        recF NONE
        gyrB    6242 ..    6260 + -13.1  -5.26119   CGACCCTCATAGAAA             CCCCGGC CTGGC GCCGGGG             TTTTCTTTTTGCGCC 100 54
JJQ57_RS00035    9939 ..    9965 + -17.3  -4.63218   TCCTGTAGTGAAAAA         GGCCCGGTGTC GCGAG GACGCCGGGCC         TTTTCTTCGAGGCGG 100 33
JJQ57_RS00050   13757 ..   13785 +  -3.7  -3.73072   CTTCTTCCTGGCGTA        CAATGCGCGTTCG AGT CGAGCGAGGAGTG        TTTCGTGGAGAAATT  56 137
JJQ57_RS00055   14684 ..   14699 + -10.4   -4.8048   TGGTACTGAGGAAAG              GGCGTC GGAA GACGCC               TTTTTCATATCCGGG 100 32
JJQ57_RS00060   15117 ..   15137 +  -8.9  -2.54896   GGCTAGAATGCGCGC            CGCTCGGCA TGG TGCCGGGCA            TGGGTTCCCTCACCC  53 114
JJQ57_RS00065   15851 ..   15884 + -22.6  -3.34013   CGAGGCAATCTGGAG     GAAGGGCGCAACGG CCGTGA CCGTTGCGCCCTTC      TTCGTTCAGGAGGTG 100 48
JJQ57_RS00100   22314 ..   22345 + -20.2  -3.85698   GTGCAGAATCCCTGA      CTCGAAACCCCCGC CTCG GCGGGGGTTTCGCG       TTTCTGGGGGAAGGA 100 26
        dprA NONE
JJQ57_RS00110   24529 ..   24544 + -10.4  -2.81642   TCGAGCACCCGCCGC              GCCACG TTCT CGTGGC               TGTAGTCGATGGTCT  59 420
        hemF NONE
        aroE   27121 ..   27149 +  -5.4  -3.71378   GTCTGAGTTGTCAGG       CAGCATTTGAGAC GTAC GTCTCAAAT-CGG        TTTCCATCTGACATG  58 35
JJQ57_RS00130 NONE
JJQ57_RS00135 NONE
JJQ57_RS00140   30062 ..   30083 +  -5.8  -3.21099   CGCACCGACATCGCC           GGC-GGCGC CCTGA GCGTCAGCC           TTCGTAGTGCAGGCG  51 13
JJQ57_RS00160 NONE
JJQ57_RS00165   35724 ..   35747 +  -7.4  -3.56544   CTGCTCGCGCTCCTG          GGCGCGCCGCA GCT TGCGG-GTGTC          TTCGTTGTTGCTGGT  60 247
JJQ57_RS00190   39689 ..   39699 +  -2.4  -2.66733   GATTTGCTGCACTTT                 TCCG GCT CGGC                 TAGTGTCCATTGAAC  38 49
JJQ57_RS00195   40075 ..   40097 + -12.6  -2.63631   CAGGCTATGAGGGCG           GCGTGCCTCC ATG GGCGGCGCGC           TCGTCTCAACCTTGC  67 119
JJQ57_RS00200   40420 ..   40447 +   -17  -5.04249   GACGAGCAGTATCCG        GGGCCGGCTTTC CCAT GGGAGCCGGCCC         TTTCTTTTTTGCCGC 100 53
       tpsB2 NONE
JJQ57_RS00210 NONE
JJQ57_RS00215   54680 ..   54690 +  -3.2  -3.57144   GTTTAGCGAGTTATC                 CGCT TTG AGTG                 TTTCAGCGTGGGGGC  51 201
JJQ57_RS00220   55382 ..   55399 + -11.3  -3.36515   CGGGTCGCTCGCCGG             GGCAACG CATG CGTTGCC              TGTTTCCGACTCGCC  69 233
JJQ57_RS00225   58368 ..   58398 + -11.8  -3.29937   GTTAGTTTTTCAGAG       GATGGGTGGGAGTT TAA ATCTCCCGCCCCTC       TATCTTTAAATGTTA  72 92
JJQ57_RS00240   61127 ..   61152 +  -5.4  -3.48924   CTTCACGCGGCAAAG         GGCGATTGGCT CAGCC AGCCAC-CGCC         TTGTCTCCGACCTCG  53 52
        exoT   64328 ..   64350 + -15.6  -4.54727   GGTCGACGGCAGAGA           CGGACACTCC CAA GGGGTGTCCG           TTTTCATTTGCGCCG 100 43
JJQ57_RS00255 NONE
JJQ57_RS00260 NONE
JJQ57_RS00265   66965 ..   66997 +  -6.2  -3.52896   AGTCAGGGGAAATCC     TTGCCACCGCCC-CG GTGA TGCGGGCGATGGCGG      TTGTCTCCATCATCG  55 452
JJQ57_RS00280 NONE
JJQ57_RS00285   70171 ..   70185 +  -2.2  -4.60053   TTCAGGATGTTTCAT               TAATTT TGT AGATTA               TTGTTTTTCCTTTGT  68 368
        asnB   72297 ..   72332 + -13.3  -3.03124   GAGCGTGATGCGGGG   CG-TGGCGGGCCCGGGC TGCT GTCCG-GCCCGCCGGCG    TCTTCAGGCGTCGGG  71 39
JJQ57_RS00315   76077 ..   76092 +  -8.2  -2.78384   AGCCGCTGATCGAGG              CGTCCC CTGC GGGGCG               TCTCGTGGAGACCGA  54 56
JJQ57_RS00320 NONE
JJQ57_RS00325 NONE
JJQ57_RS00330   77855 ..   77867 +  -7.7  -3.25823   GCCGTCATAGACCAC                CTGCT GGT AGCAG                TTGATCTGCACCGGC  56 184
JJQ57_RS00345 NONE
        prlC NONE
JJQ57_RS00370   84507 ..   84526 +    -8  -3.55622   CGGGGCCCGGTGCGA            TACTGTAT CCAT ATACAGTA             TTTCGCCGGGTTCCC  62 76
JJQ57_RS00375   86094 ..   86108 +   -10  -3.96624   GGTGCGCGGTACGCC               GACCTG CTG CAGGTC               TTTCTCGTAGGCCTG  77 516
        tssA NONE
        tssB NONE
        tssC  106727 ..  106749 +   -17  -3.07113   AGGCATTCAACGACA           GCGCCTGCCA TGG TGGCGGGCGC           TTGCATAGCGTAGTG  88 40
         hcp  107416 ..  107454 + -18.8  -3.35813   GTACTGAATTCCACC   GGGTCGTCCGTCGCGTCC GCC GGGCGCCATGGCCGACCC   TTCATTCGCATCCGG  93 165
        tagJ NONE
        tssE NONE
        tssF NONE
        tssG NONE
        tssH NONE
      vgrG1a  116532 ..  116558 +  -4.4  -3.53811   CTTGAGGGCCCTGGC         GAGTTCCGGG TCGGTCT CCTCGAACTC         TTTCCCGGCGATGCC  52 212
      vgrG1b NONE
JJQ57_RS00515 NONE
JJQ57_RS00520 NONE
JJQ57_RS00525 NONE
JJQ57_RS00530 NONE
JJQ57_RS00535 NONE
JJQ57_RS00540  127297 ..  127315 +    -8  -4.19238   GGTCAGGTCATGGCC             GCTGGCGC GGT GCGCCGGA             TTTTCCCATTCGACG  72 60
JJQ57_RS00545  128451 ..  128477 +  -3.7  -3.01712   GACGACCTCTGGGAA        GC--CCCGTTCCG GGG CTGAACGGGTCGC        TATTACAAGAAAAAA  45 110
JJQ57_RS00550  130273 ..  130296 +  -5.2  -3.14463   GGTGGCGTCGAGCAT          GTTCTCCACC GCAT GGTGGACGGC           TTCGTCCAGCCGGTT  49 150
        coxB NONE
        ctaD NONE
JJQ57_RS00570 NONE
JJQ57_RS00575  135358 ..  135372 +  -5.6  -3.05844   GGGGGAATCAGAAAT               GCCAGG GCG CGTGGC               TGTTCAGCTCGCCGC  49 49
JJQ57_RS00585 NONE
JJQ57_RS00590 NONE
JJQ57_RS00595 NONE
JJQ57_RS00600  138979 ..  138992 +  -3.7  -3.54653   GGTGGACCACTATCT               GCCGC TGAA GCTGC                TTCTCTGATCCCACT  53 4
        senC  139645 ..  139661 +  -6.5  -3.19192   AACTGCCCGGCGTGC              TCAAGCC GCA GGCCTGA              TTCCCTTCCCTCCCC  53 9
JJQ57_RS00615  140931 ..  140946 +  -3.2  -3.67175   GATATCACTCGAGGC              CTTGCC AGTT GACAAG               TTCCTTTTAAGAACT  51 198
JJQ57_RS00620 NONE
JJQ57_RS00625  142423 ..  142444 +  -9.3  -3.16921   GCGCCCTTCTCCCGG           CTGCGGCCC GCGC GTGCCGCGG            TTCCTGGCCATTCGT  61 93
JJQ57_RS00630 NONE
JJQ57_RS00635  144697 ..  144718 +  -6.5  -3.72695   GGGTTCCAACCCGGG           ACCGTCGCGG CGC CCG-GACGGC           TTTCGTCCGCGGCCT  62 53
JJQ57_RS00640  145545 ..  145559 + -11.4  -2.78463   CTGGCAGGCGGTGGT               GGCTGG TGG CCAGCC               TATAGTGAAGCGGGT  63 66
JJQ57_RS00645 NONE
JJQ57_RS00670 NONE
JJQ57_RS00675  149670 ..  149688 + -17.4  -4.86731   ACCTTGCCTGAAGAA             GCCCGGCC ATT GGCCGGGC             TTTTCTTTGGAGGGC 100 45
        bauR  155620 ..  155634 +  -5.6  -2.82775   TGACGCGAGCTTCGG               CCGTCC GCC GAACGG               TGCCTTTTCTCTAAC  48 55
JJQ57_RS00710 NONE
JJQ57_RS00715 NONE
JJQ57_RS00720  161822 ..  161836 +  -3.6  -4.28067   GGCAGGTTCTTCGAT               TAGTTG TTT TAACTA               TTTATATATTCTTCG  64 45
        ahpC  162615 ..  162643 +  -7.3  -2.64274   CCAGCCAACGCGCCG        TGCAGGGCGGATG TCC CATCCGCCGGGGA        TACGTTTGCCCGAAT  51 110
        ahpF  164268 ..  164295 + -19.8   -4.4078   CCGTCGAACCAGGGA        CGCCCGGAGCGC GAAA GCGCCCCGGGCG         TTTTCGTTGGCGCGA 100 53
JJQ57_RS00740  167033 ..  167057 +   -10  -2.53995   TGAGGCGGGCGCCGA          CGGAGGAGGC GCCAG GCTTCCTCTG          TCGGTTCGCATAGGT  59 38
JJQ57_RS00745  168536 ..  168546 +  -4.6  -3.50853   TGTGGGCGACGTAGC                 CGTC CCA GGCG                 TTCTCGTTGGACGCG  52 382
JJQ57_RS00765 NONE
JJQ57_RS00770  172776 ..  172796 +    -6   -3.6502   CTGAGCCGCCCGTCG            CGCGCGGG AGCGG CTCGCGGG            TTTCCCTCGGGCCTG  57 37
JJQ57_RS00775  173812 ..  173860 + -12.1  -3.78775   TGGATGCGCGCCTGG TGAAGTGAGGGCGGCGCGCCGGG CAA CCCGGCGCGCGACCCGCAAGGCG TTTCGTCGTCGCCGG  78 18
JJQ57_RS00780 NONE
JJQ57_RS00785  175627 ..  175637 +  -2.4  -3.30443   GCGGGGTGAGGTAAA                 GCCG GCG CCGC                 TTCGTGTAGTGCTCA  45 99
JJQ57_RS00790  178191 ..  178239 +  -6.7  -3.41878   GCCGCGGTGCTGCCC GGCGCAGGATCGGTGAATCGTT CCGTTC GACGATGCTCC-ATCCAGTGCC TTCTCCCTTCAGGGA  57 129
        pcaQ  179285 ..  179298 +  -5.3  -2.87211   TGCACTGATAAAGCA               TAACC AAAT GGTTA                TGTATGGGGCCGGAT  46 33
        pcaH NONE
        pcaG  180880 ..  180894 +  -7.8  -2.54193   CCGACAGTACTACAG               TCGGAG GCG CTCCGG               TCAATTGCGATGATC  50 158
JJQ57_RS00810  181910 ..  181926 + -15.1  -3.05993   CAATTCTGGGAGTTT              CCGGCCG GAT CGGCCGG              TATCTGTATGGATCG  81 133
        triA NONE
        triB NONE
        triC  187305 ..  187327 + -16.3  -3.14132   GGCCATCCGCCCCGA           CGCCGGGCA GGGTA TGCCCGGCG           TTGCTACGGCGACGG  86 113
JJQ57_RS00830 NONE
JJQ57_RS00835  188732 ..  188752 + -15.5  -5.86332   GGTACCCTGTCCTTG            CGCCGCATA TGA TATGCGGCG            TTTTTTTTGCCTTCC 100 102
JJQ57_RS00840  190785 ..  190816 + -10.8  -3.64716   GAGCCGGTAGTTCAT      CCCGGTCTCGCGCTG GAA CAG-GCGCGACAGGG      TCTTTTCCGAGGTGC  73 234
JJQ57_RS00850  193556 ..  193567 +  -2.2  -4.63527   AAGGCAGAAACTGTC                CTTG GGGT CAGG                 TTTTTGCCGTCGTAG  70 485
JJQ57_RS00860  194770 ..  194787 +  -3.3  -4.56597   GAGCGGCAGGAATAA             GCTGATC ACCT GGACAGC              TTTTTGCAGAAGCCG  69 191
JJQ57_RS00865 NONE
JJQ57_RS00870 NONE
JJQ57_RS00875  198061 ..  198071 +  -6.8   -3.4759   TAGCTCTGGCCGTGG                 CGCT GGG AGCG                 TTCGTTCTCCTCCCT  56 480
JJQ57_RS00945  212881 ..  212914 +  -5.2  -3.07816   CAGCCACGACCTGCC     GCGC-GGTTCGGC GATCTCGCG GCCGCGCCAGCGC     TTGCCTGGGTGGCGG  47 428
JJQ57_RS00965  218278 ..  218290 +  -7.7  -3.73106   TATTCAGATACAAAA                TTGGC ACT GCCAA                TTCTTCCAGTTTTCC  65 246
JJQ57_RS00970 NONE
JJQ57_RS00975  220647 ..  220670 +  -5.2  -3.14132   GACACGCTGGTAGGC          CAGGGTGATGC GCT GCGGC-CCCTG          TTCGTAGCCCAGGGC  49 504
JJQ57_RS00985  222552 ..  222573 + -18.7  -3.04792   GAGGAAGGGAAACCG           CGCGGCGGC TCAG GCCGCCGCG            TGTTGCGCCTGGTCC  91 40
JJQ57_RS00995 NONE
JJQ57_RS01000  227146 ..  227156 +  -2.4  -2.78384   TCCGGAAGGCATGAC                 GGAC CCG GCCC                 TCTCCTCGCCGGGGA  39 27
JJQ57_RS01005  228208 ..  228242 + -20.2  -3.89055   GTTCCGGCGAATAGC     TAGCAGAACTGCGACA TGC TGTCGCAGTTCTGCCA     TTTCTCCGCGTCTAT 100 122
JJQ57_RS01010 NONE
JJQ57_RS01015 NONE
JJQ57_RS01020  231719 ..  231736 + -14.1   -5.0925   CTGAATCCACCAGAA             CCCCGGC TCAG GCCGGGG              TTTTTCGTTTTCGCG 100 48
JJQ57_RS01025 NONE
JJQ57_RS01030 NONE
JJQ57_RS01035  234049 ..  234080 +  -2.9  -5.45652   GCGGGCAACGGTTTC      GACCGCTCCGATCC GGGCA GGGGAG-AGCGGTC      TTTTTTATTCCGGAT  91 71
JJQ57_RS01045 NONE
        mdcA NONE
JJQ57_RS01055 NONE
JJQ57_RS01060 NONE
JJQ57_RS01065 NONE
        mdcE  239789 ..  239806 +  -5.5  -2.52464   GCGCGGGTGCGCCGG             CTGCTGC GCGA GCAGTGG              TGAATTCAGGAGCGA  45 5
JJQ57_RS01075  240512 ..  240523 +  -2.2  -3.07962   GTCGCGGAGGTCGAG                GCAT GAGC GTGC                 TGTTCGCCTATCCCG  41 20
        mdcH NONE
        madL NONE
        madM NONE
JJQ57_RS01105 NONE
JJQ57_RS01110 NONE
JJQ57_RS01115  249762 ..  249789 +  -2.4  -3.59262   CCCATAACGACGACG        CGGCGCCTGGCG ACCG CGCGCGGAACCG         TTTCGGCCTCTGGCC  49 93
JJQ57_RS01120  251092 ..  251105 +  -5.2  -3.23216   CCTCCAGGCCGGAGA               GGCC CAGGCC GGCC                TTGATGGTGGTCGGC  51 201
JJQ57_RS01135  253451 ..  253465 +  -8.6  -3.18033   GCTTGCTAACGTTCT               GTTCGA TTA TCGAAC               TGTTAATCGATTATC  58 65
JJQ57_RS01140 NONE
JJQ57_RS01145 NONE
        pcaF NONE
JJQ57_RS01155 NONE
JJQ57_RS01160 NONE
        pcaD NONE
        pcaC  260496 ..  260506 +  -4.6  -3.28712   CGGTAGGGCGAATGG                 CGTC GCA GGCG                 TTATCCGCCGAGGCG  50 59
JJQ57_RS01175  261580 ..  261600 + -13.3  -3.14002   GAGCTTGCTCGTTCG            CTGATGCCG TTT CGGCATCGG            TATGTTCGATATTCT  73 74
JJQ57_RS01180  262610 ..  262620 +  -8.2  -3.29511   GGGTGGGGCGAATAA                 CGCC ACC GGCG                 TTATCCGCCGATACA  60 80
JJQ57_RS01190  265264 ..  265282 + -10.3  -4.20516   CCTTTCTCGACATCG             GCGTTCG AATAG CGAACGC             TTTCTTGCCTGCCAC  81 62
JJQ57_RS01195 NONE
JJQ57_RS01200  267363 ..  267377 +  -5.6  -3.68351   TGTAGCGCCACCGCG               CAGGCA GGT TGCCCG               TTTGCATAATGGAAC  60 36
JJQ57_RS01205  268835 ..  268853 +  -2.2  -3.33261   GTAGCGCGCGGAGAA             CAGCGCGG AAA CGGTGCGG             TTATCGAGCTTGCCG  44 480
JJQ57_RS01220  273497 ..  273525 +  -2.4  -3.14132   GCCGGGCCAAGCTGT       GAG-AATTGTCGG GGCT CCGGCAGCTGCTC        TTCCTACAGCCGGGC  43 24
JJQ57_RS01225  274261 ..  274297 + -10.9  -3.05816   ACATCCGTGCTTGAC   TGCCGTCCCCTCTCCC CTTGGC GGGAGAGGGGG-GCCA    TTCAGTCGCCCATGC  66 27
JJQ57_RS01250  280064 ..  280094 +    -3  -2.59564   TCGGCGGAGAGGACA       TGGCGGCGGCTCGC AAC GGGAACAGCCGCGG       ATTATCGCGTGAGCC  39 468
JJQ57_RS01300  288095 ..  288111 +  -3.6  -3.73953   TATCAGGCTGGCAAT              GCAGCA GATAG TGCAGC              TTTCGTGCGCCTAGT  54 342
        gabD  300208 ..  300222 +  -5.6   -3.3482   AGTCGATCATCGCAT               GCTGCC TTG GGGAGC               TTCCTTCCCGCCTTC  52 196
        gabT  301613 ..  301637 + -10.8  -5.24129   CGGGCCTTTCTTTCA         GAGGCTTCACG GAAA CG-GAAGCCTC          TTTTTTCTGCCAGGG 100 76
JJQ57_RS01350  303286 ..  303303 +  -8.3  -3.05384   CAACAGGTCCAACGC             CGGGTCG ATGT CGTCCCG              TTCGATGCAGCCGAA  55 232
JJQ57_RS01360 NONE
JJQ57_RS01365  305641 ..  305662 + -10.8  -2.77899   TCAAGCCACTGGAGC           GCGGCGCC CACTGA GGCGTCGC            TCGTTCGTCCGAAGG  63 12
JJQ57_RS01370  306356 ..  306370 +  -5.6  -3.18264   CGGCTGGGCACGATC               CTGCAC GCA GAGCAG               TTCGTCGCTGAACAG  49 409
JJQ57_RS01395  310534 ..  310555 + -10.9  -2.78384   GAGCGTTACTTGCGA           TCCG-CAGCG ATG CGCTGGCGGA           TGTGATCGGCGCGGG  63 75
JJQ57_RS01410  313339 ..  313366 +  -3.3  -3.71848   CTCGTAAACCTCGCC        GGGCGAG-CCGA TCTGC TCGATCACGCCC        TTGTTCATCACCACG  53 366
JJQ57_RS01445  321055 ..  321086 + -23.8  -3.57144   TGCGTCAGCCGCCTC      TGCAACGCGCCGGC TCCT GCCGGCGCGTTGCG       TTTCGGCGTCGCCAA 100 62
JJQ57_RS01450  322640 ..  322660 + -16.1  -4.15044   CGGAATGAACCCACG            GCGCCGGGC GGC GCCCGGTGC            TTTCTTCCCACCACA 100 33
        speB  323623 ..  323664 +   -13  -3.59262   CTGCCTGCTTGCCGA GTC-GGCCGCGCGAAGCGCC TGAC GGCGTTCCGC-CGGCCCGGC TTTGGCGCTATAACG  77 4
JJQ57_RS01460  324683 ..  324702 +  -5.6  -4.12532   ACTGGCTGGAGCCTT            TCCCTGCC GTTC GGCGGGCA             TTTCTGTATCGCCGC  67 49
JJQ57_RS01465  325748 ..  325763 +  -3.2  -4.36914   TCGTGGGCTGACCGC              TGGGCA AACG TGTCCG               TTTTGTCGACGGCGC  64 30
JJQ57_RS01470  327762 ..  327788 + -23.8  -5.26875   GCCGGACAGGAAAAA         GCCCGCGTCCTC CTG GAGGACGCGGGC         TTTTTTCATTCAGGG 100 47
JJQ57_RS01500  334577 ..  334595 +  -3.9  -3.91897   CGGCTGTTGGGGCCG            GACTCTCA ACCC TGAG-GTC             TTTATGACTACCAAG  58 44
JJQ57_RS01505  335960 ..  336000 + -22.5  -3.08679   GCTTTCCGTTTGATC  CTGACCGGGGGCGGCCGGC GTG GTCCGCCGCTCCCGGACAG  TCTTGAATAGAAGAG 100 28
JJQ57_RS01510  337443 ..  337480 + -15.5  -2.71011   GCGTTGGCCAGGCTC   ACCGGGTGGTGACGCGA TCGG TTGCGCCACCGCCCGGA    TACTTCAACAAAAAT  78 75
JJQ57_RS01515  338911 ..  338928 + -10.5  -3.40403   AGCTCACTCATGTTT             CCCGGCG GAAT CGTCGGG              TTGTCATGAAACCCG  68 324
JJQ57_RS01520 NONE
        potA NONE
JJQ57_RS01530 NONE
JJQ57_RS01535  343218 ..  343235 + -12.7   -4.8622   CCGCCGAAAAGAAAA             GGCCACC TGCG GGTGGCC              TTTTTCATTGGCGCG 100 46
JJQ57_RS01545  347199 ..  347215 +  -6.5  -3.22298   TAGGTGTTGTAGATC              GGCCAGA ACT TCTCGCC              TTCCTGGTCGGTGAG  53 299
JJQ57_RS01560  349532 ..  349551 + -11.4  -3.29471   GGCGTGGCTCGCTGG            CGGTCTGC CGCG GCAGGCCG             TTGCTGTGCTGGAGC  68 416
JJQ57_RS01570  350667 ..  350697 +  -6.1  -3.21099   CTCTCCTGAACCCTC      GG-C-GGGGTCGCCG CCT CAGTGACCCCAGACC      TTGATCGTGCCGCGC  51 32
JJQ57_RS01580  351990 ..  352027 +  -6.8   -2.5806   CGGCCTCGACGCCGG   CGGCTGAACGCTCAGC GCCGCA GCGGCGCGGTCAGGCG    GTTCTCCAGGGCTTT  48 19
JJQ57_RS01595  354280 ..  354297 + -12.7  -4.98531   ACGGAAACGAAAAAA             GGAGGCC GCTG GGCCTCC              TTTTTCCTTTCCGCC 100 40
JJQ57_RS01605  357169 ..  357186 + -14.1  -3.49777   GTTTCGCAACGCAGA             GGGCCGG TCAT CCGGCCC              TTCTCGTCTGTGGCG  79 44
JJQ57_RS01610  357914 ..  357935 + -13.7  -3.05384   GTGCTCTGAACCGCT           G-CGGCCGCC GGG GGCGGCCGAC           TTCCCTAGCGCCGGC  75 32
JJQ57_RS01615  359018 ..  359035 +  -3.3  -3.16564   TTAAGCGCCGATTAA             GCCTGGT TTCA GCAAGGC              TTCGTAGCCTGGACC  44 48
JJQ57_RS01620  359445 ..  359474 + -22.9  -3.66178   GGCCCTGAATCGAAA       CGGCCCGCCTCTC TTCC GGGAGGCGGGCCG        TTTCGCGTTCCGACC 100 41
JJQ57_RS01655  367597 ..  367622 +  -4.7  -3.14878   CGAATAGCCCGCCTG         GTTGCCTTCGCT GTG GGCGAA-GCGGC         TGTTGGCTTCGGCGA  47 103
JJQ57_RS01665  370553 ..  370563 +  -6.8  -3.76224   TCGACGGCGGCCAGG                 GCTG GAT CAGC                 TTTCGTCGCTGAGGC  62 62
        ilvA  373493 ..  373506 +  -2.4  -2.93723   ACGGGCTGCTAAGCT               TCAC GGGCAG GTGA                TCTCCTTCCTCGGGA  40 60
JJQ57_RS01685  374068 ..  374081 +  -9.5  -3.48276   ACGAAATGGACTTCA               CCGGC CTTC GCCGG                TTCTGTAGGAACGCA  65 48
JJQ57_RS01690 NONE
JJQ57_RS01695 NONE
JJQ57_RS01710 NONE
        ptsP  380737 ..  380772 +  -2.3  -2.71712   GTCCAGCCCTGATTT    CCCGCGCGCCGGACG CTTCGT CGTGCGGCGCTTACG     CTTTCCCCGCAAGCG  39 29
JJQ57_RS01720  382259 ..  382271 +  -2.6  -3.40403   CAGCAGGCGCGGTGG                CCCT ACGCG GGGG                TTGTAGTGCCAGAGC  46 395
JJQ57_RS01730 NONE
JJQ57_RS01735  384360 ..  384388 + -12.4  -4.25104   GCCTACCGCCGCGAC       GCGGCGCA-GCCG AAGG CGGCCTGAGCCGC        TTTTCGTGCCCGGGG  91 2
JJQ57_RS01740  385663 ..  385679 +    -5  -3.60296   ACGAAACGGTAGCCC              GCGGCG AGCAG CGGCGC              TTTCCACTCGGGGTC  52 305
JJQ57_RS01760 NONE
JJQ57_RS01770 NONE
JJQ57_RS01775  393102 ..  393125 +   -11  -4.05446   GGCCTGGAGTCCGCC          GGCGCGAG TGTTTATC CTCGCGCC           TTTGTCCTTCCACGA  82 45
JJQ57_RS01780  393783 ..  393800 +  -6.9  -3.34192   GCCCGGGTTGAGGTA             GAGCACG CCGT CGCGCTC              TTCCTTCAGCGGCTT  54 149
JJQ57_RS01810 NONE
        mutM  401796 ..  401806 +  -2.4  -2.62184   CCAACGCTGAAGCGC                 CGCG CCG CGCA                 TACTCTACCGCCACA  38 31
JJQ57_RS01820  402467 ..  402477 +  -2.4  -3.51032   TCACGCTGGCACTAC                 CCGC AGC GCTG                 TTATAGTTAGGCGAT  47 47
JJQ57_RS01825  402889 ..  402917 + -14.7  -4.43501   TTTCCAACGGAATGA        AAAAAAGCCGGTC ATC GACCGGCTTTTTG        TTTTCTCGATGCATT 100 42
JJQ57_RS01830  404214 ..  404230 + -10.1  -5.29445   GTCGAGGAGGACCCG              GCCGGTC ATC GATCGGC              TTTTTCTTGTTCAGG 100 111
JJQ57_RS01870  412300 ..  412315 +  -2.5  -4.37092   CGGCTCTACGTGCCG              CTCTG ATCGCG CAGGG               TTTTCTCCAGCACCT  62 20
        ftsY NONE
        ftsE NONE
JJQ57_RS01915 NONE
        rpoH  422018 ..  422038 +   -14  -5.60993   CGCGCCTCGCGAAAA            CCGCACCC CGCAA GGGTGCGG            TTTTTTTCTGCCCGG 100 45
JJQ57_RS01925  422757 ..  422779 + -12.6  -2.72144   GCGCTGGCGCACGTA           GGGGCCCGGC CTG GCCGCGCTCC           ATTTCAGCGGGCTGG  65 114
JJQ57_RS01935  423836 ..  423858 +  -9.9  -3.21416   CCGGTTGCCTCAGGC          GGCGCACTTG TCGA CAAG-GCGCC           TTGGTCATCGGGGTG  64 43
        thiS NONE
JJQ57_RS01945  424991 ..  425039 + -31.8  -3.64198   GATACCGACTACCTG GGGCGGGCTGTCCGCCGGATGC GGGAA GCGTCCGGCAGGCAGCCCGCCC TTCTGTCTCTAGCAA 100 39
        trmB NONE
JJQ57_RS01955  427335 ..  427385 +   -14  -2.63102   GCCCTCAGACGATCA GCTCGGCGCC-GCGCAGCGTG-CCG TCGT CGTCCAGGC-GCGCCGGCGCCGGGC TGATCTGCAGGTACT  71 49
        pilT NONE
JJQ57_RS02025  439417 ..  439440 + -18.2  -3.66178   AGTAGGCCAGCGGCT          CCTCGGCCTG GGCG CAGGCCGAGG           TTTCCAGTTGCAGGG 100 50
JJQ57_RS02035  440881 ..  440898 + -14.1   -4.7497   CGCCAGGTGCGAGAA             GCCCGCC ATCC GGCGGGC              TTTTTCATGGGTGGC 100 48
JJQ57_RS02040 NONE
JJQ57_RS02045  443846 ..  443863 + -14.1  -4.77036   CGCGAAGATGAAAAA             GCCCGCC GGAT GGCGGGC              TTTTTCGTGGTGGCA 100 216
        pilG  450515 ..  450528 +  -9.5  -3.35358   CCGTTTCCTGATATC               CGGCC GCAT GGCCG                TTGATGCTTATTTCG  63 30
        pilH NONE
JJQ57_RS02095  451524 ..  451543 + -12.8  -2.79796   AACAGCTTCACCGGT            TGGGCCGG TCTG CCGGCCCG             TGTCGTGACATGGAA  68 40
        pilJ NONE
        pilK NONE
        chpA NONE
JJQ57_RS02115 NONE
JJQ57_RS02120 NONE
JJQ57_RS02125  464397 ..  464420 +  -8.9  -3.09635   CCGGCCGGGATAATC          CGACGAC-CC ACCAC GGAGTCGTCG          TTCCATGCTCGCCAT  57 73
JJQ57_RS02130  465048 ..  465087 + -14.3  -3.55444   GTAGCCGCGCCTCAG GCCGGCGCCAGGCGCC-GC CGCA GCAGGCG-TTGGCGCAGGC  TTTCGAACCTGCCGA  85 37
JJQ57_RS02150  470417 ..  470440 +    -3  -5.46657   CGGCGCCTTGCGCTT          CCC-GGTTCGC AGC GCAATCCAGGG          TTTTTTCTTAGCCTG  91 66
JJQ57_RS02155 NONE
JJQ57_RS02160  471735 ..  471752 + -14.1  -4.95876   ACCTGAAACGAAAAA             CGCCGGC GATC GCCGGCG              TTTTTCATTGTGCTT 100 47
JJQ57_RS02180  474063 ..  474075 +  -4.8  -3.04144   CGCGTAGCCGCCTGT                CCTG CCGAT CAGG                TCTTGACCATCGACG  47 212
JJQ57_RS02185  474444 ..  474465 +  -2.3  -3.05715   GCCTGCTGCGCAAGT           GGATGAGC AAATGAA GCTC-TCC           TTCCATCAGCACATT  41 12
JJQ57_RS02190 NONE
JJQ57_RS02195 NONE
JJQ57_RS02200  475864 ..  475878 + -11.4  -4.75954   GGTGCCAGCCTCCAC               GCACGC TTA GCGTGC               TTTATTTTCCGTTTT 100 16
JJQ57_RS02205  476909 ..  476934 + -14.1    -4.652   CATAATTTTTTCAAT         GGCTTAAGGCA GTAA TGCCTTAGGCC          TTTTTGCCATCATTT 100 36
JJQ57_RS02220 NONE
        merP  479193 ..  479207 +  -2.1  -2.75712   GCAGAAGTGAGGTCA               CGATG AGCGC CATTG               TCCTTGAGTCCGTGC  39 31
JJQ57_RS02230  479717 ..  479746 + -13.5  -2.53995   TTTGCCGTGGAACAC       GGCGCGGGCCAGGC TGT GCC-GGCCTTCGCC       TCGGTTCAACTGGGT  67 335
JJQ57_RS02250 NONE
JJQ57_RS02255  485132 ..  485157 +  -4.6  -2.78712   GCAGCGACGATACGG         CGCTGCCTCA CGGATA TGAGGACGCG          TGGTTGGGTTGAGGC  44 165
JJQ57_RS02260  486168 ..  486181 +  -6.7  -3.40403   AAAGCTCAGCGTATG               GACTG AAAC CAGTC                TTGTGCTGAGCAGGC  57 66
JJQ57_RS02270 NONE
JJQ57_RS02275  490330 ..  490343 +  -2.4  -3.31157   TCTCGTAAGTTGGAT               TTGG CTCCGT CCAA                TTAATATAGTCATTG  45 8
JJQ57_RS02280  491490 ..  491501 +    -3  -2.79501   GACTGGGTTCAAGTT                TCAA ATTA TTGA                 TCTGGTGAAGATATG  40 14
JJQ57_RS02285 NONE
JJQ57_RS02290  492945 ..  492955 +  -8.2  -3.50393   GCGCCTGCTGGCGGC                 GCCC TAT GGGC                 TTCTCTAGCCTGAAG  63 126
JJQ57_RS02295  494694 ..  494710 +  -5.1   -4.2349   GTATCACTTTTAAGT              GCTTCAG CGG CTGAAGG              TTTTCCCTATCCAGA  65 514
JJQ57_RS02305  496427 ..  496444 + -14.1  -5.38054   TAAAGCTGCACGATA             GGGCCGC GACT GCGGCCC              TTTTTGTTTCTGGGC 100 38
JJQ57_RS02320 NONE
JJQ57_RS02325 NONE
JJQ57_RS02330 NONE
JJQ57_RS02335  501227 ..  501258 +    -5   -3.4072   GGTTGGTCTTGCGCT      TCTTGGCGCGGCCG CGAG CAGCTGAGTCAGGA       TTGTGGTGCCCGATC  53 1
JJQ57_RS02355  504525 ..  504556 +   -16  -3.14132   TCTGAAGCATTCTTG      GGTCATAGAGGCAG TCCT CTTCCTCTATGACC       TTGATGCCAGGCCAG  86 275
JJQ57_RS02360 NONE
JJQ57_RS02365  505706 ..  505733 +  -5.6  -4.53036   TCTTACATGAAAAGT        CGCTTGCGCTG CTTCGGC CAGTGC-AGCG        TTTTCCTCTTTATGA  74 31
        glnK NONE
JJQ57_RS02390  510333 ..  510363 + -23.3  -3.05596   CAACCTGTAATACGT       GCCGGCGCCCGGC TTTCC GCCGGGCGTCGGC       TTGCCTCCCGCGCTC 100 31
JJQ57_RS02395 NONE
        sutA  511422 ..  511457 + -21.3  -2.62616   GATTTCGCGTCATCC    CAAGGCCCGCCAC-CC GTGAG GGAGTGGCGGGCCTTG    TGCTATGGCGCCTGC 100 39
JJQ57_RS02405  512804 ..  512836 +  -6.7  -3.13403   CGAACGCCTCGAAGA      ACGCCAGGGCCCGCG GGT CGCTGGCATAGGCGA      TGTTGATACGCAGCC  53 70
JJQ57_RS02415  515632 ..  515664 + -10.6  -2.74012   TTGAACCAGATGGCA     CG-CAT-GCCGGCGCG GCG CGCTCCGGCGATGTCG     TCGTTGGGGTGGTCG  60 165
        cyaY NONE
JJQ57_RS02455  520938 ..  520969 + -15.2  -5.10029   ACTGTGTTAGTGTCC      GGGAAAACCCCGCC TTCG GGCGGGGTTTTTGC       TTTTTTGCGATTCCT 100 67
         rnk  521616 ..  521645 +    -5  -3.04144   CTGCTGCAACCGATA       TGGCTGGCGCA ATACACCGC TGCGCC-GCCG       TCTTGCCGCTGCGCG  45 205
JJQ57_RS02490 NONE
JJQ57_RS02495 NONE
JJQ57_RS02500  528641 ..  528659 +  -2.2   -3.1811   CGTGGCCAGGAAAGC             CCGCGCCG GGT CGATGCCG             CTTTGTTGTAGGCAG  43 102
JJQ57_RS02505 NONE
JJQ57_RS02510  534121 ..  534135 +  -2.1  -3.31263   ACACATGGATGCCAC               GTACT CAGCC AGTGC               TTATCGCAGTGAAGT  45 45
JJQ57_RS02515  535451 ..  535464 +  -3.1  -4.36914   TGGGCGCGACTTCAG               C-GCTG TGC CAGCAG               TTTTCTGCCGCGGGC  64 173
        algZ  538125 ..  538143 +  -4.5  -2.63858   TATCCATGTGCGCGA             CTCATGC AGGAA GCCTGAG             CTTATGAATGTCCTG  41 8
        algR NONE
        hemC NONE
JJQ57_RS02540 NONE
JJQ57_RS02545 NONE
JJQ57_RS02550  543191 ..  543217 +  -4.4  -3.60627   TCTTGCCGCAGAGCT        GCCTTGCGGCT TGAAAC GGCCG-GAGGC         TTTCCACTACCGTAG  53 129
JJQ57_RS02555  543755 ..  543776 +  -3.5  -3.75665   TTCCTCCGACGTGCC           TGACGCGGG CTGT CCCGTGGCC            TTTCGTCAGCTCTCG  54 23
         rsd  544543 ..  544570 + -13.5  -4.87318   CGAGTCGTTACGAAA        CGGCGCGTCTCC ATGCG GGAGA-GCGCCG        TTTTTGCATTTTAGC 100 49
JJQ57_RS02570  546337 ..  546361 + -11.3  -3.30771   CAGGGGTTCGATGAC          CGTTTCGCGCC AGG GGCGCGCGGCG          TTCTCCAGGATCTGG  66 304
JJQ57_RS02580 NONE
JJQ57_RS02585 NONE
JJQ57_RS02590  549916 ..  549931 + -11.8  -5.36441   GTATCCTCGGGAAAG              CCCGGC ATCT GCCGGG               TTTTTTCTGTCCGCC 100 102
JJQ57_RS02595  550708 ..  550723 + -10.4  -2.77522   CTCTGAGCCGCCCGA              CACGCC GACG GGCGTG               ATTGTTACAGAGTAT  60 35
JJQ57_RS02600  552722 ..  552748 + -18.8  -3.00946   GGGTTCGCGCAACCA         CGACGGCCAGTG CGA TACTGGCCGTCG         TCATTTCTACGGAAG  91 43
JJQ57_RS02605  553734 ..  553764 +  -3.9  -3.53012   TCTCGATTCGATGGT      TTCGAGACGC-ACG CTGG CGTAGCGGCACGGA       TTTGAAAAGGGCGGC  51 506
        hemB NONE
        ppk1  558828 ..  558850 +  -6.3  -3.76224   AAGGCTCTTGGGCTC          TGCCTTCAGG CGCA CC-GAGGGCA           TTTCCTGGGTGCCGC  62 138
        trxA  560757 ..  560775 + -17.4  -5.89947   AGGCCTCGCTGGAAA             GCCCCGCG ATT CGCGGGGC             TTTTTTTTGCGTTTC 100 50
         rho  562258 ..  562281 + -17.4  -4.26188   AGAGTACCAAACAAA          GGCGCTCCGG TTGA CCGGGGCGCC           TTTTGCATATCTGGA 100 47
JJQ57_RS02650  564300 ..  564349 +  -6.4  -3.06492   CCAGCAGTGACCGAA TGCCGCGT-TTGCCTGCTGCCGG ATGGG CCGGGAGCAGGTAGGATGTGGGG TCTTGCAGTGAATGG  51 31
        ubiD NONE
JJQ57_RS02660  567037 ..  567053 +  -9.3  -4.15044   AGACCGGTGAAGCCG              GCGGCGG TGC CGGCCGC              TTTCTTCGGCGCCAG  75 255
        fliL  570024 ..  570046 +  -7.6   -3.6392   CGTTCTGTCCCGCGC           TCCCGGATGC GAG GCACCGGGGA           TTCTGCTTTCCTGTG  62 52
JJQ57_RS02680 NONE
        rbbA NONE
JJQ57_RS02690  575586 ..  575596 +  -6.8  -3.72893   CGGATCGAGAGTTCG                 TCCG GCT CGGA                 TTTCATCAGCCAGTA  61 459
JJQ57_RS02720 NONE
        pepP NONE
        ubiH NONE
JJQ57_RS02735 NONE
JJQ57_RS02740  582401 ..  582425 +    -5  -3.62046   TCCTCAGAACAGCGC         CGCGCA-GTCA CGCA TGACCTGCGCC          TTGTTGCGCAGGTAG  55 74
JJQ57_RS02755  585491 ..  585512 +    -3  -3.44284   TTTCTTATCATTCGT           GCCTACGTT CCGCT GACG-AGGC           TGTTCTTCATGCAGG  49 63
JJQ57_RS02760  586534 ..  586564 + -16.9  -3.33696   ACCGCCGGTTATACT      CGGCGCCCCGGCTC GTCC GAGC-GGGGCGTCG       TTCGTTCCGCACCGA  91 40
JJQ57_RS02765 NONE
        gcvT NONE
        gcvH  589911 ..  589942 +   -16  -4.56597   AAACCCGCTATCCTT      GGACAAGGCCTCGA TCAT TCGAGGCTTTGTTC       TTTTTGCAGCGGCGA 100 61
JJQ57_RS02780  592966 ..  593010 + -12.2   -3.1355   CGCCGGGGCCTACTG CTGGACGGCG-GACTGCTCGCC GCC GGCGAGGA-TCGCGCTGGCCAG TTCCATGTCGCTGGC  70 66
JJQ57_RS02805  598060 ..  598080 +  -8.2  -4.43877   CCGCCTGGAGCAATT            GCTGGCGC GTTGA GCGCCAGG            TTTCTTTCCGCCTTC  84 13
JJQ57_RS02810  599378 ..  599393 +  -2.4  -3.14602   CCTGCGCGCGCTGTT              CGGTGC CTGA GCGCGG               TCTTCGTCGGCTGGC  43 16
        argE  600770 ..  600780 +  -2.4  -3.53444   GAGGAACTTCATGAT                 GCGC CCG GAGC                 TTTGCAGGGCGATCC  48 154
        argA  602954 ..  602987 + -27.5  -3.10409   AAGAGCCTGTGATCC     GCCGGCGCGTCCCTG GGCG CAGGGGCGCGCCGGC      TTCGCTCAGTTGCTG 100 29
        amgR  608461 ..  608495 + -23.7  -3.01712   CAAGGCCTGAGTCTC    CG-CGCGGCCGGTGCA GCGA TGCACCGGCCGCGTCG     TCTTACCCGCAACAG 100 31
        amgS  610308 ..  610322 +    -7  -3.49618   GTTGCCGCCGATCAG               CGCGCC TTC GACGCG               TTGCTTGTGTCCGCC  58 464
JJQ57_RS02870  613264 ..  613286 +   -12  -2.87132   ACCTGCACCAGCCAG           CCGCTGGC CTTCGCC GCCAGCGG           TGTGTAGCAGCCCCA  63 154
        hslO  614974 ..  614984 +  -2.4  -3.43042   GGGCCTTCCGAGACC                 CGCC ACT GACG                 ATTTTTCATCCAGCG  47 17
JJQ57_RS02885  616665 ..  616678 +  -9.5  -5.14563   GCACCATGAAAAAAA               CCGCC TTCG GGCGG                TTTTTTCATGGGCGA 100 51
JJQ57_RS02900  619155 ..  619195 +  -5.9  -3.01791   GCTTCTGACTGCCCG  GATTCCCCTAGTCCGGTCC GGC GGCCCCGACCTGGCGGATC  TGTTCGACCAGCCAT  49 33
JJQ57_RS02910 NONE
JJQ57_RS02915  623215 ..  623227 +  -3.3   -4.1021   ACTGCCTGATGGCCC                TGCCC GAA GAGCA                TTTCTCGTTCTGACG  58 0
JJQ57_RS02920 NONE
JJQ57_RS02925  625104 ..  625145 +    -3  -3.65522   TCGACCGCCTGGCCA GC--GTCCGGTAGCGGCCGGC TGA GCAGGCGG-TACTGGACCAGC TTGTTCGCCTCGATC  53 233
JJQ57_RS02935  625894 ..  625911 + -14.1  -4.11394   CGGTAGAAAGTAAAA             GCCCCGC GGTC GCGGGGC              TTTTCCACATCGGCT  93 45
        lysM  632049 ..  632067 + -13.1  -4.54727   CCGGCGTTTCGCCAA             CCCCGCC CGCGT GGCGGGG             TTTTCGTTTCCGCGG 100 43
        nudE  633432 ..  633446 +  -2.7  -2.52543   CAGCGCGGCGAGTAC               CAGGC ATGAG GCCGG               TGCCTTGGGGCGAAT  37 17
        cysQ  634366 ..  634392 +  -4.3  -3.10164   GAAAACATGCAAATA        GCCCGCAG-CAG ATGA CTGACAGCGGGA         TTCGGTAGTGGCTCA  45 133
JJQ57_RS02985  635404 ..  635415 +  -2.2  -4.62783   TTGATGTCAAAATTG                GC-CG ATC CGTGC                TTTTTCAGCTCCGTC  68 108
JJQ57_RS02990  635619 ..  635640 + -12.3  -3.69354   GCACTGAAACGAAAA           GGCCCGGTCT TCT AG-CCGGGCC           TTTGCCGTTGTGGCG  78 11
JJQ57_RS03065  655591 ..  655606 +  -6.8  -2.98823   GGGCTGATCGGAAAA              GGACGT TGGC GCGTCC               TCTGTATACCGGAAC  51 359
JJQ57_RS03070  656128 ..  656152 +    -2  -5.76633   GCAGTAGGCGCAGCA          GCGCCCATAA CTCCA TTGCAGGCGC          TTTTTTTGTGTCTGC  95 149
JJQ57_RS03075 NONE
JJQ57_RS03080  656879 ..  656893 +  -3.5  -2.53876   TTCCAGCGCCCGTTC               GCATG GGGCG CGTGC               TGCGTTGGGATGCGG  39 164
JJQ57_RS03085  657137 ..  657159 + -13.4   -3.6288   AAGCGCCGTATAGCG           GGCTGTAGGC ACT GCCTGCGGCC           TTTCCCCATTCGTTT  81 39
JJQ57_RS03090 NONE
JJQ57_RS03095 NONE
JJQ57_RS03100  660552 ..  660581 +  -5.6  -3.56092   AAGGCATAGCGTGTG       GCGCTGGCAGTT GCATGA GGCCGCTAGCGC        TTTCCGACCTGGTGC  57 32
JJQ57_RS03105  661078 ..  661103 + -10.4  -5.06414   CTTCCCTCAACTGAA         GCCCCGGCAT AATCCC GTGCTGGGGC          TTTTTCTTGCCGCCG 100 173
JJQ57_RS03115 NONE
JJQ57_RS03120  664111 ..  664128 + -12.7   -5.0538   GCCCCACTTGCCCAA             GCCGCAC GCCT GTGCGGC              TTTTTTACGCTCCGC 100 51
JJQ57_RS03180  676310 ..  676329 +  -9.2  -4.35461   GGCGGAAAGCAAAAA            GGCCCACC CGGA GGTGAGCC             TTTTCGTCGTATTCA  83 47
JJQ57_RS03185  677577 ..  677631 +  -4.4  -3.59979   CGATTGACCCTAATG GGTGACAGTGTGAGATGACA-CTATG TCGCC CATAGCTGTCACCCC-CACCCTCACC TTTACCGTGCAGCCA  53 34
JJQ57_RS03190  677940 ..  677966 +    -8  -3.53224   TGGCGCTATGGTTTG        CCC-GTCACGG TAAATC CCGTGGCCGGG         TTTGGCGACCCGATG  60 61
JJQ57_RS03195 NONE
JJQ57_RS03200 NONE
JJQ57_RS03205 NONE
JJQ57_RS03210 NONE
JJQ57_RS03215 NONE
JJQ57_RS03220 NONE
JJQ57_RS03225 NONE
JJQ57_RS03230  681751 ..  681761 +  -5.4  -2.72344   ACGATGAGATTCGCG                 CTCA CCT TGAG                 TACTTGGGCATGGCG  44 47
JJQ57_RS03235  682813 ..  682842 + -12.1  -3.68341   TACCTGACTGACGCC       GTACCCCGCCGGCA CCT TCCCGGCGGGG-GC       TTCTTCGATCACCTT  78 34
JJQ57_RS03240  683529 ..  683543 +  -2.8  -3.53012   TTATCCGTACGAACT               GGAC GGCTAGG GTCC               TTTGAAGAGCGCGAG  49 346
JJQ57_RS03260  685542 ..  685553 +  -2.2  -2.78679   CCGCAGCTACCCCAG                TTCG ATAT CGAG                 GTTTGACTGAGCCGA  39 8
        hisB NONE
        hisH NONE
JJQ57_RS03340 NONE
        hisA NONE
        hisF  703734 ..  703758 +  -6.4  -4.44046   CGGCTAGCCATTCCT         G-AGCGCGAGT CGAC ACTCGCGCGGC          TTTCTTTCAGGTACA  76 75
JJQ57_RS03355  704599 ..  704652 +  -7.2  -3.82378   GATCCGCGAGCGCTA CTGACGCCTCGCCGGCGATGCTGGC AAAAG GCTGGCCTGG-CGGCGCGGCGCTGG TTATTCTGCCTCGCT  68 22
JJQ57_RS03360  705474 ..  705487 +  -5.2  -3.53012   GCCAACAGGGGGCCG               GGCG GGGAAA CGCC                TTTGCCGGCCCCGCC  53 54
JJQ57_RS03365  706740 ..  706765 +  -6.1  -3.15861   TCGAGCGCTTCGCGA         TCGAGCTCG GCGATCAG CGAGCGCGA          TTCGTCCGGGTGGTC  51 415
JJQ57_RS03400 NONE
        grxC  715167 ..  715178 +    -3  -2.52464   GCGCTGCTGTCTGCC                TGAA ACCA TTCA                 TGAATTGACCCAAGG  39 23
        secB  715717 ..  715733 + -10.8   -4.7497   AGCGCTTGCGAGAAA              GCCCGC CTTGC GCGGGC              TTTTTCATGCCTGCC 100 45
JJQ57_RS03420  717168 ..  717219 +  -8.6  -3.73224   GGGCAAGGGCCGCTG CCCCGCCGAACCGGCGGATAACCGC GAT GCGGTTATTCGCCC-TACGCCACGG TTTGATCGACGGTGC  69 510
JJQ57_RS03445  724461 ..  724471 +  -3.2  -2.94924   TAACCGAACGGCGCG                 GCGA ACT TTGC                 GTTTCTCCATGGGCC  42 481
        thiI  727744 ..  727764 + -10.4  -3.61398   ATGTGCGTGTTTATC            GTCCGGCT TAAGC AGCCGGGC            TTGTTCGGCGGCAGC  70 15
        typA  729827 ..  729866 + -30.8  -4.34402   CAACGGCGTGCCTCA  CGGCCGGCAGGCAGGGCA GGGG TGCCCGGCCTGCCGGCCG   TTTTGCTATGCGCCG 100 64
JJQ57_RS03475  731061 ..  731082 +  -2.3  -3.13899   AGGATGGCCAGGGCA           GGTATCAGTG GAT CG-TGGTACC           TCTTGATCAAGGATT  43 121
JJQ57_RS03480  734698 ..  734716 +  -2.4  -3.24146   GTCGCATCGGAGGCC            GAGCAGC CATGAC GC-GCTC             CTTTTCGTTCAGAAC  43 14
JJQ57_RS03485  736078 ..  736135 +  -2.4  -3.53012   CAATGAGCCTGCTGC GT-TCCTC-GCCGAACAAGCCATGAGC-CG GTTC CGCGCT-ATG-CT-GTTCGGCTGAGGAGGC TTTACGACGGGCCCC  47 3
        estA  738153 ..  738183 + -17.5  -3.59979   CTGGACTTCTGAAAC       GGCGGCCGGCGCC CGGGC GGCGCCGGTCGCG       TTTCCCGTCGACGGA 100 29
        gloA  738928 ..  738947 +  -4.9  -5.24989   AGCGTGACCGCCAAT            TCCGCGT TAAACT GCGCGGG             TTTTTTCCTCTCTCC  91 120
JJQ57_RS03500 NONE
JJQ57_RS03505  740573 ..  740583 +  -2.4  -3.91897   GCGTTCCTCAGGGAA                 CCCG GTT CGCG                 TTTCTGACTCCAAGG  54 8
        bamE NONE
JJQ57_RS03515  741492 ..  741506 + -12.8  -5.63517   GAGCCAGTGAAGGAA               CGCCCC GCC GGGGCG               TTTTTTCTTTCCAGC 100 31
        hutC NONE
JJQ57_RS03530  744454 ..  744478 +  -8.6  -4.60797   CGCCGCCAGGAAAAA         GCGTCTACACC GAAA GG-GTAGGCGC          TTTTGTCTATCAAAA  86 49
JJQ57_RS03535 NONE
JJQ57_RS03540 NONE
JJQ57_RS03545  747450 ..  747462 +  -3.3  -3.16421   GGCTCCTTCTCCCGG                GGGAG AGG CTACC                TTCGCTAATTCTTAA  44 111
        hutU NONE
JJQ57_RS03555  750933 ..  750947 + -12.8  -3.06796   GAGACGAATTTCCAG               GGCGGC GCG GCCGCC               TTCAATCCCATGAAA  71 39
        hutH  752521 ..  752540 + -10.6  -3.72576   GAACGCGCTGCTGCC            GGCCCGGC TGTT GCCGAGCC             TTTGATACCCGCCCC  74 1
JJQ57_RS03565  754064 ..  754084 +  -8.1   -4.1196   ACGATCGAGGCCGTT            CCCCCGGGC GCG GCCCGCAGG            TTTTCCAACTGCCTT  76 78
JJQ57_RS03570 NONE
JJQ57_RS03575 NONE
JJQ57_RS03580 NONE
JJQ57_RS03585 NONE
JJQ57_RS03590 NONE
        hutG  760568 ..  760579 +  -5.8  -3.53012   CGAATACGCCAGGAA                CGCA CGGC TGCG                 TTTCCAAGAGGACAG  55 266
JJQ57_RS03600 NONE
JJQ57_RS03605 NONE
JJQ57_RS03610 NONE
JJQ57_RS03615 NONE
JJQ57_RS03620  768320 ..  768332 +  -4.7  -2.52464   GCCAGGGCCACCAAT                ACGCC GCT GGCGA                TGGCTTCGCCGCGCA  42 506
JJQ57_RS03630 NONE
JJQ57_RS03635  770533 ..  770549 +  -5.7  -3.54408   GGAGATCACCGTGGT              GGCGGCC AGG GGCTGAC              TTACTTTCCATAGCC  57 10
JJQ57_RS03640  771983 ..  771997 + -12.8  -3.41234   CCATGCTCGTTCTCC               CGGCGC CAG GCGCCG               TTGCTTGGATTGATG  76 518
         pip NONE
JJQ57_RS03655  773844 ..  773865 +  -7.3  -4.85599   CGGTGCACGTAACGC           GAATGACTG GAAA CAGGCATTC            TTTTTGTCAGATCGC  88 311
JJQ57_RS03660 NONE
        mdoH  778169 ..  778210 + -20.1  -4.27911   CCGCCGCCCAGTCCT GATCCCATGCCCCCGGCGG AACG CCGCCGGGGGCATGGTCTG  TTTCTTGCCTGTTTT 100 24
JJQ57_RS03670  779201 ..  779255 +  -8.6  -2.71263   AGTGGCTGAAGGAAA TGGAATGAACCGCT--GACGGCCCCC GCGAA GGGGGCCGTCGTACCTGCGCATTCCA TCGTTCGAGAGAGTT  54 18
JJQ57_RS03675 NONE
JJQ57_RS03680  781069 ..  781082 +  -3.7  -3.41051   AGTCCAGCGCCCATT               CGCGC AGGC GCTCG                TTCTGGTAGCGGTAC  49 131
JJQ57_RS03740  790209 ..  790223 +  -5.6    -4.208   GGCGGCGCCCATCTT               CCGCTT AGT ATGCGG               TTTCTAATTTTCCCC  67 64
JJQ57_RS03745 NONE
JJQ57_RS03750  791663 ..  791682 + -16.4  -4.87291   TGGCGGCAACGCACA            CGCCCGGC ACTC GCCGGGCG             TTTTTCATTCCGGTC 100 45
        rpmE  805346 ..  805364 +  -9.5  -4.81551   CGCTGTACCGAGAAA             GGCGTCC CTGGT GGGCGCC             TTTTTCATGTCCGTG  93 75
JJQ57_RS03810 NONE
JJQ57_RS03815  807581 ..  807599 +    -3  -2.65586   TGACAGCCGGGTCCT             GACGATCT TGT GGGGCGTC             GTCTTCTTGCGTATG  39 47
JJQ57_RS03820  808950 ..  808973 + -16.8  -4.66163   TCCGCCGGATAAAAA          GAAACCCCGC CTTG GCGGGGTTTC           TTTTTGCCTGCGCCT 100 45
        pilM NONE
        pilN NONE
        pilO NONE
        pilP NONE
        pilQ  816661 ..  816678 +  -3.3  -2.62184   ATCATGAATAATCAG             GCCATCG CAAT CGGTCGC              TGATATCGAACAACG  39 5
        aroK  817191 ..  817227 + -14.4  -3.52341   ATTCTCGAACGCCTG    CGCAAGTTGCCGCCCC GCTGA GGCGCGGCGAATTGCG    TTATCCTATTGCCCT  83 5
        aroB NONE
JJQ57_RS03865  820063 ..  820104 + -16.7  -4.19735   CTGCCGTCGCCTCTT GACGAAACTCGCTAGTCGT TAGC ATGACCGGCGGGTTTCGTC  TTTCATTTTGGCGAC 100 47
        gltB NONE
JJQ57_RS03875  826215 ..  826244 + -20.9  -4.61566   AATCACCGCGATAGA       CAAAAGGCACGGC CCCC GCCGTGCCTTTTG        TTTTGTGCTTTGCGA 100 67
        hemE  827433 ..  827450 + -12.7  -4.72272   GCCGGAACGAAAGAA             GGGGAGC AGAG GCTCCCC              TTTTTCATGCGCGGG 100 41
JJQ57_RS03895 NONE
JJQ57_RS03905  833159 ..  833177 +  -3.8    -3.727   CAGGACCGAGACGGC            GCTCGCG CTTGCC CGCG-GC             TTTGCCTATCATCCG  56 53
JJQ57_RS03910  834101 ..  834134 + -12.4  -2.70932   CAGCGCGTTTCGGCT     GTGCCGGCCGAGGGC GAGCA GCTC-CGGCTGGCGC     TGCTTCAACGCGGCG  65 137
JJQ57_RS03955  848104 ..  848115 +  -3.6  -3.57561   CTCGGTGGTGATGCG                GTCG TAGC CGGC                 TTTCGCCAGTTCGGC  51 158
        glnE NONE
        ilvE  860495 ..  860523 +   -14  -3.53811   CACCGAAGAAGGGTG       TGA-CAGGGAGGC GAAA GCCTCCCTGATCA        TTTCCGGAGCCTGAA  81 42
        waaF NONE
        waaC NONE
JJQ57_RS04000 NONE
        rfaP NONE
JJQ57_RS04010 NONE
JJQ57_RS04015 NONE
JJQ57_RS04020  867573 ..  867607 + -10.1  -2.90992   ACGAGTTAAACGAAA    GC-CGCGGTTGTCGG TCCCACT CCG-CAACCGCGAGC    TGCTTTGAAGAGGTT  61 74
JJQ57_RS04025 NONE
JJQ57_RS04030 NONE
JJQ57_RS04035 NONE
JJQ57_RS04040 NONE
JJQ57_RS04045 NONE
        wapR  874899 ..  874925 + -14.4  -3.01924   TCTCCTGACCGCTGA         TACCGCCGCGCT CAA GGCGCGGCGATA         TCTTCACCGCGCCTG  78 33
        msbA NONE
        hldE  880504 ..  880524 + -10.4  -3.00022   AACCACTAGTTACGA            CGCCCACG ATCTG TGTGGGCG            TATGTCTGGCGTACC  62 372
JJQ57_RS04075 NONE
         cmx NONE
JJQ57_RS04085 NONE
JJQ57_RS04090 NONE
JJQ57_RS04095  885326 ..  885342 +  -5.7  -3.18264   CGCGGTCGCGCCCAC              CGCCGGC CTG GTCGCCG              TTGCTGGATGGCCAC  49 76
JJQ57_RS04120 NONE
        waaA  891155 ..  891168 +  -4.5  -3.18582   CTGTCGCCTGGGTTG               CCGTA GCGA TGCGG                TTCCTGGCTGGAGTA  47 132
JJQ57_RS04140 NONE
JJQ57_RS04145 NONE
JJQ57_RS04150 NONE
JJQ57_RS04155  897321 ..  897356 +  -3.8  -3.01712   CGGCGCCTCGCCGGC    AACCG-CGCGGACGC CTGGTGA GCGGCCGCGGCGGAG    TGTTGGCGCGGCGCC  45 5
JJQ57_RS04160  899636 ..  899651 +  -5.4  -3.08679   TTTACATCTTCGATC              CGCGCGT TCA ACG-GCG              TCTTACATCCGCCGC  47 71
JJQ57_RS04165  901208 ..  901229 + -18.7  -4.67641   ATCCGCAGGACCCGA           CGCCCGCCG CATC CGGCGGGCG            TTTTCGTTTTCGCCT 100 47
JJQ57_RS04170  902223 ..  902248 +  -3.1   -2.7386   AACGTTCCCCTCAAT         TCAGC-GGGCGC TAG GCGCCGAGCAGG         TGATTCCCATGGATT  40 12
JJQ57_RS04175  903423 ..  903462 +  -9.2  -3.04144   GCTGCGTTGAAGTCC  TGGCTCCCCTCTCC-CTCC AGG GGAGAGGGGAAGGCTGCCA  TGTTCCGAATCGAGA  60 31
JJQ57_RS04180 NONE
JJQ57_RS04185  907311 ..  907324 +  -2.3  -3.06261   ACCGCCGGACAAGGA               GAGCA TCCA TGCGC                TATTCCGACTTCACC  41 40
JJQ57_RS04190 NONE
JJQ57_RS04195  909289 ..  909310 + -17.3  -3.10894   GGCCAGTCAAGCGAA           GACGCCCCC GACC GGGGGCGTC            TTGGCTCGTGCTAGT  88 59
        thiC  913371 ..  913386 +    -6  -3.29144   CTGGTCGAGCTTGTT              GGCCAG CAGC CAGGCC               TTGTGCGCCAGCTCG  53 288
JJQ57_RS04215 NONE
JJQ57_RS04220  915291 ..  915303 +  -2.6  -3.54935   GCAACTGTGATCTGT                TCCG CTTTC CGGG                TTTGCCGCCACTTTC  49 94
        cpdA  916200 ..  916232 + -12.6  -2.72344   CCGGATACTGACATG     CCCCC-CGGCCGCGG GATG CCGCGGCCGCGTGCG      TCGTTGCCGATCGGC  68 30
JJQ57_RS04230 NONE
        parE NONE
JJQ57_RS04240 NONE
JJQ57_RS04245 NONE
        parC  922752 ..  922770 + -13.8  -4.13767   GGGGAATGTCGTCTC             CCTGGCGG GTT CCGCCGGG             TTTTCCCCTGACGCA  93 122
JJQ57_RS04255  923683 ..  923700 + -14.1  -4.98531   GCCGACCAGGAACAA             GCCCCGC CGAA GCGGGGC              TTTTTCGTTTCGGCG 100 50
        serB  927286 ..  927304 + -17.4  -3.84915   AGAGCGGAAAAGCAA             CGGGCGCC CAG GGCGCCCG             TTCTTCATTCGTCTC 100 89
        motA NONE
        motB  936986 ..  937025 + -11.4  -2.72661   CCATGCGTTGCGGCA  TGATGCGCCCGTCCTCCAG GGC CTGGAGCA-GGGCGCAACC  TGGTTCACGGTCGTG  62 91
         orn  938603 ..  938635 +  -5.4  -3.57144   CAAGCTCTGATCCGT     CC-GGACCGGGCGGC AGGC GCCGGCTGGGCTAGG      TTTCCCCGTGGCGCC  55 31
JJQ57_RS04325 NONE
        tsaE NONE
        amiB NONE
        mutL  945114 ..  945136 +  -9.1  -3.85817   GCCTTGCAGCTTCGG           GCGCAAAGC CCGAA GCTATGCGC           TTTGTCCAAGAGCGT  74 41
        miaA  946149 ..  946167 +  -3.8  -3.53012   AATTTGTCCGTCTGT             TTCCGG AGCGAGA CCGGAG             TTTGGACGGCGCCAA  51 47
         hfq NONE
        hflX  947849 ..  947863 + -12.8  -3.67976   GGTAGCATGGGTGGC               CGCGCC GCA GGCGCG               TTTCGCGTTACTAGA  77 79
        hflK NONE
        hflC  949961 ..  950003 + -22.1  -3.40403   GGCCAACAAGTAATA CTCGG-TTCTCCGGCGGGCG GCAG CGCCCGCCGGAGAAATCGTG TTATGATGAGCCAGC 100 28
JJQ57_RS04370 NONE
JJQ57_RS04375 NONE
JJQ57_RS04380  952828 ..  952847 + -12.8  -4.54727   GGGGCGATGACGGAA            CGGGCTGC GCAT GCGGCCCG             TTTTCATTTCCGGGG 100 51
         rnr NONE
        rlmB  956929 ..  956962 +   -13  -3.07443   CCCGCTGGAGTGAGC     GCGTGCGGGGCCGC CGCGGC GCGGCCCCGCGCCA      TTCCATCCGCTGTAC  71 28
        rpsF  957579 ..  957596 +  -2.6  -3.12702   CGGACCAGTATTGAG             GAGCCA ATCACA TGGCAC              GTTTCTTCCGTCGTC  43 44
        rpsR NONE
JJQ57_RS04415 NONE
        rplI  959250 ..  959287 + -21.3  -5.09173   GCGGCAGTCCGCTAA   CATCGGGCACGGTACCG GCAA CGGCACCGTGCCCGTTG    TTTTTTCCGCTGTTC 100 81
        dnaB  960739 ..  960762 +  -9.5  -3.75153   TTGGGTCTTGCCCGG          CGGGCGCCT TACCAT AGGCACCCG           TTTCAGTTGCAGGAC  71 47
         alr  961861 ..  961886 + -11.2  -5.44721   GTGCCTTCCAGTACG         GACCTGGCCGC CTATA GCG-CCAGGTC         TTTTTTTGAAGTCGT 100 9
JJQ57_RS04440  963710 ..  963725 +  -4.6  -3.40899   CACTACAGAGGGCTG              GAACGC GGGT GCGTAC               TTCTGATAGAGAGTT  51 42
JJQ57_RS04455  969321 ..  969334 +  -9.5  -3.01712   ACAAGTCTTGCGCTT               CCGGG GCAA CCCGG                TCTTCGCGGAGAACC  60 163
JJQ57_RS04460 NONE
JJQ57_RS04465  972893 ..  972929 +  -8.6  -4.08692   ATCAAAAAATGATCG   GTTCCGCGGAGGCCCTG CCGC CCGGGACTCC-CGGACC    TTTTCACCCAGGTTG  73 40
JJQ57_RS04470  973995 ..  974025 + -16.8  -3.85698   ACGTTTCCCGCTCGG       CACCGACGCCCCGT CCT GCGGGGCGTTGGCG       TTTGTGCGCGGACCG  95 40
JJQ57_RS04475  975219 ..  975229 +  -4.6  -3.30771   CTACCACTTCCAGGC                 GGGT CAG GCCC                 TTGTGGCCGATCTCG  49 382
         azu  976212 ..  976229 + -14.1  -4.72272   CCGCTGCATGAAAAA             GCCCGGC CGCT GCCGGGC              TTTTTCATGGGCGCG 100 53
JJQ57_RS04510 NONE
JJQ57_RS04515  981457 ..  981492 + -15.4  -3.14931   CGTCCTGACAAACGG    GTGCGGCAGGG-CCGGT GAG GCCGCTCCCTGCCGCGC    TTGCTAGACGGTGAA  83 33
JJQ57_RS04530  985990 ..  986008 +  -3.7  -2.78679   GTGTGGTCGGTCTGG             AGTCCCG CGATC CGGGGCC             GTTTCAGTAGCACCC  42 155
JJQ57_RS04535 NONE
        livM NONE
JJQ57_RS04545 NONE
JJQ57_RS04550  989882 ..  989919 + -23.5  -2.78384   CGGCGGACATTGAGC   GCGCCCCGCCCCGGCG CTCTGGC CGCCGGGGC-GGGCGC   TGTCCTGCAGCGACG 100 28
JJQ57_RS04555  990986 ..  991003 +  -4.8  -3.28791   GTCAGAAAATGATCA             GTGCTC GCGCCG GGGCAC              TTATCCCCAGCGCGT  50 129
JJQ57_RS04560  992012 ..  992026 +  -3.5  -2.78596   AGCTGACCGGCGGAG              GCG-GC CGGG GCGCGC               TATGATGCCCCGGTC  40 35
JJQ57_RS04565  993172 ..  993221 + -15.6  -2.63102   GCAAAGGTATAGCTG GGCGTCGCGCGGACTGGC-CGCC AGCAG GGCGCGAAGGTCCGCGCGGCGGC TGCTGTCGCCGTGGT  74 418
JJQ57_RS04580  996514 ..  996524 +  -2.4  -3.60792   GAGACGCTGCGTGAG                 GGCC GCC GGCG                 TTTCAGCGTTGGGCG  49 27
JJQ57_RS04590 NONE
JJQ57_RS04595 NONE
JJQ57_RS04600 NONE
JJQ57_RS04605 1003466 .. 1003476 +  -8.2  -3.30124   TGCTTCGGCGGATAG                 CCGC TGG GCGG                 TTATCCGCCCTACCG  60 101
JJQ57_RS04615 NONE
JJQ57_RS04620 1008713 .. 1008726 +  -5.2  -3.04144   GCGGATGGGCGAGGC               CGGC GACCAG GCCG                TGTTCGCCGTGGCCG  47 517
JJQ57_RS04650 NONE
        desB NONE
JJQ57_RS04660 1015583 .. 1015595 +  -9.1  -2.57931   GCGGCTCGGCCGGCA                GCCTG TCG CAGGC                GTTCTCCACGCTCAG  54 210
JJQ57_RS04675 NONE
JJQ57_RS04680 1019240 .. 1019250 +  -8.2  -3.22653   GATGGCAGCGATGAA                 GGCC TGA GGCC                 TGTTCTACGACTCGT  58 19
JJQ57_RS04690 NONE
JJQ57_RS04695 1021379 .. 1021397 + -13.1    -4.386   TGGGAAAATAGGAAA             GCCCGGC ATCGA GCCGGGC             TTTTCTCGCGCCTTG  95 90
JJQ57_RS04710 1025059 .. 1025113 +   -12  -3.35679   CAGGCCGCGTTCGGC GAGCAGGTGGCTGTAGATCGCCTGGA AGC TCTCGGCGATCTGCGGCGCCGTGCCC TTGTGGGTGAACACC  70 141
JJQ57_RS04720 1026448 .. 1026469 +  -4.3  -3.64487   GTCGAAACTGACGTA           GAACGGCTG CTGC TGGCCGTCC            TTGTTGAGGATGTAG  55 162
JJQ57_RS04735 1027936 .. 1027946 +  -8.2  -3.30124   TGTGGCGGCGGATAA                 CGCC TGT GGCG                 TTATCCGCCCTGCGG  60 63
JJQ57_RS04745 1030885 .. 1030905 +  -2.5  -4.07568   CGGGCGAGGAAGCCG           CGG-GCGT CCAGTT GCGCGCCG            TTTTCGCAGGCGCGG  58 501
JJQ57_RS04760 1032589 .. 1032619 +  -6.1  -4.63218   CACCAGTGGCAGGCG       TCGTCGTCGACGT AGAAG GCTTCGACGAAGA       TTTTCTTCCCGCCGA  78 345
JJQ57_RS04900 NONE
JJQ57_RS04905 1066194 .. 1066221 +  -2.1  -4.28254   TGCCTGAGCCGCGGA        TGTCGCCATT TCACCGATC AATGGCG-CA        TTTTCGCTCTTAGCA  62 34
JJQ57_RS04910 1066784 .. 1066818 +  -7.7   -3.6682   TCCCCTGCAGAGAGC     GGGCAGGTCCGGC ACCGCGAAG GCCGCGCCAGCCC     TTTCCCTAGATGGGA  62 49
        speA 1068956 .. 1068994 + -24.6  -2.77222   CGGGAAGCGAACCAG   GCAATGGCCGGCTGGCGC GAG GCGCCCGCCGGCCATTTC   GTTTCAGATCCTGCT 100 60
        cntO NONE
        cntL NONE
        cntM NONE
        cntI 1075753 .. 1075781 +  -6.6  -3.53811   GCCAGCCAGGTGAAG       CCGGCGCT-GCCG AGGG CGGCGAGCAGCGG        TTTCACCGCGATCAG  56 228
JJQ57_RS04950 1077618 .. 1077628 +  -8.2   -3.5393   TTGCGCCGCGGCATG                 CCGC AAC GCGG                 TTTCCACCAGGTCGT  62 402
        lpdA NONE
JJQ57_RS04975 1081431 .. 1081453 +  -6.2   -4.1964   CTTTTGGCCGGTGTC           TTTTCGCCGG ACT CCTGCGGGAA           TTTTCCGATGTTCCA  67 44
JJQ57_RS04980 NONE
        mgtA 1084905 .. 1084924 + -12.1  -3.53444   TGGTTCTGAGCGATC            GGCCGGG CTTCGT CCCGGCC             TTTCCCGGCGCGTCG  74 32
JJQ57_RS04990 NONE
JJQ57_RS04995 NONE
JJQ57_RS05000 NONE
JJQ57_RS05005 NONE
JJQ57_RS05015 NONE
JJQ57_RS05020 NONE
JJQ57_RS05025 1092639 .. 1092649 +  -6.8  -3.17194   GCCATCCTTTTCCAG                 TCGC TTG GCGA                 TTCGCTTGGCCGGCT  52 226
        lipC 1098303 .. 1098333 + -16.9  -2.68881   GACTCTGATCCGCTC       GCCGGGTCGCC GCAGCCCTA GGCGACCCGGC       ATTAGTCTTTGGTCT  84 33
        fdnG NONE
        fdxH NONE
JJQ57_RS05065 1103350 .. 1103367 + -12.7  -3.81027   CATCGCCCGACCGGA             GGCCCCA GCGA TGGGGCC              TTTGCATTCATTCCG  81 56
        fdhE 1104434 .. 1104452 +    -3  -3.93583   TGGGCGTGTCGGTGA             CCCTACCC TGT GGATAAGG             TTTCTCCATGAGTTC  56 78
JJQ57_RS05075 NONE
        selB 1107919 .. 1107938 +  -2.8  -3.54424   GTCTCCGGGGAGATG            TCCATCAGC CGC GC-GCTGGA            TTTCGCCGAGTGGCC  49 156
JJQ57_RS05090 NONE
JJQ57_RS05095 1111638 .. 1111660 + -12.8  -2.51464   CGCAACAGCGCCTAT           GGCGTTAATG TGC CGTTAACGCC           CTTGGTGGGTAATGG  67 54
JJQ57_RS05100 1112323 .. 1112370 +  -6.3  -3.65902   TGAAACGCCTGTGAA G-CGCTC-CGTGGCTGGGCTACGC TCT GC-TCGCCCGGCCATGCGAACGAC TTTCCATGACATCCG  59 27
JJQ57_RS05105 1112765 .. 1112796 +  -6.4   -4.4009   GCTCGCGGGCATAAC      CGGCCAGCAGGGCCG AGT CGGCCGGG-TAGCCG      TTTTCTCCGATCAGC  73 242
JJQ57_RS05115 1114100 .. 1114112 + -10.5  -3.53012   TGCCTCTGAGAAACC                GCGCC TGC GGCGC                TTTCCAGGAAGGCAG  68 183
JJQ57_RS05120 NONE
JJQ57_RS05125 1115712 .. 1115754 + -10.4  -3.69354   CCGCCTGGCGTCGAT TCCGCGCCGGCGACCAGCGT TTC ACGCAGTTCCCTGGCGTGCA TTTCGCGTTCTCCCC  70 124
JJQ57_RS05155 1119455 .. 1119469 +  -5.6  -3.05596   TTTCACCGCTTCGCG               CAGGGC CTT GGCCTG               TTCGCTGACGGAGTC  47 55
JJQ57_RS05180 1123399 .. 1123409 +  -8.2  -3.30124   TGCAGGGCCAGATAA                 CGCC GTT GGCG                 TTATCCGCCCTACCG  60 75
JJQ57_RS05190 1126402 .. 1126427 + -14.7  -6.15828   CAACTCCGTGACTTG         GGCGGTGCCGT GCGA ACGGGACCGCC          TTTTTTTTTGCTGGC 100 80
        yedA NONE
JJQ57_RS05205 1128487 .. 1128512 +  -2.6  -3.05816   CCGGGCGCCTGACCG         GACG-TGCAGA AGTCG TCTCCAGCGTC         TTCAATACGGAATGA  41 50
JJQ57_RS05210 1129754 .. 1129812 +  -7.2  -3.63805   GCCACCAGCCTAGTA CGCCGATCGGGGCGCAGTCCGGCG GAAAGCCGGCG CGTCCGGCTGTGCTCGGCACGGCG TTTGCCGTATAACGT  62 28
JJQ57_RS05215 1130744 .. 1130780 +  -7.3  -4.13561   TGGCGAGCGCGAGGA  ACCGCC-GCCGC-C-CTG GTTG CAGTGAGCGGCTGGCGGA   TGTTTTTTCCCGCCA  72 1
JJQ57_RS05220 NONE
JJQ57_RS05225 1132779 .. 1132806 +  -5.4  -3.01712   CTGTCCGGACCTCTG        GCCGGC-GGCCGC GTC GCGTCCGGCTGGG        TCTTCGGCAGGAACA  47 490
JJQ57_RS05275 1144717 .. 1144736 +  -9.2  -3.65812   TCCAGTACATCGACA            GGGCGACG CAGG CGTAGCCC             TTCTGTTGCACGGCG  68 194
JJQ57_RS05285 NONE
JJQ57_RS05290 1146086 .. 1146103 + -14.1  -4.72272   TGCGGAAATGAAAAA             GCCCGGC GAAT GCCGGGC              TTTTTCGTGGAACGC 100 54
         fur 1147176 .. 1147207 + -17.4  -4.27316   CGCAACGGTTCCATG      CGAAAACGGCGACC CTGG GGTCGCCGTTTTCA       TTTTCCATTGAAGGA 100 44
        grpE NONE
        dnaK 1151685 .. 1151715 + -19.1   -2.8805   CCGGTACGCATGATC      CGCC-ACGCGGGAG CCTG CTCCCGCGTTGGCG       TGTCTGGAGGGTCCT  91 76
        dnaJ 1152923 .. 1152935 +  -2.6  -4.38154   CGCCGCGTCCGGGTT                CCGC GTGGA GTGG                TTTTATGCGACGTAT  62 65
        dapB 1153851 .. 1153880 + -14.3  -5.03314   ATGAATCGAAAAAAA       GCGGGATGACTCT TCAC GGTGTCATCCCGC        TTTTTTACACCTGCG 100 130
        carA NONE
        leuE NONE
        carB NONE
        greA 1159452 .. 1159467 +  -6.8  -2.55544   TCTAAGCGCGCTCCG              TTGCGC GCAG GCGCGA               TCAGTTGGCTGCTGG  48 36
JJQ57_RS05350 1159864 .. 1159883 + -13.6  -3.37344   AAGGCGTCTGAACCA            GGTCGGGA AGTT TCCCGACC             TTGGTTGGATGGGGC  77 30
        rlmE 1161020 .. 1161037 + -10.5  -2.74558   AAGGGTTACAGACAA             CGCCTGC GTGC GCGGGCG              CTTGTGTAGTACTTT  60 113
        ftsH NONE
        folP NONE
        glmM 1165276 .. 1165289 +  -2.4  -3.07443   CTTGATTTTGCTTGC               CAGT CTGGAA ACTG                TTGAGTAACATCTGC  41 36
JJQ57_RS05380 NONE
        secG 1166488 .. 1166506 +  -3.8  -3.14344   AAGTAAGAGAAAGGT             TTCTGCCG AGG TGGTGGAA             TTGGTAGACACGCTA  47 35
JJQ57_RS05390 1166588 .. 1166602 +  -9.2  -4.03234   TACCATATAAGCAAG               CCCCGT CCT GCGGGG               TTTGTCTCCGCAAGG  76 36
JJQ57_RS05395 1166755 .. 1166770 + -10.4  -5.10461   AACCAGTTTTTCAGG              GCCCCT TTTT AGGGGC               TTTTTGTTAGCTGGA 100 36
        rimP NONE
        nusA NONE
        infB 1171419 .. 1171464 + -12.5  -5.78622   GATGGCGAGTGCGTA ACCAC-AGCGCCCGGGCCGGCT TCC AGCTGTCCCGGGCGTTTGTCGC TTTTTTTTCCAGTGG 100 39
        rbfA NONE
        truB NONE
        rpsO 1173253 .. 1173275 +    -4  -3.87994   ACGAGGCGGGTATCG           GCGTCGGGCT TCC AGCTTCGCGC           TTTCTAGGAATCGAT  58 99
         pnp 1175481 .. 1175498 + -12.7  -4.54727   CGTGATCGATGAAAA             CAGGGCC CTCG GGCCCTG              TTTTCGTTTCCGCGA 100 48
JJQ57_RS05435 1176082 .. 1176095 +  -3.7  -3.12395   GTCGAGTAAGCGCCC               GGGCC GAAC GACCC                CTTTTCCCTCGTCAC  47 32
JJQ57_RS05440 1176337 .. 1176362 + -23.3   -4.7254   AACAGGTAGAAAGAA         GCCCCGCCGGG ATTG CCCGGCGGGGC          TTTTTCATGGGCGCT 100 40
JJQ57_RS05525 NONE
        sfsA 1197661 .. 1197683 + -12.7    -3.727   GCGGCCACTCGCTCA           GCGGCGTTC GAGCA GGACGCCGC           TTTCCATGTGGTGGG  81 62
JJQ57_RS05545 1201241 .. 1201270 + -15.7  -2.60512   CGACAGGCCGTTGGC       GCCCTCCATGCGCG CGC CGCGC-TGGCGGGC       TGCGTTGATCTTGGC  77 335
        alaC 1203566 .. 1203591 + -17.7  -4.42238   TGCTACAAGGAAAAA         CGCCGTTTTCC CTGG GGAAAACGGCG          TTTTCGTTAGCGTCC 100 52
JJQ57_RS05570 1204839 .. 1204852 +  -4.5  -3.53012   CGGATCGTGCAGTTG               GCG-GC TCA GCACGC               TTTCCAGAAGGACCC  52 119
JJQ57_RS05590 NONE
JJQ57_RS05595 1210247 .. 1210276 + -11.3  -3.71607   TGAAATCGGTTGTTC       GCCCCCGCGCACT GTTC GGTGCGCTGGGGA        TTTCGCTCGTGTTGG  76 38
JJQ57_RS05600 NONE
JJQ57_RS05605 1212045 .. 1212060 +  -4.6  -3.36766   CGTTGAAGGAGTCGC              CATGCG CATT CGCCTG               TTCGCTTTCTGTCTG  50 35
JJQ57_RS05610 1212951 .. 1212972 +  -2.9  -4.07568   GAAGGGCGCGAGGCC           TGGAGCCGCG TAT CGC-GCTACG           TTTTCGCGGGCAAAA  58 43
        mrcB NONE
JJQ57_RS05640 1220128 .. 1220144 +  -2.1  -2.89564   AGGCCAAGGTCAGCT              CCTGATG GAT CGACGGG              TCTATGCGCTGGCCG  40 21
JJQ57_RS05645 1220477 .. 1220505 + -18.3  -3.90112   AGCTTCGGCAGTAAA        GAAAAACCCGGCT ACA GGCCGGGTTTTTC        TTTGCTTCAAGCAAG 100 41
JJQ57_RS05655 1221507 .. 1221537 +   -11  -3.06501   CACCCATGCTCTGCC       GGGCAGCCAACCGA ATT TCGGTCGCCCGCCC       TTGGGTGGCCGTATA  66 249
JJQ57_RS05660 NONE
        ilvN 1223801 .. 1223813 +  -6.2  -3.14211   TCTGAACTGAAAGCA                GGCC CGCGA GGCC                TTACTGAAGGGGAAT  51 36
        ilvC 1224867 .. 1224898 + -19.6  -3.67775   GGCTCCGGCGACAGA      CGAAGAAACGCGGC CCCG GCCGCGTTTTTTCG       TTCTTGCCTGGCGAT 100 43
        pssA 1225829 .. 1225843 +  -5.6  -2.78384   AGCTGATGTAATTTC               CAACGG GCT CCGTAG               TCTACTGGCACAAAG  46 35
        msrP NONE
        msrQ 1227956 .. 1227973 +  -2.6  -4.82548   CAGCAACGCAAGTAA             CACTCG TGAATT CGAGAG              TTTTATCTCTTTTTA  74 480
JJQ57_RS05690 1229583 .. 1229597 +  -2.8  -3.16564   ATCACCTCCTTAATC               GAAGAT CTC AGCTTC               TTCATAAGCTCCCAC  44 29
JJQ57_RS05695 1229718 .. 1229728 +  -5.4  -2.81464   ATCTGCCCAGACCCA                 CCAA TTG TTGG                 TGTGCTGCGTGATCC  44 23
JJQ57_RS05700 1229845 .. 1229882 + -10.1  -3.34398   ACAATCGTCGAAAGC   TCAGAAATGAATGTTCG TGAA TGAACATTGATTTCTGG    TCTTTGCACCAGAAC  66 46
JJQ57_RS05705 1232949 .. 1232970 +  -5.9  -3.33162   TGACCATATAACACC           CAAACAATC TGAT GATTGTGTG            TTGTAAGGTGAAGTC  52 34
         rrf 1233207 .. 1233242 +   -17  -4.07568   CGTCAAGCTCCTATC    CCAAAACCCCTGGTCA GCGA TGACCGGGGGTTTTGC     TTTTGCGCGCGGAAA 100 33
JJQ57_RS05715 NONE
JJQ57_RS05720 NONE
JJQ57_RS05725 1236982 .. 1237005 + -16.8  -4.45945   ATCGGCAAAAAGAAA          CGCCGCTTAC CTGG GTAAGCGGCG           TTTTCGTTCATGCAT 100 48
JJQ57_RS05755 1245499 .. 1245535 + -13.8   -4.8667   CGAGCGACCGCTCAT   CCGCTGCAGCGAGCGCGG CGA CCGCG-TCGTT-CGGCGG   TTTTTCTCGACTATG 100 88
JJQ57_RS05760 NONE
JJQ57_RS05765 NONE
JJQ57_RS05770 1248367 .. 1248397 +  -4.5  -2.83403   GGGGGCGAAACCGTC       CCCGCGCATCGCC TAATT GCCGGTGCCCGAG       ATTTGATCGAAGAAC  44 117
JJQ57_RS05775 NONE
        rimI 1249778 .. 1249800 +  -6.9  -2.56914   ACCAGCATTCCGATT           CTCGCCTGC ATACC GCAGGCAGG           TCCCTTCATGCGGTA  48 118
JJQ57_RS05785 NONE
         can 1251810 .. 1251820 +  -8.2  -3.21099   CAGTATCGCTTGAGT                 CCGC TGG GCGG                 TTGCTGCTGAGAGAG  58 5
JJQ57_RS05800 NONE
JJQ57_RS05805 1255073 .. 1255090 + -14.1  -5.24129   GACGTTGATCGTAGA             GCCCCGC AGAT GCGGGGC              TTTTTTATGCGAACC 100 45
JJQ57_RS05815 1257190 .. 1257231 +  -4.3  -3.96624   TGGCGCACTGTCCTT TGCAGCAATTG-CCTGTGCG CGA CGCACAGGGCTCCCGTTGCA TTTCTCATCCCACTC  61 348
JJQ57_RS05820 1258368 .. 1258380 +  -6.2  -3.25823   TGGCCTACATACACA                GCCG TCCAC CGGC                TTAATCTGCAGGACC  52 62
JJQ57_RS05910 NONE
        prfA NONE
        prmC NONE
JJQ57_RS05925 1289751 .. 1289782 +  -7.2  -4.27316   GCCGTCTGCGGGCAA      CGCC-ATGGCGGTTG AGT CGGCCGCGGTCGGCG      TTTTCGATTCCGGGG  76 11
JJQ57_RS05930 1290587 .. 1290599 +  -2.7  -2.91086   CAGCGATTTTTTGAA                CTAAA GCG TTTGG                TCTAGTATCTGCTTT  40 60
        pagL 1291226 .. 1291242 + -10.8   -4.7497   GCACGGTCGAAAAAA              GCCGGG TTCAT CCCGGC              TTTTTCATGCCTGCG 100 44
JJQ57_RS05960 NONE
        hemH 1298105 .. 1298115 +  -6.8  -2.50016   GCGCCTGGCCAGGCC                 GCTC TGA GAGC                 CTGTTCATGATCCGC  48 19
JJQ57_RS05970 1299858 .. 1299890 +    -4  -3.18023   CCCGGTACGGCACGT     TCTGCGC-GGCGCCG CTAC CGGTGCCTGCCTGGG      TGTTGCTGGTGGTCC  45 119
JJQ57_RS06015 NONE
JJQ57_RS06020 1309070 .. 1309083 +  -2.3  -3.03124   TGCCGGCTCGCCCTG               TCCGG AGGT CCCGA                TGTTCGCCCGTAGCC  41 75
JJQ57_RS06025 1309581 .. 1309601 +  -5.4  -2.57132   TGAGCCTCGCCGCGC           GCCGGG-AG TAAA CTGCCTGGC            CTTATCCCGCGCCGG  43 38
JJQ57_RS06030 1309962 .. 1309977 + -11.8  -5.26875   CCATGCAGCGAAAAG              CCCGCC CTTC GGCGGG               TTTTTTCGTTGCGCG 100 46
JJQ57_RS06035 1310625 .. 1310640 + -11.8  -3.67597   TCCACAAATGAAAAA              GCCGCC CGAA GGCGGC               TTGTTCCGTCGCGCG  75 42
JJQ57_RS06045 1313629 .. 1313646 + -14.1   -4.7373   GGCGGTAACGAGAAA             GCCCGGC GGAT GCCGGGC              TTTTTCATGCGCTCG 100 44
JJQ57_RS06055 1314511 .. 1314527 + -15.1  -3.92592   TTGCCCGATGGAGAA              GCCCGGC GGC GCCGGGC              TTTCGTCTTCAGGAT  91 100
JJQ57_RS06065 NONE
JJQ57_RS06070 1316242 .. 1316299 +  -3.1  -3.30124   CTGTTGTGTTGAGGC GGCCG-CCGCTCAGTCGGCCGCCAGTTC GAA GACCTGCCAGCGCACCGAGCTGACGCCC TTCTCCAGGCTGACC  46 29
JJQ57_RS06080 1318417 .. 1318466 +  -8.4  -3.29471   CCGCGAAACCGCGAC CCTGCTCGCCGGCGCGGGCGGCC TCGAT GGCGGCGT-TGAGGGCGAGCAGG TTGGTCTGCTCGGCG  58 447
JJQ57_RS06090 1321161 .. 1321184 +    -6  -3.77303   CGGCCGGCGCGCCGA          CAGGC-TTACC ATC GGAAACGCCTG          TTGTGTATTTCCGTA  60 66
JJQ57_RS06095 1322757 .. 1322801 +  -5.5  -2.58638   TCTCCGGCTCTCGTG GGCGAGTGGTGGGGCAGGCAT CCG GTGCCTGCCTGAACTGTAGCC GTTCCTATGCATTTT  46 493
JJQ57_RS06125 1331806 .. 1331833 + -14.2  -2.62263   ACCCTTTTCGCAATG        CGCACTATCGTC TCCG GGCGGTAGTGCG         TCATCTGCCCGAGGT  74 40
        cdrB 1333591 .. 1333632 + -11.7  -2.53759   GTTCCGGAGGCTGCT G-ACGGAGC-CCCTCTCCG GTTCTG CGGAGAGGGAGGTCCGTGC TCAATTCCGAGTGTT  65 56
JJQ57_RS06135 1334285 .. 1334303 + -13.1  -4.44667   CAAGGTGCGAGAAAA             GCCCGGC TCGAT GCCGGGC             TTTCTTATTGCCGAG 100 58
JJQ57_RS06145 NONE
JJQ57_RS06150 NONE
JJQ57_RS06155 NONE
JJQ57_RS06160 NONE
JJQ57_RS06165 1342584 .. 1342595 +    -3  -2.54371   GCCGATGTCGAGACC                TTCT CGGC AGAA                 TACGTTGGCGTGGTT  39 512
JJQ57_RS06175 1344544 .. 1344597 +  -5.7  -4.83615   TGGTCAACCGCAAGC GCTGATCGGCCGCTGGCTATCCCCG TCAG CGGGGATAGCCACAAGCCTTGCGGG TTTTTCTGCCGGGTG  82 21
JJQ57_RS06180 1345489 .. 1345518 + -19.5  -3.61517   CCTGTTGTCCGGCAA       TGAAAAAGGGCCC GTTC GGGCCCTTTTTCA        TTGTTCCGCCGACGT 100 83
JJQ57_RS06190 NONE
        katB 1349469 .. 1349489 + -15.4  -3.34109   GATTGATCGCAACCG            GGGCGGCC ATCCA GGCCGCCC            TTCCTCTATCGGTTT  84 35
JJQ57_RS06200 1350087 .. 1350097 +  -4.6  -2.63301   CAATGTTCGGAGGAG                 GCCT GCT GGGC                 TAGTCTGGAGGTGTC  43 48
JJQ57_RS06205 1350420 .. 1350436 + -15.1   -4.8048   CAACGGTATGAAAAA              GGGCGCC TCC GGCGCCC              TTTTTCATGTGGGCA 100 52
        radA 1352827 .. 1352864 +    -9  -2.90714   GAATTCGATCGGCGG   TGCCGTCCGTCCCCGCC TGTGC GGCTGGATCGG-CGGCA   TGTGTCCGAGTTTGA  58 492
JJQ57_RS06225 1353474 .. 1353489 + -11.8   -4.8048   CAGGCCCAGGAAAGA              GCCCGC TACG GCGGGC               TTTTTCGTGTGCGCG 100 46
JJQ57_RS06230 NONE
JJQ57_RS06235 1356121 .. 1356151 + -16.8   -4.4017   CTGAATCCCCATCCT       TCCGCGGGCCACGT CTG ACGTGGCCCGCGTC       TTTTCTGGAAGTTGC 100 37
        yjiA NONE
JJQ57_RS06245 1357608 .. 1357639 + -15.2  -3.18321   CTTCCTCGGAGGAAA      TGAAAAAGCCCGGC ATTT GCCGGGCTCTTTCG       TCTTGCCTTGTCGCT  83 57
        mexC NONE
        mexD NONE
        oprJ 1370052 .. 1370076 +  -9.3  -2.58579   GCTAGCGGGTGGCAA         CTGCC-GCCC GCTCAA GGGCTGGCAG          GTTGTGCGGGGTTCG  56 65
        ettA 1372755 .. 1372781 + -20.8   -5.1675   CGCGCCCTCGAGAAA         CCGCCCGCCGGC GTT GCCGGCCGGCGG         TTTTTTCATGCCTGG 100 42
JJQ57_RS06295 1373923 .. 1373953 +  -5.4  -2.60075   GACCTGGCGGAGGCC      TGCCGGTGAGCGCC AGCCC GTCGC-C-CCGGCA      ATTGCTTCACGAGGC  43 17
JJQ57_RS06300 NONE
JJQ57_RS06305 NONE
JJQ57_RS06310 1378030 .. 1378047 +  -9.1  -3.67989   CACCGATCTTTCTTC             GGAGGGG CAAC CCCCTTC              TTTCGCTAGGCTTTT  71 193
JJQ57_RS06315 1378957 .. 1378981 + -22.9  -3.57263   CCGTAATCCGGGCTG          CCGCTGGCGCC TTC GGCGCCAGCGG          TTTCGCGCTCCCGCT 100 35
JJQ57_RS06320 1380619 .. 1380644 + -21.9  -3.63627   CCGTAGGCAGAGAAA         GGGCCTCCCCC GTCA GGGGGAGGCCC          TTTCGCATCTGGCGC 100 47
        gdhA 1382254 .. 1382274 + -18.3  -4.93365   CATAGAGGAAAAAAA            CGGGGCTCC AGG GGAGCCCCG            TTTTTCCTTGTGGCG 100 49
JJQ57_RS06365 NONE
JJQ57_RS06370 1391212 .. 1391226 +  -8.5  -3.31792   ACGAAGCCCAGGCTG               CGGCG CACTT CGCCG               TTGTGGAAGTAGTCG  58 152
JJQ57_RS06385 1394048 .. 1394060 +  -6.2  -2.61264   TATATCGGTGAGATA                GCGC CATCC GCGC                CTTGTCAGTGGCGCG  46 30
JJQ57_RS06390 1396617 .. 1396653 + -22.4  -3.56643   CGCGTTGCCGGAACC   TGC-CGAGGGCGGGGCT GGAA AGCCCCGCCCTCGTGCG    TTTCAGCCCTGTGGA 100 47
JJQ57_RS06395 1397201 .. 1397214 +  -3.7  -3.40403   TTTCTGGATAAAAAC               CGCCG GCCG CTGCG                TTATACTCGCCGCCC  51 139
JJQ57_RS06400 1397772 .. 1397810 + -22.5  -3.61536   CTCCAGTGTTTCGCT  CG-CGCCGCCCGGCCGTT GTAA AACGGACGGGCGGCGGCG   TTTCCGGCTTGCGTT 100 48
JJQ57_RS06405 1398338 .. 1398348 +  -5.4  -2.79796   TGCGCCGGTAGGGGG                 GAAG GGC CTTC                 TGTGCTAGGCTGGCC  44 52
JJQ57_RS06410 1399042 .. 1399067 + -20.5   -4.8622   CAGGAAGGAGTGAAA         CGCCCCGTCGA CGCA TCGACGGGGCG          TTTTTCATTGCGGCA 100 54
        rplU NONE
        rpmA 1403636 .. 1403655 + -11.4  -5.72622   TAGCTCGCTGAAAAA            GCCCTGTC TCGC GACGGGGC             TTTTTTGTTTCTGCG 100 45
        cgtA 1404956 .. 1404970 +  -4.2  -3.09834   ACGACGGCGACGGTC               CGGAGA TCT TCTACG               TTCCCTGATGGCGTG  45 3
JJQ57_RS06445 NONE
JJQ57_RS06450 1406671 .. 1406685 + -12.8   -5.4505   GTGGGCAATAAAAAA               CCGGCC ATT GGCCGG               TTTTTTATTCGAGCA 100 53
        murJ 1408824 .. 1408839 +  -3.9  -4.30441   GCGCGTCCGGGCTGG              CGGCG GGATCA TGCCG               TTTTGCCTGTTGTCC  66 42
        ribF NONE
        ileS NONE
        lspA NONE
        fkpB 1413639 .. 1413679 +  -4.6  -3.40371   CCGGCCTGAACCGTC GGTCGCTGC-GCCCTTCCC AAGC GGGGAGGGCGGTAGCAAGG  TTCATTCGTCCAATC  53 32
        ispH 1414679 .. 1414701 + -17.8  -4.05788   CCGTGCGCAATAAAA           GAGCCCCTCT CGT AGAGGGGCTC           TTTCGTTTCAGCGCC 100 42
        thiO 1423303 .. 1423322 + -13.6  -4.36595   GAGCGAAAACCAAAA            GGCCTGTC TTCG GACAGGCC             TTTTCACTTTCAGTC 100 42
        rluD NONE
        pgeF 1429635 .. 1429645 +  -2.4  -2.71011   GGGCTTTTCTTCATC                 AGGG ACA CCCA                 TCGTTCCGGCCCGCT  39 134
        clpB 1432271 .. 1432288 + -14.1  -4.72986   GGGCGGACAGGGAAA             GCCCCGC TTCG GCGGGGC              TTTTTCATGGGCGTC 100 50
JJQ57_RS06570 NONE
JJQ57_RS06575 1432644 .. 1432655 +  -2.2  -2.75712   CTCTACCCCGACCAC                CTCA TACT TGGG                 TCGTTAGCTCAGTCG  39 27
JJQ57_RS06580 1432842 .. 1432861 + -11.4  -4.84918   TGTCAATATGGAATA            GCCCGCCT ATTT AGGTGGGC             TTTTCTGTTTCTAAG 100 139
JJQ57_RS06600 1438297 .. 1438321 +  -5.1  -4.25104   GTGGAGCCGGATGGC          TAATCGATACA GGC TGAATTGATTA          TTTTCATGGAGAGCG  68 4
JJQ57_RS06650 1445491 .. 1445506 +  -4.6  -3.24976   TCCGTCTTAATCAAC              TGGTCC ACCA GGCCCA               TGTCTTTCGCACATT  49 185
JJQ57_RS06715 1455284 .. 1455295 +  -7.2  -3.04792   GGATGGATATATTCG                CCGC CTGA GCGG                 TGTTGACGCTGATAC  51 433
JJQ57_RS06770 1464714 .. 1464729 +  -3.3  -3.37796   TGTAAAACTGATTTA              TAACC ATAGGG GGTTA               TTATGAGTGGTGAAA  46 143
JJQ57_RS06775 1465986 .. 1466000 + -11.4  -2.57931   GTAGCCGAAGAACAC               CACCCG CAC CGGGTG               CTTCTGCCCGATCCG  61 520
JJQ57_RS06900 NONE
JJQ57_RS06905 1488766 .. 1488784 +  -2.4  -3.94891   TGTTGCAGCAGGAAG             TGCTCG GTTGGTG CGAGTA             GTTTTTTTGCTGTGT  54 519
JJQ57_RS07025 1510547 .. 1510578 +  -2.3  -3.05463   CGCATGACTAGACTC     CTTGCCGG-CTCCCG CCGG CGAGAGATCGG-AAG      TTCAATGAAGGGGCT  41 418
JJQ57_RS07085 1525234 .. 1525265 +  -9.4  -3.40639   AAGATGTCGTCGTCG      CGGGTGGTCTGC AGGGTCGG GCGGACCACCAG       TTGGTTGATACGGTT  63 462
JJQ57_RS07110 NONE
JJQ57_RS07115 NONE
JJQ57_RS07120 1529214 .. 1529272 +    -3  -4.09685   CATTCGCCAGGTTCA TGGC-GGGCGGCGGCTGACTTGCGTCAG TGTTT CGGACG-AAGCTGGCCGCGATCCTGCCG TTTTCCCAGGTGAGG  58 49
JJQ57_RS07125 1529511 .. 1529535 + -14.9  -3.19668   GCGTCCCTGAAGGAA          CGGGCCTGCCG GAT TGGCTGGCCCG          TTGCGTTCAATGCTC  80 31
JJQ57_RS07155 1534878 .. 1534901 +  -5.2  -2.52464   GCTGGGTGCGCTTGT          CGGCCAAGAA GTCG TCCTTGGCCA           TCCCTTCCACGAAGC  43 217
JJQ57_RS07170 1536485 .. 1536518 + -16.1  -2.71263   TGGACATCGGAAGGG     CG-CGACGGCAGCG CGGGTTC CGCTGCCGTCGCCG     TCCTTCAACCCAGTT  81 211
JJQ57_RS07180 1539802 .. 1539826 +  -9.1  -3.04144   GTGCCTGCCGAGGTC          GTCGCGGTCGC GCA GCGGCGGCGCC          TGTTCCAGGTAGGCG  57 425
JJQ57_RS07190 NONE
JJQ57_RS07195 1543922 .. 1543952 + -22.6  -2.75712   TCCACCGGTGAAATC       GCGCCCCGTTCCCG GCA TGGGGACGGGGCGC       TCATTCCCTCCGTGA 100 30
        wspA NONE
JJQ57_RS07205 NONE
JJQ57_RS07210 NONE
JJQ57_RS07215 1548561 .. 1548575 +  -5.6  -3.20382   ATCGATGCGTTGCTC               CAGGGC TGC GACCTG               TTGCTGCGTATCGGC  51 307
        wspR 1552766 .. 1552809 + -10.8  -3.05384   GGTGCCGCCGGCCCC GGCGGGCTGAGCGGCGCGCGG CGG CCATGCGTCGC-CGGCCGGCA TTAAATAGAGGCCGG  66 16
        prfB 1554096 .. 1554108 +  -4.8  -4.11371   CGCCTTGCCTGGCCG                GCGT TCGCT ACGC                TTTTCGCCCCTGTTG  65 128
        lysS 1555702 .. 1555715 +  -9.5  -5.14563   CAGTCCATGGAAAAG               CCGCC TTCG GGCGG                TTTTTTCATGGCCGC 100 50
JJQ57_RS07245 1556615 .. 1556630 + -11.8  -4.72272   TGACCTGAGCGTCAA              CCCCGC CATG GCGGGG               TTTTTCATACCCGAA 100 38
JJQ57_RS07250 NONE
JJQ57_RS07255 1558561 .. 1558573 +  -4.7  -3.36515   ATTCTCTGACCGTTC                CCCGC CGT GCCGG                TCTTTCCCGGTGCGC  50 32
JJQ57_RS07260 NONE
JJQ57_RS07265 NONE
JJQ57_RS07270 NONE
JJQ57_RS07275 1561142 .. 1561161 + -16.4  -4.19953   CCCGCCCATGAAAAA            GCCCCGCC GGAT GGCGGGGC             TTTTGGGCTTCCGTA 100 58
        cadR 1565867 .. 1565892 +   -14  -3.57144   CCGCGGATACATCTC         GTGCAGCGCG GCGAGG CGCGCTGCGC          TTTCGACGTCCAGCG  78 262
         ppc 1568897 .. 1568914 +  -6.2  -3.73775   CTTGGACAGCCTTTT             CGGCGC CATACA GTGCCG              TTTCCTGCAAATACG  60 95
         adk 1569651 .. 1569680 + -20.7  -3.53012   TCCGCAGCGCTGTAG       CACCGACGGCCCG CTTG CGGGCCGTCGGCG        TTTCCGGGGCGGCGA 100 41
        tsaB 1570425 .. 1570435 +  -8.2  -2.71263   AGCGCCCTGAAAATG                 CCGC GCA GCGG                 TAATTGCCAAGCCTT  54 31
JJQ57_RS07320 1570834 .. 1570861 +    -4  -2.88536   CGGCCTCGACCTCTA        CGCCTGAGCG-GC TCT GCGCGCTCCCGTG        GTTTCCCTTCCTTAT  44 19
JJQ57_RS07325 1571740 .. 1571768 +  -3.8  -2.90496   AGCCGGTGCTCGACG       CTCCGCCGGCCTG CGCC TAGGCTAG-GGAG        TCCTTTCCCCGCCAC  44 40
JJQ57_RS07330 NONE
JJQ57_RS07335 NONE
JJQ57_RS07340 NONE
JJQ57_RS07345 1575759 .. 1575796 +    -7  -3.14564   TCTGCCCGGCCTGCG   CGGCCATCAGGCGGGTC AGGGC GAT-CGCCTCGTGGCTG   TTGATCAGCCGGTGG  52 316
        mexJ NONE
        mexK 1580750 .. 1580777 +  -9.8  -3.62046   GTCACCGCCCTTGAG        GATGCCCTTGGC GTCG GCCACGGTCATC         TTCTTCACCGCCTCC  67 381
JJQ57_RS07380 NONE
JJQ57_RS07385 NONE
JJQ57_RS07390 NONE
JJQ57_RS07395 1589309 .. 1589343 +  -5.7  -3.53811   ACGGAAGCGCCAGTG    GCC--GTCGCGCTGCTC GCC GAGCAGCCAGACCAGGC    TTTCGCAACCGTGCA  54 257
JJQ57_RS07425 1593502 .. 1593525 +  -4.5  -3.56643   CTCGCCAGGTGCTGG          TGTAGCGGC CTGCCA GCCGCTAGG           TTTCCGCGGTCTCGG  53 21
JJQ57_RS07440 1596480 .. 1596511 + -21.8  -3.85698   CCCGCTGGGTGTGAA      CGAAAAGGGATCGC CGCG GCGATCCCTTTTCG       TTTCTCCGCGCAGGC 100 27
        rpsB 1602438 .. 1602475 + -19.3  -3.89215   GTTCAGACGTCCGAC   GGTGCGCAGGAAGGGGGC TAG GCCCCCTTTTTGC-CACC   TTTGAGTTTCTGCCC 100 50
JJQ57_RS07465 1603443 .. 1603470 + -14.8  -3.16564   ACTGTCGCCCCGGAA        GAGGCTGCCCGC TGAT GCGTGCGGCCTC         TTCGTCAAATGGGGA  80 55
        pyrH NONE
         frr NONE
        uppS NONE
JJQ57_RS07485 NONE
JJQ57_RS07490 1607660 .. 1607673 +  -3.7  -2.73875   CCGGGCAATGGTTGA               CCCGG CACG CCGGC                TAGTCTTCGGACGGC  42 9
        rseP 1609068 .. 1609094 + -16.7  -3.36059   AGTCATGTTGAATTC         GAATCTGCCGC CCTTT GCGGCAGATTC         TCTATTTGTCAGTTG  88 39
