metal-binding protein (DUF2387) HYD28_RS01260 PF00561 alpha/beta hydrolase fold HYD28_RS01265 PF06794 Uncharacterised protein family (UPF0270) HYD28_RS01315 PF08279 HTH domain HYD28_RS01315 PF03099 Biotin/lipoate A/B protein ligase family HYD28_RS01315 PF02237 Biotin protein ligase C terminal domain HYD28_RS01325 PF01433 Peptidase family M1 domain HYD28_RS01335 PF01230 HIT domain HYD28_RS01345 PF00672 HAMP domain HYD28_RS01345 PF17149 Periplasmic sensor domain found in signal transduction proteins HYD28_RS01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS01345 PF01627 Hpt domain HYD28_RS01345 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS01345 PF00072 Response regulator receiver domain HYD28_RS01375 PF00203 Ribosomal protein S19 HYD28_RS01430 PF01584 CheW-like domain HYD28_RS01430 PF00072 Response regulator receiver domain HYD28_RS01435 PF02667 Short chain fatty acid transporter HYD28_RS01445 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS01445 PF00563 EAL domain HYD28_RS01445 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS01450 PF01595 Cyclin M transmembrane N-terminal domain HYD28_RS01450 PF00571 CBS domain HYD28_RS01455 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region HYD28_RS01455 PF00326 Prolyl oligopeptidase family HYD28_RS01460 PF00072 Response regulator receiver domain HYD28_RS01460 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS01495 PF07693 KAP family P-loop domain HYD28_RS01515 PF04229 GrpB protein HYD28_RS01515 PF13673 Acetyltransferase (GNAT) domain HYD28_RS01545 PF03458 UPF0126 domain HYD28_RS01550 PF01050 Mannose-6-phosphate isomerase HYD28_RS01550 PF00483 Nucleotidyl transferase HYD28_RS01555 PF00795 Carbon-nitrogen hydrolase HYD28_RS01560 PF00155 Aminotransferase class I and II HYD28_RS01575 PF03079 ARD/ARD' family HYD28_RS01585 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS01585 PF18500 CadC C-terminal domain 1 HYD28_RS01590 PF01008 Initiation factor 2 subunit family HYD28_RS01595 PF01636 Phosphotransferase enzyme family HYD28_RS01600 PF01645 Conserved region in glutamate synthase HYD28_RS01625 PF03109 ABC1 family HYD28_RS01635 PF02416 mttA/Hcf106 family HYD28_RS01640 PF00902 Sec-independent protein translocase protein (TatC) HYD28_RS01650 PF01026 TatD related DNase HYD28_RS01655 PF01590 GAF domain HYD28_RS01655 PF00563 EAL domain HYD28_RS01655 PF00360 Phytochrome region HYD28_RS01655 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS01660 PF00490 Delta-aminolevulinic acid dehydratase HYD28_RS01675 PF00679 Elongation factor G C-terminus HYD28_RS01675 PF14492 Elongation Factor G, domain II HYD28_RS01675 PF03764 Elongation factor G, domain IV HYD28_RS01675 PF03144 Elongation factor Tu domain 2 HYD28_RS01675 PF00009 Elongation factor Tu GTP binding domain HYD28_RS01680 PF00072 Response regulator receiver domain HYD28_RS01680 PF08279 HTH domain HYD28_RS01680 PF12431 Transcriptional regulator HYD28_RS01685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS01685 PF00989 PAS fold HYD28_RS01685 PF17203 Single cache domain 3 HYD28_RS01685 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HYD28_RS01690 PF01970 Tripartite tricarboxylate transporter TctA family HYD28_RS01700 PF03401 Tripartite tricarboxylate transporter family receptor HYD28_RS01710 PF01144 Coenzyme A transferase HYD28_RS01725 PF00561 alpha/beta hydrolase fold HYD28_RS01735 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS01735 PF00593 TonB dependent receptor HYD28_RS01740 PF00072 Response regulator receiver domain HYD28_RS01740 PF00196 Bacterial regulatory proteins, luxR family HYD28_RS01745 PF00144 Beta-lactamase HYD28_RS01755 PF02687 FtsX-like permease family HYD28_RS01755 PF12704 MacB-like periplasmic core domain HYD28_RS01755 PF00005 ABC transporter HYD28_RS01765 PF00158 Sigma-54 interaction domain HYD28_RS01765 PF00072 Response regulator receiver domain HYD28_RS01765 PF02954 Bacterial regulatory protein, Fis family HYD28_RS01770 PF00989 PAS fold HYD28_RS01770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS01770 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS01770 PF08447 PAS fold HYD28_RS01790 PF01627 Hpt domain HYD28_RS01790 PF00989 PAS fold HYD28_RS01790 PF00072 Response regulator receiver domain HYD28_RS01790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS01790 PF18415 Histidine kinase receptor ArcB trans-membrane domain HYD28_RS01790 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS01795 PF01926 50S ribosome-binding GTPase HYD28_RS01800 PF11808 Phosphate regulon sensor protein PhoR HYD28_RS01800 PF00989 PAS fold HYD28_RS01800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS01800 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS01805 PF00072 Response regulator receiver domain HYD28_RS01805 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS01815 PF07152 YaeQ protein HYD28_RS01830 PF00210 Ferritin-like domain HYD28_RS01840 PF00326 Prolyl oligopeptidase family HYD28_RS01840 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HYD28_RS01845 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HYD28_RS01845 PF18416 N-acetylglucosamine binding protein domain 2 HYD28_RS01895 PF01263 Aldose 1-epimerase HYD28_RS01900 PF01047 MarR family HYD28_RS01935 PF07681 DoxX HYD28_RS01940 PF05726 Pirin C-terminal cupin domain HYD28_RS01940 PF02678 Pirin HYD28_RS01945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS01945 PF03466 LysR substrate binding domain HYD28_RS01950 PF08450 SMP-30/Gluconolactonase/LRE-like region HYD28_RS01965 PF07729 FCD domain HYD28_RS01965 PF00392 Bacterial regulatory proteins, gntR family HYD28_RS01970 PF00474 Sodium:solute symporter family HYD28_RS01975 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain HYD28_RS01975 PF04616 Glycosyl hydrolases family 43 HYD28_RS01980 PF04616 Glycosyl hydrolases family 43 HYD28_RS02000 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS02000 PF00593 TonB dependent receptor HYD28_RS02010 PF16369 C-terminal lipocalin-like domain HYD28_RS02010 PF04616 Glycosyl hydrolases family 43 HYD28_RS02035 PF01263 Aldose 1-epimerase HYD28_RS02040 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS02045 PF02610 L-arabinose isomerase HYD28_RS02045 PF11762 L-arabinose isomerase C-terminal domain HYD28_RS02050 PF00596 Class II Aldolase and Adducin N-terminal domain HYD28_RS02055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HYD28_RS02060 PF00923 Transaldolase/Fructose-6-phosphate aldolase HYD28_RS02065 PF00456 Transketolase, thiamine diphosphate binding domain HYD28_RS02065 PF02780 Transketolase, C-terminal domain HYD28_RS02065 PF02779 Transketolase, pyrimidine binding domain HYD28_RS02075 PF00593 TonB dependent receptor HYD28_RS02075 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS02105 PF00593 TonB dependent receptor HYD28_RS02105 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS02115 PF14685 Tricorn protease PDZ domain HYD28_RS02115 PF03572 Peptidase family S41 HYD28_RS02115 PF07676 WD40-like Beta Propeller Repeat HYD28_RS02115 PF14684 Tricorn protease C1 domain HYD28_RS02120 PF00271 Helicase conserved C-terminal domain HYD28_RS02120 PF00270 DEAD/DEAH box helicase HYD28_RS02130 PF07969 Amidohydrolase family HYD28_RS02135 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS02135 PF17158 Membrane-associated sensor, integral membrane domain HYD28_RS02140 PF01380 SIS domain HYD28_RS02145 PF00455 DeoR C terminal sensor domain HYD28_RS02145 PF08220 DeoR-like helix-turn-helix domain HYD28_RS02160 PF00005 ABC transporter HYD28_RS02160 PF02687 FtsX-like permease family HYD28_RS02160 PF12704 MacB-like periplasmic core domain HYD28_RS02175 PF12464 Maltose acetyltransferase HYD28_RS02175 PF14602 Hexapeptide repeat of succinyl-transferase HYD28_RS02195 PF00005 ABC transporter HYD28_RS02195 PF12704 MacB-like periplasmic core domain HYD28_RS02195 PF02687 FtsX-like permease family HYD28_RS02200 PF12704 MacB-like periplasmic core domain HYD28_RS02200 PF02687 FtsX-like permease family HYD28_RS02200 PF00005 ABC transporter HYD28_RS02205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS02210 PF00072 Response regulator receiver domain HYD28_RS02210 PF02954 Bacterial regulatory protein, Fis family HYD28_RS02210 PF00158 Sigma-54 interaction domain HYD28_RS02215 PF00989 PAS fold HYD28_RS02215 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS02305 PF17762 HTH domain found in ParB protein HYD28_RS02305 PF02195 ParB-like nuclease domain HYD28_RS02310 PF13614 AAA domain HYD28_RS02340 PF00593 TonB dependent receptor HYD28_RS02340 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS02370 PF11638 DnaA N-terminal domain HYD28_RS02370 PF08299 Bacterial dnaA protein helix-turn-helix HYD28_RS02370 PF00308 Bacterial dnaA protein HYD28_RS02375 PF02768 DNA polymerase III beta subunit, C-terminal domain HYD28_RS02375 PF00712 DNA polymerase III beta subunit, N-terminal domain HYD28_RS02375 PF02767 DNA polymerase III beta subunit, central domain HYD28_RS02385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS02385 PF00986 DNA gyrase B subunit, carboxyl terminus HYD28_RS02385 PF00204 DNA gyrase B HYD28_RS02385 PF01751 Toprim domain HYD28_RS02385 PF18053 DNA gyrase B subunit insert domain HYD28_RS02415 PF00378 Enoyl-CoA hydratase/isomerase HYD28_RS02415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HYD28_RS02415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HYD28_RS02420 PF01464 Transglycosylase SLT domain HYD28_RS02420 PF14718 Soluble lytic murein transglycosylase L domain HYD28_RS02425 PF00557 Metallopeptidase family M24 HYD28_RS02430 PF09186 Domain of unknown function (DUF1949) HYD28_RS02430 PF01205 Uncharacterized protein family UPF0029 HYD28_RS02435 PF02386 Cation transport protein HYD28_RS02465 PF02254 TrkA-N domain HYD28_RS02465 PF02080 TrkA-C domain HYD28_RS02470 PF01029 NusB family HYD28_RS02470 PF01189 16S rRNA methyltransferase RsmB/F HYD28_RS02490 PF17782 DprA winged helix domain HYD28_RS02490 PF02481 DNA recombination-mediator protein A HYD28_RS02500 PF01396 Topoisomerase DNA binding C4 zinc finger HYD28_RS02510 PF01218 Coproporphyrinogen III oxidase HYD28_RS02520 PF00672 HAMP domain HYD28_RS02520 PF12729 Four helix bundle sensory module for signal transduction HYD28_RS02520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS02525 PF01152 Bacterial-like globin HYD28_RS02540 PF00132 Bacterial transferase hexapeptide (six repeats) HYD28_RS02620 PF10415 Fumarase C C-terminus HYD28_RS02620 PF00206 Lyase HYD28_RS02650 PF01037 Lrp/AsnC ligand binding domain HYD28_RS02660 PF00266 Aminotransferase class-V HYD28_RS02665 PF00753 Metallo-beta-lactamase superfamily HYD28_RS02690 PF00781 Diacylglycerol kinase catalytic domain HYD28_RS02700 PF00392 Bacterial regulatory proteins, gntR family HYD28_RS02700 PF00155 Aminotransferase class I and II HYD28_RS02715 PF00255 Glutathione peroxidase HYD28_RS02720 PF03466 LysR substrate binding domain HYD28_RS02720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS02725 PF00465 Iron-containing alcohol dehydrogenase HYD28_RS02735 PF03591 AzlC protein HYD28_RS02755 PF13860 FlgD Ig-like domain HYD28_RS02755 PF05922 Peptidase inhibitor I9 HYD28_RS02755 PF02225 PA domain HYD28_RS02755 PF00082 Subtilase family HYD28_RS02760 PF00326 Prolyl oligopeptidase family HYD28_RS02760 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HYD28_RS02765 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS02770 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS02770 PF00072 Response regulator receiver domain HYD28_RS02790 PF09335 SNARE associated Golgi protein HYD28_RS02795 PF02152 Dihydroneopterin aldolase HYD28_RS02825 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS02825 PF01627 Hpt domain HYD28_RS02825 PF00072 Response regulator receiver domain HYD28_RS02825 PF00672 HAMP domain HYD28_RS02825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS02835 PF08448 PAS fold HYD28_RS02835 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS02845 PF00795 Carbon-nitrogen hydrolase HYD28_RS02845 PF00583 Acetyltransferase (GNAT) family HYD28_RS02850 PF00893 Small Multidrug Resistance protein HYD28_RS02870 PF03965 Penicillinase repressor HYD28_RS02875 PF00849 RNA pseudouridylate synthase HYD28_RS02875 PF01479 S4 domain HYD28_RS02900 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS02905 PF00589 Phage integrase family HYD28_RS02905 PF02899 Phage integrase, N-terminal SAM-like domain HYD28_RS02910 PF04340 Protein of unknown function, DUF484 HYD28_RS02920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HYD28_RS02920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HYD28_RS02935 PF02230 Phospholipase/Carboxylesterase HYD28_RS02945 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HYD28_RS02945 PF03900 Porphobilinogen deaminase, C-terminal domain HYD28_RS02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS02960 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS02960 PF09308 LuxQ, periplasmic HYD28_RS02960 PF00072 Response regulator receiver domain HYD28_RS02970 PF01743 Poly A polymerase head domain HYD28_RS02970 PF01368 DHH family HYD28_RS02970 PF00571 CBS domain HYD28_RS02970 PF02272 DHHA1 domain HYD28_RS02975 PF00175 Oxidoreductase NAD-binding domain HYD28_RS02990 PF05661 Protein of unknown function (DUF808) HYD28_RS02995 PF00326 Prolyl oligopeptidase family HYD28_RS03005 PF00271 Helicase conserved C-terminal domain HYD28_RS03005 PF00270 DEAD/DEAH box helicase HYD28_RS03005 PF03880 DbpA RNA binding domain HYD28_RS03015 PF01627 Hpt domain HYD28_RS03015 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS03015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS03015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS03015 PF00672 HAMP domain HYD28_RS03015 PF00072 Response regulator receiver domain HYD28_RS03020 PF16591 Helical bimodular sensor domain HYD28_RS03020 PF00672 HAMP domain HYD28_RS03020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS03025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HYD28_RS03025 PF07497 Rho termination factor, RNA-binding domain HYD28_RS03025 PF07498 Rho termination factor, N-terminal domain HYD28_RS03030 PF00085 Thioredoxin HYD28_RS03035 PF00271 Helicase conserved C-terminal domain HYD28_RS03035 PF00270 DEAD/DEAH box helicase HYD28_RS03070 PF13718 GNAT acetyltransferase 2 HYD28_RS03070 PF05127 Helicase HYD28_RS03075 PF13361 UvrD-like helicase C-terminal domain HYD28_RS03075 PF00580 UvrD/REP helicase N-terminal domain HYD28_RS03085 PF06062 Uncharacterised protein family (UPF0231) HYD28_RS03100 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS03105 PF00293 NUDIX domain HYD28_RS03110 PF00459 Inositol monophosphatase family HYD28_RS03145 PF00667 FAD binding domain HYD28_RS03145 PF00258 Flavodoxin HYD28_RS03145 PF00175 Oxidoreductase NAD-binding domain HYD28_RS03155 PF01507 Phosphoadenosine phosphosulfate reductase family HYD28_RS03180 PF00330 Aconitase family (aconitate hydratase) HYD28_RS03180 PF00694 Aconitase C-terminal domain HYD28_RS03210 PF00158 Sigma-54 interaction domain HYD28_RS03210 PF00072 Response regulator receiver domain HYD28_RS03210 PF02954 Bacterial regulatory protein, Fis family HYD28_RS03215 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS03215 PF00989 PAS fold HYD28_RS03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS03225 PF03951 Glutamine synthetase, beta-Grasp domain HYD28_RS03225 PF00120 Glutamine synthetase, catalytic domain HYD28_RS03240 PF12706 Beta-lactamase superfamily domain HYD28_RS03255 PF00561 alpha/beta hydrolase fold HYD28_RS03270 PF00583 Acetyltransferase (GNAT) family HYD28_RS03270 PF09500 Putative thioesterase (yiiD_Cterm) HYD28_RS03275 PF02253 Phospholipase A1 HYD28_RS03285 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HYD28_RS03285 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HYD28_RS03290 PF14602 Hexapeptide repeat of succinyl-transferase HYD28_RS03290 PF00132 Bacterial transferase hexapeptide (six repeats) HYD28_RS03290 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HYD28_RS03295 PF00701 Dihydrodipicolinate synthetase family HYD28_RS03310 PF01389 OmpA-like transmembrane domain HYD28_RS03310 PF00691 OmpA family HYD28_RS03315 PF00691 OmpA family HYD28_RS03330 PF00266 Aminotransferase class-V HYD28_RS03340 PF14508 Glycosyl-hydrolase 97 N-terminal HYD28_RS03340 PF10566 Glycoside hydrolase 97 HYD28_RS03340 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation HYD28_RS03355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS03355 PF00672 HAMP domain HYD28_RS03360 PF17284 Spermidine synthase tetramerisation domain HYD28_RS03365 PF17810 Arginine decarboxylase helical bundle domain HYD28_RS03365 PF17944 Arginine decarboxylase C-terminal helical extension HYD28_RS03365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HYD28_RS03370 PF01553 Acyltransferase HYD28_RS03375 PF01553 Acyltransferase HYD28_RS03380 PF00924 Mechanosensitive ion channel HYD28_RS03395 PF00691 OmpA family HYD28_RS03400 PF00664 ABC transporter transmembrane region HYD28_RS03400 PF00005 ABC transporter HYD28_RS03420 PF17967 Pullulanase N2 domain HYD28_RS03420 PF03714 Bacterial pullanase-associated domain HYD28_RS03420 PF18494 Pullulanase Ins domain HYD28_RS03420 PF11852 Domain of unknown function (DUF3372) HYD28_RS03420 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HYD28_RS03430 PF09423 PhoD-like phosphatase HYD28_RS03430 PF16655 PhoD-like phosphatase, N-terminal domain HYD28_RS03445 PF01022 Bacterial regulatory protein, arsR family HYD28_RS03450 PF00873 AcrB/AcrD/AcrF family HYD28_RS03465 PF17263 Family of unknown function (DUF5329) HYD28_RS03470 PF03372 Endonuclease/Exonuclease/phosphatase family HYD28_RS03475 PF06291 Bor protein HYD28_RS03485 PF02687 FtsX-like permease family HYD28_RS03485 PF12704 MacB-like periplasmic core domain HYD28_RS03490 PF00005 ABC transporter HYD28_RS03495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS03495 PF00529 HlyD membrane-fusion protein of T1SS HYD28_RS03505 PF00248 Aldo/keto reductase family HYD28_RS03585 PF00344 SecY translocase HYD28_RS03590 PF00444 Ribosomal protein L36 HYD28_RS03645 PF01479 S4 domain HYD28_RS03650 PF11356 Type II secretion system protein C HYD28_RS03655 PF03958 Bacterial type II/III secretion system short domain HYD28_RS03655 PF00263 Bacterial type II and III secretion system protein HYD28_RS03660 PF00437 Type II/IV secretion system protein HYD28_RS03665 PF00482 Type II secretion system (T2SS), protein F HYD28_RS03670 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS03670 PF08334 Type II secretion system (T2SS), protein G HYD28_RS03675 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS03675 PF12019 Type II transport protein GspH HYD28_RS03680 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS03680 PF02501 Type II secretion system (T2SS), protein I HYD28_RS03685 PF11612 Type II secretion system (T2SS), protein J HYD28_RS03685 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS03690 PF03934 Type II secretion system (T2SS), protein K HYD28_RS03695 PF12693 GspL periplasmic domain HYD28_RS03695 PF05134 Type II secretion system (T2SS), protein L HYD28_RS03725 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HYD28_RS03725 PF12801 4Fe-4S binding domain HYD28_RS03725 PF13746 4Fe-4S dicluster domain HYD28_RS03730 PF01636 Phosphotransferase enzyme family HYD28_RS03735 PF01323 DSBA-like thioredoxin domain HYD28_RS03740 PF01323 DSBA-like thioredoxin domain HYD28_RS03745 PF04463 Protein of unknown function (DUF523) HYD28_RS03760 PF01177 Asp/Glu/Hydantoin racemase HYD28_RS03765 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HYD28_RS03795 PF03222 Tryptophan/tyrosine permease family HYD28_RS03805 PF00459 Inositol monophosphatase family HYD28_RS03815 PF03600 Citrate transporter HYD28_RS03815 PF02080 TrkA-C domain HYD28_RS03820 PF00009 Elongation factor Tu GTP binding domain HYD28_RS03835 PF01791 DeoC/LacD family aldolase HYD28_RS03850 PF07495 Y_Y_Y domain HYD28_RS03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS03850 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS03850 PF12833 Helix-turn-helix domain HYD28_RS03850 PF07494 Two component regulator propeller HYD28_RS03850 PF00072 Response regulator receiver domain HYD28_RS03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS03850 PF12833 Helix-turn-helix domain HYD28_RS03850 PF07494 Two component regulator propeller HYD28_RS03850 PF00072 Response regulator receiver domain HYD28_RS03850 PF07495 Y_Y_Y domain HYD28_RS03850 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS03860 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HYD28_RS03865 PF02357 Transcription termination factor nusG HYD28_RS03865 PF00467 KOW motif HYD28_RS03920 PF00245 Alkaline phosphatase HYD28_RS03925 PF00245 Alkaline phosphatase HYD28_RS03935 PF18029 Glyoxalase-like domain HYD28_RS03935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HYD28_RS03955 PF09308 LuxQ, periplasmic HYD28_RS03955 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS03955 PF00072 Response regulator receiver domain HYD28_RS03965 PF00005 ABC transporter HYD28_RS03975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HYD28_RS03975 PF00205 Thiamine pyrophosphate enzyme, central domain HYD28_RS03975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HYD28_RS03990 PF00291 Pyridoxal-phosphate dependent enzyme HYD28_RS03990 PF00585 C-terminal regulatory domain of Threonine dehydratase HYD28_RS04005 PF00484 Carbonic anhydrase HYD28_RS04010 PF04380 Membrane fusogenic activity HYD28_RS04015 PF00580 UvrD/REP helicase N-terminal domain HYD28_RS04015 PF13361 UvrD-like helicase C-terminal domain HYD28_RS04020 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS04020 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS04020 PF00563 EAL domain HYD28_RS04025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HYD28_RS04035 PF01612 3'-5' exonuclease HYD28_RS04035 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HYD28_RS04035 PF01367 5'-3' exonuclease, C-terminal SAM fold HYD28_RS04035 PF00476 DNA polymerase family A HYD28_RS04040 PF00561 alpha/beta hydrolase fold HYD28_RS04060 PF00034 Cytochrome c HYD28_RS04070 PF10675 Protein of unknown function (DUF2489) HYD28_RS04075 PF04055 Radical SAM superfamily HYD28_RS04075 PF06969 HemN C-terminal domain HYD28_RS04100 PF01370 NAD dependent epimerase/dehydratase family HYD28_RS04120 PF04055 Radical SAM superfamily HYD28_RS04135 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS04155 PF01266 FAD dependent oxidoreductase HYD28_RS04170 PF02581 Thiamine monophosphate synthase HYD28_RS04175 PF00899 ThiF family HYD28_RS04185 PF03193 RsgA GTPase HYD28_RS04215 PF01894 Uncharacterised protein family UPF0047 HYD28_RS04225 PF01475 Ferric uptake regulator family HYD28_RS04230 PF01914 MarC family integral membrane protein HYD28_RS04240 PF01207 Dihydrouridine synthase (Dus) HYD28_RS04245 PF04012 PspA/IM30 family HYD28_RS04285 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS04285 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS04285 PF00563 EAL domain HYD28_RS04290 PF04055 Radical SAM superfamily HYD28_RS04290 PF11842 Domain of unknown function (DUF3362) HYD28_RS04290 PF08497 Radical SAM N-terminal HYD28_RS04295 PF03448 MgtE intracellular N domain HYD28_RS04295 PF01769 Divalent cation transporter HYD28_RS04295 PF00571 CBS domain HYD28_RS04300 PF00381 PTS HPr component phosphorylation site HYD28_RS04310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HYD28_RS04315 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HYD28_RS04320 PF04552 Sigma-54, DNA binding domain HYD28_RS04320 PF04963 Sigma-54 factor, core binding domain HYD28_RS04320 PF00309 Sigma-54 factor, Activator interacting domain (AID) HYD28_RS04325 PF00005 ABC transporter HYD28_RS04325 PF12399 Branched-chain amino acid ATP-binding cassette transporter HYD28_RS04345 PF01380 SIS domain HYD28_RS04345 PF00571 CBS domain HYD28_RS04350 PF01699 Sodium/calcium exchanger protein HYD28_RS04355 PF00005 ABC transporter HYD28_RS04360 PF02405 Permease MlaE HYD28_RS04365 PF02470 MlaD protein HYD28_RS04370 PF05494 MlaC protein HYD28_RS04375 PF13466 STAS domain HYD28_RS04380 PF01722 BolA-like protein HYD28_RS04390 PF13180 PDZ domain HYD28_RS04395 PF13180 PDZ domain HYD28_RS04395 PF00595 PDZ domain HYD28_RS04405 PF03969 AFG1-like ATPase HYD28_RS04415 PF00380 Ribosomal protein S9/S16 HYD28_RS04430 PF01679 Proteolipid membrane potential modulator HYD28_RS04440 PF02743 Cache domain HYD28_RS04440 PF00672 HAMP domain HYD28_RS04440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS04445 PF01370 NAD dependent epimerase/dehydratase family HYD28_RS04450 PF00392 Bacterial regulatory proteins, gntR family HYD28_RS04450 PF07702 UTRA domain HYD28_RS04460 PF00563 EAL domain HYD28_RS04460 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS04460 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS04475 PF01569 PAP2 superfamily HYD28_RS04485 PF12729 Four helix bundle sensory module for signal transduction HYD28_RS04485 PF00672 HAMP domain HYD28_RS04485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS04510 PF00270 DEAD/DEAH box helicase HYD28_RS04510 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HYD28_RS04510 PF18074 Primosomal protein N C-terminal domain HYD28_RS04510 PF00271 Helicase conserved C-terminal domain HYD28_RS04510 PF17764 3′ DNA-binding domain (3′BD) HYD28_RS04520 PF03949 Malic enzyme, NAD binding domain HYD28_RS04520 PF00390 Malic enzyme, N-terminal domain HYD28_RS04530 PF01053 Cys/Met metabolism PLP-dependent enzyme HYD28_RS04535 PF00696 Amino acid kinase family HYD28_RS04535 PF03447 Homoserine dehydrogenase, NAD binding domain HYD28_RS04535 PF00742 Homoserine dehydrogenase HYD28_RS04565 PF07660 Secretin and TonB N terminus short domain HYD28_RS04565 PF03958 Bacterial type II/III secretion system short domain HYD28_RS04565 PF11741 AMIN domain HYD28_RS04565 PF00263 Bacterial type II and III secretion system protein HYD28_RS04585 PF02086 D12 class N6 adenine-specific DNA methyltransferase HYD28_RS04600 PF00834 Ribulose-phosphate 3 epimerase family HYD28_RS04605 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS04610 PF00579 tRNA synthetases class I (W and Y) HYD28_RS04635 PF17760 UvrA interaction domain HYD28_RS04635 PF17755 UvrA DNA-binding domain HYD28_RS04635 PF00005 ABC transporter HYD28_RS04640 PF07690 Major Facilitator Superfamily HYD28_RS04645 PF00436 Single-strand binding protein family HYD28_RS04650 PF00563 EAL domain HYD28_RS04650 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS04650 PF00498 FHA domain HYD28_RS04655 PF00291 Pyridoxal-phosphate dependent enzyme HYD28_RS04670 PF04085 rod shape-determining protein MreC HYD28_RS04675 PF04093 rod shape-determining protein MreD HYD28_RS04685 PF00575 S1 RNA binding domain HYD28_RS04685 PF10150 Ribonuclease E/G family HYD28_RS04690 PF13502 AsmA-like C-terminal region HYD28_RS04690 PF13116 Protein of unknown function HYD28_RS04695 PF00795 Carbon-nitrogen hydrolase HYD28_RS04700 PF01523 Putative modulator of DNA gyrase HYD28_RS04715 PF12833 Helix-turn-helix domain HYD28_RS04715 PF00072 Response regulator receiver domain HYD28_RS04720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYD28_RS04720 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYD28_RS04725 PF01432 Peptidase family M3 HYD28_RS04730 PF00072 Response regulator receiver domain HYD28_RS04740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS04745 PF08534 Redoxin HYD28_RS04750 PF04151 Bacterial pre-peptidase C-terminal domain HYD28_RS04750 PF00082 Subtilase family HYD28_RS04760 PF00563 EAL domain HYD28_RS04760 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS04760 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS04760 PF13188 PAS domain HYD28_RS04765 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS04765 PF00072 Response regulator receiver domain HYD28_RS04770 PF00141 Peroxidase HYD28_RS04775 PF00326 Prolyl oligopeptidase family HYD28_RS04775 PF07676 WD40-like Beta Propeller Repeat HYD28_RS04780 PF00440 Bacterial regulatory proteins, tetR family HYD28_RS04785 PF04127 DNA / pantothenate metabolism flavoprotein HYD28_RS04785 PF02441 Flavoprotein HYD28_RS04795 PF00830 Ribosomal L28 family HYD28_RS04810 PF00436 Single-strand binding protein family HYD28_RS04825 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS04825 PF00114 Pilin (bacterial filament) HYD28_RS04830 PF00114 Pilin (bacterial filament) HYD28_RS04830 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS04865 PF03796 DnaB-like helicase C terminal domain HYD28_RS04865 PF00772 DnaB-like helicase N terminal domain HYD28_RS04905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS04910 PF00873 AcrB/AcrD/AcrF family HYD28_RS04915 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS04915 PF00672 HAMP domain HYD28_RS04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS04920 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS04920 PF00072 Response regulator receiver domain HYD28_RS04925 PF06629 MltA-interacting protein MipA HYD28_RS04930 PF01544 CorA-like Mg2+ transporter protein HYD28_RS04935 PF18030 RimK PreATP-grasp domain HYD28_RS04935 PF08443 RimK-like ATP-grasp domain HYD28_RS04965 PF16124 RecQ zinc-binding HYD28_RS04965 PF00271 Helicase conserved C-terminal domain HYD28_RS04965 PF09382 RQC domain HYD28_RS04965 PF00570 HRDC domain HYD28_RS04965 PF00270 DEAD/DEAH box helicase HYD28_RS04970 PF00892 EamA-like transporter family HYD28_RS04975 PF00072 Response regulator receiver domain HYD28_RS04975 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS04985 PF03466 LysR substrate binding domain HYD28_RS04985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS04990 PF00267 Gram-negative porin HYD28_RS04995 PF00270 DEAD/DEAH box helicase HYD28_RS04995 PF17191 RecG wedge domain HYD28_RS04995 PF00271 Helicase conserved C-terminal domain HYD28_RS05000 PF12105 SpoU, rRNA methylase, C-terminal HYD28_RS05000 PF00588 SpoU rRNA Methylase family HYD28_RS05005 PF01037 Lrp/AsnC ligand binding domain HYD28_RS05010 PF03590 Aspartate-ammonia ligase HYD28_RS05020 PF01042 Endoribonuclease L-PSP HYD28_RS05025 PF02824 TGS domain HYD28_RS05025 PF04607 Region found in RelA / SpoT proteins HYD28_RS05025 PF13291 ACT domain HYD28_RS05040 PF08340 Domain of unknown function (DUF1732) HYD28_RS05040 PF03755 YicC-like family, N-terminal region HYD28_RS05075 PF13180 PDZ domain HYD28_RS05075 PF03572 Peptidase family S41 HYD28_RS05080 PF01551 Peptidase family M23 HYD28_RS05090 PF00581 Rhodanese-like domain HYD28_RS05095 PF00462 Glutaredoxin HYD28_RS05110 PF00563 EAL domain HYD28_RS05110 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS05110 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS05115 PF00588 SpoU rRNA Methylase family HYD28_RS05120 PF16916 Dimerisation domain of Zinc Transporter HYD28_RS05120 PF01545 Cation efflux family HYD28_RS05125 PF12146 Serine aminopeptidase, S33 HYD28_RS05130 PF16527 Two-component sensor protein CpxA, periplasmic domain HYD28_RS05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS05130 PF00672 HAMP domain HYD28_RS05130 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS05135 PF00072 Response regulator receiver domain HYD28_RS05135 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS05150 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HYD28_RS05150 PF00437 Type II/IV secretion system protein HYD28_RS05160 PF01478 Type IV leader peptidase family HYD28_RS05160 PF06750 Bacterial Peptidase A24 N-terminal domain HYD28_RS05165 PF00482 Type II secretion system (T2SS), protein F HYD28_RS05170 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS05170 PF00114 Pilin (bacterial filament) HYD28_RS05175 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HYD28_RS05175 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HYD28_RS05180 PF01510 N-acetylmuramoyl-L-alanine amidase HYD28_RS05185 PF03186 CobD/Cbib protein HYD28_RS05190 PF07729 FCD domain HYD28_RS05190 PF00392 Bacterial regulatory proteins, gntR family HYD28_RS05195 PF17831 Pyruvate dehydrogenase E1 component middle domain HYD28_RS05195 PF00456 Transketolase, thiamine diphosphate binding domain HYD28_RS05200 PF02817 e3 binding domain HYD28_RS05200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HYD28_RS05200 PF00364 Biotin-requiring enzyme HYD28_RS05205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYD28_RS05205 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYD28_RS05215 PF13416 Bacterial extracellular solute-binding protein HYD28_RS05225 PF08402 TOBE domain HYD28_RS05225 PF00005 ABC transporter HYD28_RS05235 PF02863 Arginine repressor, C-terminal domain HYD28_RS05235 PF01316 Arginine repressor, DNA binding domain HYD28_RS05245 PF00348 Polyprenyl synthetase HYD28_RS05265 PF00186 Dihydrofolate reductase HYD28_RS05275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS05275 PF00672 HAMP domain HYD28_RS05275 PF02743 Cache domain HYD28_RS05280 PF00149 Calcineurin-like phosphoesterase HYD28_RS05285 PF04379 ApaG domain HYD28_RS05310 PF01636 Phosphotransferase enzyme family HYD28_RS05315 PF00483 Nucleotidyl transferase HYD28_RS05320 PF00226 DnaJ domain HYD28_RS05320 PF05099 Tellurite resistance protein TerB HYD28_RS05330 PF00849 RNA pseudouridylate synthase HYD28_RS05340 PF00271 Helicase conserved C-terminal domain HYD28_RS05340 PF12137 RNA polymerase recycling family C-terminal HYD28_RS05340 PF00176 SNF2 family N-terminal domain HYD28_RS05340 PF18339 RapA N-terminal Tudor like domain 1 HYD28_RS05340 PF18337 RapA N-terminal Tudor like domain HYD28_RS05345 PF02562 PhoH-like protein HYD28_RS05345 PF13638 PIN domain HYD28_RS05350 PF13638 PIN domain HYD28_RS05350 PF02562 PhoH-like protein HYD28_RS05390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS05395 PF00873 AcrB/AcrD/AcrF family HYD28_RS05405 PF00175 Oxidoreductase NAD-binding domain HYD28_RS05405 PF00111 2Fe-2S iron-sulfur cluster binding domain HYD28_RS05405 PF00970 Oxidoreductase FAD-binding domain HYD28_RS05425 PF07732 Multicopper oxidase HYD28_RS05425 PF00394 Multicopper oxidase HYD28_RS05425 PF07731 Multicopper oxidase HYD28_RS05430 PF05275 Copper resistance protein B precursor (CopB) HYD28_RS05440 PF13411 MerR HTH family regulatory protein HYD28_RS05445 PF00403 Heavy-metal-associated domain HYD28_RS05495 PF13411 MerR HTH family regulatory protein HYD28_RS05505 PF16916 Dimerisation domain of Zinc Transporter HYD28_RS05505 PF01545 Cation efflux family HYD28_RS05510 PF00873 AcrB/AcrD/AcrF family HYD28_RS05555 PF02659 Putative manganese efflux pump HYD28_RS05560 PF03203 MerC mercury resistance protein HYD28_RS05565 PF00376 MerR family regulatory protein HYD28_RS05565 PF09278 MerR, DNA binding HYD28_RS05595 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS05595 PF00672 HAMP domain HYD28_RS05595 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS05595 PF00072 Response regulator receiver domain HYD28_RS05595 PF01627 Hpt domain HYD28_RS05600 PF00072 Response regulator receiver domain HYD28_RS05610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HYD28_RS05610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HYD28_RS05615 PF13411 MerR HTH family regulatory protein HYD28_RS05630 PF06945 Protein of unknown function (DUF1289) HYD28_RS05650 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS05650 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS05650 PF00563 EAL domain HYD28_RS05655 PF00027 Cyclic nucleotide-binding domain HYD28_RS05655 PF00520 Ion transport protein HYD28_RS05660 PF13607 Succinyl-CoA ligase like flavodoxin domain HYD28_RS05660 PF00583 Acetyltransferase (GNAT) family HYD28_RS05660 PF13380 CoA binding domain HYD28_RS05685 PF06969 HemN C-terminal domain HYD28_RS05685 PF04055 Radical SAM superfamily HYD28_RS05690 PF01725 Ham1 family HYD28_RS05700 PF02325 YGGT family HYD28_RS05705 PF14748 Pyrroline-5-carboxylate reductase dimerisation HYD28_RS05705 PF03807 NADP oxidoreductase coenzyme F420-dependent HYD28_RS05710 PF01168 Alanine racemase, N-terminal domain HYD28_RS05715 PF00437 Type II/IV secretion system protein HYD28_RS05720 PF00437 Type II/IV secretion system protein HYD28_RS05740 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HYD28_RS05740 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HYD28_RS05745 PF04452 RNA methyltransferase HYD28_RS05760 PF08335 GlnD PII-uridylyltransferase HYD28_RS05760 PF03710 Glutamate-ammonia ligase adenylyltransferase HYD28_RS05770 PF03279 Bacterial lipid A biosynthesis acyltransferase HYD28_RS05775 PF02321 Outer membrane efflux protein HYD28_RS05780 PF00293 NUDIX domain HYD28_RS05785 PF06853 Protein of unknown function (DUF1249) HYD28_RS05790 PF00149 Calcineurin-like phosphoesterase HYD28_RS05795 PF05728 Uncharacterised protein family (UPF0227) HYD28_RS05800 PF00204 DNA gyrase B HYD28_RS05800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS05800 PF01751 Toprim domain HYD28_RS05800 PF00986 DNA gyrase B subunit, carboxyl terminus HYD28_RS05805 PF07995 Glucose / Sorbosone dehydrogenase HYD28_RS05810 PF03989 DNA gyrase C-terminal domain, beta-propeller HYD28_RS05810 PF00521 DNA gyrase/topoisomerase IV, subunit A HYD28_RS05815 PF17945 Beta/Gamma crystallin HYD28_RS05815 PF12561 ToxR activated gene A lipoprotein domain HYD28_RS05820 PF01553 Acyltransferase HYD28_RS05830 PF01966 HD domain HYD28_RS05830 PF11871 Domain of unknown function (DUF3391) HYD28_RS05840 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HYD28_RS05850 PF04364 DNA polymerase III chi subunit, HolC HYD28_RS05855 PF00883 Cytosol aminopeptidase family, catalytic domain HYD28_RS05855 PF02789 Cytosol aminopeptidase family, N-terminal domain HYD28_RS05860 PF03739 Lipopolysaccharide export system permease LptF/LptG HYD28_RS05865 PF03739 Lipopolysaccharide export system permease LptF/LptG HYD28_RS05875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HYD28_RS05875 PF02770 Acyl-CoA dehydrogenase, middle domain HYD28_RS05875 PF18158 Adaptive response protein AidB N-terminal domain HYD28_RS05885 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS05885 PF00563 EAL domain HYD28_RS05885 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS05885 PF13188 PAS domain HYD28_RS05900 PF07690 Major Facilitator Superfamily HYD28_RS05905 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS05905 PF00593 TonB dependent receptor HYD28_RS05930 PF00171 Aldehyde dehydrogenase family HYD28_RS05935 PF03060 Nitronate monooxygenase HYD28_RS05950 PF13344 Haloacid dehalogenase-like hydrolase HYD28_RS05950 PF00293 NUDIX domain HYD28_RS05955 PF00158 Sigma-54 interaction domain HYD28_RS05955 PF02954 Bacterial regulatory protein, Fis family HYD28_RS05955 PF00072 Response regulator receiver domain HYD28_RS05965 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS05965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS05965 PF01590 GAF domain HYD28_RS05965 PF00360 Phytochrome region HYD28_RS05965 PF08446 PAS fold HYD28_RS05970 PF00072 Response regulator receiver domain HYD28_RS05975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS05975 PF00072 Response regulator receiver domain HYD28_RS05975 PF09308 LuxQ, periplasmic HYD28_RS05975 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS05980 PF00356 Bacterial regulatory proteins, lacI family HYD28_RS05990 PF00232 Glycosyl hydrolase family 1 HYD28_RS05995 PF07690 Major Facilitator Superfamily HYD28_RS06000 PF14310 Fibronectin type III-like domain HYD28_RS06000 PF01915 Glycosyl hydrolase family 3 C-terminal domain HYD28_RS06000 PF00933 Glycosyl hydrolase family 3 N terminal domain HYD28_RS06005 PF00722 Glycosyl hydrolases family 16 HYD28_RS06020 PF04820 Tryptophan halogenase HYD28_RS06030 PF01557 Fumarylacetoacetate (FAA) hydrolase family HYD28_RS06045 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYD28_RS06050 PF01758 Sodium Bile acid symporter family HYD28_RS06055 PF01370 NAD dependent epimerase/dehydratase family HYD28_RS06075 PF00248 Aldo/keto reductase family HYD28_RS06095 PF02554 Carbon starvation protein CstA HYD28_RS06095 PF13722 5TM C-terminal transporter carbon starvation CstA HYD28_RS06100 PF00883 Cytosol aminopeptidase family, catalytic domain HYD28_RS06105 PF00672 HAMP domain HYD28_RS06105 PF17200 Single Cache domain 2 HYD28_RS06105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS06110 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region HYD28_RS06110 PF00326 Prolyl oligopeptidase family HYD28_RS06140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS06140 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS06140 PF00989 PAS fold HYD28_RS06140 PF08447 PAS fold HYD28_RS06145 PF00072 Response regulator receiver domain HYD28_RS06150 PF00696 Amino acid kinase family HYD28_RS06150 PF03447 Homoserine dehydrogenase, NAD binding domain HYD28_RS06150 PF00742 Homoserine dehydrogenase HYD28_RS06150 PF13840 ACT domain HYD28_RS06150 PF01842 ACT domain HYD28_RS06155 PF08544 GHMP kinases C terminal HYD28_RS06155 PF00288 GHMP kinases N terminal domain HYD28_RS06160 PF14821 Threonine synthase N terminus HYD28_RS06160 PF00291 Pyridoxal-phosphate dependent enzyme HYD28_RS06180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HYD28_RS06180 PF01872 RibD C-terminal domain HYD28_RS06185 PF00677 Lumazine binding domain HYD28_RS06190 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HYD28_RS06190 PF00925 GTP cyclohydrolase II HYD28_RS06205 PF02769 AIR synthase related protein, C-terminal domain HYD28_RS06205 PF00586 AIR synthase related protein, N-terminal domain HYD28_RS06210 PF04608 Phosphatidylglycerophosphatase A HYD28_RS06215 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS06225 PF00348 Polyprenyl synthetase HYD28_RS06235 PF01618 MotA/TolQ/ExbB proton channel family HYD28_RS06240 PF00691 OmpA family HYD28_RS06240 PF13677 Membrane MotB of proton-channel complex MotA/MotB HYD28_RS06250 PF01131 DNA topoisomerase HYD28_RS06250 PF01751 Toprim domain HYD28_RS06255 PF01546 Peptidase family M20/M25/M40 HYD28_RS06255 PF07687 Peptidase dimerisation domain HYD28_RS06260 PF00085 Thioredoxin HYD28_RS06285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYD28_RS06285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HYD28_RS06290 PF00300 Histidine phosphatase superfamily (branch 1) HYD28_RS06295 PF00005 ABC transporter HYD28_RS06300 PF01032 FecCD transport family HYD28_RS06310 PF02654 Cobalamin-5-phosphate synthase HYD28_RS06315 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HYD28_RS06325 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HYD28_RS06325 PF12557 Cob(I)alamin adenosyltransferase N terminal HYD28_RS06330 PF01497 Periplasmic binding protein HYD28_RS06345 PF00923 Transaldolase/Fructose-6-phosphate aldolase HYD28_RS06355 PF00924 Mechanosensitive ion channel HYD28_RS06360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HYD28_RS06360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HYD28_RS06365 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HYD28_RS06370 PF01812 5-formyltetrahydrofolate cyclo-ligase family HYD28_RS06385 PF00072 Response regulator receiver domain HYD28_RS06385 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS06390 PF00543 Nitrogen regulatory protein P-II HYD28_RS06395 PF00909 Ammonium Transporter Family HYD28_RS06405 PF00912 Transglycosylase HYD28_RS06405 PF00905 Penicillin binding protein transpeptidase domain HYD28_RS06405 PF14814 Bifunctional transglycosylase second domain HYD28_RS06410 PF00593 TonB dependent receptor HYD28_RS06420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HYD28_RS06420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HYD28_RS06440 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS06440 PF00563 EAL domain HYD28_RS06440 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS06440 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS06440 PF00563 EAL domain HYD28_RS06440 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS06460 PF07690 Major Facilitator Superfamily HYD28_RS06465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HYD28_RS06485 PF01722 BolA-like protein HYD28_RS06500 PF03116 NQR2, RnfD, RnfE family HYD28_RS06505 PF04205 FMN-binding domain HYD28_RS06520 PF00111 2Fe-2S iron-sulfur cluster binding domain HYD28_RS06520 PF00970 Oxidoreductase FAD-binding domain HYD28_RS06520 PF00175 Oxidoreductase NAD-binding domain HYD28_RS06525 PF02424 ApbE family HYD28_RS06550 PF06481 COX Aromatic Rich Motif HYD28_RS06550 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HYD28_RS06555 PF00115 Cytochrome C and Quinol oxidase polypeptide I HYD28_RS06560 PF00510 Cytochrome c oxidase subunit III HYD28_RS06565 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HYD28_RS06575 PF00850 Histone deacetylase domain HYD28_RS06580 PF07238 PilZ domain HYD28_RS06585 PF00005 ABC transporter HYD28_RS06585 PF12848 ABC transporter HYD28_RS06595 PF02574 Homocysteine S-methyltransferase HYD28_RS06595 PF00809 Pterin binding enzyme HYD28_RS06595 PF02965 Vitamin B12 dependent methionine synthase, activation domain HYD28_RS06595 PF02607 B12 binding domain HYD28_RS06595 PF02310 B12 binding domain HYD28_RS06600 PF02310 B12 binding domain HYD28_RS06600 PF02574 Homocysteine S-methyltransferase HYD28_RS06600 PF02965 Vitamin B12 dependent methionine synthase, activation domain HYD28_RS06600 PF02607 B12 binding domain HYD28_RS06600 PF00809 Pterin binding enzyme HYD28_RS06605 PF08448 PAS fold HYD28_RS06605 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS06610 PF05532 CsbD-like HYD28_RS06620 PF00270 DEAD/DEAH box helicase HYD28_RS06620 PF04408 Helicase associated domain (HA2) HYD28_RS06620 PF08482 ATP-dependent helicase C-terminal HYD28_RS06620 PF00271 Helicase conserved C-terminal domain HYD28_RS06630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HYD28_RS06635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS06635 PF03466 LysR substrate binding domain HYD28_RS06640 PF07690 Major Facilitator Superfamily HYD28_RS06660 PF01738 Dienelactone hydrolase family HYD28_RS06680 PF04616 Glycosyl hydrolases family 43 HYD28_RS06695 PF05552 Conserved TM helix HYD28_RS06695 PF00924 Mechanosensitive ion channel HYD28_RS06700 PF04172 LrgB-like family HYD28_RS06705 PF03788 LrgA family HYD28_RS06710 PF00378 Enoyl-CoA hydratase/isomerase HYD28_RS06710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HYD28_RS06710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HYD28_RS06715 PF00529 HlyD membrane-fusion protein of T1SS HYD28_RS06715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS06720 PF00873 AcrB/AcrD/AcrF family HYD28_RS06725 PF04269 Protein of unknown function, DUF440 HYD28_RS06740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYD28_RS06750 PF03937 Flavinator of succinate dehydrogenase HYD28_RS06760 PF00890 FAD binding domain HYD28_RS06760 PF02910 Fumarate reductase flavoprotein C-term HYD28_RS06765 PF08281 Sigma-70, region 4 HYD28_RS06765 PF04542 Sigma-70 region 2 HYD28_RS06775 PF17188 MucB/RseB C-terminal domain HYD28_RS06775 PF03888 MucB/RseB N-terminal domain HYD28_RS06790 PF10502 Signal peptidase, peptidase S26 HYD28_RS06800 PF07650 KH domain HYD28_RS06800 PF01926 50S ribosome-binding GTPase HYD28_RS06825 PF01627 Hpt domain HYD28_RS06825 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS06825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS06825 PF00672 HAMP domain HYD28_RS06825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS06825 PF00072 Response regulator receiver domain HYD28_RS06835 PF02824 TGS domain HYD28_RS06835 PF04607 Region found in RelA / SpoT proteins HYD28_RS06835 PF13291 ACT domain HYD28_RS06840 PF03819 MazG nucleotide pyrophosphohydrolase domain HYD28_RS06855 PF02976 DNA mismatch repair enzyme MutH HYD28_RS06865 PF02896 PEP-utilising enzyme, TIM barrel domain HYD28_RS06865 PF00391 PEP-utilising enzyme, mobile domain HYD28_RS06865 PF05524 PEP-utilising enzyme, N-terminal HYD28_RS06865 PF01590 GAF domain HYD28_RS06870 PF01925 Sulfite exporter TauE/SafE HYD28_RS06885 PF00483 Nucleotidyl transferase HYD28_RS06920 PF08240 Alcohol dehydrogenase GroES-like domain HYD28_RS06920 PF00107 Zinc-binding dehydrogenase HYD28_RS06925 PF03600 Citrate transporter HYD28_RS06930 PF08534 Redoxin HYD28_RS06930 PF00462 Glutaredoxin HYD28_RS06935 PF03466 LysR substrate binding domain HYD28_RS06935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS06960 PF13144 Chaperone for flagella basal body P-ring formation HYD28_RS06965 PF01584 CheW-like domain HYD28_RS06965 PF00072 Response regulator receiver domain HYD28_RS06970 PF03705 CheR methyltransferase, all-alpha domain HYD28_RS06970 PF01739 CheR methyltransferase, SAM binding domain HYD28_RS06975 PF00460 Flagella basal body rod protein HYD28_RS06980 PF00460 Flagella basal body rod protein HYD28_RS06980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYD28_RS06990 PF00460 Flagella basal body rod protein HYD28_RS06990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYD28_RS06990 PF07559 Flagellar basal body protein FlaE HYD28_RS06995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYD28_RS06995 PF00460 Flagella basal body rod protein HYD28_RS07015 PF10135 Rod binding protein HYD28_RS07015 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HYD28_RS07020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYD28_RS07020 