        bamA 1611507 .. 1611517 +  -5.4  -2.95896   CAGTTCTCCCTGGGC                 CAGA CCT TCTG                 ATTTGTACGTAGTAC  46 14
JJQ57_RS07505 1612054 .. 1612070 +  -4.3  -2.52516   CCGCCAGGTGATCGA              GCGGATG AAC CAGCTGC              GTTGATGATGAGCAC  41 4
        lpxD 1613118 .. 1613133 +  -4.6  -2.80411   GACCTCAAGCGGTGA              CGCTTC ATCT GATGCG               TAATTGACGTTTTTT  44 7
        fabZ NONE
        lpxA NONE
        lpxB NONE
        rnhB 1616265 .. 1616278 +  -3.8  -2.87132   ATTTCCTTCGGCTCG               CACG TCATTC CGTG                TGTGTCCGAAACACG  44 150
JJQ57_RS07535 1617840 .. 1617871 +  -9.3   -4.8384   GAACCTGTAGCTTTG      CCACCGGGCCCGG TACAAT CCGGGCCTTGTCG       TTTTTGCGTTATTTC 100 93
        dnaE 1621431 .. 1621482 + -11.7  -3.14931   ATCGTTAATCGCGAT GGGCGATAACGCCGTTGTTCCG-CGC TCT GCGGCGGGAAAAC-GCGG-ATCGCCC TTGCTCCCGGCTCGA  70 33
        accA 1622553 .. 1622570 + -14.1  -3.32844   TGGTACGATCGACAA             GCCCGGC ATTC GCCGGGC              TTGTCGCATGAGGAG  77 55
        tilS 1623961 .. 1623992 +   -13  -4.05788   TCCCGTCTTGTACTG      CTCCCGCCGATTCC CTCC GGAATCAGCAGGAG       TTTGCTTTGCCCACG  86 65
JJQ57_RS07555 NONE
        kdsA NONE
         eno 1627924 .. 1627943 +   -15  -4.77165   GTCTGGTACGGTGAA            GGGGTGGC AAGA GCCACCCC             TTTTCTTCTCAAGGA 100 46
        ftsB NONE
        ispD 1628986 .. 1629017 + -21.8  -2.71731   CACTGAACCCTGGCA      CAAGAAAGCCGACC CGAG GGTCGGCTTTCTTG       TCGTTGCAGGCTCGC 100 35
JJQ57_RS07595 1632710 .. 1632743 + -15.9  -3.53811   TTCATTACTGACAAG     CCGTCGCGGCGGGCC CTGC GGCTCGCCACGACCG      TTTCACGGAGGTCAC  86 30
        fghA 1633652 .. 1633673 + -10.1  -5.14965   TCCGGGGTAGAATCA           CGCCCTGAT TCCA ACCAGGGCG            TTTTTTCATGCGAAT 100 67
        ispF 1634146 .. 1634156 +  -2.4  -2.57344   GTCGCTTTGCTGATG                 GCCC GAT GAGC                 GTTCTCGGCGAACTC  38 17
        truD NONE
        surE NONE
JJQ57_RS07620 NONE
JJQ57_RS07625 1637600 .. 1637636 +  -8.6  -3.06302   CATGTAGGTGAGCGG    GTCCGGGCGTGTCC AGCGGGAAA GGAATCGCCCGGGC    TTGAGTCGAACTCAT  57 63
        rpoS 1638697 .. 1638712 + -11.8  -5.43414   CAGGCCCACGGAAGA              CCCGGC GTTC GCCGGG               TTTTTTGTGTCTGCT 100 51
JJQ57_RS07650 NONE
        recA NONE
        recX 1645486 .. 1645503 +  -7.7  -3.07575   CAGCGACGATTGAGC             GCGTGCCG GAC CGGCA-GC             TTCAGTCCCAGTTTT  54 28
JJQ57_RS07675 1650999 .. 1651009 +  -8.2  -3.54158   TCCAGCATGGCGACC                 GCGC GGC GCGC                 TTACTTCTTGCCCTG  65 378
JJQ57_RS07710 1656744 .. 1656762 +  -5.3  -2.67803   CAGGGCGGGACCGGC            CT-GGACG ATGG CGTCCCAG             TGGATTTCCTCGAAG  45 293
JJQ57_RS07720 1658172 .. 1658182 +  -2.4  -3.50853   CTGCAACAAATGGAG                 ACGG TTC CCGC                 TTCTCATTGAGAGAC  47 5
JJQ57_RS07725 1658655 .. 1658678 + -18.2  -5.10461   CGCGGACATGAAAAA          GCCGGAGGCA GCGA TGCCTCCGGC           TTTTTCTTGCGTGCG 100 45
JJQ57_RS07735 NONE
        ykgO 1661101 .. 1661128 +  -9.8  -3.14132   CTTCACGGTTTCCGC        CGAGATCGCCAG CTTG CGGGCGATCTCC         TTGCTCGAGCAGCCG  62 152
JJQ57_RS07750 NONE
JJQ57_RS07755 NONE
JJQ57_RS07760 1665611 .. 1665626 +  -2.4  -2.74523   GAGGCCAGGGCCACG              CCGACG ATGC TGCCGG               TACTGTTGAGAATCC  38 221
JJQ57_RS07775 NONE
JJQ57_RS07780 NONE
JJQ57_RS07785 NONE
JJQ57_RS07790 NONE
JJQ57_RS07795 NONE
JJQ57_RS07800 1676312 .. 1676342 +  -4.7  -3.18264   ACGGCCGGCCAGCCA      GGGCATGCTGGTTGG CCA CCG-CCAGCA-GCGC      TTCGTAGGTGAACAG  47 426
JJQ57_RS07810 1678490 .. 1678523 + -17.5   -3.2963   CACGGGATTCTCGAC     TGCGGCGGCGCCACCG GCT TGGTGGCGTCG-CGCA     TTATGCCCGGATCGT  91 393
        ybaK 1684523 .. 1684540 + -10.5   -2.6648   TGAGCCGCTAATCCC             GCCGGCC TAGC GGTCGGC              ATTCGTCTTACTTTT  59 38
        glpK 1686203 .. 1686233 +  -2.5  -2.71011   GCACTGTATCGCCCA      TC-CCGGAGCCTGC GGCG GCATGCTGTGGCGA       TCGTTCCCAGGAGGT  39 170
JJQ57_RS07850 1687097 .. 1687148 + -23.2  -3.16564   TCCACATACCGAAGC CCTGATCCGTAGAGTGAATAACCG CTTG CGGTTATCCGCCCTACGGATCGGG TTCCTGGCATGCACG 100 83
JJQ57_RS07865 1690059 .. 1690073 + -11.4  -3.19389   GGCGTTGTTGCGTTC               CTGCGC CTC GCGCAG               TTCCTCGGTGAATTC  66 265
JJQ57_RS07875 1691973 .. 1691995 +  -7.6  -3.13908   GCCTGGAGCGCCAGG           CCGCCTGAGC GCG GATCAGGCCG           TTCGCTGCTTCAGTT  56 18
        mmsA NONE
        mmsB NONE
JJQ57_RS07900 1697945 .. 1697966 +  -8.7  -2.67143   AGCCCGGCGACCCGC           TCCAGCAGC CGGT GCTGCTCGA            TCATGTCGTCGGTCT  52 231
JJQ57_RS07915 NONE
JJQ57_RS07920 1700447 .. 1700479 +  -8.4  -3.15544   GTCCCAGCCGAACAG     CTCGGCGGCGTTGCGG CTG CTGCT-CGCCGCC-AG     TTCCTCGGCGTCGAC  58 44
        ptsP NONE
        pfkB NONE
JJQ57_RS07945 1708173 .. 1708224 + -12.9  -3.61398   GTAGGGCGAATAACG CCGCAGGCGTTATCCGCCGATAC TCCGGC GAACCGGCGGATAACCGCAGCGG TTATTCGCCCCAGCG  77 89
JJQ57_RS08065 1739104 .. 1739121 +  -7.7  -3.28712   CCATGGTCCTTCTCG             CGG-CTGC CCA GCAGGCCG             TTGTAGCCCAGCCGC  56 465
JJQ57_RS08075 1744479 .. 1744497 + -10.2  -3.60627   GAACGCGAGAGTAAA             GCCGAGCG TCG CGCTAGGC             TTTCCGATACAATAC  70 52
        grxD 1744912 .. 1744928 + -10.8  -5.13354   GCATCCGACGAAGAG              CCCCGC CTTGT GCGGGG              TTTCTTTTTTGTCCG 100 46
JJQ57_RS08085 1746150 .. 1746175 + -13.2  -3.25015   GCGGGCAAGAAAAAA         GCGCCGACGG GGCAGG CCGCCGGCGC          TTCGTCGTGGTTCCC  73 50
JJQ57_RS08100 1747991 .. 1748008 + -14.1   -4.7373   CGCGCGTTGGAAAAA             GCCCCGC TTCG GCGGGGC              TTTTTCATGGGCTCG 100 54
        motY 1750966 .. 1750982 +  -2.9   -4.2349   GTTTGAGTCGCGCAA              ACGATAG AAT CTGTCGC              TTTTGCGTCTAAAGC  61 35
JJQ57_RS08120 1752313 .. 1752353 +   -30  -2.77899   TGCGCCGCCTGAGAT  GGAACGAAGAACCCCGGC CATGA GCCGGGGTTCTTCGTTCC  TGATTGCTGAAAGCG 100 47
        mexP NONE
        mexQ NONE
        opmE 1758938 .. 1758962 + -11.3  -3.06915   TCGCTCCTGATCAGC          CGTCGGCGGCT TCC GGCCGCCGGCC          TTCGCTCGACTGCCT  66 31
JJQ57_RS08145 NONE
JJQ57_RS08150 1760053 .. 1760069 + -10.9  -2.75844   GCTGCATTGCTTGAC              CTTGCCA CCG TGGCAAG              CTTTACGGTCGCCCC  63 365
JJQ57_RS08155 NONE
JJQ57_RS08160 NONE
        purB NONE
JJQ57_RS08170 NONE
JJQ57_RS08175 1766323 .. 1766338 + -11.8  -4.25104   CGCACTGGTGTTCAG              GCCCGC TTCG GCGGGC               TTTTCATGGCCGCCG  91 140
        apbC 1786369 .. 1786391 + -19.2  -3.59979   CGACTGAGGCGCTCG           GGCAGCCGTC GGC GACGGCTGCC           TTTGCCCTGGGGCGG 100 34
JJQ57_RS08260 1787053 .. 1787069 + -10.8  -5.19261   TTTCGACACCGGAAA              CCGGGC CTGGC GCCCGG              TTTTTTCATGCCTTT 100 51
JJQ57_RS08265 NONE
JJQ57_RS08270 1788844 .. 1788875 +  -7.3  -2.62263   CGATGACTTGGCATC      TAGCGGTGATTGC ATTATC GTATTCGCCGCTA       TAATGTCAGCCGGAT  51 61
JJQ57_RS08275 1788973 .. 1788990 + -14.1  -5.10461   CAGTCGCATAAAAAA             GCCCCGC TTCG GCGGGGC              TTTTTATTGCCTGCG 100 39
JJQ57_RS08285 1792414 .. 1792433 +   -15  -4.56133   TAGCCGCTTCTCGAG            GACCCGGC GGAT GCCGGGTC             TTTTCGTTCTTGCGG 100 38
        ampD NONE
        ampE 1794086 .. 1794103 +  -9.1  -2.87344   GACTCCGTGCGTCAA             TGTCGCC ACGC GGCGGCA              TCTCTCAGAACGATA  58 160
JJQ57_RS08300 1796149 .. 1796183 +  -3.6   -4.7497   AACGCCTGATCGGTG    CGTTCCGGGTGTAGGC ACAAG GCCTGCGC--GGGACG    TTTTTCGTCCATCCG  73 12
JJQ57_RS08305 1797801 .. 1797818 +  -8.3  -4.81551   CCTCTGTTACGAAGA             GCCCCGC CTCG GAGGGGC              TTTTTCATGTCGCTC  88 49
JJQ57_RS08310 1798339 .. 1798357 + -11.6  -4.86731   CTACGGATGGAAAAA             CGCCCCGC TCG GCGGGACG             TTTTCTTTGGCGGCG 100 46
JJQ57_RS08330 1804340 .. 1804365 + -12.6  -3.55444   TCGCTCCCCACGAAA         GCCCCATTCC CCCTAC GGGATGGGGC          TTTCCCGCATCCAAG  77 50
JJQ57_RS08335 1807100 .. 1807115 + -10.4  -4.41047   CGGATGAATGAAAAA              GGCTCC CAAG GGAGCC               TTTTCGTTGCCAACT  95 42
JJQ57_RS08465 1831060 .. 1831082 +  -6.8  -3.91911   GCGGTCGAGGACGTA           GGCGCGGCGC AGG GCGTCGCGGG           TTTCCTTCGGGTGCG  66 490
JJQ57_RS08600 1843684 .. 1843712 + -17.5  -2.72263   ACCTCCCCACAGTAG        GGCGAATAACCGC AGA GCGGTTATCCGCC        ATTTCGGCGAGATAT  84 199
JJQ57_RS08610 NONE
        pxpB NONE
JJQ57_RS08620 1847721 .. 1847761 + -15.3  -3.14132   GGTCGACCACCGCAC  GGTGGAAGGCCTCGGCCTG CTC CTGGCGGTGGCGTTCCACC  TTGATCCCGACGAAC  78 248
JJQ57_RS08630 1849097 .. 1849116 +  -9.2  -3.30124   GGACGTCGTCGGCGA            CGTGGCGG ACCA CCGCCAGG             TTGTGCGAGATGAAC  61 372
        mdpA 1860207 .. 1860224 +  -2.6  -4.08216   TCGTCGAAGCCCTTG             TCGCAC CAGCGC GCGCGA              TTTTCCCCGGACTCC  58 310
JJQ57_RS08695 1865817 .. 1865829 +  -3.3  -2.87564   GAGTGATCCGTCTGA                GAGGC CCT GCCTA                TGTCTGAAGAGCTGC  42 39
JJQ57_RS08700 1866405 .. 1866426 + -18.7  -3.05455   AGCGTAAATGACAAC           GGGGGCGCC GCAT GGCGCCCCC            TGTGCTTTCCGTTTT  91 41
JJQ57_RS08705 NONE
JJQ57_RS08710 NONE
JJQ57_RS08715 NONE
        magD NONE
JJQ57_RS08725 NONE
JJQ57_RS08730 1876834 .. 1876864 + -18.4  -2.71731   CGTAGGCGCCTGCGC       TGGCGGATAACGCC TCT GGCGTTATTCGCCG       TCGTTCAGGCATCGG  86 36
        mreB 1882404 .. 1882420 +  -3.6  -3.21276   CATCGTCGCCTAGGA              GCGGAT CATCA AACCGC              TATTCTCCAAAGGCC  44 50
        mreC NONE
        mreD 1883947 .. 1883973 +  -9.5  -2.89421   TCAACGTGAGGTAGG        TCCGCTTCGCAGC TAT GCTGCG--GCGGA        TATCGTCATTCTTCG  58 27
         maf NONE
         rng NONE
JJQ57_RS08785 1889987 .. 1890003 + -11.5  -3.72576   GCTGAGCGGCGCCCG              GTGCCGC GAC GCGGCGC              TTTCGTCCGCAAGGA  76 36
JJQ57_RS08790 NONE
        tldD 1892349 .. 1892369 +  -8.2  -3.76492   GCCGGCGCGGCGAAA            CCTAGCGC AGGCC GCGCTTGG            TTTCGTCCAGTTCGC  69 55
        pmbA 1894345 .. 1894365 +   -14  -4.55128   TTTCCCTCTGTAGAA            CGCCAGCG CTCGT CGCTGGCG            TTTTCGTTTCCGCCT 100 48
JJQ57_RS08810 NONE
JJQ57_RS08815 NONE
JJQ57_RS08820 NONE
JJQ57_RS08825 NONE
JJQ57_RS08830 1898343 .. 1898358 + -11.8  -4.93968   CGCCGGAAAGGAAAA              GCCGCC AGTT GGCGGC               TTTTTCGTTGTCGCT 100 82
JJQ57_RS08885 NONE
        mlaE NONE
        mlaD NONE
JJQ57_RS08900 NONE
JJQ57_RS08905 1908946 .. 1908990 + -23.6  -5.39721   ACGGCGGAACGAGCG GCCCTCCGTCTGCGCGTCCC TTCCT GGGGTTCGCAGGCGGAGGGC TTTTTTGTATGATGG 100 45
JJQ57_RS08910 NONE
        murA NONE
JJQ57_RS08920 1911281 .. 1911295 +  -9.2  -3.24747   CAAATTTTCTCGGGT               GCCCGC ACG GTGGGC               TTGGTAGTCTAGCGG  61 85
        hisD NONE
JJQ57_RS08930 1913736 .. 1913753 + -14.1  -4.18018   CAAGTGATACGAAAA             CGGCGCC CGAG GGCGCCG              TTTTCAATGGCAGGG  93 34
JJQ57_RS08940 1916270 .. 1916286 +  -2.1  -3.34013   TAGGAACCGCGCAGG              GCCAGCG GGT CGGTGCC              TTCCTTGCGCGCCTG  44 481
        cysD NONE
        cysN 1920101 .. 1920118 + -14.1  -4.72986   CGCAGCCATGAAAAA             GCCCCGC GGAT GCGGGGC              TTTTTCATGGGCGTC 100 47
JJQ57_RS08965 1921377 .. 1921410 +  -8.1   -4.5493   CTGCAGGACTGACGT     TGTCGCGCCGG CCCTGCTACCAT CCGGCGCGCCA      TTCTTTTCTTTGCCT  86 29
JJQ57_RS08970 1922831 .. 1922858 +   -17  -4.45664   CCGATTGCCAAGAGA        CGGGGTCGTCGC TAAA GTGACGGCCCCG         TTTTCGTTGCATTGC 100 69
JJQ57_RS08975 1923997 .. 1924017 + -16.9  -5.14563   GGCGGAAACGAGAAA            GGGGTTGCC GAT GGCAACCCC            TTTTTTCATGGACGC 100 46
JJQ57_RS08990 1927529 .. 1927557 + -10.9  -3.20723   GAACCCGCGGCAGCG        CCAGGCTCCTGGA GCC TCAGGGAGCCGGG        TTCGGTTGCTCCCGG  67 94
        rplM NONE
        rpsI 1929683 .. 1929706 + -12.4  -5.76633   ACGCTTGCTGAAAAA          CGCCCACCTC TTCG GAGCTGGGCG           TTTTTTTATGTCTAC 100 45
        petA NONE
JJQ57_RS09015 NONE
JJQ57_RS09020 1932517 .. 1932546 + -20.7  -4.13767   CGCACGTTGGTCTTC       GAAGCGCGCGCCC TACG GGGCGCGCGCGTC        TTTTCACCTCCCACA 100 43
JJQ57_RS09025 NONE
JJQ57_RS09030 1933640 .. 1933657 + -11.3  -5.64006   GCGAGCAATGAAAAA             GGCGATC GAAG GATCGCC              TTTTTTTCGTTCGCT 100 44
        rsmI 1938057 .. 1938082 +  -6.1  -2.52896   TGTTCTTCGCGCCTG         CTC-CCGCTAAC CTT GTCGGCGGAGAG         TCGATTGGACAGTCG  45 44
        rnpB 1938608 .. 1938618 +  -5.4  -4.78149   CACGCTAAATCTCCG                 TCCT GTA AGGA                 TTTTTCACTTCTGAC  78 205
        mraZ NONE
        rsmH 1940136 .. 1940150 +  -6.4  -3.14344   CGTGGCGGAGAAGCT               GAGATG AGC CGTCTC               TTCGTCAAGCGCCTG  53 19
        ftsL 1940424 .. 1940454 +  -4.6  -2.88544   GAGGTCAGGATGGTG       GCGCCATGAAACTG AAT TATTTCCAGGGCGC       TCTCTACCCATGGCG  46 17
        ftsI NONE
JJQ57_RS09085 NONE
JJQ57_RS09090 NONE
JJQ57_RS09095 NONE
JJQ57_RS09100 NONE
        ftsW NONE
        murG NONE
        murC NONE
JJQ57_RS09120 NONE
JJQ57_RS09125 NONE
        ftsA NONE
        ftsZ 1955514 .. 1955541 +  -3.2  -3.61894   ATTGGTGTTCAGCAA        AGGCCGGTTCTG CTAT CATCGCCGGCCA         TTGTTGAAAACAGTT  51 67
JJQ57_RS09140 1956520 .. 1956541 + -15.9  -5.27938   TCCTTTCCATATTTG           GAGGCCACC TCAG GGTGGCCTC            TTTTTATTTCGGGAT 100 49
JJQ57_RS09150 1958020 .. 1958032 +  -3.3  -3.31537   GCGTCTGTTTCCGAG                TGAGC GAT GCGCA                TTGATCTGCTGTACT  46 23
        secA 1960928 .. 1960956 + -18.1  -4.20918   CGCCTGGTTCACCAA        CGCCGCGACCGGT CCT GCCGCTCGCGGCG        TTTGTTCGAATTGGC 100 47
        argJ 1962280 .. 1962312 +    -5  -2.76492   ACCTGAAGCCAGGCA     TTCCGATCCTTCATC GATG GATGAAA-ATCGGGA      ATTTGCCATCGGTCC  44 35
JJQ57_RS09165 NONE
JJQ57_RS09170 1964044 .. 1964059 + -10.4  -5.58454   GGAATGAAGAAAAAA              GGAGGC TTCG GCCTCC               TTTTTTTCGTCTCGA 100 45
JJQ57_RS09195 1969542 .. 1969575 + -20.4  -3.25823   CGTTGTCCGCCCCTG     TCGGCGCAGCGTCGG TTCGT CCG-CGCTGCGCCGA     TTCGTATCCAGGCCC  95 111
JJQ57_RS09200 1970541 .. 1970572 + -17.4  -3.68569   GGTCCGTACGATCCA      CGAAAAAGGCCGGC GAAT GCCGGCCTTTTTCA       TTCTTGCCTCAGTGC 100 41
JJQ57_RS09215 1973856 .. 1973880 +   -10  -3.01791   GGTCCTTGCTCTGCC          GCCCGGCATT TGGAT AATGCCGGCC          TCTTCGAACCCAACT  62 90
JJQ57_RS09220 1974932 .. 1974949 + -14.1   -4.8622   GGCCTGCACGAAAAA             GCCCCGC GATA GCGGGGC              TTTTTCCTTGCCGGG 100 44
JJQ57_RS09230 NONE
        fxsA 1977176 .. 1977194 +  -5.9  -3.07013   CGGTCACCGCAAGGT             CCCTGCC ACAAG GGCAGGC             TGTCTTACGCGGCTC  49 92
JJQ57_RS09240 NONE
        groL 1979319 .. 1979336 + -14.1  -5.84381   CCTGTGGTTGGAAAA             GCCCCGC TTCG GCGGGGC              TTTTTTTATTCCTCA 100 52
        crcB NONE
JJQ57_RS09260 1981013 .. 1981027 +  -4.2  -2.83905   ACGCGGTTTTCGTCG               GCGC CGCCGTT GCGC               TGTCCTCGCTTCTCC  44 41
JJQ57_RS09270 NONE
JJQ57_RS09275 1983879 .. 1983894 +  -2.6  -3.23853   CGCACGGCTGCCGGT              TCGAAGT TTT ACT-CGA              TGTTGCTTGACGAAA  43 0
JJQ57_RS09280 NONE
JJQ57_RS09285 NONE
JJQ57_RS09290 1985631 .. 1985648 + -14.1   -4.7254   CTCCTTGTCGAAGAA             GCCCCGC CTTG GCGGGGC              TTTTTCATGGGCGAT 100 43
JJQ57_RS09330 NONE
JJQ57_RS09335 1998675 .. 1998718 + -10.3  -3.14211   CGGTCTCGGTGACTT CCAGCTCCAGG-CTGCGCGCC GGCA GGCG-GTAGACCTGCAGCAGG TTGCTGACCACCCGT  62 448
JJQ57_RS09360 2003660 .. 2003694 +   -10  -3.87815   ACCCAGGTGCGCAGA    CGC-TCGCGGGCCGCC TGGTC GG-GGCCGGCGATGCG    TTTGTCGACCTGCCC  74 255
JJQ57_RS09370 2005779 .. 2005837 + -12.5  -3.15663   CGCTGTCCCAGCTCC CGCGTCGTCGCATCGCCG-GA-GCGGGCG CAGGC CGCCTGCATCGCGGCGAC-CG-CGTCGCG TTGCTGGAAGTGGAT  69 141
JJQ57_RS09380 2007094 .. 2007130 +  -7.2  -3.22521   TCGCACCGGGCGCTG   GCGGCGACAGTTCGCCG CGCC CGGCGAAAA-TCCCCGC    TTCCATTGCTCTGGA  56 65
        feoA NONE
        feoB NONE
JJQ57_RS09395 2010073 .. 2010101 + -21.8  -3.76224   GACGGGAAAAGCACA        GAGCCCGCCACG GCAAG CGTGGCGGGCTC        TTTCCTGGCTGGCGC 100 40
JJQ57_RS09415 2013541 .. 2013555 +  -7.8  -3.05384   CACATCAACCGGCAG               CGGTCG CGT CGATCG               TTCAATGGGGCCGAC  54 116
JJQ57_RS09420 2014808 .. 2014826 +  -5.2  -3.01712   CGGGAAGATCAGCAG             GTTGCGTC CGC GGTGCAGC             TGTTCGGCCAAGCGC  47 373
JJQ57_RS09435 2017107 .. 2017159 +  -3.2  -2.71924   CCGCGCCGCAGGCGC TTACCCTGCGCAGCATCCGGCGAG GAATG CTCCTCGGCGCCTGCACAGAGTAG ATTTCACCGACCATG  40 45
JJQ57_RS09440 2017948 .. 2017965 +    -4  -3.17212   GGACGACTACCGCAT             GCCCGG CTGAGT CCGCGC              TTCCTGGCGTCATCG  47 16
JJQ57_RS09445 2019123 .. 2019154 +  -7.2  -3.41978   CAGGCGGCGTTCGCC      GGGGAGGCG-CGG CCATGAT CCGTCGCCATCCC      TTGCTCTTCCTGTTC  60 8
JJQ57_RS09450 NONE
JJQ57_RS09455 2020192 .. 2020202 +  -8.2  -3.12351   CCGTTGTCCTTCGCC                 GCGC GCC GCGC                 TTAGCTGTGACCACG  58 94
JJQ57_RS09460 NONE
JJQ57_RS09465 NONE
JJQ57_RS09470 2024354 .. 2024369 +  -5.4  -3.05066   GAATCGACTAGGCCG              CGG-AGC AAT GCTGCCG              TATTCGCAGATTCTT  47 30
JJQ57_RS09475 2025240 .. 2025250 +  -2.4  -3.59979   GAGTTTGCCTGCTCC                 CAGG CGG CCGG                 TTTAAGGTGGCGCCG  49 46
JJQ57_RS09480 2025831 .. 2025865 +    -4  -3.40597   CGGTGCCGGTCGGCG     CCGTGCTGATCTTCAC TTC GCGGTGAGCGGCCCGG     TCTTTCCCTGGCGCA  51 0
JJQ57_RS09485 2027003 .. 2027019 +  -4.4  -3.79747   ATTTCCTCGACCGCC             GG-CGCT AGGC AGCGGCC              TTTCGTAGTCGCTGG  56 18
JJQ57_RS09490 2028383 .. 2028395 + -10.5  -3.28712   CCAAGGTGCCGCGCC                CGGCC TGA GGCCG                TTCTCCCGGAGAACC  66 18
JJQ57_RS09495 2029097 .. 2029107 +  -2.4  -2.79501   AGATCGGCATCTGAA                 CCCG GCA CGCG                 TGTAGTAACCGTCTA  39 27
JJQ57_RS09500 NONE
JJQ57_RS09505 NONE
JJQ57_RS09510 2031560 .. 2031578 + -13.1  -4.56597   TGGCCGTACGAAAAA             GCCCGGC GCGGG GCCGGGC             TTTTTCAGGGACGGA 100 82
JJQ57_RS09520 NONE
JJQ57_RS09525 2035452 .. 2035464 +  -4.7  -2.52795   CCCACGCCTGACGCG                GCGCC GGT GGCGG                TGCCTTGCAGCCATT  43 30
JJQ57_RS09530 2036315 .. 2036363 + -15.4  -2.57211   GGGCCAGCGGAGCGA CGATCCGTAG-GGCGGATAACGCC ACG GGCGTTATCCGCCGCGACGTG-CG CTTATACCAGCAGGT  77 54
JJQ57_RS09550 NONE
JJQ57_RS09555 NONE
JJQ57_RS09560 2041346 .. 2041383 +  -4.7  -3.53012   AGCACTTCCTCGCGC   AGGCT-GGCGACCAGCAC CCG GTGCTGGCGGCCCAGGCG   TTTCACCGCGCCGAG  52 247
        sbcB 2050560 .. 2050578 + -11.7  -3.72324   GGCGGAAATGAAAAA             CGCCAGC ACTGG GCTGGCG             TTCTTCGTGGAACTG  78 70
        purU NONE
JJQ57_RS09615 2052670 .. 2052681 +  -7.2  -2.90496   GCTGAGAAGGAAGAC                CGCC AGCA GGCG                 TCGTTTCGGCAGGCG  50 348
JJQ57_RS09645 2061430 .. 2061445 + -11.8   -4.7254   CCAGGCCATGAAAAA              GGCGCC CGCG GGCGCC               TTTTTCATGGGGGCT 100 44
        rcpC NONE
        rcpA NONE
        tadZ NONE
        tadA 2068839 .. 2068895 +  -9.7  -3.53811   TCGGGCAGAAATTCC GCCAGGCGCTGCTG-TGAACGGCGCGCAA CTG TTG-GTGCTGTTCAGCGGC-GTGC-TGGC TTTCGCCGCGCTGGC  68 9
        tadB NONE
        tadC NONE
        tadD NONE
JJQ57_RS09695 NONE
        tadG 2073654 .. 2073703 + -13.5   -3.1855   AGCGGATTGCTCGGG GACACCTGGCTTTCCGCGACCGAC GCC GGCGG-CGCGGACGGCTGGCTGTC TTCGCTCTTGAGGGC  72 286
JJQ57_RS09715 2075415 .. 2075429 +  -2.1  -3.15366   GTGCCAACCTGTTGC               TGTGA GGTGG TCGCA               TGTTCGAATTTTCCC  43 21
JJQ57_RS09720 2078223 .. 2078242 + -10.7  -5.40072   AGCGCGGCAAAAAAA            CGCCTGC GGACAA GCAGGCG             TTTTTTTCAACCGGC 100 51
JJQ57_RS09735 2082381 .. 2082395 +  -3.4  -3.14132   GACCCCGGCCAGCGT               TGCCCG TAC CCGGCG               TTCGTGGCGCAGGCG  44 226
JJQ57_RS09750 2085216 .. 2085230 +  -6.4  -3.53761   CCGGCCCGCCTGCGC               TCGGCA ACC TGCTGA               TTTCCCGGCAACTTC  57 11
JJQ57_RS09755 NONE
        recC NONE
        recB NONE
        recD 2095960 .. 2095976 +  -4.3  -3.33696   CGGAACTTGTCGCCG              CTGGACG AAC CGATCAG              TTCGTTCAGGCGGCC  49 507
JJQ57_RS09785 2102584 .. 2102598 +  -2.8  -3.16564   ATCACCTCCTTAATC               GAAGAT CTC AGCTTC               TTCATAAGCTCCCAC  44 29
JJQ57_RS09790 2102719 .. 2102729 +  -5.4  -2.81464   ATCTGCCCAGACCCA                 CCAA TTG TTGG                 TGTGCTGCGTGATCC  44 23
JJQ57_RS09795 2102846 .. 2102883 + -10.1  -3.34398   ACAATCGTCGAAAGC   TCAGAAATGAATGTTCG TGAA TGAACATTGATTTCTGG    TCTTTGCACCAGAAC  66 46
JJQ57_RS09800 2105950 .. 2105971 +  -5.9  -3.33162   TGACCATATAACACC           CAAACAATC TGAT GATTGTGTG            TTGTAAGGTGAAGTC  52 34
         rrf 2106214 .. 2106237 + -13.2  -4.67038   GCTCCTATCCCAAAA          CCCCTGGTTA GCGA TGACCAGGGG           TTTTGCTTTTGCGCG 100 39
        pigA 2112552 .. 2112571 + -12.1  -4.67943   CGCCGACGACGATTG            CCCCGGC CTGGTT GCCGGGG             TTTTCTGTCTTGCGC 100 75
        vreA NONE
        vreI NONE
        vreR 2115473 .. 2115488 + -10.4  -3.76224   ACAGGCTGATCTCCA              GTCCGC TGGC GCGGAC               TTTGCTGCGTGCCGG  74 106
JJQ57_RS09860 2117146 .. 2117174 +    -3  -3.63515   ATTTCCACCCAGAGT       AGCG-CGGGGTCG TCGG TGGCCTCGACGCG        TTGTTCGCAGTACAA  53 116
        gspG NONE
        gspK NONE
JJQ57_RS09880 NONE
JJQ57_RS09885 NONE
        gspD NONE
        gspE NONE
        gspF 2126044 .. 2126061 +  -9.1  -3.28912   CCGCCCTACGGGAGG             GGCCTGT GCAA GCAGGCC              TTCCTCTCGCTGTCA  63 165
JJQ57_RS09905 2127623 .. 2127654 + -18.8  -5.01732   CCACGGGCGATAGCG      GAGACCGGCGGTGC GCAA GCACTGCCGGTTTC       TTTTTTCCGGCGCTT 100 52
JJQ57_RS09910 2140365 .. 2140384 +   -15  -5.40072   GCACGATACCCGCCA            GGCCCTCC CCAC GGAGGGCC             TTTTTTTCGGCGAAC 100 56
JJQ57_RS09915 2141417 .. 2141446 +  -3.7  -3.73068   CATCGCTAGTTTGTT       GTCT-TTCATAGAA CTG TTCGATGAACGGAC       TTGTTGCATTAGAAC  56 114
JJQ57_RS09920 NONE
JJQ57_RS09925 NONE
JJQ57_RS09930 NONE
JJQ57_RS09935 NONE
JJQ57_RS09940 NONE
JJQ57_RS09945 NONE
JJQ57_RS09950 2149157 .. 2149177 +  -5.4  -2.95093   CCCGTCGATGGCGAG           GCCTGAGCCG ATG CGGC-C-GGC           ATTTCGTTGCGGTGT  46 20
JJQ57_RS09955 NONE
JJQ57_RS09960 NONE
JJQ57_RS09965 2151547 .. 2151570 +    -3  -3.53012   ACCTTGCGGGCTTGA          CGGCGGTCGCC ATA GCCGACA-CCG          TTTCGCCACGGAACG  49 40
JJQ57_RS09970 2152376 .. 2152391 +  -3.2  -2.62263   TAGTCAGGCTGGTCG              CCGATG CCCA TGTCGG               TGCTGTCCAGGCGGT  39 132
JJQ57_RS10015 2161002 .. 2161012 +  -2.4  -2.60723   CCTGTTCAAGGGCTA                 CCGC GTC GAGG                 GTTGATTCCCGCTCC  38 10
        gloA 2161525 .. 2161536 +  -5.8  -3.13522   GGCGTCGAATGCGGC                GTGG AAGG CCAC                 TATTCCTCGCGCCAT  51 93
JJQ57_RS10035 2163149 .. 2163168 +  -3.4  -4.07568   GCATACCTGAAAAGT            TGGCGGCG TAAT CTCCGCGA             TTTTCAGGCGAGGGC  58 217
JJQ57_RS10040 2163759 .. 2163786 + -15.6  -2.85354   GCCTGAAAACAGAAA        GCCCCTGGCACT GGTT GGTGTCAGGGGC         CTTTGCATTGGGATC  79 119
JJQ57_RS10045 2165216 .. 2165233 + -14.1  -3.65522   CGACACCAAGAAGTA             GGGCCGC TCAC GCGGCCC              TTGTTGGCGTCCATC  81 25
JJQ57_RS10135 2173857 .. 2173873 +  -4.3  -3.37344   CTGCTGCGGTTGGCG              TGCGCTC TCA GGGGGCA              TTGATTGAATGGGCC  48 270
JJQ57_RS10140 2174301 .. 2174312 +  -5.8  -3.80018   ACTAATAGATGGGTA                GGCT TCGC AGCC                 TTGTTACTGTGTAAA  60 46
JJQ57_RS10145 NONE
JJQ57_RS10150 2176327 .. 2176366 +  -9.4    -3.737   CCAGATGTTTGGTAG  TGCTGATGCCACCGCCT CGAACAT AGGTGGTGGTA-CAGCG  TTTCCTACAACCTTG  71 43
JJQ57_RS10285 NONE
JJQ57_RS10290 NONE
JJQ57_RS10295 2199458 .. 2199473 + -11.8  -4.72986   CGGCTCACTCAAGAA              GCCGCC TTCG GGCGGC               TTTTTCGTGCCCGTG 100 48
JJQ57_RS10340 2207150 .. 2207198 +  -5.2  -3.91357   GTCGTCCGGCTGGCG GCGGGGC-CGCAGGAGGCTGC CATGTGGC GCACATTCCTGAGAGTCCCGC TTCTTCTGCTTCTCG  60 96
JJQ57_RS10345 2207630 .. 2207660 + -13.3  -3.60098   AACTGAGGTGCGCAA      GCAAAGACGGCGCC TGCG GGCGCCGTCGT-GC       TTTCCAGTCGAAAGT  77 35
JJQ57_RS10350 2208098 .. 2208112 +  -3.4  -4.08887   CCGGAACCGCACAGG               AGGCGC CAT GCGTCG               TTTGCTTTCCCTGCT  58 141
JJQ57_RS10355 2208284 .. 2208318 +  -9.1  -2.73875   CCGCGACGACGCTCG     CTGGCGCTGAGCCTC AGGTG GCGGCGAAGCGCCGG     TCCTGTTCCAGCACC  57 16
JJQ57_RS10365 2211292 .. 2211321 +   -10  -4.18018   AGTCCGAAGGCTGAC       GACGAAGGCGCCC GAGAG GGGCGCCTG-GTC       TTTTCAGTAGGCCAC  81 27
JJQ57_RS10405 NONE
JJQ57_RS10410 2220417 .. 2220427 +  -8.2  -4.42788   TCCCGAGATTGACAA                 GCGC GGC GCGC                 TTTTCTACGGTTCCG  84 29
         ung 2221237 .. 2221247 +  -8.2  -2.90763   CCAACTCTTCACATG                 GCGG GCG CCGC                 TGTGTGCCCTCTGGC  55 54
JJQ57_RS10445 NONE
JJQ57_RS10450 2229135 .. 2229153 +  -8.8  -2.78384   TAGCTCTGCAGGGTG             GCGACCTG GAC CAGGTCGG             TATAGTCGGCGCGCG  52 193
JJQ57_RS10465 NONE
JJQ57_RS10470 2232019 .. 2232031 +  -6.9  -3.71848   CACCCGGTGCTGGGC                GCGCT GCA GGCGC                TTGTTGGTGCGCACG  61 225
        rpoE NONE
        mucA NONE
JJQ57_RS10490 NONE
        mucC 2236410 .. 2236424 +  -2.8  -4.21607   ATTTCCGGGCCGTCC               GATTCG GCC TGAGTC               TTTCTCTTCCCTCGA  61 14
        mucD 2237903 .. 2237920 + -12.7  -4.72986   CGGCTGGCGAAAAAA             GGGCGGT TTCC ACCGCCC              TTTTTCATGCCCGTC 100 43
        lepA NONE
        lepB 2240747 .. 2240774 + -20.6  -3.75153   CTGAATAATCGCGAA        GCGGGGCTGCTC CCGA GGGCAGCCCCGC         TTTCACTTCCGCGAA 100 78
JJQ57_RS10515 NONE
         rnc NONE
         era 2242845 .. 2242869 +   -15  -2.55351   CCTCTGACCGTTCCC         GGCAGCCCGGC GCCA GCCGGGC-GCC          ATTCCTCTCGCGCCC  74 34
        recO NONE
        pdxJ 2244394 .. 2244411 + -11.3  -4.28656   AAGCCATGAAAAAAA             GCCCATC CGAG GATGGGC              TTTTCCCTATTCGCT  89 82
JJQ57_RS10570 2252079 .. 2252099 +  -3.2   -3.9461   AGCGGGGCGATGCGT           GG-CAGCGG TTCG CCGGTGTCC            TTGTTCTTGGCGCGG  58 454
        putA 2257486 .. 2257516 + -16.1  -3.57561   ACGCCGAGTGATACT      CCGTTCCCGGGCGC CTTG GCGCCCGGGT-CGG       TTTCCGGGGTTCGCC  91 30
        putP 2259349 .. 2259380 + -17.2  -5.00884   AGCGCCCGCGCATGG      AGACGGCCCGCCCC GCAA GGTGCGGGCCGTCG       TTTTTTCCGGCGGCT 100 61
       azoR1 NONE
JJQ57_RS10600 NONE
JJQ57_RS10605 2262935 .. 2262961 +  -4.3  -3.30124   GAACTGCGCACGTGG         CCGCCGGCG CTGAAGGTC TGCAGGCGG         TTGTCGCCGGTGCCG  49 274
JJQ57_RS10615 NONE
JJQ57_RS10620 2267050 .. 2267090 + -13.2   -3.1706   GAACCTATGACGCCC CGTCGTCGCCCGCTGTGCG GTAT CGCGCAG-GGGCCGCGCCG  TTGGTGAAATCCGTT  73 225
JJQ57_RS10625 2268614 .. 2268631 + -12.7  -5.26875   GCCGGAAAGGAAGAA             GGGCCTC GGAC GAGGCCC              TTTTTTCGTTGCGCC 100 51
JJQ57_RS10635 2270766 .. 2270798 +  -5.3  -2.66316   CCTCGTAGTGCTCGG      CCACCAGGTCGCCGA AGA TCAGCGGCACGGCGG      TCATGTACTGCAGGC  44 371
JJQ57_RS10670 2279777 .. 2279796 +  -8.5  -4.30576   TGCCTTCGCTGAACA            GGCCGTC GGCGAG GGCGGCC             TTTTCCTGCTGCAGG  79 125
JJQ57_RS10680 NONE
JJQ57_RS10685 NONE
JJQ57_RS10690 2284469 .. 2284519 +  -4.7  -2.96692   GTGCTGGCGCTGCTG CGCTGAAGGGCGCGCCGCCCATCCG TGCCT CGG--GGGCGGCCCGGTC--CAGCG TCTATGCTGGTGGTC  46 20
JJQ57_RS10695 2284991 .. 2285007 +    -5  -2.52464   CGGCAGCTATGATCC              CTGGGC ATGAG GCCCCG              TCCATTCACCACAGG  43 16
JJQ57_RS10700 2286011 .. 2286029 +   -16  -4.45664   CTGTCCCACAAAAAA             GCCCCGTC GGG GACGGGGC             TTTTCCTTGCATTCG 100 183
JJQ57_RS10710 2287706 .. 2287724 + -13.1  -5.24531   TGGTGTATCCCTTTT             GCCCGGC CGCGT GCCGGGC             TTTTTTATGCCCGGT 100 485
      ampDh3 2288655 .. 2288678 + -16.7  -2.52464   AGCCATTAACCGCGA          GCGGCCGCC CGATGC GGCGGCCGC           TCCCTTGCCCACCCC  79 40
JJQ57_RS10720 NONE
JJQ57_RS10755 2297150 .. 2297179 +  -9.1  -3.05816   GCGGCTGACCATCAC       CAGCTCGCGCTGG AATT CCAGCGCGCCCAG        TTCGATCACCCGTAC  57 106
JJQ57_RS10765 2298564 .. 2298612 +  -5.9  -3.70068   TTTCTTGCGCACCAC GCTGCCCAGCGGCGCCAGCTTGA ACCGC TCCGGC-GGCGG-GCTGGCCGGC TTTGCGCTTGTCGTC  59 137
JJQ57_RS10775 2299203 .. 2299218 +  -6.8  -3.54743   GATAACCGACGGAGG              CGGTGCC CCC GGC-CCG              TTCTCGTTAATGGTC  59 36
JJQ57_RS10780 NONE
JJQ57_RS10785 2300255 .. 2300271 +  -5.1  -4.33956   CTGATTCACCCGAAG              CCAGG CTTTTGC CCTGG              TTTCTGTGTTTTACA  68 114
JJQ57_RS10800 2301961 .. 2301974 +  -2.3  -4.06805   GAGTATGTCTGTGAA               GGCTT GGGT GGGCC                TTTCGTTGTGGTTTT  58 224
JJQ57_RS10870 NONE
JJQ57_RS10875 2312851 .. 2312876 +  -5.3  -4.36914   GGCAATCAGCCAGAG         GGCGAACGTCA TGAT TGATGCGCGCC          TTTTCTCCCAGAAGG  68 8
JJQ57_RS10880 NONE
JJQ57_RS10885 NONE
JJQ57_RS10890 NONE
JJQ57_RS10895 NONE
JJQ57_RS10900 NONE
JJQ57_RS10905 NONE
JJQ57_RS10910 NONE
JJQ57_RS10915 NONE
JJQ57_RS10920 NONE
JJQ57_RS10925 2317659 .. 2317696 +  -3.9  -3.53444   GCACCCTTGAGCGTT   TGCCGGACGGGGAGGGC GCAT GCTGACCCCGTCGGATA    TTTCCAAGCGCCTCG  51 0
JJQ57_RS10930 NONE
JJQ57_RS10935 NONE
JJQ57_RS10940 2320231 .. 2320248 +  -9.8   -5.5074   GTGACGCACTCGAAA             CCCGGC CCTGGC GCCGGG              TTTTTTATTGCGTTG 100 106
JJQ57_RS10945 2321243 .. 2321276 +  -9.7  -4.08216   GGAAAACCCACCCGA    CGAACGAAAGCCCGC CATTGA GCGGGC-TTCG-TCG     TTTTAGAACCCCTGC  76 48
JJQ57_RS10950 NONE
JJQ57_RS10955 NONE
JJQ57_RS10960 NONE
JJQ57_RS10965 NONE
JJQ57_RS10970 NONE
JJQ57_RS10975 NONE
JJQ57_RS10980 NONE
JJQ57_RS10985 NONE
JJQ57_RS10990 2328612 .. 2328631 + -16.4  -2.71011   CCGCGTAACGTAGGA            GGGCCGGC GCTG GCCGGCCC             TCCTTGGAGGACACT  81 33
JJQ57_RS10995 NONE
JJQ57_RS11000 NONE
JJQ57_RS11005 NONE
JJQ57_RS11010 NONE
JJQ57_RS11015 NONE
JJQ57_RS11020 NONE
JJQ57_RS11025 2331873 .. 2331893 + -15.4  -4.56914   TGCCGTAGATCAACC            GGCCCGCC CTGAT GGCGGGCC            TTTTCATTTGGGTGG 100 42
JJQ57_RS11030 2332397 .. 2332432 +  -7.5  -3.58037   CGGCGCGACCACCTG    CTCCTTC-GCCGCGCG GCACG CGCGCCCCTGAAGGGG    TTTAAACAGTTCCTG  62 145
JJQ57_RS11040 NONE
JJQ57_RS11045 NONE
JJQ57_RS11050 NONE
JJQ57_RS11055 NONE
JJQ57_RS11060 NONE
JJQ57_RS11065 NONE
JJQ57_RS11070 NONE
JJQ57_RS11075 NONE
JJQ57_RS11080 NONE
JJQ57_RS11085 NONE
JJQ57_RS11090 2341803 .. 2341819 +  -2.1  -3.65415   GGTTAGGGGCGGCTA              CATGGGC GGG GACCAAG              TTACTTTCTACTTGA  49 494
JJQ57_RS11095 NONE
JJQ57_RS11100 2342486 .. 2342517 +  -6.6    -4.731   CCATTCAGGCACAAA      AAAGGCACTT-GCGA TAA TCGCTAAGTGCCTGA      TTTTGTTAGTGCATT  81 80
JJQ57_RS11115 NONE
JJQ57_RS11120 2345666 .. 2345688 + -11.3   -4.7497   GGCCGTCATGAAGAA          GCCCGCG-CT GGTC AGTCGCGGGC           TTTTTAATGCGTGGA 100 45
JJQ57_RS11130 2347792 .. 2347805 +  -4.5  -3.73775   GGCAGCGGATGGATG               TGCCA TGCT TGGCG                TTTCATAGAAATCCA  56 60
JJQ57_RS11135 2348559 .. 2348577 + -11.7   -3.6682   CTCTAAGATGTCGGC             CGCCCCT CACGC AGGGGCG             TTTCAGTACCTCGAG  75 84
JJQ57_RS11140 2349339 .. 2349356 + -14.1   -4.7254   GGCCTGGACGAAAAA             GCCCGCC ATTC GGCGGGC              TTTTTCATGGGCGCT 100 45
JJQ57_RS11165 2354653 .. 2354668 + -11.8  -3.62096   GCTGGTATAGCGAAA              GGCGCC TTTG GGCGCC               TTTCGCGTCATGCGC  75 95
JJQ57_RS11170 2355278 .. 2355303 + -16.1  -2.75561   CTGGGTTGATCTCCC         CCGCGGGACGC GTTC GCGTCCCGCCG          CTTCCTTTCCTGTCT  81 32
JJQ57_RS11175 NONE
JJQ57_RS11180 2357214 .. 2357233 + -13.6  -4.72986   GCGCCAGCAAGCAGA            TCCCACCC CTCG GGGTGGGA             TTTTTCATGGCCGTG 100 72
JJQ57_RS11185 2358566 .. 2358579 +  -9.5  -3.31144   TCTTGTCGCCCGGCG               CGGCG AGCA CGCCG                TTGTGCCCATGGCGG  61 274
JJQ57_RS11220 2368762 .. 2368793 +  -2.8  -4.56597   GAGGCTCTGTGATCC      CGATGG-CGGGCGCG AAG TGTGCCCGACCGACC      TTTTTCCGGGGCGAC  69 29
        trxB 2369878 .. 2369895 + -14.1  -5.01553   CTGCGTGCAAGGAAG             GCCCCGC TTCG GCGGGGC              TTTTCTTTGTCCGTT 100 61
JJQ57_RS11230 2370654 .. 2370670 +  -9.3  -3.38272   CCAGCGCCGCCACCC              CGGCGCC CTC GGCGACG              TTGTGGGTGCTGGTG  63 164
JJQ57_RS11260 NONE
JJQ57_RS11265 2377402 .. 2377418 + -13.7  -4.42238   GTTGTCGTTTCCATG              GCGCCAG CGG CTGGCGC              TTTTCGTTCCGGTCC 100 120
JJQ57_RS11270 NONE
JJQ57_RS11275 NONE
JJQ57_RS11280 2380837 .. 2380858 + -11.5  -4.97666   TGCAACAGATGTGAG           GCGCCAGGC TGTC GCCTGGCGG            TTTTTCTCGTATATT 100 27
JJQ57_RS11285 NONE
JJQ57_RS11290 2384893 .. 2384909 +  -5.7  -3.53811   CTCGCCCAGCAGCAG              CGCGGCG ATG CCCTGCG              TTTCCAGCGCCTGGC  54 475
        hppD 2387928 .. 2387953 +   -14  -4.42238   GATCTGATCCCGCTG         CCGCCAGCCT GTTCCG GGGCTGGCGG          TTTTCCTTGCGCTCC 100 34
JJQ57_RS11315 2389753 .. 2389763 +  -6.8  -5.37345   GCCGAATTCCTACAG                 TGGC AGC GCCA                 TTTTTTCTCGTTAGA  91 143
JJQ57_RS11320 2390201 .. 2390224 + -14.6   -4.7329   CTTAGCCGAAATGAA          GGAACCCGGC CGCG GCCGGGTTTC           TTTTTGCCTGCTTTT 100 55
        arfB 2390938 .. 2390957 +  -7.8  -3.14344   TCGTGGTGCGCATCA            CCAGGCAG TGGC CTGCCTCG             TTGGTGAAGCCGGTC  54 257
JJQ57_RS11350 2396412 .. 2396447 +   -14  -2.71731   CCGAGTACACAATGA    TCGCGCCG-GATGGGCG AGC TGCCCCTCGTGGCGCGA    TCCTTCGGAGGTCGA  72 173
JJQ57_RS11365 2400436 .. 2400466 + -17.6  -2.57132   TTGTCGGGAGTCGTA       GGGCGGATAACCGC CTG GCGGTTGTCCGCCG       ATTCTCCGGAGCCCC  83 85
JJQ57_RS11375 NONE
JJQ57_RS11380 NONE
JJQ57_RS11385 NONE
JJQ57_RS11390 NONE
JJQ57_RS11395 NONE
JJQ57_RS11400 NONE
JJQ57_RS11405 2408545 .. 2408578 + -17.4  -3.28924   TCCAACCGTCCCGAT     TGACCCGTCCGGCC CCGCCC GGCCGGGCGGGGCA      TTGTGGAGAACGCTG  91 23
JJQ57_RS11410 NONE
        dctM 2410541 .. 2410577 +  -5.5  -3.36327   CGGGGCGCGGGACGC    GCTCCGCCGCCCGGCGC AAG GCTACGATCGGCGCGGC    TTATAGCTACGATCG  52 52
         acs 2412672 .. 2412701 + -22.9  -4.05788   CGCCTGATCCGAAAC       GACCCCGCGCGGT GCGA GCCGCGCGGGGTC        TTTCATTTGGCGCGG 100 45
JJQ57_RS11425 2413988 .. 2414028 + -15.6   -5.4833   CGCTATCCGTCAGAG GTGGCACAAACGTCCGCGA CGCC TCGCGC-TGTTTGTGCCAC  TTTTTTATTGAGTGG 100 41
JJQ57_RS11430 NONE
JJQ57_RS11435 NONE
JJQ57_RS11440 2416602 .. 2416618 +  -3.6  -2.70932   AACCGATCCGTCAGG              GACGCT TGCTC AGCGAC              TGATTAGCCGAGAAC  40 6
JJQ57_RS11445 NONE
        argR 2418428 .. 2418443 +  -3.2  -4.18762   TCGAACGCGGCTGAT              CGCC AACGGCGC GGCG               TTTTCAGTCGGGCTT  61 27
JJQ57_RS11460 2420232 .. 2420258 +  -3.5  -3.10796   CGCGCCGGAGCCGGG         AACCGTGCCGC CGTGC GTGGCGCGGGA         TATTCCCTGCTGGAC  43 100
        aruF NONE
        astA NONE
        astD NONE
        astB NONE
JJQ57_RS11485 NONE
        astE 2426604 .. 2426623 +   -15  -3.75153   CCCTCTCGATCATGA            CGGAGCGC TTCG GCGCTCCG             TTTCCGTTGCGGCCG  88 55
        ltaE 2427782 .. 2427801 +  -8.6  -3.54459   TACAACCTTGCCCAA            GGGCCG-AT ATA ATGCGGCCC            TTTGCCGGCGATTCG  65 84
        alaS 2430500 .. 2430521 +  -7.9  -3.14132   GCGCCAGAGCGACGC           GGGGC-CGGG CGG CCAGCGCCCC           TTGATGCCCGGCCGG  56 56
JJQ57_RS11505 2431863 .. 2431897 + -14.3  -4.62471   GTGAGTGACGCTGGC     AGGCGAAAGGCGCGG CAACC CCGCGCCTTTTGTCG     TTTTTGACCGTTCGG 100 33
        csrA NONE
JJQ57_RS11515 2432417 .. 2432435 +  -4.6  -3.90291   GCGGCGAAAGCCATC             TTGGTAAC TAA GTTACTGA             TTTGATTGAAAAAAT  60 65
JJQ57_RS11520 2432618 .. 2432630 +  -3.3  -3.57144   GACGGACGAAGGATC                GACAG TTG CGGTC                TTTCACGGTAAAACA  51 72
JJQ57_RS11525 2432768 .. 2432789 + -15.9  -5.27335   TGCGCCATACCGAAA           GGGCCTGCA GCAA TGCAGGCCC            TTTTTCTTTGCCCGG 100 34
JJQ57_RS11535 2434393 .. 2434413 + -15.4  -3.84451   GCTTCGCCCGTTCCG            GGCCCGCC TTTTC GGCGGGCC            TTTGCATTTCCGGGA  91 147
JJQ57_RS11540 NONE
JJQ57_RS11545 2435054 .. 2435070 + -11.5  -2.52464   GGCGCGTGGCAACCT              GGCGCGG GTC CTGCGCC              TGCATTGAACGAACG  62 1
JJQ57_RS11550 NONE
JJQ57_RS11555 2436418 .. 2436438 +   -14  -2.71681   CCGGCTTGCCCAGCG            CCCGCTCC ACATC GGAGCGGG            TCATTCCCGCCATTA  69 232
        mgtE 2438567 .. 2438582 + -11.8  -5.14965   AGCGCCATGCAAGAA              GCCGCC CACG GGCGGC               TTTTTTCATGGCGGT 100 45
JJQ57_RS11585 2442990 .. 2443033 + -18.5  -3.86194   AGATCTGATCCGTTC CGCTGCAAAAAAAGCGCGCCC GACT GGGCGCG-TTTTTTTGCA-CG TTTCTCAGCGCCGTT 100 33
JJQ57_RS11605 2448755 .. 2448782 + -19.2  -4.18058   GGCGGAATGCAAAAA        GCCCCGGCGCTA TCGC TAGTGCCGGGGC         TTTTCGAATGTGGTT 100 495
        dinB 2450364 .. 2450393 +  -7.2  -3.05384   TCCGCTGCGAGCAGG      TCCTGTCCCAGCGA GTAG TCGC-GGGGC-GGA       TTGCGTACGCCCAGC  54 324
JJQ57_RS11635 2452340 .. 2452368 +  -3.8  -3.53444   GTACACCCTGAACTC       GACCCTGGACTGG CAGG CCAG-CGAGCGTC        TTTCCACCCAACTGA  51 487
        cysM NONE
        rlmD 2455497 .. 2455511 +  -4.2  -2.87564   TGGATCAGGAGTCCC               TGGTCG CCG CGGTCA               TCTATCGAGGCGTGC  44 363
JJQ57_RS11665 2458308 .. 2458326 +  -6.7   -3.9461   GCCTTTCTTGAAGAA            CG-AGCCG AAGC CGGCTTCG             TTGTTGTTCAGGGCA  65 428
JJQ57_RS11675 2459512 .. 2459523 +    -3  -2.79183   CGATAGCATAATGCC                TTTC CTCA GAAA                 TCTCCTACGGCTGCC  40 140
JJQ57_RS11680 2460923 .. 2460949 + -16.6  -2.71263   ACCTGAGACCAAAGG         TGCGCCCCCG AAGTACG CGGGGGCGCA         TGGTTCAGGCCGATT  81 35
JJQ57_RS11705 2462764 .. 2462781 +  -8.3  -4.25104   CGCGGGCAATAAAAA             ACCGGGC AATG GCCCGGC              TTTTCGTGGGAGAGG  79 43
JJQ57_RS11725 2466654 .. 2466664 +  -2.4  -4.21936   CAGCCTTTACGGTGA                 CTCC TGC GGCG                 TTTTCGGATTGTCCG  59 190
         hda 2467493 .. 2467520 +  -5.5  -3.29461   TATCCGTCTCTCCAT        CCA-TGCGCCGG CAATA CCGGAGCGCTGG        TTGTCCGCAGGCTTA  52 123
JJQ57_RS11750 2470386 .. 2470400 +  -4.2  -3.03338   GAGGAATCCCAGCAA               GCGC AGGGAAA GCGC               TGTTGGCACGCTTCT  45 89
JJQ57_RS11755 2471126 .. 2471152 +  -8.7  -3.09834   TCTCCCCAAGTCGAT        CCTGCCG-ATGC CTGG GCATACGGCCGG         TTGAGTCGTCGCGTC  57 485
JJQ57_RS11765 NONE
JJQ57_RS11770 2472643 .. 2472662 +  -7.2  -3.65812   GCTTGTCGCGCTGTT            TCTCGTCGA TGC TCG-CGAGA            TTCTGTTCGGCGCGA  61 524
JJQ57_RS11785 2475382 .. 2475396 + -12.8  -5.28481   GCCGAGAAGAAAAAA               CCCGGC GAT GCCGGG               TTTTTTCGTTGCCTG 100 51
        gacS NONE
JJQ57_RS11825 NONE
JJQ57_RS11830 2485748 .. 2485762 +  -7.1  -2.90763   AGTAGGGCGAACGCT               CCGTC CGACC GACGG               TCTGTGAACTATCGC  50 36
JJQ57_RS11835 2486231 .. 2486243 +  -4.7  -4.10795   CTGAAGCGGCGCTAC                CCGGC GCC GCCCG                TTTACATTTTTTTGA  65 44
        aadB 2490412 .. 2490435 +   -16   -3.0792   TAACAATTCGTCCAA          GCCGACGCCGC TTC GCGGCG-CGGC          TTAACTCAGGTGTTA  84 38
JJQ57_RS11870 2491127 .. 2491150 + -14.6   -3.9243   TAACAATTCAATCAA          GCCGATGCCGC TTC GCGGCA-CGGC          TTATTTCAGGCGTTA  89 38
      blaOXA 2492005 .. 2492033 +  -8.2  -2.78738   GCTCAAGGCCGTGGC       TGCGCC-ACTGGA CGTC TCCAATCGGCGCA        TGCTTCGCATTTTGC  54 47
JJQ57_RS11880 NONE
JJQ57_RS11885 2493146 .. 2493179 + -18.1  -2.62933   ACCCTTCCATCGAGG     GGGACGTCCAAGGGC TGGC GCCCTTGGCCGCCCC      TCATGTCAAACGTTA  86 40
JJQ57_RS11890 2493633 .. 2493650 +  -4.7  -3.07233   AAGTCGCTGCGGAGG             CCGACGC CATG GTGACGG              TGTTCGGCATTCTGA  47 11
        sul1 NONE
JJQ57_RS11900 2495230 .. 2495244 +  -5.7  -3.15249   GGCCATGCTGAGTGT               GCGAT GGTTG ATCGC               TTCCTCGCCGCTCTC  49 147
        merR 2502718 .. 2502728 +  -3.2  -3.60234   TGGGTCTGGTGTACT                 GAGT GCA GCTC                 TTTGGACGTCTGTGG  51 251
JJQ57_RS11955 2503075 .. 2503088 +  -9.5  -5.42514   GGGTCGAAGAGAAAA               GGGCC TTCG GGCCC                TTTTTTCGTTTCTGC 100 63
JJQ57_RS12025 2514241 .. 2514251 +  -2.4  -3.54902   CGATAGTCACCATCA                 GCCG GCG CGTC                 TTCCTTCTTCGGTCC  49 35
JJQ57_RS12030 2514970 .. 2514999 +  -2.1   -3.5518   GAACTGACCTGAGCC       GGCTAC-TGTTGCA TTT TGTTACCCGTAGCC       TTATCTAGCTCTTCC  49 29
JJQ57_RS12035 NONE
JJQ57_RS12040 2516770 .. 2516797 +  -8.4  -3.72576   CTCGAAGGCATGAAA        C-AGAAGCCCCCG TCA TGGGGGCTTCGCG        TTTCATCGGCGCGGG  69 45
JJQ57_RS12055 2519187 .. 2519220 +  -8.9    -5.252   CCGATCCCGTCTTCA     CCCGCC-ACCGG TTCCCTGGTTT CCGGTCGGCGGG     TTTTTTATGCCCGTC 100 87
JJQ57_RS12060 2519977 .. 2520001 + -10.6  -3.14463   CGCCAGTGCGGCGCG          GCGCGCGGGG AAGGG CCCTGCGCGA          TTCATCCAGCAGGTT  64 97
        queF 2520881 .. 2520899 + -17.4  -4.54727   CGCGGATACGAAAAA             GCCCCGGC CAT GCCGGGGC             TTTTCATTTCGGCAA 100 53
JJQ57_RS12085 2523674 .. 2523707 + -13.1  -3.53012   TGCAGCACCACCGGC     CCCTCGGCAGCG-CCT TCC AGGTCGACGCCGAGGG     TTTCGAACCAGGCCA  77 268
JJQ57_RS12095 2524674 .. 2524691 + -10.5  -3.89412   TGCGACACCTGGAAA             GGCGGCC CTTG GGTCGCC              TTTCGTCGTTTCAGT  76 55
JJQ57_RS12105 NONE
JJQ57_RS12110 2527320 .. 2527377 +  -6.2  -3.79906   GTAGTAGCGATAGAT GCGCGAG-ACCGACTGC-ACGCCGGGATC CTC GGCGCCGGCGTAGTCG-CGGTTCTCGCTC TTCTTGTACCAGTCG  62 435
JJQ57_RS12125 2530293 .. 2530310 +  -6.9  -3.87815   CCGTTCATGGTCTTT             CAGGGCG ACCT CGCGCTG              TTTGTCCAGATACGC  64 41
JJQ57_RS12145 2533164 .. 2533200 + -12.9  -3.36803   AATCTCTTGGTTCTG    CTCGCGGATCTGCGCGC ACA GCGTGCGGATCAGTGCG    TTATCGGTGGGCTTC  75 421
JJQ57_RS12190 2537385 .. 2537421 +  -8.7  -3.29144   TCACCCGGCCATCGT    GGCAGATGGCGTTTC CACCACA GAGCGGCCATCTGCC    TTGTGACCACCATGC  60 207
JJQ57_RS12195 NONE
JJQ57_RS12200 NONE
JJQ57_RS12205 NONE
JJQ57_RS12210 2541310 .. 2541327 +  -9.8   -5.4833   TCCACATCATCGGAA             CCCGGC CATCGC GCCGGG              TTTTTTATTGGCTCG 100 492
JJQ57_RS12215 2541828 .. 2541839 +  -7.2  -4.24204   GGCCCTATACGGGTA                CGCG GACT CGCG                 TTTTCCCTCTAGCTG  72 75
JJQ57_RS12220 NONE
JJQ57_RS12225 NONE
JJQ57_RS12230 NONE
JJQ57_RS12235 NONE
JJQ57_RS12240 NONE
JJQ57_RS12245 NONE
JJQ57_RS12250 NONE
JJQ57_RS12255 2549012 .. 2549027 +  -3.2    -3.737   AGAGCGGCGAGGACG              GCGAAT AGCC ATGCGC               TTTCATGAGCGATTC  54 18
JJQ57_RS12260 NONE
JJQ57_RS12265 NONE
JJQ57_RS12270 NONE
JJQ57_RS12275 2551105 .. 2551122 +  -9.8  -4.13654   ATAACCCAACGCTGA             GCCCGC CCTTGT GCGGGC              TTTGTCGTTTCAGGA  81 43
JJQ57_RS12280 NONE
JJQ57_RS12285 NONE
JJQ57_RS12290 NONE
JJQ57_RS12295 NONE
JJQ57_RS12300 NONE
JJQ57_RS12305 2555651 .. 2555668 +  -9.8  -4.93365   AAGGCACCAACTAAA             CCCCGC CCTAGT GCGGGG              TTTTTCATTCTAGGA 100 27
JJQ57_RS12310 NONE
JJQ57_RS12315 2557356 .. 2557369 +  -2.3  -2.73243   AACTGGCTGAAACGC               GCGCA GCGC TGGGC                ATTTAAGGAGTGAAT  39 6
JJQ57_RS12320 2557778 .. 2557798 + -13.3  -3.53012   GGCTCGCATGATCTG            GTGGCTCGG TGA CTGAGCCAC            TTTCAACCGACAGAG  76 122
JJQ57_RS12325 NONE
JJQ57_RS12330 NONE
JJQ57_RS12335 NONE
JJQ57_RS12340 2562905 .. 2562920 + -11.8  -4.87893   CCATTAGTACCCAAA              GCCCGC GCAT GCGGGC               TTTTTCATTGGAGTT 100 325
JJQ57_RS12350 2563547 .. 2563561 +  -4.9  -2.84634   TGGAGCTGTGGGAGC               GCGCC AAGGC GGTGC               TGTCGTGATCTCCGC  46 3
JJQ57_RS12355 2564383 .. 2564396 +  -3.1  -4.45544   ATCTGTGGATATTGT               TTCTC TATT GAGGA                TTTTAATTCGTACCC  69 474
JJQ57_RS12390 2573285 .. 2573331 +  -4.9  -2.89837   GAACCAACGAGGGCC GGCGGGCCGTGGCAGCTCCTGGC CCT GCC-GGTG-TGCCCCTGCCGACC TAGTTCATTTGAAAT  46 157
JJQ57_RS12395 NONE
JJQ57_RS12400 2575220 .. 2575230 +  -3.2  -2.62396   GGCGCGTCGGGAGGG                 TCTC GAT GAGG                 TGGTATAGCCGCATC  39 114
JJQ57_RS12405 2575660 .. 2575682 +  -2.7  -3.55444   CCGGCGCATCGTGCT          TCAGGCGCGA GCCG TC-CGCTTGG           TTTCCGGGCTCGAAG  49 170
        mcpN 2579685 .. 2579734 +  -5.5  -3.61398   CGATGCGCTTGCCGA TTCGGCCGTAGAGCGTCTGCGCGG TTT CCGC-CAGGCGCTGCGAGGCGGGG TTCTTCACCAGGGGC  54 256
JJQ57_RS12455 2586104 .. 2586118 +  -4.2  -4.11216   TGGACGAGATGGAAG               CTCAGG AAT CCTTAG               TTTTCGCCGTGCCGG  63 449
JJQ57_RS12465 2586840 .. 2586874 +  -6.3  -3.14564   AAATGCATCAATCGG     TGAGGCGGCTGGCAG GGGCG CTGCTGCTCGCCGCA     TTGCTCGGCGGCTGC  53 23
JJQ57_RS12470 2587782 .. 2587821 +  -6.2  -3.28791   AGCTGCCGGCCTGTC  CCGTTGGC-GCACCGCCCC GCT GAGGCGGCCCAGCCGAAGG  TTGTCGGAACCCCGT  52 3
JJQ57_RS12475 2588860 .. 2588877 + -12.7  -3.48276   CGCGGATAGAAAAAA             CGGCACC CCGG GGTGCCG              TTCTGTCGACGCGGA  76 43
JJQ57_RS12485 2590469 .. 2590488 + -11.4  -5.37593   TGGCGGGGCAAGAAA            GGCGATCC GAAA GGGTCGCC             TTTTTTCGTTTGCGC 100 58
JJQ57_RS12490 NONE
JJQ57_RS12495 2591665 .. 2591686 + -15.9  -4.74103   TGTTCTGATGCAGGA           GGGCGATCC GGGA GGATCGCCC            TTTTTACCTTGCGCA 100 33
JJQ57_RS12500 2592619 .. 2592640 +  -5.1  -3.04398   CTAGTGCAATTCGAC           GA-GCGCCCG GAG TGGGTGCGTC           CTTTTGCCGGCCCGC  47 267
JJQ57_RS12510 2593347 .. 2593365 +  -3.7   -3.6581   AGGGCGCGCATGTTG             CCCAGGG CATAC TCCAGGG             TCTTTTCGCCCTGGT  54 420
JJQ57_RS12520 2594451 .. 2594470 +  -4.8  -3.44051   CGCCTGCGCTGGCGC            AACCGCGC GGGG GCGCGGCA             TTGTCCTGGTCGAGG  53 47
JJQ57_RS12525 2595288 .. 2595303 +    -4  -2.94099   AGGCGGCGTTGTACA              T-GAGCG GTA CGCTCCA              TCTCTGATCCCGAAG  44 3
JJQ57_RS12530 2595886 .. 2595929 +  -8.1   -3.1875   TTTGGGGGCCGTTCC GCCGTC-GTCACCTCCGCTCG ACGG CGAGCGAAGG-GACTGCCCGC TTGCGTTGCGGTATC  58 169
JJQ57_RS12545 2598135 .. 2598150 +  -8.2  -2.79183   TTGCCCTTGCCGTCG              CCGGCC TGGT GGTCGG               TCTCATGCCGATGGA  54 142
JJQ57_RS12550 2599301 .. 2599348 + -14.1   -2.8507   GCTGCCGCGTCCTGC GCGGCGCTAGTGGGCGGTGGCC ACGGC GGCC-TCGTCGATCAGCGCCGC TACTTCCTTCGCTCG  74 67
JJQ57_RS12560 2600959 .. 2600975 +  -2.2  -3.53811   GTCATTCTTGCGTCA              CCGC CGGGACAGA GCGG              TTTCGGCAGACTGCG  49 442
JJQ57_RS12570 2601226 .. 2601245 +  -4.8  -3.59979   GGCAGGCGTCGCTGA            GCGCCCGG GCTG CCTAGCGC             TTTCAGCTAGGCCGA  55 26
JJQ57_RS12575 2601918 .. 2601928 +  -6.8  -3.55548   GCGCCTCGTCCTGGC                 GCTG CTG CAGC                 TTTGCGAGGGTCTTG  58 262
JJQ57_RS12590 2604378 .. 2604391 +  -2.3  -5.37043   GTGTGCGGCGATTCG               CGTGA CGGG TCTCG                TTTTTTCTGTGAAGT  84 192
JJQ57_RS12600 2605845 .. 2605857 +  -4.8  -4.24306   CGGCCGGCGAGGCGG                CCTC CGTCT GAGG                ATTTTTTTTCTTCAG  65 15
JJQ57_RS12605 2606429 .. 2606478 + -22.4  -4.20516   CTGGTGCCGGGCTGA CGCCGGCGCAACGAAAAAGCCGCC CGTG GGCGGCTTTTTCAT-GCG-CGGCG TTTATTCGCTGACCG 100 26
JJQ57_RS12620 2607931 .. 2607947 + -10.8  -4.21607   TTGCCTTGCCGAAAA              GCCCGC CGAGC GCGGGC              TTTCTGTTGCCTGCG  84 51
JJQ57_RS12635 2609441 .. 2609479 + -13.1  -3.98224   AACTGCCGCCTCATC  GCCCCCGGGGCCTTTAGT TGCC GCTGT-GGTCCCGGGGGC   TTCTCTTTTGCCTGT  86 102
JJQ57_RS12640 2609813 .. 2609848 +  -6.3  -3.30159   CAGCGTCAGCGAGGC   CGACG-CCCTG--CTCAA GCC TTGAGTTCGGGGTCGTCG   TTGTCCGGAAGTTCG  55 4
JJQ57_RS12650 2611162 .. 2611176 +  -2.1  -2.92111   CCGGGCATGGAAATG              GCGATG GCGG CA-CGC               TGAGTTTTTTCGCCG  40 8
JJQ57_RS12655 2611510 .. 2611521 +  -7.2  -3.71848   CCACTGGCCAGCCTT                GCGC GCCC GCGC                 TTCTTCCTCGGCGAA  61 60
JJQ57_RS12670 NONE
JJQ57_RS12675 2615586 .. 2615603 +  -6.9  -3.32268   GGTTCGGTAAGATTC             CAGAGCG TTGG CGCTCAG              TTCTGAAAATAGTTA  55 245
JJQ57_RS12680 NONE
JJQ57_RS12685 2617735 .. 2617751 +  -5.1  -3.09919   AAATCATAATGAAGT              GCTCCTT CGT AAGCAGC              TGTTAGAGATTTTGT  47 120
JJQ57_RS12690 2619212 .. 2619229 + -12.7  -2.61681   CATCAATGTGACCTA             GGGCAGC TTCG GCTGCCC              ATTATCCGATTAGGA  67 103
JJQ57_RS12695 2620618 .. 2620634 +  -5.9  -3.00525   CAACTTGATATGTAG              TCAGACT TCA AGTTTGA              TATCATTTCGCCGCA  49 33
JJQ57_RS12700 NONE
JJQ57_RS12705 NONE
JJQ57_RS12710 NONE
JJQ57_RS12715 NONE
JJQ57_RS12720 2625784 .. 2625796 +  -4.8  -3.21416   GCGAGCACAGTGTCC                GCCT GGCCG AGGC                TTACTAATGAGCATC  48 6
JJQ57_RS12725 NONE
JJQ57_RS12730 NONE
JJQ57_RS12735 NONE
JJQ57_RS12740 NONE
JJQ57_RS12745 NONE
JJQ57_RS12750 2630473 .. 2630487 +  -2.8  -2.94161   CTCCATCTAATAAAC               TGAATC AAG GAATCA               CTTTATGGCAGTTTC  42 42
JJQ57_RS12755 2631088 .. 2631106 +   -16  -4.64766   CGAAAGGCGGAAAAA             GCCCCGGA ATT TCCGGGGC             TTTTTCACATCTGCA 100 43
JJQ57_RS12760 2632729 .. 2632752 +  -2.2  -3.53224   ATTGGCCAAGATCTC          TGCCTGTCAG TGAG CAGCCCGGCA           TTTCCAGAGGACCTC  47 89
JJQ57_RS12765 2634009 .. 2634025 + -10.8  -2.85585   TCCTAAAAAATAAAA              CCCGCC ATCAA GGCGGG              TCATCTGTTTTGAAG  64 63
JJQ57_RS12775 2635527 .. 2635537 +  -8.2  -3.67597   TGGCCAGGGAGTTGC                 GGGC TTC GCCC                 TTGTTCAGTCCAGCA  65 336
JJQ57_RS12800 NONE
JJQ57_RS12805 2643104 .. 2643123 +  -2.7  -3.06796   CCGACCCGCATTCTG            CGGTCGG CTTAAC TCGCCCG             TTAGATGCACTAAGC  41 14
JJQ57_RS12810 2643565 .. 2643582 +  -4.7  -3.07233   AAGTCGCTGCGGAGG             CCGACGC CATG GTGACGG              TGTTCGGCATTCTGA  47 11
        sul1 2644605 .. 2644628 + -16.8  -3.22841   AACAGACAAGAAAAA          GCCCCAACTG ATAA CAGTTGGGGC           TTCAGTATTGTGATT  86 218
JJQ57_RS12820 2646625 .. 2646640 + -10.4  -4.62002   CCTATACCCTAAAAA              GGCAGC TTTG GCTGCC               TTTTGTATAATTCAT  95 292
JJQ57_RS12825 NONE
JJQ57_RS12830 2648265 .. 2648286 + -10.2  -4.67968   AAGCTAAAAACAACA           GGTCAGAG CCAAGA CTCTGACC            TTTATTATTTATTCC 100 34
JJQ57_RS12840 2651392 .. 2651403 +  -3.6  -4.24326   CGGATCTCCATATCA                GCGG CCAC CTGC                 TTTTCGATAATGTTT  65 209
        sul1 NONE
JJQ57_RS12865 2654142 .. 2654156 +  -5.7  -3.15249   GGCCATGCTGAGTGT               GCGAT GGTTG ATCGC               TTCCTCGCCGCTCTC  49 147
JJQ57_RS12880 NONE
JJQ57_RS12885 NONE
JJQ57_RS12890 2659846 .. 2659891 +  -5.1  -3.00525   GTGTATCACCTGTGC CAGCCGCGCCGAGTCGGGTTG AAAC CATCACGGCTCGTGGCGTCAG TCTGATTTAACGAGG  47 4
JJQ57_RS12895 2661019 .. 2661069 +  -3.9   -3.8211   GGTGGAAAATGCTCC GCAGTTTTCCACCCTACAGGGAC TTGAT GGCTTTGTAGGGTAGACAACGCC TTCTTGTCCATCAGC  56 169
JJQ57_RS12900 2662876 .. 2662895 +    -7  -3.61398   TGATTGGTGACCAAG            CGGCCCTC GTGC GGGGGCAG             TTATTAGGCCCAAAG  59 259
JJQ57_RS12920 2666986 .. 2666997 +  -7.2  -3.31461   GACCACTCTAATCCT                GGCG GCCT CGCC                 TTCTCAGGCTAACTG  58 454
JJQ57_RS12930 NONE
        merP NONE
        merA NONE
        merD NONE
        merE NONE
JJQ57_RS12955 2671806 .. 2671822 +  -2.1   -3.1247   GTAATGGCTGTTGTG              CAGCCAG CTC CTGACAG              TTCAATATCAGAAGT  43 108
JJQ57_RS12960 NONE
JJQ57_RS12965 2674917 .. 2674931 +  -4.9  -3.17075   GGTCGATCCGCGCGA               CGTCC CAGGC GGGCG               TTCCCTTGGCGGACA  47 374
JJQ57_RS12985 2676765 .. 2676775 +  -6.8   -2.6927   TCGCTTACTTTGGTA                 CCCA AGT TGGG                 TGATATGTCAAACAT  49 242
JJQ57_RS12990 2677396 .. 2677413 +  -8.5  -4.21812   AACAACAAAGCTGTG             GACAAGA TCTG TCTTGTC              TTATTTTAAATGCCC  76 45
JJQ57_RS13000 2680269 .. 2680294 +  -8.3  -4.47888   GTGGAATAAATAATA         AAGGTCAGAGT CTTG GCTCTGACCTG          TTGTTTTTAGCTTAA  84 32
JJQ57_RS13030 2685745 .. 2685755 +  -6.8   -2.6927   TCGCTTACTTTGGTA                 CCCA AGT TGGG                 TGATATGTCAAACAT  49 242
JJQ57_RS13035 2686376 .. 2686393 +  -8.5  -4.21812   AACAACAAAGCTGTG             GACAAGA TCTG TCTTGTC              TTATTTTAAATGCCC  76 45
JJQ57_RS13045 2689249 .. 2689274 +  -8.3  -4.47888   GTGGAATAAATAATA         AAGGTCAGAGT CTTG GCTCTGACCTG          TTGTTTTTAGCTTAA  84 32
       intI1 NONE
JJQ57_RS13090 2698573 .. 2698583 +  -2.4  -4.58663   TTCAATCGAGGCAAC                 ACGC GGC GCGC                 TTTTTCCAGGATGAT  68 245
JJQ57_RS13130 2706002 .. 2706032 + -11.1  -2.75712   CGTTTCTGCGCCTTG       CTCGGCGGCTAGC CGGCC GCTAGAGGCCGAG       TCCTTCGCTGGCTGC  63 14
JJQ57_RS13150 2710577 .. 2710591 +  -3.4  -4.08485   TCCCTGGCGTACGGG               GCGCTC AGT GCGTGC               TTTCGTTTCACTGAG  58 253
JJQ57_RS13155 NONE
JJQ57_RS13160 NONE
JJQ57_RS13165 2714642 .. 2714659 +  -4.8   -3.6502   TACTGGCGATTACCA             GCGCCA ACGACA TGGTGC              TTTGAATGCCGGGTA  55 3
        gspG NONE
JJQ57_RS13175 NONE
JJQ57_RS13180 NONE
JJQ57_RS13185 NONE
JJQ57_RS13190 2717773 .. 2717786 +  -3.7  -4.07568   CTGGCGTTGAAGCTT               GCCGC CCTG GCGCC                TTTTCGCCGCGCAGG  61 186
JJQ57_RS13195 NONE
JJQ57_RS13200 2719309 .. 2719365 + -14.5  -2.61681   AGCGAGTTGCCGCCA GGC-GGCCGGGAAACCGAATCCGCTCGG GACG CCT-GCG-ATTCGGCTCCCCGGCCCGCC ATTGTCGCATTCGCG  74 108
JJQ57_RS13205 2719883 .. 2719901 +  -3.9  -3.54755   TTGCAGCCAGGATTC            G-ACGGTT TCGG AACCGTAC             TGTTCTTTCCAGGCT  53 122
        hmpA 2723876 .. 2723900 + -17.1  -4.07568   GACGCCTGAAGCGAC          GGGCCGGCGCG AAA TGCGTCGGCCC          TTTTCGGAAAAAGGA 100 32
JJQ57_RS13230 NONE
JJQ57_RS13235 2725519 .. 2725535 +  -2.2  -3.79906   CGACCAGATCCTTGC              GCTCCA GGTAG TCGAGC              TTCTTCTGCAGGTGG  54 184
JJQ57_RS13255 NONE
JJQ57_RS13260 NONE
        carR NONE
        carS 2730469 .. 2730489 +  -4.7  -2.87229   AACAGTTCTTCACCA            TTTGCCG ACAGTCC CGGCAAG            ATTTCCTCCTGCGCT  46 39
JJQ57_RS13275 2731091 .. 2731101 +  -8.2  -3.15861   CCGATCCGTTGCAGC                 GCGG CCA CCGC                 TTCATCCACCTGCTC  56 262
JJQ57_RS13285 2734644 .. 2734671 + -11.3  -5.45652   CGCTTAAGCTTCCGA        CGGGATTGCCG ATGAAA CGGGAATCCCG         TTTTTTATTGGGCGT 100 82
JJQ57_RS13290 2736465 .. 2736516 +  -6.4  -3.91084   TCCTGTCATTATTCG GCG-GAGTCGGCCGGCAGTCGTGAA CGA TCCACCTCCGCCGGCTGACTAATGC TTTGCTTCCCACTGC  65 104
JJQ57_RS13295 2737622 .. 2737645 + -18.2  -3.51976   CGCGCCCGTGGCAGA          CAAGCCCCGC GAAT GCGGGGCTTG           TTCGTTTCAGGCCTT  95 43
         icd 2770924 .. 2770941 + -12.7  -4.98531   CCCGAACGAGAAAAA             GGCCGGT TCGC ACCGGCC              TTTTTCATTTCCGCA 100 53
        clpS NONE
        clpA 2774156 .. 2774185 + -22.3  -4.13767   TCCGAGCGCGGCAAC       GAAAACGCCCGGC AGAT GCCGGGCGTTTTC        TTTTGCAATCGGCGA 100 41
        ftsK 2779614 .. 2779631 +  -4.7  -2.70932   CTCCCGCGAAGTCAT             CGCGCCG GCGC CGGTTCG              TGATTGAACCCGACA  44 1
        lolA NONE
JJQ57_RS13485 NONE
        serS NONE
        cobA 2784852 .. 2784863 +  -3.6  -3.61398   GTGGCGAAGCCAGCA                CGGT ACAC GCCG                 TTGTTGACCGCAGGA  51 451
JJQ57_RS13535 2788877 .. 2788893 + -15.1   -4.4267   TCCGCGTACTGAAAA              GCCCCGC TGA GCGGGGC              TTTTGCATTTTCGGG 100 43
JJQ57_RS13550 2792235 .. 2792272 +  -7.8  -4.27316   GAGCGTGAATGAGAA  GGGGCT-GCAGTCGGGAT CAAC ATTCCC-CTGCGAGCCCC   TTTTCGCTTCAGAGG  76 72
JJQ57_RS13555 NONE
JJQ57_RS13560 NONE
JJQ57_RS13565 NONE
JJQ57_RS13570 NONE
JJQ57_RS13575 NONE
JJQ57_RS13580 2798882 .. 2798894 +  -4.9  -4.04764   CCGGGCATTAATTGA                TAACT ATA AGTTA                TTTATAGATTGTTTT  63 48
JJQ57_RS13585 2799977 .. 2800016 + -17.8  -2.70932   AGCTGCCCTGTGATG  CGCGGCACCGGCGGCCAGC GTA GCTTGCCGCTGGCG-CGCG  TCCTTCAGGCCAGCC  86 48
JJQ57_RS13600 NONE
JJQ57_RS13605 2805622 .. 2805633 +  -7.2  -3.28712   TTCTACTACCTGCGC                GCGG CCTA CCGC                 TTCTAGAGGGCCAGG  58 8
JJQ57_RS13610 2807231 .. 2807247 +  -7.2  -3.03159   GCGGTAGCCGCCCAT              CTCGCG GGTGA CGCGGG              TGTTGAAAGCCTTGC  51 392
        pqsH 2809774 .. 2809806 +  -5.4   -4.7373   TGCGCTTTACCAGGC     CCGGCGTCGCTG-GG CTCT CCACAGGTTCGCCGG      TTTTTGCTGCGATCC  78 125
        uvrY NONE
        uvrC NONE
        pgsA NONE
JJQ57_RS13640 2813274 .. 2813287 +  -8.1  -5.26875   AGGTCATTGAAAAAA               GGAGC TTCG GCTCC                TTTTTTCATTCCAGC 100 74
JJQ57_RS13645 2815413 .. 2815428 + -11.8  -2.55074   CTCTCAAACCTTGCA              GGGGCC TTGT GGCCCC               TGCATTACGCTTGCA  65 43
JJQ57_RS13660 2818243 .. 2818255 +  -5.5  -4.55697   TTTCAAAATCTGATA                GCGTT CAA GACGC                TTTGTTTATGAAGCT  76 195
JJQ57_RS13670 2819339 .. 2819362 +    -6  -4.30576   CTGTTGCAAATAGTC          GGTGGTGATA AACT TATCATCCCC           TTTTGCTGATGGAGC  71 68
JJQ57_RS13675 2820427 .. 2820460 +  -3.7  -3.28765   CCAAAGCTCAGGTGC     GTCTCGCGC-AAGCCG CCA TGGCCCAGCGCGATAC     TTCAGTTTCCGATCT  48 365
JJQ57_RS13685 2822671 .. 2822690 +  -5.6  -3.82378   AGGGTGTGCGGTGTG            GCGGGCTT CGTG ATGCCTGC             TTGTTATGCGTGGGT  60 493
JJQ57_RS13700 NONE
JJQ57_RS13705 2825128 .. 2825183 +  -6.7  -3.06133   GCTCCCTGCGGTCGC TGGACAGTCCCAGTCGGCGCATG CTTCGCATTT TATGCGCCGCCTGTGCCTGCCCC TTAGCTCCAACGTTA  51 57
JJQ57_RS13710 2826265 .. 2826288 + -14.6  -3.18199   TAACTCTGCGGTCAA          GCGGACCCGCA TTC TGCGGG-CCGC          TTACCTTGGCCGTTA  80 333
JJQ57_RS13720 2826894 .. 2826927 + -18.1  -2.62933   ACCCTTCCATCGAGG     GGGACGTCCAAGGGC TGGC GCCCTTGGCCGCCCC      TCATGTCAAACGTTA  86 40
JJQ57_RS13740 2832085 .. 2832107 +  -9.9  -3.17392   AGGAAAGAGATTTCA           GCGATATGC CAAAC GCATGTCGC           TTCGCTTAAAGGCTG  64 283
JJQ57_RS13745 2832200 .. 2832226 + -18.8  -5.69793   GCCTCCAACAGGAAA         GCCCCGTAGCTC AGT GAGTTACGGGGC         TTTTTTCTTTCCTGT 100 33
JJQ57_RS13755 2834717 .. 2834738 +    -3  -4.36914   GGACGAGGCCTAACG           GTCACGGAT CCGCT ATCCG-GGC           TTTTGTCGGCCACGA  64 104
        kynA 2836299 .. 2836323 +  -3.3  -4.18018   CGGATGCCGCAGGGC          GGGGCCGGCCC ATT GCACCAGCTCC          TTTTCCGTGGCGAAC  63 495
JJQ57_RS13775 2837926 .. 2837946 + -11.1   -4.3739   CGGGGAAAAGAAAAA            GCCCCGC GACGGGG GCGGGGC            TTTTCTACAGCGATC  89 46
JJQ57_RS13785 2840121 .. 2840135 +  -2.7  -3.16267   TTCGTTCGGGTAATT               CCGCC TTGCC GGGGG               TTGGCTATCCTTAGC  43 79
JJQ57_RS13790 2841817 .. 2841844 + -10.6  -3.09933   TCGTCGACTCCGGGA        GGCGCACG-AACA GCG TGTAGCGTGCGCC        TTCGATCGCTTCGAA  62 56
JJQ57_RS13800 2844700 .. 2844723 +  -5.2  -2.52464   GTCTCAGGTTGGGAT          GCCGGT-TTGG TTC CCATTGCCGGC          TCACTTGAAGCGAGA  43 96
JJQ57_RS13805 2844902 .. 2844921 +  -3.5  -4.03167   CGCAATCGCGCGGCA            GTCAACG AGTCGA CGTTGCC             TTCTTTCCCTTCTCG  58 98
        lecA 2845634 .. 2845649 +  -8.2  -5.47218   TGTCTCTGAAAAAAA              GGGCCC GAAT GGGCTC               TTTTTTTAAATACAA 100 46
JJQ57_RS13815 NONE
JJQ57_RS13820 2847180 .. 2847198 +  -3.1  -3.68619   GAGCCGACCGCCGAG             GCGTC GCGGATGAG GACGC             TTTCGGTGAATTCCA  53 436
JJQ57_RS13830 2849061 .. 2849076 +  -6.1  -3.08283   CGAGGCGCTAGGCGT              CAGCG AGGCAG CGCTG               TATTCCCGTCGTTCT  49 30
JJQ57_RS13835 NONE
JJQ57_RS13840 NONE
JJQ57_RS13845 2851683 .. 2851708 +  -6.1  -3.68351   CCGAGTATTCATCGT         CGCCAGTCTCGG CCG CTGA-ACGGGCG         TTTCAGTGATCGGAG  60 7
JJQ57_RS13855 2854125 .. 2854153 + -17.5  -3.09635   GCCCCCCGTTGGAGC        GGCGGATAATCGC GTT GCGGTTGTCCGCC        TTACCTCATGGAAGT  88 90
JJQ57_RS13865 2856525 .. 2856566 +  -4.4  -3.61398   GTCGTACTCGGCGCC GCTGTAGCCGCTTTCGCGCAG CTT CTG-GCGA--GCGGCGTCGGC TTCTTCGCGCAGACG  52 202
JJQ57_RS13875 2857747 .. 2857767 +  -3.1  -4.06864   CACGAAACAGGCAGT            GGTGGTGTG GTT CACTCCGGC            TTGTTCTTGTCTGGA  58 258
JJQ57_RS13890 NONE
JJQ57_RS13895 2861610 .. 2861627 +  -2.6  -2.87211   GATAGGGCGAATGCC             GCGCAG CGTCAT CTGCGG              TATGTCGCGAACGGT  40 36
JJQ57_RS13900 NONE
JJQ57_RS13905 NONE
JJQ57_RS13910 NONE
JJQ57_RS13915 2866715 .. 2866729 +    -7  -3.78934   TTGGCAGGCGCTCAC               GCCGGC TGC GCCGCC               TTGTTCTCGCGCGCG  62 146
JJQ57_RS13925 2869067 .. 2869084 + -14.1   -4.8622   GTGGTATAGGGGAAA             GGCCCGC GGGT GCGGGCC              TTTTTCATTCCGGGG 100 46
JJQ57_RS13950 2873397 .. 2873416 + -12.2  -4.42238   CAGCGACTGCCTGAA            GGCTCATC CGGG GATGAGCC             TTTTCCTTAGGCTGG 100 97
JJQ57_RS13960 2875237 .. 2875255 +  -4.5  -2.80612   TGCGTAGCATCCGCG             CCATGAG ACTGA CTCAAGG             ATTGTTCCGGTTCCC  42 157
JJQ57_RS13965 NONE
JJQ57_RS13970 NONE
JJQ57_RS13975 NONE
JJQ57_RS13980 NONE
JJQ57_RS13985 NONE
JJQ57_RS13990 NONE
JJQ57_RS13995 NONE
JJQ57_RS14000 2886932 .. 2886944 +  -9.1  -3.41051   GCTCAGGCGCAGTTC                CGTCG CGG CGACG                TTCTCCTCCAGGTAG  63 325
JJQ57_RS14010 2888958 .. 2888972 +  -5.6  -3.33696   GTTCCGGATGCCCAC               TGCCGC CAG GCCGCA               TTCATTCGAACAAGA  52 137
JJQ57_RS14015 2890434 .. 2890457 + -17.4  -3.36878   GCCCCGAATGCTTCC          GCTGCCGGCC ACAG GGCCGGCGGC           TTCTCACTGACTAGA  91 109
         tpx 2890959 .. 2891000 +    -8  -3.16564   GACGAGCCGAACTAC GC-GG-CGGCCCTGGCGGCTC TCT GAGCC-CCACGGCCAACCCGC TTCGTCCCATGACCG  56 2
        muxA NONE
        muxB 2899867 .. 2899889 +  -4.7  -3.14132   TTCGACGGGGACGCC           GGGCGATGA GCCTG TCCACGCCC           TTCATCCGCCGCCCG  48 17
        muxC NONE
        opmB NONE
JJQ57_RS14060 2905315 .. 2905328 +  -5.9  -3.31144   CGCAGCCGAACTGGG               CCTGG ATCG CCGGG                TTGTCCACCTGCACC  53 498
JJQ57_RS14075 2909078 .. 2909095 +  -6.3  -3.01712   TCGAGCGTGCCACCG             GCGAGGTC GAG GACCT-GC             TGTTCAAGGCCAGCG  51 364
JJQ57_RS14080 NONE
JJQ57_RS14085 2913440 .. 2913467 + -18.4  -4.86621   AGCGGGCGCGCAAGC        GGGCCGGCAGGG GAAA CCCTGGCGGCCC         TTTTTCGTTGGCCGT 100 41
JJQ57_RS14090 NONE
        benA NONE
        benB NONE
JJQ57_RS14105 NONE
JJQ57_RS14110 2918701 .. 2918728 +  -8.2  -3.14931   CGTAGTAGAGATGCA        CCGGCCGCTCGC AGCC GCGCTCGGCCAG         TTCGTCGAGCATGCC  56 336
JJQ57_RS14130 2922830 .. 2922851 +  -2.1  -3.90856   CCGAGTCCGGCGGCG           ACCAGGCCG ATGG CGGTCTGCA            TTTCGTTGGCCCATT  56 218
JJQ57_RS14140 NONE
        catC NONE
        catA 2926117 .. 2926145 + -16.8  -3.61398   GCGGGAAACGGGGAG       GGCGGC-TGGTCG CTGG CGACCATGCCGCC        TTCTTCCGCCAGGCG  91 42
JJQ57_RS14160 2928207 .. 2928260 +  -7.4  -3.84825   GCCGCCGCCCCATCC GGGGCGGCGCT-CTGCGACAGCCCGTT GCT GGCGG-CTG-CGCGGCGGCGCTGCTAC TTTCCTCTGGGTAGG  68 47
JJQ57_RS14165 2929261 .. 2929277 +  -9.3  -3.01712   GCGCCATGATCCGCG              CGGCGTC GGC GTCGCCG              TATTGCAGGGCGAGG  60 232
JJQ57_RS14175 NONE
JJQ57_RS14180 NONE
JJQ57_RS14200 2935412 .. 2935422 +  -2.4  -2.88249   AGGGTTGCAGGGCGA                 GCGC TGA GCAC                 TGTCTCCGGGCTATG  40 19
JJQ57_RS14205 2936424 .. 2936438 +   -10  -3.18264   CGATTCTTCCAGGGC               CAGCAG CAC CTGCTG               TTCGTAGCTGGCCAG  62 457
        mexS 2944426 .. 2944445 + -12.1  -4.72272   ACCCGCAGCGAAAGA            GCCCGGC CATCGA GCCGGGC             TTTTTCGTGGGCGCG 100 46
JJQ57_RS14250 2947107 .. 2947134 +  -2.6  -4.33819   CTTGCGGGAGCGGGC        TGAGAGCATGGA TGCC TCCTTGGGCTCA         TTTCTTCTCGCTGGT  65 237
JJQ57_RS14260 NONE
JJQ57_RS14265 2949235 .. 2949249 +  -3.5  -2.61144   GGAAAATGATGTAGA               CCTGC GTGCG GTAGG               GTCTTTCGGCGATAG  39 55
JJQ57_RS14270 NONE
JJQ57_RS14275 2950952 .. 2950996 + -19.3  -2.52896   CGCCGATGCCTGGGC CTCGGTCCGGCGGATAGCCGC GGG GCGGCTATTCGCCCTACGGAG TCGGTTGGCGAGTGG  87 132
JJQ57_RS14290 2954958 .. 2954973 +  -2.4  -4.65895   CAGGCGACCCGGGAG              CGCGGC TGAT GCTGAG               TTTTTCCCTGGGGCC  68 17
JJQ57_RS14295 NONE
        dsbG 2956576 .. 2956599 + -10.9  -2.95298   CCGCGTTGATCCTCC          GGGCCGGCG CCGAGC CGCCGGCCA           TCTATACTCCCTGCG  64 32
JJQ57_RS14305 2958244 .. 2958273 +  -3.6  -3.61398   CCCGGCTGCAGGTAG      TCGTCGGCCAACGGC GGC GCCG--GGTCG-CGA      TTCTTGCCCGGCAAC  51 293
JJQ57_RS14335 2963875 .. 2963885 +  -6.8  -3.63627   CATTATCATTCATGT                 GTCG CCC CGAC                 TTTCCCATGTCCGCC  59 97
JJQ57_RS14340 NONE
        foxR 2965457 .. 2965471 +  -5.8  -4.53475   CGGAGCGAAACGCAC               TGAAAA TTA TTTTCA               TTATTTTTGTCGGCT  76 77
        foxA 2968081 .. 2968110 +  -6.3  -2.75064   CGCAACGTACGCGCC       GGGCATTCGCCGGC GTC GCCGGCC-GTACCC       TGGTTACCTGGAGCC  49 95
JJQ57_RS14355 2969268 .. 2969284 +  -7.2  -3.28119   GGCGCGCCACTGGAA              CGGCCG CTAGC CGGCTG              TTAGTCTGGCTGCCT  58 16
JJQ57_RS14360 2969870 .. 2969887 + -14.1  -4.06419   GTCTGCGTCAAAGCA             GCCCCGC CTTG GCGGGGC              TTCTTTCTGCCGGGC  90 47
       tpsB1 NONE
JJQ57_RS14370 2988978 .. 2988990 +  -2.7   -2.5655   AAGTGTTAAATTTCT                TCATT TAG AGTGA                GTTAATATGGATAAG  38 13
JJQ57_RS14375 2989444 .. 2989456 +  -5.5  -3.74224   AGGGCGATTGGTTTA                GCGAG TTA TTCGC                TTTGAGTGGTTTGGC  60 152
JJQ57_RS14380 NONE
        imm2 2990196 .. 2990212 +  -4.4  -3.95584   TAGGTCTTTATTAAT              TAGCCC AGGGC GGGTTA              TTTACTTGGTGCAAA  58 27
        cdiI 2991313 .. 2991325 +  -2.6  -3.14468   GTTTTACTGAACTAT                CCGC TTCAC GTGG                TTCAGTGTGGTAAGA  43 277
JJQ57_RS14400 2992173 .. 2992185 +  -5.5  -3.74224   AGGGCGATTGGTTTA                GCGAG TTA TTCGC                TTTGAGTGGTTTGGC  60 154
        cdiI 2993085 .. 2993110 +  -2.5  -3.71794   GAGGCCTAGGCAGAG         GCGAGTGGTTT TACT GAACTATCCGC          TTTACGTGGTTCAGT  52 243
JJQ57_RS14445 3003332 .. 3003344 +  -3.3  -3.54424   CGGAATCGGAAAAAA                TCGCC CAG GGCCA                TTTGCCAGCGTCGGC  51 149
JJQ57_RS14450 3004358 .. 3004374 +  -5.1  -3.86015   GCTGGGCGGCGCCAG              GCCGT ACAATCG ACGGC              TTTATGGCGAGCGTC  60 55
JJQ57_RS14455 3006244 .. 3006283 +  -3.5  -3.14132   CCACGGCGACAGGCT GGACACCGGCCAGTCGCTG GCCC CGGCGA-TGGTCGC-GCCC  TTGCTCAGCAGGGAG  45 324
JJQ57_RS14465 3008909 .. 3008931 +  -6.9  -3.14931   CCCCGTGGCGACAGG          GCCGGG-GCC GCTT GGCACCCTGC           TTGCTACGGGCTGCC  53 193
        gcvH NONE
        gcvP 3012278 .. 3012311 + -16.7  -3.54424   GCGAGGAGTGACGGA     CGAGGAGGGCGCCGCC AGC GGCGGCGTCCT-CGCG     TTTCCGGCGATACCC  91 30
JJQ57_RS14480 NONE
JJQ57_RS14485 3015095 .. 3015120 +  -3.9  -5.63517   ACATCATCGAATGCT         GAACCG-CGCCG CTG CGCCGGCGCTTC         TTTTTTCTTTCCCGA 100 24
        gcvT 3016692 .. 3016744 + -15.4  -2.76815   GGCGGCGCCTTGCGG TCCAGCGAGCGGGCGAGGGCGGCGC GGGC GCGC-GCCACCGCCTGGTCGCCGGG ATTGTTGCGGCGGGT  75 406
JJQ57_RS14505 NONE
JJQ57_RS14510 NONE
JJQ57_RS14515 NONE
JJQ57_RS14520 NONE
        cadA NONE
JJQ57_RS14530 3026206 .. 3026233 +   -20  -3.15999   GTTGCATTGGGGTAG        GGCGGATAACCG CTTG CGGTTATCCGCC         TTGCGTCTGTCGCGG  95 117
JJQ57_RS14545 3030105 .. 3030118 +  -5.9  -2.55668   AGAACCAGAAGAGGA               GGGCG GACA TGCCC                GTTGATGTCGAGATC  46 7
JJQ57_RS14550 NONE
JJQ57_RS14555 3031772 .. 3031786 +  -2.1  -4.25283   GACTGTTTTCGACGG              CG-AGC GATC GCTACG               TTTTCATCGAACCGT  62 474
        ppk2 3032862 .. 3032896 +  -3.3  -3.31817   TGACGCTGGCGACTC    GACCGCGCGCGTTGCC GCCT GGCT-CGCGCGAGCGC     TTAAATTTCCTCCTT  46 106
JJQ57_RS14570 3034019 .. 3034039 +  -9.7  -3.58726   CGCCAACAGAAGAAC            GGGCAGG CGCAATC CCTGCCC            TTGTGTCTCAGCGAC  68 74
        pvdG 3036022 .. 3036036 +  -3.4  -3.53811   CCGCCAGTTGAGGGG               CGGCCG CGA CGACTG               TTTCCGGAGACTCAC  51 30
        pvdL 3049161 .. 3049197 + -20.3  -3.81089   GGGGGGCGATGAAAA    TGGCCGGAAGGGAATGT TCC ATACTCCCTTCCGGCCA    TTCTTCATATATGTG 100 67
JJQ57_RS14625 3058202 .. 3058218 +  -3.5  -2.75992   AGTCGGCGTAGTAGC              CCGCCGG GTG CCAGAGG              TGATCTTCGATGGCC  41 493
JJQ57_RS14635 NONE
JJQ57_RS14640 NONE
JJQ57_RS14645 3063064 .. 3063074 +  -2.4  -4.48987   CTGGCCGGCTAATTT                 TCCC GCC GGGC                 TTTTCGTTATCCAAC  65 29
JJQ57_RS14650 3063350 .. 3063380 +   -11  -3.36505   CATGGACAAGGCGGC       CGGCTGAGTGGGCG GTA CGCCCGTACGGCTG       TTCTGCCTGCCGTAT  69 19
JJQ57_RS14655 3064175 .. 3064199 + -17.1   -4.8622   TGTCGACGAAAAAAA          GGCCGGTGAGC AGC GCTCCCCGGCC          TTTTTCGTTACGAGG 100 79
JJQ57_RS14700 NONE
JJQ57_RS14705 3098094 .. 3098116 +  -4.8  -3.53012   AAGAAATCCACGGCA           GCCTCGTC TATTCAT GACGAAGC           TTTGGCCGGCCCCGC  53 9
JJQ57_RS14710 3099149 .. 3099174 + -21.9   -4.7254   ATTCGCCATGAAAAA         GCCCCGCCAGG TTCC CCTGGCGGGGC          TTTTTCATGAAGGCT 100 50
JJQ57_RS14725 3104619 .. 3104646 + -22.8  -4.26202   TCGCGGATGCGCAAA        GGCCGGAGCGAC CCGC GTCGCTCCGGCC         TTTCTTCGTCCGTAT 100 51
        pvdP 3110080 .. 3110110 + -14.6  -3.53012   AGAGCGAGTAAGGAT       GGAGGAGGCCCGCG CAA CGCGGGCCTCAGTC       TTTCCGCGCGAGACC  83 49
JJQ57_RS14770 3116421 .. 3116432 +  -5.8  -3.14211   CCTGCGCATGCGAGC                CTGG GAGT CCAG                 TTGATCCAGCGCGGT  51 10
JJQ57_RS14775 3117902 .. 3117951 + -13.6   -4.5464   GGCGCCACGCCGCCA CGCCCTGTGTTGCC-CGTTTCCCC GCCA GGGGATGCCCGGCA-CGCAGGGCG TTTTCGTTGTATGTC 100 43
        pvdQ NONE
JJQ57_RS14785 NONE
JJQ57_RS14790 3121755 .. 3121793 +  -2.9  -2.77895   CCTTCCGGCGGCGGA   CGACTGAAACGGCGGAA TTTCC TTCCGCCGATGCCGACA   ATTATTCCGCCTGCG  40 19
        lldA 3123489 .. 3123514 +  -3.2   -4.0098   GGCGGTAGGCGACAC         TGCGTCGCGA GGAAAA TCGTTGCGCA          TTGTTTCAATTCGCG  58 505
JJQ57_RS14805 3123953 .. 3123981 + -11.9  -3.23274   TTCCCGCCCGGCTTG        GGTATCGTTGAAT TCC ATTCAACGATACG        TTCAGTTCTGCCAGG  70 123
JJQ57_RS14810 NONE
JJQ57_RS14815 3126913 .. 3126961 +   -11  -3.28924   GCCTAGGTCCTTCGT CCTGGT-CGTCGCCTGCGTGAGT TCGC GCGAGCGCAGGCGATGGATCAGG TTCTACGCGGAAGTC  69 35
JJQ57_RS14830 3130482 .. 3130492 +  -8.2  -2.83715   CCGGTAGCCGAGGCT                 GGCC TGC GGCC                 TGTCGTGCTCGTCGA  54 468
JJQ57_RS14890 NONE
        tssK NONE
JJQ57_RS14900 3145578 .. 3145608 + -10.4  -2.66692   CCGATGCGGAGCAGG       CGCCATGAGCGGCG CGA CGCTGTTCATGCTG       GTTCTCCTCCTGGTG  59 18
JJQ57_RS14905 NONE
        tssA NONE
JJQ57_RS14915 3151835 .. 3151845 +  -2.4  -3.53012   CTGTGTCGCTCGCTC                 CCGG TAG CCGC                 TTTCCCGGCCGCGCC  47 171
JJQ57_RS14920 3152216 .. 3152226 +  -6.8  -3.07816   CGGGCAACAGTCGGA                 CAGC AGC GCTG                 TTGCGTGGCTGACAG  51 50
        msuE NONE
        ssuD NONE
JJQ57_RS14935 NONE
JJQ57_RS14940 3156514 .. 3156531 +    -4  -3.54129   CCCAAACCCAGCCGG             GCGCAG TAGACT CGGCGC              TTTGCGGAGCGTCTG  53 132
JJQ57_RS14945 3158129 .. 3158144 +  -3.2  -3.47349   CTTCACTTCCTGCCT              GGCG TAGAAGGC CGCC               TTGTCGGTTTCCCCG  48 421
JJQ57_RS14985 3167578 .. 3167599 +  -4.4  -3.16564   GTCGGGGTAGAGCAG           GGCCAG GTCTTCCTCG CTGGCC            TTGATCAGGTGCGCG  47 407
JJQ57_RS15035 NONE
JJQ57_RS15040 NONE
JJQ57_RS15045 NONE
JJQ57_RS15050 NONE
JJQ57_RS15055 3182259 .. 3182285 +  -9.3  -3.04144   TAGGACGAGGTACCG         GTGCGCTGGCG GATAG CGCCGGGGCGC         TATTCGCCCTACGGG  60 38
JJQ57_RS15060 3184692 .. 3184729 +  -9.7  -3.06796   ACGGCGATCGAGGCG   GCGGC-CACGCTCTCCTC GTC GGGGGCGGCGAGCGCCGC   TTCGATGGCGTCGGC  57 320
        gntR 3192665 .. 3192691 +  -5.1  -2.79796   CAGAATATCCAACTC        GGCG-GCGGCTT GCTC AAGTGGCACGCC         TATCATGCGCTCCAA  45 336
JJQ57_RS15145 NONE
JJQ57_RS15150 3202691 .. 3202727 + -14.9  -3.01924   CCGAACGCCTTCGCT    GCCTCGCCGGTAGCCGC CAT GCAGCGCCCGGCGCGGC    TGTTGCACCGGCATC  78 197
JJQ57_RS15160 3203341 .. 3203367 + -22.3    -4.258   TCGCCGGATGGAAAA         GGCCCGCCCGG GATGA CCGGGCGGGCC         TTTCTTCGTCCATGG 100 45
JJQ57_RS15175 3205351 .. 3205389 +  -5.1  -4.07568   CCGCACCACCATCCA  GGGCGACGCGCCGTTCTG ACGA CGGCGC-GCGCTTCCCCC   TTTTCGCCAGGAGCG  63 7
JJQ57_RS15180 NONE
JJQ57_RS15185 NONE
JJQ57_RS15190 NONE
JJQ57_RS15195 3208934 .. 3208955 +  -2.2  -4.67353   TGTATTAGCTCGTAA           CTCGTCGC CATTTC GTGAAGAG            TTTTTCGCTCGGTGC  68 61
JJQ57_RS15200 NONE
JJQ57_RS15205 3213839 .. 3213865 +  -6.5  -2.70932   GACACCTTCGCGCCT        GGCGCTCG-GAG GTGC CGCATGAGCGCC         TCGTTCAGCGCGCCG  49 4