PF07196 Flagellin hook IN motif HYD28_RS07030 PF00669 Bacterial flagellin N-terminal helical region HYD28_RS07030 PF00700 Bacterial flagellin C-terminal helical region HYD28_RS07030 PF07196 Flagellin hook IN motif HYD28_RS07035 PF00700 Bacterial flagellin C-terminal helical region HYD28_RS07035 PF00669 Bacterial flagellin N-terminal helical region HYD28_RS07040 PF07196 Flagellin hook IN motif HYD28_RS07040 PF00700 Bacterial flagellin C-terminal helical region HYD28_RS07040 PF00669 Bacterial flagellin N-terminal helical region HYD28_RS07050 PF07196 Flagellin hook IN motif HYD28_RS07050 PF07195 Flagellar hook-associated protein 2 C-terminus HYD28_RS07050 PF02465 Flagellar hook-associated protein 2 N-terminus HYD28_RS07055 PF02561 Flagellar protein FliS HYD28_RS07070 PF02719 Polysaccharide biosynthesis protein HYD28_RS07075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HYD28_RS07085 PF03275 UDP-galactopyranose mutase HYD28_RS07095 PF02350 UDP-N-acetylglucosamine 2-epimerase HYD28_RS07100 PF03102 NeuB family HYD28_RS07100 PF08666 SAF domain HYD28_RS07120 PF00483 Nucleotidyl transferase HYD28_RS07130 PF02348 Cytidylyltransferase HYD28_RS07140 PF00669 Bacterial flagellin N-terminal helical region HYD28_RS07140 PF00700 Bacterial flagellin C-terminal helical region HYD28_RS07145 PF00158 Sigma-54 interaction domain HYD28_RS07145 PF06490 Flagellar regulatory protein FleQ HYD28_RS07145 PF02954 Bacterial regulatory protein, Fis family HYD28_RS07150 PF00958 GMP synthase C terminal domain HYD28_RS07150 PF00117 Glutamine amidotransferase class-I HYD28_RS07150 PF13673 Acetyltransferase (GNAT) domain HYD28_RS07150 PF03352 Methyladenine glycosylase HYD28_RS07150 PF13302 Acetyltransferase (GNAT) domain HYD28_RS07155 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS07155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS07155 PF00989 PAS fold HYD28_RS07160 PF00072 Response regulator receiver domain HYD28_RS07160 PF00158 Sigma-54 interaction domain HYD28_RS07160 PF02954 Bacterial regulatory protein, Fis family HYD28_RS07165 PF02049 Flagellar hook-basal body complex protein FliE HYD28_RS07170 PF01514 Secretory protein of YscJ/FliF family HYD28_RS07170 PF08345 Flagellar M-ring protein C-terminal HYD28_RS07175 PF14842 FliG N-terminal domain HYD28_RS07175 PF01706 FliG C-terminal domain HYD28_RS07175 PF14841 FliG middle domain HYD28_RS07185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HYD28_RS07185 PF18269 T3SS EscN ATPase C-terminal domain HYD28_RS07195 PF02120 Flagellar hook-length control protein FliK HYD28_RS07205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HYD28_RS07205 PF02154 Flagellar motor switch protein FliM HYD28_RS07210 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HYD28_RS07215 PF04347 Flagellar biosynthesis protein, FliO HYD28_RS07220 PF00813 FliP family HYD28_RS07225 PF01313 Bacterial export proteins, family 3 HYD28_RS07230 PF01311 Bacterial export proteins, family 1 HYD28_RS07235 PF01312 FlhB HrpN YscU SpaS Family HYD28_RS07240 PF00771 FHIPEP family HYD28_RS07245 PF00448 SRP54-type protein, GTPase domain HYD28_RS07250 PF10609 NUBPL iron-transfer P-loop NTPase HYD28_RS07255 PF04539 Sigma-70 region 3 HYD28_RS07255 PF04542 Sigma-70 region 2 HYD28_RS07255 PF04545 Sigma-70, region 4 HYD28_RS07260 PF00072 Response regulator receiver domain HYD28_RS07265 PF04344 Chemotaxis phosphatase, CheZ HYD28_RS07270 PF00072 Response regulator receiver domain HYD28_RS07270 PF02895 Signal transducing histidine kinase, homodimeric domain HYD28_RS07270 PF01627 Hpt domain HYD28_RS07270 PF01584 CheW-like domain HYD28_RS07270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS07280 PF01618 MotA/TolQ/ExbB proton channel family HYD28_RS07285 PF13677 Membrane MotB of proton-channel complex MotA/MotB HYD28_RS07285 PF00691 OmpA family HYD28_RS07290 PF13614 AAA domain HYD28_RS07300 PF01584 CheW-like domain HYD28_RS07320 PF00005 ABC transporter HYD28_RS07325 PF03379 CcmB protein HYD28_RS07330 PF01578 Cytochrome C assembly protein HYD28_RS07335 PF04995 Heme exporter protein D (CcmD) HYD28_RS07345 PF01578 Cytochrome C assembly protein HYD28_RS07345 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HYD28_RS07350 PF08534 Redoxin HYD28_RS07355 PF03918 Cytochrome C biogenesis protein HYD28_RS07365 PF04333 MlaA lipoprotein HYD28_RS07370 PF00563 EAL domain HYD28_RS07370 PF08668 HDOD domain HYD28_RS07375 PF00474 Sodium:solute symporter family HYD28_RS07380 PF07130 YebG protein HYD28_RS07400 PF00800 Prephenate dehydratase HYD28_RS07400 PF01817 Chorismate mutase type II HYD28_RS07405 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS07405 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS07405 PF00563 EAL domain HYD28_RS07410 PF01253 Translation initiation factor SUI1 HYD28_RS07420 PF00072 Response regulator receiver domain HYD28_RS07420 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS07430 PF00155 Aminotransferase class I and II HYD28_RS07440 PF08281 Sigma-70, region 4 HYD28_RS07440 PF04542 Sigma-70 region 2 HYD28_RS07450 PF13519 von Willebrand factor type A domain HYD28_RS07450 PF07584 Aerotolerance regulator N-terminal HYD28_RS07455 PF07584 Aerotolerance regulator N-terminal HYD28_RS07455 PF13519 von Willebrand factor type A domain HYD28_RS07465 PF01882 Protein of unknown function DUF58 HYD28_RS07470 PF07726 ATPase family associated with various cellular activities (AAA) HYD28_RS07470 PF17863 AAA lid domain HYD28_RS07480 PF00378 Enoyl-CoA hydratase/isomerase HYD28_RS07480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HYD28_RS07480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HYD28_RS07490 PF04237 YjbR HYD28_RS07520 PF07726 ATPase family associated with various cellular activities (AAA) HYD28_RS07520 PF17863 AAA lid domain HYD28_RS07540 PF00675 Insulinase (Peptidase family M16) HYD28_RS07540 PF05193 Peptidase M16 inactive domain HYD28_RS07545 PF00300 Histidine phosphatase superfamily (branch 1) HYD28_RS07550 PF01042 Endoribonuclease L-PSP HYD28_RS07575 PF05175 Methyltransferase small domain HYD28_RS07595 PF03466 LysR substrate binding domain HYD28_RS07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS07605 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS07605 PF00072 Response regulator receiver domain HYD28_RS07620 PF04315 Elongation factor P hydroxylase HYD28_RS07630 PF08891 YfcL protein HYD28_RS07635 PF03806 AbgT putative transporter family HYD28_RS07640 PF00271 Helicase conserved C-terminal domain HYD28_RS07640 PF03880 DbpA RNA binding domain HYD28_RS07640 PF00270 DEAD/DEAH box helicase HYD28_RS07640 PF12343 Cold shock protein DEAD box A HYD28_RS07645 PF00462 Glutaredoxin HYD28_RS07655 PF00011 Hsp20/alpha crystallin family HYD28_RS07660 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HYD28_RS07680 PF08529 NusA N-terminal domain HYD28_RS07680 PF13184 NusA-like KH domain HYD28_RS07680 PF00575 S1 RNA binding domain HYD28_RS07710 PF07719 Tetratricopeptide repeat HYD28_RS07710 PF13181 Tetratricopeptide repeat HYD28_RS07720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HYD28_RS07720 PF00361 Proton-conducting membrane transporter HYD28_RS07720 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HYD28_RS07720 PF13244 Domain of unknown function (DUF4040) HYD28_RS07725 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HYD28_RS07730 PF00361 Proton-conducting membrane transporter HYD28_RS07740 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HYD28_RS07760 PF08245 Mur ligase middle domain HYD28_RS07760 PF02875 Mur ligase family, glutamate ligase domain HYD28_RS07770 PF02674 Colicin V production protein HYD28_RS07775 PF00156 Phosphoribosyl transferase domain HYD28_RS07785 PF00924 Mechanosensitive ion channel HYD28_RS07790 PF00593 TonB dependent receptor HYD28_RS07790 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS07800 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS07810 PF00012 Hsp70 protein HYD28_RS07820 PF01810 LysE type translocator HYD28_RS07825 PF05922 Peptidase inhibitor I9 HYD28_RS07825 PF00082 Subtilase family HYD28_RS07830 PF07690 Major Facilitator Superfamily HYD28_RS07845 PF01551 Peptidase family M23 HYD28_RS07850 PF01557 Fumarylacetoacetate (FAA) hydrolase family HYD28_RS07855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HYD28_RS07865 PF00854 POT family HYD28_RS07870 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HYD28_RS07875 PF01270 Glycosyl hydrolases family 8 HYD28_RS07880 PF03170 Bacterial cellulose synthase subunit HYD28_RS07885 PF07238 PilZ domain HYD28_RS07885 PF00535 Glycosyl transferase family 2 HYD28_RS07885 PF03552 Cellulose synthase HYD28_RS07905 PF11658 Cellulose biosynthesis protein BcsG HYD28_RS07910 PF00158 Sigma-54 interaction domain HYD28_RS07910 PF18024 Helix-turn-helix domain HYD28_RS07970 PF03922 OmpW family HYD28_RS07975 PF01554 MatE HYD28_RS07980 PF01546 Peptidase family M20/M25/M40 HYD28_RS07980 PF07687 Peptidase dimerisation domain HYD28_RS07990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HYD28_RS08010 PF00072 Response regulator receiver domain HYD28_RS08020 PF03023 Lipid II flippase MurJ HYD28_RS08025 PF06574 FAD synthetase HYD28_RS08025 PF01687 Riboflavin kinase HYD28_RS08040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYD28_RS08050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS08050 PF06580 Histidine kinase HYD28_RS08055 PF04397 LytTr DNA-binding domain HYD28_RS08055 PF00072 Response regulator receiver domain HYD28_RS08085 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS08085 PF00114 Pilin (bacterial filament) HYD28_RS08095 PF00114 Pilin (bacterial filament) HYD28_RS08095 PF07963 Prokaryotic N-terminal methylation motif HYD28_RS08100 PF00543 Nitrogen regulatory protein P-II HYD28_RS08105 PF13525 Outer membrane lipoprotein HYD28_RS08110 PF01479 S4 domain HYD28_RS08110 PF00849 RNA pseudouridylate synthase HYD28_RS08120 PF17871 AAA lid domain HYD28_RS08120 PF02861 Clp amino terminal domain, pathogenicity island component HYD28_RS08120 PF00004 ATPase family associated with various cellular activities (AAA) HYD28_RS08120 PF10431 C-terminal, D2-small domain, of ClpB protein HYD28_RS08120 PF07724 AAA domain (Cdc48 subfamily) HYD28_RS08125 PF08447 PAS fold HYD28_RS08125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS08145 PF04055 Radical SAM superfamily HYD28_RS08155 PF00578 AhpC/TSA family HYD28_RS08160 PF01842 ACT domain HYD28_RS08165 PF06804 NlpB/DapX lipoprotein HYD28_RS08180 PF09411 Lipid A 3-O-deacylase (PagL) HYD28_RS08185 PF05494 MlaC protein HYD28_RS08200 PF03358 NADPH-dependent FMN reductase HYD28_RS08205 PF03960 ArsC family HYD28_RS08210 PF01435 Peptidase family M48 HYD28_RS08210 PF07720 Tetratricopeptide repeat HYD28_RS08220 PF01594 AI-2E family transporter HYD28_RS08225 PF00266 Aminotransferase class-V HYD28_RS08230 PF00356 Bacterial regulatory proteins, lacI family HYD28_RS08240 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HYD28_RS08240 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HYD28_RS08245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HYD28_RS08255 PF04820 Tryptophan halogenase HYD28_RS08270 PF01112 Asparaginase HYD28_RS08285 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HYD28_RS08315 PF00849 RNA pseudouridylate synthase HYD28_RS08315 PF04287 tRNA pseudouridine synthase C HYD28_RS08325 PF00258 Flavodoxin HYD28_RS08330 PF08032 RNA 2'-O ribose methyltransferase substrate binding HYD28_RS08330 PF00588 SpoU rRNA Methylase family HYD28_RS08335 PF06470 SMC proteins Flexible Hinge Domain HYD28_RS08335 PF02463 RecF/RecN/SMC N terminal domain HYD28_RS08340 PF04354 ZipA, C-terminal FtsZ-binding domain HYD28_RS08365 PF01641 SelR domain HYD28_RS08370 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS08370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS08370 PF00072 Response regulator receiver domain HYD28_RS08370 PF09308 LuxQ, periplasmic HYD28_RS08385 PF00072 Response regulator receiver domain HYD28_RS08470 PF00005 ABC transporter HYD28_RS08485 PF00072 Response regulator receiver domain HYD28_RS08485 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS08485 PF09308 LuxQ, periplasmic HYD28_RS08485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS08490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HYD28_RS08495 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HYD28_RS08495 PF01276 Orn/Lys/Arg decarboxylase, major domain HYD28_RS08510 PF17158 Membrane-associated sensor, integral membrane domain HYD28_RS08510 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS08515 PF00633 Helix-hairpin-helix motif HYD28_RS08515 PF00730 HhH-GPD superfamily base excision DNA repair protein HYD28_RS08515 PF10576 Iron-sulfur binding domain of endonuclease III HYD28_RS08520 PF02508 Rnf-Nqr subunit, membrane protein HYD28_RS08525 PF04205 FMN-binding domain HYD28_RS08530 PF03116 NQR2, RnfD, RnfE family HYD28_RS08535 PF13375 RnfC Barrel sandwich hybrid domain HYD28_RS08535 PF12838 4Fe-4S dicluster domain HYD28_RS08535 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYD28_RS08535 PF10531 SLBB domain HYD28_RS08540 PF04060 Putative Fe-S cluster HYD28_RS08550 PF00563 EAL domain HYD28_RS08550 PF00196 Bacterial regulatory proteins, luxR family HYD28_RS08575 PF01554 MatE HYD28_RS08585 PF10672 S-adenosylmethionine-dependent methyltransferase HYD28_RS08585 PF17785 PUA-like domain HYD28_RS08605 PF10689 Protein of unknown function (DUF2496) HYD28_RS08615 PF00850 Histone deacetylase domain HYD28_RS08625 PF01925 Sulfite exporter TauE/SafE HYD28_RS08630 PF13307 Helicase C-terminal domain HYD28_RS08630 PF06733 DEAD_2 HYD28_RS08635 PF13181 Tetratricopeptide repeat HYD28_RS08640 PF03104 DNA polymerase family B, exonuclease domain HYD28_RS08640 PF00136 DNA polymerase family B HYD28_RS08645 PF00593 TonB dependent receptor HYD28_RS08645 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS08670 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS08670 PF00593 TonB dependent receptor HYD28_RS08675 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS08675 PF00593 TonB dependent receptor HYD28_RS08685 PF09456 RcsC Alpha-Beta-Loop (ABL) HYD28_RS08685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS08685 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS08685 PF00072 Response regulator receiver domain HYD28_RS08695 PF00271 Helicase conserved C-terminal domain HYD28_RS08695 PF04851 Type III restriction enzyme, res subunit HYD28_RS08705 PF01103 Surface antigen HYD28_RS08705 PF07244 Surface antigen variable number repeat HYD28_RS08705 PF17243 POTRA domain TamA domain 1 HYD28_RS08710 PF04357 TamB, inner membrane protein subunit of TAM complex HYD28_RS08715 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HYD28_RS08720 PF00271 Helicase conserved C-terminal domain HYD28_RS08720 PF00270 DEAD/DEAH box helicase HYD28_RS08720 PF04408 Helicase associated domain (HA2) HYD28_RS08720 PF11898 Domain of unknown function (DUF3418) HYD28_RS08720 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HYD28_RS08725 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS08725 PF00072 Response regulator receiver domain HYD28_RS08740 PF01966 HD domain HYD28_RS08750 PF00072 Response regulator receiver domain HYD28_RS08755 PF01627 Hpt domain HYD28_RS08755 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS08755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS08755 PF00072 Response regulator receiver domain HYD28_RS08760 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS08760 PF00072 Response regulator receiver domain HYD28_RS08810 PF00291 Pyridoxal-phosphate dependent enzyme HYD28_RS08825 PF00196 Bacterial regulatory proteins, luxR family HYD28_RS08825 PF00072 Response regulator receiver domain HYD28_RS08835 PF01066 CDP-alcohol phosphatidyltransferase HYD28_RS08885 PF01235 Sodium:alanine symporter family HYD28_RS08910 PF00308 Bacterial dnaA protein HYD28_RS08915 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HYD28_RS08915 PF01409 tRNA synthetases class II core domain (F) HYD28_RS08935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HYD28_RS08935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HYD28_RS08940 PF00246 Zinc carboxypeptidase HYD28_RS08940 PF18027 Cytosolic carboxypeptidase N-terminal domain HYD28_RS08945 PF01235 Sodium:alanine symporter family HYD28_RS08955 PF07023 Protein of unknown function (DUF1315) HYD28_RS08965 PF07273 Protein of unknown function (DUF1439) HYD28_RS08970 PF01590 