JJQ57_RS15210 NONE
JJQ57_RS15215 3221270 .. 3221321 + -20.1  -3.24597   GGCGAACCTGGCAAC CTGA-ACCGCCGGCCCCTGCCGCC CGCCT GGCGGCAGGGGCCGGTGCCGTCCG TCTTCATTCGAGGTT  95 22
JJQ57_RS15220 3222034 .. 3222048 +  -2.7  -3.14132   TCGAGGCGTTCGCGG               CGGCC AAGGC GGCGG               TTCGTCGGACAGCCC  43 176
JJQ57_RS15225 3223561 .. 3223587 +   -23  -3.53012   CTGCGCTGAGGGGGC         GGGCCGGTCCGC GCC GCGGGCCGGCCC         TTTGGCCGGCGAGAA 100 32
JJQ57_RS15230 NONE
JJQ57_RS15235 NONE
JJQ57_RS15240 NONE
JJQ57_RS15250 3227825 .. 3227879 +  -8.3  -2.83822   GGCGCAACTGCGGGT GCCGGCATGACCCAGCCGCCGCTGCG CCTG CGCAATGCCGCCAGGGACG-GCTGGC TGATTCTCGAATGGG  55 16
JJQ57_RS15255 3228201 .. 3228239 +  -8.2  -3.25356   ATCTTCCCCGTGACC  GCTCT-GCGC-CTCGGTC GTCCG GAGCGAGAGCGCCAGGGC  TTGGCTTCGTTGTCG  60 114
        oprB 3229843 .. 3229855 +  -9.1  -4.15044   ACCGCGATTCGGTCA                TGGCC AGC GGCCA                TTTCTTCAGCGCCGC  79 57
JJQ57_RS15265 3232432 .. 3232477 + -23.4  -3.09933   GGCTTCGGCCCGGAA GGGGCTTTGCCAAGGGGAGG CGCGTT CCCGCCCTTGGCAAAGCCCC TTCGATACCTTGCGA 100 81
JJQ57_RS15270 3234630 .. 3234642 +  -2.6  -3.63515   AATACCAGTTCTGAA                GTGC CGGGC GCGC                TTGTTCGAGCTACCC  49 27
JJQ57_RS15275 3235015 .. 3235043 + -10.4  -2.52464   AGCCGCGGTGGACTG       GCAACGC-CAGCGC GCA GC-CTGAGCGTTGC       TCGCTTCAGGCCCCG  59 4
JJQ57_RS15310 3241613 .. 3241633 +  -3.9  -3.91911   AACGCTGGTCGACCC            GCGCGGA AAGCTGC TCGGCGC            TTTCCTTGCGCTCCG  58 61
JJQ57_RS15340 3247090 .. 3247104 +  -2.8  -3.48276   GGATGAGCATGGCGG               GTTACT CCG GGTGAC               TTGTGTCGAGGGCCG  49 433
        soxR 3247982 .. 3248027 +  -6.8  -3.34233   GGTTTGCAGCATCGC CCGGATGCGCCGTGCGAT CTGCGGGTCC ATCGCCTGGCGCACTTGG TTCTGCGGGTTGTCG  54 375
JJQ57_RS15370 3252219 .. 3252274 +    -8  -2.52896   ATCACTGCGTAATAA GGTGTCGGGCCGCGCCGGGGGCGGTCG CGG CG-CTGCGTCCGGCACGCCTCGACGAA TGCCTTCGGCAGTGG  49 320
JJQ57_RS15380 3254034 .. 3254075 + -13.7  -2.90075   CGCGATCCGCCGCGG CCGGTCCCGGCGGCGG AATGTCGCCCA CCGCCGCCGCG-CCGG TGTCCTTGCGCAGGC  74 118
        ptxR 3264739 .. 3264749 +  -8.2  -3.28712   CGGGAGGGCGAATAA                 CGCC ACC GGCG                 TTATCCGCCACCGAC  60 62
JJQ57_RS15460 3272677 .. 3272701 + -21.5  -2.62396   CGGCCACGAAAAAAG          CCCCCTTGCCC GAC GGGCAAGGGGG          TAATGTGCGCCGGTG 100 90
JJQ57_RS15485 3278492 .. 3278550 + -14.9  -3.14132   CTCTAAGCATAGACC C-TGTTTATCTGCGTAACGTTACGCTAT TCTG ATTGCGTAACGTTACGCAGATGGAGGCG TTCATGAAAGCCAGC  80 35
JJQ57_RS15490 3279117 .. 3279151 +  -2.7  -3.29471   GGTAGTCCTTGGCGC    TGAAATCCT-CGCCGG TATG CCGGCGCAGGTACTCG     TTGATGTCGTGGGAG  46 295
JJQ57_RS15590 3302291 .. 3302316 + -14.7  -3.03243   ATCTATCGCTCGCGA         GTCACCTGCGC TCCA GCGCAGGCGAC          TATTGCCAAATCGAT  78 283
         vsr 3314690 .. 3314700 +  -2.4  -3.53444   AGTGGTCTACTGATC                 CCGG ACA CCGA                 TTTAGGCGAAAATCC  47 119
JJQ57_RS15620 3316232 .. 3316247 +  -4.8  -3.19668   TATGCCATGCATTCG              CATAAT GTAT ATTATG               TTAAATTAAATGCTA  48 358
JJQ57_RS15630 3318669 .. 3318695 + -14.5  -3.20878   TGTTCCATTGACGAT        GACGGCGC-TGC TGCG GCAAGCGCCGTC         TTGCATTGAATATTC  80 340
JJQ57_RS15635 3319672 .. 3319703 +  -8.6  -3.68351   GTCGATGGTGGCAAC      GGCGGGTGCGCCCGC CAG GCGGCC-CATCAGCC      TTTGCGTCGTCAGGG  65 369
JJQ57_RS15645 3321786 .. 3321797 +    -3  -3.14211   AAGCAAAGAGGCCGG                TGAA CACT TTCA                 TTCCTGGCGGGGCAT  44 101
JJQ57_RS15650 3323376 .. 3323386 +  -8.2  -3.22653   GATGGCAGCGATGAA                 GGCC TGA GGCC                 TGTTCTACGACTCGT  58 19
JJQ57_RS15690 3334633 .. 3334662 + -12.9  -2.74192   GCGCATCTCTAGAGA       GGGGCATGG-GGAC ACG GTTCGCCGTGCCCC       TGCTCTTCGGGCCTC  68 52
JJQ57_RS15695 NONE
JJQ57_RS15700 3337386 .. 3337410 +  -8.5  -4.59773   GACGGAACATCCCTT          CAGGGGCGG GTGGGTG CCGCCCCTC          TTTTTACACCTCGGG  86 41
JJQ57_RS15705 3338778 .. 3338788 +  -8.2  -3.25823   CGAAAACATCGACCA                 CCCG CAC CGGG                 TTGGTGTCCGCCACG  60 335
JJQ57_RS15720 3343077 .. 3343097 +  -4.6  -3.14132   TCCGCCAAGGTAGCG            GATGCCGA GGCCA TCGGCGCC            TTCGTCGACAACGCC  48 408
JJQ57_RS15745 3352312 .. 3352346 + -10.8  -3.61398   ACCAGATCCGGTAGC     CCTGCCAGATTTCG CAGGCGA CCAGATCTGGCAGG     TTGTTGGGCCCCCGG  73 98
JJQ57_RS15750 NONE
JJQ57_RS15755 NONE
JJQ57_RS15760 NONE
JJQ57_RS15765 3356654 .. 3356666 +  -7.7   -2.9155   TGAACCCGCCGCGCT                GAGCT GAC AGCTC                TGTAATCTTCCCCAC  53 24
JJQ57_RS15770 NONE
JJQ57_RS15775 3360206 .. 3360218 +  -5.5  -3.28712   CACCTGCAACACGTC                GGACT TGC GGTCC                TTCTCGCCGAACCAG  51 516
JJQ57_RS15820 3373998 .. 3374028 +   -11  -3.01712   CAACTCCGCCAGCGC       TGCGGCGGCCAGCG GCG CGTTCGCCGCCGGG       TGTTCCGCCCCCAGC  62 371
        cynT NONE
        cynS 3375817 .. 3375827 +  -2.4  -3.30124   ACGGCAAGTACCTGC                 CGAC CAA GCCG                 TTCTGAAGCGTCGCG  45 9
JJQ57_RS15850 3379666 .. 3379704 + -21.6  -2.71712   GACGCCAGAACAAGG   GGGGCGGGCGGACGCCGC GCC GCGTCATCCGCCCGCCCG   GTTTCAGAACGGCCG 100 41
        cmrA NONE
JJQ57_RS15865 NONE
        yidD NONE
JJQ57_RS15875 3385320 .. 3385377 +  -9.1  -3.84406   GGTCAAGCTGGACAA GCGTCC-CTGAGCGAC--G-CGCGCCCGC TCCG GCGGGCGCGTCCAGCCGCACAGCGGGCGA TTCTTCTACTCGCCC  74 16
JJQ57_RS15900 NONE
JJQ57_RS15905 3392733 .. 3392743 +  -6.8  -3.14931   ACCTCTGCATGCAGC                 CCCT TGC AGGG                 TTCATACAAACTCGC  53 65
JJQ57_RS15915 3396043 .. 3396070 +  -4.1  -3.07994   GGCAGGCCTCGGCCT       GCACCGGG-CGTT CGAA GGCGTCCCGG-GC        TTCCATCAGGTTGGC  45 227
JJQ57_RS15935 NONE
JJQ57_RS15940 3399693 .. 3399721 +  -5.9  -4.56358   AAGAACGCATGCTCG        GGAGGGGAGGC AGTTTGA GCCCCTCCTTC        TTTTATATGCATGTG  76 40
JJQ57_RS15955 3401052 .. 3401066 +  -7.1  -2.62396   CCAGCGTCAGCGAGC               CGCTG CTGGC CAGCG               TCGTCTGAGCCCCTC  48 3
JJQ57_RS15960 3402244 .. 3402267 + -18.2  -3.33696   AGCGCGAAAATGAAA          GAAGCCGGCC CTGG GGCCGGCTTC           TTCGTTCAGACGCGG  93 40
JJQ57_RS15970 3404338 .. 3404364 + -20.8  -4.72272   GCCCCATACGAAAAA         CGCCGCGCCCCC ATC GGGGACGCGGCG         TTTTTCATCGGGAAC 100 157
JJQ57_RS15985 3407410 .. 3407425 +  -8.2  -4.26903   CAGGAGGATATCCAG              CGCCGG CACC CTGGCG               TTTTCGTCGGGTACC  79 421
        mexX 3408993 .. 3409050 +  -3.9  -3.06492   CCGCTGGCCGCCTCG CCGGCGGGCCAGTGACGGAGAACGCTA CGAA TGGCTCGTTTCTTCATTGACCGGCCGG TCTTCGCCTGGGTGA  45 11
        mexY NONE
JJQ57_RS16005 3412749 .. 3412764 +  -2.4  -4.07568   GCCGTTTACCTCGAT              GATGCC CACC GGCGCC               TTTTCCCGGGCCACG  58 396
        liuR NONE
        liuA 3415151 .. 3415176 +  -7.5  -3.19192   AGCCTCGCTCTCCCC         GGCCCTTTTCC GCCA GGGAGAGGGCA          TTCCATTGCATCGAC  56 41
        liuB 3416841 .. 3416851 +  -8.2  -3.05343   CCCCATCGAGCCGAC                 CGCC TTC GGCG                 TGTTCCGCATGTGAC  57 1
JJQ57_RS16030 NONE
        liuD NONE
        liuE 3420877 .. 3420922 +  -9.6  -3.13403   CTCCAGCAGCACCGC GTAGGCC-GCCGGGTCGGCCA GCGGA TGGTCGGCACGCCCGGCCAAC TCTTCCTCGCGCAGC  59 339
JJQ57_RS16050 NONE
        fahA 3424173 .. 3424199 +  -2.9  -2.92463   GGCAAAGTGCTCGCG        GC-CCATCCGGG GGCG CGCGGATGAAGC         TCTATACCTACTACC  42 2
        maiA NONE
JJQ57_RS16065 NONE
        hbcR 3427871 .. 3427885 +  -2.7  -3.50393   TCGTCTCGCCGCAGC               CCGCG AAAAC CGCGA               TTCTGTGGCCTGGCA  47 114
JJQ57_RS16075 3429415 .. 3429431 +  -4.3  -2.79312   CGTCATCGGACTGTT              CTACGCC ACC GGCCTGG              TCTGATCCGCCCTTT  42 4
        bdhA 3430316 .. 3430355 + -14.4  -2.62184   TCGCCCGCCCCATTG  CGTA-GGGCGGATAACGCC ACA GGCGTTATCCGCCGATACC  TCGTCTCCCGGCACG  74 101
JJQ57_RS16105 NONE
JJQ57_RS16110 NONE
JJQ57_RS16115 NONE
JJQ57_RS16120 NONE
JJQ57_RS16125 3439142 .. 3439178 +    -5  -2.54371   GTCTCTGAACGCGCT   AGCGCCGGGC-A-CCGCG CGT CGCCGATAGCCCGGCGAA   TCCGTTAGCCTGCTT  43 33
JJQ57_RS16130 3440470 .. 3440497 +  -6.9  -3.31144   CCGGCCCGTCTAGGG        CGTGCACCGTC CCAGGC GGCGGTACGCG         TTCTAGAGCTCGCCG  55 28
        exaA 3453045 .. 3453066 + -14.4  -3.54424   GCCGCTGATCCCTGC           GCCGCGCC CTGCGA GGCGCGGC            TTTCCCCGCCTGCGG  85 33
JJQ57_RS16190 3454124 .. 3454134 +  -8.2  -3.16564   CCAGCAGCACCGTCG                 GCGC CGC GCGC                 TTGGTCACGTAGCCG  56 411
JJQ57_RS16210 NONE
JJQ57_RS16215 3457451 .. 3457478 + -11.3  -3.14132   GGCTGTGATCATCAG       CG-CCGGCAGCGG CGAG CCGC-GCCGGGCG        TTGATCGCGGCGACC  67 168
        brnQ 3468660 .. 3468682 + -11.3  -3.63569   CCCACGGCCCGGCTG          GCGCCTGCCG CCGC CGGCAG-CGC           TTCTTCCCGCGTTCA  73 121
JJQ57_RS16250 3469065 .. 3469081 + -15.1  -3.82084   AACGGCCAAGAGAAA              GCCCCGC GAT GCGGGGC              TTCTTCGTATTCGGG  90 51
JJQ57_RS16265 3470798 .. 3470809 +  -2.2  -3.53091   CCTGCTCCAGCAGTT                CG-CC GGG GGACG                TTTCGAGGCGGAGGT  48 360
JJQ57_RS16525 NONE
JJQ57_RS16530 3509806 .. 3509850 +  -2.1  -3.51858   TGAGGCGGGGCATGG GGGTGATGGGTCAAGACCGC CAATAA GCAGTATT-ACCCACCACCA TTAATTCGTTATTTA  47 128
JJQ57_RS16535 3510966 .. 3510995 + -19.3  -4.45544   ACACCAAAAGGACCA       GGCCGCGCCGG AACCTTCC CCGGCGCGGCC        TTTTCGTTCCTGCCC 100 203
JJQ57_RS16550 3513243 .. 3513254 +  -4.4   -2.5076   TGACTACGGCGACGA                GAGT CATT ACTC                 ATCTTGCTGCTGATT  41 1
JJQ57_RS16555 NONE
JJQ57_RS16560 3514770 .. 3514787 + -14.1  -5.03747   GACGGAACCTTCTTC             GCCCGGC TCCG GCCGGGC              TTTTTTCGAGCGTTT 100 334
JJQ57_RS16565 NONE
JJQ57_RS16570 3516954 .. 3516965 +  -2.2  -2.52933   ATCGCAAAGTTCTTC                GCTA TCTA TGGC                 CTTAATCGGTTCAAG  37 281
JJQ57_RS16575 NONE
JJQ57_RS16580 3517729 .. 3517747 +  -7.3  -5.08169   ACCCTACCCCTCATT             AGCCCGG CAAGT CCGGGCA             TTTTTTCGCCTGTAT  93 156
JJQ57_RS16585 NONE
JJQ57_RS16590 3518900 .. 3518920 +  -3.1  -3.99374   TTCAGCCGGGCCTTG            GAGCGGTTC TTC GAGCCGAGC            TTCTTCTTGCTAAGC  58 523
JJQ57_RS16600 3520248 .. 3520275 + -11.3  -5.06414   CATCGACCTGACCAA        GGCCGCCAAGA CAACGT TCTTCGCGGCC         TTTTTCTTGGGCAGC 100 48
JJQ57_RS16605 NONE
JJQ57_RS16610 3521608 .. 3521622 +  -8.5  -3.69621   GTGACGCTGCCGAGT               GGCGC CGTAA GCGCC               TTTCCCCTTCTACCT  69 136
JJQ57_RS16615 NONE
JJQ57_RS16620 NONE
JJQ57_RS16625 NONE
         ssb 3524115 .. 3524130 + -10.4  -5.07652   TTACGCGAAATTAAA              GGCCCT ATTG AGGGCC               TTTTCTTTTGCCCGG 100 50
JJQ57_RS16635 3524843 .. 3524855 +  -5.5  -3.45945   CCTACGGACTGCACA                TGCTC TAT GAGCG                TTCGTTATGGCTCGC  55 115
JJQ57_RS16640 NONE
JJQ57_RS16645 3526389 .. 3526409 +  -3.8  -2.87132   AAAGGAGGCGAAGGC            GCGGGCCG AGGAA CTGCGCGC            TCTGTGCGCCGCCGC  44 135
JJQ57_RS16650 NONE
JJQ57_RS16655 3527653 .. 3527668 +  -4.6  -3.62096   GGTTACGACCTTGAG              CGTCGC TGGT GCCACG               TTTGCGATGGTCGCG  55 514
JJQ57_RS16665 NONE
JJQ57_RS16670 NONE
JJQ57_RS16675 NONE
JJQ57_RS16680 3529721 .. 3529754 +  -4.3  -3.12803   TTCAAATCCTACCAT     CATGCCCTCCCCGGC AATA GCTGGGGCGGAGAGG      TATTGCCTATGAGTA  47 58
JJQ57_RS16685 NONE
JJQ57_RS16690 3532799 .. 3532816 + -14.1   -4.8622   TCGCGCAACGCAAAA             GCCCCGC ATCC GCGGGGC              TTTTTCATTCCGGCA 100 48
JJQ57_RS16705 3535143 .. 3535168 +  -7.6  -3.41051   GGACCTCCGGGGTAC        GC-CAGTCGCCG CGTG CGGCG-CTGCGC         TTGTCCTGCCAGTAG  59 242
JJQ57_RS16720 NONE
JJQ57_RS16725 3537963 .. 3537993 +  -8.3  -3.02511   CCAGGCGCGTCCCCA      GCAGGCTTCGCC CCCTGGTT GGCGG-GCCTGC       TGTTGCACGGATGCA  57 148
JJQ57_RS16730 NONE
JJQ57_RS16735 NONE
JJQ57_RS16740 3540291 .. 3540314 + -18.2  -4.18018   CTGATCCTGGCCCAG          GGGTTCCGGC GCCA GCCGGAACCC           TTTTCCATCCGACAC 100 37
JJQ57_RS16745 NONE
JJQ57_RS16750 NONE
JJQ57_RS16755 3543497 .. 3543533 + -18.2  -3.53091   ACCAGCAGGGCGCCC   TGGGCGCC-G-AGGGTGA CGA TCACCCTGCCGGCGCCCA   TTTCGCGCAGGCGCT  90 409
JJQ57_RS16795 3553242 .. 3553269 +   -17   -3.3514   ACCCGGAATGATCCG        CATCGCCCCGCC CTGC GGCGGGGAGATG         TTCTCGCCTATCAAT  91 30
JJQ57_RS16800 NONE
JJQ57_RS16805 3557275 .. 3557285 +  -8.2  -3.18582   ACGAGTCGTAGAACA                 GGCC TCA GGCC                 TTCATCGCTGCCATC  58 247
JJQ57_RS16815 NONE
JJQ57_RS16820 NONE
JJQ57_RS16825 3563572 .. 3563583 +  -7.2  -4.11484   TGCGTTGACTTCTTT                GCGG ACGG CCGC                 TTTTGGCCGATTAGC  72 395
JJQ57_RS16855 NONE
JJQ57_RS16860 3571367 .. 3571388 + -15.1  -2.52464   GGTTGACCCAGAGCC           GCTCGGCGG GTAT CCGCCGGGC            TGCCTTGCGCAGCAA  71 206
JJQ57_RS16895 3583718 .. 3583730 +  -6.3  -4.59773   GCTCGCCAGAATCCA                CAACA TCT TGTTG                TTTTTCAAAATCAAA  78 129
JJQ57_RS16900 3585790 .. 3585810 +  -3.1  -3.56704   CTGTTGCGGCGGCTG            CGGCGGTTG AGT CGCCTGTCG            TTCCTTTCATCCACC  51 16
JJQ57_RS16905 NONE
JJQ57_RS16910 3586759 .. 3586779 +  -3.8  -3.16742   GCGTCCAATTGTCGC            GGACGGCG CCGCT CGCCACCC            TTGCTCCAGATTCAG  47 100
JJQ57_RS16915 NONE
JJQ57_RS16920 NONE
JJQ57_RS16925 3589884 .. 3589903 +    -2  -3.73775   CCCGGGGCGATTACA            CTGAAGGC CCAT GCCTGGAG             TTTCCTGGACATGCC  52 59
JJQ57_RS16930 3591637 .. 3591649 + -10.5  -3.32844   CCCGCCGCTGGAGCG                GCGCG GCC CGCGC                TTCTAGGCTCGAACG  66 201
JJQ57_RS16935 3593251 .. 3593303 +  -6.9  -2.51871   AGGGCTGCAATAACA CC-TGAGGCCGCTCCGC-GGGGGCGC TACG GCGCCCCCTGC-GAACAGCGACATGG CCTTTTGATATCACA  48 21
JJQ57_RS16940 3594051 .. 3594068 +  -3.3  -3.31263   CGCCTGAGGCGCTGC             G-CCGCCG ATC CGGGGGAC             TTGTAGGCATGCCCT  46 34
JJQ57_RS16945 NONE
JJQ57_RS16950 NONE
JJQ57_RS16955 NONE
JJQ57_RS16960 NONE
JJQ57_RS16965 NONE
JJQ57_RS16970 NONE
JJQ57_RS16975 NONE
JJQ57_RS16980 3603010 .. 3603025 +    -9  -2.57931   CGAGCCCGCGCAGGG              CGCATG ACCG CATGCG               GTTATCCACCGTGAA  56 19
JJQ57_RS17025 NONE
JJQ57_RS17030 NONE
JJQ57_RS17035 NONE
JJQ57_RS17040 3615249 .. 3615261 +  -3.3  -3.03124   TCGCCATGCGGACCG                GAACC GGC GGGTC                TATTGACCCGTCGGC  43 7
JJQ57_RS17045 NONE
JJQ57_RS17050 NONE
JJQ57_RS17055 3618857 .. 3618887 +  -9.6  -2.78715   ACCGGCGCCCCCGCT       CGAGCCGTTCCC CGTCGGC GGGATCGGCCCG       TATACTCGGAGCCTT  57 40
JJQ57_RS17060 3619955 .. 3619965 +  -8.2  -3.41693   GGGTAGCTTCATCAT                 CCCC TCG GGGG                 TTGGTTGGTGATGCG  60 426
JJQ57_RS17070 NONE
JJQ57_RS17075 3623319 .. 3623355 +  -6.4  -4.25056   TGAAGACCATCTCCT   CGCCACCGTCGGCGCGG CGCA CCAGGCCGGC-GTAGCG    TTTCTTGCTGCCCTC  70 502
JJQ57_RS17090 3626914 .. 3626938 +  -3.5  -3.53012   ACGATCAGCCCCACC         GCCAGCAGCC GCAACG GGCT-CGGGC          TTTCGCCGAAGAGCA  51 491
JJQ57_RS17105 NONE
JJQ57_RS17110 3630255 .. 3630269 +  -3.4  -3.64703   ACCATACGGGTCCCC               CCGGTG TCG CGCCGA               TTTGCCTCCGCCCGG  51 109
JJQ57_RS17115 3630925 .. 3630946 +  -2.9  -3.55444   GACCTTCAGCACCGC           CGCGCCT AGGCTTGC AGGCTCG            TTTCACCGGTAGCGG  51 67
JJQ57_RS17120 3631957 .. 3631971 +    -7  -3.37245   CCGGGAACGAGGAAG               GCCACG TCG CGCGGC               TTGATCTTCGCCTCC  56 432
JJQ57_RS17145 3641760 .. 3641791 +  -7.2  -3.07307   ACGCCGGCGGACAGT      GGTTAGGTTGACCG ACCA CCGTCAGCCGGACC       TTCCATGAGCCTTTC  54 50
JJQ57_RS17150 3642617 .. 3642644 +   -14   -3.0264   GCGGTCAGCCTGGCG        CCGGGCGCGGCG GCAG CGACGCGCCAGG         TGTTCAGCGCCGTTT  75 55
JJQ57_RS17195 3653409 .. 3653419 +  -2.4  -3.06696   GCGCCAGATCAATTT                 CCGC GTA GCGC                 TATATTCCAAAAGCC  41 48
        modA NONE
        modB NONE
        modC 3656115 .. 3656125 +  -2.4  -3.35679   CCATCCGCCGCAGGA                 AGGC GAA GCCG                 TTGTAGATCGGCAGC  46 97
JJQ57_RS17220 NONE
JJQ57_RS17225 3658986 .. 3659002 +  -3.6  -3.47349   AGCGGACGATTTCCT              CGTCCA GCGGA TGGCCG              TTGTAGCTTTGCCGG  49 316
JJQ57_RS17235 3661335 .. 3661350 +  -4.6  -3.77219   TTGTGCGCCCTGCCC              CGGAAG TCCC CCTCCG               TTTCAATTCAATAAT  58 109
        ccoN NONE
JJQ57_RS17245 3663315 .. 3663332 + -14.1  -4.50159   ACGAAAGTGCCTTGC             GGGGCCG GCAA CGGCCCC              TTTCTTTCGCTTCGA 100 76
JJQ57_RS17250 3664524 .. 3664535 +  -5.8  -2.78384   CGTAGTCCCAGCGCT                GCGA CCAG TCGC                 TGTCCTCGCGGACCA  46 36
JJQ57_RS17260 3665944 .. 3665959 + -11.8  -5.40004   CTCCATACGACGAAA              GGCGCC CACG GGCGCC               TTTTTTCGTTTCCTC 100 45
JJQ57_RS17270 NONE
JJQ57_RS17275 NONE
JJQ57_RS17280 3669890 .. 3669907 + -12.7    -3.281   GCCGGCAACGAAAAA             GGCGACC TTGC GGTCGCC              TCTTCTGCCTTACGG  74 44
JJQ57_RS17295 3673809 .. 3673823 +    -7  -3.28924   GCAAAGAAATGATCC               GGGCCG GAG CGCCCC               TTATCGACACGCATA  55 29
        tse1 3674450 .. 3674460 +  -2.4  -4.07568   TGCTGCGACAAAACG                 GCGC CAG GGGC                 TTTTCCGGCCCGCGG  57 164
        metH NONE
JJQ57_RS17310 3678952 .. 3678986 + -10.6  -2.74012   ACGACAGGCGGCTTT     CGCCGATCTGTTCGGC GAT GCCCGGCAGGTCGGCC     TCCTTGCGCTCGTCG  60 310
JJQ57_RS17325 NONE
JJQ57_RS17330 3681025 .. 3681053 +    -8  -4.34771   GGATCAGGACGAAGG        CCGCGCGGGCGT CGACC ACGCTGTCGCGG        TTTTCCTGGGTTTTG  76 109
JJQ57_RS17335 NONE
JJQ57_RS17340 3683511 .. 3683528 + -14.1   -4.8622   CGCCCTGACGGAAAA             GCCCCGC AGCC GCGGGGC              TTTTTCGTTCCCGAG 100 45
JJQ57_RS17350 3684687 .. 3684720 +  -3.5  -3.53811   TCACCATGTACGTCA     GCCAGGCCTGACCGC CAGG GCGCCCCGGCCGTGC      TTTCGGCCGGCTGGA  51 15
JJQ57_RS17355 3685749 .. 3685759 +  -6.8   -3.3344   CGATCTCGCGCGCCA                 CCTC TTC GAGG                 TTGTCGAGCTTCCAT  54 107
JJQ57_RS17370 NONE
JJQ57_RS17375 3689079 .. 3689100 +  -9.4  -5.52384   ATGCCAGAAGGAAAA           CCGGAGTC CCTCGC GGCTCCGG            TTTTTTTCGTCCGGC 100 55
JJQ57_RS17380 NONE
JJQ57_RS17385 3691189 .. 3691208 + -13.6  -4.55128   CGGCGAACGCGCGAA            GAGGGAGC CAGG GCTCCCTC             TTTTCATTTCAGGAT 100 46
JJQ57_RS17395 3693183 .. 3693193 +  -8.2  -2.70932   GCTCGGCAAGCAGCC                 CGGC GAC GCCG                 TAGTTCACCGCGAAC  52 81
JJQ57_RS17405 3695076 .. 3695119 +  -5.9  -2.59564   TGCATCACCCGCTCG TGGTCCTGCGCCTGCATGCG TGTGC CGCA-GTTGCCGCAGAACCG GTTGTGACGTGCCCA  46 453
        nhaB 3700058 .. 3700086 +  -5.7  -3.96068   TCACCAGCAGCCCCG        AGGCCAGCAGGCC GTG GGCCGGCGCGCCG        TTCTTGTTGAGCTGG  63 365
JJQ57_RS17440 3704355 .. 3704388 +  -8.1  -3.71848   GTACTCGGTCACGTC     CGAG-CGGTCCTGCTG GCC CAGCAGGGCGAACTCG     TTGTTGATGAAGCCG  63 461
        gloB 3706856 .. 3706873 +  -5.5  -3.89524   AGGTTGGCGAAATCT             TGACCAC TCTT GAGGTCA              TTTCTAGAATCGGCT  62 41
JJQ57_RS17465 3708548 .. 3708575 + -18.4  -4.07568   CAGGTCGTCCCGAAA        CGCCACGCCCGC TCCT GCCGGCGTGGCG         TTTTCGCAAGCGCGG 100 51
JJQ57_RS17470 NONE
JJQ57_RS17475 NONE
JJQ57_RS17480 NONE
JJQ57_RS17485 NONE
JJQ57_RS17490 NONE
JJQ57_RS17495 3716951 .. 3716967 + -13.7  -4.72272   CCGCCCATGAAAAAT              GGCCGCT TCG AGCGGCC              TTTTTCATGGGCGGA 100 46
        parR NONE
        parS 3727789 .. 3727824 +  -8.3  -3.54424   CCAGGCCCGCCCTAG    CATGGGACACCTAGC CTTTCC GCCAGGTATTCCATG     TTTCGCGCCATGCAC  65 97
JJQ57_RS17545 3729957 .. 3729969 +  -4.7  -3.79747   CATTGGCAACGGATC                ACGCC GCT GGCGA                TTTCGTCGTCGATGG  58 328
        folD 3731981 .. 3732010 + -20.9  -3.92075   TGAGGTCGCCGGTAA       TGAAAAGCCCCGC GTTC GCGGGGCTTTTCA        TTTATCGCTGCGGGT 100 38
JJQ57_RS17590 NONE
        lpxH 3736445 .. 3736461 + -15.1  -3.54638   CTCTGACCCACCCCA              GGCCCGC CAT GCGGGCC              TTTCAGAAACATTAT  86 35
JJQ57_RS17600 3737915 .. 3737930 + -11.8  -4.56978   CAGGCAGCAAAAAAA              GCGCCC CGCG GGGCGC               TTTCTTGTTTCCGGC 100 43
JJQ57_RS17610 3739623 .. 3739638 + -11.8  -4.65895   TGGTCGGACGAAAAA              GCCGCC CAAG GGCGGC               TTTTTCGCTGGAAAC 100 45
        acnB 3743138 .. 3743156 + -13.1  -5.06414   CGACGCGTCGAACAA             GCCCCGC CCCGT GCGGGGC             TTTTTCTTGCCCGGC 100 46
JJQ57_RS17625 NONE
JJQ57_RS17630 3745144 .. 3745166 +  -4.6  -2.82516   CAGCCACCCTGCTGG           CCCCCGGCGC AGA GCGGCGCGGC           TATGCTCGTGCGCCC  44 71
JJQ57_RS17635 3746205 .. 3746261 + -21.1  -3.53224   GCGGTTACCCATCCC CGACAAAGACGTCGCGCGGCCTCT-CC TTCCC GGCAGAGGCC-CGTGGCGTCTTCGTCG TTTCGCCCCAGCGTC 100 207
JJQ57_RS17640 NONE
JJQ57_RS17645 3749459 .. 3749486 + -19.2  -5.63517   CGGGACCTGGACAAA        GGCGTCCTGCTG GCAA CAGCGGGACGCC         TTTTTTGTTTGCGCC 100 226
JJQ57_RS17650 NONE
        nirD 3752340 .. 3752352 + -10.5   -2.6927   CGGCCTGGACAGCGT                GGCGC TGT GCGCC                TGATCTCTCGCCGAT  60 10
JJQ57_RS17660 NONE
        cobA 3755887 .. 3755902 + -11.8   -4.8622   CCAGGCAAAGAAAAA              CCCGGC CTGA GCCGGG               TTTTTCCTTAGAGGC 100 55
JJQ57_RS17710 3765287 .. 3765329 +  -5.3  -4.18018   GCGCCTGGCGGGGCG CCCGGCATGCCCGGCCTGC CGAGC GCAGGTCGATGACGCAGGG TTTTCCGTCACGGAC  65 207
JJQ57_RS17715 NONE
JJQ57_RS17720 NONE
JJQ57_RS17725 3768475 .. 3768492 + -14.1  -4.84527   TTCCGGTATGAAGAA             GCCCGGC TCCG GCCGGGC              TTTTTCATGTCTCGG 100 46
        pabB 3780867 .. 3780887 + -18.3  -3.72576   CCCCGGAATAGAAAA            GAGCCCGCG TTC CGCGGGCTC            TTTCATCGGCGGCGC 100 30
JJQ57_RS17775 NONE
JJQ57_RS17780 3782890 .. 3782908 + -13.1  -4.72272   GCCAGCCATGAAAAA             GCCCGGC ACCAG GCCGGGC             TTTTTCATGGGCCGA 100 43
JJQ57_RS17805 3787432 .. 3787451 + -16.4   -4.4078   AGGTGGAAACGAAAA            CGCCGGGC TGAT GCCCGGCG             TTTTCATTGCGCGCC 100 44
JJQ57_RS17815 3788846 .. 3788863 + -12.7  -5.40072   CCCGCTCCAGCGAAA             GCCCGGT TGAT ACCGGGC              TTTTTTTGCGCCCAA 100 43
JJQ57_RS17820 3789214 .. 3789231 + -14.1   -4.4078   CCGCAACCCTGAAAA             GCCCGGC TCAC GCCGGGC              TTTTCGTTCAGGCCA 100 72
JJQ57_RS17830 NONE
JJQ57_RS17835 3790819 .. 3790835 +  -7.2  -3.90744   TTGAACAGTCGACGC              GCCGGT TGAAC GCCGGC              TTCTTTCCCGGGAAA  68 17
JJQ57_RS17840 3791464 .. 3791484 +  -5.3  -3.36289   CAGGTCCGGCAGCGC            CGGGCTCAT CCA GTCGGCCCG            TTCGTTCAACTGGTA  53 395
JJQ57_RS17850 3792988 .. 3793022 +  -9.2  -3.65902   CTGGAACGCCGGTTC    CCCGGG-CCGCAGCC GCATCA GGCTGCCATCCCGGG     TTTCGCTCAGGTAGA  68 523
JJQ57_RS17865 3795670 .. 3795682 + -10.5  -3.04144   GCATATCGGCGGATA                GCGCC CAT GGCGC                TATTCGCCCTACCCG  62 138
JJQ57_RS17885 3801742 .. 3801752 +  -2.4  -3.15861   GGTCCAGCGGCATGC                 CCAC CGA GAGG                 TTGCTGCGGATCGTC  42 203
JJQ57_RS17920 3809545 .. 3809592 + -11.1  -2.89564   GAACACCTTATGTCG CGCCCGCCG-GGCGGCATGCCG CGACA TGTCACGCCGCCACGACGAGCG TCTATCCAATAACGA  64 123
        bglX 3811960 .. 3812006 + -15.7  -2.75064   CGGGCGAACGGCAGC GCCTCAGCCCTCGGCCCGG AGCCAACAC CCGGGCCGGGGGCGGCGCC TGGTTCCCTCAACCG  78 73
        pscN NONE
        pscO NONE
        pscP NONE
        pscQ NONE
        pscR NONE
        pscS NONE
        pscT NONE
        pscU 3837743 .. 3837758 + -11.8  -4.02424   TGGCGCCGAAAAAAA              GGGGCC CGAA GGCCCC               TTTCTCATGCTTGCT  83 95
JJQ57_RS18125 3843248 .. 3843262 +  -5.6  -3.60792   TGGCCCCGGCGATCC               GCGCAT AGG AGGCGC               TTTCCCGCTTCGGCC  57 457
JJQ57_RS18160 NONE
JJQ57_RS18165 3849633 .. 3849645 +  -3.3  -3.09492   ACCCGCTCGCCGAGG                TCGTG GCG CTCGA                TATTGACGTTGGCCA  44 447
JJQ57_RS18175 3850996 .. 3851008 +  -4.7  -2.71924   CTTGCGGCGAGAAGA                CGAGC GGC GCACG                GTTTGCCCACGGCTC  44 104
JJQ57_RS18180 NONE
JJQ57_RS18185 3852025 .. 3852039 +  -3.5  -3.01712   GGCCGCGACGAGTAG              C-CGGC AAGC GCCGAG               TCTTGCCAGCGGCCC  43 26
        folE 3852671 .. 3852688 + -14.1  -4.39318   CCGCTGGCGAAAGAA             CCGGCCC CACT GGGCCGG              TTTTGCGTTTCCTTC 100 49
JJQ57_RS18200 3853864 .. 3853874 +  -8.2  -3.18681   AGCCAGGAACGCCGC                 GCGC CCA GCGC                 TTCCTGCAATTCGCG  56 90
JJQ57_RS18290 3875720 .. 3875751 + -12.2  -3.15861   CGCTCCCCGGTCGCC      GGCTGAGCCGCGACC GCC GCACGCGGC-CAGCC      TTGCTGGCCGTCGTG  70 20
JJQ57_RS18295 NONE
JJQ57_RS18300 3878702 .. 3878714 +  -3.3  -2.50016   TGACCCCATGATCTC                GTCGT TCT ACGCC                ATGTTCATGCTGCGC  39 30
JJQ57_RS18310 3883994 .. 3884005 +  -4.4  -3.48276   ATAACTGAAAATCAG                CCTT AGGG AAGG                 TTATATAAAAAACCA  51 37
JJQ57_RS18325 NONE
JJQ57_RS18335 3888989 .. 3889016 +  -4.6  -3.35996   CAGCAGGCTCGGACT        CAGCGCCAGGGC GATC GCCAGGGTGCCG         TTGTGGATGCCGATC  51 176
JJQ57_RS18350 NONE
JJQ57_RS18355 3894029 .. 3894041 +  -9.1  -2.78463   GCCTCGGTCTGCAAC                GCGTC GTC GACGC                TCTGGTCCACCAACT  55 256
JJQ57_RS18365 3896528 .. 3896539 +  -7.2  -3.25823   CAATTGGGGTTCTCC                GCCG GATA CGGC                 TTGATCTCCGCCACC  54 207
JJQ57_RS18375 3897483 .. 3897500 +  -5.5  -3.28487   ACCTCGGCCTGGTTG             CCGCG GAACTCGA CGCGG              TCTTCCTTGCTCTGC  51 62
JJQ57_RS18395 3901394 .. 3901436 +  -2.6  -3.96148   GATAGATGCCGTACT GGTCGGCCTGGGTCGAGCGG CACTT CCAGTCG-CCCAG-CAGGCC TTTCTCGTCGACGGC  56 337
JJQ57_RS18450 NONE
JJQ57_RS18455 3915700 .. 3915748 +  -8.5  -4.56597   CCGTAGGCTGACGCA TCGGCGACCTGGCGGCGCAGCGT CAT GCGTCTCGCCGCCAGGCCAACGC TTTTTCCCCGAGCGA  86 30
JJQ57_RS18460 NONE
JJQ57_RS18465 3917788 .. 3917804 + -15.1  -4.99861   CCGCAGACGCAAAAA              GCCCCGC ATC GCGGGGC              TTTTTCTCCTTCGTC 100 43
JJQ57_RS18525 3929625 .. 3929645 + -11.1  -5.23292   CGCACCCTCCTGACA            GCCCCGC ACTCGAC GCGGGGC            TTTTCTTTTCTCTGA 100 52
JJQ57_RS18530 NONE
JJQ57_RS18535 3930595 .. 3930630 +  -9.1  -5.07486   CTTCTCGATCCTCCC    GTGAGGGACATGCGCT CATAA GGC-CATGTCCCTCAA    TTTTTCTTCCCCATC 100 64
JJQ57_RS18540 3931440 .. 3931473 +  -9.5  -3.66844   CCACTTTCAACCCAC     CGGGTCCAATTCCCG GTGG CGGGGATTGGCTCCA      TTATTCAAATCTGGA  68 49
JJQ57_RS18545 3932278 .. 3932308 +  -4.5  -2.77781   TTGTTCTCCCCCATA       CCGGCCCGTCTCC CTCCC GGAACCGGGCTGA       TCCATTTTCATAGGA  42 69
JJQ57_RS18550 3932620 .. 3932635 + -10.4  -5.18726   GCCTGACCCAACCAA              GCCCCT TTCG AGGGGC               TTTTTCTTGTCCGCA 100 35
JJQ57_RS18555 3933778 .. 3933803 + -11.9   -5.5112   GCGACTGCCCCACAA         GCCTTCCATCCG TTT CGG-TGGAGGGC         TTTTTTCTTCATCCA 100 92
JJQ57_RS18560 3934217 .. 3934233 + -10.8  -4.64861   CGCATACCCCTTGAA              GCCCCC ATTTC GGGGGC              TTTCTTTTGGGCGGA  95 53
JJQ57_RS18565 3935479 .. 3935504 + -16.1  -4.89233   GCTTCGTTCTGATCC         GGCATGGCCCC TCAC GGGGCCTTGCC          TTTTTCCTATTCCTC 100 29
JJQ57_RS18570 3936260 .. 3936295 +  -7.5  -4.31433   GTTCTTCATCCACCC   GCCGGGGTTCCTTCCCC ATGC GGGGGTGG--CCTCGGC    TTTCTTCTGGAGGTC  76 63
JJQ57_RS18575 3936680 .. 3936692 +  -4.7  -3.61398   CACGCGGCATTCCAT                CACCC GCT GGGGG                TTCTTCCCCACGGGG  55 65
JJQ57_RS18580 NONE
JJQ57_RS18585 3937439 .. 3937473 + -15.6  -2.76046   CTGAGCGATTTTCTT     CCACCCCCTGGGGCAG TAC TTGCCCCGGCGGGCGG     TGCTGTTCCCGTTCA  78 37
JJQ57_RS18590 3938158 .. 3938188 + -14.1  -3.14132   GCGGCTTGACCCACC      TG-CGGAGGCACGC CTTG GCGTGCTTCCGCCA       TTCCTCCCCGCCAAC  76 32
JJQ57_RS18595 3939332 .. 3939347 +  -6.1  -2.74192   ATCCGCTGACTCACC              GGACG CGCTGC CGTCC               TGCTATTCCCACATC  46 32
JJQ57_RS18600 3939722 .. 3939753 +  -7.2  -2.81133   ATCGTCATTCTCATC      CACCTGACGGAG CCACTTCA CTCCGCCAGGGG       TGTCGTGGCTCAATA  52 50
JJQ57_RS18605 3940169 .. 3940209 + -16.2  -4.87133   ATTTACTTCCCACCA CGGGGCATGCCACTGCCCC ACTG GGGGTGGTG-CATGCCCCA  TTTTCTTTGGAGCAT 100 101
JJQ57_RS18610 3942561 .. 3942599 + -16.7  -5.14563   TCTGTTGTTCCCACC   TTGCAGCCACGCCCACG TTCTC CGTGGACGTGGCTGCGC   TTTTTTCATCCCAAG 100 78
JJQ57_RS18615 3942847 .. 3942863 + -13.7  -4.49556   AGACCCATTTTCACA              GGCCCCA ACT TGGGGCC              TTTCTTTGGTGAAGG 100 42
JJQ57_RS18620 NONE
JJQ57_RS18625 3944197 .. 3944207 +  -6.8  -3.09516   CGGCGACCAGACCCG                 TCGC GTG GCGA                 TTCCCTGATCGGAGC  51 7
JJQ57_RS18630 NONE
JJQ57_RS18635 NONE
JJQ57_RS18640 NONE
        traD NONE
JJQ57_RS18650 3949084 .. 3949117 +  -3.8  -3.09505   CCCCGATCTCCACGA     TCTAGCCATTGCTG ATCACA CAGGAATGGCGCGA      TGTTGGCTCCGATCT  45 91
JJQ57_RS18655 NONE
JJQ57_RS18660 NONE
JJQ57_RS18665 3950093 .. 3950116 +  -7.4  -2.87132   TGCTCACCGAAGCCA          CCGGCATC-CT GTA AGCGAGGCCGG          TATGTCCGAGCAGCA  53 12
JJQ57_RS18670 NONE
JJQ57_RS18675 NONE
JJQ57_RS18680 NONE
JJQ57_RS18685 NONE
JJQ57_RS18690 NONE
JJQ57_RS18695 3955059 .. 3955075 +  -2.2  -3.23899   TACGTAAGTCGACCC              GCTTGA GCCGG TCACGC              TTGCATTCATTAACC  43 20
JJQ57_RS18700 NONE
JJQ57_RS18705 3959061 .. 3959100 +  -4.3  -3.82604   TTCGCCTCGCATCCT GGTCGCGAACGATCGCCGC TGCC GCGGTGATGGAT-GC-ACC  TTGTTCGTTCCCTAG  58 90
        radC 3959693 .. 3959710 + -12.7  -5.60993   CTTCATTGATCCCCG             CGGAGGC TTCG GCCTCCG              TTTTTTTATGGCGCG 100 52
JJQ57_RS18715 NONE
JJQ57_RS18720 NONE
JJQ57_RS18725 NONE
JJQ57_RS18730 NONE
JJQ57_RS18735 3964803 .. 3964855 +  -2.1  -3.34222   CAATTCGATACCCGC CGT-TCGCCACGCGCA-TAGGCACG CCATACA CG-GCCAAATGCGCG-GCCGATACG TTCTGCGGTGCTGGT  44 317
JJQ57_RS18755 3968419 .. 3968429 +  -2.4  -3.53811   GATTCGGGCATTGAT                 CGCC ACC GTCG                 TTTGGCGACGATCAA  49 44
JJQ57_RS18820 3983626 .. 3983640 +    -7  -3.26546   AAGCCTCGGAGTGAA               CGGTGG GCT CCTCCG               TATTCGTCTCTTCTC  54 337
JJQ57_RS18835 3987949 .. 3987977 +  -7.5  -2.66373   ACGGCTCGACGAGCC        CGTGTAGATAGAT CGT GTCTATCTGCACA        TAGATTATTCCAGTT  51 293
JJQ57_RS18840 3989449 .. 3989472 + -12.4  -4.08706   CCGGCCAGCAACTGA          AGCCGGCGAA TATT TTCGCCGGCA           TTTGTCTGCTGCCCC  83 112
JJQ57_RS18845 3990798 .. 3990808 +  -6.8  -3.06302   GGATCGGTGTCGGCA                 CGCA GAT TGCG                 TTCGGTCGCCGTCAT  51 67
JJQ57_RS18855 3992008 .. 3992038 +  -7.5  -3.92522   AATTGACTCGCAAAG      CATCGATGCGCCGC TGTC GCG-CGCGGCGGTG       TTTCTCACGTTGACG  68 188
JJQ57_RS18860 3992930 .. 3992959 +  -9.9  -3.54129   GAGGCGGTGCAAGCG       TAATGCAGGGGCC ACAA GGCCCCTGCAAGG        TTTGAGAGCCCTATG  70 23
JJQ57_RS18880 3996288 .. 3996307 +   -10  -2.62184   GTCTACGACTGATTC            CGGCCTGCC CAC GGCAG-CCG            TGCTATAACCCAGGC  59 29
JJQ57_RS18885 3997291 .. 3997317 +  -3.6  -3.28041   GCGGACGCAGGCGAC         CTTGCCCTGG AACGGCC CCAGGACCAG         TTCCTCGTTGCGGTT  47 308
        sagS 4001302 .. 4001322 +  -3.9  -4.08945   CAGCAGCGATTCTTC            GACGCCA TCCGGCC TGGCGAC            TTTTCCCCGGGTGCT  61 497
JJQ57_RS18920 NONE
JJQ57_RS18925 4004290 .. 4004333 +  -7.3  -2.52896   CCCCGCATGATTATC AGGAGC-CCGTTCGCCCGCC CCGGC GGCCTGCGAACCGCGCTCCG TGCCTTCAGCCGTGA  50 84
        htpX 4005262 .. 4005280 +   -16  -5.60993   TTCACACTTGGGACA             GGGCGACC ATC GGTCGCCC             TTTTTTTATGCCCGG 100 47
JJQ57_RS18935 4006516 .. 4006537 + -18.7  -3.60234   TCCGCTGAAAATGGA           CGGGGCGCC GCGC GGCGCCCCG            TTTCAGCCTCTCTCC 100 33
JJQ57_RS18950 4008858 .. 4008887 +  -6.6  -2.71101   GGGACGCTCCTAGAC      TGCGGCGGAAA-TC AGAA GAGTTTCCGCC-CA       TGCCTTGTTTCCCCA  49 96
JJQ57_RS18955 NONE
JJQ57_RS18960 NONE
JJQ57_RS18965 NONE
JJQ57_RS18970 4014033 .. 4014053 +  -2.5  -2.78463   CGCGCGAGACCGCGA            CCTAACG TCTGGAT CGATAGG            TATCCTCAAAAACAT  39 21
JJQ57_RS18975 4015226 .. 4015243 + -14.1  -4.71426   CAAGCCCATGAAAAA             GCCCCGC CGAA GCGGGGC              TTTTGTTCATCGCGC 100 353
JJQ57_RS18985 4018153 .. 4018183 +  -5.3  -3.22223   AATAGCCGAGTTGCG      GCTCCAGC-GCCGCG GCA CGCGTCCGCAGG-GC      TTCCTGGTCGAGTTC  51 108
JJQ57_RS18995 4020381 .. 4020404 + -19.6  -3.05384   TGAGCGCGCCGCGGC          CGCTCCCGCC GCCC GGCGGGAGCG           TTCGCTAGAGCAGCA  93 38
JJQ57_RS19010 NONE
JJQ57_RS19020 NONE
        ohrR NONE
        ohrR 4025854 .. 4025871 + -14.1  -4.46212   AGCGGAAACGAAAAA             GCCCGGC GAAT GCCGGGC              TTTTCTCGTCGCGCG 100 73
JJQ57_RS19045 4027889 .. 4027915 + -18.8  -4.98531   GCCAGATCGCAAGAA         GGCCCGGCTAAT CAA GTTAGCCGGGCC         TTTTTCATTTCCGCA 100 37
        oprI 4028569 .. 4028586 + -10.5  -5.64274   ACGACCTGTTGAAAA             CCGGTCC CTCG GGGCCGG              TTTTTTTATGCCTGC 100 49
JJQ57_RS19070 NONE
JJQ57_RS19075 NONE
        greB 4034818 .. 4034848 +  -5.2  -3.64703   GCTTTAGCGGTATTT       CGGCTGCTGCCGGG CGC CCCGCAAGTTGCTG       TTTAAATCGGCGCAC  57 433
        thpR 4035483 .. 4035495 +  -5.5  -3.28712   ACCCGCCTCTTCCGC                TCTGC CAC GCAGG                TTATGACCGGCCGCC  52 43
        lipA 4036603 .. 4036624 + -18.7  -2.71712   AGCCTGTAGGACCCC           GGCCGGGGC CTCG GCCCCGGCC            CTTTCCCGGAAGCCC  87 32
JJQ57_RS19100 4037790 .. 4037815 + -16.1  -4.72272   CGCCGCAACGAAAAA         GGGCGGCCACC CGAA GGTGTCCGCCC          TTTTTCGTCGCCAGC 100 147
JJQ57_RS19115 4040946 .. 4040958 +  -5.5  -3.17723   CAGCTTTCAAGATAA                TGGCG CCT TGCCA                TTAGCTTGCCGATAA  51 122
JJQ57_RS19120 4042471 .. 4042499 +  -7.4  -2.71144   TCTGATCCGCAGGCG        CACCTGCCTATC GCCCG GATAGGCAGGAA        TCATTCGCCGCGCTG  52 36
JJQ57_RS19125 NONE
JJQ57_RS19130 NONE
JJQ57_RS19135 4045419 .. 4045437 +  -2.3  -3.61398   GCGGAAACGCATCCA            GCCGC-CC ATCT GGCGCGAC             TTGTTCGAAGAGAAC  48 337
JJQ57_RS19175 4053513 .. 4053553 +   -11  -2.77899   GCAGCAACAGGTAGT TGGGC-GCCGACCAGCAGC GCCC GCCGCTGGACGGCAGGCCG  TCGTTGATCGCCGCG  60 270
JJQ57_RS19185 4054885 .. 4054911 +  -4.3  -3.86346   CCCGCGCCACAACAA        GGCCTGCTCGGC GGCC GCCTT-CAGGCC         TTTCTCGAACAATCC  58 166
JJQ57_RS19200 4057435 .. 4057478 +    -8  -4.72272   CAGGCGAAAAACCGG CGAGGCGAAGGCTCGCGTGGC GGA GTCATGCGGGCCG-CGCATGG TTTTTCCTGCGCAAC  86 89
JJQ57_RS19205 4058351 .. 4058375 + -14.3  -3.71848   CTGAGCTACCCGTTC          CGCCTGATCTC CGA GTGATCAGGCG          TTCTTGATCACCAGC  88 8
JJQ57_RS19215 4061089 .. 4061099 +  -2.4  -3.15544   CGTTCCGCTGCAACC                 ACCC CAC GGGA                 TTCATCGGAGTCACC  43 66
JJQ57_RS19220 NONE
        atuC 4063596 .. 4063611 +  -2.5  -3.35679   GCTGAAGGGCAACAG              CTTCG GGGTCG CGAGG               TTCTGACTGAAACAG  45 4
        atuD NONE
        atuE NONE
        atuF NONE
JJQ57_RS19245 NONE
JJQ57_RS19250 4071095 .. 4071119 +  -5.5  -4.67048   TGGCAGGGGCGCGCT          GCTCCTGCGGC GGT GCTTCCGGGGC          TTTCTTTTCCGGTGC  76 515
JJQ57_RS19320 NONE
JJQ57_RS19325 NONE
JJQ57_RS19330 4086320 .. 4086332 +  -2.6  -3.07113   AGAACGAATGCTGGC                CGGG CTTTT CCTG                TTCCGTCGCATGATC  41 348
JJQ57_RS19340 NONE
JJQ57_RS19345 NONE
JJQ57_RS19350 NONE
JJQ57_RS19355 4092422 .. 4092444 +  -8.3  -2.90615   GCGGACGTGCACGTT           GTGCCGGCG CTGCT CGCCGACGC           TGGTTTCGCAGCGGT  54 212
JJQ57_RS19375 NONE
JJQ57_RS19380 4096428 .. 4096477 +  -6.2  -3.37493   CGGCGAAACCGCGAC CCTGCTCGCCGGCCCGCGCGGCC TCGAT GGCGGCGTTGAG-GGCAAGCAGG TTGGTCTGTTCGGCG  55 456
JJQ57_RS19395 4099980 .. 4099997 +  -9.1  -4.07568   GACTGGCCGAGCGCT             TCCTGGC CTGA GCCAGGG              TTTTCAACGGGCGCG  76 15
JJQ57_RS19400 4100837 .. 4100849 +  -6.2  -4.62069   ACGGCGCGCCCTGAA                CGGC GTCCG GCCG                TTTTTCACCTCGACC  76 27
JJQ57_RS19405 NONE
JJQ57_RS19410 NONE
JJQ57_RS19415 4103135 .. 4103145 +  -3.2  -3.35679   CCAGCTCCGGATCGC                 CTTC GTC GAGG                 TTGTCGATCACCCCG  48 82
JJQ57_RS19425 NONE
JJQ57_RS19440 4108479 .. 4108496 +  -3.3  -3.65902   TGCCGAAGGCGGCGT             ACAGGCT GGGC GGCCTGA              TTTCCATCGCCTCGG  53 485
JJQ57_RS19450 4109874 .. 4109913 +  -8.4  -3.07787   CCTTCCCTCCCATGC  ATCGTTCCCGGGCGCGGC CACG GCTGCGCTCGCGGAGGAG   TCTTGCCGTGCTATT  57 44
JJQ57_RS19455 NONE
         cif 4112498 .. 4112510 +  -3.3  -3.61715   ACCCACTTACAATGA                TCCCG ACC CGGAA                TTATTCCGCCAAGTG  51 443
JJQ57_RS19465 4113253 .. 4113311 + -10.9  -2.85668   GGAGCGCATGCTCGG CCGTCGCCAGCGCCGCTGAGCGGGGCC CTTCGTC GGCTCT-CGCGGCGGCTC-GGCGACGA TCTGCTATAGAGGTA  64 7
JJQ57_RS19470 4113691 .. 4113711 +   -14  -2.77899   AGCGCACAACGAAAA            CGGCCCTC GCAAG GAGGGCCG            TCGTTCATCGCGGCG  72 41
        paaP 4117345 .. 4117366 + -10.1  -5.14563   CAGGTTCCCCATCCA           GGCCCGG CTCATCCA CCGGGCC            TTTTTTCATCGGCGC 100 71
JJQ57_RS19500 4121992 .. 4122015 + -14.6  -3.25073   GGGGCGCTGAAAGCG          GCGCGAGCGGC CAT GCCGCTC-CGC          TATTCCTCTTCGACG  80 31
JJQ57_RS19515 NONE
JJQ57_RS19520 4128419 .. 4128451 +  -9.9  -2.74485   CGACGCCTGACCGCC     TGCCACCCGCGACC CTTGCC GGTCGCGGGTC-CA      TAGTGTCTCTCCTTC  60 31
JJQ57_RS19525 NONE
        cobM 4129741 .. 4129765 +  -4.1  -5.14563   CGACAGCGGGCCGGC          ACGGCTAGCGT TCA GCGCTGGCCCC          TTTTTTCCTGAAGCC  84 103
JJQ57_RS19535 4130982 .. 4131007 +  -6.9  -3.40403   ACAGCTCCTCGACAC         GGGACTGCA-CT TCC GGCTGCAGTTCC         TTGTAGTCGGCACGC  56 268
JJQ57_RS19555 4135861 .. 4135876 + -10.4  -5.55664   AAGGCAAACGAAAAA              GGCTCC CTCG GGAGCC               TTTTTTTCATGCTGC 100 39
JJQ57_RS19580 4140237 .. 4140262 +  -6.1  -5.97575   TCCTAATGGTCTTGA         CCCGGATTC ATCCCCCA GAACCCGGG          TTTTTTTTATCCGTT 100 203
         maf 4151062 .. 4151085 + -18.2  -4.03234   GCATTCCCATATAAA          GAAGCCCGGC TTCA GCCGGGCTTC           TTTATATAAGGAAGG 100 60
         rne 4157492 .. 4157511 + -13.6  -5.40072   GACAGGCTGAAAAAA            GGGGATGC CATG GCATCCCC             TTTTTTTGCGCGCCA 100 43
JJQ57_RS19715 4165150 .. 4165166 + -13.7  -4.73388   GCCGGACATGAAAAA              GCCGCCT CGA AGGCGGC              TTTTTCGTGGGCCTT 100 44
JJQ57_RS19735 NONE
JJQ57_RS19740 4169468 .. 4169482 +  -4.2  -2.69468   CAACCCTCGAACAAG               GAGCCA CAG TGACTC               TCATCTATGGACATC  42 14
JJQ57_RS19745 4170208 .. 4170236 + -18.9  -2.70932   CGCTGAGCACATCCC        CTCCGGCCGGC TCAGGCC GCCGGCCGGAG        TCCTTCAAAAAAGCC  87 35
         mfd NONE
JJQ57_RS19810 4186372 .. 4186387 + -11.8  -5.95166   CGCAATAGCGAAAAA              GGCCGC AATA GCGGCC               TTTTTTTTCGTTGCG 100 33
        lexA NONE
        sulA 4190616 .. 4190628 +  -4.7  -3.95219   CGACGCAGCACGATG                CGCCC GTC GGGCA                TTTCTACGATTTCAA  61 237
JJQ57_RS19870 4199419 .. 4199449 +  -9.6  -2.53271   ATCGTCCGCGCACGG       CTCGCGCCACTGGT TCA GCCACTGGCCCGGG       GTATTCTGCCAATAG  54 201
JJQ57_RS19880 4200348 .. 4200379 + -19.4  -3.73224   AGCCTGATTTCTCCC      CGCTCGGCCGGGGC CTGC GCCTCAGCCGAGCG       TTTCCTCGGCGCTCA 100 34
         slt 4205293 .. 4205310 + -14.1   -3.6215   TCTGACCCCCAACCC             GGCCCGG ACGC CCGGGCC              TTTCCAGTACCTTGA  81 36
JJQ57_RS19900 4205736 .. 4205764 + -19.5  -3.18264   TCTGATCGCCGGCAA        TGGCCGCCCGCCG CAA CGGCGGGCGACCG        TTCCTCAGTCGAGGA  95 36
JJQ57_RS19930 4213972 .. 4214030 +  -6.5  -4.37658   GTCGAAGCCGGATTG CCCGGCAGGCCGATCACCGGGATGCTCTG GAA CTG-GCCGA-CGGTCAGCGGCTTGCCGGG TTTTATCGCCAGCTT  73 367
        mobA NONE
JJQ57_RS19950 4216455 .. 4216485 + -17.7  -4.19735   ACAGGTTTTCCTGAA      GACCCCGTCGACTC GAAC GAG-CGACGGGGTC       TTTGCTTTTCCGCCC 100 53
JJQ57_RS19955 4216670 .. 4216686 + -10.8   -5.4833   CCATATCCCGAAAAA              CCCGCC TCAAC GGCGGG              TTTTTTATTGCCTGC 100 38
JJQ57_RS19975 NONE
JJQ57_RS19980 NONE
JJQ57_RS19985 4221913 .. 4221928 +  -5.4  -3.16742   GGAATAGCGGGAAAG              CCC-GTC CTA GACAGGG              TTCGTGCCAATTCGC  48 34
        opdQ 4223406 .. 4223427 + -15.9  -3.72893   CCGCGGCGGAACGAA           GAGGCCACC CTTG GGTGGCCTC            TTTCATGGCGGGATG  90 93
JJQ57_RS20000 NONE
JJQ57_RS20005 NONE
JJQ57_RS20010 4226254 .. 4226286 + -15.6  -2.71712   AGAAAGGCCGTTGAA     GGATG-CGCCGACCG GCAG CGGTCGGCGCCCTCC      GTTTCCCCCAACGCG  78 27
JJQ57_RS20015 4228074 .. 4228099 +  -8.2  -2.71144   CCCGGGGCTGCGCGG         CGTCGCGGCC GAAAGA GGTCGCGAGG          TAGTTGCGCAGGGTC  52 398
        dacB 4233104 .. 4233131 + -19.8  -4.19817   CGCAGTACGAAAAAA        GGCCGCCAGCGG TTGC CCGCCGGCGGCC         TTTTGCATGAATACC 100 43
         rmf 4236071 .. 4236088 + -12.7  -4.27316   CGGGCGCAAGCCCAA             GGGCTCC GCAA GGAGCCC              TTTTCAATTCCGCCG  95 92
JJQ57_RS20060 NONE
JJQ57_RS20065 4239572 .. 4239582 +  -4.6  -3.65902   GTCAACACCGATGCC                 TGCC GCC GGCG                 TTTCACTGCACTGGC  55 92
JJQ57_RS20070 4241637 .. 4241647 +  -8.2  -3.12847   CCTACCGCTGGGCTT                 CGGG AGC CCCG                 TTCCCTCTCCCGCTT  58 85
JJQ57_RS20085 4243021 .. 4243048 +  -9.9  -3.85817   AGGAAGCAAAAAAAG        GAGCCGATTCA ACCGGG TGAATCGGCCC         TTTCTGAAAGACCCT  76 6
JJQ57_RS20135 NONE
JJQ57_RS20140 NONE
JJQ57_RS20145 NONE
JJQ57_RS20150 NONE
JJQ57_RS20155 NONE
JJQ57_RS20160 4268900 .. 4268913 +  -5.9  -2.90723   GCCACCGCTCTATCC               GCGCT GAAC GGCGC                TATGGTTAGGACTGG  48 19
JJQ57_RS20165 4270063 .. 4270099 +  -7.2  -3.74693   AGAAGTCGTAGCTCA   GGC--GCAGGTTGACGGC GCT GCCGCCGACCCGCTCGCC   TTTCGTCCCCTGCAG  65 49
        cprR NONE
        cprS 4275289 .. 4275306 + -14.1  -3.02144   TCCGCGCGAAAAAAA             CCGCGGC CGGG GCCGCGG              TCTTGGCGAGGCTCG  75 57
JJQ57_RS20235 4290852 .. 4290884 +  -6.1  -2.79183   GCCCACCACGGGATG      CCGCCCGGCCTCG CCGAGCA CCAGGCCGGCCAG      TGTAGTACCGGTACC  47 371
JJQ57_RS20255 NONE
JJQ57_RS20260 4297858 .. 4297872 + -12.8    -4.258   ACGGAAACGAAAAAA               GCGGCC ATT GGCCGC               TTTCTTCGTGGCTCA  95 257
        xcpP NONE
        xcpQ 4308816 .. 4308841 + -14.7  -4.13014   CTCATACGAAAAAAA         GGCGCTGCTCC TTTC GGAACAGCGCC          TTTTCCGCATCTCCC 100 64
JJQ57_RS20415 4328246 .. 4328260 +  -5.6  -3.04144   CAGGACGAACGCCAC               GGGTAG GCC CTTCCC               TCTTCGCCGTCCGCG  49 48
JJQ57_RS20430 4331130 .. 4331145 + -11.8  -5.08824   AACGAAATGAAAAAA              GGCGCC CGAA GGCGCC               TTTTTTCGATCACCG 100 31
JJQ57_RS20440 NONE
JJQ57_RS20445 4333565 .. 4333582 +  -2.7  -3.53811   GCGGCAACAGCTCGC             TCCA-GGG CAT CTCGTGGA             TTTCGCCGCCATCGC  49 249
JJQ57_RS20505 NONE
JJQ57_RS20510 4343108 .. 4343146 + -10.4  -3.40403   TTTTCCTCCAGTTGG  CGGA-TGCGCTTGCTGA TCTCGC TCGGCGAGCGCAGTTCG   TTCTCGTAGCGCCCG  65 138
JJQ57_RS20520 4346403 .. 4346434 +  -7.4   -4.7497   TCCTGTAGGGAAAAA      GGGGAAGTCA TCTGGAGAGGCT TGACTTCCCC       TTTTTAATCAGTAAC  86 33
JJQ57_RS20525 4346548 .. 4346569 + -15.1  -4.94972   GGAGCCAAATTCAAA           GCCCTCGGC ACAT GCCGGGGGC            TTTTTCGTTATCGTG 100 34
JJQ57_RS20615 4367132 .. 4367142 +  -8.2   -3.5393   CGTCGCTTGCGCCCC                 GCCC GTC GGGC                 TTTCCAGGCGCTGCT  65 44
JJQ57_RS20620 NONE
JJQ57_RS20625 4370151 .. 4370167 +  -3.6  -4.57569   GGACGAACCGCCACA              ACCCTG CAGTT CAGGGA              TTTTTGAGGAGCTCG  69 181
        fabA NONE
        fabB 4371950 .. 4371965 + -11.8  -5.24129   CCATCGCCGCATGAA              GCGCCC TTCG GGGCGC               TTTTTTGTACCCAGC 100 47
JJQ57_RS20640 4373715 .. 4373738 +   -16  -3.18681   TCGTCTGACCATGCC          GTGCGCCGTC TCAC GGCGGCGCAC           TTGCTGCGGTTGCCC  86 33
JJQ57_RS20645 4374640 .. 4374650 +  -8.2  -3.27476   TAGAGCAGCGTCAAA                 GGCG TAT CGCC                 TTCCTGCTTGCCGCT  58 413
JJQ57_RS20660 NONE
JJQ57_RS20665 4377371 .. 4377383 +  -2.6  -3.76885   GCTCGCCTGACCTGA                GGCC ATTGC GGTC                TATCTTTTTTTCCGC  52 26
JJQ57_RS20675 NONE
JJQ57_RS20680 4382075 .. 4382090 +  -2.4  -3.01791   CATGAGACGCTCGGC              CTCGCC ACCC GGCGGA               TATTCACGGGGAAAT  41 438
        panB 4383484 .. 4383528 +  -5.6  -2.64616   CGGTGAAGGAATGCA CCG-CGCCGCCGTAG-CTGGTG AGC TGCCAGTCGACGCCGGCATCGG TCATCTCCCTGGCGA  44 152
JJQ57_RS20720 4388800 .. 4388815 + -11.8  -4.72272   ACGTACCCTGAAAGA              GCCCGC GCAA GCGGGC               TTTTTCATGCCCGGG 100 51
        gltA 4404516 .. 4404531 + -10.4  -5.24129   ACGCCCGGCGAGAAA              GGCTGC TTCG GCAGCC               TTTTTTGTGCCCGCC 100 49
JJQ57_RS20800 4407111 .. 4407133 +  -3.3  -4.19238   CGAAGTCGAACTCTC           CGGCCAGCA TGCTC TGGTGGCGG           TTTTCCAGTTGCCAG  63 220
JJQ57_RS20810 4408513 .. 4408534 +  -5.8  -3.04322   AGGCTTGGGCATACT           GGCGGG CCTTTTCAAA CCCGCC            TGTTCACCCCTTCAG  49 94
JJQ57_RS20815 4408860 .. 4408874 + -12.8   -5.4505   GGGCAGACAGGAAAA               CCGGCC GCA GGCCGG               TTTTTTCTTGGCCGC 100 45
JJQ57_RS20830 4411118 .. 4411135 + -14.1  -5.53288   CAGCACGACTTCGAA             GCCCGGC ATCC GCCGGGC              TTTTTTTCGCTTGCG 100 49
JJQ57_RS20840 4413782 .. 4413813 +  -2.1  -4.07568   GCCCGATCCGCTCCT      GACTCCGG-CGCGC CCGCC GCGCCACCAGCGTC      TTTTCAAGCCAGGGA  57 24
JJQ57_RS20845 NONE
JJQ57_RS20850 4415608 .. 4415638 + -10.4  -4.53777   GTTGAGCCGCTTTCC       GGGCGCCTCC TCAGCCCATTC GGGGGCGCCC       TTCTTTTTCCTTCGG  95 36
JJQ57_RS20855 4415958 .. 4415978 +    -6  -3.07994   CTCCGGCCCCGCGCA            ACGGCGGG GCCGG CCTGCCGC            TTGCATGCCGTTCCG  49 46
JJQ57_RS20860 NONE
JJQ57_RS20865 4418994 .. 4419004 +  -6.8   -3.7941   GGCCGCCGGGCGCCA                 GGTC GCG GACC                 TTGTTGTGCAGCATC  64 209
        acnA 4423305 .. 4423324 +   -15   -4.8622   GGCGGTACGCGCGGA            GGGGTGGC TTCG GCCACCCC             TTTTTCATTCCGGCG 100 47
JJQ57_RS20885 4425222 .. 4425258 +  -8.6  -2.53876   CGCTTCAACCGCTGA   GATCAGGCCGCGGGGAG GAAG CTCCCCGCG-CCTGCCG    TCACTTGAAGTCCCA  53 26
        ccoN NONE
        ccoO NONE
JJQ57_RS20910 NONE
        ccoP 4430497 .. 4430518 + -18.7  -2.71483   TGACCCCTCCCCCCA           CCCGCGCCC TCCC GGGCGCGGG            TCCTTCCCCCGGTCT  87 38
        ccoN NONE
        ccoO NONE
JJQ57_RS20930 NONE
        ccoP 4434072 .. 4434094 + -17.7  -5.18371   CCCCCACGACCCAGA           CGGCGCCGG CAACC CCGGCGCCG           TTTTATTTTGTGCAA 100 51
        ccoG NONE
JJQ57_RS20945 NONE
        cadA NONE
        ccoS NONE
JJQ57_RS20960 4439633 .. 4439646 +  -2.3  -2.90212   CTTCCCGACTAAAGC               TCGCC AACT GGGGA                TCTCTGGCATGCTCG  40 131
        hemN 4441064 .. 4441082 + -11.6  -2.57931   CCTGCCCGCACGACA             GGGCGGTG AAT CCCCGCCC             CTTCTACCGGCTGCC  65 52
         anr 4442550 .. 4442579 + -20.8  -2.78384   GCGCCTGCGAACCGC       CAACGGGCCCGC CTCAGC GCGGGCCCGTTG        TATGATGGGCCCCGA  91 42
JJQ57_RS20980 4443170 .. 4443196 +   -13  -3.13164   CGACGAGCGTTGATA        CGCCGGGGCGC GCCCTG GCGCCCCG-CG         TTCGCTCCTTGCGCC  73 28
JJQ57_RS20985 4444277 .. 4444295 +   -16  -4.44667   CCGCTCCGCCCCCGA             CGCCAGGC CCC GCCTGGCG             TTTCTTATTCGAGAG 100 59
JJQ57_RS20990 NONE
        mdtI 4445644 .. 4445667 +  -5.9  -2.55351   CCCATGCAGTTCGCG          CACGCCGACG ATGAA CG-CGGCGGG          ATTGCTCTCCACGAA  46 326
JJQ57_RS21005 NONE
JJQ57_RS21010 NONE
JJQ57_RS21015 4449689 .. 4449705 +  -7.9  -3.28924   GGAAATTGGCCATGA              TGCAGGC GAA GCCGGCA              TTCTCCACGCCGATG  56 475
JJQ57_RS21040 4454601 .. 4454638 +  -7.7  -2.60194   TGGAGGCGGCCCCGC   CAGCCACACCCCGGCACA CGA TGTTCCCGC-TGTGGCTG   CTTCCTTCCGGACCT  51 78
JJQ57_RS21075 4464244 .. 4464261 + -12.7  -4.61873   CCCGCCCCTGGGAAA             CGGCACC TTCG GGTGCCG              TTTTCGTTTATGGGG 100 45
        xdhA NONE
        xdhB NONE
        xdhC NONE
        guaD 4470552 .. 4470568 + -15.1  -4.81083   GGCGGAAACGAAAAA              GCCCCGC ATC GCGGGGC              TTTTTCATGCTTCGG 100 46
JJQ57_RS21105 4473539 .. 4473560 +  -6.5  -2.78216   CTCGCCTTGCAGCAC           CGGCTGGTCG CAG CGGCC-GTCG           TGGTTGGTCAGGGTG  47 476
        puuE NONE
        uraD NONE
         alc NONE
JJQ57_RS21130 4477151 .. 4477162 +  -4.4  -2.79915   CAAGAGGTACAAGAC                TGTG GAAG CACA                 TCTCATCGAATGGCT  42 73
JJQ57_RS21135 4478716 .. 4478756 + -12.8  -4.32048   AAGGGCTCCGAGAGA  GTGCGCAACTTTTTGC AAGCGGTGC GCAAAAAGTTGCGCAA  TTTTCAGTGTTCTTC  95 312
JJQ57_RS21140 4479447 .. 4479470 +   -11  -3.35679   GAGTTGACAGGCACA          CCGGTCGTAC ACCT GTGCGATCGG           TTCTCCGTCGAGCCG  69 39
JJQ57_RS21145 NONE
JJQ57_RS21150 NONE
JJQ57_RS21155 NONE
JJQ57_RS21160 4485402 .. 4485426 +  -6.4  -3.87925   GCCAGTCTGCCGTTG         TGCACTCCAGC AAGC GCTGGCG-GCA          TTCTCTTTGCTCGTT  65 166
JJQ57_RS21165 4487354 .. 4487375 +  -8.7  -5.78622   GTCCGCCCTTCCCTC           G-GGCCGGAC TTC GTCCGGCTTC           TTTTTTTTCCGCTCG 100 68
JJQ57_RS21180 4489832 .. 4489871 +  -5.7  -3.01712   AATCGCGTGCCGCCC CCGCCCCAGCGCCGGCTTCG CAC CGA-G-CGGCG-TGACGCGG TATTCGACCCGCGGC  49 58
         gcl 4492825 .. 4492841 +  -3.6  -2.91276   TTTGACCGAACGATA              GGAGCA AGACA TGCCCC              GTTTCTGCGCCAACC  42 111
         hyi NONE
JJQ57_RS21200 4494648 .. 4494687 + -10.8  -3.33696   CGAAGGGCTCGGGGA GAGGAACGGTCGGCGAAC TCCGGT GTTCGCCG-CCGC-CCTC  TTCCTTCCCCGCCCA  69 91
JJQ57_RS21205 NONE
         pyk 4497758 .. 4497786 +  -7.4  -5.95946   GCCATGGACATTCAA        GGCCTCCGGT TCAACTCCT GCCGGAGGTC        TTTTTTTCTTCTTGG 100 204
JJQ57_RS21215 4498836 .. 4498885 +  -6.2  -2.66634   CGGCAGCCTCGGCGC GCGCCTCGGCCGGCGGCGCTCCT GAGCA GGGAACGCTGGCG-CCGGCGGGC TAGTCTGGTAAGGTG  46 1
JJQ57_RS21220 NONE
JJQ57_RS21225 4500382 .. 4500425 +    -3  -3.37259   AGCGCCTGGAACAGC CGGCCTGAGCCGCACG-GGAA AAT TTCTTCGCGCCGCTTAACCCG TCTTTCGCCGTGCTT  46 18
        muiA NONE
JJQ57_RS21235 4503318 .. 4503341 + -18.2  -4.87893   CCGCTCGACGAAAAA          GCCGGAAGCG CTCG CGCTTCCGGC           TTTTTCATTCGGCTT 100 48
JJQ57_RS21250 4506159 .. 4506210 + -16.7  -3.22388   CAGGCCTGACTCCCC TCG-CGGGCAGCC-CCGGAGACAGGC CGG GGCTGTG-CCGGTGGCTGCCCGTCGA TTAATCGATTGACTG  86 32
JJQ57_RS21255 NONE
JJQ57_RS21260 NONE
JJQ57_RS21265 4510394 .. 4510412 +  -7.4  -3.57144   CGGTGGCGCGCACCC             GCGGCT GGCGCTG AGCCGC             TTTCAGCGTCCCGGC  62 12
JJQ57_RS21280 4514210 .. 4514242 +  -9.7  -3.11634   GGACGGACCGGGCTG      CGGCTGGCTTTGCGG CGG CAGCGAGGCCGGCGG      TTCGCTGGTCTGCGG  59 332
JJQ57_RS21335 NONE
JJQ57_RS21340 NONE
JJQ57_RS21345 4524514 .. 4524526 +  -9.1  -3.05844   TCGAAGCCCTCCAGG                TCGCC ATC GGCGA                TCTTCAGGTAGGGCA  57 500
JJQ57_RS21370 4528074 .. 4528113 + -11.3  -3.03124   CAGGCGCGCCACCAG  CTCGGCCTCGGCCTGCG ACAGCC CGCAGGCCTGGGTCAGG   TCTTCGGCGCTGGCG  62 89
JJQ57_RS21500 NONE
JJQ57_RS21505 4554049 .. 4554089 + -13.1  -3.29461   CACGCCGCTCGACGC  CGACCCGCAGCGTGCCGCC GGC GGCGGTGTGCTGGGCGGCG  TTGTACAGCAGGTTG  73 339
JJQ57_RS21530 NONE
JJQ57_RS21535 4563074 .. 4563099 + -12.6  -3.54459   CGGGGATGCCTGATA         GCGAGTCCGG AGCGGG TCGGACTCGC          TTTACAGCGGATTCG  77 28
JJQ57_RS21550 4565664 .. 4565684 +  -3.2  -3.54741   CGGCTGGGCTTCGCG            GTGCAGCT CTGTT ACCTGCGC            TTTCCCGGCGTCATC  51 498
JJQ57_RS21580 4569893 .. 4569916 + -18.2  -3.03124   CGACGCATAAAAAAA          CGGGAGTCCC CGGA GGGACTCCCG           TCTTGAAAGGTCGAG  90 50
JJQ57_RS21585 4571119 .. 4571143 +  -4.1  -3.65046   GGTGGAACGCACCTT          GGCCGCCAGCG GGT CGTTGAAGGTC          TTGTTCAGGTCGGCG  54 320
        ndvB 4574493 .. 4574505 +  -6.2  -2.52543   ACGGCCGGCCCCGCT                CGCC TAAAC GGCG                TCCCTTCGCCCACGT  45 60
        dapE NONE
JJQ57_RS21605 NONE
JJQ57_RS21610 4577001 .. 4577018 + -12.7   -4.4078   CGCTGGATGACAAAA             GCCCGTC TCGC GACGGGC              TTTTGCTTGCGGGAA 100 98
JJQ57_RS21630 4583600 .. 4583622 +  -4.7  -2.78384   AAGCCTGCCAGTGAT           CGCGCGTCG CTGAA CGGCGTCCG           TGTCGTGGCCGGGCA  44 27
JJQ57_RS21635 4585185 .. 4585201 + -10.8  -3.81146   GGTAGAGATAAAGAG              CCCCGC CTTGT GCGGGG              TTCTTCATTAAAGAG  76 101
JJQ57_RS21640 4586046 .. 4586057 +  -2.2  -4.84359   TACTCGCTCTACCCC                GGCT ACCA AGTC                 TTTTTCTCGGCCTCG  74 69
JJQ57_RS21645 4587753 .. 4587771 +  -5.3  -2.69151   GGCACGACACCAACA            C-CACCTC CCCG GAGGTGCG             TCATGTCTGACGCCC  44 62
JJQ57_RS21650 4588640 .. 4588666 + -19.6  -2.59035   GATATCTATACAAAA         GCATGAGGCTTC ATT GAAGCCTCATGC         TAAATTAATAATTAT  90 337
JJQ57_RS21665 4592307 .. 4592350 +  -2.1  -2.79796   CAGGCGCCTGACTGA CAGGCCGGGCTGCCACCAC CAGGCC GAGATGGACGCCCTGCATG TATCCTCCGATCGGC  39 26
        toxA 4594484 .. 4594510 + -16.6  -3.29511   GTAACTGCCGCGACC         GGCCGGCTCC CTTCGCA GGAGCCGGCC         TTCTCGGGGCCTGGC  88 37
JJQ57_RS21675 4596242 .. 4596257 +    -6  -3.79113   CACGCGCCGGCCGTT              CCGGCG CCTC CTCCGG               TTGTTCTCGCACGCT  60 45
JJQ57_RS21680 4597683 .. 4597728 +  -2.5  -3.14468   CGGCGTAATGGGTCG GCAGGTAGCCCAGGTGGGTGC CGGCCA GCACG-GCATGGGCGACC-GC TTCCATGTGGTAGGC  42 203
JJQ57_RS21690 NONE
JJQ57_RS21695 NONE
JJQ57_RS21700 4601792 .. 4601804 +  -4.7  -3.54459   CCTGGCGCATGCATG                ACCGC CTG GCGGG                TTTCCCGCCGCTTCC  55 58
JJQ57_RS21705 4602862 .. 4602874 +  -3.3  -2.91274   TTAATTTGTGCATGC                GCCAG GCG CTGGA                TATCGTTGCCGTCAG  42 60
JJQ57_RS21710 4603824 .. 4603843 + -16.4  -4.98531   CAGGCTGAAAGGGAA            CCCGGCGC CATG GCGCCGGG             TTTTTCGTTTGCGGA 100 49
JJQ57_RS21725 4607054 .. 4607081 +  -4.7  -3.53012   TGAGCGCTTGCGCAT        CGCCCGC-CGAC ACAGG GCCGCGCAGGCG        TTTCAGGGCGAAGAA  52 235
        hchA NONE
JJQ57_RS21740 4609302 .. 4609324 +  -4.7   -3.4252   CGTCGAGCCTGACGC           CTCTCCGCG CTGGC CGTGGCGGG           TTATGCTGCCTGCGC  53 29
JJQ57_RS21745 4609898 .. 4609908 +  -4.6  -3.91357   GGCAGCTATCGACGA                 GGGT CTT GCCC                 TTCTTCTCCTTGTAG  61 208
JJQ57_RS21755 NONE
JJQ57_RS21760 4613079 .. 4613089 +  -2.4  -3.54109   AGTAGAACGAATCGC                 CCTC GCT GCGG                 TTCTGCTTCCATTCG  48 144
JJQ57_RS21775 NONE
JJQ57_RS21780 4616545 .. 4616560 +    -6  -3.15861   GCAGGTGAAGGACGT              CGCGGC TGCC GGCGCG               TTCATGCAGGTCGTC  51 454
JJQ57_RS21795 4618967 .. 4618977 +  -6.8  -3.40522   GCCCGCGCCGGGCGC                 TGCG CCA CGCA                 TTATGCTGGAAGCGT  57 56
        yfiR NONE
        tpbB NONE
JJQ57_RS21815 NONE
JJQ57_RS21820 NONE
JJQ57_RS21825 4623957 .. 4623969 +  -7.7  -3.35679   GCTGCGGAGGAACTT                GAACG CCT CGTTC                TTGTGGATCAGGCCC  59 332
JJQ57_RS21835 NONE
JJQ57_RS21840 4627953 .. 4627967 +  -3.4   -4.2558   GCGCTGGCATGCGGA               CGGCCG TAG CGGATG               TTTTCCTCGACGCTG  63 461
JJQ57_RS21850 4629976 .. 4630018 +  -9.1  -4.88407   GCCGGGGACTACGAA GGGGATGGCAGGCCGGCACG CAGA TGTGCCACGCT-CCATCCCC TTTTTCATTGCCTGA 100 54
JJQ57_RS21855 4630377 .. 4630395 +  -5.9  -3.14931   GGATGCGCACCCCGA             GATCGCC CAGCA GGCGCTC             TTCGTGGACGATCCG  51 133
JJQ57_RS21870 4633299 .. 4633323 +  -5.6  -3.14564   GCATCGGCAGGCTCG         C-GGCGTGTGC CGGG GCGCTCGCCAG          TTCATCGAACAGTGC  49 365
JJQ57_RS21880 4635048 .. 4635066 +  -3.1  -2.87468   GGAAAGCCGGATAGG            GCGGCCGT CGCG ACG-CTGC             TATGCTGTGATGGCA  42 83
        roeA 4636464 .. 4636476 + -10.5  -3.33261   GTCGTGCGGGAAGAC                CGGCG CAG CGCCG                TTGTCCGCATTACCA  66 186
JJQ57_RS21890 4637681 .. 4637720 + -10.7   -3.5394   CTCAGGGCGCCTCAG GCC-TGC-CCGCCGGCGAG CAGG CTCGCCAGCCGCGCACGGC  TTTCCGCCAGGCTTT  73 491
JJQ57_RS22080 4676695 .. 4676716 +  -8.7  -4.72007   TCGTTGCAGTACGGA           GCCCACG TCACCCAC CGTGGGC            TTTGTTTTAGTACCC  88 44
        livH NONE
JJQ57_RS22090 NONE
        livG 4679869 .. 4679880 +  -2.2  -2.64155   GCTTATCTGGGGGAA                GCGT GAGC ATGC                 TGAGTTTCGACAAGG  38 20
JJQ57_RS22100 4680615 .. 4680630 + -11.8  -5.60993   CAGCGCCTACGAAAA              CGGCCC TCAC GGGCCG               TTTTTTTATGCCGAG 100 62
JJQ57_RS22120 4686669 .. 4686682 +  -8.1  -3.13403   GCGAACTGCCCGGCT               GCTGG CGGT CCAGC                TCTTCCTCGAGGAAC  54 80
JJQ57_RS22130 4687790 .. 4687806 + -10.8  -3.64703   GGCAAGTGAAGCGAG              GGGCCG CGCGA CGGCCC              TTTCCCTACAAGAGC  73 32
JJQ57_RS22190 4698175 .. 4698188 +  -3.7  -3.28712   GTTGCGCCACCTGTT               CGGCG CTGG CGCCC                TTCTGCGGACCGAAC  47 504
JJQ57_RS22235 4709689 .. 4709711 + -14.8  -2.78384   TCTGAACCGGCGATG           CGCCGGCAGC TGT GCTGCCGGCC           TCTCCTCAGAAGCGC  75 36
JJQ57_RS22255 NONE
JJQ57_RS22260 NONE
JJQ57_RS22265 4712992 .. 4713009 + -10.5  -3.60792   TGCACGCCTGAGATG             CTGCGCC AGGC GGCGCGG              TTTGGGCGTTGACGA  70 30
JJQ57_RS22270 4713754 .. 4713764 +  -8.2  -3.28712   CCCCGATGCCACGGC                 CCGC GAC GCGG                 TTATCCGCCCCACGC  60 89
JJQ57_RS22280 NONE
JJQ57_RS22285 4715411 .. 4715430 +   -15   -4.4078   GCGCCGGCATCCGAA            GGCCCGCT GAGC AGCGGGCC             TTTTCGTTGGCGCGC 100 51
JJQ57_RS22290 NONE
        quiP 4718928 .. 4718947 +   -15  -4.31397   CCATGATCATCTTCA            GGGCGTCC TTCC GGACGCCC             TTCTTTTATCCCCCT 100 94
JJQ57_RS22325 4726402 .. 4726426 +  -2.7  -3.14881   GTCGTTGCCGAAATC          GCTGCGGAAGG TGC CGTTGCGCAAC          TTGATCCCCAGGTTC  43 465
JJQ57_RS22395 4740427 .. 4740442 +  -6.8  -2.73364   CTTGTTCAGGATCAG              TTGCCG GGCC CGGCGA               TAATTCGGGTGAGCC  48 245
JJQ57_RS22575 4768273 .. 4768287 +   -10  -3.87815   GCTTCGGTGGTGACT               TTCGCC AGA GGCGAA               TTTGTCACGATGGAG  76 525
JJQ57_RS22635 4775853 .. 4775868 +  -4.6  -3.67775   TACCATAGGGTCACG              GGGCAG CGAC CTGCAC               TTATTGAGTCGACCT  55 56
JJQ57_RS22640 4777044 .. 4777061 + -14.1  -4.45544   CCTGTGACTCTCTAA             GCCCCGC ACCA GCGGGGC              TTTTCGTTCCTAACC 100 34
JJQ57_RS22645 4778094 .. 4778110 + -10.8  -4.72272   CAGAGACGTTACCAA              GCCCGC CTAGC GCGGGC              TTTTTCATGGGCGCG 100 45
JJQ57_RS22650 NONE
JJQ57_RS22655 NONE
JJQ57_RS22665 4781507 .. 4781518 +  -2.2  -2.52933   ATCGCAAAGTTCTTC                GCTA TCTA TGGC                 CTTAATCGGTTCAAG  37 281
JJQ57_RS22670 NONE
JJQ57_RS22675 4782282 .. 4782300 +  -7.3  -5.08169   ACCCTACCCCTCATT             AGCCCGG CAAGT CCGGGCA             TTTTTTCGCCTGTAT  93 156
JJQ57_RS22680 NONE
JJQ57_RS22685 4783453 .. 4783473 +  -3.1  -3.99374   TTCAGCCGGGCCTTG            GAGCGGTTC TTC GAGCCGAGC            TTCTTCTTGCTAAGC  58 523
JJQ57_RS22695 4784801 .. 4784828 + -11.3  -5.06414   CATCGACCTGACCAA        GGCCGCCAAGA CAACGT TCTTCGCGGCC         TTTTTCTTGGGCAGC 100 48
JJQ57_RS22700 NONE
JJQ57_RS22705 4786161 .. 4786175 +  -8.5  -3.69621   GTGACGCTGCCGAGT               GGCGC CGTAA GCGCC               TTTCCCCTTCTACCT  69 136
JJQ57_RS22710 NONE
JJQ57_RS22715 NONE
JJQ57_RS22720 NONE
         ssb 4788668 .. 4788683 + -10.4  -5.07652   TTACGCGAAATTAAA              GGCCCT ATTG AGGGCC               TTTTCTTTTGCCCGG 100 50
JJQ57_RS22730 4789396 .. 4789408 +  -5.5  -3.45945   CCTACGGACTGCACA                TGCTC TAT GAGCG                TTCGTTATGGCTCGC  55 115
JJQ57_RS22735 NONE
JJQ57_RS22740 4790942 .. 4790962 +  -3.8  -2.87132   AAAGGAGGCGAAGGC            GCGGGCCG AGGAA CTGCGCGC            TCTGTGCGCCGCCGC  44 135
JJQ57_RS22745 NONE
JJQ57_RS22750 4792206 .. 4792221 +  -4.6  -3.62096   GGTTACGACCTTGAG              CGTCGC TGGT GCCACG               TTTGCGATGGTCGCG  55 514
JJQ57_RS22760 NONE
JJQ57_RS22765 NONE
JJQ57_RS22770 NONE
JJQ57_RS22775 NONE
JJQ57_RS22780 4794699 .. 4794723 +  -5.6  -3.28712   GCGAGAACCTCCGAG          GCTGGCCAAG GTCGG CTAGCCCAGC          TTGTCGGCCAGGGCA  52 343
JJQ57_RS22815 NONE
JJQ57_RS22820 4800749 .. 4800764 + -11.8   -5.1971   CGCCCCGAAAAAAAA              GGCCGC ATCC GCGGCC               TTTTTCATTTTTCAT 100 45
JJQ57_RS22835 4803969 .. 4803998 +  -3.3  -3.14051   TTTCCCCGCTGCCCT       CGCGCAGGCAGGC CAGG GTCCGCTCGAGCG        TGTTCATCGCCATCC  44 250
        mvfR 4807101 .. 4807114 +  -5.9  -2.90723   CAATGCCGCCTGGAT               CGTCG GCAA CGGCG                TATCGTTGCGCATCA  48 467
JJQ57_RS22885 4815752 .. 4815766 +  -3.4  -3.70149   CAACCACGGCGCCCC               GGGTCG GCA CGGCCA               TTTGCGTGCTGTCGC  53 404
JJQ57_RS22910 4821492 .. 4821504 +  -4.7  -4.14243   CGAATCCGCGCAGGA                ACGCC AGA GGCGC                TTTTCGACTAGGCTG  65 2
JJQ57_RS22915 4822738 .. 4822750 +  -5.5  -3.21218   CGTTCGACACACCCA                CTCGC AGC GTGAG                TTCGTCGTCCCAGGT  49 310
JJQ57_RS22945 4828402 .. 4828443 + -11.5  -2.66106   CTTCCACTCCACCCT GCAGGGTATGC-CGATACCC GAA GGGGACCGTGCACGCCCTGC TCCGTTCTTCACCTG  62 61
JJQ57_RS22950 4830727 .. 4830746 +  -9.2  -4.34711   GCAGCATGAACTCAT            AGGCCACC TCCG GGTGGCCG             TTTTAGCTTCATTTT  83 32
JJQ57_RS22965 NONE
        mdtN NONE
JJQ57_RS22975 4836529 .. 4836539 +  -2.4  -3.53444   AGTGGTCCACTGATG                 CCGG ATA CCGA                 TTTAGGCAAGAATCC  47 143
JJQ57_RS23025 4847714 .. 4847735 +  -2.4  -4.36262   CGACTCATCCTTTCT           TTATCATG CTGCTT TATGATAA            TTTTCATATGACTCT  62 309
JJQ57_RS23045 NONE
JJQ57_RS23050 4852291 .. 4852302 +  -2.2  -2.90194   AGGAGGTGAACGGCC                GATG GCAA CGTC                 TGTAGTTCGAGCCCT  40 9
JJQ57_RS23055 NONE
JJQ57_RS23060 NONE
JJQ57_RS23065 NONE
        traD NONE
JJQ57_RS23075 NONE
JJQ57_RS23080 4858251 .. 4858263 +  -2.7  -2.70525   ACAGCGGAGCATTGA                GATGA AAC TTATC                CTTGATTTCGACGGA  39 155
JJQ57_RS23085 4859827 .. 4859840 +  -2.3  -2.73994   CCTAGTATTTTCGGT               TGAGG CCCT CCTCC                TGCTCTTGAAACCGT  39 491
JJQ57_RS23095 4860203 .. 4860213 +  -2.4  -3.67877   AAAAAATACCCCGGA                 CCCG CGT CGAG                 TATTTCTTGCGGAAT  49 40
JJQ57_RS23100 NONE
JJQ57_RS23105 NONE
JJQ57_RS23110 NONE
JJQ57_RS23115 NONE
JJQ57_RS23120 NONE
JJQ57_RS23125 NONE
JJQ57_RS23130 NONE
JJQ57_RS23135 NONE
JJQ57_RS23140 4866200 .. 4866216 +  -2.2  -3.23899   TACGTAAGTCGACCC              GCTTGA GCCGG TCACGC              TTGCATTCATTAACC  43 20
JJQ57_RS23145 NONE
JJQ57_RS23150 NONE
JJQ57_RS23155 4870518 .. 4870536 +  -8.8  -2.52464   CTTGCGGCCGGAGCT             GGTGAGGC TAA GCCTCAAC             TCCATTGCCGGCCGA  51 172
JJQ57_RS23185 4877429 .. 4877447 +  -3.2  -3.98378   GATTGGAATGCTTAT             TAAAATTC TTC GAATTATA             TTCTTGTTGCCTATA  58 191
JJQ57_RS23190 NONE
JJQ57_RS23195 4880863 .. 4880891 +  -7.4  -3.21099   CAGTCATCCAGAACG       CGACCGGC-GCGGT CAT GTCGCTGCCGG-CG       TTGATCATCCAGCGC  56 347
JJQ57_RS23260 4897225 .. 4897241 +  -2.2   -3.1855   GATTCCGCCGCGGCG              GCCCTT CCCCC AAAGGC              TTCACTCTTCAACGG  43 136
JJQ57_RS23265 NONE
        mupP 4898664 .. 4898685 + -11.5  -2.52795   GCCGCCGACAGACAA           CGACCCGCC GCCA GGCGGGTCA            TGCATTCAAAGGATT  62 49
JJQ57_RS23275 4899451 .. 4899480 + -19.3  -2.93991   CGCCCAGTGATTCCC       CGGCAGCCTCGCC GCCC GGCGAGGCTGCCC        TGTCCTTCCCTTCCC  91 31
JJQ57_RS23280 NONE
JJQ57_RS23285 NONE
        gltS 4902543 .. 4902569 + -15.9  -3.53012   TTCAGTTGAACCATG        GC-GGCGCTCCG CTAG CGGAGCGCCAGC         TTTCCGACGAGCGCC  85 32
JJQ57_RS23295 4903851 .. 4903868 +  -6.9  -3.92625   AGCGGATGCGTTTCT             CCAGCAG CCAG CCGCTGG              TTTCCTTGCCGTCTC  66 188
JJQ57_RS23310 4906466 .. 4906496 +  -4.5  -4.07568   CAACTCGTCAGTGCA       TCCCGGGGTGACC ACGAA GCTCGCCCCGGCC       TTTTCCGCAGCGGCG  62 484
JJQ57_RS23330 4910163 .. 4910173 +  -2.4   -3.8211   GCCAGATCACGCTGC                 CGGC GCT GACG                 TTCTTGTCGATCCGC  54 195
         gap 4923798 .. 4923826 + -12.4  -2.52464   GCGTTCCCCCTTTTT       CG-GCGCGGACCG CAAC CGGTCCTCGCCCG        TCACTTCACGACAGG  65 230
JJQ57_RS23425 NONE
JJQ57_RS23430 4929197 .. 4929243 +  -5.7  -4.07568   AGTCCTGCCCTGAGG CAGTCGCCGGGTACCGGCGGCCG GCC CGGTCGCCC-T-CCCGGCAAACG TTTTCGCACCGGACG  65 28
JJQ57_RS23435 NONE
JJQ57_RS23440 4930420 .. 4930430 +  -2.4  -2.83403   CGGCTACTACTACAG                 CCAC TGA GCGG                 GTTTCGTCAGCCCGC  40 19
JJQ57_RS23445 4931007 .. 4931031 + -17.9  -3.01712   CTGACGTCCGAGCCA          CCGCTACCGGG TCC TCCGGTAGCGG          TCTTCCGACCAGCCG  90 37
JJQ57_RS23450 4932487 .. 4932503 +  -2.1  -2.73203   TCCCCCAGGAGCATC              CGGCATG ACT CTTCCCG              CTTCGTTGTTCCTCG  39 65
JJQ57_RS23455 4933146 .. 4933181 +  -3.7  -3.15544   GGCATAGGCGCCCAG    CACCAGGCCGTGGGC AGCGCA GCCGGCGGCCAGCAG     TTGCTCGCCGTACGG  45 204
JJQ57_RS23470 NONE
JJQ57_RS23475 NONE
JJQ57_RS23480 NONE
JJQ57_RS23485 NONE
JJQ57_RS23490 4939156 .. 4939181 + -11.7  -3.24329   GGCCTGGCGACTAAC         CCAGGCGCTCC TGGC GGCGCGCCCGG          TATTCGTTGGGCGTG  70 53
JJQ57_RS23500 4940656 .. 4940695 +  -5.7  -3.75665   GGCCGCCCGGGCCGG TCGCTCCG--CCGGGA-CGA CCG TCGGTCCCGGATCGGTGCGC TTTCCTGAACTATCG  60 57
JJQ57_RS23505 4942636 .. 4942660 +    -2  -3.33744   TGCTCCAGCGCCGCC         CGCT-GCGGGC CGTC GCCCACCAGCC          ATTTTTCGCCCGGCA  44 427
JJQ57_RS23520 NONE
JJQ57_RS23525 NONE
JJQ57_RS23530 4946663 .. 4946673 +  -5.4  -2.54896   AAATAGCCACGTCGG                 GTTC GTC GAAC                 TGCATTCCATCGCCG  44 386
JJQ57_RS23540 4948012 .. 4948029 +  -7.7  -2.53263   GCGCCGATGAATCAC             CG-GCGCA CCC TGCGCGCG             TCGCTTGAACCTGCA  50 46
JJQ57_RS23545 4948770 .. 4948780 +  -2.4  -3.72893   TCGCAGCCGACGTCA                 GCCC CCT GGAC                 TTTCCTGAACGCGTC  52 111
JJQ57_RS23555 NONE
JJQ57_RS23560 4951319 .. 4951333 +  -3.4  -3.86015   CAGCATCCGCTCGCG               GGCTCG CGC CAGGCC               TTTCTCACGGAACTC  56 349
JJQ57_RS23575 NONE
JJQ57_RS23580 NONE
JJQ57_RS23585 4954856 .. 4954879 +  -5.9  -3.14132   TCCTGTCCGCCAAAC          GCCTCTGAG TCCAGC CGCAGGGGC           TTGATCCGGCGGGCC  51 18
JJQ57_RS23590 4956768 .. 4956794 + -16.5  -3.08471   GACTGAAGCCTCGGC         ACCGGGCGGCG GCTCG CGCCGCCCGGC         TTGGGTGACCTTGTC  84 35
JJQ57_RS23595 4957309 .. 4957321 +  -4.7  -2.90075   CAGCAACGGCTGAGC                GGACG CCA CGCCC                TATCGTTCCGGCCCC  46 28
JJQ57_RS23635 NONE
JJQ57_RS23640 NONE
JJQ57_RS23645 4967391 .. 4967409 +  -9.5  -4.73614   GAGTGAGACGAAGAA             CCGTCGC CCTGT GCGGCGG             TTTCTTTTCCTCATA  93 35
JJQ57_RS23655 4969356 .. 4969383 +    -2  -5.06414   TTCAGAAGTGTAGTG        GTCAACCCAT CCCGGACA GTGGGTTGAG         TTTTTCTTCGGCCAC  77 28
JJQ57_RS23665 4971063 .. 4971075 +  -9.1  -3.32521   CTCTTGTTTGCCAAT                GGCTG TCT CAGCC                TTCTCCGGCTCTACT  63 93
JJQ57_RS23670 4971741 .. 4971754 +  -5.3  -3.21354   ATGGCCGTCAAAACT               CGTAA CCCT TTACG                TTCCTACCTATGTCA  48 21
JJQ57_RS23675 4972411 .. 4972422 +  -3.6  -4.63542   CCGATATCAATCGTG                TGCC TATT GGCG                 TTTTTCGCCGTTCTA  69 235
JJQ57_RS23680 NONE
JJQ57_RS23685 NONE
JJQ57_RS23690 NONE
JJQ57_RS23695 4975230 .. 4975259 +  -7.9   -3.6682   TCCGAGACGGTGTTA       GCACCTTG-GGGTT CTA AACCCTTAAGGAGC       TTTAAATGCGTAAAG  62 494
JJQ57_RS23700 4975966 .. 4975983 +  -6.9  -3.77136   GATCCAAGAAACTAT             TGCCCAG CTTA CCGGGCA              TTTGAAGTTTGTTGT  62 58
JJQ57_RS23710 4979813 .. 4979841 +  -5.3  -3.05596   AGCTTGAGAGACAGC        TTCTTTCCGGA GGCATGA TCCGGGATGAA        TTCAATAAGCGGCTA  47 325
JJQ57_RS23715 NONE
JJQ57_RS23720 NONE
JJQ57_RS23725 4982531 .. 4982545 +  -7.1  -3.29829   AAACTCTTCTCTACG               GGCCT AATAG AGGCC               TTGTAGAGCACTCTC  55 123
JJQ57_RS23730 4985668 .. 4985683 +  -4.6  -3.48276   TAAGCTTAGTCCCAC              TAGGGC TTGA GCCCGA               TTGTGTAAGCAGAAA  53 120
JJQ57_RS23735 4986782 .. 4986794 +  -2.7  -4.56597   CAAGCGCTCTCCACT                TAGTG TGC CATTA                TTTTTCCGGAGGAAA  68 204
        minC NONE
        minD NONE
        minE 4993692 .. 4993716 + -22.9  -2.90496   CGCCCAGGGTCCATA          CTGCGGCGGCC ATT GGCCGCCGCAG          TCGTTTCACCGAGCC 100 43
JJQ57_RS23770 4994418 .. 4994457 +  -4.9  -3.60098   CGCCGTTCTGAGCCT TC-CCCGCCG-CGTCCCGG CCCG CCGGGACGCCGCCCGCCGA  TTTCCGGTACCCCGT  55 30
JJQ57_RS23775 4996024 .. 4996055 +  -9.4  -3.35679   CGTCGCGCCGGAAGC      CCTG-GCGCTCAGCG GCG CGCTGGCTGCGCAGG      TTCTCGGTGGAACAG  63 178
JJQ57_RS23790 NONE
JJQ57_RS23795 NONE
JJQ57_RS23800 NONE
JJQ57_RS23805 NONE
JJQ57_RS23810 NONE
JJQ57_RS23815 5002817 .. 5002833 +  -9.4  -3.65902   AGGCTCGCCGCGAAA              GCGCGA GCGGA TCGCGC              TTTCCATCGCCTCGA  68 42
JJQ57_RS23825 NONE
JJQ57_RS23830 5008104 .. 5008131 +    -4  -3.59979   GGCTGTCGCCCTTGA        GC-GCCTGCACGC CGA GCTGGTAGGCCGC        TTTCCCATCACCCGC  51 230
JJQ57_RS23850 5010371 .. 5010397 + -11.7  -3.28712   CGCCGAGGCTCTCCG         GGTTATCCACG CATAC TGTGGATAACC         TTGTGAACAGCCCCC  72 485
        rdgC NONE
JJQ57_RS23880 NONE
        sugE 5014505 .. 5014521 +  -2.9  -3.06183   TTTATCGCGTACTCT              GCGACCA CTG TGCTTGC              TTGGGTCACAGTGAA  43 83
JJQ57_RS23890 5014892 .. 5014910 + -17.4  -5.04601   AGTTCGCCAAAAAAA             GCCCCGGC ATC GCCGGGGC             TTTTTCGTTTCTGCG 100 46
JJQ57_RS23915 NONE
JJQ57_RS23930 5030062 .. 5030076 +    -7  -3.01712   TGAGCAGGCCGGGCA               GCACCC AGA GGGCGC               TCTTGCCCAGCCGCA  51 331
JJQ57_RS24000 5041471 .. 5041505 +  -5.6  -2.70932   AGCCTCAATCCGCCA     GCACCTCGGCCAGG CTGACGA CCTGGCCGAAATGA     TGCTTCCACAGGCGC  46 40
JJQ57_RS24010 5042816 .. 5042837 +  -5.7  -3.28712   GACCTTGTCGCCAGG           CTCGCGGGT GAAG GCCCGCAGG            TTGTCCAGCGCCGCC  51 385
        phoA 5051964 .. 5051989 + -21.9  -4.98531   GACCAGAACGAAAAA         GGCGCGCCGGT TTCG ACCGGCGCGCC          TTTTTCATTTCGCGC 100 44
JJQ57_RS24075 NONE
JJQ57_RS24080 5061760 .. 5061781 + -10.1  -2.79327   CTGGCCGAACTGCCA           CCGATCAGC ATCG GCTGAGCGG            CTTTCCCTACCGTCG  60 8
JJQ57_RS24085 5063469 .. 5063485 + -10.1  -3.07994   TTGGTCACCTGGCCG              TTGCGCG CAG CGCGCAG              TTCGCTGCGCTTGAG  62 391
        rapA 5070960 .. 5070986 + -16.7  -4.17878   GGCTGCGCGAAACGA         GAAGCCATGGG CCTCC CCCATGGCTTC         TTTCATTTCATTTCC 100 52
JJQ57_RS24125 5071691 .. 5071716 + -18.3  -5.63517   AAAGCCGACGAAAAA         GGCCGTGGGGG GAAT CCTCCACGGCC          TTTTTTCTTTCAGCC 100 45
JJQ57_RS24135 5075996 .. 5076030 + -18.5  -3.14132   TGCAGACGCATCAAC     TGCGCGGCCAACCCG CTCAT CGGGGTGGCCGCGCC     TTGCTCGCGGGACAG  90 114
JJQ57_RS24145 NONE
JJQ57_RS24150 NONE
JJQ57_RS24155 5079429 .. 5079452 +  -4.4  -2.62616   CTGCGCGGGAGGCTG          GCATGAGCCG GACC TGGCGCCTGC           TGCTCTGGCCGCTGC  41 20
        phnE 5080207 .. 5080218 +  -7.2  -2.52543   CAGCCAATAGGAAAA                CGCG CCGC CGCG                 TCCGTTCGAGGAAAT  50 31
JJQ57_RS24165 NONE
JJQ57_RS24170 5081867 .. 5081890 +  -2.2  -3.51329   GGCACGTTGACGGTA          CGCCGCTCGC CCTG GCGATAGACG           TTGTCCTTGACCGTC  48 273
JJQ57_RS24185 5085823 .. 5085839 + -13.7  -3.35679   CGTCGAACAGCAGCA              GGCCCAG CGC CTGGGCC              TTGTCGATCACCCGG  77 404
JJQ57_RS24195 NONE
JJQ57_RS24200 NONE
JJQ57_RS24205 5090147 .. 5090182 + -15.5  -2.66602   CACTGGAAATACCGG    CAAGCGCCGCGGAAG CTGGAA CTTTCCCGGCGCTTG     TCCATTGTTACGTCA  77 49
JJQ57_RS24215 NONE
JJQ57_RS24220 5099943 .. 5099953 +  -8.2  -3.18582   ACGAGTCGTAGAACA                 GGCC TCA GGCC                 TTCATCGCTGCCATC  58 195
JJQ57_RS24235 NONE
JJQ57_RS24240 5104170 .. 5104200 +  -3.3  -2.87564   GGCATTCCCGAGGCC      GACCACGCCACGCTA AGA TGACG-GGC-TGGTC      TGTATGACACAGTCC  42 10
JJQ57_RS24245 5105251 .. 5105289 + -15.8  -3.02829   TGGTATCGGCATGGG   CGGCCTTGCGCGCGGCCA GCT TGGCCGCGCGGTTGGCGG   TGTTGGCCGCCTGTC  77 336
JJQ57_RS24265 NONE
JJQ57_RS24270 NONE
        pfeA 5115855 .. 5115865 +  -3.2  -3.30124   CCTTCTATACCAGCC                 TGAC CGC GTCG                 TTCTGAGCCATAACG  46 9
        pfeE 5116969 .. 5116998 +    -5   -4.4648   ACTGCAACCCTCTGC       GGCGTTGGGA-AG AGGAG CTATCCCGAAGCC       TTTTGTCCTCGCGAT  71 189
JJQ57_RS24285 5118360 .. 5118379 +  -4.9  -2.57294   GCGCGGTCCGCCGCC            GGCGGGT AGATCC ACACGCC             ATTGATCTCGGTCTT  42 121
JJQ57_RS24295 5120356 .. 5120378 +  -2.5  -3.92373   AAACACCATTGTCGA           CTGCGGTGC TAATC GCGCCGGCG           TTTCTCCCTACCCTA  54 84
JJQ57_RS24300 5121260 .. 5121280 +    -9  -3.14132   GAACTCCACCAGCGT           C-GGACCGG CGAG CCGGTCCAG            TTCGTCGCGCGCCGG  59 317
JJQ57_RS24330 5127152 .. 5127187 +  -3.3  -4.12188   TCGCTTTCTGACGTA   C-CCGGGCG-GGC CCTTCGCGGCCC GCCTCGCCCGGAG    TTTTCCCGATGATCC  61 30
JJQ57_RS24335 NONE
JJQ57_RS24340 5130119 .. 5130146 +  -8.2  -3.44051   GGCGACGGTCGTCGC        CTGCCCCTGGCG GATC CGCCCGCGGCTG         TTATCCTGCTCGGCG  63 49
        tse2 NONE
JJQ57_RS24350 5130962 .. 5130979 + -14.1  -2.70932   GACCCGGTGTCCTGA             CGGCCCG TGGG CGGGCCG              TCGTTGGCCCGCCCG  72 26
        cysK NONE
JJQ57_RS24385 5138076 .. 5138107 + -13.6  -2.78384   GCCGGCGCCCCCTGA      GCGCCGGCGGCGAA CTAG TCCGTCGCCGACGC       TGTCGTCAGCCGACA  72 163
JJQ57_RS24390 5139236 .. 5139264 + -17.4  -4.07687   GCAAGTGAAGCCCGG        CGCCGGCCCGGT TTGTC GCCGGGCTGGCG        TTTTAGCGCAAGGCT 100 33
JJQ57_RS24395 5140678 .. 5140688 +  -8.2  -3.31792   TCGGCCGGAACTTGT                 GGCC ACA GGCC                 TTGTGCACGTACTCC  58 192
JJQ57_RS24405 NONE
JJQ57_RS24410 NONE
JJQ57_RS24425 NONE
JJQ57_RS24430 5148035 .. 5148080 +  -6.7  -3.28712   ACCCTGCGAATCCTG CCAGTCGAGAGCGGCCAGGT TCTGCAT GCC-GGCCTCCCACGGCTGG TTGTCGAACAGCGCC  54 291
JJQ57_RS24450 NONE
JJQ57_RS24455 NONE
JJQ57_RS24460 NONE
JJQ57_RS24465 NONE
JJQ57_RS24470 NONE
JJQ57_RS24475 NONE
JJQ57_RS24480 NONE
JJQ57_RS24485 5162813 .. 5162825 +  -3.3  -4.59342   GCCTTCTAGGCAGTG                GAGCC AAT GTCTC                TTTGTTTATAGTAGG  69 65
JJQ57_RS24490 5164172 .. 5164191 +  -4.2  -3.75153   ATATCGAAGCCTACT            GGCCGC TCGACATC GTGGCC             TTTGCGTTACAGCCG  56 226
JJQ57_RS24495 5164982 .. 5164992 +  -2.6  -3.15354   AGTAGAGCGGCCAGA                 TATT CCG AATA                 TATTGAATTGGACTA  43 187
JJQ57_RS24500 5166292 .. 5166303 +  -2.2  -3.56161   GTACTAAAACTGGGG                GCAGG TCA CC-GC                TTGTATCGTAGCTTG  49 47
JJQ57_RS24525 5174211 .. 5174238 +    -2  -5.06414   AGTCCTTGTGTAGTG        GTCAACCCAT CCCGGACA GTGGGTTGAG         TTTTTCTTCGGCCAC  77 198
JJQ57_RS24625 5199186 .. 5199206 +  -2.3  -3.54741   CCTGGCTCTGGTCGG            CGCCGGCCC CGA GTGACCGCG            TTTCAGACCATGGTC  49 10
JJQ57_RS24630 5199660 .. 5199673 +  -8.1  -3.17075   AGCGCCGAACGGGCA               GGCCA GCCC TGGCC                TTCCCTTCCGACACG  58 223
JJQ57_RS24670 5203215 .. 5203232 +  -2.6  -3.05596   CCCTCAAAACGCTCG             CTGCAC CATGAT GAGCAG              TTCGCTACGGAGCTG  41 15
JJQ57_RS24675 5204679 .. 5204690 +  -3.6  -3.56092   TCATGATTCCATACC                CGGC CGGC GTCG                 TTTGGAACGTAATCG  51 79
JJQ57_RS24680 5205079 .. 5205093 +  -3.4    -3.484   CAAATTAGGGGTAAG               CGCGCG ACT TGCCCG               TTCTGGTCTCGTAGA  49 86
JJQ57_RS24685 5206053 .. 5206070 +  -6.9   -3.4072   TACCTTACGATGAGC             TGCCCGC GCAT GGGGGCA              TTGTCGTCAACGATC  57 50
JJQ57_RS24705 NONE
JJQ57_RS24710 NONE
JJQ57_RS24715 NONE
JJQ57_RS24720 NONE
JJQ57_RS24725 NONE
JJQ57_RS24730 5216403 .. 5216440 +  -7.6  -3.05384   GTCGCTTCTCTGCCA   GGCGAAG-GCGGTGCCG GGACA CGGGAACGCGCATCGCC   TTCGATCAACCAACA  54 63
JJQ57_RS24735 5217258 .. 5217291 + -10.2  -3.24188   TCGTGCATTCATCGC     GCG-GCCACGGCACG GGCAG CTCGCCGTGGCTCGC     TTCATCGTCGTCTGA  64 48
JJQ57_RS24740 5218952 .. 5218966 +  -2.7  -3.71284   CAGTGGTAGGCCACC               GAGGC CATCC GCCCC               TTGTGTTCCTCGCGC  53 484
        plpD 5222397 .. 5222445 + -10.8  -3.29461   CGCCAGGGGCTCCTC CTCCG-CCGGTTCCGCCTTGCCG GCAG CGGCGCGGCGCGGCAGGTCGGGG TTGTCCAGGGGATTC  66 285
        flgA 5235096 .. 5235130 +  -2.7  -4.05033   ATATGTAGAGGGAAA    GCCGTGGCCGGTAGCG CTGG CGCTACCC-CGGCGGG     TTTCTCTAAACTGGG  57 33
        flgM NONE
        flgN NONE
JJQ57_RS24825 5237382 .. 5237425 +   -11  -2.78816   ACCGCGATCGGGCAG GCGCAGGGCGCGTTCCAGC AATACCC GCTGCAA-GCGTCCCGCGC TCTCCTCGCCGATGG  60 506
        dsdA NONE
JJQ57_RS24850 5243376 .. 5243412 +  -6.4  -2.70932   CAGGGTCGCCACCGT   GGCCCCGAG-CAGCGTC TCGT GGCGCCGGCTGGGGGCG    TCCTTGGCCGGCGCC  47 507
JJQ57_RS24865 5246253 .. 5246280 +  -3.4  -3.55181   ATCGTAGTAGGTCGT        GATGTCCGC-AAG CGT CTTCGCGGAAACC        TTGTCGTTCGGTTTC  49 474
JJQ57_RS24895 5252055 .. 5252073 + -11.7  -3.45054   ATCGCGGAGGAAAAA             GCCCAGC GTAGG GCTGGGC             TTATACCTTCTGGAA  74 420
JJQ57_RS24905 5254089 .. 5254104 + -10.4  -2.87344   TGGTCCCTCCTGATC              GGCGGA AAAT TCCGCC               TATCTCCAGCACCTC  61 189
JJQ57_RS24915 5255261 .. 5255288 +  -2.1  -2.71731   TGGGCTGACCTCATC        AT-GCATTTTGC AACCG GCAAAATGCCAA        TCCTTGCAAAGTGCA  39 33
JJQ57_RS24920 NONE
JJQ57_RS24925 NONE
JJQ57_RS24930 5256229 .. 5256244 +  -6.1  -2.63631   TGCCGGGCGCTACAG              CGGCA GGCACA TGCCG               TCGTGTGCCAGTTCC  46 58
        amrZ 5267567 .. 5267582 + -11.8  -5.38958   GTAGCGCTTGAAATG              GCCGGC ATTC GCCGGC               TTTTTCTTTATGGAT 100 57
JJQ57_RS25005 NONE
        rhlG 5268971 .. 5268987 +  -2.1  -3.89524   CCGCTCGCCTCGTCC              CGCCATG ACC CACAGCG              TTTCTCCCATCGGCT  54 74
        tsaA 5269694 .. 5269708 +  -2.7  -3.55801   AGCGCAGCGGATTGA               GCGCC AGCGC GTCGC               TTTCGAAGACTTCCT  49 49
JJQ57_RS25025 5270629 .. 5270643 +    -7  -2.92111   GCCAGGCGCAGACCC               CACCGC AGC GCGGCG               TCCCTTTTTTCGCCG  50 201
JJQ57_RS25030 NONE
JJQ57_RS25035 NONE
JJQ57_RS25040 NONE
JJQ57_RS25045 NONE
JJQ57_RS25050 NONE
JJQ57_RS25055 5278369 .. 5278394 + -17.6   -4.1822   GCCGGAAAGCAGAAA         GCCCCTGCCG CGGATA CGGCAGGGGC          TTTCTTCGCCTGGCG 100 47
JJQ57_RS25065 5280876 .. 5280909 +   -16  -2.52464   AGCAACGCATAGGTG     GCGGCCATGCCCAG CAGCAC CAGGGCATGGTCGC      TGACTTCGCGCAGCG  73 495
JJQ57_RS25095 5285582 .. 5285598 +  -8.7  -3.58864   GGCTGAGACGCAGGC              CGACACT GTC GGTGTCG              TATTTCTGCTCGTAG  62 467
JJQ57_RS25145 NONE
JJQ57_RS25150 5296748 .. 5296766 + -11.6  -2.57132   CTCGCCAGCCTGCGA             CGCCGCTG AGT CCGCGGCG             CTTGTCCGACCCGCG  65 17
JJQ57_RS25155 5297490 .. 5297502 +  -3.3  -2.71712   GTTGGATAGGGTCAG                GGTCG CGC CGAGC                ATTTCCGCCGGCGGG  40 269
JJQ57_RS25180 5302746 .. 5302769 +  -5.2  -3.14132   GCCACCGCCTGGGTC          CGGCGGGC CACCCCGA GCTTGCCG           TTGATCCGCCGGGCG  49 78
JJQ57_RS25200 5309560 .. 5309584 +  -4.1  -2.50988   AGATTTCCCAGCGGA          CCCGCGCGC ACGACAG GCGCACGGC          ATCTTCCTACTCTCG  41 40
JJQ57_RS25205 NONE
JJQ57_RS25210 5311428 .. 5311471 +  -6.5  -2.71364   CACCGCTAGCCCGGG CGGCGCGACGGCGTCACTCG AAGCG CCCGTGGCGCCC-CTCGCCG TCCTTGAAGCGCTGC  49 32
JJQ57_RS25250 5317721 .. 5317771 + -21.2  -2.72991   TTATCCGCCGCCTGG GCAGGCGTTTCGGCGGATAACGCC TGG GGCGTTATTCGCCCTACCGCTTGC TCCTTCCCCGTGTAG  91 147
JJQ57_RS25260 5319122 .. 5319171 +  -6.4  -3.54543   CAGCCTGCCGGAAGC GCACTGACGGCTTGCCGCCCACCCC GGC GGGGTGGGCCGTA-GC-GCAAG-GC TTTGCCCGACTGGCT  59 19
        folM NONE
        folE NONE
        folX NONE
JJQ57_RS25280 5321364 .. 5321380 +  -2.1  -3.65351   TTGCCAACCCTGCCC              CAGACAC CAT GAGCCTG              TTTCGATGACCCTGA  49 55
JJQ57_RS25285 5321845 .. 5321870 + -18.3  -2.57132   TACGCGACGAAAAAA         GGCGGGG-CCCC CTC GGGGTCCCCGCC         CTTCTCGGCGCCGCA  86 146
JJQ57_RS25340 5330899 .. 5330910 +  -5.8  -3.36919   TACCTGCCACGTCGT                GCGT ATCC ACGC                 TTCTCCACGTTTTCT  52 189
JJQ57_RS25345 5332538 .. 5332555 + -14.1  -5.15969   CGCGCGCATGAAAAA             GCCCGGC AATA GCCGGGC              TTTTTTGGGTTGGCG 100 54
JJQ57_RS25350 5333762 .. 5333775 +  -5.2  -5.72616   GGAAAGGCGGACATA               CCGC CTAAGC GCGG                TTTTTTTGTGTCCGT 100 111
JJQ57_RS25355 NONE
JJQ57_RS25360 5335003 .. 5335031 + -14.6  -5.50499   GCGCTTCCTTTAAGA        CACCTGGCCGAC CCAAA GTCGCCCAGGTG        TTTTTTTGGCTATGG 100 48
JJQ57_RS25365 NONE
JJQ57_RS25370 NONE
JJQ57_RS25375 5337521 .. 5337559 + -11.6  -3.36878   CAGCTCGGCGATCCG  CGCTTCCGCATCGGCCG ACAGAG CGGCCGGCGCGGC-GCG   TTCTGGGTCGCTGCC  70 349
        mnmC NONE
JJQ57_RS25405 5344130 .. 5344140 +  -8.2  -3.30124   TGGGTCGGCGGATAA                 CGCC GAC GGCG                 TTATCCGCCCTACGC  60 124
JJQ57_RS25415 NONE
         ngg 5348433 .. 5348446 +  -3.8  -2.56596   CGATCTTCTCTTCCC               CCTC AGCCGC GAGG                TGCCTTCATGACCCC  41 1
JJQ57_RS25425 5349656 .. 5349687 + -17.2  -2.62184   CAAGGACTGAACCCG      CGCCGGCCTCCCCG CCTC CGGGGAGGCCGCCC       TCCTCTCCAGCCAAC  83 31
JJQ57_RS25430 NONE
JJQ57_RS25435 5353293 .. 5353305 +  -7.7  -3.51934   GAGCAGTTGGCGCAG                CCAGT CGA ACTGG                TATTTCTCCACCGCG  60 494
JJQ57_RS25445 5356233 .. 5356243 +  -8.2  -3.30124   CCTCGGGGCGGACAG                 CGCC AGC GGCG                 TTATCCGCAATCCAA  60 59
JJQ57_RS25455 5359214 .. 5359229 +    -6  -3.32516   CGGGGATGCGATCCG              GCGCCC GATG GGGCAC               TCTTGGTTCCTTTGT  52 76
JJQ57_RS25460 NONE
JJQ57_RS25465 NONE
JJQ57_RS25470 5361700 .. 5361717 + -12.7  -4.21936   ACCGTCAACGAAAAA             GGCCACC TCGG GGTGGCC              TTTTCGCGTTCTCGC  89 52
JJQ57_RS25480 NONE
JJQ57_RS25535 5380415 .. 5380435 +  -3.3  -4.36914   GCGCCGCTGAGAGGG           C-TTGGCC ACGACC GGCCAACG            TTTTCTCGCAGACCA  64 116
JJQ57_RS25540 5382986 .. 5382996 +  -2.4  -3.53444   AGTGGTCTACTGATC                 CCGG ACA CCGA                 TTTAGGCGAAAATCC  47 216
JJQ57_RS25545 NONE
JJQ57_RS25550 NONE
JJQ57_RS25555 5385905 .. 5385920 +  -4.7  -3.65353   CGCTCCATGAATCGT              CATGG AGCTTC CCATG               TTTCAACTCCTTTCC  55 261
JJQ57_RS25560 NONE
JJQ57_RS25565 5389354 .. 5389373 +  -9.2  -3.15503   CTTAGAAACAGAAAA            GCCCACCT AAAA AGGCGGGC             TATTCCATATTGACA  61 262
JJQ57_RS25645 5402610 .. 5402623 +  -9.5  -3.22858   CGTCCTTCTGGTCAC               GGGCG TCGC CGCCC                TATTGCTGTCCTTCA  61 265
JJQ57_RS25665 NONE
JJQ57_RS25670 5405407 .. 5405436 + -15.1  -4.57073   CCATTATTGAATGCA       CAAAAAACCCGCC GTTC GGCGGGTTTTCTG        TTTTTCGCGGCGGTC 100 31
JJQ57_RS25680 5406462 .. 5406507 +  -2.3  -4.19238   AACTTTGCAACAGTG CCGGGTCG-GCAGGACCGACTC CAT GAAACGGTTGGCCTCGGCCCGG TTTTCCGCTTCCACG  59 76
JJQ57_RS25700 5412774 .. 5412805 +  -2.8  -3.53444   CCGTTCGGCCGGCAA      GCCGAGTTGCGCCAG GCG CGTGCGCAGC-CAGC      TTTCGCCGCGACTGC  49 279
JJQ57_RS25710 5414722 .. 5414740 +  -6.6  -3.08464   CGCGGCGCCTCCAGT             TCGTCGAG CGC CGCGGCGA             TTGCCTCGATGGTCG  51 113
        bdlA 5417147 .. 5417165 +  -6.7  -3.15544   CTGTTCGCGGTACAG            CGG-CTGG TAGA CCAGTCCG             TTCATGCGACTGGAA  52 422
        speB NONE
JJQ57_RS25735 NONE
JJQ57_RS25740 NONE
JJQ57_RS25745 5422283 .. 5422303 + -16.9  -4.27316   GGCACAACCCCGACA            GGCGAGGGA CTT TCCCTCGCC            TTTTCCATTCCCGAG 100 45
JJQ57_RS25750 NONE
JJQ57_RS25755 5425339 .. 5425359 +  -6.1  -3.53012   GGTCATACCCTGAAC            GCCTATCCT TCT GGGATAGCC            TTTCCACCGACAGAG  55 28
JJQ57_RS25760 5426173 .. 5426211 +  -9.5  -4.07885   GGGGAACCGGCTCAG  CGACGTTGCCGCG-CGGCG AGG CGCCGGCGTTGCT-CGTCG  TTTTCCACCGGGATG  76 89
JJQ57_RS25770 NONE
JJQ57_RS25790 5434501 .. 5434540 +  -3.6  -4.56597   CCCGATTGAAGCGAA GGTGCGGA--CTGTCCGT CACGCA ACGGGTAGAATCCGCCCC  TTTTTCAACGCCGAA  69 32
JJQ57_RS25795 5435529 .. 5435555 +  -3.7  -3.15544   GCGGCGTGTCGCTAG        GCTGTC-GGCAT GGAC ATGCCCGAGGGC         TTCATCCCCCTGCCG  47 52
JJQ57_RS25800 5436404 .. 5436416 +  -4.7  -3.79747   GTGATCGCCACGTAG                GCCAG GCG CAGGC                TTTCGTCCTCCATGG  58 133
JJQ57_RS25810 5438667 .. 5438680 +  -9.5  -2.52676   TGATCCCTCCCGCGA               CCGGC AGGC GCCGG                TCGCTTCCGCCGATA  56 38
JJQ57_RS25820 5440197 .. 5440209 +  -4.7  -2.85078   AAGCCTAGCGACTGA                CGGCG TCT CGCGG                GTTTGCTAGGGTCTG  46 40
JJQ57_RS25825 5441114 .. 5441127 +  -3.1  -3.91506   ACATCCGCGAGACGT               GGCGCA CCG TG-GCC               TGTTTTTCCGCCTCC  58 475
JJQ57_RS25835 5445094 .. 5445146 +  -9.8  -2.57344   CGGAGTTGGCGACGC GCCTGCGCTGAGCGCGGGCGCTGC GACTAGG GCTTCGCC-GC-CTTGGCGCGGGC CTTCTGCAGCCACTG  59 15
JJQ57_RS25850 5448211 .. 5448265 +  -4.2  -3.14132   ACTGCATCACCACCT GCGA--GCCGTCGGCGGTGCGCTCCA TGTTC TGCGGCGTACCGAAGAAGGCTATCGC TTCCTCGGCGGAACG  45 294
JJQ57_RS25870 5450959 .. 5450969 +  -8.2  -3.30124   CGAACCGGCGGATAA                 CCGC ACT GCGG                 TTATCCGCCCTACGC  60 95
        aceK 5454382 .. 5454422 + -16.9  -3.28712   CGTCCAGCGCCACTT CCAGG-TCGGCGCCGCCT TCGAGC AGGCGGCGCAGGGCCTGG  TTGTCGACCACCGCG  86 521
        fabF 5457163 .. 5457216 + -14.6  -2.64794   GGCGTTGGGTGTAGG GTGGGCGACCCCTCTGCCAGTCGTTC CTGA GCACG-CTGGCGGAGGGGAAGC-CAC TCATGTCGCATTGCC  74 27
JJQ57_RS25910 5460009 .. 5460023 +  -3.5  -3.79519   TGACCGGTATCAATA               TGAGC AAGCC GCTCG               TTTAGTAGTGAGGTT  54 6
JJQ57_RS25925 5463897 .. 5463933 +  -6.6  -4.09963   GTGCGTATAGCTCGC   CGTCAG-CACCGTGCCCG GCG CCGGCA-GGTGGCTGGTG   TTGTTGTTGTTGCGC  67 209
        pmpM 5470578 .. 5470605 +  -8.3  -3.01712   CCGAGGGCATAGGCG        GCGCCGACCAG GTCGAG CGGCTCGGCGC         TGTTGCCCAGCGGCA  57 450
JJQ57_RS25960 NONE
JJQ57_RS25965 5472376 .. 5472390 + -12.8  -2.62293   GAGCATCTTCGCCTT               GCCGCC GAA GGCGGC               CTTGATCTTGCGGTT  64 287
JJQ57_RS25985 NONE
JJQ57_RS25990 NONE
JJQ57_RS25995 5476805 .. 5476831 +  -6.5  -3.19192   CCGACCTCGACGCCA        TCGCG-CATGGC CAAG GCCACGGCGCGG         TTGAGTTCGATCACC  51 244
JJQ57_RS26020 5480780 .. 5480795 +  -5.4  -4.07568   TCGCGAGAGCCTTCG              GCGT-GC CGG GCGACGC              TTTTGCCGGCGAAAC  63 48
JJQ57_RS26025 5482389 .. 5482411 + -10.4  -3.16564   CGCCGGCCGGACTGA           GGCGCGCCGC TCA GCGCAGCGCC           TTGCTCAACTGGCCA  64 26
JJQ57_RS26045 5487002 .. 5487031 +   -12  -2.52464   CCCCGGAAGAGCAGC       GCCGCCGGCCCG CACGGC CGCGCCGGCGCC        TGCCTTCCCCGCCAG  65 147
JJQ57_RS26050 NONE
JJQ57_RS26055 NONE
JJQ57_RS26060 5489232 .. 5489260 + -15.2  -2.63596   CCGCACTGATGTACC        CGCCCTCGCCGG CCCGC CCGGCGGGGGCC        TGCTCTACCCTCGCC  77 32
         ggt 5490980 .. 5491008 + -13.8  -2.75064   GTGAAACCCTGACAG       GACGGCGGGCGGC CGAC GCCGCCCG-CGCC        TGATTGCGTGCAACG  72 29
JJQ57_RS26070 5492209 .. 5492241 +  -6.2  -2.79796   CCCGCTCCGCCGCCC     ATCGTGGCGGC-GGG CTGG CCTAGCCGCGACGAC      TGTGATGGAATCCCC  46 84
JJQ57_RS26075 NONE
JJQ57_RS26080 5495540 .. 5495580 +  -8.2  -3.63515   TCATCCGGCATTTCT CACCCGCCTGCGAT-TCCGC TCG GCGGATAACGCCGG-GGGCG TTATTCGCCCTACCC  65 96
JJQ57_RS26085 NONE
JJQ57_RS26090 5497478 .. 5497507 +  -2.8  -3.28712   TAATCGTGGTAGGCA       CCGT-AGCGTTGG CCATT CCAGCCCTCGCGG       TTGTCGCCGCGCGGG  46 185
JJQ57_RS26100 5500075 .. 5500091 +  -4.3  -3.64236   TCGGTGAAGTGACGC              TGCGGGT CGT ACCAGCG              TTTCCAGGTTTCCAT  55 265
JJQ57_RS26115 5502493 .. 5502503 +  -4.6  -3.29144   AGATGCGGAAGCCCT                 CGCT CCT GGCG                 TTCTGCAGCACGTAG  49 418
JJQ57_RS26180 5517788 .. 5517802 +    -7  -3.14132   TCGATGCGCAGCCCA               GGACGG GTG CCGCCC               TTGCTGCGGAACAGC  52 220
JJQ57_RS26195 5520453 .. 5520467 + -12.8  -2.55351   CTGCGGCATCTCGCC               GCGCGC CAG GCGCGC               ATTGATGTCGCGGAC  67 100
JJQ57_RS26210 5523442 .. 5523475 +  -7.3  -3.01712   GCGGCCTGAGTCGCG     CCGTCAGCTCCAGTGA CGC TCGCGGGTGC-GGCGG     TCTTCGCCGAAGCCG  54 32
JJQ57_RS26235 5528020 .. 5528034 +  -4.2  -2.57211   CACGAAAAAGGGAAC               CTTCGT GAA ACGACG               CTTCTGGCCCGCCAT  41 74
        lepB 5528740 .. 5528763 +  -8.9  -2.82193   CCAGCTTGGCCGGGA          CCCACTCGGC GAACA GCCGA-TGGG          TGTCGTAGCTGTCGT  54 178
        aitP 5534221 .. 5534232 +  -3.6     -3.81   ACGTCGATCACCGCG                CCGG CCAG CTGG                 TTGTTCTCCAGTGCT  57 236
JJQ57_RS26290 5537916 .. 5537929 +  -3.8  -3.41125   ACAGGAGCGGATACC               TCGG AACGTG CCGA                TTCTGCATGTCTGGA  51 116
JJQ57_RS26295 5538988 .. 5539019 + -10.9  -2.50113   GCGACTGACGCCATA     C-GCTCGGACGCGGC TTAC GCCGCGTC-GGGCAG      CTTCCTGAAGTAGTC  62 33
JJQ57_RS26305 NONE
JJQ57_RS26310 5541349 .. 5541361 +  -4.8  -3.02144   GCTTCACTGGCACCG                GAGC CAACC GCTC                TGTTCCGCACCCTGC  47 127
JJQ57_RS26315 5542748 .. 5542764 + -15.1   -4.7497   CGCGCCAACGAAGAA              GCCGGGC ATT GCCCGGC              TTTTTCATGCCTGGC 100 46
JJQ57_RS26335 5547513 .. 5547539 +  -4.3  -2.70932   GTCGCCTCGGCATGC        GCGCGAACCCGC GTCA GCGGCGTCG-GC         TGCTTCCCCGCCACC  43 360
JJQ57_RS26345 5549759 .. 5549776 +  -5.5  -3.21099   ACCACCACCGCCACC             GGGC-CGC TGC GCGGGTCC             TTCATGATCGCCAGG  49 391
JJQ57_RS26410 5563494 .. 5563525 +  -5.6  -3.78953   CGAACCGCCCGGCCA      GCACCTGAGCCGGG CCAT CCCGGCTATGCCGC       TTTCGTCATCCGCCT  60 18
JJQ57_RS26415 NONE
        lhpB NONE
JJQ57_RS26425 NONE
JJQ57_RS26430 5567650 .. 5567671 +  -4.3  -3.05384   ACGCCCAGGGCGATC           CCCGGCC ACTGCCCC GGCCGCG            TTCGCTGCCCCGGCA  45 518
JJQ57_RS26440 5569078 .. 5569105 +    -4  -3.66178   GTCTGTCAGTCTCCG        GCAGCAGTCGCTC ACT GCGCGGC-GATGC        TTTCCCGTTCACGCC  53 81
JJQ57_RS26455 5571742 .. 5571784 + -12.7  -2.78596   GACTCGCCGGGCAAC TGAGGCG-C-GCGGCCGGG CCCTGTT CCCGGCCGCCGGCGCCCCG TATGCTGGCGCGGTC  68 23
JJQ57_RS26460 5572608 .. 5572625 +  -5.5  -4.36914   CCGCCACGGGGCGGC             GGTAGCA ATCC TGCTCCC              TTTTGTAACACCGCC  71 50
JJQ57_RS26465 5573669 .. 5573696 + -16.2  -3.54741   TACCGCTGAAGCCGA        GGGCGCGGTCCG CCGT CGGGCCGCGCCG         TTTCCCCCCGTCCTG  91 32
JJQ57_RS26470 NONE
JJQ57_RS26475 NONE
JJQ57_RS26480 NONE
JJQ57_RS26485 NONE
JJQ57_RS26490 5578657 .. 5578675 + -14.6  -3.22521   CCGTCGCCCTGTGAC             TCGGACCG CAG CGGTCCGA             TTGAATTCGTATACG  80 120
JJQ57_RS26495 5579612 .. 5579624 +  -9.1  -3.28712   CAGCCGGCCGGCGCT                GCCGA ACG TCGGC                TTGTAGCCAACGCCG  63 7
JJQ57_RS26500 5581312 .. 5581366 + -12.9  -2.71011   GGATTGAGCACGCCT GGAAGCCTG-G-ATGGCGGATAACGCC GTT GGCGCTATCCGCCCTACGCAGTCGTCC TCGTTGCGCCACGCT  68 34
JJQ57_RS26510 5584292 .. 5584331 + -13.6  -3.29144   CCCGCAGGCGAGCTA GGGCGTCGCGCGGCGCAG CACCAA CTGC-CCGC-CGTCGCCC  TTCTGCACCCGGTAG  77 41
JJQ57_RS26545 5593960 .. 5593970 +  -8.2  -2.71731   GGCCATGGCGAATGA                 CGCC GGT GGCG                 TCGTTCGCCCCTACG  54 44
JJQ57_RS26550 5596794 .. 5596817 +    -3  -3.95073   GCGCACGCGCTCGCG          GCTCTTCACC GCCA GGTCCAGGGC           TTTCTGCATGTCCAG  56 66
JJQ57_RS26565 5600191 .. 5600210 +  -2.8  -2.62192   GCTCCGCTCCATCTC            TCCTG-CGG AAA CCGACATGA            CTTCGTTGACTCAAC  39 66
JJQ57_RS26570 5601413 .. 5601431 + -11.6  -2.55074   ACTGGCGCTTTTGCC             GGCGCAGG CCG CCCGCGCC             TGCCTTACCGTTCCC  65 347
JJQ57_RS26575 NONE
JJQ57_RS26580 NONE
JJQ57_RS26585 5606007 .. 5606037 +  -4.7  -2.52464   CGGCCACCCGGCGGG      TAGTCCGGGGCGAT CCGC ATCGCCGCG-ACGA       TCAATTGCCGCAGCA  42 461
JJQ57_RS26595 5607034 .. 5607069 + -13.2  -3.35679   GTCCTGGCGATCATC    GAAGGCGCGGCGCGCTG AGA CAGCGC-CTGCGCCCGC    TTCTCAGTGGCGCGA  74 8
JJQ57_RS26620 5611414 .. 5611462 +    -4  -3.28791   ACAGCATGCGGCGGC CAGCCGACTGAAC-G-GAGGTCG ACGGAA CGGCCTTGCAGTTC-GTCAGCTG TTCTCCCCCGAGACT  48 15
JJQ57_RS26625 NONE
JJQ57_RS26640 5614188 .. 5614202 +  -6.4  -3.14564   CCGCAGGCGACTCAG               GCACGT GGC ATGTGC               TTGGTCACGCAATGG  53 46
JJQ57_RS26665 5619494 .. 5619535 +  -8.6  -3.05384   CCGGCGGAACGGGAT CGGCGC-G-CAGCGCTGCGG GTCA TCGAGGCGCCGGCCGCGCCG TTCGATCCGACGCAG  55 134
JJQ57_RS26680 5621437 .. 5621450 +  -3.8  -3.07994   TTCCTGACGATAAGT               CTGC ATGGCA GCAG                TTGACTGCCCTTGAG  45 512
JJQ57_RS26685 NONE
JJQ57_RS26690 NONE
JJQ57_RS26695 NONE
JJQ57_RS26700 NONE
JJQ57_RS26705 NONE
JJQ57_RS26710 NONE
JJQ57_RS26715 5629816 .. 5629840 +  -4.1  -2.54896   CACGCTGCTGCAACG          GGAAGCCTCGT GAT GTGCGGCATCC          TCGGTTACGTCGGCA  41 13
JJQ57_RS26720 NONE
JJQ57_RS26725 NONE
JJQ57_RS26730 NONE
JJQ57_RS26735 NONE
JJQ57_RS26740 5635061 .. 5635092 + -21.6  -4.05788   AAGTGGCCTGACCCG      ACAGCCCCTCGCCC CCAC GGGCGAGGGGCTGC       TTTCGTTTCGCCCCA 100 30
JJQ57_RS26745 5636259 .. 5636302 + -12.4  -2.86271   AGAACACCAGGTAGC CGTCCTCGACCTTGCCGTAGC GCA GCAGCGCCA-GATCGAGGACG TAGTTCTGGTAAAGC  66 113
JJQ57_RS26785 5644524 .. 5644550 +  -8.6  -3.14132   GTCGGCGTCGATGAA         GGCCAGGTCG AATTGCC CGGCCAGGCC         TTCGTCGAGCAACGC  56 276
JJQ57_RS26815 NONE
JJQ57_RS26820 5651206 .. 5651218 +  -9.1  -3.53811   AGCAGCTTCCACAGG                CCGAC GAT GTCGG                TTTCCGGCCAATCCG  64 289
JJQ57_RS26835 5653266 .. 5653299 +  -9.5  -3.05384   GCATAGGTCGGCCGA     GCACCGGGTGGCGC TGTCCAT GCG-CGCCCGGCGC     TTCGCTGGGGGGCGA  60 109
JJQ57_RS26840 5653964 .. 5653989 + -17.5   -5.4505   GAACGCATCGTACGA         CCGGGCCGCGG GTAA CCGCCGCCCGG          TTTTTTCTTGCCCGC 100 49
JJQ57_RS26845 5654988 .. 5655014 +  -6.4  -3.18582   GCCGCGGGCGGCCAG         TTCCGGGCGGCC GAT GGCGGCGCAGAA         TTGCTGCATGAACTG  51 408
JJQ57_RS26870 5659910 .. 5659922 +  -4.8  -3.66178   AGCTCTTCACTTCCC                CCTG CCGAA CAGG                TTTGAGCTTAGACCG  55 80
JJQ57_RS26880 5662783 .. 5662798 +  -8.2  -3.23447   ATGGAGTCGACGATG              GCCTGG TCCA CCGGGC               TCTTGTCCAGGTTGC  58 231
        napE NONE
        napF NONE
JJQ57_RS26915 NONE
        napA NONE
JJQ57_RS26925 NONE
JJQ57_RS26930 5673629 .. 5673659 +  -9.7  -3.41051   GATATTGCGCCCGGC      GCGACCGTCGGCCGG GGT CAGGCCGA-GG-CGC      TTCTGCTCGGCCTGG  63 102
JJQ57_RS26940 5675972 .. 5676004 + -21.4  -3.95073   AGCGAAGGCCGCTAA     GAGCGACGGGGCGCC CAGG GGCGCCCCGTC-CTC      TTTCTCCGTCTCAGA 100 26
JJQ57_RS26955 NONE
JJQ57_RS26960 5680924 .. 5680937 +  -4.5  -4.24887   ACGCGCGCAGGGAAC               TCAGC TCTC GCTGG                TTTCTTCGCTCTCTT  66 104
JJQ57_RS26970 5683202 .. 5683254 + -14.2  -4.29304   GGCGGCGGCCTCTGG CCGCCAT-GCGCAGGACGAATAGTC GCTC GACTATTCGCCCTGCACGAAGCCGG TTTCTCTTCTAATCC 100 51
        nalC 5686344 .. 5686356 +  -4.1  -3.82486   CGAAAGGTGCGCCAG                CATGG TGG TCATG                TTGTTCATGTTGCGT  57 278
JJQ57_RS27050 5704345 .. 5704355 +  -6.8  -3.55444   TCAGGCTGTCCAAAT                 CAGG TCT CCTG                 TTTCGACGATAAGAC  59 499
JJQ57_RS27060 5705674 .. 5705692 + -13.1  -4.98531   AGAAGACATGAAAAA             GCCCGCC ATCAA GGCGGGC             TTTTTCCTTTCACGA 100 40
JJQ57_RS27085 5712564 .. 5712592 + -11.8  -5.52384   AACGAAGCCCACGAA        GAGGATGATTGC ATCTA GCCATCATCCTC        TTTTTTTCATCAGGC 100 94
JJQ57_RS27090 5713334 .. 5713349 + -10.4  -3.92542   CGGGGATATGGAAAA              GGCACC CCTG GGTGCC               TTCTTTCCGCCTGGC  76 64
JJQ57_RS27125 NONE
JJQ57_RS27130 5719899 .. 5719912 +  -3.7  -2.94099   CCGGGATTGCCGAAC               CCGCC CTGC GGCGC                TCTATAATCGACCCC  44 42
JJQ57_RS27135 5721934 .. 5721957 +  -5.2  -3.28712   GGTAGCAGGCGTTCG          CGCGCCTCGCC GCT GGTGATGC-CG          TTCTCGCCCAGCGCC  51 460
JJQ57_RS27165 NONE
JJQ57_RS27170 5726146 .. 5726171 + -13.3  -5.19275   CAGCCACACCAGGAA         CGCCGCCGCGAG ATT TTC-CGGCGGCG         TTTTCTTTTATCCGT 100 72
JJQ57_RS27175 NONE
        nagA NONE
JJQ57_RS27185 NONE
        ptsP NONE
JJQ57_RS27195 5733655 .. 5733673 + -11.6   -3.8591   GGCGGATAACGAAAA             AGGCGGCC ACT GGCCGCCC             TTCTTGCTTGTCCGA  81 186
        mltF 5740605 .. 5740632 +    -7  -3.33696   TGTCGAACACCAGCA       GCGG-C-CCGGC AGCACC GCCGGCGACCGC        TTGCTTCAAGGCCAG  54 497
JJQ57_RS27230 5742892 .. 5742928 + -10.6  -4.13014   GCCCTCGCGCACCAG    GACCGCGCCCACCGGC ACTTC GCCGAGGGCCGCGGCC    TTTTCCGCCTCTGCC  81 502
JJQ57_RS27255 5749006 .. 5749022 +  -9.3  -3.59979   CGACCGCCCCGCCAT              GGGCGGC ATG GGCGCCC              TTTCGCCTGCGAAAA  68 69
JJQ57_RS27260 NONE
JJQ57_RS27265 NONE
JJQ57_RS27270 5752549 .. 5752570 +    -5  -2.87136   GTGCTACAACCGATC           AGCGCGCT CTGGGT GGCGCGCA            TCTGCTCCTTGCTCG  44 239
JJQ57_RS27280 5754130 .. 5754140 +  -4.6  -3.40403   TTGATCGCACATCCC                 GGTG CGC CGCC                 TTATCATGCCGCCCA  53 37
JJQ57_RS27285 NONE
JJQ57_RS27290 5756467 .. 5756485 +  -3.1  -4.62336   CGCGCCCGGGCTCTC            G-CAGCGC TGAG GCGTTGTC             TTTTTCGCATCACGT  69 16
        dctP NONE
JJQ57_RS27300 NONE
JJQ57_RS27305 NONE
JJQ57_RS27310 5760386 .. 5760401 +    -9  -2.71712   CCCGGCGATCGCCTG              CACCGA ATGC TCGGTG               GTTTCCAGCAGGCGC  55 133
JJQ57_RS27320 5762470 .. 5762484 +  -4.9  -3.66018   TAGAGATGGTGCCAG               GCGCT GCTCA GGCGC               TTGTTGAGCTGGTCC  55 517
JJQ57_RS27340 5764699 .. 5764718 + -12.8  -3.72576   GGTCAGAAGGAACAG            GGGGCGCG TCGA TGCGCCCC             TTTCATGACCAAGGG  81 67
JJQ57_RS27345 5765505 .. 5765523 +  -6.6  -2.83343   TCCTGCCAACGCACG             TCGGCGAG AAC CTTGCCGC             TGTACTGGTCGATGT  48 392
        leuA 5771559 .. 5771576 + -12.7  -5.14965   CACGGAAGGAAAAAA             GGGAGCC AGGC GGCTCCC              TTTTTTCATGGGCAT 100 45
JJQ57_RS27380 5773789 .. 5773815 + -16.6  -3.18681   TTCGGCCGCCTCGCC         CTGGCTGACTCC GGC GGAGTCCGCCAG         TTGCTGCAATTGACC  81 233
JJQ57_RS27495 5794294 .. 5794325 + -24.6  -2.71364   TCATCTCCATGAAAA      TGCACAAGGGCGCC CGCG GGCGCCCTTGTGCA       TCATTGCGACAGTCA 100 82
JJQ57_RS27530 5800723 .. 5800738 +  -7.5  -5.55769   AGGACAGCAGAGAAA              CCGGC CTTCGC GCCGG               TTTTTTGTTGTCCGC 100 74
JJQ57_RS27540 5803293 .. 5803310 + -12.7  -5.14563   ACAAGGAAGCACAAA             GGCCACC CGTG GGTGGCC              TTTTTTCATACCCGG 100 111
JJQ57_RS27565 NONE
        holC NONE
JJQ57_RS27575 5810172 .. 5810217 +  -3.6  -2.78715   ATCCGGACGCGGCGG GCGCCCGCCGCGGCCCGCGG CCTTAC CCCCGGGCCGCCATCCCCGC TATACTCCCGAACTT  40 40
JJQ57_RS27580 5813137 .. 5813159 + -20.6  -4.56914   GCGCTCTAACTCCAG           CGCCCGCCTC CCA GAGGCGGGCG           TTTTGCTTTCACTCG 100 32
JJQ57_RS27590 5814753 .. 5814809 + -11.4  -2.52676   GGAAGTCATCAAGTA AAAAAAGCG-GCCG-CCGGCCGCGGGCG TCC CGCCCGTGGCCGGACGGCACGATAATCC TGCCTTCACGCACTC  62 25
JJQ57_RS27595 NONE
JJQ57_RS27600 NONE
JJQ57_RS27605 NONE
        rlmF 5819721 .. 5819731 +  -2.4  -2.81133   TAACAGTTTCTCCGG                 GCTG GCA CTGC                 TCTAATGGCTGCCTC  39 168
JJQ57_RS27615 5820145 .. 5820155 +  -6.8  -3.72576   AAAGGAGCCGATGCC                 GCAG GTT CTGC                 TTTCCTCGAAGAACC  62 54
JJQ57_RS27625 5821389 .. 5821400 +  -4.4  -3.85817   GAGCTAATCGGCGCG                GAAC TGTA GTTC                 TTTCTACACCACAAT  58 17
JJQ57_RS27630 5822678 .. 5822716 +  -5.1  -3.05384   ATAGCTTGCCAGTTC  CGGGTATTCGCTG-GCGG CGAC CCGCTCCGCGACCACCAG   TTGGCTGAAGCGCCA  47 248
JJQ57_RS27640 5824685 .. 5824724 +  -9.3  -3.20382   ACCACTGGCTGTACT CGACCAGC-GCCGGGCCGTC GTC GATGGCC-GGCAGCAGG-CG TTCCTGGATATCGAC  59 467
JJQ57_RS27650 NONE
JJQ57_RS27655 5826826 .. 5826838 +  -4.7  -3.05816   ATCGCGGAAACCTGC                GCGGC GCC GCCGA                TTACCTGAAAGGTCG  47 82
        yejK 5827879 .. 5827899 + -12.5  -3.68351   TGACCCGCGCCGCCC            CGGAGCGCC GCC GGCGCTCCC            TTTCCCTCCTCAGCC  81 38
JJQ57_RS27710 5835915 .. 5835949 + -11.2  -3.72576   GTAGTTCAGCGCGTA     GCCGCCGAGCAGCTCT TCC AGCGCCGCCCGGCGTC     TTTCGTCGAGCGCGG  73 74
        rhlB 5839608 .. 5839629 + -15.9  -5.04601   GGCGTGGAGAAAAAA           GGCGAAGCC ATCC GGCTTCGCC            TTTTTCGTTTCTGCG 100 46
        dauB NONE
        dauA 5841849 .. 5841860 +  -7.2  -3.53444   CTGTCTCCCTGATGA                CCCG GCGG CGGG                 TTTGCGGCACACTCG  60 29
JJQ57_RS27735 5842530 .. 5842583 +  -5.9  -3.08015   AGGAGCTGAAGGAAG GCGGCGACTGACGGCAGCCG-CCGC CGGCGA GCGGTCAGTCGCCGT-AGATGTCGC TCTTGAAGTACTTGC  49 15
JJQ57_RS27745 NONE
JJQ57_RS27750 5846628 .. 5846642 +    -7  -2.78935   CCAGGCGCACGTAGC               GCGCCG GCC CGCCGC               TCTGCTCGGCGCTGT  48 328
        narX NONE
        narL 5860566 .. 5860595 +  -2.7  -2.73875   GCGCTGCGTCGATAC       TGGCGGCTTCCTT CCAC GAGGCGCCCGTCA        TGATGTTCGAACGCA  39 81
JJQ57_RS27805 5860995 .. 5861012 +  -8.3  -2.78384   GCTGCGAATGACGGC             GCGGCCG GGGG CGGCGGC              TATCCTGCCGAAACC  54 30
JJQ57_RS27810 5861634 .. 5861649 +  -2.4  -3.06696   GACCGAGGGAGGACC              CGATGG AAAC CCGCCG               TCTGTTCGACCAGGG  41 39
JJQ57_RS27815 5862382 .. 5862401 +  -5.6  -4.07568   CGCGCGCAAGGACGC            CTGACCGA GCCT TCGGGCGG             TTTTCCGCGGCCGGC  65 22
JJQ57_RS27820 NONE
JJQ57_RS27825 NONE
        tpbA NONE
JJQ57_RS27835 5865487 .. 5865498 +  -2.2  -3.06915   AGGTCGGAAAAAGGA                TGCG CGCA TGCA                 TTGGCTGGACTACCT  41 48
JJQ57_RS27840 5865785 .. 5865814 +  -6.3  -4.37092   GCGGGCGCTCGCCTT       GCGAAG-GCCGCGC TCA GTGCGCCCCCTCGC       TTTTCTCCAGCGGCT  73 71
JJQ57_RS27850 NONE
JJQ57_RS27855 NONE
JJQ57_RS27860 NONE
JJQ57_RS27865 5871100 .. 5871117 + -14.1  -3.37622   CGCCGAAACGAAAAA             GCCCGGC ATCC GCCGGGC              TTCTCCATGCCTCTT  77 116
JJQ57_RS27890 5877173 .. 5877194 + -15.1  -3.06302   ATAATCGCCCGCCCA           GTGGCGGGC CCCT GCCCGCCGC            TTCGATGGCGGTGGT  81 45
JJQ57_RS27895 5878613 .. 5878627 +    -7  -3.66288   GCATTGCCGGTGAGC               GGGCGG ATG CCGGCC               TTCTGTTGCAGGCTG  61 413
       mdrR1 5880206 .. 5880220 +  -5.8  -3.43553   TCCCGCAGCATAAAA               TGATAA CTA TTATCA               TTCGTTAATCCTTCT  55 79
JJQ57_RS27910 NONE
JJQ57_RS27915 NONE
        fecA 5884227 .. 5884256 + -18.6  -2.55074   ATCCGCCCTTCCCGC       CGCCGGGCCTGG TCCCCC TCAGGCCCGGCG        TCACTTCCAGTTCGG  87 91
JJQ57_RS27930 5886800 .. 5886814 +  -3.5  -3.54543   AACCAGGCAAGGACG               CGGTT GCCCA AGCCG               TTTCCGAAGGTGCCT  51 303
JJQ57_RS27935 NONE
JJQ57_RS27940 NONE
JJQ57_RS27945 NONE
JJQ57_RS27950 NONE
JJQ57_RS27955 5889744 .. 5889754 +  -8.2  -3.29829   TCCGTGGGGCGAATA                 CGCC ACC GGCG                 TTATCCGCCGGTATC  60 69
JJQ57_RS28010 NONE
JJQ57_RS28015 5900687 .. 5900700 +  -8.1  -3.03124   CCGCGCTCAGGGGGC               GCAGG TCGG CCTGC                TCTTCGGCCCTGAGG  53 145
       copA1 5905760 .. 5905793 + -11.7  -2.70932   CCAGCACGCCAGGCA     CATGGGGT-GGCGCGC CTA GCGCAACAACCCCATG     TGCTTGGCCCGCGCC  66 42
JJQ57_RS28055 5915450 .. 5915483 +   -13  -3.14602   ACGGCGTTGAGCCAT     CGGCGCCCGGCCGG CTCGCA CTGTCCGGGCGCCC      TCTTCCTCAGGTGCC  73 42
JJQ57_RS28065 5917680 .. 5917690 +  -8.2  -3.30441   CCGTAGGGCGCATAA                 CCGC AGC GCGG                 TTATCCGCCATGGTG  60 144
JJQ57_RS28085 5921768 .. 5921795 +  -9.8  -4.85782   AGCGCCCCTTGTTCA        CGCCGGTGT-CGC ATG GCTTGCACCGGCG        TTTCTTTTTCCGCAA 100 79
JJQ57_RS28090 5922870 .. 5922909 +  -7.8  -3.07816   GGCGAACTGAAGGAA  TCCTTCGGCGAACGTGC GGGAAAA GCGCGG-CGCCGAAGGC  TTCCATACGTCCGAA  54 31
        betT 5925028 .. 5925046 + -13.1  -3.10715   TGAGTGCAGGAAAAG             GGGGCGC GCAGG GCGCCCC             TTCCCTCATCCTCCG  71 38
JJQ57_RS28130 5932757 .. 5932780 + -13.9  -5.46698   ATGCGCAGGAAAAAA          GCGCAGGAG CCTGGC CTCCTGCGC           TTTTTTCGTTTTCGG 100 65
JJQ57_RS28170 5943408 .. 5943420 +  -6.9  -2.53876   TCGACAAGGCTCGGA                GGCGG TCT TCGCC                TCGGTTACACTGCAC  48 259
JJQ57_RS28175 5944722 .. 5944734 +  -3.3  -3.55444   TAGAGGCCAGTACGC                CAGCG CCT CGCTA                TTTGCCGGATGGCCG  51 38
JJQ57_RS28195 5948223 .. 5948236 +  -3.7  -3.39895   TTCGAAAACATTAAT               CCGGG ATGG CACGG                TTCCTTCATAGACAC  51 123
        sfnG 5949386 .. 5949418 +   -17  -2.53876   GGCCTGATCGGCAAC     GGCGGCCGCC-AGGC GTTG GCCTCGGCGGCCGGC      TGGGTTAGAGTCGCG  83 34
JJQ57_RS28205 5950120 .. 5950149 + -11.3  -2.90075   CAACGGGATGTGAAC       GGCGCCGCGCGCCG ATT CGCCGCGCTG-GCC       TATGCTTGACGAGCC  64 28
JJQ57_RS28210 5950654 .. 5950667 +  -3.7  -4.07568   TGAGTCCCGACAGGC               GCGGC ACCA GCAGC                TTTTCGAAGAGACGC  61 61
JJQ57_RS28220 5952666 .. 5952704 + -17.4  -2.71263   CTGCCCCATTGACCG  GGC-GCGCGCCGGGCTG GACAAG CGGCCCGGCGCGCCGCA   TGCTTCGCCCCCATT  84 29
JJQ57_RS28225 NONE
JJQ57_RS28230 5954171 .. 5954190 +  -4.2    -3.727   CAGTTCCTGCAGGCG            CACCG-CGA GGA TCGGCGGGG            TTTCGCTGTAGTCCA  54 279
JJQ57_RS28240 5957011 .. 5957049 + -14.5  -3.53031   CGCCTGATCCGCCCT  CCGAGC-GCGACCGTGCG TCAG TGCCCGGTCGCCGCCCGG   TTGGTTTACAGTGGC  83 34
        fieF 5958185 .. 5958243 +  -7.9  -3.21218   ACCACGTCGTAGCTG GCGGCCGGCCCGCTGAC-CGGATAAACGG GTC CCGCT-GCCCGCGGCGGCGGGCTGACCAC TTCGTACTCGCGGGT  54 223
JJQ57_RS28255 5959656 .. 5959678 +    -7  -3.49168   TGACACGGAACAGGC          GGCATGCCG TATAAT CGGCA-GCC           TGTTTCAGTTGTCAT  57 61
JJQ57_RS28260 NONE
JJQ57_RS28265 5960923 .. 5960948 +  -6.7  -3.14132   TGTGCCGGGGGTCGG         CGATGCGCGCC TGCA GGCGACCGTCG          TTGGTCAGCAGCAAC  52 424
JJQ57_RS28275 5962670 .. 5962680 +  -2.4  -3.62597   CGCGCGCGCAGGGCC                 AGGC CGC GCCA                 TTCTTCCAGGATCCA  51 344
JJQ57_RS28310 NONE
JJQ57_RS28315 NONE
        hemL 5972968 .. 5972989 +  -4.3  -3.05384   TTGCCCGCCCCGATC           CAGGAGGTG TCTT CCCCTCATG            TTCCGTACCGGCCGC  45 215
JJQ57_RS28325 5973960 .. 5973987 +  -3.3  -4.13014   AACGCTAGGAACCGG        GGGCCCCGC CCTCTATAAT GCGCGGTCC         TTTTCGAACTGTCCG  61 450
        miaB 5975397 .. 5975409 +  -3.3  -3.53012   ACCTTCCCGCCGCCA                CGGTG CAC CAACG                TTTCAGCGGGAACCG  49 70
JJQ57_RS28340 NONE
        ybeY NONE
JJQ57_RS28350 5977855 .. 5977882 + -18.4  -3.01924   CTGCAGAACTGAGCG        CGCCCCCTCCGC CGCG GCGGAGGGGGCA         TCTTCCCGCGCCGTC  90 29
         lnt 5979594 .. 5979614 + -15.4   -3.1247   CCCCTCCTGGATAGA            CCGGCGCC CCTGC GGCGCCGG            TTGCGTCTCAGCGGT  83 47
JJQ57_RS28370 NONE
JJQ57_RS28375 5984417 .. 5984439 + -20.6  -3.30651   CACCCCGTGATGCCC           CGGGGCCGGT TTC ACCGGCCCCG           TCTTCTCCTATGAAG  95 31
JJQ57_RS28380 NONE
JJQ57_RS28385 5985966 .. 5985986 +  -6.7  -3.05384   CTCTGGCCATTGCAG            CGCACGAAC CAG GCTCGGGCG            TTCGATGCCGACGCC  51 261
JJQ57_RS28395 5987805 .. 5987815 +  -8.2  -3.29511   TCGTAGGGCGGATAA                 CGCC ACG GGCG                 TTATCCGCCGCTGCG  60 191
JJQ57_RS28405 5990229 .. 5990262 +  -5.9  -3.50853   GTCCGAGCCCGGCCG     CGAGGAG-CGGTACAG GCG CGGTACCGTCTCCAGG     TTATGGTTGAACACG  56 521
JJQ57_RS28470 6002639 .. 6002651 +  -6.2  -2.64155   GGCAAAGCCGCAGCG                GGCG AAGGC CGCC                TCGATTTCCGCGGCA  46 150
JJQ57_RS28480 NONE
JJQ57_RS28485 6005525 .. 6005539 +  -2.8  -3.12668   GTGCTCCAGCAGCAC               CTGG ATCCGCG CCAG               TTGCATCTGCGCGTC  44 78
JJQ57_RS28505 6007811 .. 6007840 +  -4.7  -3.17075   CCTCAGCCTCTGCTT       CGTCTGAGCCCGC CCCA GCGAGCGCTGCCG        TTCGCTTGACGGCCA  48 19
JJQ57_RS28510 6009725 .. 6009765 +    -9  -2.81547   GGGAAGGAAAAACCG GCG-AGGGCGCGGCG GGCAAATAGATA CGCCGCGCACTACGC  TCATTGGTGTGGAAG  57 3
JJQ57_RS28515 6010778 .. 6010796 + -12.4  -3.06261   CAGCGCGGCAGCATG             TCCTGGGG AAT CCCCAGGG             TGTTGAGGATTCGCG  67 368
JJQ57_RS28540 6016684 .. 6016701 +  -2.6  -3.53224   TCTAGTAGGACCCCG             GACCGG CCGCGA CCGCTC              TTTCCCGGAGCGGTC  47 36
         eat NONE
JJQ57_RS28550 NONE
        eutC 6020640 .. 6020654 +    -7  -2.71681   GCCGAAGGATGGGCC               GGCGCG CGA CGCCCC               TCCTTCGACCGATTC  49 49
JJQ57_RS28560 NONE
JJQ57_RS28565 6022166 .. 6022186 +  -8.9  -2.57132   GCGTGGCGCAAAGAC            CCGCTGGGG ATG CGCTAGCGG            CTTCTGCAAGGCCAG  53 8
JJQ57_RS28575 NONE
JJQ57_RS28580 NONE
         ppa 6025979 .. 6025996 + -14.1  -4.93968   CCTCGCCGAAAAGAA             GCCCCGC AGCC GCGGGGC              TTTTTCATTCTCCCT 100 46
        mucE 6027476 .. 6027487 +  -4.4  -2.64973   CAGGGCTGGCTTCGA                CACA CGGA TGTG                 TCATCTCCCCTTCCT  41 271
        aqpZ 6028314 .. 6028338 +  -6.4  -2.71681   CGGCCGAGGAAACGA         CA-AGGGAGCC TGCG GGCTCCCGATG          TCGTTGCAAGGATTG  49 73
JJQ57_RS28605 NONE
JJQ57_RS28610 6031980 .. 6032000 +  -5.5   -3.6581   GCTCCAGGGCTGCCC            TGGAAGT CGCGATA ACTTCCA            TCTTTTAACGATAGT  57 253
JJQ57_RS28615 NONE
JJQ57_RS28620 NONE
JJQ57_RS28625 NONE
JJQ57_RS28630 6036809 .. 6036825 + -10.8   -5.1675   CCCCACCCCAGAAAA              GCCGGC CACAA GCCGGC              TTTTTTAATGCCTCC 100 199
JJQ57_RS28640 NONE
JJQ57_RS28645 6039350 .. 6039362 +  -3.3  -3.33696   GAAGTCCCCGGCAAA                GGTAG GGG CTCCC                TTGCTTGGGCGCGGC  46 55
         dxs 6041341 .. 6041351 +  -8.2  -3.63515   GACAACGGCGGATAA                 CCGC GTT GCGG                 TTATTCGCCCTCCCC  65 54
JJQ57_RS28720 NONE
JJQ57_RS28725 6052464 .. 6052484 +    -9  -3.53012   CACGCCGAACGCGGG            CAAGCCTG AGGCA CGGGCTTG            TTTGCGCGCGGCGCG  65 17
        trxA 6053870 .. 6053881 +  -2.2  -3.32844   GCCAGGCTAGGCAGG                CGGA AAAA TTCG                 TTATAACGTAACAAA  45 482
JJQ57_RS28740 6054506 .. 6054545 +  -5.4   -2.5955   AAGCTGTAGGATCGT  TCCGGAGGCGCCGCGAGG GATT CGGCGCGGCGCCCCTCCA   TCCATTCTCGAGGCT  43 32
JJQ57_RS28745 NONE
JJQ57_RS28750 NONE
JJQ57_RS28755 6057112 .. 6057122 +  -2.4  -3.75153   ACGACATGCGACAAT                 CCGC CGC GCCG                 TTTACGTTGCGGCGG  52 41
        oprG 6057983 .. 6057998 + -11.8   -4.4891   CCCCCAACGGAAAAA              GGCGCC TTCG GGCGCC               TTTTCTCATCCTGCG 100 66
JJQ57_RS28765 6058446 .. 6058460 +  -2.1  -3.61398   TCGAAGCGGAAACGC              CGCAGC AGGC GCT-CG               TTGTTCGCCCGCGAA  48 90
JJQ57_RS28800 6066634 .. 6066666 +  -6.8  -3.28712   GCGAACGGCAACGCC      CCGCCGCCATCGCC CTCCC GGCCCTGGCGATGG      TTGTCCGGCGCGCCC  54 473
JJQ57_RS28810 NONE
JJQ57_RS28815 6067783 .. 6067793 +  -2.4  -2.75844   ACCCTGTACCAAATG                 GCAG TTG CCGC                 ATTTCCCCTCGGGGC  39 105
JJQ57_RS28820 6070906 .. 6070941 +   -11   -3.1544   GTCGAGGCCGCCGCG    GCCAGTCGCCGCGGCGG TTA CCGCAGCGG-GACGCGC    TTGGGTATCCTGTCC  67 42
JJQ57_RS28825 6071736 .. 6071749 +  -4.5  -3.72324   TGAGGTCGGCATCGC               GCTTG ATAC CGAGC                TTCTTCATGGCACTG  55 93
JJQ57_RS28865 NONE
JJQ57_RS28870 NONE
JJQ57_RS28875 6085817 .. 6085849 +  -3.4  -3.53761   CCGGCTCCGGTAGGG     CGCTC-GCCC-TGTCC CAC GGACAAGGGCCGACCA     TTTGCCGGGCGATTA  49 107
JJQ57_RS28880 NONE
        hpaB 6087976 .. 6087986 +  -2.4  -2.79785   CAATGACGCCCGCGT                 CGCC TCC GGAG                 GTTATTCCCATGTCC  39 35
        hpaC NONE
JJQ57_RS28925 6094466 .. 6094478 +  -3.3  -4.33417   CGCGCTGGATGAAAC                GGGCG ATC TGCTC                TTTCTTGTCGGTCAC  66 424
JJQ57_RS28940 NONE
JJQ57_RS28945 NONE
JJQ57_RS28950 NONE
JJQ57_RS28955 6099457 .. 6099483 +  -3.7  -3.06183   GTGCTGGCGGTGGAC         GGCGGCT ATCTCTGCGCCTG AGCCGCC         TTCGCTCCGGATGCA  45 5
JJQ57_RS28960 NONE
JJQ57_RS28965 6103076 .. 6103097 +  -6.5  -3.53012   CACTGGAGATCAGCA           C-CACCGAGG CAG CCTCGGAGCG           TTTCAACCACGGCAG  56 401
JJQ57_RS28975 6104564 .. 6104577 +  -5.9  -3.64703   CGCCAGCGCGAGGAC               CTGGC TGGC GCCGG                TTTGGATAGGGCCAC  57 86
JJQ57_RS28980 6106068 .. 6106094 + -15.2  -2.71712   GCACCGCTCCCGTAG         GGCGCATAACGC GAA GCGTTATCCGCC         GTTTCGCCGCAACCG  78 63
JJQ57_RS28985 6107062 .. 6107084 +  -6.8   -3.8211   TCGCGTAGTCGAGCC           CCTCGGCGGC GAT GTCGACGCGG           TTGTTGTGGGTGGAC  64 515
JJQ57_RS28995 6108853 .. 6108873 +  -5.4  -2.82834   CGACGGAGCGTAGCG           GCGCGGGAC GCCG GTCCTG-GC            TATGATGGTGCCATG  46 57
JJQ57_RS29000 6109353 .. 6109363 +  -8.2  -3.63515   AGTATCGGCGGATAA                 CGCC CAT GGCG                 TTATTCGCCCTACAG  65 94
JJQ57_RS29020 6117499 .. 6117531 + -15.5  -4.15044   CTGAGCGCGCCCGCT      CCGGCATCCCTGCGC CAC GCGCGGGGATGCCCA      TTTATTCCGAGCCGG 100 37
JJQ57_RS29025 NONE
        bphP NONE
JJQ57_RS29035 6121089 .. 6121115 +  -7.2  -3.42124   AGCGAGGGCGCGCGG         TGGCGTTGGCGA TAG TGGCCGATGCCG         TTGTACCTCGTTTTC  60 61
JJQ57_RS29050 NONE
JJQ57_RS29055 NONE
        hpaE NONE
        hpaD NONE
JJQ57_RS29070 NONE
JJQ57_RS29075 NONE
        hpaH NONE
        hpaI NONE
        ccoG NONE
JJQ57_RS29105 6136344 .. 6136386 +  -9.2  -3.75884   TTAGATTGCAGGCTC CGGCTGGCG-CC-CCGTC TCCCCCCTC GACGGCGGTCGCCGGCTG TTCATTTCTTTCGGG  71 222
        ccoN 6137841 .. 6137852 +  -7.2  -2.57013   CCGCATGGCCTGAGC                CGCG ACAG CGCG                 TCCCTTCCCTTCCCG  51 28
JJQ57_RS29115 6138152 .. 6138174 + -12.7  -2.53392   GCACTGGGACAAGAA           TTGGCCGGC ATGAC GCCGGCCAG           TCGCTTCAGGGCTTT  67 13
JJQ57_RS29130 6141744 .. 6141767 +  -6.7  -2.56596   GTCGGTCAGCGACAG          TCCC-TGCGC CAGGC GCGCGCGGGA          TAGCTTCATCACCGG  47 252
JJQ57_RS29140 NONE
JJQ57_RS29145 6145850 .. 6145866 +  -7.3  -3.32343   CCTCGATACGGCGTT              GACTTGT TCA ACAGGTC              TTATCGAGGTGTCGC  58 108
JJQ57_RS29150 6146390 .. 6146432 +  -9.2  -2.79679   ACTAGAAAAGTCGCA CTCCGGCACTTCATGCG CTTGAACTTA CGCAAGG-GTGCCGGAG TGTCATGCAAGTATT  57 40
JJQ57_RS29155 6147733 .. 6147743 +  -2.4  -3.87373   GCAAACTCTAGGAAC                 GACC CAT GGCC                 TTTCTCGACGCTCTC  54 30
JJQ57_RS29160 NONE
JJQ57_RS29165 NONE
JJQ57_RS29170 6152581 .. 6152591 +  -8.2  -4.25104   CGCCCTGGAAGAACC                 CGGG GAC CCCG                 TTTTCCTCCAGGGCC  76 308
JJQ57_RS29185 NONE
JJQ57_RS29190 NONE
JJQ57_RS29195 NONE
JJQ57_RS29200 NONE
JJQ57_RS29205 NONE
JJQ57_RS29210 6161441 .. 6161459 + -13.1  -3.51232   CGCGCTTGCGACACA             GCCCCGC GGCCG GCGGGGC             TTGCTTTACGAAACG  76 56
JJQ57_RS29230 6167365 .. 6167377 +  -4.1  -2.78935   AGCTCGGCGAGCAGT                TCGAG CAA TTCGA                TCTGGTGGACGATAT  41 288
        fepB NONE
JJQ57_RS29245 NONE
JJQ57_RS29250 NONE
JJQ57_RS29255 6172933 .. 6172967 + -13.5  -3.14878   GCAAGCAAGTGAAAG     GCGCGGGCGGAAGGC TTCAC GTCTTGCGCCCACGC     TCTTCCGTTCAAGGG  76 29
JJQ57_RS29260 6173498 .. 6173514 +  -5.8  -3.76492   ACCGGCGCGGTATGC             CGCCGCG ATGG CGCG-CG              TTTCGTCGACTTCCG  60 206
JJQ57_RS29270 6175563 .. 6175585 + -13.4  -2.57211   TCCAGGCGCAGGTCG           CGCGCCAGCA GGT TGCTGGCGAG           GTTCTCGCGGCGGGT  67 175
JJQ57_RS29280 6179194 .. 6179207 +  -3.1  -3.34013   TGCGCCGCCTCGAAC               GC-CTC GCC GAGCGC               TTCGTTGACCGCCTG  46 187
JJQ57_RS29290 NONE
JJQ57_RS29295 NONE
         xth 6182189 .. 6182210 +  -5.7  -3.04263   GTGGGGTACGGCGCC           TCGCCCCAG TACT CCGGGACGA            TCTTCCAGATGCGCT  47 154
JJQ57_RS29310 6183928 .. 6183943 +  -6.2  -2.64616   AATGACAAGTGAGGG              GAATAG CTAT CTATTC               TGCTATCCATAAAAG  46 399
         piv 6185690 .. 6185718 + -17.5  -2.93393   GTCCGGGACAGGTAG        GGCGCATAACGCC AAC GGCGTTATCCGCC        GTTTATCCCGTGCAG  87 240
JJQ57_RS29325 6186638 .. 6186651 +  -3.7  -5.00616   TCCGCTCGCGATCCG               CCGGC CGGT GCCTG                TTTTTTCGCCGGCAA  81 43
        eftM 6187530 .. 6187551 +  -4.3  -3.53811   AGCGTTTCACAGGGG           GCTGCGGAG GATT CTTCGTCGC            TTTCGGCACGCTGCG  53 92
JJQ57_RS29335 6189339 .. 6189349 +  -8.2  -3.67976   CAGGTTCATCTTCAG                 CCGC ACC GCGG                 TTTCCAGTTCCTGGC  65 368
JJQ57_RS29345 NONE
JJQ57_RS29350 6192836 .. 6192848 +  -4.7  -2.96695   CATGCCGGCCGCGTC                CGGCG AAA CGCCC                TCATTTCGTCGAGCG  46 509
JJQ57_RS29365 6194911 .. 6194960 +  -6.9  -2.72379   ACGAGGGTTAGCAAG CCCCCCGCGCCACGGCC-CCGC CCGAGAA GCGGAGGCGGTCACGCAGGGGA TGGTTACCGGGTTCC  49 30
JJQ57_RS29370 6196394 .. 6196407 +  -3.1  -3.05384   GGAGCTGGAGAGCGT               TCCAGC CTC GC-GGA               TTCGCTCGGCCCGAA  43 100
JJQ57_RS29375 NONE
JJQ57_RS29380 NONE
JJQ57_RS29385 NONE
        pqsL 6201906 .. 6201929 +  -6.6   -3.8591   GTGGCGATCGAGGGC          CTGCTGCACG CTGT CGAGCAGCAA           TTGTTCGTTGTAGGG  62 315
JJQ57_RS29405 NONE
JJQ57_RS29410 6208331 .. 6208352 + -15.1  -5.40072   TCCGTCGAGCGTTGT           CGCGCGGCC CGTG GGCCGCGTG            TTTTTTTCGGGACAG 100 45
JJQ57_RS29415 6209737 .. 6209754 +  -4.1  -3.14132   GCCGGCCTGGTACTT             GTGTTCG TAGT CGAAGAC              TTCCTGGCCACCGAG  45 377
JJQ57_RS29430 NONE
        ppgL 6213982 .. 6213992 +  -8.2  -3.29829   CTGTAGGGCGAATAA                 CGCC AGG GGCG                 TTATCCGCCGCTGTC  60 183
        mexG NONE
        mexH NONE
        mexI NONE
        opmD 6220968 .. 6220991 +    -8  -2.57132   CACCAGGCTGACGCG          CTCCCCTGCC AACA GGCTGGAGAG           GTTGTCGCGGGCCAC  50 390
JJQ57_RS29465 NONE
        phzB NONE
        phzC NONE
        phzD NONE
JJQ57_RS29485 NONE
        phzF NONE
        phzG 6228647 .. 6228698 + -16.1  -2.84051   TCCCGCGGCCCCGTA GTCGGGCCGTAG-GGCGAATAACGCC ACC GGCGTTATCCGCCGCTGCG-CC-GAC GTTTCATCGCGGTAA  83 78
        phzM 6230083 .. 6230093 +  -2.4  -3.01712   CGCGCCTATCGGCAA                 CGCC TCA GGCC                 TCTTCCGCCCGCCCC  41 126
        pchD NONE
        pchC 6253272 .. 6253285 +  -3.1  -3.09516   CGCACATCCCGACGC               CCTTT CCCG AGAGG                TTGCATGATGAAAAC  43 4
        pchB NONE
        pchA 6255035 .. 6255062 + -18.4  -3.03771   GCCTGAAAACGAAGA        CCCCCTGCGGCC CGAG GGCGGCAGGGGG         TCTTCGAAGGTCTGC  90 35
        uvrA 6260089 .. 6260115 + -15.9   -4.8048   GGCGCTCATGAAAAA        GCCCCTGCGGCC GTGA GGC-GCAGGGGC         TTTTTCGTATCCGCG 100 47
JJQ57_RS29870 NONE
JJQ57_RS29875 6306673 .. 6306694 + -14.4  -4.25104   CGCCTGAAACGAAAA           CGCCGCGC ATATAA GCGCGGCG            TTTTCGTAGCGGCCC 100 34
        hemJ 6310029 .. 6310043 +  -2.8  -2.65993   GGTGGTGCTCAAACC               TTTCTG ACC CAGGAG               TCCTGTCCATGTCCT  39 19
JJQ57_RS29905 6311025 .. 6311045 +  -9.6  -3.30338   GGCCGCGCTGAAACC            GCCGGGTC ACGGC GCCCCGGC            TTGTGCGGGAGTTCT  63 30
JJQ57_RS29910 6312243 .. 6312267 + -12.1  -3.54129   CGCAACCCCTCGCGA          CGGGCGGGG TCCAATT CCCCGTCCG          TTTCGGAGAAATCTC  75 44
JJQ57_RS29915 6313166 .. 6313176 +  -2.4  -4.09685   TGGCCCAGGTCCGCA                 GCGC GGC GAGC                 TTTTCCGCCATCAGC  58 106
JJQ57_RS29925 NONE
        coq7 6315782 .. 6315810 + -20.5  -4.01888   CTGAATCGCACGCAT        GAAAAAGCCCGCT CGA AGCGGGCTTTTTC        TTTCTCGTGTGCGAT 100 37
         crp 6318295 .. 6318312 + -12.7  -4.74801   AGCACCCATGAAAAA             GGCCGGT CACA ACCGGCC              TTTTTCATGGGGTTC 100 43
JJQ57_RS30065 NONE
JJQ57_RS30070 6337782 .. 6337807 + -20.5   -5.7946   GCCGGGCACAAAAAA         GGCGGATGGCG CAAA CGCCATCCGCC          TTTTTTTCTTCCGCC 100 161
JJQ57_RS30125 6351279 .. 6351298 +  -6.4  -3.88291   CGCACGCGCTCGACG            CTGGCG CCGGCTCC CGCCAG             TTTGTCCGGATGGTG  62 114
JJQ57_RS30145 NONE
JJQ57_RS30150 NONE
        pdxA 6358803 .. 6358838 +  -8.8  -3.57144   AAACCGCCTACCAGA    TGGCGGCCAGCCGCTG CTGA CGGCGGTCGGCCATCG     TTTAGCCCTGCCGGC  65 6
        rsmA NONE
        apaG NONE
JJQ57_RS30170 NONE
        glpE NONE
JJQ57_RS30180 6363566 .. 6363586 +  -6.1  -2.63715   CTGTCGGAATGGTAC            CTGCGGGTT CGC AAGTCGCAG            TAGTCTGCCATCGGT  46 2
JJQ57_RS30185 NONE
JJQ57_RS30190 6366600 .. 6366612 +  -4.7  -3.04792   CGGCCGTCCACGGGA                GCCGC CAT GCGCC                TGTTCGCCATCGTCC  47 114
JJQ57_RS30195 NONE
JJQ57_RS30200 6368410 .. 6368445 + -10.5  -3.42996   GCTTCGGGAGTCAAC   GC-CTGGCC-ACGCCAT TCGA ATGGCGCCGGCCAGAGC    TTCTGCTGGATCCTC  65 47
        plsY 6370173 .. 6370207 +  -8.4  -3.61715   GGCCGCTGCGCAGCG     CCTGGTTGGCGCTGAC ACC GCCGGCGATCACCAGG     TTCTTCAGGCCGGTC  62 298
        rpsU 6371457 .. 6371474 + -14.1  -3.71649   AGTGATCGTGCCTCA             GCCCGGC CTCG GCCGGGC              TTTCGGCTTTCCGCC  84 62
JJQ57_RS30230 6371995 .. 6372007 +  -3.3  -4.07568   GCTGCCGCTCTGCGC                CCACG CGC CGTCG                TTTTCGAGAACACCA  58 81
JJQ57_RS30235 NONE
        rpoD 6375958 .. 6375980 +  -9.1  -5.27938   CGAGTGACGAACGAA           CCCCCGG CCTGAAAAA CCGGGGG           TTTTTCTTTGCCGCT 100 34
JJQ57_RS30245 NONE
JJQ57_RS30250 6379895 .. 6379911 + -15.1  -3.74347   CCCACCACCTTCAAA              GCCGCGC ATT GCGCGGC              TTTGCGCTTTCTAGG  90 34
JJQ57_RS30260 6381570 .. 6381581 +  -5.8  -2.51464   TGAGCGCCTGCACCT                GGCT CATC AGCC                 CTTGATGCGTCATCG  45 38
JJQ57_RS30265 6382165 .. 6382176 +  -3.6  -2.52543   ACGATATCGACTCCA                TCGC CAAC GCGG                 TAACTTCGAAGCACT  39 205
JJQ57_RS30275 6385306 .. 6385316 +  -8.2  -3.67296   TGAGCCAGGGGTCGC                 CGGC GTG GCCG                 TTTCCGTGAGTCGTA  65 6
JJQ57_RS30280 NONE
JJQ57_RS30285 NONE
JJQ57_RS30290 NONE
JJQ57_RS30295 6387626 .. 6387646 +  -2.5   -5.0538   CCAGGGTCGATACGG           TGTCCGGC GCGTGA GCCGG-CG            TTTTTTCGCGTCACC  77 226
JJQ57_RS30305 6388503 .. 6388515 + -10.5  -2.56596   GTCTTGGCATCCAGG                GCGCC CTC GGCGC                TGGCTTCCTCCAGCG  57 232
JJQ57_RS30315 6389737 .. 6389753 +  -2.2  -3.53012   ACGAATTCACTGACA              GTACGG CTACA CTGTGC              TTTCCCGGCAAGGAG  47 109
JJQ57_RS30320 6390193 .. 6390214 + -18.7  -3.39803   CGCCTGATTCCTTCC           CGCCGGGCC GCAC GGCCCGGCG            TTCTCCCTCTCCCTG  95 34
JJQ57_RS30325 6391270 .. 6391286 +  -6.5  -3.84406   GCAGGCCGAGGGCAC              GCTGGAC CAC GTCGAGC              TTGTTGTCGTAGAGC  62 287
JJQ57_RS30335 6392891 .. 6392903 + -10.5  -4.23999   CAGCTCGCGCAATTG                CGCCG CCA CGGCG                TTCTTTTCCGTCTCC  85 121
JJQ57_RS30345 6394215 .. 6394254 +  -7.6  -3.64703   GACCTGCAGCCCTGA  CTCAGCGCCG-CGCGGCGG TCG TCGCCGGGTCGACGCAGCG  TTTCACTGCGCGAGG  62 26
JJQ57_RS30380 6400003 .. 6400028 +  -3.1  -3.81146   TCGCGGGCGGCCAGC         CAGTCGCGCAC TTCC GCGCACCACTG          TTCTTCCTTCAGCAC  56 64
JJQ57_RS30395 NONE
JJQ57_RS30400 6405480 .. 6405497 + -14.1  -5.37593   CCGCGCGATGAAAAA             GCCCCGC TTCG GCGGGGC              TTTTTTCGTTTCCGG 100 45
JJQ57_RS30410 6408137 .. 6408173 +  -5.7  -3.37796   GCCGTTGATCAGCAA   CGCAG-CGGTCGGCCG CTCGAC CGGCCGACAGGCATCG    TTCTCCGTGGTCGGC  53 392
JJQ57_RS30420 6409663 .. 6409700 +  -5.6  -3.27475   CACCGCGGCGAAGTC  CTTGCGCACGCCAT-CCG GGGT CGGCGTGGCCTG-GCGAG   TGTTGTCCTGGAGAC  51 277
JJQ57_RS30440 6412214 .. 6412239 +  -3.3  -3.11634   CAGCGCCGATATCCG         TG-CCGGCAC AAGGAAC GTGCTGGCCA         TTGGCTGGTCTACAA  44 41
JJQ57_RS30445 NONE
JJQ57_RS30450 6413930 .. 6413951 + -17.3   -5.1675   CGCTGGTGACGAAAA           GCCCGAGGC CTGT GCCTCGGGC            TTTTTTCATCGGTCG 100 32
JJQ57_RS30470 6418485 .. 6418531 +    -8   -3.5764   CCCTTCCCGTTGCAG GTCCTGCGGGCAGGCATCGAG CAGCGC CTCGATG-CTCTCCGCGGTGC TTTCCAGGTGACATT  60 238
JJQ57_RS30495 6422182 .. 6422200 + -13.8  -4.09243   TCGGGCAATAAAAAA             CCCCGCCT TTT GGGCGGGG             TTTTGCAGACCTCTA  90 56
         dnr NONE
JJQ57_RS30505 6423754 .. 6423789 +  -7.4  -2.78384   GCTGCCCGCCGAGCA    CCTGGCT-GGCCCGGCG GAT CGCCGCGCCCATCCGCG    TGTAGTAGCCCGGCG  51 313
        nirS NONE
        nirM NONE
        nirC NONE
        nirF NONE
JJQ57_RS30560 NONE
JJQ57_RS30565 NONE
JJQ57_RS30570 NONE
JJQ57_RS30575 NONE
        nirJ NONE
        cobA NONE
        nirN 6438348 .. 6438364 + -15.1  -3.70902   GGCGCCCAGAAAAAA              GCCCCGC ATC GCGGGGC              TTTCCGTCTCAGGCG  90 319
JJQ57_RS30670 6455474 .. 6455497 +  -6.6  -2.71268   CTCCGCAGCAAAGCA          GCAGCCGG CGCTGAAC CCGGCGGC           TAATCTCTGATCCAA  49 12
JJQ57_RS30675 6455942 .. 6455975 + -11.7  -2.73721   GCGCGCCTGCGGTTG     CATGGTGCGACATCC GCCA GGAAGTCCCGCCATG      TCGTTCCCGCTTCGT  66 133
JJQ57_RS30680 NONE
JJQ57_RS30685 NONE
JJQ57_RS30690 6457891 .. 6457906 + -11.8  -3.06796   CGCCGCTGTGAACCT              GCCGGC CCGC GCCGGC               TTGCGTACACTAGGG  68 30
JJQ57_RS30695 6458984 .. 6459005 +  -4.3  -4.07687   CGCGGGGCAGGCGAG           GGAACGGCA AGTG TGCCGGTGC            TTTTCCGCGGGAACT  61 87
        rarD 6460126 .. 6460162 +  -2.2  -3.40403   CACCCCAGGCTTTTC    CACAGGTTCATGCACG TACTT TGTGCATAGACCTGCC    TTCTCCTCCCCGCAG  47 130
JJQ57_RS30715 6464211 .. 6464228 + -14.1  -4.20981   GCAGCGCAACGAAAA             GCCGCCC CGAG GGGCGGC              TTTCTCATTTCTTCG  93 51
JJQ57_RS30730 6466573 .. 6466583 +  -2.4  -3.04144   AAAAGCTGGCGGATA                 TCGC CAG GCGC                 TATTCGCCCTACCCC  41 40
JJQ57_RS30740 6468167 .. 6468189 +  -4.8  -4.11394   GGCGCGGCGGTAACA           CTGGGCACAA TTA TTGTGCACAA           TTTTCCCAATACGCT  65 65
JJQ57_RS30745 6470348 .. 6470365 +    -4  -4.08767   GCGAGGATCAGCCAG             GCGCGC GAGGCG GCGAGC              TTTTCCGCCAGTCCG  61 171
JJQ57_RS30765 NONE
JJQ57_RS30770 6473805 .. 6473846 +  -2.7  -4.60487   TGGTGCCACGCTGAA CCGAACGGGCCGGCGAAAA ATTT TTCCCGCCGGCCCTATCAC  TTTTTCCGACTCGTC  68 27
        fiuA 6476333 .. 6476343 +  -8.2  -3.30124   CGCAACGGCGGATAA                 CCGC TTC GCGG                 TTATCCGCCCTACCG  60 58
JJQ57_RS30785 6478345 .. 6478366 +  -2.2  -2.70932   GCCTGCCGCCGATCG           TCTG-CGCG TCGTC CGCGACTGA           TCCTTCCAAGGAGCC  39 4
JJQ57_RS30790 6479138 .. 6479148 +  -2.4  -3.51232   GGTCGTCGCGCAGGC                 CGAC ATA GCCG                 TTCATTTCCAGCACA  48 158
JJQ57_RS30825 6484739 .. 6484749 +  -8.2  -3.29511   TCGTAGGGCGGATAA                 CCGC AAC GCGG                 TTATCCGCCGATCCG  60 65
        mdtD 6490139 .. 6490159 +  -4.6  -3.84406   CCCCGGCTGGCGCTG           GCCGC-CGG ACTG CCGCGCGGG            TTCTTCTACTGAGCG  60 102
        dbpA 6492803 .. 6492827 + -11.4  -2.52464   GCTCGCCGGGCCCGC         TCCGGCGCGCG ATAT CGC-CGCCGGG          TAACTTCCGGCGCGG  62 55
        yccS 6495512 .. 6495524 +  -7.7  -3.28924   GGCGTTGGCGAAGCT                GGTCA CGT TGACC                TTCTGCAGACGGCTG  56 301
JJQ57_RS30880 6500233 .. 6500267 +  -2.9  -2.82023   CGGCCGCTCGTCGCG    CC-GCTCAGGGCAGGAC TTC GTCTT-CCTTGAACTGG    TCCTTGATGTAGGTG  40 64
JJQ57_RS30895 6503151 .. 6503187 + -17.3  -2.90349   CGGTAGCGCGCCGGC    CGCCGGGGAGACGGG CAAGGAA CCCGTCTTCCCGGCC    ATTTCCGTTTCCAGC  87 73
JJQ57_RS30900 6504569 .. 6504579 +  -8.2  -3.63515   CGCATCGGCGGATAA                 CGCC CCT GGCG                 TTATTCGCCCTACCG  65 148
        hydA 6509536 .. 6509583 +    -9  -3.05384   GAGCGCTGATCCTTC CCGCAATACCGGACCGGCCCGT AGAG GCCGGACGGTGCCGTATTGCCG TTGACTGCCCCGAGA  60 32
JJQ57_RS30920 NONE
        preA 6512330 .. 6512360 +  -9.7  -2.89564   GGCACGCTTCCTGCG      TGCCGCTGCG-GTC CGAC GACGCGCAACGGCG       TCTGTCGGATCGACC  58 90
        codB NONE
JJQ57_RS30935 6515198 .. 6515211 +  -5.9  -2.84723   TTTCCTCGACCCACT               GGCGG ATCT TCGCC                TCCTTCATCTTGGCC  48 265
JJQ57_RS30960 NONE
JJQ57_RS30965 NONE
        metF NONE
JJQ57_RS30975 6524477 .. 6524487 +  -5.4  -3.32769   CGAAGGTAGACAGGA                 GTTC GCA GAAC                 TTGGTGATTTCACAG  50 213
JJQ57_RS30980 6526512 .. 6526531 +   -15  -3.67597   GCGAGGATAAAAAAA            CGCCGACC CTAG GGTCGGCG             TTCTTGCATGGCGCG  85 78
JJQ57_RS31000 6533398 .. 6533414 +  -2.9  -2.57192   GCCGGCAGAACTGAA              GCGAATA GCC TGCTCGC              TGCCTTGGATTGCGT  39 137
        betT 6540809 .. 6540839 + -16.1  -2.77043   TGGTGCGCTGAGGGA      TGCG-GGGGCCGGC CAAT GCCGGCCCCTCGCC       GTTTCGCCTACTGGA  81 30
JJQ57_RS31045 6544928 .. 6544944 +  -5.7  -3.08798   CGAACTCGAGCCAGC              GCGCGTC GAC GCCGTGC              TCTTCGATCAACCGT  49 374
         rep 6548401 .. 6548435 + -12.8  -4.11216   TCGATTTTCACAAAA     GTGTCTTGCCCGATGC CTA GCCTCGGGCGAGGAAC     TTTTGCCGCTCCACG  89 62
JJQ57_RS31060 6550232 .. 6550268 + -10.8  -3.14931   GCCGGCAGCGGCGCG   GCC-CGCCTGCCACGGGG CCG CGCCG-GGCAGGCGCGGA   TTCCTGACCGCTCGA  67 41
JJQ57_RS31065 6550959 .. 6551016 +  -8.4  -3.14132   CTCGACTGAGCGCCA CTCAGCC-CCGCT-CTTCCTGGCTGGCC CGCA GGCCGGCCAGCAACAAGCGCTGGTAGAG TTCCTCGCGAAGCCC  58 32
        dadR 6561327 .. 6561342 +  -6.1  -4.52857   AGGACTCCCGGCATA              GACGG GAAACA CCGTC               TTTTCTGTACACGAT  74 67
JJQ57_RS31120 6562854 .. 6562885 + -12.3  -3.53224   GGAAAACTCCTAGAA      TTCGCACGACCGG GATGAG CCGGTCGTTCGAG       TTTCCACGGGAGATG  74 97
JJQ57_RS31125 6564658 .. 6564674 +  -2.1  -2.64616   GCGCGACATGGGCAT              TGGCCCG GAC CAGGGCA              TCGTCTCGGTAGCGC  38 226
JJQ57_RS31140 NONE
JJQ57_RS31145 6569290 .. 6569307 + -14.1  -5.24129   ATGCTTGTTACCCTT             GCCCGCC ACCT GGCGGGC              TTTTTTGTGCGCCAG 100 59
JJQ57_RS31160 6571972 .. 6571982 +  -8.2  -3.14564   CATCGAGCGGCGCCT                 GGGC TGA GCCC                 TTCGTCGAACGCTCA  58 265
       coaBC NONE
         dut NONE
JJQ57_RS31180 NONE
        argB 6578051 .. 6578082 + -21.6  -3.42354   GCGTCACTGATCGTC      CGGCCATGGCGCGC TCCG GCGCGCCATGGCGG       TTCTCCCTTAGCGTC 100 31
JJQ57_RS31195 6580715 .. 6580729 + -11.4  -3.08679   CCAGCGCCGGGATCT               GCACCG CGC CGGTGC               TCTTGAGTACCGGCG  66 404
JJQ57_RS31215 6584153 .. 6584174 +  -5.1  -3.02461   GAGCCGCGCGCGGTC           GGCGGCATAG GTT CT-TTCCGCC           TCTTCGCGGGCCTTC  47 47
         crc 6586271 .. 6586288 + -14.1  -4.66938   GTCAGATACGAAAAA             GCCGGCG CATG CGCCGGC              TTTTCTATTCCACGT 100 46
JJQ57_RS31245 6588495 .. 6588510 + -11.8  -2.54325   ACATCGAATGACCGG              CGGGCG CCTC CGCCCG               ATCTCTTTCCAACCC  65 30
         gmk 6589203 .. 6589228 +  -6.7   -4.4078   TTTTTAGACTATTCA         GTCCGCCCGGC AAAC GTCGGGCTCAC          TTTTCGTTACGAGGA  76 68
        rpoZ NONE
        spoT 6591663 .. 6591690 +  -5.4  -3.49993   CTCAAGGGAGTGATC        CGGATCACCCGC CTGC GCAGCTGACCCG         CTTTTTCCTGTGTCA  53 2
JJQ57_RS31265 NONE
JJQ57_RS31270 6593214 .. 6593249 +  -4.4  -3.60805   GCAGCCCGCGCAGAT    AGCCGCCGCGGGACGG GACG TCGCGCTGCGCCGGCA     TTTCCAGTCGCCTCT  52 325
        oxyR NONE
        recG 6598390 .. 6598403 +  -3.1   -3.4404   CACGGCCAGCAATAC               GGTCA AGTG TGATC                TATTTCGCTCTCGCT  49 14
JJQ57_RS31300 6599965 .. 6599980 + -11.8  -4.30719   CGGAGGAGATCGAAA              GCCGCC CTCA GGCGGC               TTTCTTCTCCGGAGC  91 90
        glcC 6608059 .. 6608076 +  -2.5  -2.82834   CGAACGTGCTACCCT             CGCCGCC TTCT GCCGCCG              TCTCGTAGTCCCGTC  40 72
JJQ57_RS31355 NONE
        ubiA 6609865 .. 6609882 + -12.7  -3.72576   GCACGCCGTCCTTCT             CGGTGGC CGGC GCCACCG              TTTCCTGGGCCAGCG  77 345
        phoB 6610824 .. 6610850 + -12.3  -3.60098   CAAGAGCTGACCCCG        CG-C-CCGGCCGC CCG GCGGCCGGAGTCG        TTTCCCCTGGACGGT  75 31
        phoR 6612284 .. 6612302 +    -3  -3.10597   GCAAGCGACGACACA             GCCCCTCA TTC TTAAGGGC             CTTTTGGCTACCGCA  43 87
JJQ57_RS31380 6613672 .. 6613692 + -19.7  -2.74784   CTCGACTGAGACGAG            CCGGCGCCG CCA CGGCGCCGG            TGACTTTTCAAGGCT  90 32
JJQ57_RS31445 6628759 .. 6628770 +  -7.2  -2.90075   CCACGTAATAAGCCG                GCCC CATC GGGC                 TCTGCTTGAGCAGCA  53 75
JJQ57_RS31455 6630670 .. 6630699 + -20.1  -3.56092   CGCCGGGGCTAGACG       CAGGAACGCCGGC TATC GCCGGCGTTCTTG        TTTGCGCGCTCCTCA 100 29
JJQ57_RS31475 6636586 .. 6636606 + -19.7  -4.77173   ATCAGGTGCGTACTT            GGCCCGGCG TTT CGCCGGGCC            TTTCTTTTCTGCCGC 100 69
JJQ57_RS31495 6641842 .. 6641862 +  -3.2  -5.26875   GGCCCGAGTGGAAAT            GCCGGG CTAAAGCCT TCCGGC            TTTTTTGATTGAACG  85 265
JJQ57_RS31500 6643132 .. 6643167 + -27.6  -3.28712   CGGATCTGACCGCGC    GTCCCTGCCCGCCCCG TCCA CGGGGCGGGCAGGGCC     TTGTCAGCCCCGCGG 100 32
JJQ57_RS31515 6646000 .. 6646011 +  -2.2  -2.70932   GGCCTCCAGAGGTAG                C-GCC AGC GGCTG                TCGTTGCAGCGCCGC  38 269
JJQ57_RS31545 6651817 .. 6651845 +  -9.5  -3.09803   GGCGCGCGCCGATCT       CGCCGAGGCGGC CGATCA GCCGCG-CGGCG        TATTCGATGGCATTC  60 479
JJQ57_RS31575 6657472 .. 6657483 +  -5.8  -4.07885   TTGACGCTTTCGGCA                CGAC CCTG GTCG                 TTTTCGGGCCGGGTC  65 141
JJQ57_RS31580 6658579 .. 6658602 + -10.2  -3.05463   CCATTCCCGACTCGT          CGCCTCTCCC TCCA GGGAGGGGCA           TTGCATCGCACCCAT  62 49
JJQ57_RS31585 NONE
        dgcA NONE
        dgcB NONE
JJQ57_RS31600 NONE
JJQ57_RS31605 6665570 .. 6665586 +  -4.5  -4.23647   CGTGGTGACGATAAA              TTATTGT ATT ACGATAA              TTTATTCCCTAGTTT  63 82
JJQ57_RS31610 NONE
JJQ57_RS31615 NONE
JJQ57_RS31620 NONE
JJQ57_RS31625 6667090 .. 6667102 +  -4.8  -3.68351   CCCCGGGCACTACTC                GCTG GGCGG CAGC                TTTCACTGGTGAAGC  58 1
JJQ57_RS31630 NONE
JJQ57_RS31635 6667852 .. 6667878 +   -10  -3.72695   AGGCATTGCCGTTGT         CGTCCTGGCGCC ACA GGCACCAGCGCG         TTTCCTCCGCCGGCT  70 147
        gbcB 6671795 .. 6671834 +  -4.8  -3.78953   GTCCGCTCTTGCACG  TCGAGCAGCAGCAGGCGCC ACT GGTCCC-GCTCCAGCTCGC  TTTCCTCGTAGCGCT  58 263
JJQ57_RS31675 NONE
JJQ57_RS31680 NONE
JJQ57_RS31685 NONE
JJQ57_RS31690 NONE
JJQ57_RS31695 NONE
JJQ57_RS31700 6685182 .. 6685202 +  -5.3  -2.91276   TTCCAGTGCAAAGCC            ACGCGGC CGTGGAC GCCGCGC            ATTTGTACCCACAAC  46 178
        fdhA 6686451 .. 6686474 + -19.6  -2.71364   ACCTCCGGCAACAAC          CGACGCGGCC CACG GGCCGCGTCG           TCGTTGGCGCCATCC  90 41
JJQ57_RS31710 6687576 .. 6687607 + -10.8  -2.78547   CCACCTTCACCCGCG      CCTTGTCGATGGCG TAGG CGGCATCGGCCAGG       TCATTGCTCACCTGC  60 126
        adhP 6691497 .. 6691518 + -15.1  -3.16971   GAGATGTGACCTGCG           GGGCGGCGT CCCG GCGCCGCCC            TTGCCTGTCTACTCG  83 32
        aspA 6694254 .. 6694283 +  -9.3  -5.41143   CCCTCTCTACACTCT       GA-GGGACACGGCG ACC TGCGGTGTCCCTTC       TTTTTTTCACCGCTC 100 244
JJQ57_RS31760 NONE
JJQ57_RS31765 6698671 .. 6698681 +  -2.4  -3.01712   CGGTGGGACGAAGGT                 CAGC AAC GCGG                 TCTTGAAGCGCCCGA  41 311
        pycR 6704567 .. 6704602 + -15.4  -3.08015   TCTTCATCACCTTCG    GCGACAGGCGCAGGCT GCGC AGGCTGCGCTTGACGC     TCTTGAGGTGGTTGA  78 345
JJQ57_RS31800 6706982 .. 6707018 +  -6.5  -2.70932   GATCCGGCTCAGGAT   CGCCCGGCGCGCG-CTC GGCTA GAGTCGCGCGCCCA-CG   TCGTTGCGAGCCCGA  49 51
        yegQ 6708453 .. 6708473 + -11.1  -4.12188   AGCAGGAACACCACG            TAGCCCCTG AAC CAGGGGCTC            TTTTCCAGGTAGTCG  81 47
        uvrD NONE
JJQ57_RS31830 6717103 .. 6717114 +  -2.2  -3.25823   ATAAGCCCGCTGAAT                GG-CG CTT CGACC                TTGGTATAAAGGCGA  45 37
JJQ57_RS31835 6718678 .. 6718705 +  -2.6  -3.34398   GACACATGCTGGCCG        GCTGAGGCTGAA CCGT TTCATCCGCAAC         TATTTCCAGCGCCCG  45 21
JJQ57_RS31840 6719306 .. 6719337 +  -7.4  -2.87132   CAGCCTGAACTGTAC     CGT-A-GGCCGCTC CTTACC GAGCGGCCTTCACG      TATCTGGAAGAAGCC  53 68
JJQ57_RS31890 NONE
JJQ57_RS31895 NONE
JJQ57_RS31900 NONE
JJQ57_RS31905 NONE
JJQ57_RS31910 6734520 .. 6734578 +  -3.8  -2.72344   CCACCGGAACAGTTC CGCTACAGCCGGGCGGAACAGTTGCCGG GGCCA CCG--AACTGTTCCGTCCAACTCCCGCG TGGTTGCCCCTGAGC  42 43
JJQ57_RS31915 6734911 .. 6734952 + -12.4  -2.60075   CACAGTTGGTTAGTC TCAGCGTTGACACGGCCGCG CGGA TGCGGCCG--TCTACGCTGA CTTCGTTCGGAGCAA  65 59
JJQ57_RS31920 6735385 .. 6735398 +  -3.1  -3.01712   TCCGTTAGCCTTGGC               GG-CTG TTC CAGTCC               TATTCCGCCCAACCC  43 120
JJQ57_RS31925 NONE
JJQ57_RS31930 NONE
JJQ57_RS31935 6738075 .. 6738099 +  -3.6  -3.63515   GCTCTTTCAGCGCCT         CGCAGA-CG GCGGATAA CGCTCTGCG          TTATTCGCCCTACAG  51 73
JJQ57_RS31945 NONE
JJQ57_RS31950 6740166 .. 6740185 +  -3.4  -3.02144   CGCCTGCTGACCGCA            CGCCGCAC GCCC GTCCGCCG             TCTTCCCCGGAGTGA  43 266
JJQ57_RS31955 NONE
JJQ57_RS31960 6742424 .. 6742452 +   -16  -4.18934   GCCTGGTCCGCGAGG        CGCCGGGCGATC AGCAG GATCGCCAGGCG        TTTGTTGGCGTGCTG  95 155
JJQ57_RS31980 6747328 .. 6747355 +  -3.4  -3.29854   GACATTAGCCGTTCT        GCGGGTAGGTTCG TCA TGAAGC-ATCCGC        TATTCTCGGTATTTT  46 33
JJQ57_RS31985 6749120 .. 6749130 +  -4.6  -3.43071   AGTTGATCGAGCAGC                 GCCG GGC TGGC                 TTCCTTGATCTCGCC  51 383
JJQ57_RS32000 NONE
        algB NONE
JJQ57_RS32030 6759900 .. 6759932 +  -8.3   -3.5032   AGGGCGGCGGTTTCC      AGGTCCGGCTCGC CATCGAA GCGGGCCGGACGG      TATTTCATCTGGAAA  62 100
JJQ57_RS32070 6767361 .. 6767419 + -10.9  -3.65522   TCATGATGTCCGCCG CGGTGCCCTGCAT-CGGCGCGTTGATCGC GGT GCGCTCGGCG-GCCTTGCGCATGGCACCG TTCTTCGAATGGATC  73 522
JJQ57_RS32080 6770266 .. 6770277 +  -2.2  -3.02144   CCTGGCGAGGCCGCG                CTGA CATG TCGG                 TGTTCACCCCACTCG  41 54
JJQ57_RS32085 6771346 .. 6771362 + -13.7  -2.73542   CAGCCCACCCCCGGC              CCGGCCA TCC TGGCCGG              TCGTTCGCCCTTCAA  72 150
         zur NONE
        znuC NONE
        znuB NONE
JJQ57_RS32120 NONE
JJQ57_RS32125 NONE
JJQ57_RS32130 NONE
JJQ57_RS32135 6781555 .. 6781573 +   -16  -4.98531   CCGCCCCTGGAAAAA             GCCCGGTC TTC GACCGGGC             TTTTTCGTTTCCGGC 100 55
        qapR NONE
JJQ57_RS32145 NONE
JJQ57_RS32150 NONE
JJQ57_RS32155 NONE
JJQ57_RS32160 6786807 .. 6786831 +  -5.5  -4.44548   GCCGACGAAATCGCT          GCGGCTGAGGC CAT GCCGCAGCATC          TTTTCGTTGAGTGTC  74 74
        poxA NONE
JJQ57_RS32180 6791946 .. 6791980 +  -7.7  -3.40522   GCCACTGCCCACGGT    GGTCACGGGCCAGGCG CAGG CGCC-GGCGCGCGACA     TTCTCGTCGAGCAGT  59 268
        pdxY 6793098 .. 6793110 +  -4.7  -3.83026   CCAAGGGTTCGTTTC                GACGC AGT GCGCC                TTTAGTCTCCGCCCC  60 8
JJQ57_RS32210 NONE
JJQ57_RS32230 NONE
JJQ57_RS32235 6802758 .. 6802768 +  -2.4  -3.07816   TAGAATCTCCACACG                 GGGC AGC GCAC                 TTGCCTACATCCGGA  41 269
JJQ57_RS32255 6806640 .. 6806651 +  -7.2  -3.31322   TACCCTGAAAAGTCG                GCGG TTTT CCGC                 TTATCCACGCTTCCG  58 134
JJQ57_RS32260 6808202 .. 6808233 + -20.2  -4.56597   CGGGCCTTTTTATCC      ACAGGACGGCGACC TTCG GGTCGCCGTCCTGC       TTTTTGGCGCGGCAA 100 73
JJQ57_RS32275 6811230 .. 6811247 + -11.3  -5.84381   GACTTTTTGGTGATA             GGCCATC TGCG GATGGCC              TTTTTTTATTCCTCG 100 125
JJQ57_RS32295 6814405 .. 6814419 + -11.4  -3.04263   TGTCGCGGCCCTGTA               GCGGCA GGT TGCCGC               TGTTGCCGATCAGGT  65 359
JJQ57_RS32305 NONE
JJQ57_RS32310 NONE
JJQ57_RS32315 6818112 .. 6818123 +  -3.6  -4.11216   GACGATTGCCAGGGA                CTGC CCCT GCGG                 TTTTCCCGCTGAAGA  61 2
JJQ57_RS32345 6825485 .. 6825497 +  -6.2  -3.17688   GGCTCCGCGAGCCGG                CGCC CCCTT GGCG                TTCGTCCGCTCATTC  51 341
JJQ57_RS32350 6826753 .. 6826775 + -11.9  -2.75022   CGAGCGCCGCGATCA           CCGGGGCCG CATGC CTGCCCCGG           CTTCTGTGTCAAAAG  66 44
JJQ57_RS32355 NONE
JJQ57_RS32360 NONE
JJQ57_RS32365 6831569 .. 6831591 +  -2.6  -4.58283   TCTTTTTGCCCAAGT           TCACTTGGGC TGC GTTCGAGTGC           TTTTTCCGGGCATTG  70 309
JJQ57_RS32375 6833968 .. 6833979 +  -7.2  -5.04325   CGTCCAGGAATGATG                CCGG ACGC CCGG                 TTTTTCTCCTTTCCG  93 85
        rpmH NONE
JJQ57_RS32490 6856120 .. 6856141 -  -4.3  -2.70979   CTTGAAGGAAACTGA           CAGTAGCAG ATCG CGGCTACGG            GATTGCCAGTGATGG  42 200
        yidC 6854290 .. 6854310 -   -14  -3.25942   ATCTCCGGATAGCAA            GACGCCCC TCGAG GGGGCGTC            TTGTTGTGGACAGTT  77 54
        mnmE 6852880 .. 6852895 - -10.4  -3.35679   CCTGGTTATCCACAA              CTCGGC GTGG GCCGAG               CCCCATTACTTGCCG  66 31
JJQ57_RS32475 6851708 .. 6851720 -  -4.7  -2.66272   GGGTAGGGAAATCCA                CCGCG CAC CTCGG                CCTGTTCAGAAGCAG  43 487
        mnmG 6849820 .. 6849830 -  -2.4  -3.32498   TACCGCAGACATCAA                 GCGC TCT GCTC                 CAGTTGGCGGCCAGA  45 11
        rsmG NONE
         soj NONE
JJQ57_RS32455 6847415 .. 6847430 - -11.8   -2.8547   AGCGCGCAGAGTATA              GGGGGG GAGT CCCCCC               TGTTCAACTGGCTGG  67 78
JJQ57_RS32450 NONE
        atpB NONE
        atpE 6845721 .. 6845744 - -10.4  -3.53012   TCGTTGTCCGTCAAA          CACTCAAATC GAAT GATTCGAGTG           ATTAGCCGGCGATTT  68 27
JJQ57_RS32435 NONE
JJQ57_RS32430 NONE
        atpA NONE
        atpG NONE
        atpD 6840765 .. 6840782 - -14.1  -2.62184   GCTTGCCTCACATGA             GCGCCCG TCGC CGGGCGC              ACAGGATTACAGTTT  71 32
JJQ57_RS32410 6840267 .. 6840286 - -13.6  -5.46698   TGCAAAACGAAAAAA            GGGTAGCC CACA GGCTACCC             TTTTCCCTGACACCG 100 61
        glmU NONE
JJQ57_RS32400 6838251 .. 6838265 -  -2.8  -3.11634   TTCGAGATCACTTAA               GTTTCG TTT CGAAAG               AAAAGTGTGCGAATC  44 74
JJQ57_RS32395 NONE
        glmS 6835471 .. 6835482 -  -4.4  -3.55071   TCACAGCGGTCCAAA                GGAT TCTG ATCC                 TAATCTGCCAGACCT  53 165
JJQ57_RS32385 6834068 .. 6834096 -  -3.1   -4.1774   AATAACGATAAAGAA        GTCGGTAGATC TGCTTAC GATCTACCCCC        ACTCTCTTTGCATGA  61 374
JJQ57_RS32370 6831267 .. 6831307 -  -8.3  -3.14931   CCCAGGTTCTAGCAA  CGCTGACGATGACTGCTAA TCC TCAGGAGTAACCGTCAGGG  TGGAGCCGTCCGGCA  58 0
JJQ57_RS32340 6823081 .. 6823127 - -11.6  -2.74019   GACAATCCGCAAGGA CCGATTG-CG-CGACCGGCTCC GCAAG GGAGCCGGTCGCCGGCGTTCAG GCGTACAGGTCGCGC  66 22
JJQ57_RS32335 6821995 .. 6822007 -  -5.5  -3.91897   GGGGCTACGGAGAAA                CGAGC CTC ACTCG                GGCAGTACGCCCTTC  62 19
JJQ57_RS32330 NONE
JJQ57_RS32325 NONE
JJQ57_RS32320 6817867 .. 6817877 -  -4.6  -3.01712   CCCTGGTGGCGAAGA                 CCAG CCA CCGG                 GTCGCCGAACTGTTC  45 328
JJQ57_RS32300 6813567 .. 6813581 -  -3.6  -4.35524   CTGGGAAATTTAAAA               CGTTAT ACT ATAACA               ATTAACACCACAATC  64 493
        dksA NONE
JJQ57_RS32285 NONE
JJQ57_RS32280 6811124 .. 6811134 -  -2.4  -4.57073   TAGCGCCGCGAAAAA                 GCCC TGA GCGC                 GTCATCAGCCTGTCA  68 174
JJQ57_RS32270 NONE
       tonB1 6808527 .. 6808544 -  -9.8   -5.7946   CCGGGAATAAAAAAA             CCGCGC TCGAAG GCGCGG              CTCTTTTCGTTGTCG 100 51
JJQ57_RS32250 6803495 .. 6803520 - -21.9  -5.01042   AACGGAAATGAAAAA         CCCCCGCTCCC TGGC GGGAGCGGGGG          TTTCGGCGGCCCCCC 100 64
JJQ57_RS32245 6802864 .. 6802879 - -11.8  -3.25823   TTTGTCGGAGACGAA              GCGCCG ACGG CGGCGC               GCAGGGCCTCCAGGC  72 107
JJQ57_RS32240 6802422 .. 6802451 -  -9.2  -3.05384   CGCGCGGCGATCGAA       CAGGACCTGGCC TACTTC GGCCAGTACCTG        CTGAACCTCCTGGAG  57 105
JJQ57_RS32225 NONE
JJQ57_RS32220 6798049 .. 6798070 -  -9.3  -3.63744   GCCGCGTGGAAAACA           CCGACGGCC AATC GGCCGCCCG            CTTCAATGACTGACC  68 63
JJQ57_RS32215 6797210 .. 6797250 - -21.3  -3.68827   CAGGGACGACTGAAA  CTTTTCCACAGGCCGCTCC AGC GGAGCGACCCGTGGAAAAT  CCACTCAGCGGCCAG 100 30
JJQ57_RS32205 6795513 .. 6795532 -   -10  -2.64472   GACGTTCGAAATGGA            TCACGGAC CCGC GCCCGTGA             CGGCAAGGCGGAAAG  59 314
JJQ57_RS32200 6793727 .. 6793746 -    -2  -2.88544   GTCCAGTCGTAGAGA            CGGCGCAA CATG TCAGGCCG             ACTGCGGCAGCGGTG  40 18
JJQ57_RS32195 6792660 .. 6792677 -  -4.7  -4.56597   TTCCTGCTGGAAAAA             GCCGCCG CGGT CGCCGAC              TACCTGTGCCCCAAC  72 501
JJQ57_RS32185 6791197 .. 6791219 -    -4  -3.54424   CCCTATGGCGGCAAA           CCCCAGCGCT TCA AGGCCTGGGA           GCACGACATGAGCCT  51 522
JJQ57_RS32170 NONE
JJQ57_RS32165 6786548 .. 6786587 -  -3.5  -3.15544   CCTGAGCGTGATCAA  CCACTACTACC-GCCG CCAGCGCTC CGGCCGGTGGTTGCGG  CATCTACTGTTCCCG  45 215
JJQ57_RS32100 6774834 .. 6774844 -  -2.4  -3.01791   ACGCCGCGCGCAAGA                 GGGC GCG GCCA                 TCAGTCACGGGTTTT  41 40
JJQ57_RS32095 NONE
JJQ57_RS32090 6771601 .. 6771642 -  -5.1  -3.39216   TTCGCATTGAAAAAC GCATG-CGGTTCGGCGTC TTGGGGT GAGGCCGAGCCGACATCC TGTCGAGGCCTCGTC  50 222
        polA 6766882 .. 6766916 -  -4.3  -5.81412   TCCAGGCAAAAAAAA     CCCCGAGCTTC GTATGGGGAGGGG GAAGTTCGGGG     TTCAAGTCCGGACCG 100 237
JJQ57_RS32065 NONE
JJQ57_RS32060 6765035 .. 6765052 -  -6.9  -5.08824   GGCGGACGCAAAAAA             GGGCAGC CGAG GCCACCC              TTTTTCATACATCTT  86 62
        dsbA NONE
JJQ57_RS32050 NONE
JJQ57_RS32045 6761329 .. 6761366 -  -6.9  -3.06915   AGCGAGCCGAGGCAA   CACCTGCAGGCGAGCCCG TCC CGAG-TCGCCGGAATGTG   CGCTGGTCGCCCTTC  51 39
JJQ57_RS32040 NONE
      ampDh2 6759549 .. 6759607 -  -6.7  -4.08692   CAACCTGCTGGAAAA CGCCCTG-CGCCATAGCAGCGAAGGCGG GCAGAT CCACCTGCAG-GCC-CGGCGCCAGGGCG ACCGGGTGCTGATCG  67 278
JJQ57_RS32020 NONE