GAF domain HYD28_RS08970 PF00158 Sigma-54 interaction domain HYD28_RS08975 PF12801 4Fe-4S binding domain HYD28_RS08975 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HYD28_RS08975 PF13746 4Fe-4S dicluster domain HYD28_RS08995 PF01594 AI-2E family transporter HYD28_RS09005 PF08918 PhoQ Sensor HYD28_RS09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS09010 PF00072 Response regulator receiver domain HYD28_RS09010 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS09020 PF03795 YCII-related domain HYD28_RS09025 PF00209 Sodium:neurotransmitter symporter family HYD28_RS09035 PF04279 Intracellular septation protein A HYD28_RS09040 PF00216 Bacterial DNA-binding protein HYD28_RS09045 PF01965 DJ-1/PfpI family HYD28_RS09050 PF00290 Tryptophan synthase alpha chain HYD28_RS09055 PF00291 Pyridoxal-phosphate dependent enzyme HYD28_RS09060 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HYD28_RS09060 PF00218 Indole-3-glycerol phosphate synthase HYD28_RS09070 PF00117 Glutamine amidotransferase class-I HYD28_RS09075 PF04715 Anthranilate synthase component I, N terminal region HYD28_RS09075 PF00425 chorismate binding enzyme HYD28_RS09080 PF02811 PHP domain HYD28_RS09085 PF01300 Telomere recombination HYD28_RS09090 PF02616 Segregation and condensation protein ScpA HYD28_RS09110 PF01292 Prokaryotic cytochrome b561 HYD28_RS09115 PF04264 YceI-like domain HYD28_RS09145 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS09155 PF00180 Isocitrate/isopropylmalate dehydrogenase HYD28_RS09165 PF03466 LysR substrate binding domain HYD28_RS09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS09180 PF08240 Alcohol dehydrogenase GroES-like domain HYD28_RS09180 PF00109 Beta-ketoacyl synthase, N-terminal domain HYD28_RS09180 PF02801 Beta-ketoacyl synthase, C-terminal domain HYD28_RS09180 PF08659 KR domain HYD28_RS09180 PF09277 Erythronolide synthase, docking HYD28_RS09180 PF08990 Erythronolide synthase docking HYD28_RS09180 PF00550 Phosphopantetheine attachment site HYD28_RS09180 PF16197 Ketoacyl-synthetase C-terminal extension HYD28_RS09180 PF00698 Acyl transferase domain HYD28_RS09180 PF14765 Polyketide synthase dehydratase HYD28_RS09190 PF01381 Helix-turn-helix HYD28_RS09200 PF10502 Signal peptidase, peptidase S26 HYD28_RS09215 PF10609 NUBPL iron-transfer P-loop NTPase HYD28_RS09220 PF00722 Glycosyl hydrolases family 16 HYD28_RS09240 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS09240 PF01590 GAF domain HYD28_RS09240 PF00563 EAL domain HYD28_RS09240 PF00360 Phytochrome region HYD28_RS09260 PF00155 Aminotransferase class I and II HYD28_RS09265 PF05433 Glycine zipper 2TM domain HYD28_RS09270 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HYD28_RS09270 PF13036 Peptidoglycan-synthase activator LpoB HYD28_RS09285 PF00892 EamA-like transporter family HYD28_RS09290 PF02557 D-alanyl-D-alanine carboxypeptidase HYD28_RS09300 PF03960 ArsC family HYD28_RS09315 PF07085 DRTGG domain HYD28_RS09315 PF01515 Phosphate acetyl/butaryl transferase HYD28_RS09320 PF00871 Acetokinase family HYD28_RS09325 PF04217 Protein of unknown function, DUF412 HYD28_RS09330 PF13847 Methyltransferase domain HYD28_RS09340 PF03372 Endonuclease/Exonuclease/phosphatase family HYD28_RS09355 PF04079 Segregation and condensation complex subunit ScpB HYD28_RS09360 PF01479 S4 domain HYD28_RS09360 PF00849 RNA pseudouridylate synthase HYD28_RS09365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HYD28_RS09365 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HYD28_RS09370 PF01037 Lrp/AsnC ligand binding domain HYD28_RS09375 PF01580 FtsK/SpoIIIE family HYD28_RS09375 PF09397 Ftsk gamma domain HYD28_RS09375 PF17854 FtsK alpha domain HYD28_RS09375 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HYD28_RS09385 PF00004 ATPase family associated with various cellular activities (AAA) HYD28_RS09385 PF16193 AAA C-terminal domain HYD28_RS09385 PF12002 MgsA AAA+ ATPase C terminal HYD28_RS09405 PF00884 Sulfatase HYD28_RS09410 PF13186 Iron-sulfur cluster-binding domain HYD28_RS09410 PF04055 Radical SAM superfamily HYD28_RS09420 PF13472 GDSL-like Lipase/Acylhydrolase family HYD28_RS09425 PF00005 ABC transporter HYD28_RS09450 PF01618 MotA/TolQ/ExbB proton channel family HYD28_RS09455 PF02472 Biopolymer transport protein ExbD/TolR HYD28_RS09470 PF00691 OmpA family HYD28_RS09475 PF13525 Outer membrane lipoprotein HYD28_RS09475 PF16331 TolA binding protein trimerisation HYD28_RS09545 PF12833 Helix-turn-helix domain HYD28_RS09545 PF06719 AraC-type transcriptional regulator N-terminus HYD28_RS09560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HYD28_RS09580 PF17946 RecC C-terminal domain HYD28_RS09585 PF00580 UvrD/REP helicase N-terminal domain HYD28_RS09585 PF13361 UvrD-like helicase C-terminal domain HYD28_RS09585 PF12705 PD-(D/E)XK nuclease superfamily HYD28_RS09590 PF13538 UvrD-like helicase C-terminal domain HYD28_RS09600 PF03458 UPF0126 domain HYD28_RS09610 PF00027 Cyclic nucleotide-binding domain HYD28_RS09610 PF13545 Crp-like helix-turn-helix domain HYD28_RS09625 PF00106 short chain dehydrogenase HYD28_RS09630 PF01063 Amino-transferase class IV HYD28_RS09635 PF00326 Prolyl oligopeptidase family HYD28_RS09635 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HYD28_RS09645 PF01966 HD domain HYD28_RS09645 PF13286 Phosphohydrolase-associated domain HYD28_RS09660 PF03976 Polyphosphate kinase 2 (PPK2) HYD28_RS09675 PF01171 PP-loop family HYD28_RS09680 PF00582 Universal stress protein family HYD28_RS09685 PF00027 Cyclic nucleotide-binding domain HYD28_RS09685 PF13545 Crp-like helix-turn-helix domain HYD28_RS09700 PF00403 Heavy-metal-associated domain HYD28_RS09710 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HYD28_RS09710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HYD28_RS09725 PF00115 Cytochrome C and Quinol oxidase polypeptide I HYD28_RS09755 PF03461 TRCF domain HYD28_RS09755 PF00271 Helicase conserved C-terminal domain HYD28_RS09755 PF00270 DEAD/DEAH box helicase HYD28_RS09755 PF02559 CarD-like/TRCF domain HYD28_RS09755 PF17757 UvrB interaction domain HYD28_RS09765 PF04371 Porphyromonas-type peptidyl-arginine deiminase HYD28_RS09775 PF00873 AcrB/AcrD/AcrF family HYD28_RS09780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS09780 PF00529 HlyD membrane-fusion protein of T1SS HYD28_RS09795 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS09795 PF00593 TonB dependent receptor HYD28_RS09800 PF02472 Biopolymer transport protein ExbD/TolR HYD28_RS09835 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYD28_RS09845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS09845 PF03466 LysR substrate binding domain HYD28_RS09860 PF00884 Sulfatase HYD28_RS09860 PF11893 Domain of unknown function (DUF3413) HYD28_RS09870 PF04245 37-kD nucleoid-associated bacterial protein HYD28_RS09885 PF07883 Cupin domain HYD28_RS09890 PF02567 Phenazine biosynthesis-like protein HYD28_RS09895 PF12111 Polyribonucleotide phosphorylase C terminal HYD28_RS09895 PF10150 Ribonuclease E/G family HYD28_RS09895 PF00575 S1 RNA binding domain HYD28_RS09900 PF01479 S4 domain HYD28_RS09900 PF00849 RNA pseudouridylate synthase HYD28_RS09905 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS09915 PF02620 Large ribosomal RNA subunit accumulation protein YceD HYD28_RS09930 PF00698 Acyl transferase domain HYD28_RS09940 PF00550 Phosphopantetheine attachment site HYD28_RS09945 PF00109 Beta-ketoacyl synthase, N-terminal domain HYD28_RS09945 PF02801 Beta-ketoacyl synthase, C-terminal domain HYD28_RS09950 PF01063 Amino-transferase class IV HYD28_RS09955 PF02618 YceG-like family HYD28_RS09965 PF09115 DNA polymerase III, delta subunit, C terminal HYD28_RS09975 PF01026 TatD related DNase HYD28_RS09985 PF01522 Polysaccharide deacetylase HYD28_RS09995 PF00392 Bacterial regulatory proteins, gntR family HYD28_RS09995 PF07729 FCD domain HYD28_RS10005 PF00285 Citrate synthase, C-terminal domain HYD28_RS10010 PF00330 Aconitase family (aconitate hydratase) HYD28_RS10010 PF00694 Aconitase C-terminal domain HYD28_RS10015 PF04303 PrpF protein HYD28_RS10050 PF01554 MatE HYD28_RS10055 PF00677 Lumazine binding domain HYD28_RS10065 PF03881 Fructosamine kinase HYD28_RS10085 PF01979 Amidohydrolase family HYD28_RS10095 PF01566 Natural resistance-associated macrophage protein HYD28_RS10115 PF00664 ABC transporter transmembrane region HYD28_RS10115 PF00005 ABC transporter HYD28_RS10135 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS10135 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS10135 PF00563 EAL domain HYD28_RS10140 PF04389 Peptidase family M28 HYD28_RS10140 PF04151 Bacterial pre-peptidase C-terminal domain HYD28_RS10145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS10145 PF00672 HAMP domain HYD28_RS10145 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS10160 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HYD28_RS10160 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HYD28_RS10170 PF13193 AMP-binding enzyme C-terminal domain HYD28_RS10170 PF00501 AMP-binding enzyme HYD28_RS10185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HYD28_RS10185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HYD28_RS10185 PF02824 TGS domain HYD28_RS10185 PF03129 Anticodon binding domain HYD28_RS10210 PF00753 Metallo-beta-lactamase superfamily HYD28_RS10215 PF01037 Lrp/AsnC ligand binding domain HYD28_RS10215 PF13404 AsnC-type helix-turn-helix domain HYD28_RS10220 PF00916 Sulfate permease family HYD28_RS10220 PF01740 STAS domain HYD28_RS10225 PF07694 5TMR of 5TMR-LYT HYD28_RS10225 PF06580 Histidine kinase HYD28_RS10230 PF00072 Response regulator receiver domain HYD28_RS10230 PF04397 LytTr DNA-binding domain HYD28_RS10235 PF02887 Pyruvate kinase, alpha/beta domain HYD28_RS10235 PF00224 Pyruvate kinase, barrel domain HYD28_RS10240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HYD28_RS10240 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HYD28_RS10245 PF17763 Glutaminase/Asparaginase C-terminal domain HYD28_RS10245 PF00710 Asparaginase, N-terminal HYD28_RS10250 PF01343 Peptidase family S49 HYD28_RS10255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HYD28_RS10255 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYD28_RS10265 PF00881 Nitroreductase family HYD28_RS10285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HYD28_RS10285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYD28_RS10290 PF01475 Ferric uptake regulator family HYD28_RS10295 PF00258 Flavodoxin HYD28_RS10300 PF01402 Ribbon-helix-helix protein, copG family HYD28_RS10310 PF00561 alpha/beta hydrolase fold HYD28_RS10320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HYD28_RS10320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HYD28_RS10320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HYD28_RS10320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HYD28_RS10330 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal HYD28_RS10330 PF00676 Dehydrogenase E1 component HYD28_RS10335 PF02780 Transketolase, C-terminal domain HYD28_RS10335 PF02779 Transketolase, pyrimidine binding domain HYD28_RS10340 PF02817 e3 binding domain HYD28_RS10340 PF00364 Biotin-requiring enzyme HYD28_RS10340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HYD28_RS10360 PF00005 ABC transporter HYD28_RS10365 PF12679 ABC-2 family transporter protein HYD28_RS10370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS10370 PF00672 HAMP domain HYD28_RS10370 PF00072 Response regulator receiver domain HYD28_RS10370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS10370 PF01627 Hpt domain HYD28_RS10370 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS10385 PF01980 tRNA-methyltransferase O HYD28_RS10385 PF18389 TrmO C-terminal domain HYD28_RS10405 PF01012 Electron transfer flavoprotein domain HYD28_RS10410 PF01012 Electron transfer flavoprotein domain HYD28_RS10410 PF00766 Electron transfer flavoprotein FAD-binding domain HYD28_RS10415 PF12849 PBP superfamily domain HYD28_RS10430 PF00202 Aminotransferase class-III HYD28_RS10445 PF13649 Methyltransferase domain HYD28_RS10455 PF01435 Peptidase family M48 HYD28_RS10480 PF03992 Antibiotic biosynthesis monooxygenase HYD28_RS10490 PF00440 Bacterial regulatory proteins, tetR family HYD28_RS10495 PF00005 ABC transporter HYD28_RS10495 PF12848 ABC transporter HYD28_RS10500 PF00731 AIR carboxylase HYD28_RS10505 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HYD28_RS10505 PF02222 ATP-grasp domain HYD28_RS10515 PF03601 Conserved hypothetical protein 698 HYD28_RS10545 PF03949 Malic enzyme, NAD binding domain HYD28_RS10545 PF00390 Malic enzyme, N-terminal domain HYD28_RS10555 PF10011 Predicted membrane protein (DUF2254) HYD28_RS10605 PF00005 ABC transporter HYD28_RS10605 PF12848 ABC transporter HYD28_RS10605 PF16326 ABC transporter C-terminal domain HYD28_RS10615 PF00072 Response regulator receiver domain HYD28_RS10630 PF11992 Domain of unknown function (DUF3488) HYD28_RS10630 PF13559 Domain of unknown function (DUF4129) HYD28_RS10630 PF01841 Transglutaminase-like superfamily HYD28_RS10635 PF13726 Na+-H+ antiporter family HYD28_RS10635 PF03553 Na+/H+ antiporter family HYD28_RS10640 PF09308 LuxQ, periplasmic HYD28_RS10640 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS10640 PF00072 Response regulator receiver domain HYD28_RS10645 PF01933 Uncharacterised protein family UPF0052 HYD28_RS10660 PF00072 Response regulator receiver domain HYD28_RS10660 PF00158 Sigma-54 interaction domain HYD28_RS10660 PF02954 Bacterial regulatory protein, Fis family HYD28_RS10690 PF02397 Bacterial sugar transferase HYD28_RS10695 PF13439 Glycosyltransferase Family 4 HYD28_RS10695 PF00534 Glycosyl transferases group 1 HYD28_RS10710 PF14602 Hexapeptide repeat of succinyl-transferase HYD28_RS10710 PF12464 Maltose acetyltransferase HYD28_RS10725 PF00534 Glycosyl transferases group 1 HYD28_RS10725 PF13439 Glycosyltransferase Family 4 HYD28_RS10730 PF00535 Glycosyl transferase family 2 HYD28_RS10735 PF00072 Response regulator receiver domain HYD28_RS10750 PF03061 Thioesterase superfamily HYD28_RS10755 PF01551 Peptidase family M23 HYD28_RS10770 PF04957 Ribosome modulation factor HYD28_RS10775 PF00440 Bacterial regulatory proteins, tetR family HYD28_RS10775 PF16925 Tetracyclin repressor-like, C-terminal domain HYD28_RS10780 PF08240 Alcohol dehydrogenase GroES-like domain HYD28_RS10780 PF00107 Zinc-binding dehydrogenase HYD28_RS10785 PF09905 DNA-binding protein VF530 HYD28_RS10790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HYD28_RS10815 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HYD28_RS10815 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HYD28_RS10820 PF00378 Enoyl-CoA hydratase/isomerase HYD28_RS10820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HYD28_RS10820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HYD28_RS10825 PF00378 Enoyl-CoA hydratase/isomerase HYD28_RS10830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HYD28_RS10830 PF02770 Acyl-CoA dehydrogenase, middle domain HYD28_RS10830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HYD28_RS10835 PF00171 Aldehyde dehydrogenase family HYD28_RS10840 PF00108 Thiolase, N-terminal domain HYD28_RS10840 PF02803 Thiolase, C-terminal domain HYD28_RS10845 PF09278 MerR, DNA binding HYD28_RS10845 PF00376 MerR family regulatory protein HYD28_RS10855 PF01039 Carboxyl transferase domain HYD28_RS10860 PF00378 Enoyl-CoA hydratase/isomerase HYD28_RS10865 PF00364 Biotin-requiring enzyme HYD28_RS10865 PF18140 Propionyl-coenzyme A carboxylase BT domain HYD28_RS10865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HYD28_RS10865 PF02785 Biotin carboxylase C-terminal domain HYD28_RS10865 PF00289 Biotin carboxylase, N-terminal domain HYD28_RS10870 PF00682 HMGL-like HYD28_RS10875 PF01144 Coenzyme A transferase HYD28_RS10880 PF01144 Coenzyme A transferase HYD28_RS10885 PF03466 LysR substrate binding domain HYD28_RS10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS10910 PF00144 Beta-lactamase HYD28_RS10915 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS10915 PF18500 CadC C-terminal domain 1 HYD28_RS10930 PF01625 Peptide methionine sulfoxide reductase HYD28_RS10930 PF08534 Redoxin HYD28_RS10930 PF01641 SelR domain HYD28_RS10935 PF02789 Cytosol aminopeptidase family, N-terminal domain HYD28_RS10935 PF00883 Cytosol aminopeptidase family, catalytic domain HYD28_RS10940 PF02682 Carboxyltransferase domain, subdomain C and D HYD28_RS10945 