JJQ57_RS32015 6755394 .. 6755437 -   -16  -2.78197   TTCTATATATAGAAG CGCGCCGGAAGGCAGCGA GACATCGG TGGCTCCCCTCCGGCGCG TTTTCGCCTGGCCCG  81 162
        gltP 6753480 .. 6753513 -  -9.4  -3.85698   TGCCGGCGCCAGAAA     CGCCGAGGCCCCGG ACGATG CCGGGGCCTCCTGG      GCGGGAAGCGGCCTT  74 39
JJQ57_RS32005 6752143 .. 6752194 - -10.8   -2.6927   AGGCCGGACAGATGA TCGGTACCCTGCGCTTCGACGTCAC CCA GTGACGTCGAAGC-CTGGCGACCTC AGGCGAAGAACCAGT  63 24
JJQ57_RS31995 6749418 .. 6749463 - -15.4   -3.2794   GTTGATCGACATCAA CGCCGC-CGCCGCAGCCCCGGC GGGA GCCGACGC-ACGGCATGCGGCG AAACGCCTCAGGCGT  84 33
JJQ57_RS31990 6748663 .. 6748675 -  -2.6  -4.18018   CCTGCGCATCGAAAA                GCCG CTATT CGAC                GACGACATGCTCTAC  62 118
JJQ57_RS31975 6744150 .. 6744191 -  -2.9  -4.32482   ACGGAGAAGTGAAAA CCTGGGGAGCGGTGACCG CGGCAGC CGATGACCTCTCGCC-GG AAGCTTGCGCGGACG  64 252
JJQ57_RS31970 NONE
        prfH 6742218 .. 6742250 - -11.2  -3.02511   TGGAGGCGCTGAACA     TCCGCATGCGCGGCG CCGC CGC-GCGCAAGCGGG      GCGAAGAGCCAGTGA  62 75
JJQ57_RS31940 6737703 .. 6737736 -  -8.7  -3.31144   CGGCCATCTGGACAA     GCCGGCCGGCGACCAG CGC CTGGAAGT-GGCCGGC     AAGACCTTCCAGCAG  58 424
JJQ57_RS31885 NONE
         rmd NONE
         gmd 6726441 .. 6726470 -  -9.3  -2.90496   CGCCGCCGGAAAGCA       CCACGGGAATCAGC ATG GCTTACTCCCG-GG       AAACGCGTCGCAGGT  58 15
JJQ57_RS31870 NONE
JJQ57_RS31865 NONE
JJQ57_RS31860 NONE
JJQ57_RS31855 NONE
JJQ57_RS31850 NONE
        wbpZ 6719222 .. 6719240 - -10.2  -3.09516   GCCGGCATCAGCGAA             GCCCAGCG CTA CGCCGAGC             TGAACAAGCCGTTCT  62 104
JJQ57_RS31820 NONE
JJQ57_RS31815 NONE
JJQ57_RS31810 6708164 .. 6708178 -  -5.6  -3.65046   GGTGGAGGTGAAGAA               CCGCTT CCA ACGCGG               CGACAGCGTCGAACT  57 272
        hexR NONE
JJQ57_RS31790 6704059 .. 6704073 -    -7  -3.21099   GCGGCGCACCAGGAA               CTGGCC AAC GGCCTG               CTGCGCGAACTACCG  52 153
JJQ57_RS31780 NONE
        oadA 6699800 .. 6699818 - -14.6  -5.61596   ATGCCGATAAAAAAA             GGGGAGCA TCA TGCTCCCC             CAGGGACTTTAACCG 100 51
         mtr 6697869 .. 6697927 - -10.1  -3.01712   GTTGCTGTGGGAATA CCTGGCCTA-CGGCCCGTTCGCCGAGCGC CCG GCGTTCGACGC-CTGGCTGGCCGGCCAGG CGGCCAGCCGCGACC  60 508
JJQ57_RS31755 NONE
JJQ57_RS31750 6693954 .. 6693991 -  -4.7  -4.26903   GGTACGCGAGGAAAA   GCTGCTGGACG-AAGCCA CCC TGGCCGACATCCTGCTGC   CGGAAAACATGATCG  66 433
JJQ57_RS31740 6691136 .. 6691158 -  -7.6  -3.13403   CGCCCGGCAGGAAGA           CCCGGTGGAG GTG CTCCAGCGCG           ACATCGGCGGCGCCC  54 394
        purE NONE
JJQ57_RS31725 6688458 .. 6688516 -  -4.3  -4.41548   GGACAGTGTAGAAAA GCCTTGGGTTCAGTGCCGCCCGCCAACC CAAG GATGGGCGGGCGGCAATCG-CTCACGCC TCGATCAGCGCCTCG  69 19
JJQ57_RS31720 6688120 .. 6688142 - -16.2    -3.794   GGCGAAGTGAGGAAA           CGCCGGCCCC GCG GGGGCCGGCC           AGAGCCATCAATTCT  93 33
JJQ57_RS31715 6687467 .. 6687483 -  -9.4  -3.54543   AGCGAGCCGCTGAAA              CGACCC TGAGC GGGTCG              GCGAGCGGACGGCGC  68 83
JJQ57_RS31670 NONE
JJQ57_RS31665 6675358 .. 6675385 - -13.4  -2.69207   GAGATGAGGAAAGAG        CGGCCGCCCC GGTTCATA GAGGCGGCCG         AGAGCGGACTCAGGC  72 35
JJQ57_RS31660 6671470 .. 6671483 -  -5.9  -3.43492   GGAGATGGAGCACAA               CGGCG GGAT CACCG                ACGAGGATGTCGCCG  55 93
        gbcA NONE
JJQ57_RS31645 NONE
JJQ57_RS31640 6667337 .. 6667376 -  -5.6  -4.23781   CCGAGGAAAACGAAA  CCCTGCAACTCTCCATGC TCGA GCAGGAAGAAAAGCAGAG   CGGCACCCAGGCCCG  69 376
         cls 6655082 .. 6655113 -  -9.4  -4.18018   GCTGGCTAGGGAAAA      GCTGCACGCCCGC GCGGTCG GCGGGCG-GCAGA      GGCGTCGCTCAGGAC  79 172
JJQ57_RS31565 NONE
JJQ57_RS31560 NONE
JJQ57_RS31555 6652491 .. 6652507 -  -4.3  -3.14132   TGCGCCGTCGAGGAA              GGGAACG ACC CGCTCAC              TCGTCGCCGGGCACG  47 22
        argE 6650979 .. 6650994 -  -2.5  -3.14564   CTATGGCGTGAGCAA              CCGCA AGCTGG TGCAG               GTGATCGGCGAGATG  43 324
JJQ57_RS31540 6649164 .. 6649190 - -19.4  -3.14132   TTCGGGGTGTACGAA         GCCCCGCCCGGC CGC GCCGGGCGGAAC         GGATAGGTGCGGGTT  93 39
JJQ57_RS31535 6648196 .. 6648207 -  -4.4  -2.93723   CGGTGACGAAGGACA                TGGA CATC TCCA                 GAGGTTGTTCCCGCC  44 65
JJQ57_RS31530 NONE
JJQ57_RS31525 NONE
JJQ57_RS31520 6645465 .. 6645494 - -10.6  -3.32844   GCTGGCACGCGACAA       GGCGCACCGCCG GCAGCA CAGCGGCGCGAC        CAAGATCACCATTCC  66 261
JJQ57_RS31510 6643554 .. 6643570 -  -2.1  -2.83449   ACACCGCCACAATCA              CCTCCAG CGG CTTGCGG              AATGCAGCGGACGGC  40 143
JJQ57_RS31505 6642884 .. 6642894 -  -2.4  -2.90194   AGTTGCTCAAGCAGA                 CGTC CAT GTCG                 ATCATCGAGGTGGCC  40 302
JJQ57_RS31490 6638813 .. 6638841 -  -2.2  -3.52472   AGAGCGGGAAATGAA        CGACCGGTCGCC TACTT GGCGAACGCCAG        CTTGGCCGCGGCTGC  47 8
        choW NONE
        choV 6636690 .. 6636746 - -16.6  -4.74453   GAACAGACGGAAAAA GCGCGGAGGATAAACGCGAATGCCCGGC AGC GCCGGGCATTCGCAGC-AGCC-CCGAGC GGGGCCGTGGGGGAT 100 40
        betI NONE
        betB 6632427 .. 6632450 - -10.2  -2.78384   TTTCTCGGCATGACA          CCGGCCGCGAC GCT GGCGCG-CCGG          TGTCTGGAAGTTCGG  60 108
        betA 6630676 .. 6630693 - -14.1  -3.20382   GGCTAGACGCAGGAA             CGCCGGC TATC GCCGGCG              TTCTTGTTTGCGCGC  76 44
JJQ57_RS31450 6628163 .. 6628180 -  -2.6  -4.82548   TAAAAAGAGATAAAA             CTCTCG AATTCA CGAGCG              TTACTTGCGTTGCTG  74 503
JJQ57_RS31440 6626539 .. 6626553 -  -2.8  -3.16564   GTGGGAGCTTATGAA               GAAGCT GAG ATCTTC               GATTAAGGAGGTGAT  44 29
JJQ57_RS31435 6626408 .. 6626418 -  -5.4  -2.81464   GGATCACGCAGCACA                 CCAA CAA TTGG                 TGGGTCTGGGCAGAT  44 23
JJQ57_RS31430 6626254 .. 6626291 - -10.1  -3.34398   GTTCTGGTGCAAAGA   CCAGAAATCAATGTTCA TTCA CGAACATTCATTTCTGA    GCTTTCGACGATTGT  66 46
JJQ57_RS31425 6623166 .. 6623187 -  -5.9  -3.33162   GACTTCACCTTACAA           CACACAATC ATCA GATTGTTTG            GGTGTTATATGGTCA  52 34
         rrf 6622900 .. 6622923 - -13.2  -4.67038   CGCGCAAAAGCAAAA          CCCCTGGTCA TCGC TAACCAGGGG           TTTTGGGATAGGAGC 100 39
        pstS 6621451 .. 6621478 -   -12  -4.22375   ACATGACGCAACAAA        GCCCGCCAGC-AG AGC CTCGCTGGCGGGA        AAGGCCGGCGGGTCC  86 109
JJQ57_RS31410 NONE
        pstA NONE
JJQ57_RS31400 6616510 .. 6616565 - -14.8  -2.81547   CGGTGACATCAACGA GCTA-CGGAGAGCGCCGGAGGCAGCGG TATCG CCGC-GCCTCCGG-ACGCGCCGCTAGC CGTAGCGGCCGGTGA  75 21
        phoU 6615700 .. 6615725 - -10.5  -4.15222   AGTCGCGCGAAGAAA         CAAGGCTCC AGGTCAAG GGAGCCTTG          CCTGCGGAAGATCAC  81 37
JJQ57_RS31390 6614711 .. 6614727 -  -2.2  -5.00884   ATCGTCGGGAAAAAA              CCCG CTCAGGCGC CGGG              AACGTAGTGCTTCTG  77 14
JJQ57_RS31385 6613671 .. 6613693 - -16.2  -2.64616   GCTCGACTGAGACGA           GCCGGCGCCG CCA CGGCGCCGGT           GACTTTTCAAGGCTC  80 32
JJQ57_RS31365 NONE
        glcD 6605560 .. 6605578 -  -3.8  -3.96148   CTGGCTCATCAGAAA             CGCTCC AGTTCGG GGAACG             GCAGTCGACCGTGGT  58 0
        glcE NONE
        glcF NONE
JJQ57_RS31330 6602808 .. 6602824 -  -5.8  -3.90856   AACGGGCCAACCAAA              GATGGG TGGTG CCCACC              GGTCGCCTCACAGCC  62 33
JJQ57_RS31325 6602494 .. 6602509 - -11.8   -5.1675   CCAGGCATGAAAAAA              GGCGGC CAGG GCCGCC               TTCTTCGCCGGCGAG 100 47
JJQ57_RS31320 NONE
JJQ57_RS31315 6600968 .. 6600981 -  -3.8  -3.34192   AACGGCCGGAACCAA               TGGC ATTCAA GCCA                TGAGGCCGGGTAACT  48 18
JJQ57_RS31310 6600466 .. 6600490 -   -15  -3.14211   AGCGTCTTCGACGAA          GCCCGGAGCC GCTCT GACTCCGGGC          TCTCGGCGGTCAGTT  80 35
JJQ57_RS31305 6599965 .. 6599980 - -11.8    -3.727   CGGAGGAGATCGAAA              GCCGCC CTCA GGCGGC               TTTCTTCTCCGGAGC  78 17
JJQ57_RS31285 6594394 .. 6594412 -  -4.4  -3.62597   GGGACGCGCCAACAA             CCGGTTGG CAG CCATCAGG             CGTCCCCGAGCACCG  53 21
JJQ57_RS31280 6593541 .. 6593570 -  -7.2  -3.03159   CGAACGCGGCGAACA       TGAAGGCCCCTCG AAACG CGAAGG-CCTCCA       GTCTGTGCAGCGCGG  54 63
JJQ57_RS31275 6592494 .. 6592504 -  -6.8  -2.73483   ACTGGACGGCAAGGA                 GCTG ATC CAGC                 AGGCCAGCGCCAACG  48 442
         rph NONE
JJQ57_RS31235 6586271 .. 6586288 - -14.1  -4.84527   GTCAGATACGAAAAA             GCCGGCG CATG CGCCGGC              TTTTCTATTCCACGT 100 46
        pyrE NONE
JJQ57_RS31220 6584046 .. 6584066 - -14.7  -2.93435   CGAACGAGCGACAGA            GCCAGCCCG TAC CGGACTGGC            TGCGCGAGAAGATCA  73 70
JJQ57_RS31210 6583000 .. 6583033 - -10.1  -3.14132   CGGTGCGCGGAGCAA     CTCCGCCAGCGCGGG GTTT CCCACCATGGCGGCG      AACGCACCGAGCGCT  64 96
JJQ57_RS31205 NONE
JJQ57_RS31200 6580351 .. 6580379 - -18.9  -3.35992   AGGCATCGGAACGAA        GCGGCAGCCCG GTATCCG CGGGCTGCCGC        CATCGACTAGGAAAA  93 53
JJQ57_RS31190 6577730 .. 6577749 -  -9.2  -3.41745   GTCCTACAACATCAA            CGCCGACC TGGT GGCCGGCA             AGGTGGCGGAAGCGC  63 366
        radC 6571529 .. 6571561 - -14.1  -2.57132   CCCGGCCTGGACAAG      CTGATTGCCGACGGC AAG GCCGCCAGCAGCCAG      GAACAACGCACCGGC  69 459
        rpmB NONE
        rpmG 6569353 .. 6569370 - -14.1  -4.98531   GCCGGAAATGAAAAA             GCCCGCC GGAT GGCGGGC              TTTTCGCAAGGTGCC 100 48
JJQ57_RS31135 6565694 .. 6565725 - -23.8  -2.93723   GGCGCACGAAGCACA      GCGGCCGGGCTTCC AGAA GGAAACCCGGCCGC       GGGTGTGGCTCGAGA 100 71
JJQ57_RS31130 6564040 .. 6564068 - -13.1  -3.01712   GGCGCTGCTGGAACA        TGGCGTGAAGCTC TAC GAGCTGCGCGCCA        ATCCCGACCAGCCGC  70 418
JJQ57_RS31110 6558040 .. 6558056 -  -4.4  -3.13299   GCAGGACAGCGAATA             GA-GCGC AGAG GCGCATC              GGGGGTTCTCCTGTA  47 45
JJQ57_RS31105 NONE
JJQ57_RS31100 6557441 .. 6557487 - -10.2  -4.82667   TCACGACAGGAAAAA TTCCGCGGACACTGC-CCGGCC CTTGC GACCGGAGCAGCGTCC-CAGAG CGCTCGCGGAGCCTT 100 45
        dadA NONE
JJQ57_RS31090 6555494 .. 6555513 - -12.1  -5.44721   ATCAGGCGAAAAAAA            GCCCGGC TCTCCG GCCGGGC             CAGACAAAACTCAGG 100 36
         alr 6554250 .. 6554276 -  -7.3  -4.28774   GCAGGCAAGGCAAAA        CGAGGCCGCACA CGGC TG-GCGACCTCA         AGTCGGCCGTATCAT  76 109
JJQ57_RS31080 6553499 .. 6553524 -  -3.1  -2.78596   CACCCGGGCACGATA         CCGATCACTGCG GGC CGC-GCGGGCGG         GCGCAAGTATAACGG  40 162
JJQ57_RS31075 6552988 .. 6553003 - -11.8   -4.8048   CGCGGATACGAAAAA              GCCGCC AGGA GGCGGC               TTTTCGCGACACTGT 100 51
JJQ57_RS31070 6550848 .. 6550880 -  -6.9  -3.92075   ATCGTCATCGAGAAA      TCCTTCCAGGATGGC CGC GCCCTGCTGGAAAGC      GAAGGCTACCGGGTC  66 105
JJQ57_RS31050 6544243 .. 6544258 -  -6.8  -3.36327   CGACGGCACCCAGAA              CGTCGCC ATG GGCG-CG              ATCCGCGGTCTCAAG  56 258
JJQ57_RS31040 6541978 .. 6541996 -  -4.4  -3.60627   CGACCCTAGCGCAAA             CCCTGCGC CCG GCCCAGCG             ACGGCAGCGACCTGT  53 76
        pchP 6540653 .. 6540666 -  -4.5  -2.82015   GCGACACCGAGGACA               GCAGCG AGT CGC-GC               AAGTATTTCCGCGCC  44 206
JJQ57_RS31020 NONE
JJQ57_RS31015 NONE
JJQ57_RS31010 NONE
JJQ57_RS31005 6532762 .. 6532772 -  -2.4  -4.81249   CCTGAAATGGAAAAA                 CGGC TGC GCTG                 GTACTGGCGTAACCC  74 430
        mexA 6531147 .. 6531160 -  -2.4  -3.53437   CTATCAATGAAAAAC               TTCG ACATTA CGAA                TCCCCTTGATCAGCC  47 35
        mexB NONE
        oprM 6526512 .. 6526531 -   -15  -5.67063   GCGAGGATAAAAAAA            CGCCGACC CTAG GGTCGGCG             TTCTTGCATGGCGCG 100 49
JJQ57_RS30955 6519400 .. 6519425 -  -8.1  -3.34895   GCGATCCTGAAGCAA         GGCATGGTGGG CACG CCCGCCTCGCC          CGGATGGACAGCGGC  60 107
JJQ57_RS30950 6517195 .. 6517208 -  -5.9  -3.30441   GACGACTCCTCAGAA               GCGCG TCTG CACGC                TCAGCTCGAAGGTGC  52 6
JJQ57_RS30945 6515645 .. 6515695 -   -17   -3.4052   TGCGAATTCAACCAA GGCTACC-AGCAAATCCGGGCGT GCGGCG ACGCCCAGTCTTGCCAGGTAGCC CCTCTCAGCGACGCT  93 30
JJQ57_RS30940 6514484 .. 6514533 -  -4.7  -3.33815   ACTGTCGGGAATCAA CTTCGTCGCCAACCCGCTGGTGA ACAT CCACCTGCAGGGTCGCTTCGACG ACTACCCGAAGCGCC  49 487
JJQ57_RS30910 NONE
JJQ57_RS30905 6504608 .. 6504652 -  -8.4  -3.29144   CGACCCCGTGTAGAA GGCGGTCAATGCCGGCGCCTC GATG GAAGCGCCA-CTCAGGCCGCC AGGCGGCCGCCGGCG  60 16
JJQ57_RS30890 NONE
JJQ57_RS30885 6500199 .. 6500227 - -18.2  -3.34398   GGCTGTTCTGAAACA       CG-GCGGCCGGCA TGGG TGCCGGCCGCTCG        TCGCGCCGCTCAGGG  93 35
JJQ57_RS30870 6495971 .. 6496021 -  -6.1  -2.80016   TCGCAGCATGAAGGA GCGT-CCCGGGA-GTGGATCGCCAC AGC ATAGCCATCCCGACCCCGGGCACGC ATGTCCCCGTGTCGC  46 76
JJQ57_RS30865 6495201 .. 6495230 - -12.2  -3.53444   TTGCTGAAGAAGGAA      CTGGCC-GGC-GCG CAGC CGCTGCCAGGCCAG       CCCTAGCGCGCGCCG  74 28
JJQ57_RS30850 6490795 .. 6490814 - -13.6   -5.4505   CCGGGCAATAAAAAA            CCCGGATG CTTC CATCCGGG             TTCTTCGGGCTGGGG 100 51
JJQ57_RS30845 6490047 .. 6490070 -    -3  -4.11216   GGTCGATCCGGAAAA          GGACCCGGACC TCT AG-CCGGGCTC          GCGAGGACGAGGCGC  61 120
        clpG 6485380 .. 6485408 - -13.8  -3.16971   TCATGAGATATCGAA       CGCCCCGGCC-GC ATTC GCAGGCCGGGGTG        AGATTTCGACCGGCC  76 73
JJQ57_RS30830 6484663 .. 6484679 -  -5.8  -4.63932   CATGTGGGAAGAAAA              GGACGA ACGCA TCGCCC              GCTTGCGGCAACTGC  76 122
JJQ57_RS30820 NONE
        creB 6482369 .. 6482390 -  -4.3   -2.7558   GTAGACCAGAAAGAT           CCGAACGCC GAGC GGCATCAGG            CGTGGTCCGGGCTGT  42 21
        creC 6480893 .. 6480907 -  -2.1  -2.73124   GGTGATGGCGGAAAG              TCTGCG GCGC CGC-GA               TGGCGGGCTTCGGGT  39 80
        creD 6479472 .. 6479492 - -15.4  -2.71712   TTCCTCCTTGGAAAT            CGGCGGCG GCCGG CGCCGCCG            CCCTCGTCGTCAGGC  78 35
JJQ57_RS30800 NONE
JJQ57_RS30795 6478662 .. 6478704 -  -9.7  -2.52464   TCCCCCGCGAAGGCA GCGCCCGCTGGCGACGC CTGACCATC GCCTCGCTGGCGGACGC CGTCCTCGACGCCGC  54 289
JJQ57_RS30780 6475941 .. 6475973 -  -6.2  -5.16572   ACCGAAGTGAAAAAA     GGCCAGTACGCAGGC AACC GCCTGCA-ACAGGCG      CCGCGCAACCAGGCC  90 525
JJQ57_RS30760 6471301 .. 6471332 -  -6.5  -3.87627   GGTCTATATAAAATA      TGCCCGGACGCTGG ATCCA CCAGCG-CCGCGAA      GGTCTTATCGAGGCG  65 92
JJQ57_RS30755 6470834 .. 6470851 -  -9.1  -2.63715   ACTCACGGCAGACGA             CCGGGCA AGCA TGCCCGA              GCCTCAGGGCAGATG  56 29
JJQ57_RS30750 6469961 .. 6469971 -  -8.2   -3.7108   AGCTGTACACCGAAA                 GCCG CGC CGGC                 GCCTATCACTACGCG  65 290
JJQ57_RS30735 6466304 .. 6466315 -  -5.8  -4.33621   CAGCGAACGAAGAAA                GAGG TGAT CCTC                 CAGGGCCTCGGCTGG  72 347
        pcaD 6464713 .. 6464724 -  -5.8  -2.82208   AAAGGAGCGACGATA                GCCT AATC AGGC                 TGCGCCGAGAAAGCT  46 20
JJQ57_RS30720 6464211 .. 6464228 - -14.1  -4.42238   GCAGCGCAACGAAAA             GCCGCCC CGAG GGGCGGC              TTTCTCATTTCTTCG 100 30
JJQ57_RS30710 NONE
JJQ57_RS30705 6460506 .. 6460524 -  -2.5  -4.37092   AGGCTGCTCAGAAAA            CGAT-CAA ACCC TTGTATCG             CCCATGGATAAAGAC  62 212
JJQ57_RS30665 6453652 .. 6453691 -  -3.5  -4.44974   GGAAATGGCAGAAAA GC-TTGTCGCGAGGCTCGC CGAG GCGAGCGGCGCT-CAACGC  GGCGCCTTGATGCGG  67 19
JJQ57_RS30660 NONE
JJQ57_RS30655 6451978 .. 6451995 -  -3.3  -3.59979   GGCGTGCATCTCAAA             CCTCCTGC GCG GC-GGCGG             TCCGCTCGGCGAGCC  51 3
JJQ57_RS30650 NONE
JJQ57_RS30645 6449951 .. 6449965 -  -4.3  -4.20367   CCCTTCAACAAAGAA               TTCCA ATTGG TGGAA               CACAGCAAAGACCAG  63 186
        bioB 6448437 .. 6448455 - -10.2  -3.33815   AGCGGCTGCAACGAA             GGGACGGC GGC GCCCTCCC             TTCCAGTATGGTCAG  66 37
        bioF NONE
JJQ57_RS30625 NONE
        bioC NONE
        bioD 6444882 .. 6444896 -  -3.4  -3.05384   GTGGCTTCTATTCAA               GCAGAC TTG GCCGGC               GCTGGGTACCGCCCG  43 63
JJQ57_RS30610 6444561 .. 6444575 -  -2.1  -4.65933   CAGTCGGAAAAGAAA              GAGTCG GGGG CGAC-C               GCTGCCGGCCACCAG  68 45
JJQ57_RS30605 6442390 .. 6442407 - -14.1   -4.7497   CGCAGGCATGAAAAA             GCCCGCC GAAG GGCGGGC              TCTTTCTCACCTGGG 100 67
JJQ57_RS30600 6440335 .. 6440351 - -10.8  -4.76041   GACAGGCATGAAAAA              GCCCGC TTTTC GCGGGC              TCGAGCGAGTTCGCC 100 114
JJQ57_RS30595 6438348 .. 6438364 - -15.1  -5.24129   GGCGCCCAGAAAAAA              GCCCCGC ATC GCGGGGC              TTTCCGTCTCAGGCG 100 48
JJQ57_RS30535 6428027 .. 6428079 -  -6.2  -3.75024   GGCGAGGATGAAGAA CCACATCGCCAGGT--CGCCGGGCAG GCG CCGCTCGACGGTATCAGGCGACATGG AGATCGACGATGTCC  60 13
JJQ57_RS30530 NONE
JJQ57_RS30525 6427189 .. 6427199 -  -2.4  -3.16564   CGGCGATTCTAGGAA                 GCGG CGG CGGC                 GAACCCGCTTGATGG  43 66
        norC NONE
        norB NONE
JJQ57_RS30510 6423303 .. 6423327 -  -9.2  -3.72695   ATTGCCTCCATGAAA          CCGAAGGCGC GGAAA GCGCCTGCGA          ACAGTGCGGCATGCC  68 171
JJQ57_RS30490 NONE
JJQ57_RS30485 NONE
JJQ57_RS30480 NONE
JJQ57_RS30475 6418283 .. 6418317 -  -3.6  -5.88565   CCTAGAATAAAAAAA    GCGCCCCACAGGAC CAAAACGAC GTCC-G-GAGGCGC    ATGCGAGGACAGAGG 100 55
JJQ57_RS30465 6416036 .. 6416056 -  -8.1    -3.695   GGCAAATATTCGAAA            GGAGGCGGG AAG CCCCCCGCC            AGAGCGAAACTGGCG  69 202
JJQ57_RS30460 NONE
JJQ57_RS30455 6413930 .. 6413951 - -17.3  -4.25104   CGCTGGTGACGAAAA           GCCCGAGGC CTGT GCCTCGGGC            TTTTTTCATCGGTCG 100 108
JJQ57_RS30435 6410596 .. 6410606 -  -2.4  -3.19246   GGAACTGCAACTCAA                 GCTG GCG CCGC                 TCGTTCTGTAAAGGC  43 50
JJQ57_RS30430 6410096 .. 6410114 -   -16  -3.09516   GGGTCGATCACGGAA             GCGGCGGA TTA TCCGCCGC             CACCGCCGATTGATC  84 86
JJQ57_RS30425 6409079 .. 6409117 - -18.1  -3.78775   CCGGGCACCACCAAA   GGCGCCCCGCTCAGCGG TTGCG CCGCCAAGCAGGCCGCC   ATCGAGGCGAAGCTG 100 511
JJQ57_RS30415 6407290 .. 6407324 -  -8.6  -4.08216   CCACTTCCTGGAAAA     CGACGAAGCGCG GATCGGCCCGG CGCGCTTCCTCG     GCGCCACCCTGTGGA  72 475
JJQ57_RS30405 6405480 .. 6405497 - -14.1  -4.72272   CCGCGCGATGAAAAA             GCCCCGC TTCG GCGGGGC              TTTTTTCGTTTCCGG 100 46
         tkt NONE
JJQ57_RS30385 6399541 .. 6399583 -  -3.9  -3.31461   GACCTACCTCGACAA CCTCGCCCATGCCGCCCGCG AAGC CGCCGGCGCCA-GGCTGACG GTGCTCATAGAGCCG  47 387
         epd NONE
JJQ57_RS30370 6396680 .. 6396690 -  -2.4  -3.53012   TTCGTCGTCCTCAAA                 GGTG TGA CCCC                 CGAGGACGGCGAATG  47 57
JJQ57_RS30365 6396446 .. 6396456 -  -2.4  -4.41241   GAAACTGGCAGAAAA                 GCAC TAC GGGC                 ATTCCACCGGCTTTT  65 18
JJQ57_RS30360 6395873 .. 6395891 - -11.7  -3.36878   TTCAGTGATTCAGAA             GCCTGCC GCAGG GGCAGGC             CCGGTTCAAGTTCCT  72 82
         fba 6394727 .. 6394743 - -10.8  -3.04461   GACGGATGTGCAAGA              GCCCCG ACCAG CGGGGC              TCCCGTTCGAACGAA  66 46
JJQ57_RS30350 6393742 .. 6393765 -  -2.2  -4.15833   ACGACCAGGGTAAAA          GCATCCCGGC ACAC GCCGGCGTCC           CCCGCCACAACCAGG  59 476
JJQ57_RS30340 6392443 .. 6392464 -  -7.9  -3.02511   GCGAGCGTCCCAACA           GCGAGCTGA AGAC CCTGCTCGC            CGAGTTGTTCACCAA  53 353
JJQ57_RS30330 6390815 .. 6390856 - -12.1   -2.7535   TGGTGGAAGACAGCA GCACCGGCACCCGCGCCGC CCTC GCCGCGGGGATGCGGGTGA  TCGGCTTCGTCGGCG  65 185
JJQ57_RS30310 6388071 .. 6388092 -  -2.9  -3.33261   CTGGAACCTGTACAA           CTATGCCGCC CAC GGCGACG-AG           GCGTTGTCGCCGAGT  46 219
JJQ57_RS30300 6387380 .. 6387390 -  -8.2  -3.04144   CTTCCACGGCGAAGA                 CCCG TGG CGGG                 ACTTCACCGTGAAGG  55 70
JJQ57_RS30270 6381906 .. 6381928 - -10.6  -3.55444   TCTTCATGCTGGAAA           CGGCAGGT TTCCAGC ACCTGCCG           ATAGGTCTCTACCGT  70 408
        tsaD 6369865 .. 6369886 -  -3.5  -2.52676   CACCGCGCCAACTTA           CGCGATCTG TTCG CCGGCCGCG            AACGGCATTTCTAAT  39 118
        folB NONE
        folK 6367870 .. 6367892 -  -6.8  -3.16564   TCGGTATTGCAGCAA           TGCGCCCGCC ACC GGCAGCCGCT           CAGCGTACGCTGGGC  52 494
JJQ57_RS30140 NONE
JJQ57_RS30135 NONE
JJQ57_RS30130 6350921 .. 6350939 - -10.2  -2.87132   GTTGCCGCGGAGATA             CCGCGCGA TTT TCGCCCGG             CGCTGGAAGATATGG  59 277
JJQ57_RS30120 NONE
JJQ57_RS30115 6346888 .. 6346905 -  -2.5  -4.25848   AAGCCGCGAGCAAAA             CCTGGGC GAAC GCCCCTG              TCAGAGCAGGCGGTG  62 26
JJQ57_RS30110 6345700 .. 6345736 - -10.2  -3.69354   TTCGAGAAGGGCAAA   GGTTTGCGCGCCAGC GCTCTCCG GCTGGCGCGCAA-CG    GCCTCCTCAGCGCTT  74 32
        potA NONE
JJQ57_RS30100 6343230 .. 6343279 - -12.7  -3.56568   GAACGACCCTGGAAA GTGTGGAACGGTAGGAGGAGCCGC CGC GCGGCGGCCCCT-CCGGCCCTCAC TGGAGGGTCAGGCGA  77 44
JJQ57_RS30095 NONE
JJQ57_RS30090 6340944 .. 6340957 -  -4.5  -3.04398   TTTGGCGGTGAAAAT               GACGA CTTT TCGCC                GCAGCAGCCGACGCC  45 68
         rpe NONE
JJQ57_RS30080 6339354 .. 6339376 -  -6.9  -3.57615   TCAACAGGGTGCAAA          CGCGCGCCGG CTAT CCGGCG-GAG           GATGATGTCAGGCGC  59 33
JJQ57_RS30075 6337782 .. 6337807 - -20.5  -5.24129   GCCGGGCACAAAAAA         GGCGGATGGCG CAAA CGCCATCCGCC          TTTTTTTCTTCCGCC 100 51
JJQ57_RS30060 NONE
JJQ57_RS30055 6335341 .. 6335356 - -11.8  -5.65177   ACAGGCATAAAAAAA              CCGGCC CGAA GGCCGG               TTGGAAAACTCCAGG 100 66
JJQ57_RS30050 NONE
JJQ57_RS30045 NONE
JJQ57_RS30040 6333431 .. 6333448 - -14.1  -4.54727   CTCCGCAAACGAAAA             GGCCCGC TCGC GCGGGCC              GGTTGAATGTTCGAC 100 71
JJQ57_RS30035 NONE
JJQ57_RS30030 NONE
JJQ57_RS30025 NONE
JJQ57_RS30020 NONE
JJQ57_RS30015 6329028 .. 6329044 - -10.8  -4.90266   TCCATTAATGAAAAA              CCCCGC ACGGG GCGGGG              TTCAGGGGGTGATGA 100 27
JJQ57_RS30010 NONE
JJQ57_RS30005 NONE
JJQ57_RS30000 6326852 .. 6326888 - -21.5  -2.77235   GGAACTACTGAAGTA    GCGCGGGCGCCGCTCGC CTG GCGAACGGCGCCGTCGC    TCACTCCTCGCCCTC 100 105
JJQ57_RS29995 NONE
JJQ57_RS29990 NONE
JJQ57_RS29985 6323464 .. 6323479 - -11.8  -5.54907   TCCAGAAAAGAAAAA              CCCCGC CAAG GCGGGG               TTGCGGGTGAGCGGT 100 44
JJQ57_RS29980 NONE
JJQ57_RS29975 6321760 .. 6321793 -  -2.3  -3.23692   CAGCAGGACCAGCAA     CACG-GCCGGCAGG AGCAGAG CGAGCCGGCTCATG     ACAGCACCGCCCTGG  43 21
JJQ57_RS29970 NONE
JJQ57_RS29965 6321147 .. 6321168 - -15.9  -3.34344   GGATGTCGGAAGGAA           GGCCGATCC GAGA GGATCGGCC            GAAAGGTTTAGCGGC  84 33
JJQ57_RS29960 NONE
        trpD NONE
        trpC 6318281 .. 6318327 - -21.9  -3.02511   GGCACCCGCTGAACA GCA-CCCATGAAAAAGGCCGGT CACA ACCGGCCTTTTTCATGGGGTTC GACAGCGCGGATCAG 100 37
JJQ57_RS29940 6316833 .. 6316860 -  -9.8  -3.17194   ATCTTCCGAACTGAA        CG-GCCGCTCGAC GGA ATCGCGCGGCACG        AAAAAAGGGGCGCAT  64 104
        speD 6315788 .. 6315804 - -13.7   -4.7497   CGCACGCATGAAAAA              GCCCGCT CGA AGCGGGC              TTTTTCTTTCTCGTG 100 46
JJQ57_RS29920 6312798 .. 6312829 -    -2  -3.85389   CGGGAAGAACTGAAA      GGGCGCGGCGTCAA GGTC TCGGTGCTGTGCCC       TGGGCCAACCCGTAC  54 321
JJQ57_RS29895 NONE
JJQ57_RS29890 NONE
JJQ57_RS29885 NONE
        erpA 6306667 .. 6306700 - -22.6  -3.53444   GTATCCCGCCTGAAA     CGAAAACGCCGCGC ATATAA GCGCGGCGTTTTCG      TAGCGGCCCCATCGA 100 43
JJQ57_RS29865 6302273 .. 6302290 -  -2.6  -4.82548   TAAAAAGAGATAAAA             CTCTCG AATTCA CGAGTG              TTACTTGCGTTGCTG  74 478
JJQ57_RS29860 6300649 .. 6300663 -  -2.8  -3.16564   GTGGGAGCTTATGAA               GAAGCT GAG ATCTTC               GATTAAGGAGGTGAT  44 29
JJQ57_RS29855 6300518 .. 6300528 -  -5.4  -2.81464   GGATCACGCAGCACA                 CCAA CAA TTGG                 TGGGTCTGGGCAGAT  44 23
JJQ57_RS29850 6300364 .. 6300401 - -10.1  -3.34398   GTTCTGGTGCAAAGA   CCAGAAATCAATGTTCA TTCA CGAACATTCATTTCTGA    GCTTTCGACGATTGT  66 46
JJQ57_RS29845 6297276 .. 6297297 -  -5.9  -3.33162   GACTTCACCTTACAA           CACACAATC ATCA GATTGTTTG            GGTGTTATATGGTCA  52 34
         rrf 6297004 .. 6297039 - -19.2  -4.07568   TTTCCGCGCGCAAAA    GCAAAACCCCTGGTCA TCGC TGACCAGGGGTTTTGG     GATAGGAGCTTGACG 100 33
JJQ57_RS29835 6295951 .. 6295965 -  -2.8  -2.94045   CGAGCTCAAGAATCA               TTGACG CAA CCTCAA               ACTAAGCTCCCCTCC  42 8
JJQ57_RS29830 NONE
JJQ57_RS29825 6294391 .. 6294407 -  -4.5  -3.01791   ACCTTGCTGTCAAGA              GTTTTCT CTT AAAAAAC              CTGAACTTAGGTTTC  45 110
JJQ57_RS29820 NONE
JJQ57_RS29815 6294147 .. 6294157 -  -5.4  -3.43109   TACATGAGCGAAACA                 CAAG CAA CTTG                 ACTGGAGCGGGTAGC  53 27
JJQ57_RS29810 6294029 .. 6294058 - -18.1  -3.44229   ACGCTACCATTAGAA       CAAGGGCAGATAT TTTC ATATCTGCCCTTG        GATAAATGGAGCTCA  95 32
         tuf 6292741 .. 6292766 - -12.6   -4.4078   TGGCCTGAAGCAAAA         TCAGGCCGAC CATTAT GCCGGCCTGA          GAGGGGAAGATCAAC 100 46
JJQ57_RS29800 6292635 .. 6292659 - -11.5  -4.63486   ATCTCGTGAAGAAAA          GCCAGATTTAC TTG GGAAATCTGGC          AGGCCAGGAGGGAAT  95 22
        secE NONE
        nusG 6291658 .. 6291680 - -20.6   -4.4767   CCAGTGACGACAAAA           CCCCGCAGCC TTG GGCTGCGGGG           TGAGGGATGCGTTTT 100 44
        rplK NONE
        rplA 6290420 .. 6290449 - -12.9  -3.06492   GCAGGGACCCCAATA       CCTGTGCAGCGGGC AGA ACCCGCTGCAC-GA       TTTCACTTAGGCTTC  71 32
        rplJ NONE
        rplL 6289240 .. 6289263 -   -16  -4.78149   CCCATAACGGAAAAA          GGCCGGTGGC AAAA GCCACCAGCC           ATCAGCCTTTCGCTT 100 72
        rpoB NONE
        rpoC 6280711 .. 6280736 - -19.1  -4.19624   CACCGTCAAGACAAA         GCCCCGGCTAT CGGG ATAGCCGGGGC          TTGTCGTTGATGCTT 100 39
        rpsL 6280173 .. 6280189 -  -2.2  -3.27475   CCCGGGACCATAACA              GTCAAG TTACG CCCGAC              CTTACTCTTATCGAC  45 63
        rpsG NONE
        fusA 6277485 .. 6277499 -  -2.1   -3.8647   AGCCACGACAGTAAA               CCTCT TACTT AAAGG               GCTGAATCAACCTTG  54 32
         tuf 6276241 .. 6276258 - -14.1  -5.32565   CAACGAACGAAAAAA             GGGGCCC CGAA GGGCCCC              TTTTCTGATGGCAGG 100 49
        rpsJ 6275799 .. 6275817 -  -9.6  -2.63301   CAGAGCGTTACACGA             CCAATGCC GAA GGCATTAG             CCGAGGCTGATCTGT  56 22
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ NONE
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN 6269461 .. 6269490 - -20.9  -4.16279   GAGATCACGCCAAAA       CGAATCAAGCCCC ATGA GGGGCTTGATTCG        ATGTCGCGATCAACG 100 68
        rpsH 6268963 .. 6268973 -  -6.8  -3.17146   TCCCCTTAGAACACA                 GTGC AGA GCAC                 TTCGCCGCCAACACC  53 5
        rplF NONE
        rplR 6268050 .. 6268061 -  -2.2  -2.59431   GTTTGCCATAACTTA                GAAC TCCA GTCC                 GCCTTCACGAGCGGC  38 11
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ 6265408 .. 6265431 - -15.3  -3.64441   ATAGCAAATAATCAA          CCCGGCAGC ACACTA GCTGCCGGG           TTATCACGCGTGGAT  86 46
        rpsM NONE
        rpsK NONE
        rpsD NONE
        rpoA NONE
        rplQ 6262427 .. 6262442 - -11.8   -5.4833   GCAGGTAATAAAAAA              CCGGGC CTGG GCCCGG               TTTCTTGTGCAGCAG 100 46
        katA 6260693 .. 6260714 - -15.9  -5.38951   AATGCAGATAAAAAA           GCCCCCTTC CTAG GAAGGGGGC            CGGGGGCCTCATCAG 100 45
         bfr 6260089 .. 6260115 - -15.9  -4.72272   GGCGCTCATGAAAAA        GCCCCTGCGGCC GTGA GGC-GCAGGGGC         TTTTTCGTATCCGCG 100 49
JJQ57_RS29580 NONE
         ssb 6255029 .. 6255068 -   -28  -4.07568   GGCGTCGCCTGAAAA  CGAAGACCCCCTGCGGCC CGAG GGCGGCAGGGGGTCTTCG   AAGGTCTGCCCGTGG 100 71
        pchR NONE
        pchE NONE
        pchF NONE
        pchG 6238790 .. 6238813 -  -5.2  -2.62616   GCAGGCGCCACAGCA          CCGGGGTCACG AGG CGTG-CTCCAG          CACCTGTTCCAGGCT  43 8
        pchH NONE
        pchI NONE
        fptA 6233118 .. 6233128 -  -4.6  -3.40403   GGCGCGGCATCAGAA                 CGCG CCC CGCA                 GGCTGACGTTGAAGC  53 9
JJQ57_RS29515 6232816 .. 6232842 -  -2.2  -2.84812   AGCGAGAGCAGGAGA        GGACGC-GCCG CCACTT CAACCGCGCCC         CGCCAGCAGCCACAG  40 14
JJQ57_RS29510 NONE
JJQ57_RS29505 6229890 .. 6229911 -  -7.9  -3.60925   CGGGAAAAAGAGGAA           TGGGCCGCG GCTT CGCGACCGA            AGACCGAGAAGAGCG  60 201
        phzM 6220211 .. 6220266 - -16.1  -2.52464   CGCCTGGGCAACGTA CGG--GCGCGCCTGCGCGCCGTCGAGGC GCA GTC-CGACGCCGCGCTGGCGCGCTACCA GCGCTCCCTGCTGCT  77 373
JJQ57_RS29425 6210552 .. 6210567 -  -3.9  -3.05384   GTCGCGCGCAGCGAA              CGGCC TCCCTC AGCCG               CGCAGTTCCTCGACC  45 19
JJQ57_RS29420 6209393 .. 6209421 - -18.8  -2.78798   AGGCCTGAGCGAAAG        GCGCGGCCCGCC CCGGC GGCGGGCCGCGG        GAATCAGGAACGCGC  87 29
        bfiS NONE
        bfiR 6201328 .. 6201379 -    -8  -3.16564   CGGCCAGGGCATGAA CCTGGCCA--TCGAGGACGCCAGC GCCCTG GCCGACGCCCTCGACCTGGCCTTG CGCGACGCCTGCGCG  54 267
JJQ57_RS29360 NONE
JJQ57_RS29355 6192254 .. 6192273 -  -7.8   -3.5861   AGCCAGAACAAGGAA            GC-CCGCGA TAT CCGCGGCGC            CAGCGCAGCGCTGCT  60 108
JJQ57_RS29340 6189016 .. 6189036 - -13.9  -2.52464   TCGCGCCGGAACGCA            CGCCGGCGC GAC GCTCCGGCG            GTTCAGACCGCCAGG  71 28
JJQ57_RS29320 6185699 .. 6185709 -  -8.2  -3.30243   AGGTAGGGCGCATAA                 CGCC AAC GGCG                 TTATCCGCCGTTTAT  60 111
JJQ57_RS29305 6181763 .. 6181787 -  -4.2  -4.56597   CCGCTCCTGGAAAAA         GGACGCCCTGC TCCA GCCGGA-GTCC          CGCGAGTGCTTCGAG  70 330
JJQ57_RS29285 6178936 .. 6178948 -  -4.1  -3.68222   GCTGAACTTCAACAA                CCTGT TCG ACAAG                TACTATTACAGCGGC  54 174
        dkgB 6175337 .. 6175351 -  -3.4  -3.78022   GGCATACCCAGGAAA               GCAACC ACA GGGCGC               AGCGCCTGTACGACT  56 137
JJQ57_RS29265 6172932 .. 6172968 -   -10  -3.81027   GGCAAGCAAGTGAAA    GGCGCGGGCGGAAGGC TTCAC GTCTTGCGCCCACGCT    CTTCCGTTCAAGGGA  74 390
JJQ57_RS29235 6166822 .. 6166870 - -10.9  -2.58767   GCAAGCAGCAACCGA CGCACTTCCGCG-GCAGCCCGC CGAGCC GCGCGCTGCTCGACGAGGTGCG CGAGCGCTGCTGGGC  59 264
JJQ57_RS29225 NONE
JJQ57_RS29220 6162464 .. 6162474 -  -6.8  -2.53995   ATCTACGCCAAGGCA                 GAGG CTC CCTC                 GCCTGTACCACGCCC  48 150
JJQ57_RS29215 6161441 .. 6161459 - -13.1  -2.87132   CGCGCTTGCGACACA             GCCCCGC GGCCG GCGGGGC             TTGCTTTACGAAACG  70 60
JJQ57_RS29180 6152985 .. 6153003 -  -5.8  -3.05384   CGGGGCGCGACCGAA             CGGGTTGC GCC GCTGCCCG             GAACGCTACAGGGAA  49 123
JJQ57_RS29175 6151799 .. 6151824 -  -6.1  -2.78384   TCGCCTGCGACGACA         GCCGCCA-CGAC ATC ATCGGCGACGGC         ATCGACATCGCCTTC  47 486
JJQ57_RS29135 6141046 .. 6141067 -  -8.6  -3.03771   CGACAGCGGCGAAGA           CGGCGCGG CGATCT CCGGGCCG            GTGGACAATCGCAAC  55 504
JJQ57_RS29125 6138688 .. 6138704 -  -2.1  -4.00868   GTATGCAGAAGGAAA              TCAACGG TTT CCGCCGT              GCAGGGCCAAGCCCA  57 9
        hpaR 6138153 .. 6138173 - -14.7  -2.87622   CACTGGGACAAGAAT            TGGCCGGCA TGA CGCCGGCCA            GTCGCTTCAGGGCTT  77 32
JJQ57_RS29095 NONE
JJQ57_RS29090 6130219 .. 6130232 -  -3.7  -4.11216   GGTCCAGGTGGAAAA               CCTGG AGGG CCTGG                CCAACCTCGACGCGA  61 442
        hpaA NONE
JJQ57_RS29040 6120989 .. 6121015 -  -3.8  -3.66378   TACAGGCCATGCAAA        GCAC-CG-ATCC CAAAC GGATGCGCGTGC        TTTCGGCGAAGGAAC  54 187
JJQ57_RS29015 6115089 .. 6115114 - -17.6  -4.21462   ACGCACGACGGAAAA         CGCCCCGGAC GCAAGG GTCCGGGGCG          GCGATGTGCGTTGGA 100 84
JJQ57_RS29010 6113784 .. 6113802 -  -6.7  -2.59154   GAAGACTAGATCAAG            CGGGCGGA TTCC TCCGCC-G             AATCATCCGACCCCA  48 52
JJQ57_RS29005 6109084 .. 6109110 -  -8.7  -3.73647   CGCATGGAGGAACAA        CTGGGC-ATCCG CCTG CGGATCGCCCCG         GCCTTCGGCGAGGTG  65 363
        ampR 6106227 .. 6106243 -  -2.2  -3.97388   AGAGCGCAGCAGAAA              TGGCTG TGCTC CATCCA              AAGCGCTGCTTGCCC  57 371
JJQ57_RS28970 6102616 .. 6102649 -  -9.5  -3.30441   CATGATCGGCGAGAA     GGCCGCCGACCTG ATCCTCGG CAAGCCGGCGCCC      CATGCGCCGACGGAA  61 93
JJQ57_RS28935 NONE
JJQ57_RS28930 6094035 .. 6094084 -  -9.8  -3.21099   CGCGCCGATGAGGAA GCGCGCCAGCGCGCGGCGCACCGG GTGG CCTGAGCGCCGCCCTC-AGCG-GC GGTGCGCCGGTGGGA  64 18
JJQ57_RS28915 NONE
         cmx NONE
JJQ57_RS28905 6089752 .. 6089762 -  -8.2  -2.78384   GCCTTGGCGACGACA                 GCCG TGG CGGC                 GCCCGCTTCATCCAC  54 335
JJQ57_RS28895 6088079 .. 6088089 -  -8.2  -3.23216   CGTGATCACCAGCAA                 CGGC CCG GCCG                 GACGCTGCGGGATCA  58 488
JJQ57_RS28860 NONE
       cupB2 6080781 .. 6080812 - -10.9  -3.07994   GCGAATCGCAGGGAA      CGAACGGCGATCC CTCCCT GTATCGCCATTCG       CAACAGGGCGACCTG  66 167
       cupB3 NONE
JJQ57_RS28845 6077296 .. 6077316 - -10.4  -3.64703   CTTCCTCCAGTGAAA            CCCCGCGA CCTAT TCGCAGGG            CCGTGCTACGGCAGG  70 70
JJQ57_RS28840 6074148 .. 6074174 - -11.5  -3.01712   TGCGCCTGCGGAAGA         GGGCCACACTC CAGGC GAGAGCGGCCC         CGGCCGGGAAGGGAG  66 68
JJQ57_RS28835 6072957 .. 6072973 - -13.7  -3.54935   GAAACGCCGGGGAAA              GAGCGGC GGC GCCGCTC              AGGGGAAGGTAAACG  81 24
JJQ57_RS28830 6071162 .. 6071205 - -10.2  -3.35813   GGCGACCTCAACCAA CGCGACTGCGCCGAACGCATC GGC GAGGCGCTGGGCG-AGCGGCG GATCGATCGCCTGAT  65 503
JJQ57_RS28805 6066140 .. 6066161 -  -7.2  -3.01791   ACCTGTTCCGCAAGA           CCGGCGCG CGCAGC CGCACCGA            GCTGGTGAAGCGACT  51 47
JJQ57_RS28795 6063742 .. 6063761 -  -4.9  -4.63218   GCGTGTCGAACAAAA            GGCTGCC GCGGAG GGCAGCG             AAAGAGCCGAACGAA  74 66
JJQ57_RS28790 NONE
JJQ57_RS28785 6061582 .. 6061592 -  -6.8  -3.86897   TTCAGGCGGGAGAAA                 GCAG GCG CTGC                 AATTGGGCGAAGGCG  65 1
        feaR 6060224 .. 6060242 -  -4.4  -3.12505   ATCTGATAGTGAATA             GCGACGCG GCG CACGCCCC             AAGGCAATGACATCC  47 240
JJQ57_RS28775 NONE
JJQ57_RS28770 6057983 .. 6057998 - -11.8  -4.74103   CCCCCAACGGAAAAA              GGCGCC TTCG GGCGCC               TTTTCTCATCCTGCG 100 409
JJQ57_RS28735 6053178 .. 6053190 - -10.5  -3.07962   GCGCAGAGCTGAAGA                GCCGC CTG GCGGC                CGATGCCGGCGACGA  62 273
        nrdR NONE
        ribD 6049489 .. 6049516 -    -4  -3.28791   ACCCCGCCCTGAGAA        CGTTACGGCCAT CGAG ATGGCCGTGTGG         CGTTTTACCACAGTT  48 84
JJQ57_RS28705 NONE
        ribB 6047270 .. 6047294 -   -15  -3.35597   CTCATCTGTTAAAGA         GC-CGGGGCGC CGTT GCGCCCCGAGC          GAAAAGGGTCGAAAG  82 95
        ribE NONE
        nusB 6046271 .. 6046292 -  -3.5  -2.53382   ATCAGCTCGAACTCA           CCCATGACG CCGC CGGCGCGGG            ATCAGCGCTTGCCGC  39 27
        thiL NONE
JJQ57_RS28680 NONE
JJQ57_RS28675 NONE
JJQ57_RS28670 NONE
        ribA 6042611 .. 6042656 - -10.3  -2.72344   CGCCAGTTGCAACCA CCAGGCGCGTC-CCAGCGCGCC GCG GGCTTGCTGGCGACTCACGTGG TTTCCGCCTCGCCCT  60 18
JJQ57_RS28660 6042228 .. 6042250 -  -8.4  -2.85216   GAGCAGCCAGAACGA           GCGCATCAAC CGA GTTGACGCGG           AATACGGTAGAGCCA  55 8
JJQ57_RS28655 6041332 .. 6041360 - -17.5  -2.62656   AAACCCAGCGACAAC        GGCGGATAACCGC GTT GCGGTTATTCGCC        CTCCCCCCCAATTGC  83 101
JJQ57_RS28635 6036809 .. 6036825 - -11.5   -4.4009   CCCCACCCCAGAAAA              GCCGGCC ACA AGCCGGC              TTTTTTAATGCCTCC  95 67
JJQ57_RS28590 6025979 .. 6025996 - -14.1  -4.17048   CCTCGCCGAAAAGAA             GCCCCGC AGCC GCGGGGC              TTTTTCATTCTCCCT  93 79
JJQ57_RS28570 6021940 .. 6021950 -  -8.2  -3.39908   GGTGCCGAAAAGACA                 CGCC CGC GGCG                 CCGCCCTTGCCGCCA  63 151
        eatR 6012820 .. 6012858 - -17.2  -2.78384   CGTCGCGGCATCAGA   CGACGCGGCGTCGGCGGG GTT CCCGCCGGCCTCGCGGCG   GCCCGCCTGGAGACG  84 50
         mpl NONE
        ubiX NONE
JJQ57_RS28520 6009944 .. 6009967 -    -8  -2.57132   CCGCGGCTGGACAAC          CCGGTCGGCC CGCT GGCCGAGCTG           CTGCCGCAACTCAAC  50 513
JJQ57_RS28500 NONE
JJQ57_RS28495 NONE
JJQ57_RS28490 6005185 .. 6005199 -  -2.7  -3.14931   GCCAGCCGCCAGCAA               CCGCC GCGCT GGCGC               CTGACCTGGGTACTG  44 309
JJQ57_RS28475 6002262 .. 6002288 -  -4.2  -3.01712   CGCTCGGCTGGAACA         TCCGCAGCTCGG CGT CTATGCGGCGGA         ACTGGTGGAACTCGG  44 259
JJQ57_RS28465 NONE
        nadD NONE
        rsfS NONE
        rlmH NONE
        mrdA NONE
        rodA NONE
        mltB NONE
JJQ57_RS28430 5993056 .. 5993067 -  -5.8     -3.94   CCAATGGTCAAACAA                TCCC TTGC GGGA                 ATTCCCTGCGTGAGT  62 47
JJQ57_RS28425 NONE
JJQ57_RS28420 5991516 .. 5991526 -  -6.8  -2.79183   TCGAGTCCCATCAGA                 GCAC CAT GTGC                 ACGCGTCCGGTCGCG  49 10
        lipB NONE
        lipA 5989826 .. 5989853 - -22.8  -5.27335   CTGCCCAAAGAAAAA        CGCCGCGTCCCT GTGC AGGGACGCGGCG         TCGGAGGCATTGGCG 100 50
JJQ57_RS28400 5987805 .. 5987815 -  -8.2  -3.30124   TCGTAGGGCGGATAA                 CGCC ACG GGCG                 TTATCCGCCGCTGCG  60 52
JJQ57_RS28390 5985671 .. 5985683 -  -6.9  -3.93262   GCGAAGAAAGGCAAA                GGCAG CTA CCGCC                GCGAAGCCTCCCGTA  66 188
JJQ57_RS28365 5980452 .. 5980464 -  -2.6  -3.34894   AACTTCCCGGAAAGA                GACC CTAGC GGCC                GTTGCCCGAACGGAA  45 17
JJQ57_RS28360 5979594 .. 5979614 - -15.4  -2.87132   CCCCTCCTGGATAGA            CCGGCGCC CCTGC GGCGCCGG            TTGCGTCTCAGCGGT  79 33
JJQ57_RS28330 5973127 .. 5973169 -  -9.1  -3.12749   CGAAGAATTGCAACA GGCGCTCGCCGCCTGCCAGCA GGT CGCCAAT-GGCGGCGA-CGCC GAGGCGCAATACGAA  59 407
        ladS 5967352 .. 5967374 -  -8.4  -2.75064   TTTCCCAGTGAATCA           CGCTTCAGGC TTT GCCTAAAGAG           ACATACAGGTCGCGC  54 73
JJQ57_RS28300 NONE
JJQ57_RS28295 NONE
JJQ57_RS28290 5964534 .. 5964556 -  -2.1  -3.69216   TTCGCATGGAAAACA          TCTTGCCTGT ACCG ACAGG-AAAA           CACAGCGCTTTTCTC  52 49
         amn 5962987 .. 5963020 - -22.5  -2.58544   CGCGAGGCGTAGAAG     CGCGCCCCGGTTTCC GCGC GGAAACCGGGGCGCC      TCCGATCAACGGAAC 100 31
JJQ57_RS28280 5962271 .. 5962313 -  -4.9  -3.57144   TTCGGCACGCCGAAA CCCG-GCGAGCAGTGGCGCG TCGCAC CGCGCAAC-G-TCGCTCAGG AGGCCGGGGCCACCA  52 21
JJQ57_RS28270 5960338 .. 5960373 - -10.2   -3.2614   CATGTCCGACAGCAA    GCTGCGCGCACTCGGC GCCA GCCATTCGCGCGCCGC     GCTGGATATCCGCCC  63 210
JJQ57_RS28250 5957977 .. 5957990 -  -2.3  -3.90112   TGGTCGGCAAGGAAA               CCGTC AGTT GACGC                TGTAGCCGCGCCCGC  54 15
        hrpB 5953551 .. 5953567 -  -7.2  -3.06737   GATCAACGGCGAACA              GCCCGC CCTGC GCGGAC              AGGTCTGCCAGTCGC  51 386
JJQ57_RS28215 5950480 .. 5950500 -  -8.1  -2.62184   CGCCGGCGCAGACGA            CGAGGGCGC GCC GGGCCCGCG            TCCGCTTTACGGCGA  50 150
JJQ57_RS28190 5946741 .. 5946753 -  -3.3  -4.18934   GATCAGGTGAACAAA                TCGTC GTC GCCGA                GGAAGCTGGAGTCGT  61 0
JJQ57_RS28185 5946106 .. 5946131 -    -4   -2.5366   GGAAAAAAGGAAACG         GACGGC-ATTC TAGCG GATTCGCCGTC         TCCCATCGTCCTCTG  41 53
JJQ57_RS28180 5944420 .. 5944464 -  -9.7  -2.52464   TCCTGCGTGAACTCA CCCCCGCCGCCACCTATGCCG AGC CGGCCCGCCTGGCGGCGGCGA TCAAGCGCCTGCCGC  54 293
        rocR 5941027 .. 5941039 -  -6.2  -4.08485   TGTATGGAAAGGAAA                CGCG TCCGG CGCG                AGGCCCGGCGTTCGG  65 71
JJQ57_RS28160 5937241 .. 5937252 -  -2.2  -4.07687   AGGCTTCGCGGAAAA                GGCT ACCC AACC                 GGAGTGTAGTCTTTT  57 118
JJQ57_RS28155 NONE
JJQ57_RS28150 NONE
JJQ57_RS28145 NONE
        tesB NONE
JJQ57_RS28135 5932757 .. 5932780 - -13.9  -5.14965   ATGCGCAGGAAAAAA          GCGCAGGAG CCTGGC CTCCTGCGC           TTTTTTCGTTTTCGG 100 86
JJQ57_RS28125 5931138 .. 5931153 -  -6.8  -3.05384   CCTTGCTCCATGCAA              CCCCGT CCCT ACAGGG               CAGCGCCCAGCAGAC  51 18
        tauA 5929889 .. 5929918 - -11.3   -4.1822   CCGTAGGGTAAGAAA       GCCTCCGCTCCGA CAGG CCGGGGCGGAGTC        GCGGAATTCAGCGCT  84 33
JJQ57_RS28115 NONE
JJQ57_RS28110 NONE
        tauD 5927181 .. 5927193 -  -3.4  -3.92832   AAACTCTCGAAACAA                TTGG ACCCG CCAA                GCTTAGGCGAGAGCG  56 154
JJQ57_RS28100 5925027 .. 5925047 -  -9.6  -4.26903   TTGAGTGCAGGAAAA            GGGGGCGC GCAGG GCGCCCCT            TCCCTCATCCTCCGT  83 101
        cioA NONE
        cioB NONE
JJQ57_RS28070 5917775 .. 5917798 - -11.8  -4.83169   ATCGGCGGACAAAAA          GA-AGCCCTCC AGC GGAGGGCTCTC          GGAAAAGGGCGCCGG 100 63
JJQ57_RS28060 5915359 .. 5915412 -  -3.5  -3.85698   GCCCTGCGCCAGAAA GGCGGCAAGCGCGGCGTCGCC-TCGC TGT GCATCGGCGGCGGCGAAGCCACCGCC GTGGCGGTCGAACTG  56 103
JJQ57_RS28050 5912336 .. 5912367 - -16.6  -4.07568   GGGCGGTCGCGAAAA      CGCGGAGACCAAGC GTTT GCTTGGCCTCCGGG       CGTTTCAGCGGTGTA 100 52
JJQ57_RS28045 NONE
JJQ57_RS28040 5908779 .. 5908809 - -19.9  -4.09685   CGCCACCCGCGAAAA       CGAAGAAACCGGC ACAAG GCCGGTTTCTTCG       TGGCTAGGAACGCCG 100 45
JJQ57_RS28035 5905434 .. 5905465 - -10.1  -3.16564   CGGCGACGGCATCAA      CGACGCC-CCGGCG CTGGC CGCCGCCGACGTCG      GCATCGCCATGGGTG  62 335
JJQ57_RS28025 5901477 .. 5901490 -  -2.3  -2.87132   CCGCGTGGTTACATA               TGCGC CTCG GCGTA                CTCCGCCAGCACCGA  40 5
JJQ57_RS28020 5900493 .. 5900525 -  -6.7  -3.55548   GAATATCTGCGCAAA      CTGCGCGAGCGGATC GAA GTCCCCCACGCGCTG      CCCGGTTCGCCCAAG  58 77
        moaC NONE
        moaD NONE
        moaE 5898365 .. 5898412 -   -12   -3.1855   CCTCCGAAGAGGTAA GCCG-GCGGCGCGAGGAGGTAG ACGTCA CT-CCTCCCAGCGCTGCGCGGC GGCCTGGTCGCTGCA  70 2
        moaB NONE
JJQ57_RS27985 5896419 .. 5896429 -  -8.2  -4.56597   TCCTCTGGCGAAAAA                 CGCG CTC CGCG                 GCAGTGGGCAACCCC  86 106
JJQ57_RS27980 NONE
JJQ57_RS27975 NONE
JJQ57_RS27970 5893837 .. 5893879 -  -6.4  -3.59979   TTTGGTCAGGGGAAA CGCCC-ATTCGCT-CCGC GCCGCCCAT GCGGCAACGAACCGGGCG TTGCCTCGCTGAAAA  59 135
JJQ57_RS27965 NONE
JJQ57_RS27960 5889744 .. 5889754 -  -8.2  -3.01712   TCCGTGGGGCGAATA                 CGCC ACC GGCG                 TTATCCGCCGGTATC  57 67
JJQ57_RS27925 5884169 .. 5884195 -  -9.2  -3.23853   GTTTCTGAAGGAAGA         CCGCGGGAGCGC ATG GCGCAACGGCGG         ACGATCGCCAGCGAT  61 87
JJQ57_RS27900 5878122 .. 5878145 - -11.6  -2.80816   CGGCCACCCACGAGA          CCCGCCGGGC CATG GCCGAGCGGG           CGCTGCAGAACTTCG  63 123
JJQ57_RS27885 NONE
JJQ57_RS27880 NONE
JJQ57_RS27875 5872066 .. 5872083 -  -2.6  -3.47322   GCTCACGATAACGAA             GAGGTG CGCTAC CGCCTC              AGCGGTAGATGGTCA  47 24
JJQ57_RS27870 5871100 .. 5871117 - -14.1  -4.98531   CGCCGAAACGAAAAA             GCCCGGC ATCC GCCGGGC              TTCTCCATGCCTCTT 100 45
JJQ57_RS27845 5865756 .. 5865776 - -16.1   -4.4078   GGCCGCCAACGAAAA            CGCCCGCCA TGA CGGCGGGCG            CTCGCCTTGCGAAGG 100 47
JJQ57_RS27790 NONE
       narK2 5855068 .. 5855078 -  -2.4  -2.76453   TTACAACGCTAATCA                 GGGG TTG CCGC                 GGGCTGCTGCCGACG  39 44
JJQ57_RS27780 NONE
        narH NONE
        narJ NONE
        narI NONE
JJQ57_RS27760 5847366 .. 5847394 -  -2.2    -4.011   GGAAGAGGGAAACAA        CGGCGCCGAAAC CTATT GCACCAGCGCCC        CATCCGCGCCCTCGA  57 9
        moaA 5846187 .. 5846216 -  -4.1  -3.84406   GGCCTACCAGAAGAA       CGGCC-TCGCCCTG GAT CCTGGCGAAGGCCC       GCTGGCGCTGGTCTC  58 141
JJQ57_RS27740 5842529 .. 5842554 - -18.3  -3.36557   AAGGAGCTGAAGGAA         GGCGGCGACTG ACGG CAGCCGCCGCC          GGCGAGCGGTCAGTC  93 35
JJQ57_RS27715 5835507 .. 5835528 -  -6.5  -3.18264   GCCCTCATCGATGAA           CAGCG-CGCC AAG GGCATCGCCG           CCGAGCGGATCATCC  51 379
JJQ57_RS27705 NONE
JJQ57_RS27700 5833018 .. 5833036 -  -3.1  -2.78384   TTCCTTGCGATGATA             GGGAC TTGCCAGGC GTCCC             CAGGCGGGAACGCCG  40 56
JJQ57_RS27695 5832490 .. 5832537 -  -2.4  -2.66634   GAGCTTAGGAGATTA TCCGCGCTTC-GGCCACCGACAG CCT CAGCCGGCCGCCGGATGGGCAGC CTGGTAGGCGGCCAG  38 2
JJQ57_RS27690 NONE
JJQ57_RS27685 NONE
JJQ57_RS27680 5830677 .. 5830722 - -23.3  -3.26319   AATCCGGGACATGAA GGGCAC-CCCATCGCCTGGCCC GAT GGGCCTGGCGATGGGCGCGCTC AATCCAGCCGGCACC 100 24
JJQ57_RS27675 NONE
JJQ57_RS27670 5828883 .. 5828894 -  -3.6  -4.13767   TGTCGCAGTGTAAAA                CGGA GTCC CCCG                 CAGGCGAAGGACTTT  61 40
JJQ57_RS27665 5827659 .. 5827702 -  -6.1  -3.64487   CTACATCCGTAACAA GGACTACGGCCTGT-CGCCGGA AAT CCCGGCGGACAAGC-GCA-CCC TCAACCAGTTCCGCC  59 232
JJQ57_RS27645 5823748 .. 5823758 -  -6.8  -3.31144   TCTCGACGTGCAGAA                 CCTG CGC CAGG                 GCCTGGCCGACCTCG  54 500
JJQ57_RS27635 5822573 .. 5822614 -  -5.8  -3.57144   TGGCGCAGGCGGAAA CGAGCCGTTCGAGGGGC GCCAGCCTG GCCCCTCGCG-GGCTCA GACCGGCGGCGTCTC  57 23
JJQ57_RS27620 5820010 .. 5820024 -  -2.7  -3.57144   GCCGCGACCCCGAAA               GCGGC GAACG GCTGC               TCTGGAACCGCCAGC  49 409
JJQ57_RS27585 5813115 .. 5813127 -  -3.3  -4.20696   CGAGCAACGGCAAAA                GATCG CCG CGCTC                TAACTCCAGCGCCCG  61 66
JJQ57_RS27560 5806679 .. 5806713 -  -3.6  -3.29471   GGCCCAGCATAGGAA    TCCTGCCGCGTCGGCG CCGCC CGCCAACG-GAC-GAA    GGCTACGCCGAATCG  46 28
JJQ57_RS27555 5805519 .. 5805531 -  -3.3  -2.62038   CGGAAAACGATCAAT                CCGGA CAC TCCTG                GGTTGCCAGGCTCTG  39 203
        lptF NONE
        lptG 5803293 .. 5803310 - -12.7  -4.10934   ACAAGGAAGCACAAA             GGCCACC CGTG GGTGGCC              TTTTTTCATACCCGG  89 54
JJQ57_RS27535 5800786 .. 5800811 -  -9.7  -5.95539   CTGCAAATAAAAAAA         GGCAGCG-CTGG AGT CGAGACGCTGCC         TTTTACCCGAGCTGC 100 214
        queA NONE
         tgt NONE
        yajC 5797874 .. 5797893 -  -3.4  -2.82516   TTGTTGAGCATGACA            CCGCCCGT TATG ACGCGGGG             CGCCTTGCGCGCCCC  40 61
        secD NONE
        secF 5795013 .. 5795031 - -12.4  -4.39166   GCGCAGATACGAAAA             CTCCCGCC AAA AGCGGGAG             TCCTCGAGTGACCGG 100 70
JJQ57_RS27500 5794294 .. 5794325 - -24.6  -4.26076   TCATCTCCATGAAAA      TGCACAAGGGCGCC CGCG GGCGCCCTTGTGCA       TCATTGCGACAGTCA 100 44
        trmJ NONE
        cysE 5791706 .. 5791737 -   -10  -3.97388   ACATGCTAGCAGAAA      GC-CGCCGGCCGCGC ATT ACGCGGCCGGATTGC      CATCCTCGTCCTTGA  78 9
        iscR NONE
JJQ57_RS27475 NONE
        iscU NONE
        iscA NONE
        hscB NONE
        hscA NONE
         fdx NONE
        iscX 5786016 .. 5786034 - -10.2  -5.10933   TTACCTAAAATAAAA             CCCGCGAA TTA TACGCGGG             TTCCCGGCAAATGCG 100 57
         ndk NONE
        rlmN NONE
        pilF NONE
JJQ57_RS27425 NONE
        ispG NONE
        hisS NONE
JJQ57_RS27410 NONE
        bamB 5778131 .. 5778157 -   -18  -4.51238   TTCAGAAAACACAAA         GGCCGCTGACGT CGG ACGGCAGCGGCC         GGACACTTGAAACCC 100 44
         der 5776568 .. 5776593 - -16.1   -4.8622   GCGGCCAATGAAAAA         GGCCCGACAGG GATA CCCGCCGGGCC          TTTCGACGAAGGAAA 100 49
JJQ57_RS27395 NONE
JJQ57_RS27390 5774394 .. 5774414 -  -2.5  -3.05384   CGTTCCGGCACTCAA            GGATGGATT TCG AAGCGATCC            GCGTCCATGTAGGCC  41 1
JJQ57_RS27385 5773362 .. 5773387 - -11.7  -2.73364   GGGTTATCTCAACGA         GCGCGGCGTGG CCAT CCTCGCGGCGC          TCGACGAAGTGGCCG  62 307
JJQ57_RS27375 5771981 .. 5771998 -  -4.7  -3.82083   TCATGATAAGGCAAA             GCGCGGG CTGC CCCTCAC              ACCACCAGCATCACC  58 22
JJQ57_RS27370 5771559 .. 5771576 - -12.7  -5.28481   CACGGAAGGAAAAAA             GGGAGCC AGGC GGCTCCC              TTTTTTCATGGGCAT 100 58
JJQ57_RS27360 5768883 .. 5768909 -  -4.3  -3.01712   CCGGCGCGGCGAAGA        CGCGCCGGTGCC CCCA GGAAGCGGCG-G         CTATCGGATTGAAAG  45 44
JJQ57_RS27355 5766602 .. 5766629 -  -5.4  -3.07935   AGCGCACGTAGGCAA        GGCG-GGCCCCGC TGG ACGGGGCCTCGTT        GAAGGTTCAGAAGCT  47 32
JJQ57_RS27350 5764699 .. 5764718 - -12.1  -2.57274   GGTCAGAAGGAACAG            GGGGCGC GTCGAT GCGCCCC             TTTCATGACCAAGGG  65 463
JJQ57_RS27335 NONE
JJQ57_RS27330 5762608 .. 5762629 - -13.7  -2.78798   ACCTCGCACGCAAAG           GC-GGGGCGC CGG GCGCCCCTGC           TCGACACGGCGCTCA  72 38
JJQ57_RS27325 5761984 .. 5762007 -   -21   -2.9162   CAACCGCTGAAACGA          CGCCGCCCCG TACG CGGGGCGGCG           AGCGCTCAACCGACC  93 31
JJQ57_RS27315 5760006 .. 5760016 -  -8.2  -3.14211   AGCGCCTTCGACGAA                 GCCG TGC CGGC                 CTCCTACACCGCCTA  56 284
JJQ57_RS27275 5752177 .. 5752214 -  -8.5  -3.67597   GCTGTGATCGAAGAA  CTCAGCGGCGT-GCGCA GCGCGG TGCGCGAC-CCGCTGCG   CGACTTCATCGAGTT  65 131
        guaB 5746201 .. 5746233 - -12.7  -4.19953   TACGGAATTCGAAAA      CGACACGGGGCTG AATCGAA CAGCCCCGTGCAG      CACTCATTTCAATCA  89 44
        guaA 5744553 .. 5744570 - -12.7  -4.58773   CGGAGCAAACGAAAA             GGGCAGC CGAA GCTGCCC              TTTCCTCTCATCGGC 100 50
JJQ57_RS27240 NONE
        tadA 5742357 .. 5742367 -  -2.4  -3.40639   AATTCGACGAAGGAA                 GCGC GCG GCGA                 CTACGACTTTACGCC  46 160
JJQ57_RS27225 5740821 .. 5740838 - -14.1  -4.75404   AAATCCCATGAAAAA             GGCCGCC CTAT GGCGGCC              TCTTCCGGCAGCGAT 100 44
JJQ57_RS27220 5739907 .. 5739931 - -12.1  -3.40611   TGGACGTGAAGAAGA          TGCTGCCGCGC CTG GCGCAGAAGCA          GTGGTACGCCAAGAC  73 241
        purL NONE
JJQ57_RS27205 5734083 .. 5734095 -  -3.3   -3.9392   GCCGACGCCAAATAA                TGGCA CTT TGCCT                TGACATGATGAATAT  56 123
JJQ57_RS27200 5733656 .. 5733672 - -15.1  -4.93365   GCGGATAACGAAAAA              GGCGGCC ACT GGCCGCC              CTTCTTGCTTGTCCG 100 49
JJQ57_RS27160 NONE
JJQ57_RS27155 5723656 .. 5723676 -  -2.5  -2.53263   CGCAGGGCGAAGCCA           CCGGTCGC TCGTTC ACG-CCGG            GTCCTCGACGAGGTC  37 17
JJQ57_RS27150 5723466 .. 5723489 -  -4.5  -5.04868   GGAAATGAAAGAAAA          CGGAATCCGC TTCAG GCGGAA-CCG          CTGACCAGCCCTTGC  81 13
        purT NONE
JJQ57_RS27140 5721479 .. 5721527 -  -7.2  -2.59055   GAAACCCGCGACAAC GACCTCGGCGCAGTGTCCTGAG TCTCG CTCAGGCTACCGCGGCGCCGCC CTTCTCCCTCGCCGC  51 5
         ffh 5716072 .. 5716090 - -13.8   -3.6682   GCCGACGGAGCGAAA             CCGCCGGC GTG GCCAGCGG             CCGCGCGTCCGATCA  81 38
        rpsP NONE
        rimM NONE
        trmD 5714308 .. 5714322 -  -4.9  -3.01712   GCTGTGCTCCTAAGA               CCGGC AATCG GCCAG               CCATCGATACGTTAA  47 37
        rplS 5713905 .. 5713920 - -10.4  -5.32699   CCAAACATGAAAAAA              GCAGCC CTCG GGCTGC               TTTTCTCGGAGAAGA 100 47
JJQ57_RS27095 5713334 .. 5713349 - -10.4   -4.2349   CGGGGATATGGAAAA              GGCACC CCTG GGTGCC               TTCTTTCCGCCTGGC  81 41
        xerD 5709497 .. 5709509 -  -4.8  -3.28791   ACGCTTGTCGCAGAA                CGCT ACGAA AGCG                CCTCTTTTCGGATAG  50 64
        dsbC 5708638 .. 5708661 -  -6.7  -5.14626   ATGATGAAAACAAAA          GAGCCGC ACATTACGAA GCGGCTC           TTTATTAGTCAATTG  88 57
JJQ57_RS27070 NONE
JJQ57_RS27065 5705674 .. 5705692 - -13.1  -4.88711   AGAAGACATGAAAAA             GCCCGCC ATCAA GGCGGGC             TTTTTCCTTTCACGA 100 46
JJQ57_RS27055 5703798 .. 5703843 - -10.6  -2.78715   AACTGGGCGAGCATA CCGATGCCCT-GCTCGCCG-AGC TGG GCTACGAC-AGCGAGGGCATCGC CGCCCTGCGCCGGGA  60 240
JJQ57_RS27045 NONE
JJQ57_RS27040 5700973 .. 5701000 - -11.3  -4.58395   TCTATCCCTGAAAAA       CG-GGCCCGGACG CCTT CG-CCGGGCCGCG        GGCCTATCAGGCCTT  95 32
JJQ57_RS27035 NONE
JJQ57_RS27030 5698097 .. 5698113 -    -5   -3.6682   GGTCATCGATGGAAA              CCGGCC CGAGC GGCCTG              CCCCGGGCGCAGCCA  55 120
JJQ57_RS27025 NONE
JJQ57_RS27020 5692047 .. 5692073 -  -2.8  -3.66921   AAGTCTAACCTGAAA         CCCGCCCGCG TGCGGTC CGCCGGCCGA         CCGCCTGCCCTGCCT  51 59
JJQ57_RS27015 5691449 .. 5691478 -  -2.7  -3.93288   CTCGACGGAAGGAAA       CGGCGACGGCGATC AAC GCTCGCCCT-GCAG       CCATTCCAGCTGCAA  54 8
        recJ 5689663 .. 5689689 -  -7.8  -4.48072   ATAGCTAGCAGAAAA         GCAGGTGGCAGC TAG GTTGCCCCCAGC         CCCGGGACGCGCTCA  81 38
        lasB 5687861 .. 5687919 - -19.6  -3.01712   CCTCCTGGCGGAAGA CGGCTTGAGCGGCCCCGGCCGGCATTCC TTCCT GGAGTGCCGGCCGGGGCCAC-CGAGCT- TACAACGCGCTCGGG  93 25
JJQ57_RS27000 5686491 .. 5686541 -  -5.5  -3.05384   GCGGTCCGGAGCGAA CGTCGCGGGAGA-ATAGCATCATA TTGC CATTACGCAATATCTCCCGCGAAA CGCTCAGGATGATTT  49 127
JJQ57_RS26995 5685856 .. 5685886 -  -9.6  -2.78463   AGGGGCCGCAGCAGA       GCTACCTGCTGCTC AGC GAGCGACTGGCAGC       GGTCGCCCCCCACAT  55 243
JJQ57_RS26985 NONE
        armR 5684607 .. 5684621 -  -5.7  -3.95852   AGCCCAGGAATCAAA               CGATG TGTTC CATCG               CCCGCACCAATGGCA  62 56
JJQ57_RS26975 5682861 .. 5682889 -  -8.7  -3.12505   ACTGCAGATCGAAGA        CCTCCTCCTGGGC GAC GGCAAGGAGGTGG        TGAAGGGTGCGCTGA  56 399
JJQ57_RS26965 5680760 .. 5680816 -  -5.1  -4.21936   CGGAGAACGGCAAAA CCTTGCGCACGGTGAAGCGCACGCTG-CG CTA CGACGGCGAGCGCTAC-CCGTTCG-A-GG AGTATTCGGACTTCT  69 133
JJQ57_RS26950 5678105 .. 5678130 - -14.1  -3.29096   TGCATTAACCAGGAA         CGACTCGATGC CTGA GCATCGAATCG          CTCTTTCAACAGGTT  77 247
JJQ57_RS26945 5675974 .. 5676002 - -18.2  -3.03159   CGAAGGCCGCTAAGA       GCGACGGGGCGCC CAGG GGCGCCCCGTC-C        TCTTTCTCCGTCTCA  90 38
JJQ57_RS26935 5673319 .. 5673351 -  -2.5  -3.87641   AACACCCGCGAGAAA      TTCCTCGACCACCGC CGC GAGCTGGCCGAGCAC      GAATGGGCGCGGCTC  54 258
JJQ57_RS26900 5668085 .. 5668112 -  -6.8  -2.78384   TTCCTCCGGATGAGA        TGCGGCCGGACC TTCC GGCCCGGCCATC         GAAGCATGCCCTCGC  49 58
        phoP 5667388 .. 5667407 -  -8.6  -2.54896   TGCGCAGGGAACGGA            TCACCG-GC AGC GCTCGGTGA            ACAGGTAGCCCTGGC  53 6
JJQ57_RS26890 5665977 .. 5666010 -    -6  -3.51232   CCTGCGTCAAAGGAA     CTGCGCCA-GCCGAA CAGAC TTCAGCGTAGCGCGG     AAACACCTCAGACGT  55 60
JJQ57_RS26885 5662474 .. 5662509 -  -7.5  -2.80816   TGTCGATCCAGGACA    TCGCCGAGCAGCTCGG CTTTT CCGAGCC-CTCGGCCT    TCCATCGCGCGTTCA  52 97
        dctA 5659861 .. 5659877 - -10.8  -5.64274   CGAGGCATAAAAAAA              CCCGCC ACGAG GGCGGG              TTCGAAGGGCGGCAG 100 78
JJQ57_RS26865 5658102 .. 5658146 -    -2  -3.14211   AGGGTGCCCGACGAA GGCCGGCGC-CGAGGCGCCTTG CAG CAGGGCG-CTCATGGACCCACC GCCGGTTCCGGCAGG  43 13
JJQ57_RS26860 5657082 .. 5657100 -  -2.4  -2.70932   CGGCGCCCTCAATGA            CGCGAGC GCTCAG GCTCG-G             TTGACCGAATCGGTC  39 43
JJQ57_RS26855 NONE
JJQ57_RS26850 5654119 .. 5654138 -   -10  -3.04322   CCGAATGCCCGAACA            CCTCAACG CCCG CGTCGAGG             CCTGCTATCGGCAGG  60 494
        ttcA 5651645 .. 5651665 - -11.1  -3.88946   GACCGGAGAGAAGAA            CTGACCCGC GGC GCGGCTCAG            AGGTTCATCACGTCG  79 22
JJQ57_RS26825 5650518 .. 5650537 -  -5.6  -3.54459   CCAATGCGGTGGAAA            CCCCAGCG CCGG CACTGTGG             CTGACCAGCACGCTG  54 432
        ddaR NONE
JJQ57_RS26805 5646274 .. 5646285 -  -2.2  -2.94924   TTTTTATCGATAAAT                GTGA CTTA CCAC                 CTGCGGCATGATGTC  40 2
JJQ57_RS26800 5645552 .. 5645584 - -10.7  -3.72984   CGACAAGGAGTTAAA      CGCAATACTTAAAGT AAA ACTTTAAGTTTAGCG      CTTGCTCGTCAGGGC  76 20
JJQ57_RS26795 NONE
JJQ57_RS26790 5644036 .. 5644081 -  -3.9  -3.82084   CTTCAACACCAACAA CGGCCAGACCATGCGCGACGC CGCGGT GCGTGGC-CTGGGCCTGGC-G ATGCTGCCGCTGTTC  57 225
JJQ57_RS26780 5642383 .. 5642420 - -17.9  -4.18494   CACCTGGACGGAAAA   CGACACAAGGCAC-CCGA TGG TCGGAGTGCCTTGTGTCC   GGGACAGCGGCGAAG 100 46
JJQ57_RS26775 NONE
JJQ57_RS26770 5641309 .. 5641320 -  -7.2  -3.08464   TGACGAGGCATTCAA                CCGC GCAG GCGG                 CGCACCCATAGCTGC  54 10
JJQ57_RS26765 NONE
JJQ57_RS26760 NONE
        kefB 5637823 .. 5637846 - -18.2  -2.71144   CAGGCGTGGGAATCA          CCCATGCCGG CGTA CCGGCATGGG           TCGGGCGCTAGGACG  86 33
JJQ57_RS26750 NONE
JJQ57_RS26670 5619306 .. 5619318 -  -4.7  -3.16117   ACAGCGAACGCAACA                GCCTG ACC CGGGC                ATTCTGCCAATGGCT  47 96
JJQ57_RS26660 NONE
        aguB NONE
JJQ57_RS26650 NONE
JJQ57_RS26645 5613918 .. 5613933 -  -5.4  -4.57569   CGACCTGCGGAAAAA              GCTGCAG CGC CTGC-GC              GTGGTGCTGGTCGGT  77 276
JJQ57_RS26635 NONE
JJQ57_RS26630 5611731 .. 5611745 - -12.8  -3.36878   GCCAGTGACCGACAA               GGCCGC GCC GCGGCC               GAAAGCCGAGGCCAG  73 241
JJQ57_RS26615 NONE
JJQ57_RS26610 NONE
JJQ57_RS26605 NONE
JJQ57_RS26600 5607037 .. 5607066 - -15.7  -3.09516   CTGGCGATCATCGAA       GGCGCGGCGCGCTG AGA CAGCGC-CTGCGCC       CGCTTCTCAGTGGCG  81 32
JJQ57_RS26590 5605233 .. 5605255 - -14.8  -2.57463   AAGGGCCTGGACAAG           GCCCAGGCCG GCT CGGCCTCGGC           GCTGATCTCGATGCT  71 344
JJQ57_RS26560 NONE
JJQ57_RS26555 5596368 .. 5596405 -  -5.3   -3.9009   AATCCACCGCAGAAA   GCTGCCCGGACGCACCG GAGG CGTTGCGGCCGACCCAC    GTGCTGCTGGTCGAC  63 396
JJQ57_RS26540 NONE
JJQ57_RS26535 NONE
JJQ57_RS26530 NONE
JJQ57_RS26525 5586509 .. 5586523 -  -3.6  -5.52384   GTTTCATGAAAAAAA               TTAAGC TGC ACTTAA               AACATATGCACGAAC  91 231
        aprA 5584722 .. 5584733 -  -7.2  -3.25079   GAACATCGGATAACA                CGGC GAAC GCCG                 CCCGCCATCCTCGCT  56 223
        aprI 5584203 .. 5584235 - -11.1  -2.78463   AGGGCGCCGAGCAGA      CCCGCCGCGCCAGCC ACG AGCTGTCGCGCCTGG      CCAACGACCTCAAGG  60 79
JJQ57_RS26505 5581333 .. 5581343 -  -8.2  -3.30124   CTGGATGGCGGATAA                 CGCC GTT GGCG                 CTATCCGCCCTACGC  60 89
JJQ57_RS26450 5569239 .. 5569255 -  -7.9  -2.90075   TCGCCGGCAAGCACA              TGCCCGG CCA CCGGGTA              ACGATGCCGGCGCAA  53 89
JJQ57_RS26435 5566705 .. 5566725 -  -8.9  -3.14132   CTCGCCGTCGACGAA            TGGCAGGCC GGC AGCCTGCCC            GACCACTACGCCGCC  56 454
JJQ57_RS26405 5560281 .. 5560301 -  -7.6  -3.05384   GGGCTCGCGAGCGAA           GCG-CTGGA CGCT TCCAGCCGC            GCCTTCCCATGCCGG  54 217
        btuB 5558294 .. 5558317 -  -8.1  -3.59979   CTCGTTCATTCGAAA          TACCCGGCC TCACAG GGCCTGGTA           GCGCACGCTGAGGTA  65 11
        cobO NONE
JJQ57_RS26390 NONE
        bluB NONE
JJQ57_RS26380 NONE
JJQ57_RS26375 NONE
JJQ57_RS26370 NONE
        cobU NONE
        cobT NONE
JJQ57_RS26355 NONE
JJQ57_RS26350 NONE
JJQ57_RS26340 5546812 .. 5546832 - -10.4  -3.62046   CGACCTGCTGAAGAA           CGAGCCGCG CATG CGCGGC-CG            CGCCCTGGTGCTGCT  67 402
JJQ57_RS26330 5544750 .. 5544766 -  -4.3  -3.33696   TTTGTCGTGAACGAA              GCGCCTC GGC GAGAGGC              TTCGTCGGTTGTCAG  48 37
JJQ57_RS26325 NONE
JJQ57_RS26320 5542748 .. 5542764 - -15.1  -3.81146   CGCGCCAACGAAGAA              GCCGGGC ATT GCCCGGC              TTTTTCATGCCTGGC  90 47
JJQ57_RS26300 5538698 .. 5538729 -  -7.1  -2.89683   AGTCGAGCCCATAGA      TCCAGTCGCCGGG CACATT CCCGGCGCCCAGT       GCGCCGCCTTCACCG  50 298
         rnd NONE
JJQ57_RS26280 5535170 .. 5535191 - -17.3  -2.72511   TTCACGTCGTGAAAG           TGGCGCCGG TAAG CCGGCGCCA            GCGGGGTACGGCTCG  84 43
JJQ57_RS26275 5534016 .. 5534033 - -12.7  -3.05384   CGCCGCCTGAGGGAA             CGCGGCT CAGT AGCCGCG              AGCGAAGTCCACCTC  71 14
JJQ57_RS26265 5532693 .. 5532705 -  -3.4  -2.62184   CCGGCCGGCACATGA                CTAC TTCAG GTAG                GAGCGCAGCGCGGTC  39 13
JJQ57_RS26260 5532112 .. 5532139 -  -2.9  -3.34398   GTCCCTTCGCAAATA        TGCG-AATGATA ATACA TATCATTTCACA        AGGTAAGGAAGTGCG  46 53
JJQ57_RS26255 NONE
JJQ57_RS26250 5530403 .. 5530438 - -13.2  -2.52543   ACTCTCCCCAAGTGA    CTGCTGGATGTCGCCG GCAG CGGCGACGGACAGCAG     AGAAGACGCAGCAGG  67 97
JJQ57_RS26230 5525283 .. 5525295 -  -6.3  -2.66106   TAGTGCAAGAATGGA                TTTCG TCG CGAAA                GGCTACAGGCGCGGC  48 28
JJQ57_RS26225 NONE
JJQ57_RS26220 NONE
JJQ57_RS26215 5523256 .. 5523266 -  -8.2  -3.06133   GAAGCGGTGACCGAA                 GCGG TGG CCGC                 CGAACTGGGCGTCGG  55 204
        phnW NONE
JJQ57_RS26200 5520383 .. 5520416 - -31.1  -4.37092   ACGCCGGTTAGAAAA     CCGAGGCCGCCGCGG TTGC CCGCGGCGGCCTCGG      CACAGACGTGGCTCA 100 38
JJQ57_RS26190 NONE
JJQ57_RS26185 5517419 .. 5517451 - -12.5  -3.33492   GGAGCTACTGGAGAA      CGGCGCGGCGGCCGG CGC CTGGCCGCTGCGCAA      CCCACGGCTGAACGC  71 175
JJQ57_RS26175 5515064 .. 5515074 -  -5.4  -3.64703   CTCGTTGGACCGAAA                 CTGA GCG TCAG                 TTATTACAATTCATT  55 231
        cyoA NONE
        cyoB NONE
        cyoC NONE
        cyoD NONE
JJQ57_RS26150 5509762 .. 5509785 - -13.8  -6.02914   CGCAGACAAAAAAAA          GCCCCGCCAA TCGA CCGGCGGGGC           TTTCCCTAAAGCGTG 100 46
JJQ57_RS26145 5507324 .. 5507348 - -18.6  -3.61894   AATCGCCGGGAAGAA          CCGGCGCCCA GGCAG TGGGCGCCGG          CTTCCATGGCCTGCC 100 46
JJQ57_RS26140 NONE
JJQ57_RS26135 5506284 .. 5506306 - -16.3  -4.72272   CGCCGGCAGGAAAAA           GCCCCTGCC GCGAT GGCAGGGGC           TTGCCGTTTTGGCCG 100 55
JJQ57_RS26130 NONE
        ilvA 5504089 .. 5504103 -  -3.4  -2.64735   AGCCGAGGGACATGA               CAGGGC CAT GTCCCG               CTGGCGGAGCGCCGC  39 41
JJQ57_RS26120 5501676 .. 5501686 -  -6.8  -2.52464   TCGGGGTGCAACTGA                 CAGC GCC GCTG                 GCGTGCCTGCTGGTG  47 443
JJQ57_RS26110 NONE
JJQ57_RS26105 5499841 .. 5499866 -   -19  -3.05596   CAGGGGCTGAGCGAA         GCGGCGGCCG CCGATC CGGCCGCCGC          CCTCCCCGGCGCAGC  91 50
JJQ57_RS26095 5496920 .. 5496964 -    -7  -3.53012   GGCGGCCGGTTGAAA CCCCTAGCCGACCGGACCGCG AGCG CGCGG-CCGGTTGGCGAAACA TGCCGCCACAACCTC  57 400
        pagP 5484991 .. 5485006 -    -6  -3.18264   CTGTCGAGTGACGAA              CCGCTC AGGA GCGCGG               CTCGGGGAACAGACG  51 81
JJQ57_RS26035 NONE
JJQ57_RS26030 5481987 .. 5482002 -  -5.4  -3.19463   GCGATGATCCACGAA              GCCAGCC TGC GGCTG-C              ACCTGACCGCCCTCG  49 422
JJQ57_RS26015 5479196 .. 5479210 -  -5.6  -5.00616   GCGGCGGGGAAAAAA               GCCCGC GGC GCAGAC               GAACGGTCGGCGCTC  85 107
JJQ57_RS26010 5478684 .. 5478696 - -10.5  -3.05715   AAGCCGGCCAGCGAA                GCGCC GCC GGCGC                ACAGCAGGGACAGGG  62 88
JJQ57_RS26005 NONE
JJQ57_RS26000 NONE
JJQ57_RS25980 NONE
JJQ57_RS25975 5472646 .. 5472674 -  -8.8  -3.10409   CACGAACTTATGCAA       GCGCGCCGAGGCT GTCC AGCACCG-CGCGC        TCAGGCGAAGCGCAC  57 26
JJQ57_RS25970 5471976 .. 5471990 -  -3.4  -3.26471   CGACTGCGAGAGCAA               CGCGCA GAT CGAGCG               CCTGGCCGAGGCCCT  46 165
        rhtA 5469655 .. 5469701 -    -9  -3.28712   GCGGGTCGGCCACAA CCTCGGCGCCGGCCTGCCGCGC GAC GCGCGCTTCGCCGCCGGCGTGG GGATGGCCGCGGCGC  61 460
JJQ57_RS25945 5467948 .. 5467968 - -19.7  -3.05384   CGCCCCGCTACTCAA            CCCCCCGGC CTT GCCGGGGGG            CACCGCCTCCGTCGG  93 41
JJQ57_RS25940 NONE
JJQ57_RS25935 NONE
JJQ57_RS25930 5463521 .. 5463575 -  -2.7  -3.27109   GGAACTCAATGAAGA CCCCGTTACCG-GCAGCCTCAACGCGA GCC TGGCGCAATGGCTGATCGGCA-CGGGA GTCATGCCCGGGCGC  46 323
JJQ57_RS25920 5461260 .. 5461270 -  -8.2  -3.22653   ACGAGTCGTAGAACA                 GGCC TCA GGCC                 TTCATCGCTGCCATC  58 19
JJQ57_RS25915 5460320 .. 5460351 -  -7.3  -3.54543   AGCCAGGGGGCGAAA      GCGGCCGGTAA TGAGCGATAG CTACCGGCCAC       AAGCGGGCAGTAGCC  62 67
JJQ57_RS25905 5457507 .. 5457517 -  -8.2  -3.22653   ACGAGTCGTAGAACA                 GGCC TCA GGCC                 TTCATCGCTGCCATC  58 19
JJQ57_RS25895 5455060 .. 5455091 -  -5.2   -2.5294   CATCGGCGAGAATAC      GCATGCAGACCTC CGCGAAC GAGG-CTGCACAC      TCTAGCAGGCCGAGG  43 212
        pdxB 5453445 .. 5453457 -  -6.2  -3.31461   CATCTACCTGGAGAA                CGCC AGCGA GGCG                CAGACCCGCGAGGCG  53 489
JJQ57_RS25880 5451363 .. 5451373 -  -6.8  -3.48276   TCGCCTCCCAGATAA                 CAGC CGC GCTG                 CTTGTTCACTGTCAC  57 136
JJQ57_RS25875 5450772 .. 5450812 -  -6.8  -4.11692   CATCGACGCGGAAAA CCCGCCGGCGCACCTGCTGC TGG GCAGC-GATGCACTGG-GGC TGGTGCGGCAGAAGC  67 192
JJQ57_RS25865 5448688 .. 5448707 -  -7.2  -3.28712   GTGCGTCCTGCACAA            CCG-GTTTC CGC GAAACGCGG            GGATCAAGGGCGGGA  58 317
JJQ57_RS25860 NONE
JJQ57_RS25855 5447883 .. 5447928 -  -5.1  -3.05384   GTGCGCCCCACGGAA TTGCGCGCCACCCTGCGCGCCC TGC GCGAGCGCCCGGAGGC-CGCCA GCCACGCTTCCTGAG  47 66
JJQ57_RS25845 5445503 .. 5445520 -    -4   -3.7331   AGCGCCATTAAAACA             GCCCCG GCGCCT CGGCGC              ATCCGCGGCGTGCCC  56 47
JJQ57_RS25840 5445048 .. 5445071 - -14.6  -3.21416   CAGGCCGACGACGAA          GCCG-GCAGCC TCT GGCTGCGCGGC          GAACTGGCGGAGTTG  76 74
JJQ57_RS25830 5440589 .. 5440638 -   -12  -2.76046   CGAATTCGAAGACGA GCGCATCG-CCGGCGTCTGGTCG GTGAT CGACAAGGCGGCGGTCGCCGCGC AGGTTCAGGCGACGC  62 79
JJQ57_RS25815 5438722 .. 5438734 -  -6.2  -3.18681   CGCCAAGCCTACGAA                CGCG CCAGC CGCG                TACCTGGGGCCGCTG  51 77
JJQ57_RS25805 5436051 .. 5436077 - -11.4  -2.64099   TCCTCGGAGGAGAAG         CGCCGCCGCCTG CAA CGGGAAGCGGCG         AAGAAGCTGATCCGC  61 264
JJQ57_RS25785 NONE
JJQ57_RS25780 5429539 .. 5429557 - -13.8  -2.62371   AGGCATGGAAGGAAG             CGGCCGCC AGC GGCGACCG             TCGGGCAGCGCCATT  71 187
JJQ57_RS25775 5428403 .. 5428418 -    -6  -3.08798   ACTGGTGATGCAATA              CGCCCG CGAA CTGGCG               CCGCATACGCCGCAG  51 204
JJQ57_RS25765 5426117 .. 5426159 - -15.4   -4.1721   ATCGATAGGCCAAAA CCGGGACTCTGGCCAGCGCC GCA GGCGGAGGCCAGAGCGTCGG GGAACCGGCTCAGCG 100 324
JJQ57_RS25725 5416279 .. 5416304 -  -6.7  -3.01924   CACCGTCGCCGAACA         CGGCGCGCTGA TCAT CCAGAGCGCGG          TGGAGGAAATGCTCA  51 475
JJQ57_RS25715 5414158 .. 5414179 -  -5.7  -4.19817   GCCAGGGACGGAAAA           CCGGCCGTG CGGA CACGGCAGC            ATCAAGTGCGCATCG  67 438
JJQ57_RS25705 5412124 .. 5412143 -  -4.2  -3.66018   GGAGCACTTCAACAA            CCTGCACGG CTG CC-TGCTGG            GCAATCGCCTGCTGC  54 368
JJQ57_RS25695 5410148 .. 5410173 -  -6.1  -3.53811   TTGACCTGTCTCAAA         CGGATGCTTGC AGTT GAAAGCATCTG          GCCGGGGAAAACTTT  57 91
JJQ57_RS25690 5407185 .. 5407200 -  -6.2  -3.65084   AAGCAAACGTTTAAA              TGTGAT CTAG ATCACA               TTTTATGCGAACTGA  57 190
JJQ57_RS25675 5405414 .. 5405429 - -11.8  -5.31456   TGAATGCACAAAAAA              CCCGCC GTTC GGCGGG               TTTTCTGTTTTTCGC 100 46
JJQ57_RS25655 5402756 .. 5402774 -    -8  -3.12847   AATCGTCACATCCAA             CCCGCCCG CTG CAGGCCGG             CGCAGCCGCCCTGCT  56 316
        aspS NONE
JJQ57_RS25635 5398804 .. 5398848 - -18.5   -4.3467   AGCTGGATACTAAAA GCCGGAAGCGGGGTTCGAACG CAT CAAGCGTACCCCACTTCCGGC TTCGCGTTATCGCTC 100 49
        ruvC 5398268 .. 5398288 -  -5.4  -3.64703   CTTTCCTTATTCAAA           GACGCAGGC GCCC GCC-ACGTC            GGCGTGCGCCCACCA  55 0
        ruvA 5397649 .. 5397662 -  -3.7  -2.64616   GCGCCACCTAGACCA               TGCCC TTCA GGGCC                TGGCGGATCATTTCT  41 4
        ruvB NONE
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA NONE
        tolB NONE
         pal NONE
        ybgF 5391142 .. 5391158 - -10.8  -5.27477   ATTCTAACGAAAAAA              CCCGCG ACAGG CGCGGG              TTTGTTCATCGGGAA 100 46
        queE NONE
        queC 5389557 .. 5389573 -  -2.1  -3.08133   TACCGACTGAGCTAA              CGACCCA ACG CGAGGCG              TATAATACTGATTTC  41 74
JJQ57_RS25570 5389354 .. 5389373 - -11.4  -4.84918   CTTAGAAACAGAAAA            GCCCACCT AAAA AGGCGGGC             TATTCCATATTGACA 100 139
JJQ57_RS25510 NONE
        sdiA 5368105 .. 5368121 - -10.1  -3.26473   CTAAAGGAGGATGAA              CGGCAGG CAA CCTGCCA              GATCTGGTAGGGCGC  66 63
        rhlI 5367261 .. 5367272 -  -2.2  -3.12874   AGAGAGACTACGCAA                GTCGG CAG CCG-C                GGCCAAATCCCGGAA  43 127
JJQ57_RS25495 5366375 .. 5366394 - -12.1  -3.33696   GCCGCCGCCAAGGAA            GGCCGCG CGGGCC CGCGGCC             AACCTCGCCGCCCCT  72 44
JJQ57_RS25490 NONE
        rarD 5364526 .. 5364562 - -10.8  -3.57144   TCGCCCAGGTCGAAA   GC-ACCCGCAAGCGCTG ATTC CGGCGCCTGCGGCTCGC    TCAGATGCCCCGCCG  73 26
JJQ57_RS25475 5361700 .. 5361717 - -12.7  -4.86621   ACCGTCAACGAAAAA             GGCCACC TCGG GGTGGCC              TTTTCGCGTTCTCGC 100 103
JJQ57_RS25450 5356058 .. 5356083 -  -8.2  -3.35996   GATCGTCATCGACAA         CGTCACCGCC CTGCAT GCCGGCGACG          GTCCGCCGCAGATCC  60 212
JJQ57_RS25440 5352890 .. 5352911 -  -4.3   -3.5936   CGGAAACGCCGGAAA           GCGCCCC-CG CTC CGTAGGGCGA           ATAACCGCTCGCGGT  53 56
JJQ57_RS25410 5344212 .. 5344270 - -13.3  -2.53263   TGCACCGGCAAGGCA TCGGCAGGTTCGCCAGGTAAAGACCGCCG ACG CGACTGTCTTT-CGTAGCGAACCTGGCG- CCCTCACTCTTCTTC  67 29
JJQ57_RS25395 NONE
         pap 5339493 .. 5339505 -  -4.8  -2.65298   TCGAGCGAGGATAAG                GCGA GGCAA TCGC                GCGAGGCACCGATCA  43 100
JJQ57_RS25385 5338140 .. 5338164 -    -7  -4.88407   CTATGCAAGGAAAAA          GGCGCCTAGC CTAGC GCGAGTCGCC          GGGGATGGCACGGAG  83 104
JJQ57_RS25380 5337319 .. 5337329 -  -8.2  -3.54951   CACCGCACTACATAA                 CGCC GCT GGCG                 TTATTCGCCCTACCC  65 145
JJQ57_RS25335 5329525 .. 5329539 - -11.4  -4.83615   GATGGCGGATAAAAA               GCGTCG CGG CGACGC               GCTGGCGCACATAAA 100 168
JJQ57_RS25330 NONE
JJQ57_RS25325 NONE
JJQ57_RS25320 5326834 .. 5326844 -  -8.2  -3.94724   TAAAGCATATAAGAA                 CCCG ATT CGGG                 GTCTTGCCTCAGAGC  71 34
        ssuE NONE
JJQ57_RS25310 NONE
        ssuD NONE
        ssuC NONE
        ssuB NONE
JJQ57_RS25290 5321845 .. 5321870 - -18.3  -5.15634   TACGCGACGAAAAAA         GGCGGGG-CCCC CTC GGGGTCCCCGCC         CTTCTCGGCGCCGCA 100 59
JJQ57_RS25255 5317626 .. 5317663 - -17.1  -3.29511   GCCAGCTCGGCAGAA   GCTAGGCGAATAACGCC TGGA GGCGTTATTCGCCCTAC    CGCTTGTCCCCTCCC  91 201
JJQ57_RS25245 NONE
JJQ57_RS25240 5315410 .. 5315423 -  -3.7  -3.07816   CGGGCAGGGAGTGAA               CGGCG GTCA CGGCG                GCATCCTCTTTTGTC  45 150
JJQ57_RS25235 NONE
JJQ57_RS25230 5313672 .. 5313690 - -11.7  -3.73224   CCATGGGTGACGAAA             CGCCTCG TCCAG CGAGGCG             CCAGCACCCTAGCCC  78 82
JJQ57_RS25225 5313265 .. 5313289 -  -6.3  -3.21747   CCAGGGCAGTAGGAA          GGATTGCCCGA GTG TCGGCCAGCCC          GCCGGCGGGGACAAG  53 91
JJQ57_RS25220 5312242 .. 5312272 -  -5.4  -5.30575   GAAAAAGCGAAAAAA       GACACCGGCC GGATGGCAGAA GACCGGCGTC       AGCCGGTCTTCACCT  91 81
JJQ57_RS25215 5311102 .. 5311129 - -11.9  -3.90048   CCCTTCTGAAAAATA        CCGCCGGCGCC GATCTT GGCGCCGCCAG         CCCGGTCGCGGTGCC  81 337
JJQ57_RS25195 5306734 .. 5306757 -  -9.4  -3.55444   TTCGTATCCGCGAAA          GCGGCCGCCC CGAG GGGCGGCGGA           CCTCAGAAGTTCACC  68 28
JJQ57_RS25190 5305286 .. 5305315 - -25.1  -3.44146   GGCCGTCATAACGAA       CGAGCGCGTCGGC ACAA GCCGACGCGCTCG        TCGCGACTGGCCGGG 100 43
JJQ57_RS25185 5302634 .. 5302687 -  -8.6  -3.18582   GATCCCACCGAGCAA CTGCGCCTCGGCCAG-CGCCTGGGCG AACT CGCCCCGCCGACCGGCCGCGCC-CTG CACTGAGGCCGCTCA  58 38
JJQ57_RS25175 5300600 .. 5300625 -  -7.4  -3.53012   CGGCCTCGCCGGAAA         CGCCGGCCCG TCACTG CGGGCCGTAG          AGAATCCGTTCCGCC  60 10
        pdhA NONE
JJQ57_RS25165 NONE
JJQ57_RS25160 5296799 .. 5296810 -  -7.2  -2.71712   CGGCTTGCCGGAAAC                CGGC GCTT GCCG                 TACAACGCCCGGCAG  52 462
JJQ57_RS25140 5295360 .. 5295385 - -23.3  -4.26903   GGGAGCCGAGGAAAA         CCCGGCGCGGC CCGT GCCGCGCCGGG          TTCGCTCAATTGCCG 100 31
JJQ57_RS25135 5295019 .. 5295029 -    -4  -2.64218   ATTTTTTATGATAAT                 GATT TTC AATC                 GTATTCTTGTGAGAT  41 49
JJQ57_RS25130 5294422 .. 5294439 -  -3.4  -2.87132   GTTGGTCGTTATAGA             GGTTCA GACGCG CGAACC              GGCAAGACTCGGTAA  42 46
JJQ57_RS25125 5293326 .. 5293357 -  -3.7  -4.08767   TCCACGGCTCGAAAA     TGCGCTT-C-CCGGC CCCT GCCGGAACAAGCGCG      CGGGGCGACTGCCCG  61 77
        hasR NONE
        hasA 5289793 .. 5289814 - -10.2  -2.73364   CCTTTAGCGCAAGCA           GTCCACGA ACGCTA TCGTGGAC            AGTTGCTCAGGCCGC  60 32
JJQ57_RS25110 NONE
JJQ57_RS25105 NONE
JJQ57_RS25100 5285071 .. 5285086 -  -8.2  -4.18494   CATCGCCATCGAAAA              CGGCAC CAGC GCGCCG               CAACTGTTGCAGGCG  76 72
JJQ57_RS25090 5284100 .. 5284131 -  -7.9  -3.01924   CAGGCTTCCTGAACA      CGACCGGGCGATG GTAGTA CATTGCCAGGCCG       TTGCGCTGGCCGGCG  54 87
JJQ57_RS25085 NONE
JJQ57_RS25080 NONE
JJQ57_RS25075 NONE
JJQ57_RS25070 5280315 .. 5280351 -  -4.4  -2.88231   AGCAGAAGTACCAGA   CCGCGAC-CATGCGCGAG TTC CTCG-ACCTGTGCCGCAG   CGAGACCGCCGGGAT  44 82
         fpr 5278362 .. 5278401 -   -23  -3.53091   AGCGGGGGCCGGAAA  GCAGAAAGCCCCTGCCGC GGAT ACGGCAGGGGCTTTCTTC   GCCTGGCGCGACGAG 100 54
JJQ57_RS25020 5269181 .. 5269209 -  -4.3  -3.65812   GGCCCTGGAAGACAA        GCCGCGACTGAAG GTG CGCCCGCCGCGCC        TGGGCGGCAACCGCT  55 493
        phnC 5265959 .. 5265972 -  -2.3  -3.03159   TGAAGCGTTTCAACA               TGGAG AGAA CTCCT                GGGCAGGGTTTGGCG  41 65
        phnD NONE
        phnE 5264065 .. 5264081 - -10.8  -3.53811   TGCATGGTTTGGAAA              GGGCGC ACCAG GCGCCC              TCCTCGCGTCGTCAG  73 37
        phnF NONE
        phnG NONE
        phnH NONE
JJQ57_RS24965 NONE
JJQ57_RS24960 NONE
        phnK NONE
        phnL NONE
JJQ57_RS24945 NONE
        phnN NONE
        phnP 5255933 .. 5255954 -  -9.3  -2.61264   CCGCTGAGCGACAAG           GGCGCCACG GAAC CTCGGCGCC            ACTGAGCCGGCACAA  56 294
JJQ57_RS24910 5254427 .. 5254454 - -12.1  -4.18018   GGCCGGCATGGAAAA        GCCCCGTC-TGA GCGAT TCAGGACGGGGC        TTTCTTTTAGGCTTA  86 110
JJQ57_RS24900 5252055 .. 5252073 - -11.7   -4.7254   ATCGCGGAGGAAAAA             GCCCAGC GTAGG GCTGGGC             TTATACCTTCTGGAA 100 94
JJQ57_RS24890 5249963 .. 5250017 -  -7.7  -3.59262   TGCCACAGGGGGAAA TGGCGG-AGACGGCGTGCCGCACGACG GCA CGCCGGGCTGG-CGGCGTCTGCCGTCA GGCCTCCTTCTCCAG  62 23
JJQ57_RS24885 NONE
        amiC 5247622 .. 5247653 -  -7.8  -2.71364   GCAGGCTGCCAAGCA      GCGAGTTGGCGCTC ATGG GAGCGCTCCCCCGC       CCATGCTGGCGGACC  52 6
JJQ57_RS24875 5246571 .. 5246586 -  -6.1  -4.36127   CCGAACAATGGAAAA              CGCTC AGTCGA GAGCG               AGTCGCTCAGAATAT  71 486
JJQ57_RS24870 5245815 .. 5245848 -  -8.8  -4.08767   GCTAGCGTCGGAAAA     GGCGGCGGGGACGCT TAGCC AG-TTCCCCGCCGAC     CGTCATCGACGAGAA  73 28
JJQ57_RS24860 NONE
JJQ57_RS24855 5242627 .. 5242639 -  -2.6  -2.71712   GCTGCTTTTCGAAAG                CCGC GAGGT GCAG                TGGAGCACGCCGTTC  38 285
JJQ57_RS24840 5238853 .. 5238866 -  -3.8  -4.98917   GAAAAGAGAAGAAAA               TCCG CCGCAT CGGA                CCTCCGGTCCCGTAC  81 205
JJQ57_RS24835 5237504 .. 5237519 -  -2.4  -3.76125   TCAGGTGAAGGGAAA              GCGTCG GACT CATCGC               AACCTCTCCTGCCTA  52 64
JJQ57_RS24830 5236593 .. 5236609 -  -7.9  -3.85817   ATCGCCGGGGAGAAA              CTCCGCG CGC CGCTGAG              CGGACAACTGCTGGA  66 321
JJQ57_RS24805 NONE
        cheR 5232247 .. 5232265 -  -6.6  -3.57144   TCGCGCAGTCCTAAA             CTGCCCCG CTC CGAGCCAG             CCGTCCTGTGCCGAG  59 185
        hsbA NONE
        hsbR NONE
        htpB 5229670 .. 5229689 -  -7.8  -4.39386   CGGAAAGGACGAAAA            CCTCAGCG ATAG CGCTGACG             TTCCTGTTTGAAAAG  81 8
        recQ 5227435 .. 5227447 -  -2.6   -2.8733   GGCGTCAGAAAATAC                CGGC AAATG GCCA                TATCACGACTCCAGT  40 28
JJQ57_RS24775 5226181 .. 5226199 -  -3.1  -3.26568   CCACAGGGACAAAAT            CGGCCATG GACT CA-GGCCA             CCACCTGGTTGCGGC  46 18
JJQ57_RS24770 5224942 .. 5224959 -  -5.7  -3.16683   ATTTCATTTGACTAA             TTATTAG TCGG CTAATAA              TGCCCGTCCAATTTC  51 91
JJQ57_RS24765 5224390 .. 5224401 -  -5.8  -4.34771   GAAAACCGACGAAAA                CCTC TGTA GAGG                 GCTTTCGGACGAAAG  71 97
JJQ57_RS24760 5222008 .. 5222059 -  -7.4  -2.82156   CGACAACGAATACGA CAGCGGCTACATCAACGCCG-CCA GCCTGA TGATCGGCTTCGATAC-GCCGCTG GGGCCGCTGACCTTC  52 111
JJQ57_RS24750 5219570 .. 5219585 -  -2.5  -3.63515   GTTGACCTGCAACAA              GCCAT GGGCGG ACGGC               AGCGGTTCAGCGGGA  49 32
        rfaD 5218091 .. 5218110 -  -9.2  -2.63073   GGTGGGCAACAACAT            CGTCGGCC GCCT GGCCGACC             GCCATACCATCGCGG  54 419
JJQ57_RS24700 5209331 .. 5209349 -  -4.5  -5.28315   AGAAAACGGAAAAAA             TCGTACG TTAAG CGTACGG             CCTGTCAGGTTGAGG  88 381
JJQ57_RS24695 5207640 .. 5207668 - -15.3  -2.72344   GCCGAGGCTGAATCA        GCATGAGGCGCGA TGA CCGCGCCTCATGA        GTTGACTTAAGCAAC  78 32
JJQ57_RS24690 5206131 .. 5206175 - -12.8  -2.72344   TTGGAGGGTCAAGTA GCACGAGCCCGGTG-CAAGGC GAAC GCCTGGGCACCGGGCTATCGC CATCACACGTAATGC  68 28
JJQ57_RS24665 5202247 .. 5202264 -  -5.5   -4.0616   CATCTCAATCAGAAA             CAGCTCC CTGC GGATCTG              CTTGCGCTTGCCGAC  65 70
JJQ57_RS24650 NONE
         map 5200493 .. 5200516 -  -2.2  -4.11484   TCGAACTCGCCAAAA          CGCCTGCCGG ACAC CCGCCAGCCT           CCCTTCGGAAAAGTC  59 69
JJQ57_RS24640 5200172 .. 5200185 -  -2.5  -4.24204   CAGCCACATGGAAAA               TTAAA ACCA TTTAA                AATCAATAGCTTGTG  59 113
JJQ57_RS24635 5199690 .. 5199720 - -14.6  -2.62184   TCCCTTCCGACACGA       GCGGGGCCGGTCGA TCC TCGCCCAGCCCCTC       GAAGCTTCACTCTAG  74 92
JJQ57_RS24620 5197738 .. 5197756 - -11.7  -4.76041   GATACTGACGAAAAA             CGCCGGA GCTGA TCCGGCG             CGAAGCGCCCATGGT 100 89
        thrS NONE
        infC NONE
        rpmI NONE
        rplT 5194385 .. 5194414 - -16.6  -4.61199   ACTCCAGATACAAAA       TAGGGGAAGAGC GGTAAG GCTCTTCCCCTA        TCGGTGACGTTACGT 100 72
        pheS NONE
        pheT NONE
        ihfA NONE
JJQ57_RS24580 NONE
JJQ57_RS24575 5190086 .. 5190109 - -13.2  -5.73339   ACAAGCATAAAAAAA          TCCAGCCACC GCTA AGTGGCTGGA           TTTTCTAGGGTTTTT 100 41
JJQ57_RS24570 NONE
JJQ57_RS24565 5186500 .. 5186513 -  -3.8  -2.79915   ATCTACCTCACTAGA               GCAG TCGTTT CTGC                TTCAGGATGTAGCCC  42 7
JJQ57_RS24560 NONE
JJQ57_RS24555 NONE
JJQ57_RS24550 NONE
JJQ57_RS24545 NONE
JJQ57_RS24540 NONE
JJQ57_RS24535 5175472 .. 5175484 -  -6.3  -2.71322   GCAAGTTAGAGAGCA                CCAAT TTG ATTGG                GTAGCCCAACTGATT  49 229
JJQ57_RS24530 5174116 .. 5174135 -  -4.8  -3.83502   GAGCCCGATAGCAAA            GACTCGGC AAAA GCCGGGGC             TTTGCTCGAAACCGG  60 102
JJQ57_RS24520 NONE
JJQ57_RS24515 NONE
JJQ57_RS24510 NONE
JJQ57_RS24505 5166383 .. 5166397 -  -7.8  -5.03145   CAACGCGCGAAAAAA               CTGGCG ATA CGCCAA               AGGCAACCACTTGCC  93 177
JJQ57_RS24445 NONE
JJQ57_RS24440 5148664 .. 5148680 - -15.1  -3.53012   GGCGCTGCCCGGAAA              GCCCGGC GAG GCCGGGC              GAAACGCGGCATAGG  85 387
JJQ57_RS24435 5147635 .. 5147646 -  -2.2  -4.22748   GAGGAAGAAATGAAA                CGACG CGG CG-CG                CTCTACGAAAGAAGC  62 354
JJQ57_RS24420 5145344 .. 5145359 -  -6.2  -3.27475   GGCCCGACGATAAGA              TTGAAG TCGA CTTCAA               GGTCAACGCTTTTTT  52 98
JJQ57_RS24415 5143981 .. 5143993 -  -6.9  -3.63991   GATCACCCGCAAGAA                GCCGG CGC CCGAC                GACCACGACGCCTGG  61 103
JJQ57_RS24400 5140521 .. 5140536 -  -7.5  -2.54896   GGCTGAGCGAACCGA              GCGGG TCGCGG CCCGC               CCTTGGCAGAGCGCG  51 48
JJQ57_RS24375 5135024 .. 5135053 - -11.5  -2.53263   CGCACTGTGAACGCA       GACGGGTCATTCAG TCA CTGAATG-CCCGGC       CACCTCGCGACCCGC  62 57
JJQ57_RS24370 5134065 .. 5134098 - -16.7  -3.53012   CCCTTTCCCCGGAAA     GGGCCGCCGCACTCAG CGG CTG-GCGCGGCGGCTC     ATGAACGCCAGGCGC  89 4
JJQ57_RS24365 NONE
JJQ57_RS24360 5132270 .. 5132307 -  -3.1   -2.5409   AGAAGGTCGAATCGA   TCATGGCGTGCCCATCG TTAC CGGTGGCCGCGCCGCGC    TGTTACCGCGCGGAC  39 105
JJQ57_RS24355 5131207 .. 5131231 - -11.3  -3.14344   GAGGTGGCGGACGAA          CGGCGGCGGCG CCA CGCCGACACCA          GCCCCTCCGCCTGAG  67 48
JJQ57_RS24325 NONE
JJQ57_RS24320 5123586 .. 5123613 - -11.3  -3.78312   AAACGACGCACGAAA        GCTCCCCCAGA GATTAA TCCGAGGGAGC         CGTTCCGGGGAAATC  76 95
JJQ57_RS24315 NONE
JJQ57_RS24310 5121355 .. 5121367 -  -3.3  -2.62184   GCTTGGCTGACAGGA                CGGCA GAC TCCCG                CGGCGGCGCCAGGTT  39 61
JJQ57_RS24305 5120867 .. 5120904 - -14.2  -3.92075   ACCGCGATCGAGAAA  CGCCGCTACGC-CCAGGC CCTG GCCCGGCGCG-AGCAGCG   CAAGCTGATGGAACT  84 117
JJQ57_RS24290 5117801 .. 5117832 -    -5  -3.03159   TCAATCTGCTGAACA      GCC-TCGGCGACGCG CTG CTCAGCGCCAACGGC      GACGACGTCGAACTT  45 492
JJQ57_RS24260 5109115 .. 5109140 -  -3.2  -4.07568   CCTTCCTTGGGAAAA         GCCGC-GACAG GACAT CTGCCCGCCGC         TCAACAGTTGATATC  58 26
JJQ57_RS24255 NONE
JJQ57_RS24250 5104499 .. 5104532 - -10.3  -2.72379   GGAATTCCCCAACTA     CATCGCCGCGCTGGAC CTG ATCCAGCGCG-CAGTG     ACACGCCTGGCGGCC  57 443
JJQ57_RS24225 5099943 .. 5099953 -  -8.2  -3.22653   ACGAGTCGTAGAACA                 GGCC TCA GGCC                 TTCATCGCTGCCATC  58 19
JJQ57_RS24210 5090396 .. 5090437 -  -8.7  -5.20222   ATTAAAGAAAGAAAA GCGAGCGAGAAGAGAAT CGAGAAAT ACGCTCTTCGCGCCCGC  CTTCGTATTTGTCCG  93 53
JJQ57_RS24190 5085183 .. 5085208 - -10.3  -4.07885   CAGCGCCCTGGAAAA         GCGCGGCCTGC GCCG GCAGGTAGCGC          TGACCCTGCCGCACT  78 269
JJQ57_RS24180 NONE
JJQ57_RS24175 5081249 .. 5081263 -  -3.4  -3.73224   CCAGCGTGCAGCAAA               GCGCCG ACG CCACGC               GCAATACCTCGATGG  53 439
JJQ57_RS24140 5075753 .. 5075780 -   -12  -3.53811   CCGAGGGCGTGGAAA        CCCCGCAGCAAC TGGC GTTCCTGCGGGA         GAACCATTGCGAGCT  72 156
JJQ57_RS24130 5071691 .. 5071716 - -16.1  -4.75404   AAAGCCGACGAAAAA         GGCCGTGGGGG GAAT CCTCCACGGCC          TTTTTTCTTTCAGCC 100 49
JJQ57_RS24115 5067477 .. 5067511 -  -2.7  -3.01712   GTGCGTCGGCGAACA    GGTCCATGGGCCGCAG GTTA CTACGCCGCAAGG-CC     GCTGCTGAAGCCTGG  41 51
JJQ57_RS24110 NONE
JJQ57_RS24105 5066308 .. 5066327 -  -9.2  -5.42259   CCAGGCGCAAAAAAA            CGGGCGAC CGAA GTCGCCCT             AAGTGCCTTGCGTGC 100 421
JJQ57_RS24100 NONE
JJQ57_RS24095 NONE
JJQ57_RS24090 5063074 .. 5063106 -  -7.6  -3.05596   GATGGCGCCACGCAA      GCGCTGCCGCTCAG TCCCC CTGCACGGTAACGC      TGGCGGTCATCCCGG  54 3
JJQ57_RS24070 5058351 .. 5058374 - -15.4  -5.40474   ATTCGGTCAAAAAAA          TGACCGAGAC ATTA GTCTCGGTCA           CGGTCTTTCCTGTCC 100 76
JJQ57_RS24065 5056461 .. 5056484 - -18.2  -3.33815   ACTGCCTGCAACGAA          GAAGCCCCGC ATCG GCGGGGCTTC           TTCAGGCAACGGCGG  93 43
JJQ57_RS24060 5056050 .. 5056069 -    -7  -3.34043   CGGAGGACGGGAGAA            GCTCCGGC CACT GCCGAGGC             GAAAAATATTCGGAA  55 129
        hrpA 5051964 .. 5051989 - -21.9  -4.94972   GACCAGAACGAAAAA         GGCGCGCCGGT TTCG ACCGGCGCGCC          TTTTTCATTTCGCGC 100 54
JJQ57_RS24045 5049670 .. 5049682 -  -4.7  -4.56597   CTGTTTCTCGAAAAA                CCTGC ACG GCTGG                CGTCCCTGTTCGCCG  74 216
JJQ57_RS24040 NONE
JJQ57_RS24035 NONE
JJQ57_RS24030 5045952 .. 5045968 -  -4.3  -3.30124   GGCCAGTCTTTATAA              GCCCCTG GCT CAGGATC              TACCTCCCACTCTAC  48 292
JJQ57_RS24020 NONE
JJQ57_RS24015 5042377 .. 5042404 -  -5.4  -3.32963   ACCGCGAGCTGAGAA        CCCGGATCGCCG CGGA CGGCAACGCGCG         CTTCCGCATCGTCAG  51 116
JJQ57_RS24005 5040998 .. 5041026 -  -8.2  -3.14344   GAGTTCGTCCACCAA       CTGTTCGACCTGG CCCG CCAGGGC-AACAG        CCAGCGCCTCGAGCA  56 459
JJQ57_RS23995 NONE
JJQ57_RS23990 NONE
JJQ57_RS23985 5038431 .. 5038459 - -21.7  -4.99134   AGCGGAAACGAAAAA        GCCGCCGCCCACG AAT CGCGGACGGCGGC        TTGGTGTCGAGGGTA 100 48
JJQ57_RS23980 NONE
JJQ57_RS23975 NONE
JJQ57_RS23970 NONE
JJQ57_RS23965 5035511 .. 5035542 -    -8  -3.68222   CTCCAATGCGAATAA      CGCGAAAAGCCC TCTACTAC GGGCCTTTCGGG       TTATTCGATATGGGT  65 48
JJQ57_RS23960 5033954 .. 5033973 - -11.4  -4.77157   GGAAGCGATTAAAAA            GACCTCGC CGGA GCGAGGCC             GAAAACAGGAGCAGA 100 54
        oprP 5032188 .. 5032214 - -19.4  -3.54307   AACATCCTGCGGAAA         CGAGCCCCGCCC GCC GGACGGGGCCCG         ACCGCCTCAGAACAC 100 32
JJQ57_RS23950 5031725 .. 5031739 -  -8.5  -3.53343   AATGCCTCGGGCAAA               CCCGG ACATG CCGGG               CCGCGCGAGGGGCTC  63 39
JJQ57_RS23945 5030658 .. 5030677 - -10.7   -5.0925   CCGGAAAAGCAAAAA            GCCTCGC AAATGA GCGAGGC             TTCTTGTGGGGTCCA 100 164
JJQ57_RS23940 5030133 .. 5030170 -  -3.3  -2.57931   GCGATCTCGCAGAAC   GCCGCGAGGACGAACCA GAGG TAGTTGATCACCGCCGC    CCGCCCTCCCGCTCC  39 16
JJQ57_RS23935 5029603 .. 5029613 -  -8.2  -3.82824   GATCACCCAGAAGAA                 CCCG CAA CGGG                 CCAGGGAACTCAACG  68 247
JJQ57_RS23925 5028890 .. 5028914 -  -5.6  -3.35679   GCGGGCGACTCACAA         GC-CCCGCCGA TCGC CCGTCGGGCGC          AGTTTCAGAGCCCGG  52 30
JJQ57_RS23920 5024104 .. 5024114 -  -8.2  -2.59742   GCCAACGGCCACAAG                 GCCG AAC CGGC                 GCAAGCGCTGAACGG  52 415
JJQ57_RS23910 5020158 .. 5020171 -  -9.5  -3.08464   GCAGGAGCGACGGAA               CCGGC TTCA GCCGG                TGAAGCTGGCTTCCA  60 18
JJQ57_RS23905 5019214 .. 5019228 -  -3.6    -3.695   CGTAAAGAGCGTAAA               TACAAA TGA TTTGCA               AATGTGAGCTTGACT  54 40
JJQ57_RS23900 5016918 .. 5016946 - -16.8  -3.54475   GCGCCCATCATAGAA       CAGGCGTCC-GCG TTGC CGCAGGACGCCTG        TCGTCGGACGATGCG  91 60
JJQ57_RS23895 5014892 .. 5014910 - -17.4  -5.40474   AGTTCGCCAAAAAAA             GCCCCGGC ATC GCCGGGGC             TTTTTCGTTTCTGCG 100 47
JJQ57_RS23870 5011788 .. 5011798 -  -2.4  -2.76189   TAACCGACTGAACTA                 CCGC TGC GCGT                 AACTTGCGAGATTGG  39 38
JJQ57_RS23865 5011572 .. 5011585 -  -3.1  -3.28712   GGTGCGCGCGGATAA               GTTCA AGGC CGAAC                TTTCCGAAAAATGAA  46 158
JJQ57_RS23860 5010656 .. 5010676 - -18.3  -4.55128   ATCCGCAAATGAAAA            CGCCCCGTC ATG GACGGGGCG            TTTCATGCATCGCGG 100 49
JJQ57_RS23855 5009619 .. 5009629 -  -5.4  -3.53012   TCGCTGCCGGGGAAA                 TTCG CCG CGAA                 GATACCCGCGACCTG  54 295
JJQ57_RS23845 NONE
JJQ57_RS23840 NONE
JJQ57_RS23835 5007809 .. 5007860 -  -7.3  -2.54896   CTGCCAGGGAATGGA TGCCGCGCACCTGGCGACGCTGGCCT CCG AGGCCAA-G-CGCCAGGC-CAAGGCG GTGCCAGGCTACAGC  47 78
JJQ57_RS23820 5002772 .. 5002812 -  -7.3  -3.91911   CCTACGCCAAGGAAA  TGGGCTGGCCGGTCAACGC CTG GCGCTGACAGGCTCGCCGC  GAAAGCGCGAGCGGA  68 80
JJQ57_RS23785 4996466 .. 4996495 -  -2.2  -2.50016   CGGCAGTATGAACAT      GCGA-GGGCTCC TTTTCCCG GGAGCCCATC-C       TCGCAGAAGGTGCCG  37 61
JJQ57_RS23780 4995505 .. 4995515 -  -8.2  -3.28712   GGTCTCGGCCGACAA                 CGCC CAT GGCG                 TACACCCGAACTACG  58 424
JJQ57_RS23750 NONE
JJQ57_RS23745 4989219 .. 4989248 -  -9.2  -3.05463   AGCCTGCGCAGCGAA       GCCGGCGCGC GGGTACTGGT GCTCGCCGGC        AAGCCGTTGCGCGAG  60 197
JJQ57_RS23705 4975962 .. 4975987 -  -5.3  -4.23045   CAATGATCCAAGAAA         CTATTGCCCAG CTTA CCGGGCATTTG          AAGTTTGTTGTTGAC  65 110
JJQ57_RS23660 4968937 .. 4968949 -  -4.8  -3.79668   AGCGAAGCCACTAAA                GCAC TCCTT GTGC                TTGGATTCACGCCGG  58 433
JJQ57_RS23630 4963649 .. 4963676 - -24.2   -4.8622   TTCGGCAAGGAAAAA        CGCCGTGCCCGG TTGC CCGGGCACGGCG         TTCCCCAATCGAACC 100 48
JJQ57_RS23625 NONE
JJQ57_RS23620 4961465 .. 4961493 - -19.6  -4.06502   GACGCTGAAACGAAA       GGCGGCGGACCGG AAAC CCGG-CCGCCGCC        TCGGGCTACGCCTTC 100 50
JJQ57_RS23615 NONE
JJQ57_RS23610 4958930 .. 4958947 -  -9.8  -3.55444   GGCTCATGGGGCAAA             GGGCGG CAGATT CCGCCC              TTGTAGTTCTCGACC  70 84
JJQ57_RS23605 4958519 .. 4958533 -  -3.4  -5.47218   GTCGATGGAAAAAAA               GCGCCC GGC GGACCC               GCGATGAAACCGCCC  91 231
JJQ57_RS23600 4956897 .. 4956916 -  -4.3  -3.64703   TTTCCGCCAGCGAAA            CGGTGTTC TTATC GAAC-CCG            TGCCCCGGCTCGATC  53 448
JJQ57_RS23570 4952011 .. 4952027 -  -2.2  -3.26719   TTTATAAACAGGCAA              CACCTA GTCTT TCGGTG              AGAGAACGCTCTATT  45 36
       azoR3 4951201 .. 4951237 - -10.9  -5.95539   CGCGAAATAAAAAAA    CCCGGTCGAACAC GCGGGGGGAAG GGGTTCGACCGGG    TGCTGCGTCCAATCA 100 38
JJQ57_RS23535 4946260 .. 4946307 -  -7.5  -3.14132   GCTCGGCGCCAGGAA CCGG-CCGGTCCCGGACAGCGG CTTAT CCGCTAACCGGGGCTGAACCCG CCGAGCCTTGCATCC  56 100
JJQ57_RS23515 NONE
JJQ57_RS23510 4941841 .. 4941859 -  -6.7  -3.15544   CCGCATGGGCATCAA            CACCG-GC TATT GCACGGTG             GGCAACTTCGGCGCC  52 390
JJQ57_RS23495 4938732 .. 4938755 -  -4.4  -2.84051   GCACGGCGACGAAAT          CAGCGTGTAC CAGG GCGCGCGCTG           GAGCGATCCGGCACC  44 421
JJQ57_RS23465 NONE
JJQ57_RS23460 4932830 .. 4932853 -  -6.6  -3.63515   GGCCAGGCGGAAGAA          GGCCGGCG CTGGCTGC CGGCGGCC           GTGGAAGCCGCCCGA  59 120
JJQ57_RS23420 NONE
JJQ57_RS23415 4926398 .. 4926416 -  -3.7  -3.13522   AGGCCTCGAGGAAGA             CCTCCAG CGCGT CCGGCGG             GATATAGAGGTCCTG  47 186
JJQ57_RS23410 4925607 .. 4925639 - -11.3  -4.11484   CGGAAGCTCGGAAAA      GCTGACCGTCCGC AGGGGGG ACGAACGGCCAGC      GGCGCGGCGCGATCA  84 38
        scpB 4924451 .. 4924480 - -11.3  -3.73224   CCAGGGTCGATGAAA       CGGAGCGGGCCGGC CTC GCCGGCGCGG-CCG       GATGAATTCTACAGG  76 53
JJQ57_RS23400 4923867 .. 4923899 -  -7.7  -3.09516   GCGTCCAGGAGGGAA     TGACTATCGGGCCG ATCGAG CGGCCCG-CGGTCA      CTCGGCCTCGGCGTC  54 23
JJQ57_RS23395 4923221 .. 4923251 -  -9.7  -3.15861   GATGATCCCCACCAA      GACCGGCGCCG-CCG AGG CGGTCGGC-CTGGTC      CTGCCGGAACTCGCC  59 374
         edd 4920594 .. 4920616 -  -8.3  -2.98823   GTTGCCGGAGAGACA           GCCGCCAGC CAAGC GCCGGCGGA           CATCGACCTATCAGA  57 42
JJQ57_RS23380 NONE
        gltR NONE
        gtrS 4917272 .. 4917288 -  -4.4  -3.28712   GCCGCTGCCGCAGAA             CACG-GG AGAA CCTCGTG              CCTACCTGCCTCGTT  48 64
JJQ57_RS23360 4915467 .. 4915489 -   -17  -2.60244   GTGCGAAGGAACCCA           CCCGTGCCGC TCG GCGGCACGGA           GCCAGTCGGGAGGAT  83 76
JJQ57_RS23355 NONE
JJQ57_RS23350 NONE
        ugpC NONE
        oprB 4911008 .. 4911036 - -18.1  -5.40072   GTCGCCGGAAAAAAA        CGGCCCGCCCGAA ACG CTCGGGCGGGCCC        AGGCACAACACCGGA 100 57
JJQ57_RS23335 4909990 .. 4910022 - -11.9  -3.44051   CCTCGACGAGGACAA      CTGACCGCCCGCCTA TTG CAGGCCGGCGGCGAG      ACTCAGGCGCATGCG  74 5
         zwf NONE
         pgl NONE
JJQ57_RS23315 4906062 .. 4906077 - -11.8    -5.626   GACGGCATAAAAAAA              CCCGGC CGAA GCCGGG               CATGCCCAGGCGGGC 100 45
        rluB 4904227 .. 4904242 - -11.8   -4.7497   CCCAGGCATGAAAAA              GGCCCC CGAA GGGGCC               TTTCCAGGGCGCTTT 100 45
JJQ57_RS23300 4903655 .. 4903679 -  -7.8  -3.20723   GCTCTACGAAGCCAA         GCGC-GACGGC CGCA ACCGCCTGCGC          TGCGCCTGAGGCTTG  56 138
        mtnA 4894417 .. 4894451 -  -9.3  -3.54408   CCTGAGGCAAACGAA    GTAGGTCGGCGCATGC CCGA GCA-GCGCCAACTCAC     TACAAATCAACGACT  68 168
        gyrA NONE
        serC NONE
        pheA 4889310 .. 4889327 -  -4.1  -2.90075   CTCTTCGGAATGACA             GCG-CGCT CAG AGCACCGC             TTTCGGATAGGAGCC  44 14
JJQ57_RS23235 NONE
JJQ57_RS23230 NONE
         cmk 4884968 .. 4884981 -  -9.5  -3.65529   ATACCTGTAGTCAAA               GGCCC GGAA GGGCC                CGATTCCGCATCACC  68 260
        rpsA 4883222 .. 4883253 - -19.6  -4.24123   CCAAGAAGGGGAAAA      CGAAAAAGGGCGGC CTAG GCCGCCCTTTTTCA       TGATGGATCAGAGAC 100 41
        ihfB NONE
JJQ57_RS23210 4882546 .. 4882569 -    -6  -4.30576   GCTCCATCAGCAAAA          GGGGATGATA AGTT TATCACCACC           GACTATTTGCAACAG  71 18
JJQ57_RS23205 4881698 .. 4881717 -  -7.8  -3.53761   GAACGTCGCCGCAAA            CGGCCTAG CCAC CCAAGCCG             TCGATCAGCAGACCA  60 129
JJQ57_RS23180 NONE
JJQ57_RS23175 4872362 .. 4872381 -    -5  -2.75268   CAACTATCTCTAAAC            CG-TTGCCC AAT AGGCAAGCG            TTATCGCCATTCCGG  44 0
JJQ57_RS23170 4871222 .. 4871232 -  -6.8  -3.28712   CCGCCTGGTGCAGAA                 GCTG ACC CAGC                 GCGGTGTGCGTTCGA  55 392
JJQ57_RS23160 4870365 .. 4870386 -  -5.9  -2.75064   CTGGCTAGCCAAGGA           TCTC-TAGCG TCG CGCCAAGAGA           CTCTTGGCTAAGAAA  46 7
JJQ57_RS23090 4859371 .. 4859397 - -10.2  -3.40299   GGATGAGACTTATAA         CCGTGGATGA AAACACA CCATCCACGG         CTATACCCTAGTCCA  68 33
        katA 4847476 .. 4847512 -  -7.1  -5.10601   ATAAAATTATAAAAA    TCCGTTGCTGCGAACGG GGG CAGGCTGCAGCAACGGT    GCAAGACAGCTTGCA  88 326
JJQ57_RS23020 4845772 .. 4845783 -  -3.6  -5.53991   TACCGACTAAAAAAA                GCAG AAAA CCGC                 ATGCCTTCTAGCCTC  93 173
JJQ57_RS23015 4844742 .. 4844761 -  -7.9  -3.65812   TTCTCCTCAATATAA            GCTGAAG GCTAGG CTTCAGC             GAAAGTTGGGCACTG  62 87
JJQ57_RS23010 4844095 .. 4844128 - -19.1  -5.56264   TCTAAATATAAAAAA     GCAAGGCTCAG-AAGC ACT GCTTACTGAGCCTTGC     TTATAAAGTTAAGCC 100 34
JJQ57_RS23005 NONE
JJQ57_RS23000 4841195 .. 4841220 -  -4.7  -4.62336   ACTGGACTCTAAAAA         CTGTATTGTTG ACAG CAGCAATACTG          CTAGATAAAGAGAAG  74 72
JJQ57_RS22995 4839381 .. 4839393 -  -4.1  -3.35964   GCACAAATAAAACTA                GAAGA AAA TCCTC                AAAAACAAAATAAAC  48 363
JJQ57_RS22990 4838408 .. 4838420 -  -2.7  -3.31133   AGAATTACGACAAGA                TCAGT CAG ACTAA                AAATTCAGAGCAAAG  45 48
JJQ57_RS22960 4831520 .. 4831535 -  -3.2   -3.3487   AGTCAACCAAACACA              GGCC GCTCCAAT GGCC               CACTCACACACCACT  46 29
        exoU NONE
JJQ57_RS22925 4823285 .. 4823314 - -15.1  -3.21747   TCATTGCAGCATGAA       CAGATAGGCCACC TTCG GGTGGCCCATCTA        TTAGAGAAATTACCA  83 82
JJQ57_RS22920 4822457 .. 4822486 - -12.1  -4.02022   GGCAACGAGTAGAAA       TGAAGGAAGGCGG CTTG CCGCCCTCCTCCG        GAGCGCCACGGAGCA  83 113
JJQ57_RS22905 4819695 .. 4819716 -  -8.7  -3.95036   AACGATCCGAAAGAA           GCGCCATCA GCTT CGATAGCGC            CTCTTATATGGAAGA  71 210
JJQ57_RS22900 4818792 .. 4818834 - -12.1  -2.57795   TTCATGACGAACTCA CACCTCATGGAGCGGGGTAT ATAC ATACCCCGC-CCATGTAGCA GAACTTAGTTGTATT  65 30
JJQ57_RS22895 4818013 .. 4818026 -  -2.3  -4.72486   GACAAACCGGAAAAA               CCCAT CCAT AGGGG                AAGTTAAGAGCAGCT  72 67
JJQ57_RS22890 4815327 .. 4815337 -  -4.6  -3.53012   TGCTGCGTTTGGAAA                 CCCG AGG CAGG                 ACACCAGACCTGTTG  52 141
        pqsA NONE
JJQ57_RS22875 NONE
JJQ57_RS22870 4810846 .. 4810866 -    -4  -3.01924   CACCGTGGTTCAACA           TGGCGATGC CTCA GCA-CACCA            GCACCTCGCCCAATT  45 15
        pqsD NONE
        pqsE NONE
JJQ57_RS22855 NONE
JJQ57_RS22850 4806478 .. 4806499 -  -8.7  -3.27653   ATTGCTACTACAACA           CCGCGCT-GG AAT CCGAGCGCAG           CTTCCTGCGCTTTCT  58 138
        nadA 4803558 .. 4803568 -  -8.2  -3.72324   CAGCCTGACCAACAA                 CGCC ATC GGCG                 TGCACCAGGCCCGGG  65 310
JJQ57_RS22830 NONE
JJQ57_RS22825 4800749 .. 4800764 - -11.8  -5.75342   CGCCCCGAAAAAAAA              GGCCGC ATCC GCGGCC               TTTTTCATTTTTCAT 100 51
JJQ57_RS22810 4798634 .. 4798650 -  -5.8  -3.20723   CCTTGATCAAGCCAA              TACGCC GGTCT GGCGCA              TGGCCTGACGCAGCG  51 0
        bamC NONE
JJQ57_RS22800 NONE
        purC 4795919 .. 4795953 -  -4.2   -3.1505   ACCAGCTTGTACGAA     GAACGCGAAGCTTTCT TGA AGATTTTTTCGCGTTC     TTTCAGATGGTTGCG  47 53
JJQ57_RS22790 4795761 .. 4795790 - -16.5  -5.07652   TCCCCCAAAAGAAAA       GGGCTCCAGAAGC GTAA ACCTCTGGAGCCC        TTGTATATGGCGGAG 100 33
JJQ57_RS22785 4794235 .. 4794252 -  -3.4  -2.81072   GTGAGCGAAGAGAAG             GAACCA ATCGCA TGGCTC              GTCGAATTCGAGAGC  41 487
JJQ57_RS22690 4782741 .. 4782755 -  -4.2  -4.44448   ATGATCGGAAAGAAA               GGCC CTTTATC GGCC               CTGAGTTTACGGTCT  70 260
JJQ57_RS22630 4774711 .. 4774725 -  -4.2  -3.05384   GTCGGGGTCAGGCAA               CGGC CTTGCGC GCCG               GGATCGGCCGCGTTT  45 3
JJQ57_RS22625 4773968 .. 4773990 -  -3.4  -3.92869   CCACGCACCGACAAA           GCCCTG TAGTAGTTGCG CAGGGC           TTTGTTGTATCTGCG  56 130
JJQ57_RS22620 NONE
        dnaB NONE
JJQ57_RS22610 4770847 .. 4770870 -  -8.2  -2.86271   CCTCCATCAGAATCA          TCGTGAAGCGC TTG GCGCCT-ACGA          CTACGGTCCAGGAGC  55 44
JJQ57_RS22605 NONE
JJQ57_RS22600 NONE
JJQ57_RS22595 NONE
JJQ57_RS22590 NONE
JJQ57_RS22585 4768240 .. 4768259 - -12.8  -5.27335   GCGTCGAAACAAAAA            GCCCCGGC AGAT GCCAGGGC             TTCGGTGGTGACTTT 100 98
JJQ57_RS22580 4767638 .. 4767654 -  -9.4  -4.25104   CGGTTTCGAGGAAAA              CGCCGA TGTGG TCGGCG              CGATCAATATTCTAA  80 523
JJQ57_RS22570 NONE
JJQ57_RS22565 4766219 .. 4766238 - -10.7  -3.95073   CTCCAGATGCAGAAA            GCCCAGG TCATTG CCTGGGC             CTTGTAGTGTGGTGC  79 35
JJQ57_RS22560 NONE
JJQ57_RS22555 4765557 .. 4765571 -  -5.6  -2.83164   GCATCCATCAGCACA               CCCTCA GAA TGTGGG               CCAGGTTCCCCCGCG  48 3
JJQ57_RS22550 4764828 .. 4764842 -  -7.1   -3.2614   TACGTGGTAGATCAA               CTCCC GGCCA GGGAG               CGGGCTTTCGGGGCG  55 145
JJQ57_RS22545 4764030 .. 4764044 -  -7.2  -3.87815   CCCCACCCCTATAAA               TGAGAA TTT TTCTCA               TTTAGCTCGATTTTT  68 128
JJQ57_RS22540 NONE
JJQ57_RS22535 NONE
JJQ57_RS22530 NONE
JJQ57_RS22525 NONE
JJQ57_RS22520 NONE
JJQ57_RS22515 4758297 .. 4758321 - -12.2  -4.44046   GTCACCTCAAAGAAA         GAA-GGGCCGG TCTC CCGGCCCCTTC          CAGTTAGCTGGCGGT 100 29
JJQ57_RS22510 NONE
JJQ57_RS22505 NONE
JJQ57_RS22500 4756819 .. 4756862 -  -3.7  -4.20368   TCAGGCGAATAGAAA CGCAGCGGGGCGGACGGATG AGCGA CATCCG-CCGTTCGGCTGTA CGGGCCTAGCTGCGT  63 67
JJQ57_RS22495 4756169 .. 4756201 - -10.7  -3.88291   CATGATCTCCAGAAA     CGA-CGAA-GCCCGC TCAAG GCGGGCTTTCGTTCG     TCGCGATTGGGTTAG  79 37
JJQ57_RS22490 NONE
JJQ57_RS22485 NONE
JJQ57_RS22480 4754763 .. 4754775 -  -3.3  -3.55563   AGCCCAGGCGGCAAA                GCGTG CGT CATGC                CTGGCCCTCCTGCTC  51 20
JJQ57_RS22475 NONE
JJQ57_RS22470 NONE
JJQ57_RS22465 4753282 .. 4753296 -  -8.5  -5.71983   TGAAGCACAAAAAAA               CCCGC ACGCG GCGGG               TTGGTCGGTATTGGT 100 45
JJQ57_RS22460 NONE
JJQ57_RS22455 4752044 .. 4752061 - -12.7   -4.8622   GGCTCCAATGAAAAA             GCCCGGA ACGC TCCGGGC              AAAACGAAGGACTAG 100 315
JJQ57_RS22450 NONE
JJQ57_RS22445 4749104 .. 4749122 -  -2.4  -3.04799   TAGAAGCGCTCAAGA            GCCGTCG CCATGT CGA-GGC             CACTCCCTGTTCATT  41 1
JJQ57_RS22440 NONE
JJQ57_RS22435 NONE
JJQ57_RS22430 4745480 .. 4745497 -    -4  -5.37345   TCCAAGCATAAAAAA             TCCCGC TCTTTG GCGGGC              TAGGTTTTCGTGTGC  88 44
JJQ57_RS22425 4743358 .. 4743374 - -13.7  -5.28176   TCCAGGCACAAAAAA              GCCCGCA GAG TGCGGGC              TGGTCATAGAGTCTC 100 51
JJQ57_RS22420 NONE
JJQ57_RS22415 NONE
JJQ57_RS22410 NONE
JJQ57_RS22405 4741540 .. 4741581 - -21.1  -4.37092   ACGCTCGCCAGAAAA GA-CAAAGCCCCCGGAACGC CAG GCATTCCAGGGGCTTTGCTC ATATGTAATGGCGGA 100 226
        wapB 4739896 .. 4739924 -  -4.4  -3.21099   CTGCCGGAGGACGAA       CTGCGC-CGCCGA CTGA CCCGCGTGCGCTG        GGAAAATCCGCCGAG  47 348
JJQ57_RS22390 NONE
JJQ57_RS22385 4737646 .. 4737675 - -14.9  -2.64099   GGCCGGCACGACAAC       CTTCTCGCGGGCG AGCG CGCCCGCGGGACG        CCGCCACGGCAGCGC  74 65
JJQ57_RS22380 NONE
JJQ57_RS22375 NONE
JJQ57_RS22370 4732871 .. 4732883 -  -4.7  -3.18681   TGCCAACCGCACGAA                GCTCG CCG CGGGC                GCTACCCATGAAGTG  48 313
JJQ57_RS22360 NONE
JJQ57_RS22355 NONE
JJQ57_RS22350 NONE
JJQ57_RS22345 4728675 .. 4728693 -    -3  -2.71712   CCTCCTCGGTCAAAT             CGGGTCCC AGG AGAACACG             TCCGGGCTGCGCGCC  40 1
JJQ57_RS22340 4727520 .. 4727535 -  -4.6  -5.00616   GCCGTCGGCAAAAAA              CTCCGC CTGG GCGGAC               GACGGCAGCAACGCC  83 157
JJQ57_RS22330 4725524 .. 4725561 -  -6.9  -4.21194   CCTGATCACGGAAAA   GCTCGCCGCGGAC CTGGAAGTCGCC GTCCGCGCCGCGC    AGACCGCCCATGAGA  72 429
JJQ57_RS22320 NONE
JJQ57_RS22315 4722460 .. 4722479 -  -2.8  -2.63623   TTGCTGAAAACACAC            CTTGATTC GGTC GAACCTAG             AGAACCACGCGCAAG  39 22
JJQ57_RS22310 NONE
JJQ57_RS22305 4720926 .. 4720960 - -10.1  -4.93696   TTCAAACATGAAAAA     TCAAGCGTTTAGAGC CTAAC GCTCTCAACCCTTGA     CAAGCTGCTTTCCAT 100 210
        rmuC 4718865 .. 4718889 -   -15  -2.52464   CGCTCGCTGAACGGA          CGGCGCGGAA CTTTC CTCCGCGCCG          TGGCTCTGAACAGCC  74 150
JJQ57_RS22275 4713585 .. 4713600 -  -5.4  -3.01791   ACTGCCCTCCGAACA              GGCGAT GCTG ATCACC               CTGTTCAGCGGCTTC  47 233
JJQ57_RS22250 4710893 .. 4710912 - -12.1  -4.45945   AGCCATGAACGAAAA            CGGGGGC TTCGAC GCCCCCG             TTCTGCTCCGCGCCG 100 47
JJQ57_RS22245 NONE
JJQ57_RS22240 4709602 .. 4709618 -  -3.5  -3.01791   AGGCGCTGGGGAAGA              TCCGCCG CAC CGTCGGC              TTCAACCTGTTCCTC  44 124
        dinG 4706878 .. 4706894 -  -4.3  -2.94924   CCGGCATGGACAAAT              GCCGGGA ATT TCCCGAT              GCGGCTCGGACGTGA  44 71
JJQ57_RS22225 NONE
JJQ57_RS22220 4703156 .. 4703184 -  -3.7   -4.0098   TTGGAAGTGAAAGAA        GGCGAGCCCGATG GAA CATTCGGCTCAAC        CGCCGGTCACATCGC  61 174
JJQ57_RS22215 4702218 .. 4702230 - -10.5  -2.57931   TTGATCCGGGACAAT                GGCGC CAA GCGCC                CTGCCCCGGTTCGGC  59 41
        pdxH NONE
JJQ57_RS22205 4700368 .. 4700399 -  -2.2  -2.56095   TGCACAGTGAATCGA      TTGATCCGC-CCG TTACCCG CGGCGCGGAACGA      GCAATTGCAGCCCCA  38 6
JJQ57_RS22200 4698867 .. 4698886 -  -3.4  -2.90075   CCCGCTTCAATCAGA            GCAGCACA AGGC TGAGCAGC             CATACCGCGAGCATA  42 1
JJQ57_RS22195 4697618 .. 4697651 -  -5.9  -3.17194   ACTGGCCGAAGCCAA     GGCCAGCAAGGTGAAG CGG CGCGACCT-GCCGGCC     TGGCTGGAGCGCGCC  51 49
JJQ57_RS22185 4696762 .. 4696782 - -15.4  -4.53034   GCGACACAACGAAAA            CGGCCGGC GAAGT GCCGGCCG            TGGGACAACGAGGGA 100 45
JJQ57_RS22180 NONE
JJQ57_RS22175 NONE
JJQ57_RS22170 NONE
JJQ57_RS22165 NONE
JJQ57_RS22160 NONE
JJQ57_RS22155 4690606 .. 4690653 -    -9  -3.05384   GCGCGTCCGAGTCAA GGGAATCTCCACCACGGGCGCCG TCA CGGCGCCGGAAAAAG-GACTCCC AGTATAGGCAGCCGA  60 91
JJQ57_RS22150 NONE
JJQ57_RS22145 NONE
JJQ57_RS22140 NONE
JJQ57_RS22135 4687540 .. 4687556 -  -7.9  -3.63515   CGCCAGGGTGAACAA              CCAGGGG CTG CGCCTGG              ACCGCCCGGAACACG  63 281
JJQ57_RS22125 4686235 .. 4686247 -  -3.3  -3.72576   GCGCCCTGGAGGAAA                TGGGC GAG GCGCA                ATACCAGCTCGGCCT  53 403
JJQ57_RS22115 4684975 .. 4684987 - -10.5  -3.08813   CCGGAGTGCAATAGA                GCCGC GTC GCGGC                GAAATGTTCAACCCT  62 33
JJQ57_RS22110 NONE
JJQ57_RS22105 4680615 .. 4680630 - -11.8   -4.2558   CAGCGCCTACGAAAA              CGGCCC TCAC GGGCCG               TTTTTTTATGCCGAG  91 50
JJQ57_RS22075 4674929 .. 4674947 -    -3  -4.90778   TCGAGCGAAAGAAAA             CCGCCCTG GAT CAGTGCAA             CGTCGCTTTTTCCGC  75 17
JJQ57_RS22070 4674453 .. 4674477 - -18.7  -5.37593   CGGCAAACGAAAAAA          GGCCCGATATC GTC GATATCGGGCC          TTTCCCATGCTTCCG 100 58
        flgB NONE
        flgC NONE
        flgD 4672671 .. 4672690 -  -2.7  -3.53012   GCTCCTTGCCGGAAA            CGCCGGC TTACTG GCCGATG             ATCTGTACTTTGGAC  47 13
        flgE 4671162 .. 4671184 -  -8.5  -5.26316   GGATTTTACAAAAAA          GAAAGCCTCC TTTC GGAGGC-TTC           GGGGGCAACCCCTGG 100 103
        flgF NONE
        flgG 4669428 .. 4669447 -  -3.4  -2.58714   GTTCATATCAAGCTA            CCTCGCGG CGTA CAGCCAGG             GCCCGGTCAGGGCCC  39 42
        flgH NONE
JJQ57_RS22030 NONE
        flgJ NONE
        flgK 4664326 .. 4664337 -  -2.2  -3.26449   GTCGAGAGAACTCAA                CGGA ACGC TCCA                 ATCAGGGTATCGAAC  45 10
        flgL 4662940 .. 4662962 - -17.8   -4.4078   CCCTGCGAACGAAAA           GGCCCATGAC GGA GTCATGGGCC           CTGTTCCACAGAGGG 100 45
JJQ57_RS22010 NONE
JJQ57_RS22005 NONE
JJQ57_RS22000 NONE
JJQ57_RS21995 4659450 .. 4659467 -  -3.3  -2.52543   ATCGTCCTCAACTGA             TGGTCAG GCCG CCGTCCA              TCACCAGGGTCGTGC  39 0
JJQ57_RS21990 NONE
JJQ57_RS21985 NONE
JJQ57_RS21980 NONE
JJQ57_RS21975 NONE
JJQ57_RS21970 NONE
JJQ57_RS21965 4650804 .. 4650833 - -21.5  -3.00298   CCTCTCAATGAGATA       CGAGGGGAAGCGC GCCA GCGCTCCCCCTCG        TGACTTCACCTTGAC 100 52
JJQ57_RS21960 NONE
        fliD NONE
        fliS NONE
        fliS NONE
JJQ57_RS21940 4647619 .. 4647655 -  -5.2  -5.49234   AGAGGCAATAAAAAA   CCCCTA-CAG-ACCGCAT GGA AAGCAGTACTGGCAGGGG   TTTTTGGGGATATGT 100 94
        fleQ 4645981 .. 4646006 - -11.9  -3.54935   CAAAGCGTTGCGAAA         CGACCTGTCAA TCAT CCGACAGGTCG          TCGTCGCGCCGGCTC  75 7
        fleS NONE
        fleR 4643209 .. 4643227 - -13.1  -3.35679   GCGGCGGACGCATAA             GGCCCGC ACGAG GCGGGCC             TGGGGAACATGGCGA  74 45
        fliE NONE
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ 4637002 .. 4637021 -  -9.2  -2.74488   GAAGTACGGCAACCA            TCGCCTGG ACAA CCCGGCGA             GCCTCAGCGGCGGGG  55 224
JJQ57_RS21875 4632678 .. 4632721 -   -21  -2.50016   CTGGAGCAGGAATAC CTGGTCGAGGTCGCCGGCGAC CTG GCCGCCGGCGGCCTCGAGC-G CCTGCGCCACGGCCT 100 268
JJQ57_RS21865 4631410 .. 4631422 -  -3.3  -3.41073   GATGGCATTCAAAGA                CAGGC CCG GCATG                CGTTCTCTCCTTCCC  49 116
JJQ57_RS21860 4629775 .. 4629814 -  -2.8  -4.73613   CCATCATGAAGAAAA CCGTCGCGCCGAAAGCCG CCAAGC CGGCTCCC-GCG-GTCGA  AACCCGCGAGTCCAT  75 484
JJQ57_RS21845 4627523 .. 4627544 -  -8.7  -2.52464   GCCGCTCTGAAGCTA           GC-GTCCGCC GAC GGCGAACTGC           AGTTCCGCCAGGCGC  53 1
JJQ57_RS21830 4623539 .. 4623589 -  -7.5  -3.79113   ACTGCGCGACAAGAA CGCCCGCC--GGCCGACCCTCAGCC TGG AGCTGAGCGCGGACCCCGGCAAGCG CCTGCGCGACGTCCG  66 96
JJQ57_RS21800 4619159 .. 4619215 -  -9.4  -5.13521   AAACGAGCGAAAAAA CACGCTCCGG-C-GGCGCCGCTCGGCA CCCCAT CGCGGAGCTGAGCCAGGCCGGAGCG-G AGCCGCAGGCGCAAC 100 44
         dgt 4616868 .. 4616880 -  -4.7  -2.79302   AGCAGTTCGACGACA                GCGCG CAT CTCGC                TCCTCCGCTTACAGC  44 34
JJQ57_RS21785 4615678 .. 4615690 -  -5.5   -2.8474   CTGGATGTACAAGCA                CTGGA AGG CCCAG                CAACCGCAGATGGAA  46 458
JJQ57_RS21770 NONE
JJQ57_RS21765 4612632 .. 4612648 -  -9.3  -3.04144   TCGGCACGCGCAAGA              CCCGCCG CCT CGGCGGT              CTCAGCCTCAGCGCG  57 334
JJQ57_RS21750 4609621 .. 4609652 - -11.6  -2.90496   TGGCGCGGCAAAGGA      GCAGCGCCC-TGCGA CGC TGGCACGAGCGCTGC      CTGATCGCCTGGCTG  63 98
JJQ57_RS21730 4606677 .. 4606727 -  -5.4  -3.99592   AGCCACGACGAGAAA GGCGCGATCAT-C-GCC-GAACTGG AGCG CCAGGTCTGGCCGCACGTGCGCGCC GGCGCTGTCCGGCCG  63 149
JJQ57_RS21720 NONE
JJQ57_RS21715 4603824 .. 4603843 - -16.4  -3.28001   CAGGCTGAAAGGGAA            CCCGGCGC CATG GCGCCGGG             TTTTTCGTTTGCGGA  88 80
JJQ57_RS21685 4597043 .. 4597056 -  -5.9  -4.12188   GCAGCACCTGGAAAA               CGCCG TGCG CGACG                GCAACGACCTCGCCG  66 479
JJQ57_RS21660 NONE
JJQ57_RS21655 4588640 .. 4588666 - -19.6  -4.56358   GATATCTATACAAAA         GCATGAGGCTTC ATT GAAGCCTCATGC         TAAATTAATAATTAT 100 41
JJQ57_RS21625 4579168 .. 4579180 -  -3.4   -3.1637   ATAGATGCGCAGGAA                GATG GATTT CATC                GGCGAGCCCCCGGCC  44 108
JJQ57_RS21620 4577431 .. 4577445 -  -3.5   -4.2803   GAGTCCAACTGAAAA               GGACT TTTTT AGCCC               CTGGCGGAATACCCG  64 143
JJQ57_RS21615 4577001 .. 4577018 - -12.7  -4.46212   CGCTGGATGACAAAA             GCCCGTC TCGC GACGGGC              TTTTGCTTGCGGGAA 100 41
        tcdA 4570490 .. 4570510 -    -9  -3.57144   GCCTGGACGTGGAAA           CCCTGCTCG AAGC CGAGC-GGG            CGCGCTACCTGCATG  64 340
JJQ57_RS21575 4567797 .. 4567829 -    -2  -4.60648   AAAACAGCAAATAAA     CCTGTACG-TCCGAA CTTC TTCGGAACGTGGAGA      AAGCAATAGCGAGAG  68 429
JJQ57_RS21570 NONE
JJQ57_RS21565 4566537 .. 4566566 -   -10  -2.84574   GACGCCAAGCAATCA       GGCCGCGAT-GCG TTTGC CGCCATCGAGGCC       GTCATGTCCTGGGAT  61 246
JJQ57_RS21545 4563949 .. 4563969 -  -7.6  -3.66256   CACAGCCCCAAAACA            TGGCCTTC CGGGC AAAGGCCA            CCCGCACCGCCCGAC  62 203
        lasI 4563150 .. 4563161 -  -7.2  -3.58726   CTCTCCGACAGAGAA                CGCG CCGG CGCG                 AGCCGACAGGTCCCC  62 42
        mexM 4559052 .. 4559086 -  -9.2  -3.58343   CGCACCAGCCGGAAA    TCCCGGCGC-GCGGC GTCACG GCCGCCGCTCCGTGA     CCTGGGCCAGGCTCG  68 6
        mexN NONE
JJQ57_RS21515 NONE
JJQ57_RS21510 4553286 .. 4553311 -  -2.3  -4.63218   GGCGCCGGAAGAAAA         GCCCGCCCTGC TCAA GCCGCGCACGC          ACTAAGGAGCGCCGC  68 458
JJQ57_RS21495 4551215 .. 4551232 - -12.7  -4.85782   CTCCGGAAAAAGAAA             GGCCTCC CGCA GGAGGCC              CAAAGGGGAAATGCA 100 51
        fliL NONE
        fliM 4549514 .. 4549530 -    -3  -2.52464   CTCCGGGGGAAGCGA             TC-AGCG CGAG CGCTCGA              CCGCTTCGAGAATCT  39 9
        fliN NONE
        fliO NONE
        fliP NONE
        fliQ NONE
        fliR NONE
        flhB 4545504 .. 4545518 -  -2.8  -3.67976   TCCATGAACGGCAAA               GCTC TCATCCC GAGC               GGGTATCGGCCAAGG  51 73
JJQ57_RS21450 4544242 .. 4544252 -  -6.8  -2.53641   GAACCCATTACCAAC                 TGCC CGA GGCA                 CCGCCTCCGCCGCTG  48 7
JJQ57_RS21445 4542868 .. 4542879 -  -2.2  -3.27298   TTCGCCAATCACCAA                CTGCC GGA GGC-G                CCACCACCGCCACTC  45 7
        flhA NONE
        flhF NONE
        fleN NONE
JJQ57_RS21425 4537437 .. 4537456 - -12.8  -2.88999   TCCGTACAGACCAGA            GCGCGCCC CAGG GGACGCGC             CACACATTCTTTTGC  70 73
JJQ57_RS21420 4537005 .. 4537021 -  -2.2  -2.78395   AATCGTTACCAAGCA              CCATGA CACCC TCTTGG              CCGGCTTCAGCCGTT  39 32
JJQ57_RS21415 4536083 .. 4536104 - -11.5  -3.34398   GTCCTGCCGGAAATA           CCGGCCCGG CTTT CCGGACCGA            CTTCAGCCCGCCCGC  69 141
JJQ57_RS21410 NONE
JJQ57_RS21405 NONE
JJQ57_RS21400 NONE
        motD NONE
JJQ57_RS21390 NONE
JJQ57_RS21385 4528975 .. 4528990 - -11.8  -4.09739   CTAACCTCTCGAAAA              CCGCCG CAAG CGGCGG               AAGCTGTCTATCAAT  83 36
JJQ57_RS21380 4528476 .. 4528496 -  -2.6  -2.52464   TGTCGGTCGAACGCA           TCAGATGCT GCCC AGC-TCCGA            CCATTCTTCCTCGGT  37 5
JJQ57_RS21375 4527988 .. 4528008 -  -8.2  -2.59191   TGACACTGGCAGAAG            TGGCGAGC CGCCT GCTCGCCT            GAAAAGCGCCAGCGC  53 55
JJQ57_RS21365 4526204 .. 4526214 -  -8.2  -3.89822   GACCGATTCTAGAAA                 GCGG CAG CCGC                 GCGATTAATAGGACT  71 67
JJQ57_RS21360 NONE
JJQ57_RS21355 4524843 .. 4524860 - -12.7  -2.70932   GCTCTCCTGGAATGA             GCGTGGC GACA GCCACGC              ATCGACAGGGAAAGT  68 120
JJQ57_RS21350 4523588 .. 4523624 -  -7.1  -3.28001   CACGTCGAAACCGAA    GCGCCGGAACCGGAATC CGC GAGAGCGGTCCCAGCAC    AGTCCACCTGCCACT  55 485
        ccmA NONE
        ccmB 4520004 .. 4520031 -  -7.6  -3.34398   GGCTCTTTGGAAATA        CCGGGCAGAC CTTCCGCT GCCAGCCCGG         GTCAAGCGTGGGCGG  58 89
JJQ57_RS21320 NONE
        ccmD NONE
        ccmE NONE
JJQ57_RS21305 4516581 .. 4516595 -  -4.2  -3.01712   TCGCTCGTTTCAAGA               CTCAGG CTC CCTGAC               CGGCGAGGCCCAGGG  45 12
        dsbE NONE
JJQ57_RS21295 NONE
        ccmI NONE
JJQ57_RS21285 4513456 .. 4513469 -  -2.3  -3.41051   CTACTTCCACGACAA               CGTGC TGGA GGACG                AGGTGCAGTTCATCC  46 463
JJQ57_RS21275 NONE
JJQ57_RS21270 4510035 .. 4510049 -    -7  -2.52464   GTGGCTGGGAATGGA               CGCCGG CAC CCGCCG               CGAGGACCTCTGCCA  47 391
        eutH 4503757 .. 4503777 -    -9  -2.64155   CGTTGCGGAAAGCGA           CGCC-GCGA TGGC TCGCCGGCG            CTCGTCGGGGGATGT  56 42
JJQ57_RS21240 4503318 .. 4503341 - -18.2  -4.72272   CCGCTCGACGAAAAA          GCCGGAAGCG CTCG CGCTTCCGGC           TTTTTCATTCGGCTT 100 61
JJQ57_RS21185 4490175 .. 4490197 - -10.5  -3.11619   GAAGAAGGGAGCGAA           GGCCCGGTC CTGGT GAGCGGGCC           GCAAGCTCAACCGGC  64 32
        moaA 4487874 .. 4487905 -  -7.3  -3.27022   GGCATGGGAGAGGAA     GCGGCGGATGGC-GC CGTT GCTGCCATC-GCCCC      AGGAGGATACCGTCA  58 38
JJQ57_RS21170 4487076 .. 4487111 -  -5.5  -3.07043   TCCACGAGGCCAACA   TCACCGACCGCC-GCAA CCAG TTGCTGGTGG-CGGTAA    GCATCGGCATGGGCA  47 318
        uraH 4473271 .. 4473290 - -12.1  -5.26875   CCGCGAACGAAAAAA            GGCCCGC TCGACG GCGGGCC             AGGGAAAAGGACTCA 100 67
JJQ57_RS21100 4470545 .. 4470575 - -20.6  -3.53224   GACTCCCGGCGGAAA       CGAAAAAGCCCCGC ATC GCGGGGCTTTTTCA       TGCTTCGGATCAGGC 100 35
JJQ57_RS21070 NONE
         smc 4458620 .. 4458632 -  -9.1  -5.62552   AAAAAAATGAAAAAA                GGACG TCC CGTCC                CTTGAAACGTGGAGC 100 130
        zipA 4457633 .. 4457650 - -11.3  -4.54727   TCCGTGAAACGAAAA             GAGCAGC CTCG GCTGCTC              TATAGAGTAGTTCGC  95 77
        ligA NONE
JJQ57_RS21050 NONE
         ffs 4454572 .. 4454602 -  -5.3  -4.56775   ACGGCCTGCGAAAAA       TGGCGGGCCTG AAATGGAGG CGGCCCCGCCA       GCCACACCCCGGCAC  74 18
        dnaX NONE
JJQ57_RS21030 4451205 .. 4451218 -  -2.3  -2.73741   ACGCAGAATCAGAAG               GGCAT CTTG AAGCC                GGGCGGCAGTTGCAT  39 5
        recR 4450465 .. 4450479 -  -5.6  -3.66803   TTTCAATACGGGAAA               CTGGCC ATC GGCGAG               GGCGTATAGGCCGCC  57 69
JJQ57_RS21020 NONE
JJQ57_RS20970 4441041 .. 4441073 - -13.4  -2.75844   CGGGTGATCTGAAAG      CGCACCGCCCTGCC CGCAC GACAGGGCGGTGAA      TCCCCGCCCCTTCTA  72 38
JJQ57_RS20895 4426440 .. 4426473 -  -4.6  -2.63079   CCCTCAGAGAAGTCA    GTCGC--CCACGCCTCG ATG CGAGG-GTGGTTGCGCC    GCAGCTTATGAGGGG  43 57
        cprA 4425227 .. 4425253 - -15.9  -2.62933   CAACCGCTGAGATCA        GGCCGCGGGGAG GAAG CTCCCCGCG-CC         TGCCGTCACTTGAAG  77 31
        rlmM 4419102 .. 4419119 -  -2.6  -3.66556   AACTCCGCAACAGAA             TCCGCG CATTGT CGCGCA              TGCGGCGCGGCCGGT  49 72
        tusA 4418662 .. 4418679 -  -4.1   -3.5627   ACATCATGGGCGAAA             TCATGGC CAAG GCGATGA              GCGGGAGCCTGGAGC  51 188
JJQ57_RS20835 4410766 .. 4410781 -  -2.4  -5.01535   CTATAACCAGAAAAA              CCCAGC GGTA GCCGGC               AAGCTGGCACGCCGG  77 407
JJQ57_RS20825 NONE
JJQ57_RS20820 4408860 .. 4408874 - -12.8  -4.39166   GGGCAGACAGGAAAA               CCGGCC GCA GGCCGG               TTTTTTCTTGGCCGC 100 104
JJQ57_RS20805 4406721 .. 4406731 -  -6.8  -3.01712   CGCGCTGTTCGAATA                 CCTG CTG CAGG                 TGCCGGCCAACCGCA  51 217
JJQ57_RS20795 4405674 .. 4405689 -  -2.5  -3.54488   CGGGCGCAAAGAATA              CGGACC GACCA GG-CCG              CCGCCAAGCCCGGCG  49 43
JJQ57_RS20790 NONE
JJQ57_RS20785 4404570 .. 4404584 -  -9.2  -5.71712   CCGGACACAAAAAAA               CCGCCC CGG AGGCGG               TCTTTTTGCAAGGAA 100 48
        sdhC NONE
        sdhD NONE
JJQ57_RS20765 NONE
JJQ57_RS20760 4399603 .. 4399631 -  -5.3  -3.90761   CAACTCATATAACAA       CTGC-GAGAGGA TCAGGT TCCGCTCTGCAG        CAGCATATTACGCAC  60 8
JJQ57_RS20755 NONE
        odhB 4395211 .. 4395236 -   -14  -2.72144   TTATTCGGGTGAAAC         CGGACGGCCCC ACGAG GGGGCCG-CCG         TGAAGAGAAACGCTA  72 43
        lpdA 4393599 .. 4393635 - -25.3  -3.53012   GTGGTTCTTCTGAAA    GTCTGCCGCCTGCGTCA TCC CGACGCAGGCGGCAAAC    CGTGGATTCTACAGA 100 139
        sucC NONE
        sucD 4391306 .. 4391343 - -21.4  -3.50572   ACGGATGCGATAGAA   CGACGAAGGCCACCGC TGTGAG GCGGTGGCCTTCGTCC    TGGAACTCAGAAAAC 100 49
        brnQ 4389703 .. 4389720 - -14.1  -4.72272   TCGGCTCATGAAAAA             GGCCGCC CGGA GGCGGCC              TTCCTGGGGTTCGCC 100 48
JJQ57_RS20725 4388618 .. 4388656 - -13.1  -3.77775   GAAAGAGGAAGACAA  GGCAGCGGCCCCGGCAGC TCCG GCTACCGAGACC-CAGCC   GAGCGCTCCGGCTAC  83 202
JJQ57_RS20715 NONE
JJQ57_RS20710 NONE
JJQ57_RS20705 4386162 .. 4386182 -  -5.4   -5.0538   GCTTATGCGAAAAAA           CCG-CGCAC CGTC GTGCGACGA            CTAGCGTTCGAGCAG  83 26
        htpG 4384122 .. 4384149 -   -20  -4.13014   GCGAGAGTTGGAAAA        GACAAAGCCCGC CGAA GCGGGCTTTGTC         GGGGCTACTGCTTAA 100 37
JJQ57_RS20695 4383272 .. 4383299 -  -9.1  -3.57144   GCCTCGACCGGGAAA        TCGACGAGGCG GCCCGG CGCTTCGCCGA         GGACGTGCGCGAAAG  64 94
JJQ57_RS20685 4381287 .. 4381297 -  -8.2  -3.17794   AACCGATCAGCAACA                 GGCG CAA CGCC                 TCGACCGGCAGGGCT  56 401
JJQ57_RS20655 NONE
JJQ57_RS20650 4374302 .. 4374331 - -10.7  -4.08767   CGTACGCCGCCAAAA       CGGCGGATAACCG CGGG CGGTTATTCGCCC        TACCGCACGCAGGCA  82 120
JJQ57_RS20610 NONE
JJQ57_RS20605 4363468 .. 4363489 -  -2.9  -3.01712   CGCCGTGGCGCAACA           GCCAGAGCT TCAC AACTTCGGC            TCTTCGTCGCGCGCC  43 13
        sixA 4362958 .. 4362974 -  -2.1   -2.8092   GAATATTCCATCACA              GCCAACC GCA GGCAAGC              CGGGAAATGTTTCGG  39 67
JJQ57_RS20595 NONE
JJQ57_RS20590 4360391 .. 4360411 -  -7.6  -4.15565   TCTATCAGGGGAAAA            GCCCAACA AGATA TATTGGGC            ACTGTTGCAAAGTTA  72 75
JJQ57_RS20585 4359244 .. 4359270 - -16.7  -4.12267   ACTACAACAAGTAAA         CCCTGATGCCA GTAAG TGGCATCAGGG         TTTAGATCAAAACTT 100 39
JJQ57_RS20580 NONE
JJQ57_RS20575 4356932 .. 4356961 -  -3.5  -3.73253   GAGAAACACAAAAAG       GAGAACCAGAGCA ACGC TTCTCTGCTTCAC        GAGTACCACCCATCT  54 22
JJQ57_RS20570 NONE
JJQ57_RS20565 NONE
JJQ57_RS20560 NONE
        wecB NONE
JJQ57_RS20550 NONE
JJQ57_RS20545 NONE
JJQ57_RS20540 NONE
JJQ57_RS20535 4347091 .. 4347119 - -16.1  -4.42653   ATCGTACGGAGAAAA        CAAAAAAGGCCGC TAG GCGGCCTTTTCCG        GAGAACGATGACTCA 100 38
JJQ57_RS20530 4346548 .. 4346569 - -12.9  -3.85909   GGAGCCAAATTCAAA           GCCCTCGGC ACAT GCCGGGGGC            TTTTTCGTTATCGTG  83 68
        uvrB 4342786 .. 4342806 -  -2.3  -3.15544   CCGCAGGTCGACGAA            CGCCTCGCG CAA CTCGCCGCG            CAACTGGGCAGCCAG  42 218
JJQ57_RS20500 NONE
JJQ57_RS20495 4337817 .. 4337842 - -17.6  -5.00616   CCCCTCCCCAAAAAA         CGAGGCCCGC AACTGG GCGGGCCTCG          TCATCGACTGTAGAA 100 50
JJQ57_RS20490 4337571 .. 4337584 -  -3.7  -3.68023   AATCCGCAAAACCAA               CCGCG TATT CCCGG                CAATTTGGTGGAGCT  56 31
JJQ57_RS20485 4337465 .. 4337475 -  -2.4  -3.39717   ACGGATGAACATGAA                 GTGG CGT CCCC                 TAGGGGACTCGAACC  47 16
JJQ57_RS20480 4337272 .. 4337288 - -13.7  -3.67175   ACCTTCGAAAAGTAA              GGCCAGC GAT GCTGGCC              TTGGAATGTGGTGGA  81 34
JJQ57_RS20475 4337123 .. 4337147 - -16.5  -5.43553   AGGGAAAAAACAAAA          GGGCCATTCCA ATT CGGAATGGCCC          TATAGAGCCCCGCAG 100 53
JJQ57_RS20470 NONE
JJQ57_RS20465 4335513 .. 4335551 -  -5.1  -3.59979   TTCCTCGATTCGAAA  CGGCTCGCCCCGC-CGGA TCGC TCCGCGCGGGCCACAGCG   CTTTTTACCGAAGAA  55 79
JJQ57_RS20460 4334850 .. 4334864 -  -2.7  -2.52933   TCCCAACTCATCAAT               GCTGC TCCAG GCTGC               CGGCCAGTTCGCGCG  37 6
JJQ57_RS20455 4334334 .. 4334371 - -16.3  -4.12188   CCACTACCTCGAAAA   TGACAGGCGGCGGATTC TAGA GAATCCGCCGCCCGGAA    CAAAGTGCGAATGCC 100 62
JJQ57_RS20450 4333355 .. 4333369 -  -5.6  -3.05463   AGGCCTGCTACGCAA               GCTAGG CCG CCTGGC               TGAACGACACCTGCA  49 12
JJQ57_RS20435 4331130 .. 4331145 - -11.8  -5.41359   AACGAAATGAAAAAA              GGCGCC CGAA GGCGCC               TTTTTTCGATCACCG 100 48
JJQ57_RS20425 4328727 .. 4328737 -    -4  -3.16742   CTGAAGCGCTAGGAA                 GAAA AGC TTTC                 GGCCGCGGAATCGGC  47 61
JJQ57_RS20420 4328001 .. 4328031 - -11.2  -2.80492   CATGAGCACCAACTA       CCTGGAGACCATCA AGA TGATGGTCTCCATC       GGCTTGGCCTGGAGC  60 310
        leuC NONE
        leuD 4325043 .. 4325072 - -21.5  -4.91511   ACTCCAGGAGAAAAA       CCGGGCGCACCCT ACCC AGGATGCGCCCGG        CAAGGGGACTCGCGT 100 46
JJQ57_RS20400 4324230 .. 4324248 -  -8.8  -3.07816   CCTTCATTCATTGAA             CGGCGG GCATGCG CCGCCG             TGATCGAACCGTCAC  57 37
        leuB 4323078 .. 4323110 - -12.8  -2.64318   ATATGAGAGAAGTGA     GC-TGGCCGACAGCCA TCA TGGC-GCCGGCCAAGC     CCGTCAGATTACAGA  67 34
         asd 4321905 .. 4321929 - -17.1  -2.54896   CGCCCAGGCAATCGA          GGCGCCACCCA TTG CGGGCGGCGCC          GGATCGATCAGCGCT  83 33
JJQ57_RS20385 4320700 .. 4320757 -  -3.3  -2.78384   TCTCGTTTCACGAGA GGGAGTGCGTCGGTGCTTGC-TGTCCG CTCGCC CAGCCATGCATGGACGGACGCTC-CCC GGCAGCAGCGGATCG  40 93
        fimV NONE
        truA 4316990 .. 4317021 - -10.9  -4.26903   TCGATGGTAGCAAAA      GCCCGAT-TCGACG TCAGC CGACGATATCGGGC      AATCCGGAAAGGAAA  89 7
JJQ57_RS20370 4316197 .. 4316219 -  -6.1  -2.61695   GCTATCGCGAAATAT           CTGGCCTCC CTATC GGCGGCCGG           GCGTTGTCGCGGAAA  46 84
JJQ57_RS20365 4315130 .. 4315143 -  -3.1  -3.06133   CAATCGGCCAGGGAA               CGC-TG GGT CATGCG               GATACGGGGCTCGGC  43 19
        folC NONE
JJQ57_RS20355 4313168 .. 4313199 - -11.5  -2.79796   CTGCATTTTAGCAGA      GCGCG-CCCGCGAC GGTAA GCCGCGGGTCGCGG      TCAACCGCGTTCCGG  63 26
JJQ57_RS20350 4312397 .. 4312438 - -12.3  -3.38314   CTCAAGCTGGAAAGA TGGGAAGCGCGATCGGTCCG TCC CGGACC-ATCGAGCTGACCA GGGCCTCGTGGGCCG  72 171
        purF NONE
JJQ57_RS20340 4309633 .. 4309651 -    -3  -2.78384   TTGGGTTCGATCACA             GCGCGG CCAGCCC CCGGGC             CATGTCGGCCTTGAG  40 2
JJQ57_RS20335 4308816 .. 4308841 - -16.9  -5.58454   CTCATACGAAAAAAA         GGCGCTGCTCC TTTC GGAACAGCGCC          TTTTCCGCATCTCCC 100 48
        xcpR NONE
        xcpS NONE
        xcpT NONE
        xcpU 4302158 .. 4302178 -  -6.1  -2.91873   AGCAGGGTGAAACCA           CGCGCGCG CCTCAT CGC-CGCG            CCACCTCGACCCGTG  48 15
        xcpV NONE
        xcpW NONE
        xcpX NONE
        xcpY NONE
JJQ57_RS20280 NONE
JJQ57_RS20275 4298175 .. 4298185 -  -2.4  -2.76189   TAACCGACTGAACTA                 CCGC TGC GCGT                 AACTTGCGAGATTGG  39 38
JJQ57_RS20270 4297984 .. 4297994 -  -2.4  -2.76189   TAACCGACTGAACTA                 CCGC TGC GCGT                 CGGCTGGGCAAGATG  39 136
JJQ57_RS20265 4297850 .. 4297880 - -20.6  -3.68529   AGGGGACGACGGAAA       CGAAAAAAGCGGCC ATT GGCCGCTTTCTTCG       TGGCTCACCCCGCCT 100 59
JJQ57_RS20250 4293095 .. 4293113 -  -5.8  -3.73224   CCACCGTTCACCAAA             CCGGTGCG CAG CGCCCCGC             CGCGCCGACGAGCGC  60 132
JJQ57_RS20245 NONE
JJQ57_RS20240 4290035 .. 4290052 -  -6.9  -2.62184   CCTCTGCCGACACCA             GTTGCCG CTGG CGGCGAC              CCGCGAGGGTCGCCA  47 480
JJQ57_RS20230 NONE
JJQ57_RS20225 NONE
JJQ57_RS20220 4286674 .. 4286684 -  -6.8  -3.12351   GCGGCGCACATCGAA                 GCTG CCG CAGC                 CCCTCGCTCAACGGC  53 33
JJQ57_RS20215 NONE
JJQ57_RS20210 NONE
        pepN 4282783 .. 4282813 - -16.2  -4.36596   CCCAGAAGTAACAAA       GGGCGTTACCAGCC AGT GGCCAGTAACACCC       TCTTCCGGGCGAAGC 100 48
JJQ57_RS20200 NONE
JJQ57_RS20195 4278973 .. 4279015 -  -6.1  -3.05384   CCTCCCCGGAGGGAA GCGGTCGGCGCCGGC-GAGCG GAG CGATCAGCGGGTGCCG-CGGC GGCGCAAGGCCGAGG  49 9
JJQ57_RS20190 NONE
JJQ57_RS20185 4275289 .. 4275306 - -14.1  -5.40072   TCCGCGCGAAAAAAA             CCGCGGC CGGG GCCGCGG              TCTTGGCGAGGCTCG 100 48
JJQ57_RS20170 4269736 .. 4269751 -  -8.2  -2.70932   GCTGCTGGCCAACCA              CGCGGC GCCC ACCGCG               CCGGTATTCGGCCCG  52 320
JJQ57_RS20130 4260802 .. 4260819 -  -5.5  -3.14132   CGCTGCGTCCATGAA             GTTCAGC AGAA GCTGAGC              ATTAATCCAGGCAGG  51 181
JJQ57_RS20125 4255791 .. 4255814 - -15.3   -3.9941   CGCGCCAGAATGAAA          GAGCCCCGC ACTCAG GCGGGGCTC           TTGCTTGCCGTCAGT  95 50
JJQ57_RS20120 NONE
JJQ57_RS20115 NONE
JJQ57_RS20110 NONE
JJQ57_RS20105 NONE
JJQ57_RS20100 NONE
        pelF NONE
        pelG 4243020 .. 4243048 -  -9.7  -5.65513   GAGGAAGCAAAAAAA       GGAGCCGATTCA ACCGGG TGAATCGGC-CC        TTTCTGAAAGACCCT 100 58
JJQ57_RS20080 NONE
JJQ57_RS20075 4241458 .. 4241499 -  -2.2  -3.85698   GCCGCCTTCGACAAA CGCCTGCGCGA-GGACAAGG CCTT CGCCGCCGATC-CGCAGGCG CGCCTGCAATGGTTC  54 220
JJQ57_RS20055 4237147 .. 4237174 -  -4.9  -3.44146   GGTCGGCAGAATGAA        GGGTGC-CGA TTATAGCCG TCGAGCACCC        GCTCAGGCGAGGCGT  53 28
JJQ57_RS20050 4235666 .. 4235688 -    -9  -3.08471   TAGAACTCCAGTTAA           TCCGCCACCG CAA CGGTGTCGGG           CGAGGGTCGTCACGC  60 429
       rlmKL 4233104 .. 4233131 -   -22   -5.1861   CGCAGTACGAAAAAA        GGCCGCCAGCGG TTGC CCGCCGGCGGCC         TTTTGCATGAATACC 100 48
JJQ57_RS20030 4230962 .. 4230995 - -10.3  -4.22346   GAAAGGGAGGGAAAA     CGCGACCGCCATCC TCGGGCG GGATGGCGG-CGCT     ATCGCTTAGAGCTTC  81 31
JJQ57_RS20025 NONE
JJQ57_RS20020 4227518 .. 4227533 -  -7.5  -3.13403   CGCGCTGGAGCAATA              CGGCG GGCATA CGCCG               TCGTTCAAGAACCGG  54 204
JJQ57_RS19995 4223406 .. 4223427 - -15.9  -3.33696   CCGCGGCGGAACGAA           GAGGCCACC CTTG GGTGGCCTC            TTTCATGGCGGGATG  84 121
JJQ57_RS19970 NONE
JJQ57_RS19965 4218349 .. 4218395 -  -4.3  -3.96827   AAAACCATTGAGAAA CGC-CTATGCATCGCTTCGCCA GCAT CGCCGAAGCCAGGCACCGCGCG GCATGGGGGAAGGAA  61 115
JJQ57_RS19960 4216670 .. 4216686 - -10.8  -4.61231   CCATATCCCGAAAAA              CCCGCC TCAAC GGCGGG              TTTTTTATTGCCTGC  95 54
        moaB NONE
JJQ57_RS19935 4213634 .. 4213653 - -12.8  -3.50853   GCGGCGCAATGAGAA            CGGCGGCC ATCC GGCCACCG             TCGGCTCAGTCGAGC  76 31
JJQ57_RS19925 NONE
JJQ57_RS19920 NONE
JJQ57_RS19915 4207647 .. 4207657 -  -2.4  -3.05816   GTATCCGGGACGGAA                 GTGC GGC GCCC                 GGTTCAGGCAGGGTA  41 29
        yegS 4206580 .. 4206606 -  -5.9  -3.19789   AGACGGAACATGGAA         CCAGCATCCTT GGTGG AAAGATGCTGT         TATACGGTGTCGCGG  51 97
JJQ57_RS19905 4205540 .. 4205557 -  -3.3  -3.88559   AACGACGGCCAGAAA             GCCCTGC TGAA GAAGAGC              CAGATCGCCTGGATC  56 237
JJQ57_RS19890 4201165 .. 4201186 -  -5.9  -2.65264   GGATCATCGAGATGA           GCCGCTATCA CAT TGAT-GCAGC           TCACTTTTTTCGAGA  46 45
JJQ57_RS19885 4200188 .. 4200206 -  -6.6  -3.75437   AACCACGCCAGGAAA             TCCACCGC CTC GCCGCGGA             GCAGGCCTGCGACCT  59 188
JJQ57_RS19875 4198874 .. 4198892 -  -6.6  -4.19238   CCTGCAACGGGAAAA             CGCCGCCA CGG TGCCGACG             CTCACCGAGCAGAGC  70 393
        fadB NONE
        fadA 4194599 .. 4194629 - -16.9  -4.71061   ACTGACACTGAAAAA       CGAAAGCCGGGGC ACGAG GCCCCGGCTTTCC       CCTTCGACGAACGCT 100 40
JJQ57_RS19855 NONE
        topA 4191459 .. 4191483 - -11.4  -3.40403   CTTCGCGCAGTATAA          GCGCGCCC CATGCAAGC GGGCGCGC          CATCCATCAGCGCTT  71 32
JJQ57_RS19845 4190811 .. 4190849 -  -6.9  -3.51232   TTGCTGGCAAATCAA  CCGAGTGGAACGGTAGGAA AAT TTCCTACCGCTG-A-TCGG  CGAATGACGACGGCG  57 41
JJQ57_RS19840 4190248 .. 4190297 -  -6.1  -3.51825   GCAGGCGAAGGACAA CGCCGCTGCCCTGGCGCTCAG TTGCGAGG CCTTGCGCCTGGGCCGCAGCC ACACCGTGGTCAGTT  56 154
        psrA 4188335 .. 4188352 - -14.1  -4.64383   AAGGAGAAAGGAAAA             CGGCGCC CTAG GGCGCCG              TCTGCAATCAGGCCT 100 33
        nagZ NONE
JJQ57_RS19815 4186372 .. 4186387 - -11.8  -4.74706   CGCAATAGCGAAAAA              GGCCGC AATA GCGGCC               TTTTTTTTCGTTGCG 100 49
JJQ57_RS19800 4180631 .. 4180650 - -11.4  -5.07011   CACAGAAATGAAAAA            CGGGAGCC CGAG AGCTCCCG             TTTTCCTCTACGCCT 100 47
JJQ57_RS19795 4179124 .. 4179141 - -12.7  -4.98531   GTGCGAAATGAAAAA             CGGGAGC CGAA GCTCCCG              TCCCGCGCCACCCGC 100 45
JJQ57_RS19790 4177561 .. 4177571 -  -2.4  -2.66272   GGTTACGCAAACCCA                 TGGC TCA GCCC                 TCCTGCTCGATGCGT  38 19
JJQ57_RS19785 NONE
JJQ57_RS19780 NONE
        nqrD NONE
        nqrE NONE
        nqrF NONE
JJQ57_RS19760 NONE
        nqrM 4171684 .. 4171707 - -13.2  -3.53012   GGCGCCTCCGGCAAA          GCCGCTGCACA ACA TGTGC-GCGGC          GGATCGATTCGATCA  76 132
        sthA 4169804 .. 4169827 - -15.2  -3.15621   AACTGGAAGTGAAGA          GCGCCTCGCG CGAA CGCGCGGCGC           GGACGGTAACGCGGA  76 439
JJQ57_RS19730 NONE
        lolD NONE
JJQ57_RS19720 4165150 .. 4165166 - -13.7   -4.8048   GCCGGACATGAAAAA              GCCGCCT CGA AGGCGGC              TTTTTCGTGGGCCTT 100 78
JJQ57_RS19710 NONE
JJQ57_RS19705 NONE
JJQ57_RS19700 4161100 .. 4161110 -  -2.4  -2.71763   CGGAGAACGACATCA                 GGGC TTG GCCG                 CCGTGTTCTCGACCG  39 12
JJQ57_RS19695 4160082 .. 4160096 - -12.8  -2.68942   AGTCCTTCATACAAT               GGCGGC ACG GCCGCC               GGTCAGCGCGCCAGG  68 28
JJQ57_RS19690 NONE
        kdsB NONE
JJQ57_RS19680 NONE
        murB 4157590 .. 4157608 - -14.6  -4.93968   ACGCACAATGAAAAA             GGGATGCC GCC GGCATCCC             TTTTTCATTCTCCAG 100 49
        rluC NONE
JJQ57_RS19660 NONE
        sppA 4151062 .. 4151085 - -18.2  -4.04206   GCATTCCCATATAAA          GAAGCCCGGC TTCA GCCGGGCTTC           TTTATATAAGGAAGG 100 50
JJQ57_RS19645 NONE
        rpmF NONE
        plsX 4148527 .. 4148548 - -10.1  -3.48276   GCTCGTCGGAGATAA           CGCGCCAGC CGCG ACTGGCGCA            GGAAACTGAGTGTTG  68 70
        fabD NONE
        fabG 4146612 .. 4146631 -  -4.2  -3.10775   ACTCCTATGGAAAAT            CCGAGCAGC TGG GCTGCG-GG            TAAGTGTATAGAAAG  45 175
        acpP 4146288 .. 4146324 - -18.2   -3.5774   AGGTAAGGCGCTAAA   GAAAAGCCGCAC-GCCC TTAC AGGCTGTGCGGCTTTTC    CACGTCGGAAAATCC 100 50
        fabF NONE
        pabC NONE
        mltG NONE
JJQ57_RS19600 NONE
JJQ57_RS19595 4141458 .. 4141474 -  -2.1  -2.75074   GCCAGTCGAATATCA              GCGGGAT TCT AGCCCGG              CCCGGGCAGGCTTGC  39 17
JJQ57_RS19590 NONE
JJQ57_RS19585 4140148 .. 4140180 -  -2.6  -3.77831   TGACCAATACTGAAA     GGTAC-TGGCGCGCG GTAT CTCCCCCCAAGTACC      CAGCCAGTGAAGGTA  52 130
JJQ57_RS19575 4138162 .. 4138193 - -16.6  -3.34398   CCCTGCCGGCAAAGA      GTGCGCGGGGCGCAG TGA CTGCGTCCCG-GCAC      CACAGGCATCAGGCG  88 34
JJQ57_RS19570 4137122 .. 4137138 -  -2.2  -3.04398   CCGGCGTCGGAAAAC              CGGC GAATGACGA GCCG              ATGCAGCTTCCGCGC  41 43
JJQ57_RS19565 NONE
JJQ57_RS19560 4135861 .. 4135876 - -10.4  -5.01042   AAGGCAAACGAAAAA              GGCTCC CTCG GGAGCC               TTTTTTTCATGCTGC 100 46
JJQ57_RS19550 NONE
JJQ57_RS19545 4132153 .. 4132170 - -12.7  -5.71712   CCGGACATAAAAAAA             CCCGCTC CGGG GAGCGGG              TCTTGTCGGCTTGGA 100 48
JJQ57_RS19540 4130743 .. 4130772 - -19.3  -4.07568   GCCGGTCGCTGAAAA       CGCGAACCGGCGC CTGG GCGCCGGTTCGGG        GGAGCGGGAGCCGTC 100 65
        cobW 4125789 .. 4125823 -   -20  -3.69395   GGTAGGACGCAAGAA     GCTGGGGCCGGCGA ATCGCCA TCGCCGGCCCCGGC     CGGGGATCACGGATC 100 39
        cobN 4121500 .. 4121525 -  -8.9  -3.61398   GGTGGGCTTCAAGAA         CGGCACCGACG GCGG CGTCGGCATCG          CCTGCGACGCGATCC  62 515
JJQ57_RS19495 NONE
JJQ57_RS19490 4118533 .. 4118543 -  -5.4  -2.84634   GGCGACATGAGGATA                 TCTC CGT GAGA                 TGGATTGGCTGGATC  46 129
JJQ57_RS19485 4117119 .. 4117132 -  -8.1  -3.40163   CATCACCAACATCAA               CCAGG ACGC CCTGG                AGATCCACAGCGACG  59 279
JJQ57_RS19475 4113691 .. 4113711 -   -14  -4.49389   AGCGCACAACGAAAA            CGGCCCTC GCAAG GAGGGCCG            TCGTTCATCGCGGCG 100 45
JJQ57_RS19445 4107745 .. 4107774 -  -3.4  -3.04322   CGCAAGCCTGGAACA       CCTGGACCCGTC TCGCCG GACAGGCGCCGG        CGACGACCGAAGGGC  42 281
JJQ57_RS19435 4106384 .. 4106397 -  -3.7  -3.53012   CGGCCTCGCTTCAAA               GGCGG CAAG CGGCC                ATCAGTGATCCATGC  51 41
JJQ57_RS19420 4102781 .. 4102801 - -10.4  -3.13403   CGGCGGCCAGCAACA           GCGCGTGGC GATC GCC-CGCGC            CCTGGCCATGGAGCC  62 312
JJQ57_RS19390 NONE
JJQ57_RS19385 4095687 .. 4095726 - -12.8  -2.58272   TACACCACCAAGTGA  CCCAGCGTCCCGGTCGCCG CCA CGGCGACCGGCAC-CTGTC  CGGGAAAGACCCCAT  67 308
JJQ57_RS19370 NONE
JJQ57_RS19365 4093212 .. 4093243 -  -7.9  -2.56596   TTTGTCAGGAAGCTA      CCGGACCGCCTCAG AGCAG CAG-GGCGGCCCAG      GCCGAGGCCAGCAGC  51 4
JJQ57_RS19360 4092244 .. 4092257 -  -6.7  -3.27951   CAGCTGATCAGAACA               GATCC AGCG GGATC                TTCAGGTAACGCACC  55 4
        mntP 4085844 .. 4085860 - -10.1  -2.66249   GGTGAGCAAGAACAG              CGGTAGC CAG GCCACCG              AGCCGAAGCTCCAGG  57 216
        cobG NONE
JJQ57_RS19310 NONE
JJQ57_RS19305 NONE
        cobJ NONE
JJQ57_RS19295 NONE
JJQ57_RS19290 NONE
JJQ57_RS19285 4075961 .. 4075987 - -15.9  -5.21709   CGCCAGACGAAAAAA        GCCCCGG-ACCC TTTG GGGTACCGGGGC         TTCCTGCGGCGGCAC 100 46
JJQ57_RS19280 NONE
JJQ57_RS19275 4074643 .. 4074666 - -13.8  -5.35224   GCGAGAAAAAGAAAA          CCCGGTCGGT CGCC ACCGGCCGGG           TGCGGGCGGGAAATA 100 80
JJQ57_RS19270 4072825 .. 4072858 - -14.5  -3.72576   GGCGTCGCCACGAAA     CGCCCGGGCCGTCGCC AGA AGCG-CGGCCGGAGCG     GCTATCGGTAGACAT  88 227
        sbrI NONE
        sbrR 4071337 .. 4071392 -  -8.8  -3.36878   GTCATGCACGGATAA CCGC-TTGATGTCAGCCCGCGACGCCA TCA TGGCGTCGCGGGCCATGGTCGTCACGG CCGTTTCTTGGCGCT  60 20
JJQ57_RS19255 4070239 .. 4070249 -  -8.2  -4.11692   CACCGAGGTGGAAAA                 CGCC CTC GGCG                 CCTTCGACGGGGTCG  72 395
        atuR 4058020 .. 4058034 -  -2.8  -3.23216   GTCGATCATGACCAA               TGCC GCGAGCT GGCA               GCCGAAGTGGCCGGA  46 360
JJQ57_RS19195 NONE
JJQ57_RS19190 4054720 .. 4054766 - -11.5  -3.26319   AAGCCGCCAGACCAA GGCCGCCGG-TTGCGACGCCGGC TAG GCCGGCGTT-CAGGCCGTCAGCC GCTCGCGCAGGCGGC  69 12
JJQ57_RS19180 4052800 .. 4052817 -  -9.1  -3.14132   CTGGTTCGCCAGGAA             CGCCGAT TTCG ACCGGCG              CTTCCGCGAGCGCTT  59 500
JJQ57_RS19170 4051617 .. 4051644 -  -3.4  -4.27316   GCGGCGAATCGAAAA        CGGCGCGCATTGT CGC AGAATCCG-GCCG        TTTGCCGTAGCCCGG  64 69
        pyrF 4050662 .. 4050695 -  -3.7  -3.63744   TTTCCGGGGAAAACA     GCGAT-CCTACTGGCC TGG GGCCAGCCGGCAAGGC     ACTTGCAATTTTTCC  53 223
JJQ57_RS19160 4049722 .. 4049738 -  -2.2  -2.79183   CGCAGGCGCATCAGA              GCGC CGGGACTTC GCGC              AGCAGCCATTGCACC  39 4
JJQ57_RS19155 NONE
JJQ57_RS19150 NONE
JJQ57_RS19145 4045972 .. 4045989 -  -4.8  -4.57073   GATCCTTGGGAAAAA             GCCGAT CGGAAT ACCGGC              GGCGTCAGTGCCCGG  74 30
JJQ57_RS19140 4045028 .. 4045064 - -14.3  -3.58343   GGGACGACCTGGAAA    GCCTGCTGGTGCGCGCC GAC AGCGCGCTCTACCAGGC    CAAGAGCGGCGGGCG  78 77
JJQ57_RS19110 4038320 .. 4038360 -    -7  -3.70446   CTATAGGCAAGATAA  TTCGATATTAAAACCGCA AAAAA CGCGTTATCAATATCGAA  TTTATAGATTATTTT  62 34
JJQ57_RS19105 4037790 .. 4037815 - -16.1   -4.8622   CGCCGCAACGAAAAA         GGGCGGCCACC CGAA GGTGTCCGCCC          TTTTTCGTCGCCAGC 100 46
JJQ57_RS19085 4034219 .. 4034240 -  -4.3  -3.36452   ACCCTGGAAGACGAA           GACGGCGAG CAGG CCCGCTATC            GCATCGTCGGCCCCG  51 208
JJQ57_RS19065 4030060 .. 4030070 -  -2.4  -2.92667   GGAAGTCTCAAAGCA                 GCGG TTT CAGC                 GTCGGCCAGACATTT  40 7
JJQ57_RS19060 4029681 .. 4029699 -    -3  -3.82031   TGAAGGAGTAGGAAA             GACAGTGT AAC ACCCCGCC             AGGTTTCACCGGGAG  54 44
JJQ57_RS19055 4028623 .. 4028647 - -13.6  -5.14563   CCGGGCATGAAAAAA         CCCGCGT-CCC TTGC GGGTACGCGGG          CCTCTGCCTCGACGC 100 47
        earP 4026493 .. 4026509 -  -2.1  -3.51847   AAAGACAAAAAATCA              GGCCGCG TAT CATAGCC              AATCTGCGTAAAATT  47 18
         efp 4025847 .. 4025879 - -17.2  -3.63627   GGCGGACAGCGGAAA     CGA-AAAAGCCCGGC GAAT GCCGGGCTTTTCTCG      TCGCGCGAAAGGATC 100 39
JJQ57_RS19015 4022849 .. 4022869 - -12.6  -2.61264   CCGGTCACCGAGAAG            CTCGCCGA ATACA TCGGCGAG            GGCTTCCGTCTCTGA  67 42
JJQ57_RS19005 4021641 .. 4021651 -  -5.4  -2.78547   CCAGTCGATGAAGGA                 GACT GCG AGTC                 TATCGTGCCCCCGCC  44 74
JJQ57_RS19000 4019996 .. 4020006 -  -6.8  -3.28924   GATGGGTGCCGACAA                 GGTC GGC GACC                 ACCTGCCGCGCCTGA  54 428
JJQ57_RS18990 4017581 .. 4017623 -  -7.7  -3.33696   CCGGCGTCCAAGCAA GCCGCTGGTGGTGGCCGT-GC AAG GCTACTGCTA-CACCATCGGC ATCGAACTGATGCTG  56 499
JJQ57_RS18980 4015226 .. 4015243 - -14.1  -4.74801   CAAGCCCATGAAAAA             GCCCCGC CGAA GCGGGGC              TTTTGTTCATCGCGC 100 47
JJQ57_RS18945 4007223 .. 4007233 -  -2.4   -3.3422   CATTCGTGGAAAAAC                 CCGC AAG GTGG                 CGATAATCGGCTGGC  45 44
JJQ57_RS18940 4006516 .. 4006537 - -18.7  -2.74605   TCCGCTGAAAATGGA           CGGGGCGCC GCGC GGCGCCCCG            TTTCAGCCTCTCTCC  87 28
        msrB 4001904 .. 4001926 -  -7.7  -4.88407   TGATTGAATGAAAAA           CGACCCG AACCAAAGA CGGGTCG           TCGCTCTCTAGCTCT  88 33
JJQ57_RS18910 NONE
        ospR 4000643 .. 4000685 -  -8.3  -2.56715   ACGGCTACGAAGCGA CCCGGCAGATCCGCGACAGC GGAC GCTGGGGCGG-CCTGCCGAT CATCGCGCTGACCGC  52 189
JJQ57_RS18895 NONE
JJQ57_RS18890 3996786 .. 3996797 -  -2.2  -4.12188   CGATTACCTGGAAAA                CCAT CTCG ACGG                 CCGGGCCTTCTTCGT  58 246
JJQ57_RS18875 NONE
JJQ57_RS18870 3995078 .. 3995091 -  -8.1  -5.26875   GCTGGAATGAAAAAA               GGAGC CGAA GCTCC                TTTTTTCAATGACCT 100 74
JJQ57_RS18865 3992937 .. 3992952 - -11.8  -2.55074   TGCAAGCGTAATGCA              GGGGCC ACAA GGCCCC               TGCAAGGTTTGAGAG  65 43
JJQ57_RS18850 3990603 .. 3990656 -  -2.5  -3.15861   CATGACGGCGACCAA GATTCCCATCTCTCAACGGCCGGAT GTGGTG ATCCGCCCCTTG-GCGATGG-ATTC TGCCGTGATCACGAC  42 148
JJQ57_RS18830 3985788 .. 3985798 -  -8.2  -2.93348   GCCATCAAGACGAGA                 CGCC GGA GGCG                 TGGAGCTACGTCACC  55 43
        uvrB 3983335 .. 3983366 -  -4.3  -3.76775   CGCAAGACACTGAAA      GGCACA-CGCCCTG GAAAG CGGGGCACTGAGCC      TTGGCGGCTCGCCCC  56 124
JJQ57_RS18815 NONE
JJQ57_RS18810 NONE
JJQ57_RS18805 3980148 .. 3980167 -  -2.8  -4.37658   AACTTCGCCACAAAA            TCTGTGCTC TTC GAGCAC-GC            TTACAGGCTAGTACA  64 208
        frmR 3979762 .. 3979782 -  -5.3  -3.94002   TACTAGCTAACTAAA            TTTGCCCTC ACC GAGGGCACC            CTGGTGCCTCTACCT  60 35
JJQ57_RS18795 NONE
JJQ57_RS18790 3978044 .. 3978080 - -20.2  -4.06055   ACGCTTCAAAGCAAA    TGCCCGCAGCCATGCG TTTCG CACATGGCTGCGGGCC    GATCTTCATGAGCAG 100 126
JJQ57_RS18785 3976630 .. 3976650 -  -6.8  -3.52204   CTATGTTCAAAGGAA           CGGCGCAGC TCTC GC-GCGCCA            AGACGGCAGCTCGTC  57 39
        fghA NONE
JJQ57_RS18775 NONE
JJQ57_RS18770 NONE
        nhaA NONE
JJQ57_RS18760 3968076 .. 3968092 -  -4.4  -3.21218   ACGGCTCATCATCAA             CGA-CGC GAAG GCGCTCG              TGCATACGGTGAATG  47 414
JJQ57_RS18750 NONE
JJQ57_RS18745 NONE
JJQ57_RS18740 3964467 .. 3964496 -  -7.8  -2.71011   AGTGCCGGCCAAGCA       GGCGGTAAGGGC GCTGGG GCCCTTACCGGA        GGTAAGCTGAAGTAG  52 52
JJQ57_RS18510 NONE
JJQ57_RS18505 3923934 .. 3923966 -  -2.5  -4.37886   CGATCTTGGACAAAA      TTGCGGACCGCGC TCAGCCC GCCCTGCCCGCCA      GCGGCACCACCGCCA  62 6
JJQ57_RS18500 NONE
JJQ57_RS18495 NONE
JJQ57_RS18490 NONE
JJQ57_RS18485 3920594 .. 3920609 -  -4.6  -3.95817   GAATAGTCAAGGAAA              CAACGG CAAG CCGGTG               TTTCAGCGCGCGAAG  60 28
JJQ57_RS18480 NONE
JJQ57_RS18475 3919014 .. 3919057 -  -8.6  -2.52464   GCCTTGCCGAAGGCA TTTTCACCATCGCCCGGGCC CGCA GGCCCGGGCGAACGCGTTCA ACGCAGCCAGTTGAG  53 23
JJQ57_RS18470 3917788 .. 3917804 - -15.1  -4.70659   CCGCAGACGCAAAAA              GCCCCGC ATC GCGGGGC              TTTTTCTCCTTCGTC 100 43
JJQ57_RS18445 3912228 .. 3912239 -  -7.2  -3.05963   ATGCTCACTCCAATA                GGCC CTTA GGCC                 GGTTGCCATGATTCC  54 55
JJQ57_RS18440 3911013 .. 3911038 - -13.2  -3.25823   CGCCTGGGAGAGCAA         CCGGCCGGGG ACTGCG CCACGGCCGG          TGACAAGGCGAAGGA  74 47
JJQ57_RS18435 NONE
        kdpA 3909085 .. 3909095 -  -3.2  -2.57564   CGATTCCTTCAGAAG                 CCGA GGC TCAG                 TTGTTCAGCGATCGG  39 8
        kdpB NONE
        kdpC NONE
JJQ57_RS18415 3903548 .. 3903575 -  -7.6  -3.06162   CACGGCAGGTGAACA        CGGCGACG-AGCC AGC GGCGGCGTCGCGG        AAACGGCAGGAATAG  54 74
JJQ57_RS18410 3902791 .. 3902814 - -11.6  -2.50443   TCATAGGCGATGAAC          GCGCGGGAGG CATG CCCCTCGCGC           AGAATTGCGCTGCGC  65 42
        glsB 3901756 .. 3901788 -  -9.1  -2.50252   AGCCGCAGAACATAG     CGCAGCGGCGC-CG GGAATT CGAGCGCCACCACG      ACGGGCGGCGGTTTC  56 39
JJQ57_RS18400 3900713 .. 3900750 - -11.1  -2.56271   CGGCGACGACAATAC   CCCGCCGGAGCTGAGCG CCGA CGCCCTGCTCCATCCGG    TTCCGGCGGAATCCG  59 361
JJQ57_RS18390 3899613 .. 3899627 -    -7  -3.74693   GCCCATTCTAGCAAA               GCCGGC GCC GCCGCC               AGAGGGCCGATCACC  62 50
        selD NONE
        mnmH 3897133 .. 3897154 - -10.1  -2.71731   GCCACTGCGGAACCA           TCGCCTACG AAGT CGAAGGCGA            CCTCGACCAGGTGAT  57 296
JJQ57_RS18370 3896278 .. 3896298 - -13.9  -3.15544   CGCCAGTGGCAGGAA            CGCCAGGCC GCG GGCCAGGCG            CCGGTGTGCCGGCGC  73 80
JJQ57_RS18360 3893760 .. 3893778 -  -2.3  -3.48024   CGCCAGCAGGAAAGA            CTCGCCGC CCAG GCCGCG-G             CTACAAGCGGAAATG  47 26
JJQ57_RS18345 3889852 .. 3889880 -  -9.5  -3.66784   CGACCTGTAACAGAA        TGCGAATGCCCCG CGC CGGGGCATCCCGA        TTGTATCGCCGCCCG  68 42
JJQ57_RS18340 3888358 .. 3888374 -  -9.3  -2.52623   GGCGTCGCAGAACAT              GCCCGGC ATC GCCGTGC              TGCGCGCCGACGGCT  54 496
JJQ57_RS18330 3886576 .. 3886618 -  -6.2  -4.07568   CGTGCGGTTGGAAAA GGCGCTGCGTCGCGAGCAG TCGCGG CTGCTC-CAACGCTGCTTC GAGGAAGCCGGCGGC  66 183
JJQ57_RS18320 3884968 .. 3884997 -  -4.9  -3.05384   GCTCCTCGGATCGAA       TGGCCGGCGC-CCT CGG AGGAGCGCCGATGA       GGGTTCAGGCCGCTT  47 30
JJQ57_RS18315 3884105 .. 3884120 -  -6.1  -4.89838   CGAATAAACAGAAAA              GCTGG AGGATG CCAGC               GAACCAGGATCGCTC  82 249
        tssA 3872941 .. 3872953 -  -6.2  -2.59431   CTCCTTGAGAATTGA                GGGC GCGAA GCCC                TATTCGAGCACCACC  46 25
        tssB NONE
        tssC NONE
        tssE 3870329 .. 3870360 - -12.2   -3.0894   GAACCAGGCATCGAA      GCGCGCCAGGCCGA GGCG TCACCCTGGCGGGC       CGCCGCGAGGCCGTC  68 153
        tssF NONE
        tssG NONE
        tssH NONE
JJQ57_RS18245 3863166 .. 3863186 -  -8.1  -3.05816   GGAGTCTCCATGGAA            GGGCCGCGG ACG CCGCGCTCC            AGGCGCGCGCCCGAC  57 75
JJQ57_RS18240 NONE
        tagH NONE
        tssJ NONE
        tssK NONE
        icmH NONE
        tssM 3855546 .. 3855556 -  -2.4  -2.78384   GTGCGTTGCATCAGA                 GCTG CAC CGGC                 ATGCGGAAGCTGCGC  39 10
JJQ57_RS18210 NONE
JJQ57_RS18205 3853560 .. 3853609 - -10.6  -3.14132   TTCCCCTTCGAGGAA GGC-CGT-GACGGTGCCAGCGGCG CACT CGCCGAGGGCGACGTCTACGTGCC TACGCTACATGGGGC  64 243
JJQ57_RS18195 3852671 .. 3852688 - -14.1  -3.90744   CCGCTGGCGAAAGAA             CCGGCCC CACT GGGCCGG              TTTTGCGTTTCCTTC  86 49
        prmB 3848870 .. 3848885 -  -6.8  -3.05596   GATGGCCTGACCGAA              GACGCA CGCC TGCGCC               GCGACCATTTCATCC  51 376
        aroC NONE
JJQ57_RS18150 NONE
JJQ57_RS18145 NONE
JJQ57_RS18140 3843768 .. 3843790 - -18.4   -2.8372   GACTCCGGATGAAAC           CGCCCCCGGC AGG ACCGGGGGCG           CGGATGGTGACGGAT  90 56
JJQ57_RS18130 3842506 .. 3842528 -    -9  -2.88579   GCAAGCGGGTACAGA           CGCTGCAACG CTT CGCCGCGGCG           ATCGCCTCGGGAGAG  56 329
        speE 3840886 .. 3840899 -  -9.5   -4.7497   GCGACGCATGAAAAA               GGGCC TTGC GGCCC                TTCCCGGTGAAGCGT  93 40
JJQ57_RS18115 NONE
JJQ57_RS18110 3837743 .. 3837758 - -11.8  -5.40072   TGGCGCCGAAAAAAA              GGGGCC CGAA GGCCCC               TTTCTCATGCTTGCT 100 46
        popN NONE
        pcr1 NONE
        sycN NONE
        pscX NONE
        pscY NONE
        pcrD 3826615 .. 3826643 -  -3.2   -2.7795   GAAACCAGGGAATCA       GC-GGATCGGCGCT CAC AACAC-GATCCTGC       CAAGCGGCTGGATGT  40 9
        pcrR NONE
        pcrG NONE
        pcrV NONE
        pcrH NONE
        popB NONE
        popD 3822371 .. 3822386 -    -9   -5.4505   TCTTTTAAGAAAAAA              GCCACA TCGC TGTGGC               CTTTTCCTCCCGCGC 100 50
        exsC NONE
        exsE 3821585 .. 3821607 -  -4.8  -2.74523   CCAGCGGCAACAGCA           TCCAGCAC CTCACCT GCGCCGGA           CCGTGCGCGCCTCCA  44 12
        exsB 3820997 .. 3821051 -  -4.8  -2.98813   ATTTTATAATAATCA GGATTATCCGACGTGCGCTGATTCGC AGA GCGAGTCGGCTTCCGCCAATTAATCC AGCCTTCTTTAGAAG  47 146
        exsA 3819966 .. 3819989 -  -5.2  -2.78384   GGCTTCCTCACTACA          TTGCGCGCTC GTCA GAGCCTGCAA           TTTGGGCCGATTCTA  44 74
        exsD NONE
        pscB NONE
        pscC NONE
        pscD NONE
        pscE NONE
        pscF NONE
        pscG NONE
        pscH NONE
        pscI NONE
        pscJ NONE
        pscK NONE
        pscL 3811987 .. 3811997 -  -8.2  -3.08679   GGCCCGGAGCCAACA                 CCCG GGC CGGG                 GGCGGCGCCTGGTTC  57 43
JJQ57_RS17915 3806646 .. 3806697 -  -8.4  -3.95584   CTTCGAGGAAGGAAA GCCCGACGCAGGAGCCCCGGCCCAG GAT CGCGGCCGGGG-TCCCGCCGCCGTC ACGGACGCAGCGAAG  71 24
JJQ57_RS17910 3805788 .. 3805823 -  -8.3  -3.18832   TAAGTCTAGAACAGA    CCCGGAAGGGAGACGG CTTCT CC-CCTCCCTTCCATG    CAGACAGCCGTCTCG  58 102
JJQ57_RS17905 NONE
JJQ57_RS17900 NONE
JJQ57_RS17895 NONE
JJQ57_RS17890 3801464 .. 3801480 -  -3.6  -4.16943   GGCCACAGGCGAAAA              TGCCGG CGTTC CCGGAA              CGGGTGATCGACGAC  65 117
JJQ57_RS17880 3799487 .. 3799514 - -11.3  -2.64274   AGCGTTCGAAAGGGA        GGTCGACGCCGG GGATG CCGG-GCCGACC        GAAGAGTACGCCACT  62 254
JJQ57_RS17875 NONE
JJQ57_RS17870 3795770 .. 3795787 - -14.1  -3.99324   CGCGACCACGAGAAA             GCCGGCC CGAA GGCCGGC              TCTCCATGCGACGTC  90 46
JJQ57_RS17860 NONE
JJQ57_RS17855 3792503 .. 3792515 - -10.5  -3.14564   TGAGCGGCCGATCAA                CGGCC CCC GGCCG                CGTCCAGGGGCAGCC  64 9
JJQ57_RS17845 3791103 .. 3791130 -   -17  -4.54727   GGCCTGAAACGAAAA        CGCCGCCAACCC CGGG AGGCTGGCGGCG         CTCGCATGGCGCGGG 100 47
JJQ57_RS17825 3789214 .. 3789231 - -14.1  -4.14392   CCGCAACCCTGAAAA             GCCCGGC TCAC GCCGGGC              TTTTCGTTCAGGCCA  93 33
JJQ57_RS17810 3787426 .. 3787457 -   -21  -3.57792   TGAGCGAGGTGGAAA      CGAAAACGCCGGGC TGAT GCCCGGCGTTTTCA       TTGCGCGCCTGCTCA 100 38
JJQ57_RS17800 NONE
JJQ57_RS17795 NONE
JJQ57_RS17790 3783920 .. 3783932 -  -3.3  -4.09243   GAGATTCCTCGAAAA                GGTTG TCG CGACC                GGCGATCAAGAACCG  58 128