PF02626 Carboxyltransferase domain, subdomain A and B HYD28_RS10950 PF00733 Asparagine synthase HYD28_RS10950 PF13537 Glutamine amidotransferase domain HYD28_RS10955 PF02028 BCCT, betaine/carnitine/choline family transporter HYD28_RS10960 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HYD28_RS10960 PF00929 Exonuclease HYD28_RS10960 PF02811 PHP domain HYD28_RS10960 PF14579 Helix-hairpin-helix motif HYD28_RS10960 PF07733 Bacterial DNA polymerase III alpha NTPase domain HYD28_RS10970 PF00873 AcrB/AcrD/AcrF family HYD28_RS10990 PF00270 DEAD/DEAH box helicase HYD28_RS10990 PF00271 Helicase conserved C-terminal domain HYD28_RS10995 PF17783 CvfB-like winged helix domain HYD28_RS10995 PF13509 S1 domain HYD28_RS11000 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYD28_RS11015 PF18073 Rubredoxin metal binding domain HYD28_RS11030 PF00575 S1 RNA binding domain HYD28_RS11035 PF02224 Cytidylate kinase HYD28_RS11050 PF00521 DNA gyrase/topoisomerase IV, subunit A HYD28_RS11050 PF03989 DNA gyrase C-terminal domain, beta-propeller HYD28_RS11060 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS11065 PF00317 Ribonucleotide reductase, all-alpha domain HYD28_RS11065 PF03477 ATP cone domain HYD28_RS11065 PF02867 Ribonucleotide reductase, barrel domain HYD28_RS11070 PF00268 Ribonucleotide reductase, small chain HYD28_RS11075 PF00111 2Fe-2S iron-sulfur cluster binding domain HYD28_RS11085 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS11085 PF00593 TonB dependent receptor HYD28_RS11100 PF00583 Acetyltransferase (GNAT) family HYD28_RS11100 PF00696 Amino acid kinase family HYD28_RS11105 PF02629 CoA binding domain HYD28_RS11105 PF00549 CoA-ligase HYD28_RS11115 PF00364 Biotin-requiring enzyme HYD28_RS11115 PF02817 e3 binding domain HYD28_RS11115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HYD28_RS11120 PF00676 Dehydrogenase E1 component HYD28_RS11120 PF16078 2-oxoglutarate dehydrogenase N-terminus HYD28_RS11120 PF16870 2-oxoglutarate dehydrogenase C-terminal HYD28_RS11120 PF02779 Transketolase, pyrimidine binding domain HYD28_RS11125 PF13085 2Fe-2S iron-sulfur cluster binding domain HYD28_RS11130 PF02910 Fumarate reductase flavoprotein C-term HYD28_RS11130 PF00890 FAD binding domain HYD28_RS11135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HYD28_RS11140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HYD28_RS11145 PF00285 Citrate synthase, C-terminal domain HYD28_RS11150 PF00266 Aminotransferase class-V HYD28_RS11155 PF02657 Fe-S metabolism associated domain HYD28_RS11160 PF00899 ThiF family HYD28_RS11165 PF00849 RNA pseudouridylate synthase HYD28_RS11190 PF03772 Competence protein HYD28_RS11190 PF00753 Metallo-beta-lactamase superfamily HYD28_RS11230 PF05088 Bacterial NAD-glutamate dehydrogenase HYD28_RS11245 PF07044 Protein of unknown function (DUF1329) HYD28_RS11260 PF01433 Peptidase family M1 domain HYD28_RS11260 PF11940 Domain of unknown function (DUF3458) Ig-like fold HYD28_RS11260 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HYD28_RS11270 PF00595 PDZ domain HYD28_RS11270 PF03572 Peptidase family S41 HYD28_RS11270 PF11818 C-terminal domain of tail specific protease (DUF3340) HYD28_RS11270 PF17804 Tail specific protease N-terminal domain HYD28_RS11275 PF17516 ProQ C-terminal domain HYD28_RS11275 PF04352 ProQ/FINO family HYD28_RS11285 PF13185 GAF domain HYD28_RS11305 PF01027 Inhibitor of apoptosis-promoting Bax1 HYD28_RS11315 PF02635 DsrE/DsrF-like family HYD28_RS11320 PF04077 DsrH like protein HYD28_RS11325 PF04358 DsrC like protein HYD28_RS11330 PF00849 RNA pseudouridylate synthase HYD28_RS11335 PF00293 NUDIX domain HYD28_RS11355 PF08007 Cupin superfamily protein HYD28_RS11375 PF12704 MacB-like periplasmic core domain HYD28_RS11375 PF02687 FtsX-like permease family HYD28_RS11385 PF12704 MacB-like periplasmic core domain HYD28_RS11385 PF02687 FtsX-like permease family HYD28_RS11390 PF03466 LysR substrate binding domain HYD28_RS11390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS11395 PF08240 Alcohol dehydrogenase GroES-like domain HYD28_RS11395 PF00107 Zinc-binding dehydrogenase HYD28_RS11400 PF00756 Putative esterase HYD28_RS11415 PF02028 BCCT, betaine/carnitine/choline family transporter HYD28_RS11420 PF02308 MgtC family HYD28_RS11430 PF02801 Beta-ketoacyl synthase, C-terminal domain HYD28_RS11430 PF00109 Beta-ketoacyl synthase, N-terminal domain HYD28_RS11435 PF12833 Helix-turn-helix domain HYD28_RS11440 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS11440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS11440 PF00989 PAS fold HYD28_RS11455 PF02308 MgtC family HYD28_RS11465 PF08443 RimK-like ATP-grasp domain HYD28_RS11465 PF18030 RimK PreATP-grasp domain HYD28_RS11470 PF01272 Transcription elongation factor, GreA/GreB, C-term HYD28_RS11470 PF03449 Transcription elongation factor, N-terminal HYD28_RS11475 PF07549 SecD/SecF GG Motif HYD28_RS11475 PF02355 Protein export membrane protein HYD28_RS11480 PF02355 Protein export membrane protein HYD28_RS11480 PF07549 SecD/SecF GG Motif HYD28_RS11480 PF13721 SecD export protein N-terminal TM region HYD28_RS11490 PF00107 Zinc-binding dehydrogenase HYD28_RS11490 PF08240 Alcohol dehydrogenase GroES-like domain HYD28_RS11495 PF00005 ABC transporter HYD28_RS11495 PF00664 ABC transporter transmembrane region HYD28_RS11520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HYD28_RS11520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HYD28_RS11525 PF01081 KDPG and KHG aldolase HYD28_RS11530 PF00920 Dehydratase family HYD28_RS11535 PF00356 Bacterial regulatory proteins, lacI family HYD28_RS11540 PF02685 Glucokinase HYD28_RS11545 PF00356 Bacterial regulatory proteins, lacI family HYD28_RS11550 PF18381 YcaO cyclodehydratase C-terminal domain HYD28_RS11550 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HYD28_RS11565 PF09137 Glucodextranase, domain N HYD28_RS11565 PF00723 Glycosyl hydrolases family 15 HYD28_RS11575 PF16657 Maltogenic Amylase, C-terminal domain HYD28_RS11575 PF00128 Alpha amylase, catalytic domain HYD28_RS11575 PF02903 Alpha amylase, N-terminal ig-like domain HYD28_RS11580 PF09087 Cyclomaltodextrinase, N-terminal HYD28_RS11580 PF10438 Cyclo-malto-dextrinase C-terminal domain HYD28_RS11580 PF00128 Alpha amylase, catalytic domain HYD28_RS11585 PF04820 Tryptophan halogenase HYD28_RS11595 PF00128 Alpha amylase, catalytic domain HYD28_RS11600 PF03350 Uncharacterized protein family, UPF0114 HYD28_RS11615 PF02627 Carboxymuconolactone decarboxylase family HYD28_RS11620 PF08272 Topoisomerase I zinc-ribbon-like HYD28_RS11620 PF01396 Topoisomerase DNA binding C4 zinc finger HYD28_RS11620 PF01751 Toprim domain HYD28_RS11620 PF01131 DNA topoisomerase HYD28_RS11630 PF00375 Sodium:dicarboxylate symporter family HYD28_RS11635 PF01343 Peptidase family S49 HYD28_RS11635 PF08496 Peptidase family S49 N-terminal HYD28_RS11640 PF12262 Bacterial virulence factor lipase N-terminal HYD28_RS11645 PF00106 short chain dehydrogenase HYD28_RS11650 PF13091 PLD-like domain HYD28_RS11655 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYD28_RS11665 PF04376 Arginine-tRNA-protein transferase, N terminus HYD28_RS11665 PF04377 Arginine-tRNA-protein transferase, C terminus HYD28_RS11675 PF10431 C-terminal, D2-small domain, of ClpB protein HYD28_RS11675 PF17871 AAA lid domain HYD28_RS11675 PF00004 ATPase family associated with various cellular activities (AAA) HYD28_RS11675 PF07724 AAA domain (Cdc48 subfamily) HYD28_RS11675 PF02861 Clp amino terminal domain, pathogenicity island component HYD28_RS11680 PF02617 ATP-dependent Clp protease adaptor protein ClpS HYD28_RS11685 PF00313 'Cold-shock' DNA-binding domain HYD28_RS11690 PF03971 Monomeric isocitrate dehydrogenase HYD28_RS11695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS11695 PF00072 Response regulator receiver domain HYD28_RS11695 PF01627 Hpt domain HYD28_RS11695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS11695 PF00672 HAMP domain HYD28_RS11695 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS11705 PF00072 Response regulator receiver domain HYD28_RS11705 PF09308 LuxQ, periplasmic HYD28_RS11705 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS11705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS11710 PF00563 EAL domain HYD28_RS11710 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS11710 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS11715 PF01370 NAD dependent epimerase/dehydratase family HYD28_RS11715 PF08338 Domain of unknown function (DUF1731) HYD28_RS11720 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS11720 PF00072 Response regulator receiver domain HYD28_RS11725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS11725 PF03466 LysR substrate binding domain HYD28_RS11895 PF08448 PAS fold HYD28_RS11895 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS11900 PF05840 Bacteriophage replication gene A protein (GPA) HYD28_RS11930 PF00717 Peptidase S24-like HYD28_RS11950 PF00717 Peptidase S24-like HYD28_RS11965 PF13356 Arm DNA-binding domain HYD28_RS11965 PF00589 Phage integrase family HYD28_RS11965 PF14659 Phage integrase, N-terminal SAM-like domain HYD28_RS11970 PF08411 Exonuclease C-terminal HYD28_RS11970 PF00929 Exonuclease HYD28_RS11975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HYD28_RS11975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HYD28_RS11980 PF00255 Glutathione peroxidase HYD28_RS11985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HYD28_RS11985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HYD28_RS11990 PF00209 Sodium:neurotransmitter symporter family HYD28_RS12000 PF00696 Amino acid kinase family HYD28_RS12000 PF01842 ACT domain HYD28_RS12005 PF03600 Citrate transporter HYD28_RS12035 PF03692 Putative zinc- or iron-chelating domain HYD28_RS12040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS12045 PF00873 AcrB/AcrD/AcrF family HYD28_RS12065 PF00144 Beta-lactamase HYD28_RS12065 PF11954 Domain of unknown function (DUF3471) HYD28_RS12070 PF03466 LysR substrate binding domain HYD28_RS12070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS12075 PF00881 Nitroreductase family HYD28_RS12085 PF03449 Transcription elongation factor, N-terminal HYD28_RS12085 PF01272 Transcription elongation factor, GreA/GreB, C-term HYD28_RS12090 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HYD28_RS12090 PF02142 MGS-like domain HYD28_RS12090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HYD28_RS12095 PF00117 Glutamine amidotransferase class-I HYD28_RS12095 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HYD28_RS12115 PF01435 Peptidase family M48 HYD28_RS12120 PF07690 Major Facilitator Superfamily HYD28_RS12130 PF01628 HrcA protein C terminal domain HYD28_RS12130 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HYD28_RS12145 PF02463 RecF/RecN/SMC N terminal domain HYD28_RS12165 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS12165 PF00672 HAMP domain HYD28_RS12165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS12175 PF00072 Response regulator receiver domain HYD28_RS12175 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS12185 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYD28_RS12185 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HYD28_RS12190 PF01493 GXGXG motif HYD28_RS12190 PF01645 Conserved region in glutamate synthase HYD28_RS12190 PF04898 Glutamate synthase central domain HYD28_RS12190 PF00310 Glutamine amidotransferases class-II HYD28_RS12200 PF00005 ABC transporter HYD28_RS12205 PF12704 MacB-like periplasmic core domain HYD28_RS12205 PF02687 FtsX-like permease family HYD28_RS12205 PF00005 ABC transporter HYD28_RS12210 PF00005 ABC transporter HYD28_RS12210 PF02687 FtsX-like permease family HYD28_RS12210 PF12704 MacB-like periplasmic core domain HYD28_RS12215 PF02954 Bacterial regulatory protein, Fis family HYD28_RS12215 PF00158 Sigma-54 interaction domain HYD28_RS12215 PF00072 Response regulator receiver domain HYD28_RS12220 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS12220 PF00989 PAS fold HYD28_RS12225 PF00462 Glutaredoxin HYD28_RS12235 PF06798 PrkA serine protein kinase C-terminal domain HYD28_RS12235 PF08298 PrkA AAA domain HYD28_RS12240 PF04285 Protein of unknown function (DUF444) HYD28_RS12245 PF04293 SpoVR like protein HYD28_RS12250 PF00582 Universal stress protein family HYD28_RS12255 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS12255 PF17158 Membrane-associated sensor, integral membrane domain HYD28_RS12260 PF01339 CheB methylesterase HYD28_RS12260 PF00072 Response regulator receiver domain HYD28_RS12265 PF08534 Redoxin HYD28_RS12290 PF12169 DNA polymerase III subunits gamma and tau domain III HYD28_RS12290 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HYD28_RS12290 PF12170 DNA polymerase III tau subunit V interacting with alpha HYD28_RS12300 PF09836 Putative DNA-binding domain HYD28_RS12305 PF05114 Protein of unknown function (DUF692) HYD28_RS12315 PF01207 Dihydrouridine synthase (Dus) HYD28_RS12335 PF03544 Gram-negative bacterial TonB protein C-terminal HYD28_RS12340 PF02472 Biopolymer transport protein ExbD/TolR HYD28_RS12345 PF01618 MotA/TolQ/ExbB proton channel family HYD28_RS12350 PF01618 MotA/TolQ/ExbB proton channel family HYD28_RS12360 PF00196 Bacterial regulatory proteins, luxR family HYD28_RS12360 PF00072 Response regulator receiver domain HYD28_RS12365 PF00313 'Cold-shock' DNA-binding domain HYD28_RS12370 PF01979 Amidohydrolase family HYD28_RS12375 PF00563 EAL domain HYD28_RS12375 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS12375 PF13188 PAS domain HYD28_RS12375 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS12380 PF09317 Domain of unknown function (DUF1974) HYD28_RS12380 PF02770 Acyl-CoA dehydrogenase, middle domain HYD28_RS12380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HYD28_RS12380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HYD28_RS12395 PF08000 Bacterial PH domain HYD28_RS12400 PF00005 ABC transporter HYD28_RS12410 PF01053 Cys/Met metabolism PLP-dependent enzyme HYD28_RS12415 PF00293 NUDIX domain HYD28_RS12415 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HYD28_RS12415 PF09297 NADH pyrophosphatase zinc ribbon domain HYD28_RS12420 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HYD28_RS12430 PF01979 Amidohydrolase family HYD28_RS12435 PF01869 BadF/BadG/BcrA/BcrD ATPase family HYD28_RS12455 PF00271 Helicase conserved C-terminal domain HYD28_RS12455 PF00270 DEAD/DEAH box helicase HYD28_RS12495 PF01904 Protein of unknown function DUF72 HYD28_RS12500 PF01863 Protein of unknown function DUF45 HYD28_RS12530 PF00551 Formyl transferase HYD28_RS12540 PF13230 Glutamine amidotransferases class-II HYD28_RS12545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HYD28_RS12545 PF09317 Domain of unknown function (DUF1974) HYD28_RS12545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HYD28_RS12545 PF02770 Acyl-CoA dehydrogenase, middle domain HYD28_RS12550 PF00326 Prolyl oligopeptidase family HYD28_RS12560 PF02810 SEC-C motif HYD28_RS12575 PF03466 LysR substrate binding domain HYD28_RS12575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS12580 PF02698 DUF218 domain HYD28_RS12585 PF01784 NIF3 (NGG1p interacting factor 3) HYD28_RS12600 PF00440 Bacterial regulatory proteins, tetR family HYD28_RS12600 PF17932 Tetracyclin repressor-like, C-terminal domain HYD28_RS12605 PF01979 Amidohydrolase family HYD28_RS12610 PF06167 Glucose-regulated metallo-peptidase M90 HYD28_RS12615 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS12620 PF00302 Chloramphenicol acetyltransferase HYD28_RS12625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HYD28_RS12625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HYD28_RS12635 PF04715 Anthranilate synthase component I, N terminal region HYD28_RS12635 PF00425 chorismate binding enzyme HYD28_RS12640 PF00293 NUDIX domain HYD28_RS12645 PF03315 Serine dehydratase beta chain HYD28_RS12645 PF03313 Serine dehydratase alpha chain HYD28_RS12650 PF03466 LysR substrate binding domain HYD28_RS12650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS12660 PF00860 Permease family HYD28_RS12715 PF00929 Exonuclease HYD28_RS12725 PF04273 Putative phosphatase (DUF442) HYD28_RS12725 PF00753 Metallo-beta-lactamase superfamily HYD28_RS12730 PF08241 Methyltransferase domain HYD28_RS12740 PF01464 Transglycosylase SLT domain HYD28_RS12740 PF01476 LysM domain HYD28_RS12745 PF00491 