        cysB 3782890 .. 3782908 - -13.1   -4.7497   GCCAGCCATGAAAAA             GCCCGGC ACCAG GCCGGGC             TTTTTCATGGGCCGA 100 46
        thrH 3780867 .. 3780887 - -18.3  -4.66537   CCCCGGAATAGAAAA            GAGCCCGCG TTC CGCGGGCTC            TTTCATCGGCGGCGC 100 43
JJQ57_RS17760 NONE
JJQ57_RS17755 NONE
JJQ57_RS17750 3773185 .. 3773210 - -16.9  -3.85698   CCTCTTTCGGAGAAA         GACCCCGCCGA TGCC TCGGCGAGGTC          TTCGCGTCTCGACTC 100 51
JJQ57_RS17745 NONE
JJQ57_RS17740 NONE
JJQ57_RS17735 NONE
JJQ57_RS17730 3768475 .. 3768492 - -14.1  -3.71848   TTCCGGTATGAAGAA             GCCCGGC TCCG GCCGGGC              TTTTTCATGTCTCGG  84 44
        ppsA 3761699 .. 3761716 -  -9.8  -4.75372   AGGAGGCACGAAAAA             GGGCGG TGTTAC CCGCCC              TTTCCGGATACAGCG 100 49
JJQ57_RS17700 NONE
        rraA 3760014 .. 3760043 - -17.2   -4.7373   TCATTCCAGCAAAAA       GCCCCGG-GACGC TGCCT GCGTCACCGGGGC       CGGAACGGCTGTTAA 100 47
JJQ57_RS17690 NONE
JJQ57_RS17685 NONE
JJQ57_RS17680 3757687 .. 3757711 -  -4.1  -2.66912   ATTCAAGTGAGATCA          GGCCAGTCATA TCG TAAGCCGGGCC          GCCCTGCAGAGCAGC  41 63
        sigX 3757033 .. 3757045 -  -3.4  -3.32268   CAATCAGCCGCACAA                CTTG GGTGG CAAG                TTTATCAGAACTTCC  46 67
        oprF 3755881 .. 3755908 - -18.6  -3.64703   CTTTTTCCAGGCAAA        GAAAAACCCGGC CTGA GCCGGGTTTTTC         CTTAGAGGCTCAGCC 100 43
JJQ57_RS17615 3739623 .. 3739638 - -11.8  -4.72272   TGGTCGGACGAAAAA              GCCGCC CAAG GGCGGC               TTTTTCGCTGGAAAC 100 46
JJQ57_RS17605 3737915 .. 3737930 - -11.8  -5.53991   CAGGCAGCAAAAAAA              GCGCCC CGCG GGGCGC               TTTCTTGTTTCCGGC 100 41
JJQ57_RS17585 NONE
JJQ57_RS17580 3731987 .. 3732004 - -14.1   -4.4078   CGCCGGTAATGAAAA             GCCCCGC GTTC GCGGGGC              TTTTCATTTATCGCT 100 47
JJQ57_RS17570 NONE
JJQ57_RS17565 3730601 .. 3730621 - -18.3  -4.54727   GCTTGGAAATGAAAA            CGCCAGGCC TCG GGCCTGGCG            CTTCGGAATATGGGG 100 36
JJQ57_RS17560 NONE
JJQ57_RS17555 3730320 .. 3730340 -   -14    -4.564   AAGCGCAAACGAAAA            CGCCAGGC ACAAG GCCTGGCG            CTTCGAAATATGGGG 100 36
JJQ57_RS17550 3729847 .. 3729878 -  -7.9  -3.01712   CCGTTCGCCGGAACA      CAGCCCAGGGCGC GACCTT GCGCCCGAAACTG       GCGAACCGGCCGGAT  54 88
         tig 3724129 .. 3724160 - -14.5  -3.38314   GTGAAGCCTCAAAGA      CGCACAAGCCAGC ACTAAG GCTGGCTTGTGGG       ATTCGAACGAGAGGA  82 46
        clpP 3723385 .. 3723408 -  -5.2  -3.24381   ACAAGATGAAGGCAA          TTGTGGGCAT TTTC AAGCCCACGA           GGCGGCCGAATGTCT  48 63
        clpX 3722038 .. 3722053 - -11.8  -5.08255   AGTCGGAAAAGAAAA              GGGGCC CGAA GGCCCC               TGCTCTTTCATGCCT 100 33
         lon NONE
        hupB 3719067 .. 3719077 -  -4.6  -2.76189   TAACCGACTGAACTA                 CCGC TCC GCAG                 CCAGGCCAGCCTTGG  44 73
JJQ57_RS17505 3718967 .. 3718986 - -13.6  -4.38927   TGCGGATATAAGAAA            GGCGCATC CGAG GATGCGCC             TTCTCGTAACTGGCG 100 36
JJQ57_RS17500 3716988 .. 3717013 - -17.7   -4.1552   CATGGGCGGAATAAA         GAAAAGGCCGC GTAA GCGGCCTTTTC          TCTGCATCTCGGTCT 100 40
JJQ57_RS17455 NONE
        rnhA NONE
        dnaQ 3703438 .. 3703464 -  -6.5  -4.63218   GCCCTTGTAAGAAAA        GGTCGCGGCAAC ACAA GTCGGCGCG-CC         GCGCTTGCCTCCGCT  78 508
        ldcA NONE
JJQ57_RS17430 3699250 .. 3699283 -  -5.9  -2.77999   CACCGACGAACACCA     GATCGGCCGCGCCTTC CAG GAAGCC-CTGCCGTTC     ACTGCGCTGCTGGTG  47 444
JJQ57_RS17420 NONE
        fimL NONE
        nudC 3694288 .. 3694301 -  -4.5  -3.05384   GCCGGTCGGACGCAA               GC-GCC AGT GGCCGC               AGGGCCTCGCCCTGG  45 340
JJQ57_RS17400 3692910 .. 3692931 -  -7.1  -2.65815   GGCAGATGCAGACCA           TCGCCGGGC TGGT GGCCGGCGG            CATCGGCGTCGCGCT  47 218
JJQ57_RS17390 3691191 .. 3691206 - -10.4  -3.04322   GCGAACGCGCGAAGA              GGGAGC CAGG GCTCCC               TCTTTTCATTTCAGG  62 148
        sohB 3686668 .. 3686681 -  -2.3  -4.07568   CTCCTCTCGTGAAAA               CCCTG AAGA CAGCG                TGTTCGTCCCTGTCG  57 49
JJQ57_RS17360 3685220 .. 3685232 -  -3.3  -4.42238   CTACTGGAAGGAAAA                CAGCC CGC GGTTG                CGCAACAAGGTCTGG  66 447
JJQ57_RS17345 3683511 .. 3683528 - -14.1  -4.18018   CGCCCTGACGGAAAA             GCCCCGC AGCC GCGGGGC              TTTTTCGTTCCCGAG  93 53
JJQ57_RS17320 NONE
JJQ57_RS17315 3678337 .. 3678361 -  -6.3  -4.24948   CGAGCAGATGGAAAA          GCCGCGCAAGC GCC GCCTGCGCAAG          AAACTGCGCCTGGGC  70 362
JJQ57_RS17290 3670605 .. 3670630 - -14.7  -2.58758   ATAATTCGCGATAAC         CGACCCACCCC TTGC GGAGCGGGTCG          CGACACTCAGAGGTT  74 32
        nfuA 3669890 .. 3669907 - -12.7   -4.8622   GCCGGCAACGAAAAA             GGCGACC TTGC GGTCGCC              TCTTCTGCCTTACGG 100 48
JJQ57_RS17265 3665944 .. 3665959 - -11.8  -3.81951   CTCCATACGACGAAA              GGCGCC CACG GGCGCC               TTTTTTCGTTTCCTC  78 40
JJQ57_RS17255 3664415 .. 3664463 -    -8  -3.33696   CCGGTGCTCAACGAA GC-CGGCTACCTGGTCGGCATCG TCAG CCAGACCGACCTGATCGCCGCGC TCTACCGCAACTGGC  56 63
JJQ57_RS17230 3658702 .. 3658715 -  -5.2  -3.41527   GAAGGCTGATCAGAA               GCGC CAGAAC GCGC                GGGTGCACAGCACCA  53 6
JJQ57_RS17215 3655549 .. 3655604 -    -6  -3.14344   CACTCGCCGGACGAA GTGGCGC-G-CCTGGCCGATCACCTG GTGCTG CTGGAGAACGGCAAGGTCCGCGCCAG CGGGCCGATCGGCGA  51 486
JJQ57_RS17190 NONE
JJQ57_RS17185 3648587 .. 3648600 -  -2.3  -3.54424   CCGGATCGGGGGAAA               TCGTG GGGA CGCGA                TTATACATGGCTGCC  49 79
JJQ57_RS17180 3648200 .. 3648229 -  -9.1  -3.54424   GCGGATTCCGGCAAA       CGGGCGCGCTGCA TCGA CGCGGCTCGCCCA        GGGGCGGCGAGCATA  68 151
JJQ57_RS17175 NONE
        gspD 3645273 .. 3645288 -    -9  -3.35679   CCCCGCCAGCGACAA              CTGCCA GATC TGGCAG               TGGCGCTGCGCCGGA  63 106
        acpP 3644819 .. 3644853 - -12.8  -5.75342   GGCGGGCAAAAAAAA     GCCGGATCGGCCCG GGGCGGG CTGGACGATCCGGC     GTAATCGAAGCGCGG 100 134
JJQ57_RS17160 3644006 .. 3644019 -  -5.9  -3.64236   AGGGAAACCTTGAAA               GCCAG CAGC CCGGC                GACATCGCCTCCGAC  57 260
        lasA 3642410 .. 3642457 -    -6  -4.12188   GCAGTATTCGGAAAA GCTCGCGGCGCAGATCGTGCCCA TCG TCGGCGCCCTCGGCGGCGCG-GC GATCAACACGGTGTT  66 282
JJQ57_RS17140 NONE
JJQ57_RS17135 NONE
JJQ57_RS17130 NONE
JJQ57_RS17125 3631368 .. 3631409 -  -7.2  -3.64703   GCCCTGGCAGTGAAA GCGCTGGACAAGCTGGAA ACCCTG CTCCAGCACACCCAGGGC  GACAATCCGGCGGAC  61 275
JJQ57_RS17100 NONE
        ndhC 3626157 .. 3626185 - -12.4  -3.03159   GGAAGTGTGGGAAGA       CCCGGCCAGCGGC TACC GCCGCCG-CCAGG        TCGGCGCTCGCGATC  67 285
JJQ57_RS17085 NONE
JJQ57_RS17080 3622612 .. 3622637 -  -9.7  -3.07994   CTGAAGGTCATGCAA         TCGGCGCCCAGC GCA GCCGA-CGCCGA         CGCCCGCCTCGAAGC  59 234
JJQ57_RS17065 NONE
        qscR 3609849 .. 3609880 -   -16  -2.73159   GCAACCGGCGCAAAC      GCTATCCGGCCATTC GGT GAATGGCCGGAC-GC      TTGCGTGGCGGCCTC  81 62
JJQ57_RS17015 NONE
        phzB NONE
        phzC NONE
        phzD NONE
JJQ57_RS16995 NONE
        phzF NONE
        phzG 3603144 .. 3603156 -  -6.9  -3.73224   TTATCCGCCATGAAA                CGCCG GCG CAGCG                GTGTCGTCACGGTTG  62 32
JJQ57_RS16890 3580661 .. 3580690 -    -2  -3.21276   GCGCGCCGCAGAAGA       GTAGCGAACGGC GCATCA GAAGCTCGCCAC        CAGGCCGAGATGGAA  43 11
        cobN NONE
JJQ57_RS16880 NONE
JJQ57_RS16875 3575976 .. 3575990 -  -4.2  -3.93009   CAAGAGAAACGGAAA               CCGG CCATTAT CCGG               GAACTCCGGGCAAAA  58 67
JJQ57_RS16870 NONE
        metE 3571200 .. 3571232 - -23.5  -3.58269   GAACCGACGTGCAAA      CGCGGAACGGGACGC CAG GCGTCCCGTTCCGCT      CACCAGGCCCGCCGG 100 41
JJQ57_RS16850 3568614 .. 3568631 -  -2.5  -3.89346   TGGCCATGCCACAAA             GGCGGGC GGAT GCTCGAC              GCCTGCGCCGCTATC  54 65
JJQ57_RS16845 NONE
JJQ57_RS16840 NONE
JJQ57_RS16835 3564466 .. 3564485 -  -4.2  -4.13767   GCTTCCAGGCGAAAA            CCGCT-CGC TAC GCGGAGCGC            CGGTCTTCGGCCCCA  63 342
JJQ57_RS16830 3563881 .. 3563902 -  -9.3  -3.59979   TCCTCGCACCCGAAA           GCCGCCGAG GCTG CCCTGCGGC            TTTCGCTGCGCAACG  68 50
JJQ57_RS16810 3557275 .. 3557285 -  -8.2  -3.22653   ACGAGTCGTAGAACA                 GGCC TCA GGCC                 TTCATCGCTGCCATC  58 19
JJQ57_RS16790 3550370 .. 3550382 -  -3.3   -4.8543   GAACCGTCATAAAAA                CGGCA TGT TGGCG                CTCTGAAAGGAAAAT  75 105
JJQ57_RS16785 3548864 .. 3548895 -  -2.5  -3.05844   TGCGTTAGGTGAATA     TGCGTCGATCTGACAG ATT CTGTCA-ATCG-C-CA     TGAGCAACTGTCGCG  41 128
JJQ57_RS16780 NONE
JJQ57_RS16775 NONE
JJQ57_RS16770 NONE
JJQ57_RS16765 NONE
        rbsK 3543205 .. 3543215 -  -8.2  -3.30124   GCGCAGGGCGGATAA                 CGCC GCA GGCG                 TTATCCGCCGGTAGC  60 57
JJQ57_RS16715 3535686 .. 3535703 - -14.1  -5.44119   GCCAGGCGAAAAAAA             GCGCGGC TCGC GCCGCGC              CTTTTACCTGGTTCC 100 47
JJQ57_RS16710 3534684 .. 3534707 -  -9.4  -4.15044   GTCCTGCGCAAGAAA          GCCGCCGTGG CCGG CCTCGGCGTC           ACCCTGCTGCCCGAA  75 255
       azoR2 3533192 .. 3533222 - -16.3  -3.28712   CGCCGCTGCGCACAA      CGCGAAAACCCCGC CGAA GCGGGGTTTTC-CG       ATGACGCGGGGATCA  88 38
JJQ57_RS16695 3532799 .. 3532816 - -14.1  -4.27316   TCGCGCAACGCAAAA             GCCCCGC ATCC GCGGGGC              TTTTTCATTCCGGCA 100 71
JJQ57_RS16595 3518188 .. 3518202 -  -4.2  -4.44448   ATGATCGGAAAGAAA               GGCC CTTTATC GGCC               CTGAGTTTACGGTCT  70 260
JJQ57_RS16540 3510960 .. 3511001 - -14.3  -4.46656   GGCACAACACCAAAA GGACCAGGCCGCGCCGGAA CCTT CCCCGGCGCGGCCTTTTCG  TTCCTGCCCTTCACT 100 153
JJQ57_RS16520 NONE
JJQ57_RS16515 NONE
JJQ57_RS16510 NONE
JJQ57_RS16505 3506617 .. 3506639 -  -5.6  -3.92869   CCACGCACCGACAAA          GCCCTGTAG TAGTCG CT-CAGGGC           TTTGTTGTATCTGCG  62 130
JJQ57_RS16500 NONE
        dnaB NONE
JJQ57_RS16490 3503496 .. 3503519 -  -8.2  -2.86271   CCTCCATCAGAATCA          TCGTGAAGCGC TTG GCGCCT-ACGA          CTACGGTCCAGGAGC  55 44
JJQ57_RS16485 NONE
JJQ57_RS16480 NONE
JJQ57_RS16475 NONE
JJQ57_RS16470 NONE
JJQ57_RS16465 3500564 .. 3500584 -  -3.8  -3.02829   TAGAGCCGCGGAATA            GGTGCCGG ACTAG CCGGCGTC            ACGCCCGCAGAGCAA  45 476
JJQ57_RS16460 NONE
JJQ57_RS16455 NONE
JJQ57_RS16450 3500286 .. 3500305 - -10.7  -3.95073   CTCCAGATGCAGAAA            GCCCAGG TCATTG CCTGGGC             CTTGTAGTGTGGTGC  79 35
JJQ57_RS16445 NONE
JJQ57_RS16440 3499624 .. 3499638 -  -5.6  -2.83164   GCATCCATCAGCACA               CCCTCA GAA TGTGGG               CCAGGTTCCCCCGCG  48 3
JJQ57_RS16435 3498895 .. 3498909 -  -7.1   -3.2614   TACGTGGTAGATCAA               CTCCC GGCCA GGGAG               CGGGCTTTCGGGGCG  55 145
JJQ57_RS16430 3498097 .. 3498111 -  -7.2  -3.87815   CCCCACCCCTATAAA               TGAGAA TTT TTCTCA               TTTAGCTCGATTTTT  68 128
JJQ57_RS16425 NONE
JJQ57_RS16420 NONE
JJQ57_RS16415 NONE
JJQ57_RS16410 NONE
JJQ57_RS16405 NONE
JJQ57_RS16400 3492364 .. 3492387 - -13.8  -4.44046   GTCACCTCAAAGAAA          GAGGGGCCGG GAGA CCGGCCCCTT           CCAGTCAGCTGGCGG 100 30
JJQ57_RS16395 NONE
JJQ57_RS16390 NONE
JJQ57_RS16385 NONE
JJQ57_RS16380 3490087 .. 3490119 - -10.7  -3.90328   CATAATCTCCAGAAA     CGA-CGAA-GCCCGC ACTTG GCGGGCTTTCGTTCG     TCGGGTTTGGCTAGG  79 36
JJQ57_RS16375 NONE
JJQ57_RS16370 NONE
JJQ57_RS16365 NONE
JJQ57_RS16360 NONE
JJQ57_RS16355 3487447 .. 3487462 -  -7.5  -5.20534   AGCAAGCAATAAAAA              CCCGC GCGGTG GCGGG               CTGATCGGTTTAGGT  93 43
JJQ57_RS16350 NONE
JJQ57_RS16345 NONE
JJQ57_RS16340 3486239 .. 3486256 -  -9.1  -3.29471   GCGCCAGCACAGGAA             CCCGGCA TCCT TGCCAGG              TCAAACCCATGCGGC  63 26
JJQ57_RS16335 NONE
JJQ57_RS16330 3481110 .. 3481120 -  -6.8  -3.73402   ACAGCGTGGATGAAA                 TGCC AGT GGCA                 ACCGCCCTACCGGGG  62 508
JJQ57_RS16325 NONE
JJQ57_RS16320 NONE
JJQ57_RS16315 3478952 .. 3478967 - -11.8  -4.63048   TCCAGAAACAAGAAA              CCCCGC CGAG GCGGGG               TCTGGCAGCAGTCGT 100 42
JJQ57_RS16310 3475167 .. 3475190 -    -4  -3.27951   TAGCTCATGAGAACA          TTACCGCATGT AGG ACATA-GGTAA          CATTTGGAGATCCGT  48 272
JJQ57_RS16300 3473333 .. 3473349 - -13.7  -5.96219   CAGGCACAAAAAAAA              GCCCGCA GAG TGCGGGC              TGGTCATAGAGTCTC 100 29
JJQ57_RS16295 NONE
JJQ57_RS16290 NONE
JJQ57_RS16285 3472043 .. 3472064 -  -2.3  -3.14848   GCTCCGTAGGAAAAG           GCC-GTAG TCTACTC CTACTGGC           ATGCTCCGTTGGCAG  43 18
JJQ57_RS16280 3471563 .. 3471577 -  -7.1  -3.39668   GCGGAAAGCCGAGAA               CCGGT AGCAG ACCGG               TATCGCCACGGTCCA  57 206
JJQ57_RS16275 3470963 .. 3470983 -  -7.5  -2.71712   CGGCGGCCGCGAAAG            CCCGCGC GTAGATG GCGCGGA            TCAGCGCGTCTCGCA  52 26
JJQ57_RS16270 3470397 .. 3470437 -  -9.6  -3.35996   GATCGCCATGCAGAA CGGCCAGGCGCCGGGAC GGCAAGAG GACCCGACGCA-GGCCG  GCGCGACGCTGAACG  63 72
JJQ57_RS16260 NONE
JJQ57_RS16255 3469065 .. 3469081 - -15.1  -4.20025   AACGGCCAAGAGAAA              GCCCCGC GAT GCGGGGC              TTCTTCGTATTCGGG 100 50
JJQ57_RS16240 3465028 .. 3465043 -  -2.5  -3.21099   GGGTCGTATCAGGAA              GCC-GG CGGCT CCTGGC              CAGACGCTTCCTCGG  43 3
        pqqF 3462372 .. 3462386 - -11.4  -3.59979   CTCCGCGAGGTGAAA               CGACCG GGC CGGTCG               TGGCGGAGCCGATTA  73 256
JJQ57_RS16230 3461090 .. 3461134 - -13.3  -3.17212   CCAGCATTCTACGAA GGGCGCCGCCGCGGCCCCTAT CCT ACTTGGGTCGCGGCGGGGTCC TTCGAAAGTAGCGGT  73 42
JJQ57_RS16225 NONE
JJQ57_RS16220 NONE
JJQ57_RS16205 NONE
JJQ57_RS16200 NONE
JJQ57_RS16195 3453379 .. 3453422 -  -9.6  -3.14931   GCCAGCCTGCAGCAA GCCAACCTGCGC-GGCGCCGA CCTCT CCGGCGCCAGGGC-GG-TGGC CATCCAGGCCTGGGG  59 368
        pedF NONE
JJQ57_RS16175 3448677 .. 3448696 -   -15  -5.78622   CGAGGCGAAAAAAAA            GACGCGGC CAGG GCCGCGTC             GCGCCAGAACCCGCC 100 138
        pqqA NONE
        pqqB NONE
        pqqC NONE
        pqqD NONE
        pqqE NONE
JJQ57_RS16145 NONE
JJQ57_RS16140 NONE
JJQ57_RS16135 3440098 .. 3440123 -  -3.1  -3.27923   CGCCAATAGCATCAA         CCGGCTCGGCGG CTT CCG-CGTGGCGA         TCATCTGCCTCGGCG  46 402
JJQ57_RS16100 NONE
JJQ57_RS16095 3433343 .. 3433396 - -33.3  -3.53224   TACGCCCTCTGGAAA GGACGGTCCGCGCGGCCGGCGCCT TGCGTGG AGGCGCCGGCCGCGCGGACCG-CG ATTCAGAAACTCATT 100 28
JJQ57_RS16090 3432007 .. 3432040 - -13.1  -2.62184   GTTCCCTGGACACGA     GCGCGCCATGCCCCC GCGA AAGGACATGGCGCGA      TCACGCCGCGAGCGG  67 53
JJQ57_RS16085 3429978 .. 3429991 -  -9.5  -3.53012   GCGTGGCGCTGGAAA               CGGCG CGCA CGCCG                GTGACCTGCAACGCC  64 465
JJQ57_RS16045 3420567 .. 3420597 - -16.3  -3.31322   GCCAAGGCCTGAGAA      GCGGCGGATAACCG CGAG CGGTTATCCGCC-C       TACCCGACGTCGCGC  88 59
JJQ57_RS16010 3412341 .. 3412378 - -12.1  -2.69151   TGCTGCGACAGATGA  TC-GGC-TACGCGCCGG CGCTAT CCGGCGCGCAAGCCTGA   ATTCCGCCGTCCTTT  66 48
JJQ57_RS15980 3405233 .. 3405253 -  -3.9  -3.44051   TCTTGATCATGAGAA            TCCTTCGAC ATG GACGAAGTA            TGCGGATGGCGCGCA  51 47
        galU 3404338 .. 3404364 -   -23   -4.8048   GCCCCATACGAAAAA         CGCCGCGCCCCC ATC GGGGACGCGGCG         TTTTTCATCGGGAAC 100 49
        gorA 3402244 .. 3402267 - -18.2  -4.20136   AGCGCGAAAATGAAA          GAAGCCGGCC CTGG GGCCGGCTTC           TTCGTTCAGACGCGG 100 42
JJQ57_RS15950 NONE
JJQ57_RS15945 3399513 .. 3399525 -  -6.2    -3.524   CATCGACCCATACAA                GGCG CTGAT CGCC                ATGGCCCTGCTGGTC  56 253
JJQ57_RS15930 3397504 .. 3397518 -  -2.8  -4.01158   AACTCTAGCAAACAA               TGCGAA TGA TTAGCA               TTTGCTATTTGTGCA  58 73
JJQ57_RS15925 NONE
JJQ57_RS15920 3395819 .. 3395845 - -11.5  -2.63715   ACCCACGCCAGATCA         CGCCGCAGGCG CGCCT CGCCTGAGGCA         TCCTCAGCCGGCGCG  62 29
JJQ57_RS15910 3392754 .. 3392764 -  -2.4   -4.0371   CAGGGTTCATACAAA                 CTCG CGG CGGG                 CGGCTATATGGCCCA  57 189
JJQ57_RS15895 3389716 .. 3389750 - -22.8  -3.67775   ACCTCGACGGAAGAA     CGGGCGGGCGGCGCCG GAC CGGAGCCACCCGCCCA     TGCTCACACGGTGTG 100 29
JJQ57_RS15890 3388089 .. 3388106 - -14.1  -3.74077   CTGCAGATAGCCAAA             GCCCGCC GTGA GGCGGGC              TTCAGATGGGGGGCT  84 146
        sstT 3386471 .. 3386484 -  -9.5  -4.40298   AGCGAAACGAAGAAA               CCGCC CGAG GGCGG                TTTCTTCCGTGATCC  91 51
JJQ57_RS15880 3385321 .. 3385376 - -12.6  -2.59742   GTCAAGCTGGACAAG CGTCC-CTGAGCGAC--G-CGCGCCCGC TCCG GCGGGCGCGTCCAGCCGCACAGCGGGCG ATTCTTCTACTCGCC  67 136
JJQ57_RS15855 3379664 .. 3379706 - -16.8  -3.81447   GAGACGCCAGAACAA GGGGGGCGGGCGGACGCCGC GCC GCGTCATCCGCCCGCCCGGT TTCAGAACGGCCGCT  93 27
JJQ57_RS15845 NONE
JJQ57_RS15840 3375824 .. 3375878 - -11.4  -3.14564   GTACCTGCCGACCAA GCCGTTCTGAAGCGTCGCGCCGCCCGG CTCG CCGCCGGGCGCG-CGCCTCAG--CGGC TGGCGATGCTGACCC  67 18
        cynR 3373409 .. 3373419 -  -2.4  -3.02144   CGATCCCGCCGAACA                 GGGC GTC GCCT                 CGGGGATGGCCTCGA  41 265
JJQ57_RS15815 3371073 .. 3371115 - -10.7  -3.07236   AAACGCAGGCGAATA GGCGTATCGGCGGATAACGCC TCC GGCGTTATTCGCCC-TAC-CC GACAATCTTCCCCAG  66 134
JJQ57_RS15810 NONE
JJQ57_RS15805 NONE
JJQ57_RS15800 NONE
JJQ57_RS15795 NONE
JJQ57_RS15790 3362429 .. 3362439 -  -2.4  -2.62958   GATCTTAAGAAAAGC                 GCCG GGG CGTC                 TGGAAAGAACCTTTC  38 74
JJQ57_RS15785 3361079 .. 3361089 -  -4.6  -4.49756   CGGCAAAGACGAAAA                 GCCC CTG GAGC                 CGCAGGGCGAATAAC  71 97
JJQ57_RS15780 3359639 .. 3359675 -  -9.9  -3.05844   GCTCCTACGGCAACA    GCGCCGACCTGGCCCGC GCC GAGGGCGAGGACGACGA    CGAGGCGCGCTTCGT  60 85
        fusA 3347173 .. 3347207 - -21.4  -3.53012   TGCCGCTCCCGGAAA     GGCGCGCGCCGCCG CTGGCCT CGGCGGCGCGCGGC     GGCTCTCAGCGGCCC 100 31
JJQ57_RS15735 3344064 .. 3344092 - -15.3  -4.07568   TCTCCTCCGGCAAAA       GGGCGCGGCGCC GATACT GGC-CCGCGCCC        TTTTTCATTCGCCCA  95 380
JJQ57_RS15715 3338597 .. 3338611 -  -6.4   -2.5655   GTCAGCCACATCAAC               TCAACG TTG CGCTGA               CTCTCGCGTTCGAGA  48 483
JJQ57_RS15685 3332636 .. 3332653 -  -4.7  -2.64933   CATTCATTCACATCA             CTCCCGG GTTG CCGGACG              TTGTTCCTCTCATGG  43 61
JJQ57_RS15680 3331147 .. 3331157 -  -3.2   -3.1544   TGAGAGCAGAGCGAA                 CAAG TCT CTCG                 GTTCCACGTTAACTG  44 128
JJQ57_RS15675 3330393 .. 3330408 - -11.8  -6.06723   GCCTGCAAAAAAAAA              CCGCCC CGAA GGGCGG               TAAAAGGCAGGGCCA 100 119
JJQ57_RS15670 3328468 .. 3328478 -  -2.4  -3.41602   TGCACGCGATGACAA                 GGCC TGA GGCT                 TTCGTAATTATTTTT  47 69
JJQ57_RS15665 NONE
JJQ57_RS15660 3324255 .. 3324270 - -10.4  -2.98494   GACAACAACACGACA              CCGTGG TCGC CCACGG               CAACCACCCGCTCTC  62 196
JJQ57_RS15640 NONE
JJQ57_RS15610 NONE
JJQ57_RS15605 NONE
JJQ57_RS15600 3308235 .. 3308251 -  -2.1  -3.13522   ACCTCCTTATTAATA              TGCTACC GCA GGTTGCT              CCGAACCTACGGAAT  43 3
JJQ57_RS15595 3302213 .. 3302229 -  -3.5   -3.6053   TTTTTGAGAAATCAA              CGTTGCC AAT GGCGCCG              GGCAGACTTTGTTGC  51 171
JJQ57_RS15585 NONE
JJQ57_RS15580 3300173 .. 3300191 -  -2.2  -2.52464   CGGTCGTTGAATTCA             CTCATGGG AAT CCCTCGTG             GGGTGATGGAGATAC  37 61
JJQ57_RS15575 3299396 .. 3299428 - -17.7  -3.73509   ACAGGAAACCGCAAA      GGCGCCGGACGTCGC GAT ACGACGTCCGGCATC      GGCGGCCCTCAGCGC 100 34
JJQ57_RS15570 NONE
JJQ57_RS15565 3297756 .. 3297782 -  -7.8  -3.06261   GTCGAAGGCGGAAGA         GGTTCGAGCCCG CGG CGTGCGCGGACC         GGGCTACCAGAACCA  54 29
JJQ57_RS15560 NONE
JJQ57_RS15555 NONE
JJQ57_RS15550 NONE
JJQ57_RS15545 NONE
JJQ57_RS15540 3290648 .. 3290664 -  -3.6  -3.41051   CGATCCGCATCAGAA              CGCGCT CCGGT AGCGGG              CGATGGTCTGCAGGA  49 3
JJQ57_RS15535 NONE
JJQ57_RS15530 NONE
JJQ57_RS15525 NONE
JJQ57_RS15520 NONE
JJQ57_RS15515 3284372 .. 3284403 -   -13  -2.61383   AGGGTCAGCCAGAAG      GCGGAGCCGA-GCAT CTC AGGCCTCGGCCCCGC      GCTCGAGCTGTCGCT  67 9
JJQ57_RS15510 NONE
JJQ57_RS15505 3281795 .. 3281818 - -17.4  -3.60805   AGACGGGAGGGGAAA          GGCCCGGCGC AGGC GCACCGGGCC           AAGGGCGTCAGCGCG 100 33
JJQ57_RS15500 NONE
JJQ57_RS15495 3278569 .. 3278585 -  -7.9  -3.82499   ATGAAAGCCAGCAAA              CCCGGCC CCA AGCCGAG              CGGCAAGGCCAAGTC  66 288
JJQ57_RS15480 NONE
JJQ57_RS15475 NONE
JJQ57_RS15470 NONE
        lpdA 3272676 .. 3272702 -   -18  -5.14563   GCGGCCACGAAAAAA         GCCCCCTTGCCC GAC GGGCAAGGGGGT         AATGTGCGCCGGTGG 100 68
JJQ57_RS15455 3270183 .. 3270193 -  -4.6  -2.64155   CCTGCGCGAAACTCA                 GCGA GTG CCGC                 TCGGCAGCGGCTCGG  43 12
JJQ57_RS15450 3269065 .. 3269086 - -18.7  -3.34344   GGAGGGCGGAAGGAA           GCGGCCGCC GGCG GGCGGCCGC            AGGGCGGTCAGTCGG  93 33
        pvcA NONE
        pvcB NONE
        pvcC NONE
        pvcD 3264739 .. 3264749 -  -8.2  -3.63515   CGGGAGGGCGAATAA                 CGCC ACC GGCG                 TTATCCGCCACCGAC  65 82
        ptxS 3262150 .. 3262172 - -18.4  -3.53444   TCAGGCCGTGCGAAA           GCCGCCGGCA ACG CGCCGGCGGC           AGGCCGCTAGCCGCG  95 32
JJQ57_RS15415 3261328 .. 3261338 -  -6.8  -2.53382   AGGATCTCGAAGTCA                 GCCA TGC TGGC                 GTTCCTCCTGGAGAT  48 12
JJQ57_RS15410 3260361 .. 3260401 -  -2.1  -3.01712   GTTCTTGTCGCAACA  GGTGCCGCGTGGGCGGCGG GTT CAGGCGCTCCTGCGGCGCT  CGCGGTCGAGCAGTT  41 6
JJQ57_RS15405 NONE
JJQ57_RS15400 3257973 .. 3258008 - -20.4  -2.78712   CCGGCAAGTGAAGCA    GAACGGCGCGCCGGGC GTCG GCCCGGCGCGGCCTTC     AGGCGCCTCGCCGTC  91 24
JJQ57_RS15395 NONE
JJQ57_RS15390 NONE
JJQ57_RS15385 3253582 .. 3253625 -  -4.3  -3.05384   CTCTGCGCCAGCGAA CGCTACCTGGAGGGCCGCG ACGCGA CGGAGCCCGCCATGCTGCA CTGGATCGCCCCGGA  45 414
JJQ57_RS15375 3251453 .. 3251466 -  -3.8  -3.65046   GGCGCACGGCAACAA               GGCT GCGGCA AGCC                TGGTGTTGTCGGTCT  54 447
JJQ57_RS15365 NONE
JJQ57_RS15360 3249467 .. 3249483 -  -2.1  -2.62184   CCGCCGTCTAGAGCA              CCAGGCG CAT CGCGCAG              CGGCTGTCGGCGGCG  38 1
JJQ57_RS15355 3247133 .. 3247150 -  -9.9  -4.13767   CGGCCCAGGGTAAAA             CCTCAAG CAAA CTTGAGG              TCAAGTCAATCATGA  81 515
        pumA 3246266 .. 3246282 -    -5  -3.42147   GGCAAGGAAGAGGAA              GCGCGG CGGCT CGGCGC              CGACCAGGTGATCCT  51 450
JJQ57_RS15335 3244479 .. 3244492 -  -6.7  -3.12936   ATGGAAAGCTTAATA               TACGG ATAT CCGTA                TGTATTGCAAGCGCC  53 55
JJQ57_RS15330 NONE
JJQ57_RS15325 NONE
JJQ57_RS15320 NONE
        arsH 3241042 .. 3241093 - -13.4  -3.69092   AAGAGGAACTGGAAA CCGGCGATGGCGCCCTGCGGCCGC TGGC GCGGCTGAAGGGCGACGGCGCGAG CTTCACCCAGTTGTC  79 522
JJQ57_RS15305 NONE
JJQ57_RS15300 NONE
JJQ57_RS15295 NONE
JJQ57_RS15290 NONE
JJQ57_RS15285 NONE
JJQ57_RS15280 3234809 .. 3234820 -  -5.8  -3.87815   CTGGAGCGCGAGAAA                CAGG CCTG CCTG                 CGCCTCCACCTGTCC  60 254
JJQ57_RS15170 NONE
JJQ57_RS15165 3203341 .. 3203367 - -22.3  -4.18018   TCGCCGGATGGAAAA         GGCCCGCCCGG GATGA CCGGGCGGGCC         TTTCTTCGTCCATGG 100 56
JJQ57_RS15155 3202521 .. 3202531 -  -2.4  -3.07192   AAGCGGCGGAATAGA                 GGGG CGG CGCC                 GGGCGAGGCAAAAAA  41 74
JJQ57_RS15140 3199014 .. 3199031 -  -2.5  -2.81133   GATGTACCTATTAGA             CGCTCCG TGGC CGCCGCG              GTCTTGCTCCTGTCT  39 74
JJQ57_RS15135 NONE
JJQ57_RS15130 3197157 .. 3197169 -  -6.2   -3.2963   ACCACCCCCCCACAA                GGCG CTATT CGCC                GTTACGCCGGATTTC  52 136
JJQ57_RS15125 3195985 .. 3195998 -  -5.2  -5.72616   ACGGACACAAAAAAA               CCGC GCTTAG GCGG                TATGTCCGCCTTTCC 100 111
JJQ57_RS15120 NONE
JJQ57_RS15115 3194729 .. 3194757 - -14.6  -5.50499   CCATAGCCAAAAAAA        CACCTGGGCGAC TTTGG GTCGGCCAGGTG        TCTTAAAGGAAGCGC 100 48
JJQ57_RS15110 NONE
JJQ57_RS15105 NONE
JJQ57_RS15100 3192102 .. 3192118 -  -7.9  -2.70932   GTTCTTCTGCAACGA              CGACCTG GCC CAGGGCG              CGCTGTTGGAGGCCC  51 470
JJQ57_RS15090 3190561 .. 3190580 -  -2.1  -3.05384   TGCTGTTTCATTGAA            GCGCT TTTTCGGGGT AGCGC             TATCTTTGTCGGACA  41 52
JJQ57_RS15085 NONE
JJQ57_RS15080 3188935 .. 3188972 - -19.9  -2.90496   CCTTGCCGGAAATCA   GCCTTTGCTCCCGCTTC GTGG GGGGCGGGAGCAAAGGC    ATGGCGCCGGCTGGC  93 42
JJQ57_RS15075 NONE
JJQ57_RS15070 NONE
JJQ57_RS15065 3183992 .. 3184041 - -10.1  -3.28912   GCACATCCACACCAA TGCG-ATCCAATCGGCGGTGGA GGCGTTT TCCAGCGCCGATCCGACGCGCA CCTGGACGGTCCGCG  63 441
JJQ57_RS15030 3176609 .. 3176640 -  -5.7  -2.60194   ACCGGGGGAACGAAG      GCACATCCTAGCC CGAAGC GGCGGGGCTGTGC       AGGGGCGGGCAGCGG  46 185
JJQ57_RS15025 3175594 .. 3175612 -  -4.4  -2.78384   TCGCTGCCGATTACA             CAGGCGCG TCA CGCAACCG             ACAAAGCCTCGACTG  42 89
JJQ57_RS15020 NONE
JJQ57_RS15015 NONE
JJQ57_RS15010 3172326 .. 3172341 -  -3.2  -3.03243   AGCCATGGCGGAATA              CCTCCG TGGA CGAAAG               GATGGGGATGCGCTT  43 40
        ugpC NONE
JJQ57_RS15000 NONE
        xylB NONE
JJQ57_RS14990 3166728 .. 3166738 -  -2.4  -4.08692   CAAGCTGGCGGAAAA                 GGAC TTC GACC                 TGCTGCACGTGGTGC  58 514
JJQ57_RS14980 NONE
JJQ57_RS14975 NONE
JJQ57_RS14970 NONE
JJQ57_RS14965 NONE
JJQ57_RS14960 NONE
JJQ57_RS14955 3159072 .. 3159104 -  -7.5  -3.53012   GTCGCCCTCGGCAAA      GCGCCAGCCCTCCCA GGC CGGGAGGGCGGATTC      TACAGGCGTTTGTTC  60 25
JJQ57_RS14950 NONE
        tssB NONE
        tssC 3140590 .. 3140610 -  -2.6  -2.71712   TGTCGCTGCCGAAAT           CGA-GAATG ATCG CATCCATCG            CATCTGACTCCTGGA  39 97
JJQ57_RS14875 3140077 .. 3140106 -  -3.3  -3.02144   TGAGGCGCTCGAACA       GCGGCGGCAGGGC TCCG GACATGTCGGCGC        CCGGTCACTTGACCA  43 30
        tssE NONE
        tssF NONE
        tssG NONE
        tssH 3134336 .. 3134350 -  -3.5  -3.59979   GTTCTCCATCGGAAA              CG-GGC GGAT GCCGCG               ATGCCTCGGGACGCT  51 40
JJQ57_RS14850 NONE
JJQ57_RS14845 NONE
        tssI NONE
JJQ57_RS14835 3129575 .. 3129592 -  -4.7  -3.64205   TCAGAAAAACAGCAA             GCCAGCC CCAC GGCGAGC              GCGATGGGCTGGTCT  55 495
JJQ57_RS14825 3128547 .. 3128590 -  -5.2  -4.07568   TTCCTCTGCTGAAAA CGAGCGTCGCC-GCTC-CCGG TGAGG CCGGCGCGCAGGCG-CGCCCC TCATGGATGGGACTG  63 161
JJQ57_RS14820 3127039 .. 3127065 -  -2.8  -3.28712   CCTGTCGGCGGATAA         CGCGCGTGGC CTCGTTC GCCCTGCGCA         GCGAAGGCGGTAAGC  46 280
JJQ57_RS14800 3123036 .. 3123073 -    -6  -3.09803   GAAGGGGAGGGAAGA   GGGCAAGCCGCGCGGC TCGACG GCCGCGCGGCAAACAG    GATCAGGCGGCGGAA  49 28
JJQ57_RS14765 3114730 .. 3114750 -  -2.5  -2.87132   CGGTGCGTGGAGAGA            CCGCC GCTGTATGTCG GGCGG            GCTGGCGCTCCCAGG  40 76
        pvdR NONE
        pvdT NONE
        ompQ 3110076 .. 3110115 - -12.8  -3.23638   CGAAAGAGCGAGTAA  GGATGGA-GGAGGCCCGCG CAA CGCGGGCCTCAGTCTTTCC  GCGCGAGACCCTGGC  73 15
        pvdM 3106814 .. 3106829 -  -2.5  -2.70354   TGCTTGAGAAAGGTA              CGACG GTCGTT CATCG               GGAGGTCCGTTGCGG  39 46
        pvdN NONE
JJQ57_RS14730 3104619 .. 3104646 - -22.8  -3.57144   TCGCGGATGCGCAAA        GGCCGGAGCGAC CCGC GTCGCTCCGGCC         TTTCTTCGTCCGTAT 100 40
JJQ57_RS14720 NONE
JJQ57_RS14715 3099149 .. 3099174 - -21.9   -4.7254   ATTCGCCATGAAAAA         GCCCCGCCAGG TTCC CCTGGCGGGGC          TTTTTCATGAAGGCT 100 76
JJQ57_RS14695 NONE
JJQ57_RS14690 NONE
JJQ57_RS14685 NONE
JJQ57_RS14680 3067750 .. 3067766 -  -2.1  -4.70266   AACAGCATGGAAAAA              CGCCTTC TGT GGAGTCG              ATGTGCGATCAATGG  72 34
JJQ57_RS14675 NONE
JJQ57_RS14670 NONE
JJQ57_RS14665 NONE
JJQ57_RS14660 3064175 .. 3064199 - -17.1  -5.52384   TGTCGACGAAAAAAA          GGCCGGTGAGC AGC GCTCCCCGGCC          TTTTTCGTTACGAGG 100 47
        treA 3057284 .. 3057342 -  -3.8  -3.14564   CGACCTGGTGATGAA GGT-GCTGGCACGCAGTCCGCAGGTGCTGG TGG CCAGC-CCGG-AG-CTGCTGGCCCGCTACC GCCCGCCGGAGCTGC  45 421
JJQ57_RS14620 3055783 .. 3055794 -  -7.2  -3.54459   TGAATTTCGGGCAAA                GCCC GGCC GGGC                 CCGCGCTTCCTGCGC  62 66
JJQ57_RS14615 3055009 .. 3055060 -   -13  -3.14132   GTTGCTGTCCACCAA GCACCCGCTCGGGAAGGAAGGGGCA TGC CGCCCCTTCCTTCCCATG-GATCAC TTGCGCTGCGAGTCC  73 22
JJQ57_RS14610 NONE
JJQ57_RS14605 3052526 .. 3052556 - -10.5  -3.29144   CGATGTCGCGGATAA      GCGGCGGATAACCG CGAG CGGTTATTCGCC-C       TACGGAGTTGGGGAG  66 73
JJQ57_RS14600 3051659 .. 3051679 - -19.7  -3.55444   GGGCGATGCCGCAAA            GCCCCCGGC CAG GCCGGGGGC            GTCGCGCCGGGAAGC 100 45
JJQ57_RS14595 3050593 .. 3050617 - -12.8  -3.21099   CCCGGCGACGAGCAA          GTGGCCGCTC GCCTA GAGCGGCCGC          AACTTGCGCAACCAG  73 13
JJQ57_RS14590 3049161 .. 3049197 - -20.3  -4.25104   GGGGGGCGATGAAAA    TGGCCGGAAGGGAATGT TCC ATACTCCCTTCCGGCCA    TTCTTCATATATGTG 100 80
        pvdS 3034018 .. 3034040 -  -6.2  -3.96842   ACGCCAACAGAAGAA           CGGGCAGG CGCAATC CCTGCCCT           TGTGTCTCAGCGACG  65 32
JJQ57_RS14560 3031277 .. 3031297 -    -9  -2.78384   TGCCCGCGGAGGACA            CCGCGAAA GTCGA TTCCGCGG            CGCCCGGGACTGCCG  55 88
JJQ57_RS14540 3026568 .. 3026581 -  -2.3  -2.88999   GGGGGAGAGACGACA               GGCTC CTGG GAGTC                TTCTCCGCATGCCCA  40 78
JJQ57_RS14535 3026162 .. 3026172 -  -8.2  -3.28791   AGTGTCGGCGGATAA                 CGCC TGC GGCG                 CTATTCGCCCTACGG  60 103
JJQ57_RS14500 NONE
JJQ57_RS14495 3016056 .. 3016095 -  -5.5  -3.14132   GGGCGTTGCCAGCAA  GCGCGTCGGTTTCCTGCC GCAGG GGC-GGATGCCGGTGCGC  GAGGGCGCCGAGATC  49 288
JJQ57_RS14460 3005719 .. 3005764 -  -4.6  -2.62616   CGATCTGCGAGAGCA GCC-TGGTGGATATCGGCGACC TGGA GATCGCCGGCA-CCGCCGTGGC GCGGCAGAACGACGG  42 214
JJQ57_RS14440 NONE
JJQ57_RS14435 NONE
JJQ57_RS14430 2999490 .. 2999502 -  -3.3  -3.02829   GAGACTTTCTGAATA                TGCTG ATG CTGCA                AAAAAATGAATTGTA  43 344
JJQ57_RS14425 NONE
JJQ57_RS14420 NONE
JJQ57_RS14415 NONE
JJQ57_RS14410 2993358 .. 2993371 -  -2.4  -3.37354   CAGATTCAGCGAGAA               CTGT ATTTCA ACAG                ATCGACCAAGGCTTC  45 55
        gtdA NONE
JJQ57_RS14325 2960956 .. 2960970 -  -4.2  -3.15249   GACAGCCCGGATGAA               GGGC AGGGTGG GCCC               GCGCCGTGCGCGGGC  47 47
JJQ57_RS14320 NONE
        maiA NONE
JJQ57_RS14310 2957966 .. 2957982 -  -9.4  -3.22475   GCGACGCTCAGAAGA              CCTGCG AGTAG CGCAGG              ATCAGCCGGCTGCCC  61 1
JJQ57_RS14285 NONE
JJQ57_RS14280 2950921 .. 2950931 -  -8.2  -3.63515   GGGTAGGGCGAATAA                 CGCC AAC GGCG                 TTATCCGCCGATGCC  65 129
JJQ57_RS14255 2946877 .. 2946911 -  -8.5  -4.11216   GGCGGATTGGGAAAA    CGCCGCTG-GCCGCTC CTGA GAGCGGCACACGGGCA     CTGGAGGTATCAGTC  76 35
JJQ57_RS14245 2945743 .. 2945753 -  -2.4  -2.74144   GGCTCATGGGGAAAG                 GCTC GTG GCGC                 GGAAGGTTCAGGCTA  39 33
JJQ57_RS14240 NONE
JJQ57_RS14235 2944426 .. 2944445 - -12.8  -3.40775   ACCCGCAGCGAAAGA            GCCCGGCC ATCG AGCCGGGC             TTTTTCGTGGGCGCG  76 44
        mexE NONE
        mexF NONE
        oprN 2936083 .. 2936113 - -10.5  -5.24129   GCTGCGCATAAAAAA      GCCCCGCGA-C-CAG GAG CTGCAATCGCGGGGC      TGGAGTGGCCGATTT 100 63
JJQ57_RS14195 NONE
JJQ57_RS14190 NONE
JJQ57_RS14185 2932042 .. 2932080 - -10.1  -3.10164   CCACCCATTACTGAA  GC-GCCACCCGCGCCTGC AATG GCGGGCGCGGAGGTCCGC   CGCTCAGTCGCGCGT  62 29
JJQ57_RS14170 2928856 .. 2928870 -  -5.6   -4.4261   GCCGGAAGAGGAAAA               CGACAG CGG CTGGCG               GCTGATGGCCGGCGA  72 213
JJQ57_RS14155 2926179 .. 2926196 - -12.7  -5.60993   CGGCGGATAAAAAAA             GGCGCCA TGAC TGGCGCC              TCAGGACTTGTCCAA 100 87
JJQ57_RS14135 2922268 .. 2922296 - -10.9  -2.94045   CCAGCCGAACAACTA        CAGCGAGGCCCTG CAG CAGGGCCTTGGCG        GGCGCCCGCCGCACT  61 375
        antA NONE
        antB NONE
        antC 2918350 .. 2918367 -  -5.5  -2.62263   AGGCGTCCTACATCA             CCGGC GTGACCCT GCCGG              TAGCTGGCGGCGACC  46 54
JJQ57_RS14070 NONE
JJQ57_RS14065 2904845 .. 2904871 -  -5.6  -3.53012   CGCCGGTTGCTGAAA         CCGGCGTCAGGC AGC GCCCGTCGAAGG         GAACAGCAGGCGCAG  55 5
JJQ57_RS14030 NONE
JJQ57_RS14025 2891092 .. 2891115 - -13.8   -2.5805   AGCAGGGCGGATAAT          CGCAGCGCGG TCAT CCGCCCTGCG           TCGCAGAGACGCAGC  71 42
JJQ57_RS14005 2886708 .. 2886720 - -10.5  -3.04144   CCCGTAGGGCGAATA                CCGCC ACA GGCGG                TATCCGCCGATACCC  62 126
        xthA 2873225 .. 2873235 -  -2.4  -3.53091   AGGTTCCCGCGGAAA                 TCCG CTT CGGT                 GCCGAGGGCGACGGC  48 225
JJQ57_RS13945 2871864 .. 2871877 -  -2.4  -3.25823   TGCCGGCGAGATTAA               GTCA GACGGG TGAC                GCTAAGGTTACAGCG  45 33
JJQ57_RS13940 2870380 .. 2870390 -  -4.6  -5.04249   CTCGGAAAAAATAAA                 CCAG GCT CCGG                 GCGCCGGCAAAACGG  83 65
JJQ57_RS13935 NONE
JJQ57_RS13930 2869067 .. 2869084 - -14.1  -3.63627   GTGGTATAGGGGAAA             GGCCCGC GGGT GCGGGCC              TTTTTCATTCCGGGG  81 30
JJQ57_RS13920 2866448 .. 2866470 -    -4  -3.15249   GAGATGGCCGAGGAA           GTCTGCTCCG CGG CGATCCAGAC           CCTCGGTGGCTATGG  45 266
JJQ57_RS13885 NONE
JJQ57_RS13880 2857125 .. 2857135 -  -2.4  -3.15663   AGCGACGTGGAGCAA                 CTGG GCT CCCG                 GCAACTGGCGACCAA  42 444
JJQ57_RS13870 2856254 .. 2856269 -  -7.6  -2.87404   ATATCAACCAGGACA              TCGATC GACA GATCGA               GCTGCTCGGCGCGCT  52 179
        ctpH 2853695 .. 2853728 -  -5.1  -4.22591   AACAAGGGCAACAAA     GGCAACCAGGGTGGC CACG ACAACCATGGCGGCC      CCGGCAACAAGGGCG  69 483
JJQ57_RS13850 2851515 .. 2851531 -  -2.9  -2.73364   GGTGGACGGCAACGA              CCCGATC TTC GATTGGA              TCAAGGTCTCCGCCT  40 205
JJQ57_RS13825 2846379 .. 2846391 -  -3.3  -3.52896   GGAGCACCCATACAA                GACCC CAG AGGCC                GACCTGGCCGACGAG  49 462
JJQ57_RS13795 2841333 .. 2841351 - -13.1  -3.05384   CCTGCTGGCATTGAA             CGCCGCC ATCGA GGCGGCG             CGGGCCGGAGAGGCC  70 471
JJQ57_RS13780 2837926 .. 2837946 - -11.1  -5.45802   CGGGGAAAAGAAAAA            GCCCCGC GACGGGG GCGGGGC            TTTTCTACAGCGATC 100 49
JJQ57_RS13770 NONE
JJQ57_RS13765 2835734 .. 2835744 -  -8.2   -3.5393   ATCATCGGTTTCAAA                 CCCG GCA CGGG                 CGGAACCGAGGGAGT  62 142
JJQ57_RS13750 2832200 .. 2832226 - -16.6  -3.92324   GCCTCCAACAGGAAA         GCCCCGTAGCTC AGT GAGTTACGGGGC         TTTTTTCTTTCCTGT  95 383
JJQ57_RS13730 2827532 .. 2827555 - -14.6  -3.11619   TAACAACTCATTCAA          GCCGATGCCGC TTC GCGGCA-CGGC          TTAACTCAGGCGTTA  80 439
JJQ57_RS13690 2822197 .. 2822207 -  -8.2  -3.18582   GATGGCAGCGATGAA                 GGCC TGA GGCC                 TGTTCTACGACTCGT  58 296
JJQ57_RS13655 2816327 .. 2816357 -  -7.5  -3.92522   CGTCAACGTGAGAAA      CACCGCCGCG-CGC GACA GCGGCGCATCGATG       CTTTGCGAGTCAATT  68 188
JJQ57_RS13650 2815406 .. 2815435 -  -9.9  -3.54129   CATAGGGCTCTCAAA       CCTTGCAGGGGCC TTGT GGCCCCTGCATTA        CGCTTGCACCGCCTC  70 23
JJQ57_RS13615 2806856 .. 2806870 -  -4.2  -3.87815   CCCTATCCGCAGAAA               TTGCCC TGA GGGGAA               TCATGCCGGCTAGCG  58 35
JJQ57_RS13595 NONE
        qteE 2799734 .. 2799760 -  -7.8  -3.01712   GGCGCTGGCTCAAGA         GCCACCCGGCCG ACG CGGCCAAGGTGC         TGGGGCCGCTGTGGG  53 286
JJQ57_RS13545 NONE
JJQ57_RS13540 2788877 .. 2788893 - -15.1  -4.18018   TCCGCGTACTGAAAA              GCCCCGC TGA GCGGGGC              TTTTGCATTTTCGGG 100 126
JJQ57_RS13530 2787933 .. 2787951 - -11.7  -4.98531   TCCGCAAATGAAAAA             GCCCGTC GCGGG GACGGGC             TTTTCCGGAGGCGCT 100 46
        tusD NONE
        tusC NONE
        tusB NONE
JJQ57_RS13510 NONE
JJQ57_RS13505 2785463 .. 2785476 -  -2.5  -3.91897   CGGGCGATCGATAAA               TTTAT ATAA ATAAA                GGGCTATTCGTATCG  54 42
JJQ57_RS13500 2784023 .. 2784035 -  -6.2  -2.70932   TCGTGCCGGGAATCA                CCGC GGCCA GCGG                CTGCGCGGCCTACGC  47 421
        trxB 2775975 .. 2775990 -  -4.6  -3.53091   AGTCGGTGCGGGAAA              GCCAGG TCAG CATGGC               GGGGTAGGGGAGGGC  53 60
JJQ57_RS13465 2775315 .. 2775326 -  -3.6  -3.34488   AACTCGCCTAAAAAT                CCAG GTCG CCGG                 TAGGAGGCTGGTCGC  46 6
JJQ57_RS13460 NONE
        infA 2774161 .. 2774180 - -16.4   -4.4078   GCGCGGCAACGAAAA            CGCCCGGC AGAT GCCGGGCG             TTTTCTTTTGCAATC 100 67
        cspD 2770924 .. 2770941 - -12.7  -4.98255   CCCGAACGAGAAAAA             GGCCGGT TCGC ACCGGCC              TTTTTCATTTCCGCA 100 54
JJQ57_RS13430 2767007 .. 2767034 - -17.8  -4.83169   AGGCCTCGATAAAAA        GAAACCCCGAGC GTAG GCCCGGGGTTTC         TGCTTCGTCAGCGTG 100 47
JJQ57_RS13425 NONE
        mnmA NONE
        hflD NONE
JJQ57_RS13410 2763784 .. 2763813 -  -2.2  -3.52923   AAGTCAACGAAAAAG      GGGCGCA--TATCA TACA TGAAAGGTGCGCCC       GGTGGGGCATTCAGC  47 36
        purB 2762342 .. 2762360 - -17.4  -5.27335   TCCTTGAAACAAAAA             CGCCCGGC GCA GCCGGGCG             TGCAAAAGGGTTGCG 100 44
JJQ57_RS13400 NONE
JJQ57_RS13395 NONE
JJQ57_RS13390 NONE
JJQ57_RS13385 2759215 .. 2759250 -  -4.1  -4.18018   CGTTTGCATCGAAAA   TGCCCGCAAGAGCCCGCG CCC CGCGG-CT-TTGCCGG-A   GCGGGAGGCAATTCG  63 62
JJQ57_RS13380 2757027 .. 2757044 - -14.1  -4.98531   TCCGGAAATGAAAAA             CCCCGGC CGGA GCCGGGG              TTTTCGCGAGGCGGG 100 78
JJQ57_RS13375 NONE
JJQ57_RS13370 2754091 .. 2754107 -  -6.5  -3.74693   CGTTATTGCATTAAA              CCGGGAA TAT TTTCCGG              GCCGGGGCATGGCGG  62 185
JJQ57_RS13365 NONE
JJQ57_RS13360 NONE
        nuoC NONE
        nuoE NONE
        nuoF 2748828 .. 2748851 - -13.8  -2.68761   ACGACGACGAAACAT          CGCCGGACGG CTGG CCGTCCGGCT           GCAAAGCATCAGGCG  72 34
        nuoG 2745995 .. 2746029 -  -4.9  -2.79302   ATGATGGTGACCAGA    GCGGGAGTCAGC-CAA CTCA TTGTGCAGCCTCCTGC     AGACCTTCCACGGAG  44 7
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK NONE
        nuoL NONE
        nuoM NONE
        nuoN 2738689 .. 2738704 - -11.8  -5.27335   CGGGCCAAAGAAAAA              CCCCGC CGAG GCGGGG               TTTTCGTGGAGCGGG 100 45
JJQ57_RS13280 2730433 .. 2730445 - -10.5  -3.21276   TGCCGTTGCAGAAGA                GCGGC CGC GCCGC                CAGGGCTTAACAGTT  64 439
JJQ57_RS13250 2726096 .. 2726125 -    -5  -2.63631   TGAAGTTGGATACGA       TG-TGCCCGCCCA GGGAG TGGGCGAGGATCA       CCAGCGGCGTCTGCG  43 431
JJQ57_RS13240 NONE
        norR NONE
        queD 2720493 .. 2720505 -  -9.1  -2.85351   CCGTTTTAGAGCAGA                TGGCG AAG CGCCA                GGGGAGAGTCGGGCG  58 43
JJQ57_RS13210 2719812 .. 2719866 -  -9.4  -2.94322   AGGGGAGCGAAAGTA GCCA-GTGGGGTTT-CCGACGGCATC GGCAG GATGCCGTCGGGAAAACCGGCTTAGC GTTGCAGCCAGGATT  58 21
JJQ57_RS13145 NONE
JJQ57_RS13140 2707319 .. 2707341 -  -4.1  -3.22448   GGAAAGCGAAGCGAA          CCAGCCTAGT AGGA ACC-GGCCGG           CGGGTCATTGGCTAT  47 129
JJQ57_RS13135 2705933 .. 2705943 -  -5.4  -3.27774   CAGCGCAAGGACGAA                 TTGC GCG GCAA                 GCGGGTCGGGATCCT  51 103
JJQ57_RS13125 NONE
JJQ57_RS13120 NONE
JJQ57_RS13115 NONE
JJQ57_RS13110 NONE
        dapA NONE
JJQ57_RS13100 2699316 .. 2699328 -  -9.1  -2.79023   GAAGCGCAGGAACCA                GGGCA AGA TGCCC                GGTAGGGCGCCGGGG  57 291
JJQ57_RS13080 NONE
JJQ57_RS13075 2694414 .. 2694433 -  -2.7  -3.06796   GCTTAGTGCATCTAA            CGGGCGA GTTAAG CCGACCG             CAGAATGCGGGTCGG  41 14
JJQ57_RS13070 2693955 .. 2693972 -  -4.7  -3.07233   TCAGAATGCCGAACA             CCGTCAC CATG GCGTCGG              CCTCCGCAGCGACTT  47 11
        sul1 2692909 .. 2692932 - -16.8  -3.22841   AATCACAATACTGAA          GCCCCAACTG TTAT CAGTTGGGGC           TTTTTCTTGTCTGTT  86 218
JJQ57_RS13060 2690897 .. 2690912 - -10.4  -4.62002   ATGAATTATACAAAA              GGCAGC CAAA GCTGCC               TTTTTAGGGTATAGG  95 292
JJQ57_RS13055 NONE
JJQ57_RS13050 2689251 .. 2689272 - -10.2  -4.67968   GGAATAAATAATAAA           GGTCAGAG TCTTGG CTCTGACC            TGTTGTTTTTAGCTT 100 34
JJQ57_RS13040 2686134 .. 2686145 -  -3.6  -4.24326   AAACATTATCGAAAA                GCAG GTGG CCGC                 TGATATGGAGATCCG  65 209
        sul1 2683929 .. 2683952 - -16.8  -3.22841   AATCACAATACTGAA          GCCCCAACTG TTAT CAGTTGGGGC           TTTTTCTTGTCTGTT  86 218
JJQ57_RS13015 2681917 .. 2681932 - -10.4  -4.62002   ATGAATTATACAAAA              GGCAGC CAAA GCTGCC               TTTTTAGGGTATAGG  95 292
JJQ57_RS13010 NONE
JJQ57_RS13005 2680271 .. 2680292 - -10.2  -4.67968   GGAATAAATAATAAA           GGTCAGAG TCTTGG CTCTGACC            TGTTGTTTTTAGCTT 100 34
JJQ57_RS12995 2677154 .. 2677165 -  -3.6  -4.24326   AAACATTATCGAAAA                GCAG GTGG CCGC                 TGATATGGAGATCCG  65 209
        sul1 NONE
JJQ57_RS12970 2674401 .. 2674415 -  -5.7  -3.15249   GAGAGCGGCGAGGAA               GCGAT CAACC ATCGC               ACACTCAGCATGGCC  49 147
JJQ57_RS12925 2667192 .. 2667205 -  -4.5  -3.43132   AAACGGAAAATAAAG               CACGC TAAG GCGTA                ACTACCCTCGGCTAC  51 37
JJQ57_RS12915 NONE
JJQ57_RS12910 NONE
JJQ57_RS12905 2662636 .. 2662646 -  -8.2  -3.18582   GATGGCAGCGATGAA                 GGCC TGA GGCC                 TGTTCTACGACTCGT  58 438
JJQ57_RS12875 NONE
JJQ57_RS12870 2653626 .. 2653640 -  -4.9  -3.17075   TGTCCGCCAAGGGAA               CGCCC GCCTG GGACG               TCGCGCGGATCGACC  47 374
JJQ57_RS12850 2651782 .. 2651792 -  -6.8   -2.6927   ATGTTTGACATATCA                 CCCA ACT TGGG                 TACCAAAGTAAGCGA  49 242
JJQ57_RS12845 2651144 .. 2651161 -  -8.5  -4.21812   GGGCATTTAAAATAA             GACAAGA CAGA TCTTGTC              CACAGCTTTGTTGTT  76 45
JJQ57_RS12835 2648263 .. 2648288 -  -8.3  -4.47888   TTAAGCTAAAAACAA         CAGGTCAGAGC CAAG ACTCTGACCTT          TATTATTTATTCCAC  84 32
       intI1 NONE
JJQ57_RS12790 2639180 .. 2639190 -  -8.2  -3.22653   ACGAGTCGTAGAACA                 GGCC TCA GGCC                 TTCATCGCTGCCATC  58 19
JJQ57_RS12785 NONE
JJQ57_RS12780 2635041 .. 2635052 -  -7.2  -3.40597   CGCTGTACGGAAAGA                CCCC TGCC GGGG                 TGGCTGTCATCGCTT  56 186
JJQ57_RS12660 2611007 .. 2611020 -  -5.9  -3.13522   AGTTGTCCAGCAAGA               GCCGC CACG ACGGC                GCGCTGTTGTTGCAG  51 455
JJQ57_RS12645 2609637 .. 2609649 -  -3.3  -3.53012   GCCGCCTGCCTGAAA                GCCAG CGG CTTGC                GCCAGGTACGCGCGG  49 200
JJQ57_RS12630 NONE
JJQ57_RS12625 2607931 .. 2607947 - -10.8  -4.07568   TTGCCTTGCCGAAAA              GCCCGC CGAGC GCGGGC              TTTCTGTTGCCTGCG  82 49
JJQ57_RS12615 2607093 .. 2607120 -  -3.5  -5.75342   CGCGGGCAAAAAAAA        GACCATCTGC GGGGGGAGG GC-GATGGTC        TTCAAAGGAGCGTCG  95 204
         eco 2606447 .. 2606462 - -11.8   -4.8622   CGGCGCAACGAAAAA              GCCGCC CGTG GGCGGC               TTTTTCATGCGCGGC 100 43
JJQ57_RS12595 2604230 .. 2604266 -  -9.3  -3.20348   GCGAGGAAGAGGGAA    GAGCTCCGGCCCCCCTA GCA TGAAGTGTCCGGAGCTC    TACGGCCGCAAACGG  61 181
JJQ57_RS12585 2602204 .. 2602232 - -16.8  -5.22943   ACGAAACGCAAAAAA        GAAAACCCCGGG ACTGG CCCGGGGTTCTC        GTCGCGCTCGTGGGT 100 45
JJQ57_RS12580 2601399 .. 2601429 -  -6.1  -3.16564   GCTGGACGCCACCAA      GTGGAAGCGGATCG ACGG CGATCCGCATAC-C       GTCAACCTCAACGCA  51 320
JJQ57_RS12565 2600536 .. 2600546 -  -8.2  -3.61398   GGTGGTGCCGAAGAA                 GCGC TAG GCGC                 GGCGCCGGGATCAGC  65 36
JJQ57_RS12555 2598929 .. 2598957 -  -6.7  -3.40299   CGAGGAGATGGACAA        CATCATCGGCC GCCGCAA GTCCGACGATG        AAGAACTGGAAGACG  56 375
JJQ57_RS12540 NONE
JJQ57_RS12535 2595760 .. 2595786 - -10.2  -5.83822   GACAGGCAAAAAAAA        TCCCGACC-GC GGGGGA GCTGGTCGGGA         AATACCCTTGGGGTT 100 132
JJQ57_RS12515 2592696 .. 2592723 -  -7.6  -3.35679   CGGGCGCATTTATAA        GTCCGCCACCTC CAGC GAGACGACGGTC         GAACATGCGCGACGA  58 288
JJQ57_RS12505 2591898 .. 2591910 -  -5.5  -3.61398   CCGTTGTCGCAAGAA                TCCGA TGT CCGGA                TCTTCTGTTCAGCCA  54 512
JJQ57_RS12480 2588860 .. 2588877 - -12.7  -5.36441   CGCGGATAGAAAAAA             CGGCACC CCGG GGTGCCG              TTCTGTCGACGCGGA 100 41
JJQ57_RS12460 2585327 .. 2585353 - -13.6  -3.06183   CTCATCTCCAGGCAA         CCCGGTACGGCC TCT AGCCGCGCCGGG         GCCTCAGCCTCGCGC  70 367
JJQ57_RS12450 2584169 .. 2584196 -    -4  -3.41745   TTCGGACAATAGGAA        GCCA-TGGCGCCC CGA GGGCACCGCTGGG        GAAACATGCTGGGAA  51 48
       mep72 2582280 .. 2582311 - -13.8  -4.07885   GAGCGCTCCGCAAAA      TCCCC-CCGTGCC TGCCGGG GGCACGGAGGGGA      AGCGTCCTACTTCTG  90 32
JJQ57_RS12440 NONE
JJQ57_RS12435 2581279 .. 2581293 -  -5.6  -3.14132   TGTCTGGTGGATGAA               CCGCGA CTG TAGCGG               CGAAAGGGGGCTTGG  51 95
JJQ57_RS12430 NONE
JJQ57_RS12425 2579193 .. 2579251 - -10.9  -3.26471   CCATGCCCAGAGCAA CCT-CGCCGAGGCCGACAGCGCGGCCCAG GCG CTGGGGCGCATCGTCG-CCACGGTGGAAG AGCTGGACGGCCTCA  66 250
JJQ57_RS12415 2576294 .. 2576322 -   -16  -3.73414   CAGATGAGAGGGAAA        GCCCCGGGGG GATGAGCGG CCCCCGGGGC        TTTGGTGACCACCAT  93 239
JJQ57_RS12410 2575519 .. 2575543 -  -9.9  -2.71731   TCCAGTCTTTAATCA          GGCACTCGCGG CTC CCGCGAGTGTG          GAACTCGAGTAAGCG  60 98
JJQ57_RS12385 NONE
JJQ57_RS12380 2570349 .. 2570382 -  -5.2  -2.74144   CCCGGATCTTGAAAG     CCTTTTGGCAGGGA GGCGGG TTCCAGCCCAAAGG      AGCGTTCCCGGTGAG  44 200
JJQ57_RS12375 2567101 .. 2567123 -   -12  -4.08651   AGGGTAAGGAAAGAA           GCCAGGCC CTTATCT GGCCTGGC           TTTCGGGCATTTCCT  83 120
JJQ57_RS12370 2566228 .. 2566245 -  -6.9  -2.57944   CACGATCAGATCAAG             GCCCCGT CAAA ACTGGGC              GCAAGTGCAGTACCT  48 221
JJQ57_RS12360 2564168 .. 2564181 -  -8.1  -3.33865   GAGGCTAAACTAATA               GCTGC ATAC GCAGC                ATGTCGAGAAGAAAG  60 95
JJQ57_RS12345 2562569 .. 2562586 -    -7  -5.28414   GAAGAAACAGAAAAA             GCCACT TCAGGT AGTGGC              CATCGGGAAAGCATC  91 82
JJQ57_RS12185 2536098 .. 2536114 -  -8.1  -3.07443   GGAGAGTCGAGGTAA              TTAAACG CAG CGTTTAA              GGCTTGGTCAATACG  57 56
JJQ57_RS12180 NONE
JJQ57_RS12175 NONE
JJQ57_RS12170 NONE
JJQ57_RS12165 NONE
JJQ57_RS12160 NONE
JJQ57_RS12155 NONE
JJQ57_RS12150 2532633 .. 2532648 -  -4.6  -2.52896   GGAGGTGGTAATTGA              TCGCGC TATA GCGAGA               TTGGTAATTGATGCT  42 457
JJQ57_RS12140 NONE
JJQ57_RS12135 NONE
JJQ57_RS12130 2530150 .. 2530163 -  -3.8  -2.87132   CTCTTCGGCGATATA               CCCA TCTGCG TGGG                TCTGGCGATAAATAT  43 113
        dusA NONE
         tal 2526807 .. 2526837 -  -5.2  -3.08073   ACCAGTCGGAAGATA       TGGTGCGCGACAAG GTC CTGGAGGCGCACCG       CATCCTGATGGGCCT  49 184
        pilZ 2524674 .. 2524691 -  -8.3  -3.59262   TGCGACACCTGGAAA             GGCGGCC CTTG GGTCGCC              TTTCGTCGTTTCAGT  65 36
JJQ57_RS12090 2522972 .. 2523015 - -11.7  -3.08679   CGGCTTCATGGAATA CGT-CAGCGCCCAGGGACGC CAGCC GCGTACCGAGACGCTGCACG CCGAGCGGCGAGCAG  66 443
JJQ57_RS12080 NONE
JJQ57_RS12075 2521237 .. 2521253 -  -4.3  -2.71712   GGCGGGCGCCGAAAG              GTCCGTC CAT GCCGAAC              AGATTAACCTGTCGG  42 29
JJQ57_RS12070 2520881 .. 2520899 - -17.4   -4.8048   CGCGGATACGAAAAA             GCCCCGGC CAT GCCGGGGC             TTTTCATTTCGGCAA 100 46
JJQ57_RS12050 NONE
JJQ57_RS12045 2516772 .. 2516794 - -14.9  -3.48105   CGAAGGCATGAAACA           GAAGCCCCC GTCAT GGGGGCTTC           GCGTTTCATCGGCGC  83 31
JJQ57_RS12020 2510902 .. 2510931 - -22.3  -3.13403   TTGGGTGGATGAAGA       CGACAAAGGCGCC GGAA GGCGCCTTTGTCG        GTTGCGACCGTCGCT 100 54
JJQ57_RS12015 NONE
JJQ57_RS12010 2509766 .. 2509781 -  -4.7  -2.80816   CGGCGAGGTACGACA              TGCTC GCTGCA GAGCA               ATCAGTGGGGACGTG  44 226
JJQ57_RS12005 2508930 .. 2508980 -  -3.8  -3.37796   TCGGACGATCCATAA CCG-CTACCTCCCTGGTTGCTCG TGTCGG CGAGCAGTCTGTGAGGCGGGCGG TGGGCGAGGCTGTTA  48 38
JJQ57_RS12000 NONE
JJQ57_RS11995 NONE
JJQ57_RS11990 2507305 .. 2507315 -  -4.6  -2.61695   TCCAGCTTGAAATAG                 GCCA TGA CGGC                 TCTCCTGTGCCAGGG  43 70
JJQ57_RS11985 NONE
JJQ57_RS11980 NONE
JJQ57_RS11975 NONE
JJQ57_RS11970 2504061 .. 2504091 - -16.8  -4.07568   GGCGGGCGGCGAAAA       TGCAAGCGCCCCGC GAG GCGGGGCGCTTGTC       GGTGCGGTCTCATGC 100 35
JJQ57_RS11965 NONE
JJQ57_RS11960 2503203 .. 2503221 - -14.6   -4.8048   CGTCGAGACGAAAAA             GGCCACTC GTG GAGTGGCC             TTCTCTGGTGTAGCG 100 51
JJQ57_RS11945 NONE
        merP NONE
        merC 2500895 .. 2500905 -  -2.4  -3.28791   AGCCGTCTTTCACAA                 GCGC TTG GCGG                 GGAGTTCGCAGCCGT  45 9
JJQ57_RS11930 NONE
        merD NONE
        merE NONE
JJQ57_RS11915 2497823 .. 2497839 -  -2.1   -3.1247   ACTTCTGATATTGAA              CTGTCAG GAG CTGGCTG              CACAACAGCCATTAC  43 12
JJQ57_RS11910 NONE
JJQ57_RS11905 2494714 .. 2494728 -  -4.9  -3.17075   TGTCCGCCAAGGGAA               CGCCC GCCTG GGACG               TCGCGCGGATCGACC  47 374
JJQ57_RS11855 2488288 .. 2488311 -    -6  -4.30576   GCTCCATCAGCAAAA          GGGGATGATA AGTT TATCACCACC           GACTATTTGCAACAG  71 52
JJQ57_RS11845 2487070 .. 2487081 -  -7.2  -2.62184   GGCCGCTGGAGATCA                GCGC CCCG GCGC                 ACCCATTGAACATCG  51 363
JJQ57_RS11815 NONE
JJQ57_RS11810 2479250 .. 2479261 -  -3.6   -3.9373   TAGGTAAAATGTAAA                GGCA CCTG CGCC                 TCGCTAGGCAGAAGG  56 29
JJQ57_RS11795 2476289 .. 2476301 - -10.5  -3.01712   CGGTCTGCGGGAACA                GGCGG CTG CCGCC                GGCGGCGAAGACCGG  62 324
JJQ57_RS11780 NONE
JJQ57_RS11775 2471793 .. 2471831 -  -5.4  -3.53091   ATGCTCGGGGGGAAA  TG-CGTCAG-CGTCTGCT GGGCG AGCAGACGGCCGATGGCA  TATTGAAACAGCTCG  54 355
JJQ57_RS11760 2470625 .. 2470645 -  -5.4  -3.85698   CCGTCGCCTGAGAAA           GAGC-GGGA CGAA CCCCTGCTC            GATCAGGTACGCCAG  60 57
        arsC NONE
        wrbA NONE
JJQ57_RS11735 2467556 .. 2467601 -  -5.9  -3.59979   GGTCGGCACTGGAAA GCGGCGCAGGCAGGGCAGGAG GGGG CTCCTGCCTTACCATCAGCGT TCCCCGGCGACCCTT  57 19
        purM NONE
        purN NONE
JJQ57_RS11710 2462765 .. 2462780 - -11.8   -5.4505   GCGGGCAATAAAAAA              CCGGGC AATG GCCCGG               CTTTTCGTGGGAGAG 100 45
JJQ57_RS11700 NONE
JJQ57_RS11695 2461577 .. 2461593 -  -6.5  -3.02144   CCATTGGCCTCAACA              GCCTTCC AGG GGAAGGA              TGTAATGGCCATGGA  51 3
JJQ57_RS11690 2461182 .. 2461222 -    -2  -3.78329   CTGCATCAAGGCAAA TCCA-GCCTATTTCAATAG CAGG CTAATCAAATAGTCCTGGA  ATTGAGAAAAACCTT  52 42
JJQ57_RS11685 2460921 .. 2460951 -  -9.6  -3.83998   GGACCTGAGACCAAA       GGTGCGCCCCCG AAGTACG CGGGGGCGCATG       GTTCAGGCCGATTTA  74 28
JJQ57_RS11615 2448755 .. 2448782 -   -17  -4.74103   GGCGGAATGCAAAAA        GCCCCGGCGCTA TCGC TAGTGCCGGGGC         TTTTCGAATGTGGTT 100 36
JJQ57_RS11610 NONE
        mprF NONE
JJQ57_RS11595 2443719 .. 2443729 -  -2.4  -3.78934   GGCCGGGGACAAGAA                 CGGC GGA GCGG                 GGAGAGCTTGATCGC  52 43
JJQ57_RS11590 2443003 .. 2443022 - -10.6  -5.40072   TCCGCTGCAAAAAAA            GCGCGCCC GACT GGGCGCGT             TTTTTTGCACGTTTC 100 41
        rimO 2439475 .. 2439491 - -15.1  -4.72272   GTTGGCGATGAAAAA              GCCCCGC GGG GCGGGGC              TCTTCAGGGGGGCTC 100 39
JJQ57_RS11575 NONE
JJQ57_RS11570 2438567 .. 2438582 - -11.8  -3.67775   AGCGCCATGCAAGAA              GCCGCC CACG GGCGGC               TTTTTTCATGGCGGT  75 40
JJQ57_RS11560 2436111 .. 2436144 -  -9.3  -3.41051   TGAGCCTGACCATAA     CCGCCAGCCAGAGGC GTGC GCGGCGGGCAGGCGG      TAGGTTGCTGAAGAC  63 138
        alpR 2432768 .. 2432789 - -15.9  -3.70902   TGCGCCATACCGAAA           GGGCCTGCA GCAA TGCAGGCCC            TTTTTCTTTGCCCGG  90 93
JJQ57_RS11455 2418267 .. 2418285 -  -4.5  -3.25223   GATGCAGACCAGCAA             GTCGATC ATCCA GATCGGC             CTGTCCTGCGGTTTC  49 187
JJQ57_RS11370 2400490 .. 2400500 -  -8.2  -3.28924   GAGCCCCGCGGATAA                 CGCC AGG GGCG                 TTATCCGCCCTACAG  60 35
JJQ57_RS11360 2396951 .. 2396961 -  -5.4  -3.10354   TAGACTCAGTCAAGA                 CAAG AAC CTTG                 TACGGATCGGTAACA  47 81
JJQ57_RS11355 2396410 .. 2396449 - -14.3  -2.72471   CGCCGAGTACACAAT  GATCGCGCC-GGATGGGC GAGCT GCCCCTCGTGGCGCGATC  CTTCGGAGGTCGACC  75 58
JJQ57_RS11345 2393595 .. 2393620 -   -19  -2.68719   CCACCATAGTACAAG         GCCGCCGCGG GGTCAG CCGCGGCGGC          GGCGTTTCTCGTCAG  87 37
JJQ57_RS11340 NONE
JJQ57_RS11335 2391937 .. 2391955 - -10.2  -5.40072   CTGGGGCGAAAAAAA             GCCGGCCA TCA CAGCCGGC             TCAGGGTAACCGTGA 100 45
        pbpG 2390601 .. 2390611 -  -8.2  -3.33261   GGCCAAGGTGCAGAA                 GGCG CGG CGCC                 CGACCAAGCCTACGC  58 143
JJQ57_RS11305 2385732 .. 2385750 -    -3  -3.09175   AATCGCTATCGAATA             CCGGTCAA GGC TGGAACGG             CTGGTGATGCTCGGC  43 11
JJQ57_RS11300 NONE
JJQ57_RS11295 2384191 .. 2384210 -  -7.8  -4.25104   CGGCGTCTACGAAAA            CGCCTTCC CCAA GGAAGGCC             GCAAGCGCGCCATGA  74 309
JJQ57_RS11255 2375238 .. 2375267 -  -4.1  -2.54325   GGGTCGGAAATAGAT       TGCCCGCCGCCGGC CTC ACCAGCG-CGCGCG       GGTCGAACCGATCCA  41 11
JJQ57_RS11250 2373737 .. 2373752 -  -4.6  -2.70932   TGGCGGTTTCAACCA              TGGTGG CCGG CCTCCA               GCATCTGCTCCGGCC  44 3
JJQ57_RS11245 2372974 .. 2372988 -  -4.2  -3.75153   GTCGCGGAATGCAAA               GCGG TCGGCAC CCGC               ACTGTGAGCCGGTAG  56 151
        cbpD 2371630 .. 2371658 - -26.1  -4.07568   GCCTGGCGGCGAAAA        CGACTGCCGCCCG GAG CGGGCGGCAGTCG        AGGGCGTTACAGCAG 100 32
JJQ57_RS11235 2370241 .. 2370262 -  -6.5  -3.14602   CCGATGGCAGCAACA           CGCCTGGCGG TTT CGGCCAG-CG           GCTGGTGCGAGTCCA  51 289
JJQ57_RS11215 2365979 .. 2365992 -  -3.7  -2.81966   TGAAACCTTAGCAGA               CTGGC GAAA GCCCG                CGACAGAGCCTGTTT  42 52
        cysZ 2365005 .. 2365034 -  -9.9  -5.40474   AGGCGGGTAAAAAAA       GGCCGCCTGCG TGGGGAGG CACCGGCGGCC        AGTCGGTTCGGCAGC 100 185
JJQ57_RS11205 2362665 .. 2362690 - -13.4  -4.96501   CGGGATAAAAACAAA         GGGCATGGAA ATGGAG TTCCATGCCC          TTGTCGGCTGAATGA 100 139
JJQ57_RS11200 NONE
        plcR NONE
JJQ57_RS11190 2358198 .. 2358219 -  -2.1  -2.57132   GCCGCGCTGGAGAAC           GCCTGCCGC GAGC GCGACATCC            ACTTGCACCTGGGCA  38 127
JJQ57_RS11160 NONE
JJQ57_RS11155 NONE
         pta 2350405 .. 2350425 -  -8.1  -2.52464   GCCTGGCCGAAGCCA            GTGCCGCCC ACT GGGCGGCGT            TCCTTCAGGCCGGGG  53 30
JJQ57_RS11145 2349339 .. 2349356 - -14.1  -4.72272   GGCCTGGACGAAAAA             GCCCGCC ATTC GGCGGGC              TTTTTCATGGGCGCT 100 58
JJQ57_RS11125 2345666 .. 2345688 - -11.3  -3.71848   GGCCGTCATGAAGAA          GCCCGCG-CT GGTC AGTCGCGGGC           TTTTTAATGCGTGGA  76 117
JJQ57_RS11110 2342890 .. 2342916 -    -5  -4.08692   TAATCGGCCCCAAAA         CCTTGACAGGTC GAC GACCAGTCTACG         GCAAAGGGCTGCGAG  63 56
        ssrA 2342489 .. 2342514 - -12.7  -5.28176   TTCAGGCACAAAAAA         GGCACTT-GCGA TAA TCGCTAAGTGCC         TGATTTTGTTAGTGC 100 44
JJQ57_RS11035 2331872 .. 2331894 - -11.9  -2.55351   TTGCCGTAGATCAAC           CGGCCCGCC CTGAT GGCGGGCCT           TTTCATTTGGGTGGC  65 414
JJQ57_RS10865 2311169 .. 2311203 -    -5  -2.57244   TCAGGCATTAAGTGA    GCATGCCAACTTGCG CAGAAC CGCAGGTTGGC-TGA     ATGGCTTTGAGGCTT  43 90
JJQ57_RS10860 NONE
JJQ57_RS10855 2310079 .. 2310093 -  -8.5  -3.64703   TCTCCGCGATTCAAA               CCGGC GATTT GCCGG               TTTTACCCATCTGCC  65 229
JJQ57_RS10850 NONE
JJQ57_RS10845 NONE
JJQ57_RS10840 NONE
JJQ57_RS10835 2307308 .. 2307320 -  -3.3  -3.01712   GCGCCGGCGGCAACA                GTGGC CAG GCCAA                ACAGCGCGACGAGTG  43 68
JJQ57_RS10830 NONE
JJQ57_RS10825 NONE
JJQ57_RS10820 2305898 .. 2305916 -  -2.3   -3.7732   CCTCTACATCAATAA            GCGTCCGG CCAT CCGGT-GC             TTTTTTCCATATCTC  52 124
JJQ57_RS10815 2304630 .. 2304642 -  -4.8  -3.29829   TAGAGCTTGGCATAA                GACC TCCTT GGTC                ATTTCCTGTGGATAA  50 77
JJQ57_RS10810 2303817 .. 2303845 -  -5.1  -3.40134   AAAGGATGTGAAATA        CCCGACCGTCGCG ATA CCCGACCATTGGG        GCTTTGCCAATTGCA  53 364
JJQ57_RS10805 2301447 .. 2301461 -  -5.6  -3.10677   AACCAAGTCAGGGAA               GGTTCG CCA CGTACC               GATTCCAGCAGAGCT  49 312
JJQ57_RS10770 2298308 .. 2298320 -  -4.7  -2.72379   CGAACGCCTGAAGCA                GCGCG GCA CCCGC                TTCGTGATCGAGCCC  43 176
JJQ57_RS10760 2296608 .. 2296634 - -10.8   -3.1355   GGCATCGACAGCGAA         GCCGAGTTCCAG CGC CTGGAGCTTGGC         CACGAACAACTGGTG  64 433
JJQ57_RS10750 2295455 .. 2295470 -  -2.5  -3.01712   GGGCGGCGGGGAAGA              GCGCGC TCATG GC-CGC              ACCGCCGCGATCAGT  41 16
JJQ57_RS10745 2294084 .. 2294094 -  -8.2  -3.67792   CGAGAGGGATTTAAA                 CCGC ATG GCGG                 CGGCCGTGCGCGGCG  65 148
JJQ57_RS10740 NONE
JJQ57_RS10735 NONE
JJQ57_RS10730 2290557 .. 2290581 -  -3.4  -3.24747   CGCGGACATGACGAA         GCTCCTGC-CG GACG CGTGCCGGCGC          TGCGCGCGCCTTTCC  44 101
JJQ57_RS10725 2288853 .. 2288863 -  -2.4  -3.57561   CTCGAAGCCGGGAAA                 CGGC TGC GCTG                 GCACTGGGACATGTA  48 396
JJQ57_RS10705 2286011 .. 2286029 -   -16  -5.24129   CTGTCCCACAAAAAA             GCCCCGTC GGG GACGGGGC             TTTTCCTTGCATTCG 100 59
JJQ57_RS10675 2279537 .. 2279550 -  -5.2  -3.53091   ACGCCCTGGTGGAAA               CCGC TGGCCG GCGG                TTGTCACCTGGACCG  54 166
JJQ57_RS10665 NONE
        prpB NONE
        prpC NONE
        acnD 2273233 .. 2273265 -  -5.4  -2.57013   CGGCAATCGAATTCA      GGGGCAGCGGATGC GTTCG ACAGCCGCTGCCGG      TCGTCGGCGGATGAC  43 83
        prpF 2271968 .. 2272003 - -13.2  -3.01712   GTCGTGGCTGCAAGA    CGCCCCGGCCTTTCGC GGTG GCGGAAGGCCGGAGTA     AGGATAGGTCGGTTC  71 39
        prpD 2270245 .. 2270265 - -10.4  -2.60075   GGGCCTGGAAGCAAC            GCGCCTGC GTGGT GCAGGCAC            TGGCGCGGCTGGCCG  57 158
JJQ57_RS10630 2268614 .. 2268631 - -12.7  -3.89354   GCCGGAAAGGAAGAA             GGGCCTC GGAC GAGGCCC              TTTTTTCGTTGCGCC  83 104
JJQ57_RS10610 2262459 .. 2262469 -  -4.6  -3.33696   CTGGTGCTCAACGAA                 CCGG AAA CCAG                 CCTGCATCCCGACCT  49 247
JJQ57_RS10590 2259307 .. 2259338 -  -5.6  -2.52464   CGCTCCGGTAACCCA      GCGCTGATCGAGCC TGTG GGCGCGTGAAGCGC       CCGCGCATGGAGACG  45 145
JJQ57_RS10575 2251718 .. 2251742 - -10.7  -2.90212   GCAGGAGTCCATATA          CGGATAACGGC GCG GACGTCATCCG          CCGAGCGAATTCGTC  64 55
         lon 2248224 .. 2248252 - -15.3  -3.75153   CGGCTCGAATGGAAA        GGGCGCCAGCA TAAACCC TGCCGGCGCCC        GAGCGCCAAGGTTGG  90 81
JJQ57_RS10560 2247770 .. 2247795 -  -3.1  -3.48276   GGTCTTCGTACAGAA         TGTGTCCGCTG CGGG CAGCGGTTTCA          GCGCACCTGGATCGC  49 23
JJQ57_RS10555 2246895 .. 2246907 -  -3.3  -3.55622   TTCAATCGGCTGAAA                GCAGC GTG GTTGC                TGGTCTGGCGGCGGA  51 60
JJQ57_RS10550 NONE
        cmoA NONE
        cmoB 2244394 .. 2244411 - -11.3  -5.54894   AAGCCATGAAAAAAA             GCCCATC CGAG GATGGGC              TTTTCCCTATTCGCT 100 42
        nadB 2231329 .. 2231343 -  -8.5  -3.04144   CGGCGAGCCGGAAGA               CGCCG ACCTG CGGCG               GATGGTGCGGATGAT  55 470
JJQ57_RS10460 2229829 .. 2229868 -   -15  -4.07885   CATTTCCTTTGAAAA  CGCAATGGCCGGAGCACGC TGT ACGTGCACCGGCCATGG-G  AATACTGGCGGGCCG  93 69
JJQ57_RS10455 2228507 .. 2228537 - -10.3  -3.64703   TGGCGCGCATCGAAA      GCGGCGCCC-AGGC CATC GCCGAGGGCGGCGC       CGAGCGTATCGACCT  70 463
JJQ57_RS10440 NONE
JJQ57_RS10435 NONE
JJQ57_RS10430 NONE
JJQ57_RS10425 NONE
JJQ57_RS10420 2221281 .. 2221297 - -10.8   -5.4505   GCGCGGAATAAAAAA              GCCCGC ACGAG GCGGGC              TGGAAAACGCCACAC 100 65
JJQ57_RS10400 NONE
JJQ57_RS10395 NONE
JJQ57_RS10390 NONE
JJQ57_RS10385 2213797 .. 2213813 -  -2.2  -2.78384   GCGCGGCGGATCAGA             GC-CCCG CCAG CGGATGC              TCGCCCTCCCAGGTC  39 4
        mmsB NONE
JJQ57_RS10375 2211989 .. 2212003 -    -7  -3.85698   CTTCCGTTCGAGAAA               TGCCGC AGA GCGGCG               TCGATCAGCATCATC  65 104
JJQ57_RS10370 2211298 .. 2211316 - -13.1  -3.21595   AAGGCTGACGACGAA             GGCGCCC GAGAG GGGCGCC             TGGTCTTTTCAGTAG  73 34
JJQ57_RS10360 2208233 .. 2208244 -  -3.6  -3.31144   CCGCGACCGTGACAA                CCGC GGGC GCGA                 CTGGAACCGTTCCTG  47 78
JJQ57_RS10335 NONE
JJQ57_RS10330 2204761 .. 2204781 -  -2.3  -3.05384   GGCGCGCGGATGCAA            GCATCGCGC GCC GGGCGGGGC            GTTTCAGCGGCGAAC  41 29
JJQ57_RS10325 NONE
JJQ57_RS10320 2203694 .. 2203712 -  -8.8  -3.55444   GCTCCATGCGGGAAA             GGCTGTCG CTC CGACAGAC             GCCATTCAGCTTAGC  65 113
JJQ57_RS10315 NONE
JJQ57_RS10310 2201776 .. 2201797 - -18.7  -2.90075   GGGCCGGGAAGGAGA           GGGGCGGCG CGGC CGCCGCCCC            GGCGGTTCACTTGAG  91 32
        phaG 2200313 .. 2200326 -  -5.9  -2.66812   AATGCCATTATACGA               CGCCC GCTC GGACG                GCTTTTGCGGCCAGG  46 149
JJQ57_RS10300 2199942 .. 2199969 -  -4.3  -4.19336   AATCACTTCAAGAAA        GAGTAAC-CAGA TTACT TCTATGTTACTC        AGAAATTACCTTTTG  63 301
JJQ57_RS10280 NONE
JJQ57_RS10275 NONE
JJQ57_RS10270 2192914 .. 2192938 -  -2.7  -3.14931   GTCACTGCTCAGGAA          GGAGAGGACCT GGC AGATCGGCCCC          GAGCCGGCGGTGCGC  43 54
JJQ57_RS10265 NONE
JJQ57_RS10260 NONE
JJQ57_RS10255 NONE
JJQ57_RS10250 NONE
JJQ57_RS10245 NONE
JJQ57_RS10240 NONE
JJQ57_RS10235 NONE
JJQ57_RS10230 NONE
JJQ57_RS10225 NONE
JJQ57_RS10220 NONE
JJQ57_RS10215 NONE
JJQ57_RS10210 NONE
JJQ57_RS10205 2186052 .. 2186070 -  -4.4  -2.94099   CTGGTCGAGTACATA             GGCGCGCG TGG CAAGCACC             ACTGCAGGATCGATC  44 462
JJQ57_RS10195 2184179 .. 2184232 -  -7.4  -2.78463   AGTGGTTGGATGACA CTG-CAC-AGGCTGCCGCGCGCGCGGT GGA ACAGCGAGCGAGGC-GCCTTGTGGCAC GGTGCTCTACAAAAT  52 42
JJQ57_RS10190 NONE
JJQ57_RS10185 2182375 .. 2182393 - -17.4   -4.0492   CAAGGGGGAGAGAAA             CCGCCGGC CGG GCCGGCGG             GAAGGGATTACAGGC 100 33
JJQ57_RS10180 2181988 .. 2182012 -  -9.9  -3.64703   CGGCGCCCAGTGAAA          CGTCACGGCCA GGT CGGCCATGGCG          TTTTCTACGCGATCA  70 30
JJQ57_RS10175 NONE
JJQ57_RS10170 NONE
JJQ57_RS10165 NONE
JJQ57_RS10160 2177439 .. 2177459 -  -3.9  -5.00616   TTTTGGCGTAAAAAA            CACAGGAGG GGC CGTTCTGTG            GTCTTTGATCATCTT  81 34
         dcm 2176280 .. 2176292 -  -4.9  -2.86288   GAAATCCTAGCAAAT                TTTCT AGA AGAAA                GACTCGATTTGGTCT  46 39
JJQ57_RS10130 NONE
JJQ57_RS10125 NONE
JJQ57_RS10120 NONE
JJQ57_RS10115 2171765 .. 2171778 -  -8.1  -3.55622   TGCAACTTCCCCAAA               CCCAC GGCA GTGGG                GATGGGCGTCGGTTG  65 42
JJQ57_RS10110 NONE
JJQ57_RS10105 2168766 .. 2168780 -  -7.1  -2.62184   GGGGTTGTCAGACGA               GCTGG AACAG CCAGC               AACGGACGGTCTTCG  48 3
JJQ57_RS10100 NONE
JJQ57_RS10095 NONE
JJQ57_RS10090 NONE
JJQ57_RS10085 NONE
JJQ57_RS10080 2167214 .. 2167232 -    -8  -3.53012   CGCGCCCGGTTGAAA             CCGGCGGC ACC GCCGCCCA             GGCCGCAGCAGAAGT  60 61
JJQ57_RS10070 NONE
JJQ57_RS10065 NONE
JJQ57_RS10060 NONE
JJQ57_RS10055 NONE
JJQ57_RS10050 2165216 .. 2165233 - -14.1  -2.97707   CGACACCAAGAAGTA             GGGCCGC TCAC GCGGCCC              TTGTTGGCGTCCATC  75 15
JJQ57_RS10030 2162062 .. 2162082 -  -2.4  -4.72188   GCAATGGAAAAGAAA            GGGGGTCA GCGAT TGTCCGCC            TGCGGGCGCACGGCT  72 10
JJQ57_RS10025 2161481 .. 2161508 -  -7.6  -2.87564   CCAGCGGGCGACATA        GCGGCTGCTGTCG TTC CGGCT-CAGCCGC        TGGCGTCGAATGCGG  53 18
JJQ57_RS10010 2159571 .. 2159589 -  -3.8  -3.39895   CCTCCCACGAATCAA             GGTCTTTC GTC GGAAAACC             CAGGGGGCAGGTAGG  51 187
JJQ57_RS10005 2158618 .. 2158640 - -11.2  -3.53012   CCCTGTCCGTCGAAA           CCGCCAAGGG TAG CGCCTGGCGG           GATAGCGGGCCAGCC  71 71
        catB 2157810 .. 2157839 -  -2.7  -3.34398   GGGCTGGCGGAAACA       CAGCGTTTCGTTCC GCC GGTACGGT-CGCTG       GAGTGGCTCTGGCAC  45 141
        migA NONE
JJQ57_RS09990 2156036 .. 2156058 - -10.4  -3.61517   AGCTCCCTCGAAGAA           CGGCCGCGGG CGT CAAGCGGCCG           GCCTACCCGTTGTCG  70 111
JJQ57_RS09985 2154584 .. 2154605 -  -5.1  -3.68827   GAGTGACGACTGAAA           CACTCAGGCC TGG AGCC-GAGCG           ACGAGCGGCTGCCGG  58 43
JJQ57_RS09980 2153224 .. 2153247 -  -5.2  -3.33696   CGGCGCTTGAACGAA          CCGCGCAAGT TCTC AGTCGCGCAG           CACCAGCGGCGCGCC  50 14
JJQ57_RS09975 2152013 .. 2152033 - -16.9  -3.57144   GGGTTGAGGCGGAAA            GACTGGCGC GCA GCGCCAGTC            TTTCGCTGAGCCAAC  89 244
        gspI 2116983 .. 2116997 - -11.4   -3.4252   GCTCATCGAGCAGAA               CGGCGA GGT TCGCCG               GGTGCCCATGCAGCG  70 86
        gspH NONE
JJQ57_RS09850 2114898 .. 2114947 - -10.8  -3.17054   CAGGAAACCATCGAA CTGCTCGGCGGC-GA-GGCCGA-GA TCA TCGCCAGCCACCCGCCGCAGAGCAG CCTGCGGGTGATGGC  64 480
JJQ57_RS09830 2112328 .. 2112374 - -13.7  -3.42574   CGAACTCGACGAGAA CTT-CG-GCGCCCGCCATCTGGC CGA GCCGGAAGGCGGCCGCGCGCAAG GCTGGAAGAGCTTCG  77 270
        imuA 2111026 .. 2111071 -  -5.4  -3.40403   GTTGCGGCAGGAGAA TGCAAGCCCAGAGCATGGC CGCCTCATT GCCAGGCGCTG-GCTGGCA GGGCGGTCGCCGGCG  53 3
JJQ57_RS09815 NONE
       dnaE2 2106214 .. 2106237 -   -11  -4.13767   GCTCCTATCCCAAAA          CCCCTGGTTA GCGA TGACCAGGGG           TTTTGCTTTTGCGCG  84 343
JJQ57_RS09780 NONE
JJQ57_RS09775 2095368 .. 2095397 -  -9.9  -3.14132   GGGGTGTTCGAGGAA       GCAGTG-CGGCGCA AGG TGCGCCGGCTCAGC       GGGCTGATGCTGCAT  62 128
JJQ57_RS09745 NONE
        chrA 2081964 .. 2081984 -  -8.2  -2.70932   GCGCCTGTTCAACGA            CCGCACCG GGATT CGCTGCGG            CAGCCACCAGCAGCC  52 218
JJQ57_RS09730 2079744 .. 2079758 -  -5.6  -3.92602   CGAACATGTGAGAAA               CCGGTC AGA GACGGG               GCGGCGATTATGCCA  62 146
JJQ57_RS09725 2078223 .. 2078242 - -10.7  -5.40474   AGCGCGGCAAAAAAA            CGCCTGC GGACAA GCAGGCG             TTTTTTTCAACCGGC 100 49
        fppA 2074304 .. 2074324 -  -2.6  -2.53876   GTGCATTGGAATGCA           GCC-ATACC GAAT GGTATTAGC            CATAAGCATATAGTC  37 68
        pprB 2072973 .. 2072988 -  -2.4  -3.97947   CGGAGCGACGATAAA              GATCGG CAGT CCGGCC               AACATCGATCAGGTC  56 456
         flp 2063548 .. 2063575 - -14.2  -4.40173   AGCATAAAGGCAAAA        TAGTGGCGCCAT GAAA ATGGCGCCACTG         GAGGGAAATCGCTCT 100 52
JJQ57_RS09650 2061430 .. 2061445 - -11.8   -4.7373   CCAGGCCATGAAAAA              GGCGCC CGCG GGCGCC               TTTTTCATGGGGGCT 100 95
        pctA 2057550 .. 2057563 -  -9.5  -5.32944   TGGAGAACGAAAAAA               GCGCC CGTG GGCGC                TCTTCATCGGTAGGC 100 94
        pctB 2055403 .. 2055433 - -24.2  -3.40522   ATCCTGGCAGGATAA       GGGTGAACAACGCC GTT GGCGTTGTTCACCC       TACGAATGGCCGGGG 100 98
JJQ57_RS09630 2054057 .. 2054089 -  -2.6  -3.02144   CCACGTCGTGCAACA     CCAGCAGCA-GGCTG CGTT CAGCCATAGCGCGGG      AACCTCGCCTCGCTG  41 10
JJQ57_RS09625 NONE
JJQ57_RS09620 2052211 .. 2052229 - -10.2  -2.78816   CCAGCCGTTACGACA             TCGACGCC CTC GGCGACGA             GGACGGAACCGAGTT  57 118
        mvaT 2050560 .. 2050578 - -11.7  -4.98531   GGCGGAAATGAAAAA             CGCCAGC ACTGG GCTGGCG             TTCTTCGTGGAACTG 100 47
JJQ57_RS09595 2048081 .. 2048102 - -15.1  -3.09516   GGCGTTATCAGGCAA           CCGGGCCGC CGCG ACGGCCCGG            TCTGCACCTCAGTTG  81 34
JJQ57_RS09590 NONE
JJQ57_RS09585 NONE
JJQ57_RS09580 2044725 .. 2044759 -  -2.7  -2.64806   GCAAGCAACAGGAAG    CGCGCGCGCC-GGCTCA TCA TG-GCTTGGCTCCCGCG    GCGAAAAGGCTGCGC  38 7
JJQ57_RS09575 NONE
JJQ57_RS09570 NONE
JJQ57_RS09565 2040839 .. 2040857 - -10.3  -3.37796   TCGCATCACCGACAA             GCCGATG GGCTA CATCGGC             AACGTCTCCGAGGAC  65 297
JJQ57_RS09545 2038856 .. 2038873 -    -4  -2.63596   TGCCATTGCAGACCA             GGCGCC GCGACG GGCGCT              TGATCTGGGTCAGTC  41 50
JJQ57_RS09540 2037837 .. 2037862 -  -3.9  -3.29144   GGACTCCTTGGATAA         CGCTGGCGTGCA GGC TAC-CACCGGCG         AGGCTCGGCGGCGAC  48 62
         pyk 2036334 .. 2036344 -  -8.2  -3.30124   CCGTAGGGCGGATAA                 CGCC ACG GGCG                 TTATCCGCCGCGACG  60 46
JJQ57_RS09515 2031560 .. 2031578 - -13.1  -4.72272   TGGCCGTACGAAAAA             GCCCGGC GCGGG GCCGGGC             TTTTTCAGGGACGGA 100 47
JJQ57_RS09430 2015238 .. 2015257 -    -7  -2.78463   AGCCGCGCCATCAGA            CCGCCGCC TTGA AGTGGCGG             GCGTAGCGCGGGCAG  49 1
JJQ57_RS09425 2014211 .. 2014245 -  -4.2  -3.21695   CCAGGAGGAACTCAA    GGCCAACGTCG-AGC TGCGCG ACTACGTCGCCGGCC     TGGGGCTGGGCCGCG  47 237
        pyeR 2012364 .. 2012375 -  -2.2  -3.29273   GCGAGGACGAGAAGA                GACG CCGG CATC                 GGTCGAGCTCCTGGA  45 73
JJQ57_RS09405 NONE
JJQ57_RS09400 2010068 .. 2010106 - -18.9  -4.16943   CGCTAGACGGGAAAA   GCACAGAGCCCGCCACG GCAAG CGTGGCGGGCTCTTTCC   TGGCTGGCGCGATCA 100 38
JJQ57_RS09375 2005570 .. 2005581 -  -3.6   -3.2614   CACCCTGGACATCAA                CCGC GCCC GCGA                 ATACCTCGACTACGA  47 108
JJQ57_RS09365 2003157 .. 2003170 -  -8.1  -2.70932   CCGCTTTCTCAAGGA               CCTCG GCGT CGAGG                GCGGTTTCATCCACC  51 286
JJQ57_RS09355 NONE
JJQ57_RS09350 2001213 .. 2001235 -    -9  -2.71924   GAGCGCTCCGGAAAG           GGCGCCGGGT GCG ACTCGGAGCC           TAGGCTCCCAGTGCC  57 215
        sodB 2000450 .. 2000481 - -23.2  -4.35116   GACCGCAGATTAAAA      CGAAAAAGCCCGGC GAAT GCCGGGCTTTTTCG       TGGTTCTGATCAGAC 100 41
        bifA 1998077 .. 1998121 -  -7.7  -2.71731   GGCATCGGGCAAGCA GCGCC-GCGCCGACCCGCCA CCAGCT CGGCAAGCCGGGGGAGGCGC ATCCTTTCATTCTCT  51 157
JJQ57_RS09325 1995197 .. 1995227 - -16.8  -3.54424   TTCGAGGCCCTGAAA       CGCAGCGTGCGGCC ATG GGCCGCACGCTGTT       GGCGCAGGAAGGAAT  91 40
JJQ57_RS09320 1993648 .. 1993660 -  -3.3  -3.01712   GTCGTGGGCGGAACA                TGTGG GCT CCTCA                GAGTGAATTCAGGAA  43 23
JJQ57_RS09315 NONE
JJQ57_RS09310 NONE
        mexV NONE
        mexW 1987033 .. 1987065 - -12.7  -2.62396   GATGGGGCGACAGCA      CCGGCGGACAGCG CTGTTGT CGCTATCCGCCGT      TTCCGATCAGTGTGC  67 32
        pncB 1985631 .. 1985648 - -14.1  -3.61398   CTCCTTGTCGAAGAA             GCCCCGC CTTG GCGGGGC              TTTTTCATGGGCGAT  81 115
JJQ57_RS09265 1980751 .. 1980761 -  -8.2  -3.01712   CTGGCTGCTGCAAGA                 GGCG CGC CGCC                 TGGGCGTGCGCGGTG  57 204
JJQ57_RS09250 1979319 .. 1979336 - -14.1  -4.07568   CCTGTGGTTGGAAAA             GCCCCGC TTCG GCGGGGC              TTTTTTTATTCCTCA  90 38
JJQ57_RS09225 1974932 .. 1974949 - -14.1  -4.72272   GGCCTGCACGAAAAA             GCCCCGC GATA GCGGGGC              TTTTTCCTTGCCGGG 100 48
JJQ57_RS09210 NONE
        ampG 1970548 .. 1970565 - -14.1  -4.75372   ACGATCCACGAAAAA             GGCCGGC GAAT GCCGGCC              TTTTTCATTCTTGCC 100 41
JJQ57_RS09190 NONE
JJQ57_RS09185 NONE
JJQ57_RS09180 NONE
JJQ57_RS09175 1964044 .. 1964059 - -10.4   -5.5604   GGAATGAAGAAAAAA              GGAGGC TTCG GCCTCC               TTTTTTTCGTCTCGA 100 61
JJQ57_RS09145 1956244 .. 1956299 -  -6.8  -3.40403   CGTGGTCGACGAGAA CCGCGTGCTCAACGAAGACGGCCTGCG TTA CG-AGGACGAGTTCGTCAAGCACAAGA TCCTGGATGCCATCG  56 283
JJQ57_RS09050 1935255 .. 1935270 -  -6.1  -4.09685   CCCTATCGGTCAAAA              GCTGG TGGTCC CCAGC               GGCTGGACCTGGCCA  65 4
JJQ57_RS09045 NONE
JJQ57_RS09040 NONE
JJQ57_RS09035 1933640 .. 1933657 - -11.3  -4.90266   GCGAGCAATGAAAAA             GGCGATC GAAG GATCGCC              TTTTTTTCGTTCGCT 100 46
JJQ57_RS08995 1927492 .. 1927504 -  -6.9  -2.71731   GGGAGGGGCGAACGA                CCGCA TCG CGCGG                TTGTCCGCCGAACCC  49 66
JJQ57_RS08985 1925118 .. 1925148 -  -4.6  -3.64703   GGTTCTGTAGGGAAA      GCGCCGGCGCCGA TGCCGT TCGG-GCAGGCCC       GGCGATGTCCGGCTC  55 39
JJQ57_RS08980 1923997 .. 1924017 - -16.9  -4.13654   GGCGGAAACGAGAAA            GGGGTTGCC GAT GGCAACCCC            TTTTTTCATGGACGC 100 49
JJQ57_RS08960 1920101 .. 1920118 - -14.1   -4.7497   CGCAGCCATGAAAAA             GCCCCGC GGAT GCGGGGC              TTTTTCATGGGCGTC 100 60
        mltB 1915388 .. 1915402 -  -3.4  -3.62046   GGAGGTGGGCAACAA               CGTGCA GCT CGCCCG               GCAGCTCGGCTTCGA  49 424
        algW 1913736 .. 1913753 - -14.1  -4.36931   CAAGTGATACGAAAA             CGGCGCC CGAG GGCGCCG              TTTTCAATGGCAGGG 100 42
        kdsD NONE
JJQ57_RS08875 NONE
        lptC NONE
        lptA NONE
        lptB 1902044 .. 1902089 -    -9  -3.10244   GCTCTGAATAAATCA TCCGCTC-CAGGCGGCACTCGC GGTT GCGAA-ACCGCGGGCGAGCGGA ACCGCTCCGGCGAGG  60 66
JJQ57_RS08855 1900378 .. 1900388 -  -2.4  -3.16564   GTGGCAGGTTAGCAA                 CCTG CCT CCGG                 AACACCTTGGCGTGG  43 48