Arginase family HYD28_RS12750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HYD28_RS12750 PF17944 Arginine decarboxylase C-terminal helical extension HYD28_RS12750 PF17810 Arginine decarboxylase helical bundle domain HYD28_RS12775 PF04241 Protein of unknown function (DUF423) HYD28_RS12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS12785 PF03466 LysR substrate binding domain HYD28_RS12810 PF11849 Domain of unknown function (DUF3369) HYD28_RS12815 PF13847 Methyltransferase domain HYD28_RS12815 PF17827 PrmC N-terminal domain HYD28_RS12840 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HYD28_RS12840 PF14572 Phosphoribosyl synthetase-associated domain HYD28_RS12855 PF01926 50S ribosome-binding GTPase HYD28_RS12855 PF06071 Protein of unknown function (DUF933) HYD28_RS12910 PF01494 FAD binding domain HYD28_RS12920 PF02562 PhoH-like protein HYD28_RS12930 PF03471 Transporter associated domain HYD28_RS12930 PF00571 CBS domain HYD28_RS12935 PF00795 Carbon-nitrogen hydrolase HYD28_RS12940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYD28_RS12940 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HYD28_RS12945 PF13654 AAA domain HYD28_RS12945 PF05362 Lon protease (S16) C-terminal proteolytic domain HYD28_RS12960 PF04390 Lipopolysaccharide-assembly HYD28_RS12970 PF01467 Cytidylyltransferase-like HYD28_RS12985 PF03717 Penicillin-binding Protein dimerisation domain HYD28_RS12985 PF00905 Penicillin binding protein transpeptidase domain HYD28_RS12990 PF01098 Cell cycle protein HYD28_RS12995 PF05036 Sporulation related domain HYD28_RS12995 PF03330 Lytic transglycolase HYD28_RS13000 PF00768 D-alanyl-D-alanine carboxypeptidase HYD28_RS13000 PF07943 Penicillin-binding protein 5, C-terminal domain HYD28_RS13035 PF02774 Semialdehyde dehydrogenase, dimerisation domain HYD28_RS13035 PF01118 Semialdehyde dehydrogenase, NAD binding domain HYD28_RS13045 PF00109 Beta-ketoacyl synthase, N-terminal domain HYD28_RS13045 PF02801 Beta-ketoacyl synthase, C-terminal domain HYD28_RS13055 PF13460 NAD(P)H-binding HYD28_RS13065 PF00672 HAMP domain HYD28_RS13065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS13075 PF00378 Enoyl-CoA hydratase/isomerase HYD28_RS13105 PF00929 Exonuclease HYD28_RS13110 PF00691 OmpA family HYD28_RS13110 PF18393 MotY N-terminal domain HYD28_RS13120 PF03222 Tryptophan/tyrosine permease family HYD28_RS13140 PF00593 TonB dependent receptor HYD28_RS13140 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS13145 PF00072 Response regulator receiver domain HYD28_RS13145 PF00196 Bacterial regulatory proteins, luxR family HYD28_RS13170 PF03840 Preprotein translocase SecG subunit HYD28_RS13185 PF00809 Pterin binding enzyme HYD28_RS13190 PF00004 ATPase family associated with various cellular activities (AAA) HYD28_RS13190 PF06480 FtsH Extracellular HYD28_RS13190 PF17862 AAA+ lid domain HYD28_RS13190 PF01434 Peptidase family M41 HYD28_RS13200 PF01985 CRS1 / YhbY (CRM) domain HYD28_RS13215 PF06629 MltA-interacting protein MipA HYD28_RS13225 PF00072 Response regulator receiver domain HYD28_RS13225 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS13230 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS13230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS13230 PF00672 HAMP domain HYD28_RS13230 PF16527 Two-component sensor protein CpxA, periplasmic domain HYD28_RS13235 PF00209 Sodium:neurotransmitter symporter family HYD28_RS13240 PF13673 Acetyltransferase (GNAT) domain HYD28_RS13245 PF07070 SpoOM protein HYD28_RS13250 PF00999 Sodium/hydrogen exchanger family HYD28_RS13265 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS13265 PF00672 HAMP domain HYD28_RS13265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS13270 PF00072 Response regulator receiver domain HYD28_RS13270 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS13285 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS13290 PF03466 LysR substrate binding domain HYD28_RS13290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS13315 PF01541 GIY-YIG catalytic domain HYD28_RS13320 PF04355 SmpA / OmlA family HYD28_RS13330 PF03364 Polyketide cyclase / dehydrase and lipid transport HYD28_RS13340 PF00593 TonB dependent receptor HYD28_RS13340 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS13345 PF10417 C-terminal domain of 1-Cys peroxiredoxin HYD28_RS13345 PF00578 AhpC/TSA family HYD28_RS13350 PF00392 Bacterial regulatory proteins, gntR family HYD28_RS13350 PF07840 FadR C-terminal domain HYD28_RS13355 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HYD28_RS13360 PF01817 Chorismate mutase type II HYD28_RS13360 PF02153 Prephenate dehydrogenase HYD28_RS13385 PF02881 SRP54-type protein, helical bundle domain HYD28_RS13385 PF02978 Signal peptide binding domain HYD28_RS13385 PF00448 SRP54-type protein, GTPase domain HYD28_RS13390 PF01578 Cytochrome C assembly protein HYD28_RS13395 PF00571 CBS domain HYD28_RS13395 PF01595 Cyclin M transmembrane N-terminal domain HYD28_RS13395 PF03471 Transporter associated domain HYD28_RS13400 PF05552 Conserved TM helix HYD28_RS13400 PF00924 Mechanosensitive ion channel HYD28_RS13405 PF11490 DNA polymerase III polC-type N-terminus II HYD28_RS13405 PF00929 Exonuclease HYD28_RS13405 PF02811 PHP domain HYD28_RS13405 PF14579 Helix-hairpin-helix motif HYD28_RS13405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HYD28_RS13405 PF07733 Bacterial DNA polymerase III alpha NTPase domain HYD28_RS13415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS13415 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS13415 PF00672 HAMP domain HYD28_RS13420 PF00072 Response regulator receiver domain HYD28_RS13420 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS13425 PF00884 Sulfatase HYD28_RS13430 PF08019 Phosphoethanolamine transferase EptA/EptB HYD28_RS13430 PF00884 Sulfatase HYD28_RS13435 PF01219 Prokaryotic diacylglycerol kinase HYD28_RS13450 PF02638 Glycosyl hydrolase-like 10 HYD28_RS13475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS13475 PF09308 LuxQ, periplasmic HYD28_RS13475 PF00072 Response regulator receiver domain HYD28_RS13475 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS13485 PF00128 Alpha amylase, catalytic domain HYD28_RS13485 PF02903 Alpha amylase, N-terminal ig-like domain HYD28_RS13485 PF16657 Maltogenic Amylase, C-terminal domain HYD28_RS13515 PF02254 TrkA-N domain HYD28_RS13515 PF00999 Sodium/hydrogen exchanger family HYD28_RS13515 PF02080 TrkA-C domain HYD28_RS13520 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS13520 PF00072 Response regulator receiver domain HYD28_RS13530 PF01171 PP-loop family HYD28_RS13530 PF09179 TilS substrate binding domain HYD28_RS13530 PF11734 TilS substrate C-terminal domain HYD28_RS13540 PF14579 Helix-hairpin-helix motif HYD28_RS13540 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HYD28_RS13540 PF07733 Bacterial DNA polymerase III alpha NTPase domain HYD28_RS13540 PF02811 PHP domain HYD28_RS13540 PF01336 OB-fold nucleic acid binding domain HYD28_RS13555 PF01654 Cytochrome bd terminal oxidase subunit I HYD28_RS13560 PF02322 Cytochrome bd terminal oxidase subunit II HYD28_RS13565 PF08173 Membrane bound YbgT-like protein HYD28_RS13570 PF00664 ABC transporter transmembrane region HYD28_RS13570 PF00005 ABC transporter HYD28_RS13575 PF00664 ABC transporter transmembrane region HYD28_RS13575 PF00005 ABC transporter HYD28_RS13580 PF03330 Lytic transglycolase HYD28_RS13585 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HYD28_RS13585 PF00132 Bacterial transferase hexapeptide (six repeats) HYD28_RS13605 PF07244 Surface antigen variable number repeat HYD28_RS13605 PF01103 Surface antigen HYD28_RS13610 PF02163 Peptidase family M50 HYD28_RS13610 PF17820 PDZ domain HYD28_RS13615 PF13288 DXP reductoisomerase C-terminal domain HYD28_RS13615 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HYD28_RS13615 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HYD28_RS13625 PF01255 Putative undecaprenyl diphosphate synthase HYD28_RS13630 PF01765 Ribosome recycling factor HYD28_RS13640 PF00889 Elongation factor TS HYD28_RS13650 PF00557 Metallopeptidase family M24 HYD28_RS13670 PF00873 AcrB/AcrD/AcrF family HYD28_RS13690 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HYD28_RS13695 PF01053 Cys/Met metabolism PLP-dependent enzyme HYD28_RS13700 PF05128 Domain of unknown function (DUF697) HYD28_RS13705 PF04317 YcjX-like family, DUF463 HYD28_RS13710 PF04024 PspC domain HYD28_RS13720 PF04012 PspA/IM30 family HYD28_RS13725 PF00158 Sigma-54 interaction domain HYD28_RS13725 PF02954 Bacterial regulatory protein, Fis family HYD28_RS13730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYD28_RS13735 PF00528 Binding-protein-dependent transport system inner membrane component HYD28_RS13740 PF00528 Binding-protein-dependent transport system inner membrane component HYD28_RS13740 PF12911 N-terminal TM domain of oligopeptide transport permease C HYD28_RS13745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYD28_RS13745 PF00005 ABC transporter HYD28_RS13750 PF00005 ABC transporter HYD28_RS13765 PF13145 PPIC-type PPIASE domain HYD28_RS13770 PF00216 Bacterial DNA-binding protein HYD28_RS13775 PF00004 ATPase family associated with various cellular activities (AAA) HYD28_RS13775 PF05362 Lon protease (S16) C-terminal proteolytic domain HYD28_RS13775 PF02190 ATP-dependent protease La (LON) substrate-binding domain HYD28_RS13780 PF07724 AAA domain (Cdc48 subfamily) HYD28_RS13780 PF06689 ClpX C4-type zinc finger HYD28_RS13780 PF10431 C-terminal, D2-small domain, of ClpB protein HYD28_RS13835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HYD28_RS13840 PF12850 Calcineurin-like phosphoesterase superfamily domain HYD28_RS13850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS13850 PF00989 PAS fold HYD28_RS13850 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS13855 PF00563 EAL domain HYD28_RS13855 PF01590 GAF domain HYD28_RS13855 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS13855 PF00360 Phytochrome region HYD28_RS13905 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HYD28_RS13925 PF00924 Mechanosensitive ion channel HYD28_RS13925 PF12795 Mechanosensitive ion channel porin domain HYD28_RS13925 PF12794 Mechanosensitive ion channel inner membrane domain 1 HYD28_RS13935 PF01432 Peptidase family M3 HYD28_RS13940 PF00892 EamA-like transporter family HYD28_RS13955 PF03466 LysR substrate binding domain HYD28_RS13955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS13960 PF01965 DJ-1/PfpI family HYD28_RS13980 PF02798 Glutathione S-transferase, N-terminal domain HYD28_RS13995 PF02525 Flavodoxin-like fold HYD28_RS14000 PF03441 FAD binding domain of DNA photolyase HYD28_RS14000 PF00875 DNA photolyase HYD28_RS14010 PF02566 OsmC-like protein HYD28_RS14040 PF00582 Universal stress protein family HYD28_RS14045 PF07690 Major Facilitator Superfamily HYD28_RS14050 PF01381 Helix-turn-helix HYD28_RS14060 PF12894 Anaphase-promoting complex subunit 4 WD40 domain HYD28_RS14060 PF00400 WD domain, G-beta repeat HYD28_RS14070 PF01483 Proprotein convertase P-domain HYD28_RS14070 PF00082 Subtilase family HYD28_RS14085 PF00563 EAL domain HYD28_RS14085 PF01590 GAF domain HYD28_RS14085 PF00360 Phytochrome region HYD28_RS14085 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS14090 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS14090 PF00593 TonB dependent receptor HYD28_RS14110 PF01042 Endoribonuclease L-PSP HYD28_RS14115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS14115 PF03466 LysR substrate binding domain HYD28_RS14120 PF03448 MgtE intracellular N domain HYD28_RS14120 PF01769 Divalent cation transporter HYD28_RS14120 PF00571 CBS domain HYD28_RS14130 PF00072 Response regulator receiver domain HYD28_RS14130 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS14135 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS14135 PF00593 TonB dependent receptor HYD28_RS14140 PF02333 Phytase HYD28_RS14145 PF02652 L-lactate permease HYD28_RS14155 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS14155 PF08448 PAS fold HYD28_RS14165 PF00326 Prolyl oligopeptidase family HYD28_RS14165 PF07676 WD40-like Beta Propeller Repeat HYD28_RS14170 PF00480 ROK family HYD28_RS14175 PF07690 Major Facilitator Superfamily HYD28_RS14195 PF16177 Acetyl-coenzyme A synthetase N-terminus HYD28_RS14195 PF00501 AMP-binding enzyme HYD28_RS14195 PF13193 AMP-binding enzyme C-terminal domain HYD28_RS14210 PF08448 PAS fold HYD28_RS14210 PF13426 PAS domain HYD28_RS14210 PF00563 EAL domain HYD28_RS14210 PF08447 PAS fold HYD28_RS14210 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS14210 PF05231 MASE1 HYD28_RS14215 PF03441 FAD binding domain of DNA photolyase HYD28_RS14215 PF00875 DNA photolyase HYD28_RS14225 PF06983 3-demethylubiquinone-9 3-methyltransferase HYD28_RS14230 PF07690 Major Facilitator Superfamily HYD28_RS14240 PF00561 alpha/beta hydrolase fold HYD28_RS14265 PF01037 Lrp/AsnC ligand binding domain HYD28_RS14270 PF01810 LysE type translocator HYD28_RS14280 PF01292 Prokaryotic cytochrome b561 HYD28_RS14295 PF00005 ABC transporter HYD28_RS14295 PF00571 CBS domain HYD28_RS14300 PF00210 Ferritin-like domain HYD28_RS14305 PF01544 CorA-like Mg2+ transporter protein HYD28_RS14310 PF11954 Domain of unknown function (DUF3471) HYD28_RS14310 PF00144 Beta-lactamase HYD28_RS14320 PF13443 Cro/C1-type HTH DNA-binding domain HYD28_RS14345 PF13443 Cro/C1-type HTH DNA-binding domain HYD28_RS14365 PF00563 EAL domain HYD28_RS14365 PF00360 Phytochrome region HYD28_RS14365 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS14365 PF01590 GAF domain HYD28_RS14380 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS14380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS14380 PF00672 HAMP domain HYD28_RS14380 PF01627 Hpt domain HYD28_RS14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS14380 PF00072 Response regulator receiver domain HYD28_RS14385 PF12833 Helix-turn-helix domain HYD28_RS14395 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain HYD28_RS14395 PF04616 Glycosyl hydrolases family 43 HYD28_RS14420 PF06628 Catalase-related immune-responsive HYD28_RS14420 PF00199 Catalase HYD28_RS14420 PF18011 C-terminal domain found in long catalases HYD28_RS14425 PF07683 Cobalamin synthesis protein cobW C-terminal domain HYD28_RS14425 PF02492 CobW/HypB/UreG, nucleotide-binding domain HYD28_RS14445 PF00465 Iron-containing alcohol dehydrogenase HYD28_RS14455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS14455 PF03466 LysR substrate binding domain HYD28_RS14460 PF00857 Isochorismatase family HYD28_RS14475 PF01645 Conserved region in glutamate synthase HYD28_RS14475 PF13187 4Fe-4S dicluster domain HYD28_RS14480 PF04336 Acyl carrier protein phosphodiesterase HYD28_RS14510 PF10282 Lactonase, 7-bladed beta-propeller HYD28_RS14550 PF12833 Helix-turn-helix domain HYD28_RS14550 PF02311 AraC-like ligand binding domain HYD28_RS14555 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS14555 PF00593 TonB dependent receptor HYD28_RS14575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYD28_RS14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS14600 PF03466 LysR substrate binding domain HYD28_RS14605 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS14610 PF07690 Major Facilitator Superfamily HYD28_RS14615 PF01494 FAD binding domain HYD28_RS14620 PF01494 FAD binding domain HYD28_RS14625 PF05195 Aminopeptidase P, N-terminal domain HYD28_RS14625 PF00557 Metallopeptidase family M24 HYD28_RS14630 PF03695 Uncharacterised protein family (UPF0149) HYD28_RS14640 PF00873 AcrB/AcrD/AcrF family HYD28_RS14650 PF02321 Outer membrane efflux protein HYD28_RS14690 PF01627 Hpt domain HYD28_RS14690 PF00672 HAMP domain HYD28_RS14690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS14690 PF00072 Response regulator receiver domain HYD28_RS14690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HYD28_RS14690 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS14700 PF10576 Iron-sulfur binding domain of endonuclease III HYD28_RS14700 PF00730 HhH-GPD superfamily base excision DNA repair protein HYD28_RS14700 PF00633 Helix-hairpin-helix motif HYD28_RS14700 PF14815 NUDIX domain HYD28_RS14715 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS14715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS14715 PF00497 Bacterial extracellular solute-binding proteins, family 3 HYD28_RS14725 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS14725 PF00072 Response regulator receiver domain HYD28_RS14730 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS14730 PF18415 Histidine kinase receptor ArcB trans-membrane domain HYD28_RS14730 PF01627 Hpt domain HYD28_RS14730 PF00989 PAS fold HYD28_RS14730 PF00072 Response regulator receiver domain HYD28_RS14730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS14750 PF03186 CobD/Cbib protein HYD28_RS14760 PF01551 Peptidase family M23 HYD28_RS14760 PF04225 Opacity-associated protein A LysM-like domain HYD28_RS14770 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HYD28_RS14775 PF00364 Biotin-requiring enzyme HYD28_RS14775 PF02436 Conserved carboxylase domain HYD28_RS14775 PF00682 HMGL-like HYD28_RS14780 PF04277 Oxaloacetate decarboxylase, gamma chain HYD28_RS14810 PF01842 ACT domain HYD28_RS14810 PF00696 Amino acid kinase family HYD28_RS14810 PF13840 ACT domain HYD28_RS14820 PF02631 RecX family HYD28_RS14830 PF00925 GTP cyclohydrolase II HYD28_RS14840 PF01451 Low molecular weight phosphotyrosine protein phosphatase HYD28_RS14850 PF03544 Gram-negative bacterial TonB protein C-terminal HYD28_RS14855 PF04545 Sigma-70, region 4 HYD28_RS14855 PF04542 Sigma-70 region 2 HYD28_RS14865 PF07995 Glucose / Sorbosone dehydrogenase HYD28_RS14870 PF03553 Na+/H+ antiporter family HYD28_RS14875 PF00144 Beta-lactamase HYD28_RS14880 PF01418 Helix-turn-helix domain, rpiR family HYD28_RS14880 PF01380 SIS domain HYD28_RS14900 PF07075 Protein of unknown function (DUF1343) HYD28_RS14905 PF01380 SIS domain HYD28_RS14915 PF00474 Sodium:solute symporter family HYD28_RS14925 PF13378 Enolase C-terminal domain-like HYD28_RS14925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HYD28_RS14970 PF01336 OB-fold nucleic acid binding domain HYD28_RS14970 PF00152 tRNA synthetases class II (D, K and N) HYD28_RS14980 PF02272 DHHA1 domain HYD28_RS14980 PF01368 DHH family HYD28_RS14980 PF17768 RecJ OB domain HYD28_RS14985 PF10411 Disulfide bond isomerase protein N-terminus HYD28_RS14985 PF13098 Thioredoxin-like domain HYD28_RS14990 PF00589 Phage integrase family HYD28_RS14990 PF02899 Phage integrase, N-terminal SAM-like domain HYD28_RS14995 PF00258 Flavodoxin HYD28_RS15015 PF00270 DEAD/DEAH box helicase HYD28_RS15015 PF00271 Helicase conserved C-terminal domain HYD28_RS15030 PF18073 Rubredoxin metal binding domain HYD28_RS15040 PF18429 Domain of unknown function (DUF5609) HYD28_RS15050 PF01026 TatD related DNase HYD28_RS15070 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS15070 PF00072 Response regulator receiver domain HYD28_RS15070 PF09308 LuxQ, periplasmic HYD28_RS15070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS15075 PF00583 Acetyltransferase (GNAT) family HYD28_RS15095 PF00571 CBS domain HYD28_RS15095 PF00478 IMP dehydrogenase / GMP reductase domain HYD28_RS15110 PF06426 Serine acetyltransferase, N-terminal HYD28_RS15110 PF00132 Bacterial transferase hexapeptide (six repeats) HYD28_RS15125 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS15125 PF00360 Phytochrome region HYD28_RS15125 PF00563 EAL domain HYD28_RS15125 PF01590 GAF domain HYD28_RS15130 PF00675 Insulinase (Peptidase family M16) HYD28_RS15130 PF05193 Peptidase M16 inactive domain HYD28_RS15140 PF13185 GAF domain HYD28_RS15140 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS15145 PF00270 DEAD/DEAH box helicase HYD28_RS15145 PF00271 Helicase conserved C-terminal domain HYD28_RS15160 PF00072 Response regulator receiver domain HYD28_RS15160 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS15165 PF00672 HAMP domain HYD28_RS15165 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS15165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS15175 PF06280 Fn3-like domain HYD28_RS15175 PF00746 LPXTG cell wall anchor motif HYD28_RS15175 PF02225 PA domain HYD28_RS15175 PF00082 Subtilase family HYD28_RS15190 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS15190 PF17158 Membrane-associated sensor, integral membrane domain HYD28_RS15220 PF00072 Response regulator receiver domain HYD28_RS15220 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS15225 PF13756 Stimulus-sensing domain HYD28_RS15225 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS15225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS15225 PF00672 HAMP domain HYD28_RS15225 PF13755 Sensor N-terminal transmembrane domain HYD28_RS15245 PF00072 Response regulator receiver domain HYD28_RS15245 PF00158 Sigma-54 interaction domain HYD28_RS15255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS15255 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS15280 PF07969 Amidohydrolase family HYD28_RS15310 PF01258 Prokaryotic dksA/traR C4-type zinc finger HYD28_RS15315 PF00749 tRNA synthetases class I (E and Q), catalytic domain HYD28_RS15320 PF01743 Poly A polymerase head domain HYD28_RS15320 PF12626 Polymerase A arginine-rich C-terminus HYD28_RS15320 PF12627 Probable RNA and SrmB- binding site of polymerase A HYD28_RS15325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HYD28_RS15345 PF04349 Periplasmic glucan biosynthesis protein, MdoG HYD28_RS15350 PF13632 Glycosyl transferase family group 2 HYD28_RS15355 PF12849 PBP superfamily domain HYD28_RS15360 PF11808 Phosphate regulon sensor protein PhoR HYD28_RS15360 PF00989 PAS fold HYD28_RS15360 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS15360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS15365 PF00072 Response regulator receiver domain HYD28_RS15365 PF00486 Transcriptional regulatory protein, C terminal HYD28_RS15375 PF01116 Fructose-bisphosphate aldolase class-II HYD28_RS15390 PF04191 Phospholipid methyltransferase HYD28_RS15400 PF00571 CBS domain HYD28_RS15400 PF01380 SIS domain HYD28_RS15405 PF00474 Sodium:solute symporter family HYD28_RS15415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS15415 PF00072 Response regulator receiver domain HYD28_RS15415 PF09456 RcsC Alpha-Beta-Loop (ABL) HYD28_RS15415 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS15430 PF00551 Formyl transferase HYD28_RS15430 PF01842 ACT domain HYD28_RS15435 PF00196 Bacterial regulatory proteins, luxR family HYD28_RS15435 PF00072 Response regulator receiver domain HYD28_RS15450 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS15450 PF00593 TonB dependent receptor HYD28_RS15455 PF00154 recA bacterial DNA recombination protein HYD28_RS15460 PF02464 Competence-damaged protein HYD28_RS15470 PF00140 Sigma-70 factor, region 1.2 HYD28_RS15470 PF04539 Sigma-70 region 3 HYD28_RS15470 PF04545 Sigma-70, region 4 HYD28_RS15470 PF04542 Sigma-70 region 2 HYD28_RS15480 PF09335 SNARE associated Golgi protein HYD28_RS15530 PF10431 C-terminal, D2-small domain, of ClpB protein HYD28_RS15530 PF06689 ClpX C4-type zinc finger HYD28_RS15530 PF07724 AAA domain (Cdc48 subfamily) HYD28_RS15545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HYD28_RS15555 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HYD28_RS15565 PF00456 Transketolase, thiamine diphosphate binding domain HYD28_RS15565 PF02780 Transketolase, C-terminal domain HYD28_RS15565 PF02779 Transketolase, pyrimidine binding domain HYD28_RS15575 PF01219 Prokaryotic diacylglycerol kinase HYD28_RS15590 PF01928 CYTH domain HYD28_RS15600 PF01037 Lrp/AsnC ligand binding domain HYD28_RS15605 PF00171 Aldehyde dehydrogenase family HYD28_RS15605 PF01619 Proline dehydrogenase HYD28_RS15605 PF14850 DNA-binding domain of Proline dehydrogenase HYD28_RS15605 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HYD28_RS15610 PF01966 HD domain HYD28_RS15610 PF11871 Domain of unknown function (DUF3391) HYD28_RS15620 PF01471 Putative peptidoglycan binding domain HYD28_RS15620 PF13401 AAA domain HYD28_RS15625 PF01966 HD domain HYD28_RS15625 PF01743 Poly A polymerase head domain HYD28_RS15625 PF12627 Probable RNA and SrmB- binding site of polymerase A HYD28_RS15650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS15655 PF00873 AcrB/AcrD/AcrF family HYD28_RS15660 PF01625 Peptide methionine sulfoxide reductase HYD28_RS15665 PF00593 TonB dependent receptor HYD28_RS15665 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS15685 PF02558 Ketopantoate reductase PanE/ApbA HYD28_RS15685 PF08546 Ketopantoate reductase PanE/ApbA C terminal HYD28_RS15690 PF02926 THUMP domain HYD28_RS15690 PF02568 Thiamine biosynthesis protein (ThiI) HYD28_RS15695 PF08360 QacR-like protein, C-terminal region HYD28_RS15695 PF00440 Bacterial regulatory proteins, tetR family HYD28_RS15740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HYD28_RS15740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HYD28_RS15745 PF00696 Amino acid kinase family HYD28_RS15750 PF02774 Semialdehyde dehydrogenase, dimerisation domain HYD28_RS15750 PF01118 Semialdehyde dehydrogenase, NAD binding domain HYD28_RS15755 PF07687 Peptidase dimerisation domain HYD28_RS15755 PF01546 Peptidase family M20/M25/M40 HYD28_RS15760 PF00282 Pyridoxal-dependent decarboxylase conserved domain HYD28_RS15765 PF00563 EAL domain HYD28_RS15765 PF08495 FIST N domain HYD28_RS15765 PF10442 FIST C domain HYD28_RS15765 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS15770 PF02390 Putative methyltransferase HYD28_RS15775 PF01061 ABC-2 type transporter HYD28_RS15780 PF00005 ABC transporter HYD28_RS15785 PF02441 Flavoprotein HYD28_RS15790 PF08245 Mur ligase middle domain HYD28_RS15790 PF02875 Mur ligase family, glutamate ligase domain HYD28_RS15790 PF01225 Mur ligase family, catalytic domain HYD28_RS15800 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HYD28_RS15805 PF02152 Dihydroneopterin aldolase HYD28_RS15835 PF11849 Domain of unknown function (DUF3369) HYD28_RS15840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYD28_RS15840 PF03466 LysR substrate binding domain HYD28_RS15860 PF03748 Flagellar basal body-associated protein FliL HYD28_RS15865 PF01694 Rhomboid family HYD28_RS15865 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HYD28_RS15880 PF00155 Aminotransferase class I and II HYD28_RS15890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HYD28_RS15905 PF13580 SIS domain HYD28_RS15915 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HYD28_RS15925 PF07027 Protein of unknown function (DUF1318) HYD28_RS15930 PF13617 YnbE-like lipoprotein HYD28_RS15960 PF14437 MafB19-like deaminase HYD28_RS15965 PF00294 pfkB family carbohydrate kinase HYD28_RS15975 PF04542 Sigma-70 region 2 HYD28_RS15975 PF04545 Sigma-70, region 4 HYD28_RS15975 PF00140 Sigma-70 factor, region 1.2 HYD28_RS15980 PF18075 FtsX extracellular domain HYD28_RS15985 PF00005 ABC transporter HYD28_RS15990 PF02881 SRP54-type protein, helical bundle domain HYD28_RS15990 PF00448 SRP54-type protein, GTPase domain HYD28_RS16010 PF01807 CHC2 zinc finger HYD28_RS16010 PF10410 DnaB-helicase binding domain of primase HYD28_RS16010 PF08278 DNA primase DnaG DnaB-binding HYD28_RS16010 PF08275 DNA primase catalytic core, N-terminal domain HYD28_RS16015 PF03979 Sigma-70 factor, region 1.1 HYD28_RS16015 PF04542 Sigma-70 region 2 HYD28_RS16015 PF00140 Sigma-70 factor, region 1.2 HYD28_RS16015 PF04546 Sigma-70, non-essential region HYD28_RS16015 PF04539 Sigma-70 region 3 HYD28_RS16015 PF04545 Sigma-70, region 4 HYD28_RS16025 PF01207 Dihydrouridine synthase (Dus) HYD28_RS16030 PF02954 Bacterial regulatory protein, Fis family HYD28_RS16045 PF02844 Phosphoribosylglycinamide synthetase, N domain HYD28_RS16045 PF02843 Phosphoribosylglycinamide synthetase, C domain HYD28_RS16045 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HYD28_RS16050 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS16050 PF00563 EAL domain HYD28_RS16050 PF01590 GAF domain HYD28_RS16050 PF00989 PAS fold HYD28_RS16060 PF00563 EAL domain HYD28_RS16060 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS16060 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS16070 PF00850 Histone deacetylase domain HYD28_RS16075 PF00144 Beta-lactamase HYD28_RS16085 PF01810 LysE type translocator HYD28_RS16110 PF07676 WD40-like Beta Propeller Repeat HYD28_RS16125 PF01479 S4 domain HYD28_RS16125 PF00849 RNA pseudouridylate synthase HYD28_RS16130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS16130 PF17200 Single Cache domain 2 HYD28_RS16130 PF00672 HAMP domain HYD28_RS16160 PF07715 TonB-dependent Receptor Plug Domain HYD28_RS16160 PF00593 TonB dependent receptor HYD28_RS16165 PF13181 Tetratricopeptide repeat HYD28_RS16170 PF00581 Rhodanese-like domain HYD28_RS16175 PF05159 Capsule polysaccharide biosynthesis protein HYD28_RS16180 PF01467 Cytidylyltransferase-like HYD28_RS16185 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase HYD28_RS16200 PF00563 EAL domain HYD28_RS16200 PF03707 Bacterial signalling protein N terminal repeat HYD28_RS16200 PF00990 Diguanylate cyclase, GGDEF domain HYD28_RS16210 PF01259 SAICAR synthetase HYD28_RS16220 PF00005 ABC transporter HYD28_RS16235 PF02321 Outer membrane efflux protein HYD28_RS16240 PF00873 AcrB/AcrD/AcrF family HYD28_RS16245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYD28_RS16250 PF06827 Zinc finger found in FPG and IleRS HYD28_RS16250 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HYD28_RS16250 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HYD28_RS16260 PF02833 DHHA2 domain HYD28_RS16260 PF01368 DHH family HYD28_RS16265 PF08032 RNA 2'-O ribose methyltransferase substrate binding HYD28_RS16265 PF00588 SpoU rRNA Methylase family HYD28_RS16270 PF00773 RNB domain HYD28_RS16270 PF08206 Ribonuclease B OB domain HYD28_RS16270 PF08461 Ribonuclease R winged-helix domain HYD28_RS16270 PF00575 S1 RNA binding domain HYD28_RS16270 PF17876 Cold shock domain HYD28_RS16295 PF03009 Glycerophosphoryl diester phosphodiesterase family HYD28_RS16300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYD28_RS16300 PF00672 HAMP domain HYD28_RS16300 PF02743 Cache domain HYD28_RS16305 PF08331 Domain of unknown function (DUF1730) HYD28_RS16310 PF00072 Response regulator receiver domain HYD28_RS16315 PF00989 PAS fold HYD28_RS16315 PF00512 His Kinase A (phospho-acceptor) domain HYD28_RS16315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS16320 PF00583 Acetyltransferase (GNAT) family HYD28_RS16325 PF00255 Glutathione peroxidase HYD28_RS16335 PF13417 Glutathione S-transferase, N-terminal domain HYD28_RS16335 PF00043 Glutathione S-transferase, C-terminal domain HYD28_RS16350 PF11838 ERAP1-like C-terminal domain HYD28_RS16350 PF01433 Peptidase family M1 domain HYD28_RS16365 PF00485 Phosphoribulokinase / Uridine kinase family HYD28_RS16370 PF01931 Protein of unknown function DUF84 HYD28_RS16375 PF13419 Haloacid dehalogenase-like hydrolase HYD28_RS16385 PF12327 FtsZ family, C-terminal domain HYD28_RS16385 PF00091 Tubulin/FtsZ family, GTPase domain HYD28_RS16390 PF02491 SHS2 domain inserted in FTSA HYD28_RS16395 PF08478 POTRA domain, FtsQ-type HYD28_RS16395 PF03799 Cell division protein FtsQ HYD28_RS16430 PF08245 Mur ligase middle domain HYD28_RS16430 PF02875 Mur ligase family, glutamate ligase domain HYD28_RS16430 PF01225 Mur ligase family, catalytic domain HYD28_RS16435 PF02875 Mur ligase family, glutamate ligase domain HYD28_RS16435 PF01225 Mur ligase family, catalytic domain HYD28_RS16435 PF08245 Mur ligase middle domain HYD28_RS16440 PF03717 Penicillin-binding Protein dimerisation domain HYD28_RS16440 PF00905 Penicillin binding protein transpeptidase domain HYD28_RS16445 PF04999 Cell division protein FtsL HYD28_RS16480 PF13409 Glutathione S-transferase, N-terminal domain HYD28_RS16485 PF02678 Pirin HYD28_RS16485 PF05726 Pirin C-terminal cupin domain HYD28_RS16490 PF03631 Virulence factor BrkB HYD28_RS16500 PF02416 mttA/Hcf106 family HYD28_RS16510 PF08220 DeoR-like helix-turn-helix domain HYD28_RS16510 PF00455 DeoR C terminal sensor domain HYD28_RS16515 PF07690 Major Facilitator Superfamily HYD28_RS16530 PF01979 Amidohydrolase family HYD28_RS16535 PF00480 ROK family HYD28_RS16540 PF01380 SIS domain HYD28_RS16545 PF08013 Tagatose 6 phosphate kinase HYD28_RS16550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HYD28_RS16560 PF10459 Peptidase S46 HYD28_RS16570 PF00196 Bacterial regulatory proteins, luxR family HYD28_RS16570 PF00072 Response regulator receiver domain HYD28_RS16580 PF07730 Histidine kinase HYD28_RS16580 PF05231 MASE1 HYD28_RS16580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYD28_RS16590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HYD28_RS16595 PF04348 LppC putative lipoprotein