        raiA 1900028 .. 1900046 -  -2.3  -2.63596   GGGGAGGGGAGATCA            GC-GGGCG CCTA CGCCTTGC             TGCCGTTCGAGATAC  38 4
        ptsN NONE
        rapZ NONE
JJQ57_RS08835 1898343 .. 1898358 - -11.8  -4.54727   CGCCGGAAAGGAAAA              GCCGCC AGTT GGCGGC               TTTTTCGTTGTCGCT 100 50
JJQ57_RS08800 1892349 .. 1892369 -  -8.9  -3.53012   GCCGGCGCGGCGAAA            CCTAGCGCA GGC CGCGCTTGG            TTTCGTCCAGTTCGC  63 6
        gatC NONE
        gatA NONE
        gatB 1877761 .. 1877782 - -17.3  -3.78934   CCTGGCGGACAAGAA           GACGCCGGG CGAA CCCGGCGTC            TGGCTTTGACTCACG 100 36
JJQ57_RS08740 NONE
JJQ57_RS08735 1876752 .. 1876766 -  -8.6  -4.05714   ACGCCGAACGAGAAA               CAGGAA ACC TTCCTG               GTGCCGATGCGCAAG  72 197
JJQ57_RS08690 1863500 .. 1863531 - -18.8  -3.66139   GAGAGACAGTGGAAA      CGCAAGAGGCAGCC CGGA GGCTGCCTCTTGTG       GTGCGCGCCGGCCGG 100 42
JJQ57_RS08685 NONE
JJQ57_RS08680 1859939 .. 1859983 - -25.7  -3.50853   CCGGCCGAACGATAA CGCCGCACGCGGGAAGGCAAG GGC CAGGGCTTCCCGCGTGCGGCG CAGCGATCAGTCCAG 100 32
        psdR NONE
JJQ57_RS08665 1855972 .. 1856011 - -13.4  -3.01712   CGCGGCGGTCGAATA  CGGCGAGGCGAGCGCTCC TGGC GGAACGCGCACAGCGCCG   TTCTGGAACACGGGC  75 120
JJQ57_RS08660 NONE
JJQ57_RS08655 NONE
JJQ57_RS08650 NONE
JJQ57_RS08645 NONE
JJQ57_RS08640 NONE
JJQ57_RS08635 NONE
JJQ57_RS08625 1847407 .. 1847462 -  -3.8  -3.53012   CGCGCCTGGCGCAAA GCCCCGC-GCATAGCGAGGTAACCTTC GTC GAGAGCGACCTGGCGACGCAGCAGGCC GATCTGCTGCGCTTC  51 66
        lpxO 1843683 .. 1843713 - -16.2  -2.62396   CACCTCCCCACAGTA       GGGCGAATAACCGC AGA GCGGTTATCCGCCA       TTTCGGCGAGATATC  80 426
JJQ57_RS08595 NONE
JJQ57_RS08590 NONE
JJQ57_RS08585 1841379 .. 1841392 -  -2.4  -3.28712   TTTCTGTGCGGAGAA               CCAT TCACTC ATGG                TCGCCCCCCGCTTCA  45 16
JJQ57_RS08580 NONE
JJQ57_RS08575 NONE
JJQ57_RS08570 1837893 .. 1837908 -  -3.2  -3.15544   GCCGAGGGCCAGGAA              GATGCC GATG GGGATC               AGTGCTCGGCGCATG  44 24
JJQ57_RS08565 NONE
JJQ57_RS08560 NONE
JJQ57_RS08555 NONE
JJQ57_RS08550 NONE
JJQ57_RS08545 NONE
JJQ57_RS08540 1835688 .. 1835715 -  -3.4  -3.05384   TCCGGGGTGATTGAA        GGGGT-TGGACTG CTG CATTTCACACCCC        CAGCGCACGGAAGCC  43 17
JJQ57_RS08535 NONE
JJQ57_RS08530 NONE
JJQ57_RS08525 NONE
JJQ57_RS08520 NONE
JJQ57_RS08515 NONE
JJQ57_RS08510 NONE
JJQ57_RS08505 1833293 .. 1833310 -  -4.7   -2.6927   ACGGCTGAGACAGGA             TCGGCGC GGAG ACGCCGG              CCGGGGCGTTGCGCC  44 46
JJQ57_RS08500 NONE
JJQ57_RS08495 NONE
JJQ57_RS08490 NONE
JJQ57_RS08485 NONE
JJQ57_RS08480 NONE
JJQ57_RS08475 NONE
JJQ57_RS08470 1830394 .. 1830422 -  -6.8  -3.89346   TGTGTACCGCATAAA       GCCAGAGGTTCAA GGCA CCGAACCTCTG-C        ATTACATATGCGCCG  65 204
        terL NONE
JJQ57_RS08455 NONE
JJQ57_RS08450 NONE
JJQ57_RS08445 1824935 .. 1824988 -  -3.2  -3.56568   CAACGACTGCGGAAA CCG-TCCGGCGCCA-TCTTCTGGCCAA ACC CTGG-CACACGAATGGCGCTGGAGCGA TTTCTAACGGGGCTC  51 111
JJQ57_RS08440 1823764 .. 1823776 -  -3.3  -2.77899   GCGCCGGAGTAATGA                TGGCC ATG GGTCA                GGCTCCTTTTGCCTT  40 23
JJQ57_RS08435 NONE
JJQ57_RS08430 NONE
JJQ57_RS08425 NONE
JJQ57_RS08420 NONE
JJQ57_RS08415 NONE
JJQ57_RS08410 NONE
JJQ57_RS08405 NONE
JJQ57_RS08400 1819705 .. 1819728 -  -3.7  -3.14881   CAACTCGTTGAGGAA          GGCGGTGGC TTCCTT GCCACCGGT           CATGCCAAACATCAC  47 103
JJQ57_RS08395 NONE
JJQ57_RS08390 NONE
JJQ57_RS08385 NONE
JJQ57_RS08380 NONE
JJQ57_RS08375 NONE
JJQ57_RS08370 NONE
JJQ57_RS08365 NONE
JJQ57_RS08360 1808671 .. 1808706 -  -5.6  -3.57792   GCATGTACTCCCAAA   TTGCC-G-TGGT-GGCG CCCGT CGCCCACCATCTGGCAA   GGCGGTTCTGGCTGG  57 230
JJQ57_RS08350 NONE
JJQ57_RS08345 1807524 .. 1807537 -  -2.3  -3.43756   GACCGTAGCAAAAAG               GAGAC GTTG GTCAC                AATTATCAAAACGCT  47 40
JJQ57_RS08340 1807100 .. 1807115 - -10.4  -4.90266   CGGATGAATGAAAAA              GGCTCC CAAG GGAGCC               TTTTCGTTGCCAACT 100 159
JJQ57_RS08325 NONE
JJQ57_RS08320 1800181 .. 1800203 -  -4.1  -2.85351   GTGGGGGACACGATA          GCCT-CGTTC GATG GATCGGAGGC           GCGATCGTCGTTCGC  44 121
JJQ57_RS08315 1798339 .. 1798357 - -13.8  -4.67353   CTACGGATGGAAAAA             CGCCCCGC TCG GCGGGACG             TTTTCTTTGGCGGCG 100 42
JJQ57_RS08280 1788973 .. 1788990 - -14.1    -5.252   CAGTCGCATAAAAAA             GCCCCGC TTCG GCGGGGC              TTTTTATTGCCTGCG 100 47
        metG NONE
JJQ57_RS08245 1782230 .. 1782252 - -12.7  -3.53012   CGGTCCTGGGCGAAA           GAGCGGACC CTCCC GGTCCGCCC           GTATGCCTGGGCTCA  76 38
JJQ57_RS08240 NONE
JJQ57_RS08235 1780249 .. 1780261 -  -4.7  -4.56597   CTGTTTCTCGAAAAA                CCTGC ACG GCTGG                CGTCCCTGTTCGCCG  74 282
JJQ57_RS08230 NONE
        pldA 1774470 .. 1774480 -  -3.2  -3.02511   TCGAGCTGCTCAATA                 GGAT AAG ACCC                 ATCAAAACCCTTTTC  43 39
JJQ57_RS08220 1773297 .. 1773353 -  -4.5  -2.53876   TGGCATGGCAACCCA GTCAGTCGCA-G-G-CGCCGCCA-GGACC CAT GGTCCATGGCGGAGGCTCGTGCAAGTGCC CGCGATGTGGGTTTC  41 39
        rsxA NONE
        rsxB NONE
        rsxC NONE
JJQ57_RS08200 NONE
        rsxG NONE
JJQ57_RS08190 1767339 .. 1767350 -  -4.4  -3.07816   GCGGCATTCATTCAA                TCAC TCCG GTGA                 CGCGGACGCGCTGGC  45 6
         nth NONE
JJQ57_RS08180 1766360 .. 1766385 - -11.2  -4.56597   TGGCCGCCGGAAAAA         CGAAGCCCCGC CAATT GCGGGGCTT-G         CTTGCGGTGTGGACG  95 48
        gloA 1752317 .. 1752349 - -24.3  -3.12351   CCGCCTGAGATGGAA      CGAAGAACCCCGGCC ATG AGCCGGGGTTCTTCG      TTCCTGATTGCTGAA 100 59
        pyrC NONE
         rnt 1747991 .. 1748008 - -14.1  -4.56597   CGCGCGTTGGAAAAA             GCCCCGC TTCG GCGGGGC              TTTTTCATGGGCTCG 100 158
JJQ57_RS08095 1746832 .. 1746848 - -10.8  -5.66684   GAAGGCATAAAAAAA              CCGGGC GCCAG GCCCGG              TTCTTCTGAAAGAGG 100 56
         bfr 1746150 .. 1746175 - -15.4   -5.4505   GCGGGCAAGAAAAAA         GCGCCGACGG GGCAGG CCGCCGGCGC          TTCGTCGTGGTTCCC 100 43
JJQ57_RS08070 1738806 .. 1738841 -  -7.4  -4.33274   GCGAGAGGAGCAAAA    GGTGAGCCCCGGAGGT GCGG ATCTCCGGGGCTCGTG     CGGCACGGTGGTGCG  76 242
        argF NONE
JJQ57_RS08055 1735884 .. 1735906 - -10.5  -3.70902   CGGTCGATAGGGAAA           GGCGCCGCC GACCG AACGGCGCC           GAGGTATCAGGCCTG  74 32
        yaaA 1734997 .. 1735021 - -14.9  -2.84325   CGTGCCGAAAGAGGA          GCGGCCCGCCA GGA CGGCGGGCCGG          GGAGATCAGTCTTGC  77 31
        algD NONE
        alg8 NONE
       alg44 NONE
        algK NONE
        algE 1726994 .. 1727012 -  -3.1  -2.78679   GCGGGGGATCGAAAG             GGAAATG TCGGG CATGTCC             GGTTTCCTCGCGGGG  40 42
        algG NONE
        algX NONE
        algL 1722665 .. 1722680 - -11.8  -3.72893   GAGCGCTCGAGGAAA              GGCGGG ACGA CCCGCC               GTTTTCCTCCCCGTG  78 178
JJQ57_RS08005 1721003 .. 1721035 -  -2.6  -2.71924   CAGGGGGCGGGAAAT     GCTCTGTGTCATGGC GTGG GCCTCG-CTCAGAAC      TGGAAGTAGAGGAAT  39 19
JJQ57_RS08000 1719820 .. 1719831 -  -5.8  -3.53012   GGCCCCGTGGGTAAA                CAGC CTTG GCTG                 TGTTCGTTCAATCGT  55 33
JJQ57_RS07995 NONE
JJQ57_RS07990 1717430 .. 1717463 - -26.1  -5.40072   GTTGTCGGAAAAAAA     CAGCCCCCTGGCGGA TCGC TCCGCCAGGGGGCCG      GGTCGACGCTTCAGC 100 36
        arnB NONE
        arnC NONE
        arnA NONE
JJQ57_RS07970 NONE
        arnT NONE
JJQ57_RS07960 NONE
        arnF NONE
JJQ57_RS07950 1708172 .. 1708225 - -11.6  -2.77895   GGTAGGGCGAATAAC GCCGCAGGCGTTATCCGCCGATAC TCCGGC GAACCGGCGGATAACCGCAGCGGT TATTCGCCCCAGCGG  66 62
         cra NONE
JJQ57_RS07925 1700204 .. 1700224 -  -8.1  -3.14132   GCGCGCTTGCACGAA            CGCCTGCGC GAG GCCCTGGCG            TTGCCGCAGTGGTAC  54 230
JJQ57_RS07910 NONE
JJQ57_RS07905 1697744 .. 1697789 - -10.4  -3.83205   AGGCGGGATAGCAAA GGCCA-GGGGCACGGCGGT AGGGTGGAA AACGCCGCGCCCCGTGGTC CTGCCGTTCAGAACC  76 33
        mmsR 1692227 .. 1692240 -  -3.1  -3.63744   TCGGCCCGGAAAACA               CTGAC CGGG ATCAG                TTTGCCGACAACTGG  51 76
JJQ57_RS07880 1691797 .. 1691807 -  -4.6  -2.65815   CGGACAGGGACAGCA                 CGCC GGC AGCG                 CCTCGGCGCTGATGG  42 206
        nalD 1689699 .. 1689738 -  -2.1  -2.73364   GGTGCAGGCGAAGGA TTCGGCGGCG-GACG-TCC AGGT GGATCTTGGCGCCGGCGAA  GTCCGGGTCGCCAGC  38 85
JJQ57_RS07860 1688871 .. 1688901 -    -9  -3.28712   CGGGGTCCGGGACAA      GTCGGGACGGGCA TCCGCG TGCCCGTCC-GTC       GCTGGGGTCAGGCGC  63 33
JJQ57_RS07855 1688146 .. 1688163 -  -7.7  -3.66908   CGCTTGCAAAAGGAA             CTCGCCT GGAA AGGCGAA              ACAAGAGGCCAAGGC  62 249
JJQ57_RS07835 NONE
        glpK 1681338 .. 1681370 - -15.7  -3.01712   CGGCGCCGGGGAACA     CGCCATTCG-CCGC ATCGCG GCGGACGAATGGCG      CCAGTTCGTCACAGT  81 34
JJQ57_RS07825 1680381 .. 1680404 - -13.8  -2.59569   TTCTGAAACGAACAT          TCACGGCGCC GAAC GGCGCCGTGG           CAGGGGAAATGCCTC  71 39
        glpD 1678560 .. 1678583 - -19.6  -3.44146   CCCTTCCATAACGAA          CGAGGCCCGC AAAA GCGGGCCTCG           ACGTTTCTGGCTGGC 100 43
JJQ57_RS07815 1678056 .. 1678070 -  -4.2  -2.72379   GGAAGCCTTCAAGGA               GCCG TTGCTGG CGGC               GGTGGTGCCTTACCT  41 94
        metR 1675614 .. 1675624 -  -4.6  -3.40403   TTTCGGCCAGTACAA                 CGAC TTC GCCG                 AGGCTGGCGAGTCCT  51 318
JJQ57_RS07770 NONE
JJQ57_RS07765 1665020 .. 1665038 -  -2.4  -3.60098   AGCGGGGAGCTGAAA            CGCCTGC AGAAGA GCAG-CG             GATCGAGCATCGGTT  48 399
JJQ57_RS07745 1660966 .. 1660980 - -12.8  -2.62293   AAGCCGAAGATCAAG               CGCCGC TGA GCGGCG               ACGGGACGGTCGCCC  67 47
JJQ57_RS07730 1658655 .. 1658678 - -18.2   -4.8048   CGCGGACATGAAAAA          GCCGGAGGCA GCGA TGCCTCCGGC           TTTTTCTTGCGTGCG 100 52
JJQ57_RS07715 1656125 .. 1656154 -    -2  -2.70932   GCGGGTGGTGAACGA       GGTCGCCCCGCT GGCGGA AGGCAAGCGACC        GCTGTTCATCCTGCT  38 351
JJQ57_RS07705 NONE
JJQ57_RS07700 1653504 .. 1653530 -  -2.9  -2.62184   TGGCGCTCCAGAGCA        GGTAGG-GCCTA CGCA TGGGCGCCTCCC         TTGCGGGCGCGCGCG  39 7
JJQ57_RS07695 1652695 .. 1652726 -  -3.7  -3.53444   GCAGGGCTCCGGAAA      CCGGAGCAGGGC AAGGCCGCG GGCCT-CTCCGG      GAGGCCCGCGGGTTT  51 48
JJQ57_RS07690 1651549 .. 1651582 - -18.3  -3.64703   GGCGGGGCACGGAAA     CG-CAAAAGGGCGACC GAG GGTCGCCCTTTCGTCG     ATAGCGGTGCGGATC 100 39
JJQ57_RS07685 NONE
JJQ57_RS07680 NONE
JJQ57_RS07670 NONE
JJQ57_RS07665 1645399 .. 1645412 -  -9.5   -4.1899   GGACGCCAGGGAAAA               GGCCC AGCA GGGCC                GCTTCCTGGCGTACC  80 118
JJQ57_RS07645 1642046 .. 1642062 -  -2.1  -2.87132   GCGTGTGCTGAGAGA              GGTCGGT CAT ACGGGCC              TTCGGAAGCGGGCTT  40 144
        mutS NONE
JJQ57_RS07635 1639071 .. 1639089 - -13.1  -4.86731   CGTCGCCAAAGAAAA             GGCCCGC TGTTT GCGGGCC             TTGGCGTATCAGCGC 100 34
        gfnR 1630515 .. 1630535 -  -2.4  -3.57144   GGGTGGAGCGGGAAA            CCGCCAAG TCTAT CGCAGCGG            CGAAACGCCTTACTG  49 43
        yedE NONE
        yedF 1628993 .. 1629010 - -12.7  -4.30719   CCCTGGCACAAGAAA             GCCGACC CGAG GGTCGGC              TTTCTTGTCGTTGCA  95 52
         map 1600612 .. 1600622 -  -2.4  -4.25104   CGGCTGGCAGCAAAA                 GCCG GGC CGGA                 TCAGGCGGCCGAGGT  62 26
JJQ57_RS07450 NONE
JJQ57_RS07445 1596486 .. 1596505 - -13.6   -4.4078   GGGTGTGAACGAAAA            GGGATCGC CGCG GCGATCCC             TTTTCGTTTCTCCGC 100 48
JJQ57_RS07435 1594058 .. 1594078 - -11.8  -5.67063   CGCAGGACAAAAAAA            GCCCCGCC GGGTA GGCGAGGC            TCAGGGGGAGAACAG 100 83
JJQ57_RS07430 1593198 .. 1593220 - -10.6  -2.87564   TTACGCCTGCAGATA           CCGGGCTT CGCCTGC AAGCCCGG           CTGCCACGATTGCTG  61 326
JJQ57_RS07420 NONE
JJQ57_RS07415 NONE
        dapD 1590743 .. 1590755 -  -5.5  -3.63627   CGGTTACAGGGGAAA                GGGTA GCG CACCC                GGCGGCGCTGGCGAG  57 73
JJQ57_RS07405 NONE
JJQ57_RS07400 1589029 .. 1589081 -  -9.1  -2.75992   TCGGATCGAAGAGGA CCGCT-ACCGCGCC--CTGGCCCGGC ACCT GCCGGAGCTGCTGGCGCGCTGAGCGG GCTCAGCCGGCGGTC  57 28
        plsB 1581704 .. 1581720 -  -5.8  -3.55444   CTCTGACCCGGGAAA              CCAGCA TAGGT TGCCGG              GCCGGAACAGGGAAA  57 98
JJQ57_RS07370 1581216 .. 1581235 -   -15  -3.06796   GTGTACTGGAGGGAA            CCGCCGGT TCGC ACCGGCGG             CTTGCCGCGGTGTGC  78 42
JJQ57_RS07365 1580404 .. 1580429 - -16.1  -2.59564   GCCTGACGGGAGAAG         GGGACGGGGCG ATCG CGCCCCGTCCG          TCGACTCACCTGGCC  80 31
        mexL 1575012 .. 1575042 -  -3.1  -3.05384   GCTGGCGGGAGTGAA      TTGGACGGCGATCC GCTC GG-TCGCCGACCTG       CGCGATTGCGCGCTG  42 458
JJQ57_RS07300 1565188 .. 1565199 -  -7.2  -3.65991   AGCTGGCGAAGAGAA                CCGG TTGC CCGG                 TGGAGACCATCCGCT  61 465
JJQ57_RS07290 1562784 .. 1562801 - -12.7  -5.26316   CCAGGGCAGAAAAAA             GCCCCAC CTAA GTGGGGC              TGGAGGAGGCCAGTG 100 48
JJQ57_RS07285 1562005 .. 1562017 -  -4.7   -3.0082   AATCGACGAAAGAAG                GGCGG AAT CCGGC                TTAGTGCTGCGTATC  47 26
JJQ57_RS07280 1561142 .. 1561161 - -16.4  -4.72272   CCCGCCCATGAAAAA            GCCCCGCC GGAT GGCGGGGC             TTTTGGGCTTCCGTA 100 48
JJQ57_RS07185 1539430 .. 1539450 - -18.3  -3.28712   TCGTTCCGCGGATAA            CCGCCGCCA TCA TGGCGGCGG            CGTCGCCGAAGGGCC  93 14
JJQ57_RS07175 1536012 .. 1536033 -  -7.9  -3.98172   ATCAACACGGATAAA           GCGCCCG-CC TAT GGTCGCGCGC           TTGCTCTGCTCAAAC  68 515
JJQ57_RS07165 1534560 .. 1534575 -  -4.6  -3.25356   ATTTAAATCCATGAA              GACGGC TTAC GCCACC               ATCAAAGGTATTGAG  49 427
JJQ57_RS07145 NONE
        pilD NONE
JJQ57_RS07135 NONE
        yacG 1529511 .. 1529535 - -14.2  -3.33696   GCGTCCCTGAAGGAA          CGGGCCTGCC GGATT GGCTGGCCCG          TTGCGTTCAATGCTC  82 32
JJQ57_RS07105 NONE
JJQ57_RS07100 NONE
JJQ57_RS07095 NONE
JJQ57_RS07090 1524803 .. 1524829 -  -8.7  -3.33696   TTGCTGTTGAAGGAA        CGCCCCG-C-GCC GAC GGCAAACGGGGCG        CAATGGCTCAGTGCA  60 33
JJQ57_RS07080 1521528 .. 1521540 -  -3.3  -2.57344   GAGCTTGCTCAGAAG                TAGCG GGT CGCTT                GCAGCCACAGCCGGG  39 6
       tpsA4 1516950 .. 1516969 - -13.6  -4.88228   ATTCAAGACGAAAAA            GCCCACCT GCAA AGGTGGGC             TTTTTCGTTTCTGTG 100 221
JJQ57_RS07070 NONE
JJQ57_RS07065 1515196 .. 1515209 -  -5.9  -2.62983   TGGAGGTTCATATGA               GGCCC TCCG GAGCC                GATTGCAGAGCGTCT  46 4
JJQ57_RS07060 1514650 .. 1514679 - -12.1  -3.29511   CGGATGGGTCCAGAA       GCCGAACTGGTCG CGCT CGACCAGGTGGGC        TTGAATCATAGGCTT  72 40
JJQ57_RS07050 NONE
JJQ57_RS07045 1512835 .. 1512863 -    -3  -2.87931   GCGATGTTCGAGAGA        GCAGAGCGAGTC ATCGG GAACCTCCCTGC        TCGAGCGCGCCTTGA  42 7
JJQ57_RS07040 NONE
JJQ57_RS07035 1511932 .. 1511942 -  -3.2  -3.23447   GTAAGTTCCAGAACA                 CTCA CTT CGAG                 TCCTCCCGGCTGATC  44 16
        dnaB 1510544 .. 1510570 -  -8.7  -2.83164   TCACGCATGACTAGA        CTCCTTGCCGGC TCCC GCCGGCGAG-AG         ATCGGAAGTTCAATG  55 48
JJQ57_RS07020 1508388 .. 1508426 - -14.1  -2.56715   AGCCGTATGAACGCA  CACTCTCCCGCCTA-ATC GAGC GATATAGGCAGGAGAATG   GTTTGGAAAAGGAGC  71 164
JJQ57_RS07015 NONE
JJQ57_RS07010 NONE
JJQ57_RS07005 NONE
JJQ57_RS07000 1506715 .. 1506728 -  -2.3  -3.90112   GCGCCGCGAAGGAAA               CTACG CATT CGTGG                TCTCCTCGCTGTTGA  54 12
JJQ57_RS06995 1506498 .. 1506511 -  -3.1   -3.5812   TAGGCATCAGAAAGA               CTCCTG GTT CAGG-G               AACTCTGCCTGTCGG  51 3
        yejK NONE
JJQ57_RS06985 NONE
JJQ57_RS06980 1503453 .. 1503468 -  -3.2  -3.18264   CGCTTCATTGATCAA              CGACTT CGAC ATGTCG               ATCTCTCCCCAAATC  44 49
JJQ57_RS06975 NONE
JJQ57_RS06970 1500921 .. 1500963 -  -9.8  -2.52464   CCGGCGCCGAAGTCA GTTCCTAGTGGAGTGGTTCC AGT GGAACCACCCAACTCGCCAC CGGCGCGGAGGTCGG  59 443
JJQ57_RS06965 NONE
JJQ57_RS06960 NONE
JJQ57_RS06955 1497555 .. 1497572 -  -9.9  -3.01712   TCCCGTGCGGGAACA             CTCCTCA AAAT TGAGGAG              TGCAAAATCCTCGGG  62 256
JJQ57_RS06945 1496485 .. 1496510 -    -4  -3.01712   TGCGGGCGGCGAAGA         GTGATGCTTGC CACCC GCA-GCTTCAC         GAATGGGCGGCCAAA  45 55
JJQ57_RS06940 NONE
JJQ57_RS06935 1495806 .. 1495822 -  -2.2  -2.62656   AAAGGCAGGGACAAT              CAGAAG TCGAG CTGCTG              TTGCTGCTCCTGAGC  38 8
        topA NONE
JJQ57_RS06925 1492891 .. 1492931 - -13.4  -3.09831   CTGACCTCAAAAGGA GCCCCCGACAGGCCTGT GTGCGGGA ACAGGG-TGTCGGGGGC  GGGGAACACGCCGGG  75 104
JJQ57_RS06920 NONE
JJQ57_RS06915 NONE
JJQ57_RS06910 1487948 .. 1487960 -  -4.7   -4.1399   CCAGGGATATAGAAA                TGGCG AAA CGCCT                GGCAAATGAGTGGAG  65 408
JJQ57_RS06895 NONE
JJQ57_RS06890 NONE
       pilO2 NONE
        pilP NONE
        tadA NONE
JJQ57_RS06870 NONE
JJQ57_RS06865 NONE
        tadA NONE
        pilV NONE
        pilM 1476412 .. 1476466 - -33.2   -2.8474   CGGCAGGGAGAAGGA TCCCGATGGGTAGCCTGATGCCCCTG GAG CAGGAGCATCAGGCTACCCATGGAGA GGGGAAAAGGAGGGG 100 361
JJQ57_RS06845 1475261 .. 1475295 - -13.7  -4.56597   GTTTTCCTCGAAAAA    TGCCGGAAAACCACCC TGCG GGATGGTT-CCCGGCA     GGGTTGGGGGTGGTA 100 51
JJQ57_RS06840 1474904 .. 1474922 - -11.7   -4.8622   CCCGCGAATGAAAAA             GCCCCTC ACACG GAGGGGC             TTGAGGTCAGTGCGG 100 168
JJQ57_RS06835 1474079 .. 1474097 - -11.7   -3.6682   GCGTAGGTAGTGAAA             GGCCCTC GGGAT GAGGGCC             GGTATTCGATCAAGC  75 46
JJQ57_RS06830 1473773 .. 1473795 -  -9.8  -3.72576   CCTTTCGGTAGGAAA           CACCAGTCCC AAG GGGACTGAGG           TCCCCTAAATGGGAA  74 52
JJQ57_RS06825 1473424 .. 1473439 - -11.8  -2.61274   TCCAGGGGAAGTAAG              GGGCGC CGAA GCGCCC               TGGTGATGTAGAGTC  65 137
JJQ57_RS06820 1472427 .. 1472458 -  -7.2  -3.02263   AGAGGTCTCCGAATA      CGCAGGCCTC-TCCC GCG GGGATGAGGTCCCCG      CGTGGGTGGGTAGGA  54 213
JJQ57_RS06815 1472024 .. 1472045 - -10.1  -3.08508   GACCTGCGAAAAGGA           TGATCCCGC CGAA GCGGGATCG            TGGTGAGGGGAGAAC  62 40
JJQ57_RS06810 NONE
JJQ57_RS06805 NONE
JJQ57_RS06800 1470623 .. 1470644 - -15.1  -2.62184   CCTGGTGGTAGACGA           GGAGCGCCC TCGA GGGCGCCCC            TCAAGGGAAGTGGTT  77 48
JJQ57_RS06795 1470265 .. 1470299 - -12.7  -2.71263   AACCTCCTTGAAGGA     GGAGCCACGCCGCCC TCGAG GGGCGGTGAAGCCCC     TCGGGGGTGTAGTCC  68 65
JJQ57_RS06790 1469602 .. 1469620 -  -4.4  -3.03159   CCAAGCGCGGGAACA             TGAGGGCC ATG GGGCCTCC             TTGAGTCTGAGAGGG  45 46
JJQ57_RS06785 1468090 .. 1468130 -  -6.3  -4.32951   AGGTGAAGGAAGAAA GCAGGGCATGCACG-T-CCC TTTC GGGTATCGC-CATACCCTGC AGGGTGGAGTGGAAG  73 61
JJQ57_RS06780 1465787 .. 1465804 - -12.7  -5.71712   GCTGATATAAAAAAA             GGCCACC CGAA GGTGGCC              TATGAGTTCATGCTG 100 33
JJQ57_RS06765 NONE
JJQ57_RS06760 1462722 .. 1462733 -  -2.2  -2.78463   AGGGCGCGGATTACA                GACG TTGC CATC                 GGCCGTTCACCTCCT  39 9
JJQ57_RS06755 NONE
JJQ57_RS06750 1461571 .. 1461585 -  -4.2  -3.15861   GATCAGGCCGAGCAA               CTCCTG GTA CATGAG               TTGGCGTGCCTGAGC  47 94
JJQ57_RS06745 NONE
        traD NONE
JJQ57_RS06735 NONE
JJQ57_RS06730 NONE
JJQ57_RS06725 1456020 .. 1456032 -  -2.7  -2.70525   TCCGTCGAAATCAAG                GATAA GCT TCATC                TCAATGCTCCGCTGT  39 156
JJQ57_RS06720 1454810 .. 1454821 -  -4.4  -3.41134   ATACGGACCAAGGAA                TGGT TGGT ACCA                 GAAGCTTAGGTTTGT  51 126
JJQ57_RS06710 1454068 .. 1454078 -  -2.4  -3.67877   ATTCCGCAAGAAATA                 CTCG GCG CGGG                 TCCGGGGTATTTTTT  49 40
JJQ57_RS06705 NONE
JJQ57_RS06700 NONE
JJQ57_RS06695 NONE
JJQ57_RS06690 NONE
JJQ57_RS06685 NONE
JJQ57_RS06680 NONE
JJQ57_RS06675 NONE
JJQ57_RS06670 NONE
JJQ57_RS06665 NONE
JJQ57_RS06660 NONE
JJQ57_RS06655 1445163 .. 1445181 -  -8.8  -2.52464   CCGGCCGGCAATGGA             GTTGAGGC TTA GCCTCACC             AGCTCCGGCCGCAAG  51 172
JJQ57_RS06645 NONE
JJQ57_RS06640 NONE
JJQ57_RS06635 NONE
JJQ57_RS06630 NONE
JJQ57_RS06625 NONE
JJQ57_RS06615 NONE
JJQ57_RS06610 1438645 .. 1438657 -  -6.3  -3.16742   GGCAACGCTGACCAA                TATCC CCT GGATA                TTTGCCTATATGGCT  53 446
JJQ57_RS06595 1436283 .. 1436298 -  -4.7  -3.65353   GGAAAGGAGTTGAAA              CATGG GAGGCT CCATG               ACGATTCATGGAGCG  55 172
JJQ57_RS06590 1434357 .. 1434373 -  -3.6  -3.17075   CCTCGGTCAATTGAA              GTGGGG TCATT CCACAC              CCCCTTCGGCATCGG  44 15
JJQ57_RS06585 1432842 .. 1432861 -  -9.2  -3.15503   TGTCAATATGGAATA            GCCCGCCT ATTT AGGTGGGC             TTTTCTGTTTCTAAG  61 229
JJQ57_RS06550 1426630 .. 1426653 - -14.6  -4.56597   GGCGGCGGGCAAAAA          GAAGGGAGGC CTGC GCCTCCCTCC           GGTGTTTCGTGCGAT 100 40
JJQ57_RS06545 NONE
JJQ57_RS06540 NONE
JJQ57_RS06535 1423303 .. 1423322 - -13.6  -4.68645   GAGCGAAAACCAAAA            GGCCTGTC TTCG GACAGGCC             TTTTCACTTTCAGTC 100 35
JJQ57_RS06525 1421475 .. 1421491 -  -3.6  -2.72511   TCTACGCCTGGAAAG              CATGCC AAACG GGCCTG              GGAGCGTCTTGCGGT  40 82
JJQ57_RS06520 NONE
        pilV NONE
        pilW NONE
        pilX NONE
       pilY1 NONE
       pilY2 NONE
        pilE 1414679 .. 1414701 - -17.8  -4.63218   CCGTGCGCAATAAAA           GAGCCCCTCT CGT AGAGGGGCTC           TTTCGTTTCAGCGCC 100 33
        rpsT 1406671 .. 1406685 - -12.8   -5.4505   GTGGGCAATAAAAAA               CCGGCC ATT GGCCGG               TTTTTTATTCGAGCA 100 50
JJQ57_RS06425 1401771 .. 1401792 - -17.3  -4.67038   GTCGCAAAACGAAAA           CGCCGCCGT GAAA ACGGCGGCG            TTCGTCACAAGTCGA 100 48
JJQ57_RS06420 1401332 .. 1401363 - -16.7  -2.69042   ACATGAGGAAAGTGA      CTCCGGGAAGGTC GTCCGT GACCTTCCCGGAA       CCGGCCGGAGGCGCC  81 115
JJQ57_RS06415 1399042 .. 1399067 - -20.5  -3.72241   CAGGAAGGAGTGAAA         CGCCCCGTCGA CGCA TCGACGGGGCG          TTTTTCATTGCGGCA 100 41
JJQ57_RS06380 1392961 .. 1392988 - -12.6  -3.53761   TAATGCTTGGGGAAA        GGGGCCTGCCCG CGAA CGGGCAGGCGGC         GAGGCTCAGGCCTGC  76 31
JJQ57_RS06375 1390646 .. 1390656 -  -6.8  -3.03338   ACAAGGTCGGCAAGA                 GCTG TTT CAGC                 CAGTGGTACGAGGCT  51 448
JJQ57_RS06360 NONE
JJQ57_RS06355 NONE
JJQ57_RS06350 NONE
JJQ57_RS06345 NONE
JJQ57_RS06340 NONE
JJQ57_RS06335 1383413 .. 1383433 -    -9  -3.15544   CTTGACGTGGATCAA           GC-GCACCG GGAT CGGTGCTGC            GGATGGTTGTCGCAG  61 47
JJQ57_RS06330 1382254 .. 1382274 - -18.3  -5.60864   CATAGAGGAAAAAAA            CGGGGCTCC AGG GGAGCCCCG            TTTTTCCTTGTGGCG 100 42
JJQ57_RS06285 NONE
        escR 1369769 .. 1369781 -  -4.7  -3.65812   GCGTCGCGAAGAGAA                GGCCC TGC GCGCC                CTGGCGAACAGCAGC  55 307
        nfxB 1363497 .. 1363509 -  -4.7  -2.78596   CATGCGGCGACGAGA                GGGGC GCC GCCGC                GGGCGCAAGGGTCAG  44 37
        morA 1359002 .. 1359021 - -12.1  -3.29144   TCATGTCGCGGACAA            GCGGCGC TCAAGC GCGCCGC             ACGGCGGCTCAGCCC  72 34
JJQ57_RS06250 1357615 .. 1357632 - -14.1  -5.01811   GGAGGAAATGAAAAA             GCCCGGC ATTT GCCGGGC              TCTTTCGTCTTGCCT 100 47
        mapZ 1352092 .. 1352118 -  -5.7  -3.54459   TCAAGGTGCTGGAAA         CCGCCTCCGAC CTGGC GTTGATGGCGG         CGGTGATGTCCAGCC  54 274
JJQ57_RS06210 1350420 .. 1350436 - -15.1  -4.74801   CAACGGTATGAAAAA              GGGCGCC TCC GGCGCCC              TTTTTCATGTGGGCA 100 44
        mscL 1345496 .. 1345511 - -11.8   -4.8622   TCCGGCAATGAAAAA              GGGCCC GTTC GGGCCC               TTTTTCATTGTTCCG 100 50
JJQ57_RS06170 1341805 .. 1341817 - -10.5  -3.13403   CGGCGGCGAGGAACA                GCCCG GCC CGGGC                CATCGCCGTCCTGCT  62 306
JJQ57_RS06140 1334285 .. 1334303 - -13.1    -4.386   CAAGGTGCGAGAAAA             GCCCGGC TCGAT GCCGGGC             TTTCTTATTGCCGAG  95 134
JJQ57_RS06120 NONE
JJQ57_RS06115 NONE
JJQ57_RS06110 1323469 .. 1323518 - -20.9  -2.77899   CGGGTCGACCAATCA CCATGACACGCGCCATCTG-CCCG CCC CGGGTCAGATCGTGCGTGTCATAG GTCTTGTCAAACCCT  91 297
JJQ57_RS06105 NONE
JJQ57_RS06100 1322003 .. 1322042 - -16.4  -3.62591   GGCACAACCTGGAAA  TGGCCGACCTGACCCGGCG TAT CGCCGAG-CTGCTCGGCCA  GCCTGCGCCGCAGCC  88 282
JJQ57_RS06085 1317964 .. 1317998 -  -9.1  -3.64049   TCAACAAGCCTGAAA     CCGACGGGCCGGAGT GCCTG ACCCCGGCCTGACGC     TAGACCCTGAACTGA  68 25
JJQ57_RS06075 1316175 .. 1316205 -  -5.9  -3.28924   GATCCTCGCCTACAA       CGCCGCCGCCCCG CTGGC CGAGGAGCCGCCG       GAGCCCTGCGGCCCC  53 71
JJQ57_RS06060 1314511 .. 1314527 - -15.1  -3.35679   TTGCCCGATGGAGAA              GCCCGGC GGC GCCGGGC              TTTCGTCTTCAGGAT  84 34
         mqo 1310625 .. 1310640 - -11.8  -5.04601   TCCACAAATGAAAAA              GCCGCC CGAA GGCGGC               TTGTTCCGTCGCGCG 100 43
JJQ57_RS06005 1305862 .. 1305889 - -13.5  -3.01924   GAGGCGGGTGGAATA        CGGACGGAACA GCGAAG TGTTCCGCCCG         TTGGTTTCAGTGCGA  75 32
JJQ57_RS06000 NONE
JJQ57_RS05995 1304427 .. 1304454 -  -3.5  -2.67705   GGAGAAGCGACAGGA        GTAGATGCCG GCTGGACAT CGGCATC-AC        CAGCTGATGGTCACG  39 22
JJQ57_RS05990 NONE
JJQ57_RS05985 NONE
JJQ57_RS05980 NONE
JJQ57_RS05975 1299380 .. 1299392 -  -6.2  -3.28712   CCCGCTGCTGGACAA                CGCC AGTTG GGCG                GCGGCGCTGATGGCG  53 399
JJQ57_RS05955 NONE
JJQ57_RS05950 NONE
JJQ57_RS05945 NONE
        phrB 1291226 .. 1291242 - -10.8  -5.02074   GCACGGTCGAAAAAA              GCCGGG TTCAT CCCGGC              TTTTTCATGCCTGCG 100 116
        lbcA NONE
        lolB NONE
        ispE NONE
JJQ57_RS05890 1282316 .. 1282326 -  -2.4   -2.5564   CAGAAGAGGAAAATG                 GCAG GGG CGGC                 TGGATTCGAACCAAC  38 13
JJQ57_RS05885 1281217 .. 1281261 - -12.4  -4.59773   GTGTATCTCCAAAAA TAACAATGCGCCCGAACGCTTG CGA CCAGCGTTCGGGCG-ATT-TCA AAGGCCCCGCCGGAG 100 81
JJQ57_RS05880 1280569 .. 1280597 -  -2.4  -4.82901   CCCTCTCTATAAAAA       GGCGATCGAGTAA TGAA TTACTCGG-CGGC        GCCTTCTTCGCTACC  74 14
         pth NONE
        ychF 1278772 .. 1278785 -  -8.1  -3.14881   CAACCTGTCCACCAA               GCGCT ACTG AGCGC                CACCGAGATCCAGCA  58 59
JJQ57_RS05865 1277332 .. 1277359 -  -9.1   -3.4285   GCACTCAAGGGACAA        CGGCCCTATCC AGAAAA GGAAAAGGCCG         CTCCTGTCCATTCGT  65 66
JJQ57_RS05860 NONE
JJQ57_RS05855 1270682 .. 1270694 -  -4.8  -3.30124   CTTTATTCCTTAGAA                CCGA ACACA TCGG                CGTGCGCGGCGAATT  50 0
JJQ57_RS05850 1267484 .. 1267499 -  -6.8  -2.53759   AAGACGGGCAAGGTA              CCAGCC ATGA GGCTGA               CCGGGTAACGCAGTT  48 399
JJQ57_RS05835 1260934 .. 1260948 -  -7.2  -3.86897   CTCACCTTTTACAAA               TCTCTT TTT AAGAGA               CGATCGGCAGCTGGC  68 4
JJQ57_RS05830 NONE
JJQ57_RS05825 1258011 .. 1258043 -  -6.1   -3.3568   ACAACGACAGAGCAA      CGCGAGGCGCTCCAC GCA GCACACCGCCTGGCG      GGCACAGGATCACTG  55 363
JJQ57_RS05810 1255161 .. 1255182 - -14.5  -5.50723   CGACCAAAACAAAAA           GGGGTTAGC TTGC GCTAACCCC            TTGAAAAATATGGTG 100 36
JJQ57_RS05795 1251683 .. 1251704 -  -7.2  -3.30441   CAGCATCGTCCAGAA           CGCCTGGC ACCGCG GCCAGTCG            CTGTCCGTGCATGGC  54 222
JJQ57_RS05750 NONE
JJQ57_RS05745 NONE
JJQ57_RS05740 1239685 .. 1239714 - -15.8  -4.13767   GGGCCTATCGGAAAA       GTCCACGGCCCTG TTAGG CAGGGCCGTGG-C       AGACGCTTCACGCCG 100 33
JJQ57_RS05735 1238547 .. 1238605 -  -6.6  -3.43217   CAGGAACAGCCAGAA TG-GCGTTCGCCGGCGCGA-GCCCGTGCG CAGG CGCACGGGCGTGGAGGCGGCGC-CGATCA ATTCAGGCCAACGTC  57 23
JJQ57_RS05730 1236982 .. 1237005 - -16.8  -4.86385   ATCGGCAAAAAGAAA          CGCCGCTTAC CTGG GTAAGCGGCG           TTTTCGTTCATGCAT 100 64
JJQ57_RS05650 1220477 .. 1220505 - -17.6  -3.72695   AGCTTCGGCAGTAAA        GAAAAACCCGGC TACAG GCCGGGTTTTTC        TTTGCTTCAAGCAAG 100 89
JJQ57_RS05630 1215186 .. 1215234 - -18.9  -3.54475   GCCGTGAGTATAGAA GAGCAGCGGCACGGCGCCCGCCC TGGAG GGGCGGGCGCCGTG--GCAGTTC GTTCAGAGACCGGGC 100 28
JJQ57_RS05625 NONE
JJQ57_RS05620 1214237 .. 1214249 -  -5.5   -3.1994   GAGAGGAGGTACGAA                CGTCC ACG AGACG                ATAGGTGGGCGCCCG  51 76
        cbpA 1213200 .. 1213220 - -16.9  -5.47218   TCGCAGGCAAAAAAA            GACCCGGCA AAG TGCCGGGTC            AAAAACCGTGATTAG 100 202
        phuR 1205732 .. 1205752 - -16.1  -3.64703   CCTGTGGCATGGAAA            GCGCCCGGC ATG GCCAGGCGC            TGGGTATGGGGGCAC  91 65
JJQ57_RS05580 NONE
JJQ57_RS05575 1204264 .. 1204278 -  -4.2  -2.52464   CCGGTGTCGAACTGA               CCGCTG GGG CAACAG               GCCCGAGGAGAAAGG  41 496
JJQ57_RS05565 1203566 .. 1203591 - -17.7  -4.93365   TGCTACAAGGAAAAA         CGCCGTTTTCC CTGG GGAAAACGGCG          TTTTCGTTAGCGTCC 100 32
JJQ57_RS05540 NONE
        trmA 1197350 .. 1197361 -  -7.2  -3.72576   TGGGCTTCGACGAAA                CCGC CGTG GCGG                 CCTTTCCCGACGCGG  61 322
        dksA 1195076 .. 1195095 - -16.4  -4.06055   ACGGCGGAAACGAAA            CGGGGCGC CTTG GCGCCCCG             TCGGTCCGGCTCAGG 100 36
      gluQRS NONE
JJQ57_RS05510 NONE
JJQ57_RS05505 NONE
        cbrB 1190338 .. 1190364 - -10.9    -5.626   GAGGGCACAAAAAAA        CCGGGTTC-CCG TTAC CGATGAACCCGG         TTTCTGTTACGCGGC 100 68
JJQ57_RS05495 NONE
        folK 1187579 .. 1187606 - -11.2  -3.06315   GTAACAGTGTGAAGA        GCCCGCCGCGAGG TAT CCGCGCAGCGG-C        GGGCAGGCAGGGTCA  66 38
        panB NONE
JJQ57_RS05480 NONE
JJQ57_RS05475 1185210 .. 1185227 -  -9.8  -4.87626   TTTGAACATGAAAAA             GCCCGG ATGAAA CCGGGC              TTTATCCAGAGGGGC 100 45
         pgi 1183459 .. 1183477 - -17.4  -4.88407   GGACGGAATGAAAAA             GCCCGGCC TAG GGCCGGGC             TTTGGGGAGAGGCGG 100 42
         acs 1181319 .. 1181358 - -15.1  -2.87344   CAGGCGCCGGAGAGA CTGGAACCGTCCCG-CGCC GCAG GGCGGCGGGACGGTTGC-G  CGGGTCAGCGGTTGA  79 30
JJQ57_RS05460 NONE
JJQ57_RS05455 NONE
JJQ57_RS05450 NONE
JJQ57_RS05445 1176337 .. 1176362 - -23.3  -4.10791   AACAGGTAGAAAGAA         GCCCCGCCGGG ATTG CCCGGCGGGGC          TTTTTCATGGGCGCT 100 45
        yhbY 1159864 .. 1159883 - -13.6  -2.71263   AAGGCGTCTGAACCA            GGTCGGGA AGTT TCCCGACC             TTGGTTGGATGGGGC  72 42
        recN 1147182 .. 1147201 -   -15  -4.13767   GGTTCCATGCGAAAA            CGGCGACC CTGG GGTCGCCG             TTTTCATTTTCCATT 100 51
JJQ57_RS05295 1146086 .. 1146103 - -14.1  -4.98531   TGCGGAAATGAAAAA             GCCCGGC GAAT GCCGGGC              TTTTTCGTGGAACGC 100 47
        smpB 1144512 .. 1144524 -  -9.1  -3.21099   GGCGCGCAGGATGAA                GCGCT CGC AGCGC                CGGCGCAGCGTGCAG  61 72
JJQ57_RS05270 1141672 .. 1141720 -  -8.8  -3.56643   GGGACACGGCGGAAA TGGCC-AAGGGAGCCGGGCCTAC GATC GTAGGCGAGTCTCCCCCAGACCA TTTCCTGCGCAGTAT  65 69
        lldD NONE
JJQ57_RS05260 1137510 .. 1137522 - -10.5  -3.04461   GACGTAGGGCGAATA                GCGCC AGC GGCGC                TATTCGCCGCTTCTG  62 83
        speD NONE
JJQ57_RS05250 NONE
JJQ57_RS05245 NONE
        pmrA NONE
        pmrB NONE
        cueR 1132027 .. 1132044 -  -9.1  -2.76696   TGGTCGGTGAAGAAC             CAGGCGC GCAT GCACCTG              CGCAACGGCGACCGG  55 264
JJQ57_RS05195 1126581 .. 1126591 -  -8.2  -3.40403   CGCTGCGGAGGATAA                 CGCC GTT GGCG                 TTATGCGCCCTACGG  63 105
JJQ57_RS05185 1123399 .. 1123409 -  -8.2  -3.49475   TGCAGGGCCAGATAA                 CGCC GTT GGCG                 TTATCCGCCCTACCG  63 76
JJQ57_RS05175 1121177 .. 1121215 - -13.1  -2.70932   CGGTGGCGGTAAGCA   GCCGCATAGCTTCGGGC TTTGC GCCCGAAGCTTCAAGGC   ATGGCGGACCGGCGT  68 40
JJQ57_RS05170 NONE
JJQ57_RS05165 NONE
JJQ57_RS05160 1119076 .. 1119088 -  -6.9  -3.59262   CGCGACAGTTCGAAA                GCCGC GAT GCGAC                GCGCAACCGCCTGGT  58 347
JJQ57_RS05150 NONE
JJQ57_RS05145 NONE
JJQ57_RS05140 NONE
JJQ57_RS05135 1116426 .. 1116436 -  -8.2  -3.63515   GGGTAGGGCGAATAA                 CGCC AGC GGCG                 TTATCCGCCCTCCGC  65 70
JJQ57_RS05130 1115270 .. 1115300 -  -6.6  -2.91274   CCGACGGCAACTACA       GCGCCGTCCGCGAG TTG CTCTGGGGCCGCGC       CACCCATGTGGTATG  48 361
JJQ57_RS05110 1112435 .. 1112454 -  -3.6  -4.25104   CCGTCTCGAGGAAAA            CCTCTT GCAAATCA AAGAGG             AAGGCAATCACGCCC  65 160
JJQ57_RS05085 1107483 .. 1107514 -  -6.4  -3.21099   CTGCGCCAGGACGAA      GCCGCCATGCGCAA CCTG CTGCGCAAGCTGGC       GCGCCTGGGCCAGTT  51 303
JJQ57_RS05045 1094864 .. 1094882 -    -3  -4.30576   GGCGGAGGAGGAAAA             CGCGAGAC CCC ATCGCACG             CCCTCGGATTCCGCC  64 104
JJQ57_RS05040 1094141 .. 1094155 -  -2.8  -4.12198   GAGAATGCGGGAAAA               GGACAT ACG ATCTCC               TCTGCAGCCTTGTCC  61 173
JJQ57_RS05035 NONE
JJQ57_RS05030 1092165 .. 1092202 -  -5.4  -3.40403   GCGCGCCGAGCAGAA   GTCCACCGCCG-CGCTG CTGGC CAGCGACGCCGGCTGGC   GCGAGCGGCCGCTGG  53 264
JJQ57_RS05010 1087942 .. 1087982 -  -6.8  -3.35996   CAGTGGCAGCGACAA CGCCCT-GCGCGAGTATGGC GAG GCCGTCCTCG-GCGAGGCCG CGCCGGACCTGGTGC  56 117
JJQ57_RS04970 1079481 .. 1079507 -  -5.6  -3.30124   CGGCATGCTGGAGAA         CCAGGGACAGCG CAG CGCGGCGCCGGG         CGTCTGGGTGATCGG  51 511
JJQ57_RS04960 1077829 .. 1077846 -  -2.7  -2.53015   ATACCTTGGAATGCA             GGTCGTCA TCT TAACG-CC             TGGCGGCCTTCCCTG  37 53
JJQ57_RS04955 1076734 .. 1076772 -  -5.9  -3.14132   CGGCGTGGCGATGAA  CGGTCCG-CTGGCCGATG CCGA CATGGACCGGGCGGAGCG   GATGATCGCCCTCAA  51 499
JJQ57_RS04945 1075544 .. 1075554 -  -2.4  -3.71848   GTCGCGGACGAAGAA                 GGGC TGA GCCT                 CCGGCGCGACCGGCT  52 67
JJQ57_RS04920 1068960 .. 1068990 -   -24  -3.13908   AAGCGAACCAGGCAA       TGGCCGGCTGGCGC GAG GCGCCCGCCGGCCA       TTTCGTTTCAGATCC 100 208
JJQ57_RS04895 NONE
JJQ57_RS04890 1060424 .. 1060464 -  -9.7  -3.65313   GAATGATAGCGGAAA GCCGGGCCCGATCGAGCC CCGTGC GGCT-GATCAGGTCCTGC  CCCGGTTCCGCTGAG  68 104
JJQ57_RS04885 1058497 .. 1058517 -    -4  -3.56643   TGTACAGGCTGCAAA           CGGCA-AGC GGGC ACTATGCCG            GAATTTCCGTATGAC  53 116
        aroQ NONE
JJQ57_RS04875 1057509 .. 1057525 -  -5.7  -3.02144   GCACTTTTTCCAACA              TCGCAGG TTC CCCGCGG              CTTAGACGATGGTGA  49 27
        accC 1056113 .. 1056145 - -16.4  -3.57144   GCCGGCAGGCGGAAA     CG-ACAAGGGCCGCC CGGA GGCAGCCCTTGTGCG      CAGCGACTGACGGAT  91 40
JJQ57_RS04865 1055134 .. 1055155 - -15.1  -4.05788   CGGCTGTAAACGAAA           CGGGCCGCC CAGG GGCGACCCG            TTTTCCACCGCGCAA  95 53
        prmA 1054222 .. 1054240 -  -2.3  -3.14132   GCGGCGCGCCATCAA            TCGG-CGC GGCG GCGGCCGC             TGATGCGGATCCAGC  43 3
JJQ57_RS04855 1052678 .. 1052698 -  -3.1  -5.00616   GGTGCTGCGAAAAAA            GGGAGGGCA TGA TACCCGCTC            TGGATGACCGGATAA  78 175
        dusB NONE
         fis NONE
        purH 1049652 .. 1049663 -  -5.8   -3.5774   ACTCAATGGCGGAAA                TGGC GCAT GCCA                 GTGAACACCATCGCG  57 1
        purD 1048179 .. 1048194 -  -4.6  -2.78715   AATGGCCGGATTATA              GCCAAG TGGC CGTGGC               AACGGCATAGGCCGC  44 77
        retS 1045196 .. 1045206 -  -8.2  -3.28712   GGTGTCGGCGGATAA                 CGCC GTT GGCG                 TCATGCGCCCTACGG  60 133
JJQ57_RS04825 1044020 .. 1044035 -    -6  -4.07687   ATCGGTCGGCGAAAA              GGCGCC GCGA GTCGCC               GGGGAAGCATGCCAA  65 255
        urtA NONE
        urtB NONE
        urtC NONE
        urtD NONE
        urtE NONE
JJQ57_RS04795 NONE
JJQ57_RS04790 NONE
JJQ57_RS04785 NONE
JJQ57_RS04780 NONE
JJQ57_RS04775 NONE
        ureC 1033721 .. 1033757 -  -8.6  -2.52543   AGCTGTCCGAACGGA   GCGGTCGACGTCCCGGCG TGG CGCCGGGCC-CCGTC-GC   GTGGGAATCAGAACA  53 33
JJQ57_RS04765 1032044 .. 1032059 -  -4.7  -3.13403   TGCGGTGCAGGAACA              GATCG ACAGCA CGATC               GAGGATGCCATCGCT  47 245
JJQ57_RS04755 1031195 .. 1031212 -  -8.4  -3.02471   GGCCGAGGAGAGAGA             GCGCGT TACCCT ACGCGC              TGGTGGCGGCGCCAG  57 76
JJQ57_RS04750 1030028 .. 1030044 -  -5.8  -3.14344   CATTGCCCGGACCAA              CGCCGA ACTGA TCGACG              TCGATGCGGTGATCC  49 397
JJQ57_RS04740 1027936 .. 1027946 -  -8.2  -3.28712   TGTGGCGGCGGATAA                 CGCC TGT GGCG                 TTATCCGCCCTGCGG  60 152
JJQ57_RS04730 NONE
        osmE 1026317 .. 1026348 - -23.8  -2.52464   CCGGGCCTGAACGCA      GACGCCCCGCCTCC GTAA GGAAGCGGGGCGTC       GAGCCGTCAGGGGCG 100 32
        brlR 1024880 .. 1024913 -  -8.1  -3.46848   CAAAAGCGACGACAA     CCAGTGCACCGCGCTG CTG CAGCGCA-TGCGCTTG     CCAGCCAAGGTGCCG  59 57
JJQ57_RS04705 1022000 .. 1022020 - -15.4  -5.10163   AAGGCGAAAAGAAAA            GCCGGCGC TGCGG GCGCCGGC            TCTCGGACGGGTCTT 100 50
JJQ57_RS04700 1021372 .. 1021404 -   -12  -4.15006   ACAGGGATGGGAAAA      TAGGAAAGCCCGGC ATCGA GCCGGGCTTTTCTC      GCGCCTTGCGGCGTA  86 49
JJQ57_RS04670 NONE
JJQ57_RS04665 1015384 .. 1015403 -  -7.8  -3.86015   GACGCCGGCGAGAAA            CCCGCTCA GTCC TGAGCCGG             GAACGCCAGGTCGAA  68 11
        desT 1010676 .. 1010700 -  -2.7  -3.90843   AAGGAATCACAACAA          GCACCAGCAAG GGC CTTGCCAGGTC          GATGCGGGACGCCTG  54 190
        ureE NONE
JJQ57_RS04635 NONE
        ureG NONE
JJQ57_RS04625 1008028 .. 1008040 -  -9.1  -2.78384   TGGTGGCCGACGACA                TGCCG CTG CGGCA                GTGGGCGGGAGAACT  55 222
JJQ57_RS04610 1003315 .. 1003329 -  -5.6  -2.70932   CGTGCGCCTCAACCA               CGCCAG CAA CCGACG               CAGCTTCAACAGCGA  45 231
JJQ57_RS04585 NONE
JJQ57_RS04575 NONE
JJQ57_RS04570  992742 ..  992766 - -12.1  -3.01791   ATCCGGCGCGGAAGA          GCGTCACCGTG CTT CACGGCGACGT          CGCCGCCGACTAGAG  68 35
JJQ57_RS04525  983155 ..  983179 -  -8.5  -3.84825   CCGAGTGAGAGTAAA          GATGGTTCCGC GCA GCGGAAACGTC          AAACCGGGCCGTGGC  71 24
JJQ57_RS04520  981454 ..  981495 -  -7.8  -3.85698   TGGCGTCCTGACAAA CGGGTGCGGCAGGG-CCGG TGAGG CCGCTCCCTGCCGCGCTTG CTAGACGGTGAAGCG  68 26
JJQ57_RS04505 NONE
        pncB NONE
        nadE  977271 ..  977289 -   -16  -3.85698   CCCGCCCGCGACAAA             GGCCCGTC GAC GACGGGCC             TGCCGCACGGGCCGG  95 46
        choE  976212 ..  976229 - -14.1  -4.72272   CCGCTGCATGAAAAA             GCCCGGC CGCT GCCGGGC              TTTTTCATGGGCGCG 100 49
JJQ57_RS04480  974562 ..  974584 -  -3.2   -3.6968   CGACAAGCTCAACAA           GGGCATCCGC ATC GCCGGCACCC           TGGGCCAGCCGGTAC  53 316
JJQ57_RS04450 NONE
JJQ57_RS04445  963336 ..  963351 -  -4.6  -3.15579   CGAACTGGTGATCAA              GGCCCT GGAC ATGGCC               TACGAACAGCGCGGC  47 342
JJQ57_RS04435  961826 ..  961854 -  -5.7  -3.14564   CGAGCTTCTGAGCAA        GGTTGGTGCGCGG GTT CCGCGTGCCTTCC        AGTACGGACCTGGCC  51 72
JJQ57_RS04390  953146 ..  953159 -  -3.7  -5.27335   CTGCTGAAACAAAAA               CGGTC TAAT GTCCG                GCTTTGTCTGAAATA  88 41
JJQ57_RS04385  952927 ..  952943 - -13.7  -5.18726   CGCGGACAACAAAAA              GCCGAGC GAT GCTCGGC              TGTTTGTCTTGAAGA 100 41
        queG  938513 ..  938523 -  -4.6  -3.64487   CGAGAGCTTCAAGAA                 GGGC AAC ACCC                 ACCTGGCGCTGGACG  55 133
        rsgA  936763 ..  936789 -  -9.2  -2.52464   GCGCTCCCGAAGCCA         GCGCCCCCGCGG CTG CCCCGGGCGAGC         AGCCGAAGCCGGCTG  54 160
JJQ57_RS04295  933323 ..  933350 -  -2.5  -3.76125   GCAGTTTAACGGAAA        GCGCGCCCGAC CAGTGT GCCGGGCATGT         CCCTCATTCCGTGCG  52 29
        rhdA NONE
         psd  931553 ..  931584 - -12.3  -2.87132   GGCGGCGGGGAGAGA      TGGGACGGAGACGC TCGGG GCG-CTCCGTCCCG      GCGAGGTCAGGACTG  67 32
        fimW  929390 ..  929400 -  -2.4  -3.65351   CGATGGCCATGGAAA                 GGGC TCA GTCC                 GCGTCCGGGCGGGCG  49 74
        fimX  927282 ..  927307 - -15.5  -4.16943   CGGTAGAGCGGAAAA         GCAACGGGCGCC CAG GGCGCCCGTT-C         TTCATTCGTCTCCCG 100 27
JJQ57_RS04265 NONE
JJQ57_RS04260  923683 ..  923700 - -14.1  -3.75024   GCCGACCAGGAACAA             GCCCCGC CGAA GCGGGGC              TTTTTCGTTTCGGCG  84 41
JJQ57_RS04210  912754 ..  912776 -  -5.4  -3.38272   GATCATCACCTACAA           GATCGCCGCC CAT GCCGCCGACC           TCGCCAAGGGCCACC  53 416
        opmH  909284 ..  909315 - -20.2  -3.06796   CGCCAGGCCAGTCAA      GCGAAGACGCCCCC GACC GGGGGCGTCTTGGC       TCGTGCTAGTACTGC  93 31
JJQ57_RS04135 NONE
JJQ57_RS04130  890988 ..  891001 -  -8.1  -3.61398   GGTGCTGCGCAACAA               CCAGG GCGC CCTGG                AGCGGCTGTTGGCGG  60 121
JJQ57_RS04115  888399 ..  888422 -   -11  -3.75629   TATCGGGAACGGAAA          GGGCGCAG TATACAAC CTGCGCCC           GCGCCGGTCGTTCAG  76 37
JJQ57_RS04110 NONE
JJQ57_RS04105  886348 ..  886367 -   -15  -2.53876   TGGCAGCGGAATGCA            CCGCGGGT GTCA ACCCGCGG             ATGTTGCAGCCGATG  74 47
JJQ57_RS04100  885279 ..  885296 -  -9.8   -4.0616   CAGTTGAAGTAGAAA             GGGCGG CAAAGC CCGCCC              GGTTCAGGCGCTGGC  78 29
JJQ57_RS04060 NONE
        waaL  874852 ..  874885 -  -6.6  -2.74488   GAAGTACTGGAACGA     GAAGACCTTCCGCG GCATTG CGCGGCTGTTCTTC      TCCTGACCGCTGATA  49 50
        aceE  853590 ..  853607 - -12.7  -3.53012   CCGGCGTGCTCGAAA             CCCCTCG CTGC CGAGGGG              AGTATGGAGCGAATT  76 39
        aceF  851750 ..  851769 -   -15  -5.40474   AGGCGGGCAAAAAAA            GCCCCACC ATCC GGTGGGGC             CGAGAGACGAGCGTG 100 89
        dipA  848683 ..  848707 -    -2  -2.91065   AGCACAGAGAGTACA         GCCT-TTCCGC GCCG GCGGGGGAGGC          CTGGGCGATCAGTGC  40 34
        msrA  847602 ..  847612 -  -2.4  -4.07568   GCCGGCGCCGGAAAA                 GCGC GCG GTGC                 TGCTGATCGATCCGC  58 388
JJQ57_RS03950  844993 ..  845012 - -12.1  -5.36441   CCCGGACATAAAAAA            GCCCCGG ACGTGA CCGGGGC             GGGAAAGGGCAGGCA 100 44
JJQ57_RS03945  843009 ..  843019 -  -2.4  -2.52986   AATCAGAGGAAAAGT                 CCGG GCC CTGG                 GCGGCCTTCCGGAAA  37 2
        mscK  839486 ..  839531 - -25.7  -3.08992   AGTGATTTCAAGAGA GGCCTCCGGCAATTCCCGAGCA TTG TGCT-GGGAATTGCCGGAGGGC GTCCAGGCCCGGAGG 100 42
JJQ57_RS03935  838034 ..  838044 -  -3.2  -3.23216   CGTCAGGAGGAGCAA                 CTGA TTT CCAG                 GTGCCGCCCCCAGTC  44 2
JJQ57_RS03930  836803 ..  836833 -  -3.9  -3.62275   ACGCAGCATGGGAAA      GCGCGCCGGGCG GGTCAATG CGCCCGG-GCAA       GGAAAAGCGTGCCTG  53 88
JJQ57_RS03925  835457 ..  835497 -  -4.6  -3.71527   GGGCAAGGACCGAAA CGCTCGCC-CGGACTGACCG ATC CGCTCAGCGTGCGGCG-GCG GCCAGGGCCTGGTCG  58 10
JJQ57_RS03920  834911 ..  834930 -  -4.2  -3.75067   CACGGCAGAAAAAAC            CTTCGCCG GGCC CTGCGAAA             TCTGCCAGTCAGGGC  56 34
JJQ57_RS03915  833791 ..  833849 -  -9.6  -2.71144   CATCGTGGTCAACCA GTTCCAGCCGCGCGCCAGCCTGCCGCAGC AACT GCT-CGACGAGCTGGTG-GCGGA-GGAAC TGCCGGTGCTGCCGG  55 187
JJQ57_RS03900  830708 ..  830727 - -16.4  -3.05384   TCTGGTCGGAGTGAA            GGCGCCGG GAGA CCGGCGCC             TCGAACTCAGTGGGC  84 32
JJQ57_RS03890  828579 ..  828591 -  -6.2  -2.87944   CAGCAGCATAGGACA                GCGC TTGCC GCGC                TCAAGGGAAACGCGA  48 26
JJQ57_RS03885  827433 ..  827450 - -12.7   -4.0825   GCCGGAACGAAAGAA             GGGGAGC AGAG GCTCCCC              TTTTTCATGCGCGGG  86 113
JJQ57_RS03825  808950 ..  808973 - -16.8  -4.82901   TCCGCCGGATAAAAA          GAAACCCCGC CTTG GCGGGGTTTC           TTTTTGCCTGCGCCT 100 78
JJQ57_RS03800  802662 ..  802690 -  -2.9  -3.06796   GCTGACCCCAGTCAA        GCGGGGCGTCTTC CAG GAAGGCGCTCAGA        ACAGGTCGATCGGAT  43 21
        argS NONE
JJQ57_RS03790  799929 ..  799958 -    -7  -2.52464   GTGCGTCGGAACGCA       CGGCGTGGCCCGC GTTCA GCGGGCCTTGC-G       TTGCTGTAACAGCAG  48 11
        hslV NONE
        hslU  797862 ..  797874 -  -6.9  -2.98072   CGGAGTACAAGGATA                CCCCG GTT CGGGA                CCGCGCGGCCCGCCG  51 71
JJQ57_RS03775  797409 ..  797452 -  -5.9  -4.58395   GGCAGCGGGGAAAAA TCGCCAGGATGCCGTGTGCCGC GAA GGGGCACTCGGC--CC-GGCGC TTCAGAGCATCAGCT  76 27
        phaC NONE
        phaZ  794258 ..  794270 - -10.5  -2.52464   GTCGCGGCGAAGCCA                GGCGC CAT GCGCC                GTTGCGGAACATTGA  59 101
        phaC NONE
JJQ57_RS03755  791661 ..  791684 - -13.8  -2.52464   CCTGGCGGCAACGCA          CACGCCCGGC ACTC GCCGGGCGTT           TTTCATTCCGGTCCC  71 28
        ubiE NONE
JJQ57_RS03730 NONE
        ubiB NONE
        hisI NONE
JJQ57_RS03715 NONE
JJQ57_RS03710 NONE
        tatB NONE
        tatC NONE
JJQ57_RS03695 NONE
JJQ57_RS03690  781474 ..  781514 -  -9.6  -3.65902   CTGATCCTACGCAAA  GGTGCCCCTCCTGTCC GCTTTCGAT GGACGGGAGGGGCTGC  CGATGCAAGGAGGAT  68 53
JJQ57_RS03685  780562 ..  780576 -    -7  -3.53012   CGCGTGGTGCGCAAA               CGCGGC AAG GCCGAG               CGCGAGGCCAAGGCG  58 420
JJQ57_RS03645  771046 ..  771058 -  -3.3  -3.68222   CCTCAAGGGCAAGAA                CGTGG TGA CCACC                GCCGGCACCACCAAC  53 462
JJQ57_RS03625  767392 ..  767402 -  -6.8  -3.28924   TACTTTCCTTGATAA                 GGCT GCT AGCC                 TAGGAAATCCGCCGG  54 525
JJQ57_RS03520  741492 ..  741506 - -12.8   -3.3782   GAGCCAGTGAAGGAA               CGCCCC GCC GGGGCG               TTTTTTCTTTCCAGC  74 148
JJQ57_RS03470  729790 ..  729833 -  -8.1  -3.61764   GCAGCAAGGTCTAAA CCGTTGCCGTACCGGCGCGCCG CAA CGGCGTGCCT-CACGGC--CGG CAGGCAGGGCAGGGG  65 64
        glnA  724500 ..  724517 - -12.7  -5.24129   CCGGCCCATAAAAAA             GGCCTCC CGAA GGAGGCC              TCAAGAGGGTGACTC 100 62
JJQ57_RS03450  723983 ..  723997 -  -8.5  -3.10715   CGGACGAGCAGGGAA               CGCCG GCGGA CGGCG               GCATCTAGCGCGACA  57 30
JJQ57_RS03440 NONE
JJQ57_RS03435  720377 ..  720389 -  -3.3  -5.41143   GAGTCGGGAAAAAAA                CCGGA AAA TCCCG                CCCACGGCGGAGTGG  91 56
        ntrB NONE
        ntrC  717594 ..  717611 - -10.5  -4.77438   ACGGACCATGAAAAA             CGGAGCC CGAA GGCCCCG              TTGGGTCGCTCATGG 100 54
        trmL  715717 ..  715733 - -10.8  -3.85817   AGCGCTTGCGAGAAA              GCCCGC CTTGC GCGGGC              TTTTTCATGCCTGCC  79 48
JJQ57_RS03395  712565 ..  712596 - -19.6  -3.29144   CGATGGCCTGCAGAA      GCGGCGGATAACCGC GAC GCGGTTATCCGCC-C      TGCGCGGGAGTTCGT  95 51
JJQ57_RS03390  711402 ..  711427 - -10.3  -5.75342   CGCCGTTAAAAAAAA         CGCCCCGCACC GCGC GCTGTGGGGCG          CTTCCACGTATTTCA 100 87
JJQ57_RS03385 NONE
        cptA NONE
JJQ57_RS03375  707892 ..  707905 -  -6.7  -3.14132   GCGTCCGTGCAGGAA               TGACG AGGG CGTCA                CCTTAACCGCTGCCG  53 61
JJQ57_RS03370  706315 ..  706332 - -11.3  -3.15249   CAGATGCGCCAGGAA             GGCTTCG TCGA CGAAGCC              GTCGCCAACTACCTC  67 84
JJQ57_RS03325  700068 ..  700085 -  -7.7  -2.87468   GCCGAGCATATCAGA             GGCTGTCC AGC GG-CAGCC             CGTGGCGCGCGGCGA  53 3
JJQ57_RS03320 NONE
JJQ57_RS03315 NONE
JJQ57_RS03310 NONE
        mutY NONE
JJQ57_RS03300 NONE
JJQ57_RS03295 NONE
JJQ57_RS03290  693599 ..  693614 -  -7.5  -5.49234   ATAGGCAACAAAAAA              CCGGC TCAGAG GCCGG               TTTCTTGGGGGTTTC 100 73
JJQ57_RS03285 NONE
JJQ57_RS03280  691410 ..  691443 -    -6  -3.02511   GGCATTGCCTGAACA     CTGCCTAGGCCATGC CCGGC GCATG-CCTGGGCAT     CAACGTTGGCTAACG  49 435
JJQ57_RS03275 NONE
JJQ57_RS03270 NONE
JJQ57_RS03265  685654 ..  685667 -  -2.4  -3.37354   CAGATTCAGCGAGAA               CTGT ATTTCA ACAG                ATCGACCAAGGCTTC  45 55
JJQ57_RS03250  684560 ..  684574 -  -9.2  -4.26903   GCTACCCCAGTAAAA               CCGGCA AAT CGCCGG               TTTGGACCTGCGCAC  83 212
JJQ57_RS03245  683552 ..  683571 -   -10  -3.01791   AGGGTCCTTTGAAGA            GCGCGAGCG GGC CGCTC-CGC            AGTTACATACCCGGC  62 249
JJQ57_RS03175  674505 ..  674515 -  -3.2  -3.17075   TCCTGGCGAAGGCAA                 GCTA GCA CAGC                 GCTTCAACCGGAGCC  44 213
JJQ57_RS03170 NONE
JJQ57_RS03165  672862 ..  672913 - -10.2  -2.62292   AATCATGAGAAGTCA GGCCTGAAGGC-GGCCACCGCCGGG ACGCG CCCGGCGGTAGCCTGGCTT--GGCA TCAATAGATGCTGAA  59 26
JJQ57_RS03160 NONE
JJQ57_RS03155  671422 ..  671446 - -11.3  -4.11216   GCGGCAGCGGGAAAA          CGGGGAGGCGA TTA TAGCCGCCCCG          CAGGCATCGGAAAGC  84 47
JJQ57_RS03150  669867 ..  669879 -  -4.1  -4.63486   ACCGTTGCAATAAAA                GAACA ATC CGTTC                CTTCGAACGTCATAC  72 325
JJQ57_RS03145 NONE
JJQ57_RS03140 NONE
JJQ57_RS03135 NONE
JJQ57_RS03130 NONE
JJQ57_RS03125  664550 ..  664560 -  -2.4  -4.57569   GGACGCTGTGAAAAA                 GCGC GAG GCGT                 GAACAATGGGAAACG  68 400
JJQ57_RS03110  661707 ..  661745 - -24.1  -3.53012   TCTTGGCTCTTGAAA  CAACAAAGCCCCGCACGG TCTC CCG-GCGGGGCTTTGTTG   TTGCCGTTGTGTTTA 100 38
        rfbB NONE
        rfbD NONE
        rfbA NONE
        rfbC NONE
        dctB NONE
        dctD  646585 ..  646600 -    -9  -3.14132   TCTGTCTTTTATGAA              GAGGAC AGAT GTCCTC               TCGGCGTGGCCGAAC  61 214
        dctP NONE
        dctQ NONE
        dctM  643290 ..  643321 - -23.2  -4.15657   GCACAAGGACAGAAA      TGAAGAAGCCCGGC GTTC GCCGGGCTTCTTCA       TTTGGGCTTCAGGGT 100 326
        arcD NONE
        arcA NONE
JJQ57_RS03005 NONE
        arcC  637987 ..  638003 - -15.1  -3.86981   GAGGAGAATGAAGAA              GGGCCGC GAA GCGGCCC              TGGGGGGGTATCAGC  91 36
JJQ57_RS02995  635619 ..  635640 - -12.3  -4.56914   GCACTGAAACGAAAA           GGCCCGGTCT TCT AG-CCGGGCC           TTTGCCGTTGTGGCG 100 45
        yrfG  631894 ..  631911 -  -3.3  -4.16842   GTCACCGTGAAGAAA             GGCGACAC CCT GAG-CGCC             ATCGCCAAGGCCGAA  63 197
JJQ57_RS02960  630441 ..  630453 -  -4.7  -2.52676   CAGGCTGGCAAGGCA                TGGGC TGG GCCCT                ATCGTTCTAGGTGTG  43 72
        fdhD NONE
JJQ57_RS02950  627233 ..  627259 - -23.8  -3.01791   ACTTTTTCCTTAAGA         CGCCGCCTCCTG TTG CAGGAGGCGGCG         TTTTTCGTGGGCTTC 100 39
JJQ57_RS02945  626402 ..  626423 - -15.1  -3.85698   GGTCGTTCGCACAAA           GGCCGGACC ATCA GGCCCGGCC            TTTGCGTCGTGGGGA  91 50
JJQ57_RS02940  625894 ..  625911 - -14.1  -4.61873   CGGTAGAAAGTAAAA             GCCCCGC GGTC GCGGGGC              TTTTCCACATCGGCT 100 57
JJQ57_RS02930  624376 ..  624421 -  -5.1  -3.61398   TCTGCTGGTCAACAA CCCGCGCGAGGTCGGCGAGGC GGAC GCCCTGGCGATCTATCGCGCG GCATACTGAATCCCT  55 482
JJQ57_RS02905  619080 ..  619117 -  -2.5  -2.60032   CGGTCGGGAAAAAGG   CCGTTGAACCCTGGCCGC GCA GCGGC-AAGCTGCCGCGG   GAAGAACTGGTCATC  38 70
JJQ57_RS02895  617976 ..  617991 -  -4.6  -2.97188   GTAGACCACTACAGA              CGACCG CTTC CGGCCA               GCTCATAGCGCGCCG  47 3
JJQ57_RS02890  616665 ..  616678 -  -9.5  -5.55664   GCACCATGAAAAAAA               CCGCC TTCG GGCGG                TTTTTTCATGGGCGA 100 93
JJQ57_RS02875  613140 ..  613166 - -14.5  -2.62463   GCCAGGACTGAGAAG        CGCCGGTCTCCC GCAG GGGAGACCGG-G         ATGGCCTCAGGCCGA  74 32
JJQ57_RS02865 NONE
        rimK NONE
JJQ57_RS02855  609710 ..  609722 -  -4.7  -3.28924   CATCCGTGGCGACAA                GGCGC GTG GCGGC                AAGGGCACCGGCCTC  49 248
JJQ57_RS02840 NONE
JJQ57_RS02835 NONE
        gshA  602944 ..  602997 - -12.1  -2.53822   GGTATTCGAGAAGAG CCTGTGATCCGCCGGCGCGTCCCTG GGCG CAGGGGCGCGCCGGCTTCGCTCAGT TGCTGATCAGGCCGA  65 21
JJQ57_RS02820  600579 ..  600589 -  -6.8  -3.05384   CTGGCGCGTATCGAA                 CCGA TGG TCGG                 CGTGCTGCGCCGGCT  51 50
JJQ57_RS02800 NONE
JJQ57_RS02795 NONE
JJQ57_RS02790 NONE
JJQ57_RS02785  592727 ..  592740 -  -5.9  -3.40403   GCCGGCGGAGGACAA               CCCGC TGAA ACGGG                CGCCGCATACCCTGG  55 245
JJQ57_RS02750 NONE
JJQ57_RS02745  582395 ..  582407 -  -4.7  -3.30124   CGCCAGTCCTCAGAA                CAGCG CCG CGCAG                TCACGCATGACCTGC  50 7
JJQ57_RS02715 NONE
JJQ57_RS02710 NONE
        ssrS NONE
JJQ57_RS02700  575781 ..  575801 -  -2.6  -4.07885   GACCGGCCTCGAAAA            TTGCCT GGAAGGGGG AGGCAA            TCGATGAAGCGCAAG  57 211
JJQ57_RS02695  574926 ..  574958 -  -3.3  -3.01712   TGCTGCCGCTGAACA      TCCTTTCGGGCGGCA GCA CGCCACGGGAAAGCA      TGCCGGAACTGGTGC  42 229
JJQ57_RS02670  568312 ..  568340 - -17.5  -3.90922   ATTGGTCGGAAATAA        GAAAGCCCCGGTC GGA AACCGGGGCCTTC        ATAGGGGAAAAACAT 100 131
        glpT  566809 ..  566837 - -17.4  -3.05384   CGCCGCGGGACTGAA        CGCGGCTCCGGC CTGGC GCCGGAGCCGCC        GCGTCATCAGCCGGC  88 32
         ppx  558586 ..  558601 -    -9  -3.36327   GTACCTGACCGACAA              CACCCA GGCC TGGGTG               TTGCAGGCCGACGGT  63 126
JJQ57_RS02620  554547 ..  554572 - -13.9  -2.90392   TATCGCGCAAGCATA         GCGAGCCGCCG GCCC CGGCGGCCAGC          CGGAGCGGAGGGTAC  74 93
        elbB  553773 ..  553792 - -11.4  -4.14739   GCACGGATTTGAAAA            GGGCGG-CG GCG CGACCGCCC            TTGTGCTTGGCCGAT  84 40
JJQ57_RS02610  552722 ..  552748 - -18.1  -2.70932   GGGTTCGCGCAACCA         CGACGGCCAGT GCGAT ACTGGCCGTCG         TCATTTCTACGGAAG  86 515
JJQ57_RS02575  545831 ..  545877 -  -7.8  -3.53343   AAGCCTGTGGCGAAA CCCGC-GGCCGCGAAGCCTGC AGCCAA GCCGGCTGCGAAGCCTGCGGC GAAACCGGTGGCCAA  60 203
JJQ57_RS02565  544543 ..  544570 - -13.5  -3.73224   CGAGTCGTTACGAAA        CGGCGCGTCTCC ATGCG GGAGA-GCGCCG        TTTTTGCATTTTAGC  84 36
        argH  534949 ..  534964 -  -6.8  -3.28712   CCTCGGTCTCGACAA              GGCCAA TGCC CTGGCC               TTCTGGGACTGCCTG  54 508
JJQ57_RS02485  526380 ..  526390 -  -2.4  -2.62396   CATTCGCCGACACCA                 GTCG GCC CGGC                 TCCGCTCATTCGTCG  38 31
JJQ57_RS02480 NONE
JJQ57_RS02475  525092 ..  525112 -  -8.2  -3.12351   TCCGGGCACAGGCAA            GGCCAGGC GCCGT GCCTGGCT            CCGGTCATGCCATTG  58 133
JJQ57_RS02470 NONE
JJQ57_RS02465  521406 ..  521421 -  -7.5  -2.79248   GGAAATCGAATACCA              GCCGG AAGCCG CCGGC               GACTACGCGCGCTGA  52 84
JJQ57_RS02445 NONE
        lysA  518670 ..  518725 -  -4.1  -3.23216   GTCGAGGACCATGAA GTCGTTGCCCAGGCCATGCATCTTG GTGAAGCG CAAAA-GCATGGTCTGGGCCTC-AC TGCGGCAGCAGGCTT  47 22
        dapF NONE
JJQ57_RS02430 NONE
        xerC NONE
JJQ57_RS02420  515288 ..  515305 -    -4  -4.07568   GGCCGGTGCGGAAAA             GCCGCG GGCCAG CGCGGG              CTACTTCCTGTTGGC  61 243
JJQ57_RS02410  512707 ..  512733 -  -2.2  -4.38154   AGACCGCCGAGAAAA        TCAC-GCCCGG CTCGGT CCTGGCCGCGA         TGGTGATCCTGCTCG  65 76
JJQ57_RS02380  507617 ..  507631 -  -5.7  -4.13728   GAGATAGTGTCAAAA               GCGAA ACCCA TTCGC               AAATAGCGTAATTTC  67 315
JJQ57_RS02370  505633 ..  505663 - -10.4  -4.07568   TCTTGGCCGGGAAAA       TCGAGGAGCAAGCT GAG AGTATGCCCCTCGA       GGCTCTGGGGCCTGT  78 135
JJQ57_RS02350  502717 ..  502730 -  -2.4  -3.88291   CAGCATCGTCAGAAA               TGAC GATGAT GTCA                ACGCTTAACGGCTGA  54 107
JJQ57_RS02345  502007 ..  502025 -    -3  -2.83504   GGTCCATGAAAATAG             CGCCAAGT TGC ATTAGGCG             GCCTCCTCGTCGTTG  42 19
JJQ57_RS02340  501046 ..  501064 -  -3.8  -3.09878   CCGAGCCAGGGAAGA             CCCTGG GTAAGTA CCAGGA             TGGGTGCAGCCTTAT  45 147
JJQ57_RS02315 NONE
JJQ57_RS02310  496427 ..  496444 - -14.1  -2.80307   TAAAGCTGCACGATA             GGGCCGC GACT GCGGCCC              TTTTTGTTTCTGGGC  72 293
JJQ57_RS02300  494596 ..  494614 -  -5.2  -4.17701   TCCAGAAATGACAAA             GGCGGC TTTGGGG ACCGCC             TCGGACCATGTTTCG  65 398
JJQ57_RS02265  486156 ..  486192 -  -4.4  -4.34402   CCGGCTAGATGAAAA   GCTCAGCGTATGGACTG AAAC CAGTCT-TGTGCTGAGC    AGGCGGACCTAGTGG  66 375
JJQ57_RS02245 NONE
JJQ57_RS02240 NONE
JJQ57_RS02235  479091 ..  479103 -  -9.1  -3.41527   CAATTTCGACCAGAA                GACGG CGA CCGTC                ACCTACGATCCCGAT  63 342
        merR  477924 ..  477934 -  -5.4  -5.40072   CGGCTGTTAAAAAAA                 CAAC ACC GTTG                 TTTGAAAGCACCAGC 100 167
JJQ57_RS02210  476924 ..  476934 -  -2.4  -3.21912   GGCTTAAGGCAGTAA                 TGCC TTA GGCC                 TTTTTGCCATCATTT  43 19
JJQ57_RS02170 NONE
        mexR  471728 ..  471759 - -19.6  -3.63805   AGCGGATACCTGAAA      CGAAAAACGCCGGC GATC GCCGGCGTTTTTCA       TTGTGCTTCGAAAAG 100 48
JJQ57_RS02145 NONE
JJQ57_RS02140  466497 ..  466508 -  -7.2  -2.72799   GCGGGAGAGATATCA                GGCG AAGT CGCC                 CCAGAGTTGCTGGGC  52 11
JJQ57_RS02135  464626 ..  464643 -  -2.6  -3.14132   CTGCTGGGCTACGAA             CAGGTG CGGATT CCCCTG              ACCCTGGCCTGTGCC  42 426
        gshB  448802 ..  448828 -    -5  -4.07687   ATGGGGGGCGGAAAA         GTCTATGACGCA CTC CGCGCCTTGGAC         ACGCGGTCGCTCGCC  63 92
JJQ57_RS02075  447839 ..  447853 -  -9.2  -3.89346   TTCGGACGCGAGAAA               GCCAGC CTT GCCGGC               GCTACTTGCTGGACA  74 27
JJQ57_RS02070 NONE
        ruvX  446772 ..  446798 - -15.9  -3.60151   GTGGCGAAAGCATAA         TGGCAACCGGC GGCGT GCCGGCTGCCA         TGGGTCAATCCGGGT  86 30
        pyrR NONE
JJQ57_RS02055 NONE
JJQ57_RS02050  443846 ..  443863 - -14.1  -4.87626   CGCGAAGATGAAAAA             GCCCGCC GGAT GGCGGGC              TTTTTCGTGGTGGCA 100 45
        czcD  438939 ..  438951 -  -6.2  -3.65046   CCTGCACGCGAACAA                CGCC AACCA GGCG                CTGGAGCGGATCATC  59 474
JJQ57_RS02015 NONE
JJQ57_RS02010 NONE
JJQ57_RS02005 NONE
JJQ57_RS02000 NONE
JJQ57_RS01995  432273 ..  432319 - -14.3  -2.62613   CGCCAGTCTAAAGAG CGTCGCCCCCAGCGGCAAGCGC GCTG GCGCGCGCCG-TGGGAGCGGGG TCAGGCGCGCTGCGA  74 26
JJQ57_RS01990 NONE
        metW NONE
JJQ57_RS01980 NONE
        rdgB  429280 ..  429320 - -18.2  -3.72576   GGCGGCCGGACGAAA CGCCG-TGCCGACGCCGCC CGGG GGCGGCGCCGGCGGCTGCG  GCTCAGAGGCCCAGG 100 28
        hemW NONE
JJQ57_RS01965 NONE
JJQ57_RS01960  427233 ..  427257 -  -4.1  -3.78934   TGGGCTGGACAACAA          CGAGCCGATGT ACG ACTTCGGCGTG          CAGGTCGGGCCGCGC  57 92
        mtgA  422376 ..  422403 -  -6.2  -2.57795   CCGAGGAGCAACTGA        GCCTGCAGCG-GG CAT CCGCGTTGCAGCC        TGGCAGCGCGCCGCA  46 295
JJQ57_RS01900 NONE
JJQ57_RS01895 NONE
        rsmD NONE
JJQ57_RS01885 NONE
JJQ57_RS01880 NONE
JJQ57_RS01875  411983 ..  412029 -  -6.3   -3.5393   AGCACCTGCTGGAAA GCGACCCGGAGCTGGCGGCGCG CTAC CGCGCCTTC-GCCCAGCGTTGC CTGGTCAACGCCAAG  56 286
JJQ57_RS01865  409917 ..  409937 -  -9.6  -2.78547   GCAGCGTAGGAATGA            GGGGGCGC CGCAC GCGCCCCG            GTTCAGCGCACGAAC  57 28
JJQ57_RS01860 NONE
JJQ57_RS01855  407604 ..  407650 -  -2.9  -3.01712   CCCGTGCGGCCAAGA CGCACGG-GCCATC-GGCCTTTA GCC CATAGGTCTGATGGCGCCGGGCC GGCTGCCGCGGCGCG  43 60
        coaD  406986 ..  407000 -  -5.6  -3.09492   TCGGTAACGGGAATA               GCGGAA TTG TGCCGC               ATCGGCGCCCGCAGT  49 82
JJQ57_RS01845  406634 ..  406651 -  -2.5  -4.26019   CAAGGATAGCCAAAA             GCGCGTC GGAC GGGGCGC              GAACCGTCCCTGAAG  62 59
         ggt NONE
JJQ57_RS01835  403750 ..  403774 -  -4.2  -4.09685   CGGCAGCCGGGAAAA          GGCCTTCCAG TGGTT CTGCAAGGCT          GCGACCCAGGGAGAT  61 492
        pfpI  399299 ..  399325 - -17.3  -2.79679   AAGAGCGCGATTATA         GCGCAGCGACG GGGTT CGCCGCTGCGC         GAACGCGGGCCGTTC  84 39
JJQ57_RS01800  398047 ..  398060 -  -5.2  -2.56596   GGGCGGATGAACGCA               GGCG CTCATC CGCC                GGGACGGGCTCAGCC  43 35
        ilvD  395865 ..  395883 -  -9.5   -4.8622   CGCGTGAATGAAAAA             GCCCGGC GCGGG ACCGGGC             TTTTTTCGTCGCGGG 100 46
JJQ57_RS01790  394254 ..  394283 - -17.1  -4.07687   ACCCTTCGGCGAAAA       CCGCGACGCCACC CGGA GGTGGCGCCGCGC        CTATCAGTGTGCGGC 100 29
JJQ57_RS01785  393338 ..  393357 -  -9.2  -3.53012   GCCGGGCCGGCTAAA            CCTGGTGG TCAG CCGCCAGG             CCGGCCTGGCACTGG  64 343
JJQ57_RS01765  389082 ..  389096 -  -2.7  -4.90217   CAAACATAGCAAAAA               GCGCC CCGGC GGCTC               ATGCTGGCTTGCCAG  74 519
JJQ57_RS01755 NONE
JJQ57_RS01750  386202 ..  386212 -  -2.4  -3.56704   CGCGTAGGAAACGAA                 GGGC ATG GGCC                 TACCTCTTGGGCGAT  49 55
JJQ57_RS01745  385224 ..  385234 -  -6.8  -2.73364   CCTGTACGCCAACCA                 CCTG GAG CAGG                 CCGACCTGCAGTTGA  48 201
JJQ57_RS01725  381379 ..  381413 - -15.8  -2.71364   GCACCGGGTCAACCA    GGCGCTG-GCCTCGA AGATGG CCGAGGCCCAGCGCC     TGAGCGAAATCGATC  75 505
JJQ57_RS01705 NONE
JJQ57_RS01700  375298 ..  375310 -  -3.4  -3.61398   GGCGGTCGGCAAGAA                CATC GTGCT GATG                GTGGCCACGCTCTGG  49 519
        rpiA  370952 ..  370962 -  -4.6  -2.87132   CCGTCTGCTGAGACA                 CAGC GTA GCCG                 CTTTTGTTGCAGTGT  46 77
JJQ57_RS01670  370489 ..  370508 -  -7.8  -3.30124   GCGCATCCGGCACAA            GCCGTTCG CCAT CGAATGGC             TGTCCTGAGGCCCGC  58 76
JJQ57_RS01660  367208 ..  367252 -    -4  -3.87994   ACCCAGGCGGACAAA CCGTTCGCCGTGCACGTGGT GGACG ACCCCGGGCGCGACAAGCGC CTGTTCGTCCGCGAC  57 331
JJQ57_RS01650 NONE
JJQ57_RS01645 NONE
JJQ57_RS01640 NONE
JJQ57_RS01635  362325 ..  362363 - -14.5  -3.64236   ATCGAAATGGCCAAA  CTGGCTGGCCGGCCAGCG CTGG CGCGAGCTGGCC-GCCAG   CGCCGCGTCGATCAT  85 37
JJQ57_RS01630 NONE
JJQ57_RS01625  359445 ..  359474 - -20.7  -3.75153   GGCCCTGAATCGAAA       CGGCCCGCCTCTC TTCC GGGAGGCGGGCCG        TTTCGCGTTCCGACC 100 61
        serA  354266 ..  354310 - -21.8  -2.53263   GTTACCGTCAAGTGA CGGAAACGAAAAAAGGAGGCC GCTG GGCCTCCTTTTTCC-TTTCCG CCGGACGCTGCCTTA 100 38
JJQ57_RS01590  352718 ..  352742 - -22.9  -2.90511   CATCGACAAACACGA          CGGCCGCGTCC CTC GGACGCGGCCG          CTTCCCCCGTTCGGG 100 48
JJQ57_RS01585  351943 ..  351975 -  -3.9  -3.33696   CTGGTCTTCAACGAA      GACGAGCTGGACCGC GCC GCGGTCTGCCTGGCC      GGCCTCGACGCCGGC  48 51
JJQ57_RS01575  350462 ..  350479 -  -3.3  -2.73364   TCTCTACCTCAACGA             TGCCTGG TTGC CCGAGCA              TGGCGGCGCGCTGCG  40 228
JJQ57_RS01565  348714 ..  348752 -  -2.1  -2.62263   AGCTGGGCGAGACGA  TTCTCCTGGCGCCGCTGG TGCG CCCGCG-CGCCTGGGGCT   GGTCGAAGCTCAGCT  38 434
JJQ57_RS01555 NONE
JJQ57_RS01550  346424 ..  346441 -  -6.2  -3.01712   GCGGCTGGGCGAACA             CCGCCG GTTGTT CGGCAG              GCTGCCGCTGTTCTC  49 488
        hacB  343218 ..  343235 - -12.7  -5.07652   CCGCCGAAAAGAAAA             GGCCACC TGCG GGTGGCC              TTTTTCATTGGCGCG 100 165
JJQ57_RS01495  332041 ..  332099 - -26.9   -3.1733   GTTCCGAGAAAAGGA CCGGGGCGGTTTCCCAGACAC-AGACGC CCCC GCGTTGAGTGTCTGCGAAACCGCCCCGG ATTTCGCTGCGTACG 100 77
JJQ57_RS01490 NONE
JJQ57_RS01485 NONE
        aguB  328997 ..  329054 -    -2  -2.71712   CGCTGCTCCTGAAAT CGTTGCTATGCGCGGCGGACG-CCGGCGC GGAAT GCGCGGGGCGTCC-CCGCGCG--G-ATCG TTTCCCGAGGCCTCA  39 38
        aguA  327762 ..  327788 - -23.8   -4.8048   GCCGGACAGGAAAAA         GCCCGCGTCCTC CTG GAGGACGCGGGC         TTTTTTCATTCAGGG 100 112
JJQ57_RS01440  317354 ..  317381 - -14.9  -3.32294   GTAAAGTGGTTATAA        GACGGCGAAGC GGCCCG GCTTCGCCGCC         AGGCTCAGTCTTCCG  82 30
        oscA  316929 ..  316965 -  -2.8  -3.08015   GGAACGACGGGAACA   CGGGGC-GTCAGGCGCG CATT CGCGGCCGACAGCTGCA    GTACCGGTGCGGATG  43 100
JJQ57_RS01430 NONE
        cysT NONE
        cysW NONE
JJQ57_RS01415  312848 ..  312877 - -11.3  -3.19192   CTGGAGCGAACGCAA       GCCGCACCTCGGCG GCG CGCTGGGG-GCGGC       GTTGCTGGAGGCCTG  64 160
JJQ57_RS01405  311464 ..  311478 -    -7  -3.59979   TGGCGTCAGTGGAAA               CCGCGC CAG GCGAGG               TCGGCGCCGAGCAGC  59 1
JJQ57_RS01400  310488 ..  310511 - -18.2  -3.28712   CGGGCGGCGTGAGAA          GGTCTCCCGC GAGC GCGGGAGACC           GGGGCGGGAGCGTTA  93 38
JJQ57_RS01390 NONE
JJQ57_RS01385  308225 ..  308237 -  -9.1  -4.54727   GGCGGCAAATCAAAA                TCCGC AGG GCGGA                TTCGAAAAAATGCGC  91 116
JJQ57_RS01380 NONE
JJQ57_RS01375  305763 ..  305798 -  -5.3  -3.61398   CTGCGCCTGCAACAA    CTGGTCGAACCGGGGC TGGAG GCGCCGGGTTG-CCAG    GAGTACCAGGTGCGC  54 196
JJQ57_RS01355  302950 ..  302962 -  -7.7  -3.01712   GCTTTCCCGCGAAGA                GCTGA TCC TCAGC                CTGGCGACCCAGGCC  53 313
JJQ57_RS01335  297769 ..  297796 - -13.5  -5.24129   GGCCGGCATAAAAAA        GCCCCG-CCTGA GCGAT TCAGGACGGGGC        TTTCCTTTAGGCTTA 100 109
JJQ57_RS01330  296070 ..  296093 - -14.6  -3.35679   CGGCTCGACGGAGAA          CCGGCCGTAC AGGT GTACGACCGG           TGTGCCTGTCAACTC  82 39
JJQ57_RS01325 NONE
JJQ57_RS01320 NONE
JJQ57_RS01315  290171 ..  290184 -  -3.1  -3.43492   GCATACCCAGCAGAA               CTGCT CAAA AGCAA                ACCGACGAGAGAGAG  49 61
JJQ57_RS01310  288520 ..  288542 -  -9.1  -2.90075   GCTTGCGCAACCATA           CCAGAACCG TCGAC CGGCCCTGG           ATGCCATACCGCACC  58 111
JJQ57_RS01290  284935 ..  284945 -  -2.4  -4.18018   TCTCCCCAGGGAAAA                 GGCC AGG GGCG                 AGGCGGAGCGTCTGG  59 87
JJQ57_RS01285  284056 ..  284067 -  -5.8  -3.50393   TGCCATTCCATATAA                GTGC ATGT GCAC                 GCATCCTGTTGAGGG  55 115
JJQ57_RS01280 NONE
JJQ57_RS01275 NONE
JJQ57_RS01270  281621 ..  281637 - -10.1  -5.15969   CGGGAACGGAAAAAA              GCCCGTC GGG AACGGGC              GAAGAGGGAAGCTTA 100 38
JJQ57_RS01265  280672 ..  280682 -  -2.4  -4.68424   GAACCGATTGAAAAA                 CGTC ATC GCCG                 GCTTCCCCGACGAAG  72 84
JJQ57_RS01260  280120 ..  280130 -  -2.4  -4.07885   GAGCCGGCGGGAAAA                 GGGC AGG GCCG                 GCATGTACGCTTCAG  57 37
JJQ57_RS01255  279183 ..  279219 - -11.3  -2.89564   GTTCGACGCCATAGA    CGGCGAGTACGCCGGCG CTG CGCCGGCGCGCGAGCTG    TTGTTGCAGTCGCTG  61 424
        pobA  277283 ..  277336 -  -2.4  -2.78384   GCCTGGGGTAGGACA GGTGCCGGGGAATATCGATCCGAGGG TCGT CTTTCG--TCGATATTCGCCTGCGCC AACGTTGCGTCCCGC  39 82
JJQ57_RS01240  275664 ..  275698 -  -6.3  -3.54424   GGTTACTTTTGTAAA     CCGGACGCCGTCGCC AACGG GACGAAAGCGTTCGA     TTATCGGCGTCCGCT  59 40
        aroQ  275135 ..  275166 -  -5.1  -3.29144   TCAGGCCGGCGAGAA     CCGATCGCGGCGCGC TCAT GCG-GCCGCC-TCGA      AACGCTCGGCGAAAT  50 9
JJQ57_RS01230  273980 ..  273996 -  -3.6  -3.43961   CGAGAACATCCACAA              GGGCGA GCACA TCGCCA              GCAGCGAGCTGGTGC  49 328
JJQ57_RS01215 NONE
JJQ57_RS01210  267885 ..  267918 -  -2.3  -3.50853   GCTGCTGAAGGAGAA     GGTCAGCCTCGGCCAA TGG CTGGCGGTG-CTCACC     GGCTTCATCGGCGTG  48 513
JJQ57_RS01185  262486 ..  262518 -  -8.4  -3.79906   GTATTGGCACAACAA     GTTCGGC-GTCGACG GCGG CACCGGCAGCCGAAC      CTCTACGCCGACGTT  68 303
JJQ57_RS01130  251906 ..  251922 -  -3.6  -2.74461   CATTGAGTGGGAAAT              GCCAGG ACGGA CCTGGT              GGGAAAGGTCGTTCA  40 38
JJQ57_RS01125  250942 ..  250971 - -15.7  -5.75342   CGTCGGCAAAAAAAA       CGACGGGCCCCAA GTCG TCCGGGCCCGTCG        GGTCAAAGCGCTGAC 100 48
JJQ57_RS01100  243755 ..  243794 -  -5.8  -4.59773   CGGGAGGGGTAAAAA  GGGCCGTCATG-TCC TAGCGCGTGGC GGAGCATGACGGCCT  GGAAACGCCTTGGGG  76 260
JJQ57_RS01095  242495 ..  242507 -  -2.6  -2.76815   ATCGGCCTGAACAAT                CCAC GTACG GCGG                TGATCTTCGGTGGTC  38 280
JJQ57_RS01040  234014 ..  234038 -  -9.2  -2.57013   GCTGAAGCGAATCCA         CGCCGTCCGGC GCAG GCCGGGCGG-G          CAACGGTTTCGACCG  56 171
JJQ57_RS00990  222550 ..  222575 - -17.5   -2.8739   TAGAGGAAGGGAAAC         CGCGCGGCGGC TCAG GCCGCCGCGTG          TTGCGCCTGGTCCAG  87 11
JJQ57_RS00980 NONE
JJQ57_RS00960 NONE
JJQ57_RS00955  214217 ..  214239 - -10.4  -2.79796   CTGGATGGGAGGAGA           GGGTGGGGCC CTC GCCCCCGCCC           TTCCCGCAGGGGGAA  60 62
        atsA  212238 ..  212248 -  -8.2  -3.14132   GGTCGGCCTGACCAA                 GGGC CTG GCCC                 GCGACCTCGGCCCGC  56 355
JJQ57_RS00940  210609 ..  210627 -  -2.4  -3.66356   ATCGGTAATGTCAAA            CT-GCCG TTTTTC CGGCGAG             GCCGGTGCCAGGGCC  49 75
        cttP NONE
JJQ57_RS00930 NONE
JJQ57_RS00925 NONE
JJQ57_RS00920 NONE
        aer2 NONE
JJQ57_RS00910 NONE
        cheD NONE
JJQ57_RS00900  201567 ..  201583 - -10.8  -3.68351   TGGCGAGCAGGCAAA              GGCCCG TGGTT CGGGCC              TGTCGTCGGCGGGGT  76 101
        SiaA NONE
        siaB NONE
        siaC NONE
        siaD  197489 ..  197505 -  -9.3  -2.73875   GGCGGCGGAAGACTA              CGGCGCC GAC GGCGTCG              TCCTGACCCTGGAGT  55 133
JJQ57_RS00855  193327 ..  193338 -  -7.2  -4.75404   AAACCCGACGAAAAA                CCCC ATTC GGGG                 ATGAATTCCGCCCGC  86 129
JJQ57_RS00845  190117 ..  190142 -  -8.9  -3.28712   CGCGGTCGGCTACAA         GCAGCACACCG TCAC CGCGGTGCTGC          AGAAGGTCAACGGCA  58 488
JJQ57_RS00760  169800 ..  169847 - -14.8  -2.56715   ATGGGCAGCAAGCGA CATGCCAGGCGGCGCCTACCTG TCAG CAGATAGGCGGCGGCTCGCGTG CTTCTTCCGGCGCTC  74 53
JJQ57_RS00755 NONE
JJQ57_RS00750  168122 ..  168132 -  -8.2  -2.78547   CGAGTGGATCAACGA                 GGGC GAT GCCC                 AGGGGTTCTTCGACC  52 109
        ppk2  164264 ..  164299 - -12.4  -2.71731   GCGACCGTCGAACCA    GGGACGCCCGGAGCGC GAAA GCGCCCCGGGCGTTTT     CGTTGGCGCGACCGC  66 46
        guaD  155697 ..  155710 -  -2.3   -3.5774   AGCCAATGCGGGAAA               GAGGC TCTC ACCCC                TTCGCATGGCGCCGC  49 19
JJQ57_RS00695 NONE
JJQ57_RS00690  152857 ..  152868 -  -7.2  -3.73224   CTAGGGGTGACGAAA                GGGC CGTG GCCC                 TTTCCCTTTACCCGC  65 62
JJQ57_RS00685  151289 ..  151312 - -16.8  -5.93252   CGGAAAAAGAAAAAA          GGCATGGTCG TTAC CGACCATGCC           TGTTGTCGTCAGCCT 100 41
        gabP  149670 ..  149688 - -17.4  -3.61517   ACCTTGCCTGAAGAA             GCCCGGCC ATT GGCCGGGC             TTTTCTTTGGAGGGC 100 69
JJQ57_RS00665  147973 ..  148000 -  -8.2  -2.71144   CAGTGGGTTGAATGA        GGAGCCCGCCCC GAGC GGGGCGGGCGGA         AGGGTGGCGCGGGAT  54 40
JJQ57_RS00660 NONE
        parE  147134 ..  147145 -  -4.4  -4.56597   CGGGTTTCGGAAAAA                TACG GATG CGTA                 TGGGAGCGAAGCATA  72 214
JJQ57_RS00650  145729 ..  145745 -  -2.1  -3.64703   GTCGTGGTATCCAAA              TCCATCG GCA CGGTGGG              CATCCGCAACGCCAC  51 406
JJQ57_RS00610  139613 ..  139641 -    -3  -3.61398   CGCGCCGCTGAACAA        CGCCAAGCTG GAAGCCCAA CTGCCCGGCG        TGCTCAAGCCGCAGG  51 85
JJQ57_RS00580  135007 ..  135019 -  -4.7  -4.09963   CCTGAAGAAGAACAA                GCGCG GCC CGCTC                AAGGCCTGGCTGGCG  62 356
JJQ57_RS00555  129861 ..  129881 -  -2.3  -3.21218   ACCGGCGAGCATGAA            GCCGAGCTG CGC CTGAGCGGC            GCCGCGACTTTCCTC  42 279
JJQ57_RS00505 NONE
        tas1 NONE
        tis1 NONE
JJQ57_RS00490  115943 ..  115986 - -15.5  -3.29461   CAACCTGGTCGAGAA CGATGC-CTCGCTGTCGGTCG GCCA CGACCG-CAACAAGAGCATCG GCCACGACGAGCTGG  80 499
        tagH  101702 ..  101716 -  -3.5  -3.14132   CGTTGGCGTCAGGAA              CGC-CG TAGT CGAGCG               CTGTGTTCCTCGTAG  44 4
        tssJ NONE
        tssK NONE
JJQ57_RS00420 NONE
        tssM   94956 ..   94969 -  -3.1  -2.72144   CGACGCTGTTCAAAG               GCGCTC CGG GAG-GC               TGAAGCCGGACACGA  40 6
        tagF NONE
        pppA   93541 ..   93559 - -12.4  -3.28791   ATGTCCGTCTCAGAA             GGCCCTGA CCA CCAGGGCC             GTGATGTTGTCCGGG  72 1
        ppkA NONE
        tagT NONE
        tagS NONE
        tagR   86773 ..   86801 - -10.2  -3.14132   TCCTGGTTTGATGAA       CCGCCCGGCTGCC GAGA GGT-GCCGGACGG        AACTCCTTCAACGCC  64 33
        tagQ   85786 ..   85805 -   -15  -3.95584   GGCCCATCAACGAAA            CGGCGACC CGAA GGTCGCCG             TCGCGTTCGTGCTGG  89 53
JJQ57_RS00360 NONE
JJQ57_RS00355 NONE
JJQ57_RS00350   79459 ..   79481 -  -6.9  -3.40403   CGGCCGCGAGGAGAA           GCGCCGCGA GCAGT TCACCGCGC           TGGTCCTGGCCAGTC  56 389
JJQ57_RS00340   78182 ..   78198 -  -2.2  -2.78816   TCAGCTCCTAGCATA              GCGC CCTCGCCTT GCGC              CGTTCAGACCTTCGC  39 29
JJQ57_RS00335   77687 ..   77718 -  -3.6   -3.8512   CATCTACCAGAAGAA      CGACG-ACTGAGCCG CTG CGTTTCAGTACGGCG      GGCAGCGGCTGGTCT  56 15
JJQ57_RS00310 NONE
JJQ57_RS00305 NONE
JJQ57_RS00300   72923 ..   72945 -  -2.5  -3.29511   CGTATCGGCGGATAA           CGCTGCGCG TTATG CGCCCTACG           GCTTCCCGATGAGAG  45 52
JJQ57_RS00295   71973 ..   71983 -  -8.2  -3.13403   CCTGGTCGATCAAGA                 GCCG GGA CGGC                 GAGGAGAAGTGGCTG  56 378
JJQ57_RS00275   67191 ..   67214 -  -3.8  -2.94912   CGGCGAAGCGATAGA          TCGCGAGG-GC CTT ACGCCTGGCGA          GGACTAGTCCGCTTG  44 29
JJQ57_RS00270   66133 ..   66149 -  -4.4  -3.28924   GACCTTCCGCCAGAA             CGGC-CT GACC AGCGCCG              GCGACGTGCACCAGG  49 429
JJQ57_RS00245   60995 ..   61007 -  -6.9  -3.50853   GGTCCTGAACCAGAA                GACCG GCA CGGCC                AACCAGAGCGGCTAT  58 383
JJQ57_RS00230   58877 ..   58900 -  -4.6  -2.57344   GACTCGCCCCACAAG          GACCAACTGCA CCT TGTAGT-GGTC          AACCCATCCCGGACA  43 24
        trpB NONE
JJQ57_RS00180   36611 ..   36642 -   -13  -3.17392   CAGCGTGCAACGCAA      GGCCAGGCGCAG CGGGTTGC CTGCGCCTGGCG       AATGCCGCTGTCAGG  73 46
JJQ57_RS00175   35862 ..   35873 -  -2.2  -2.62983   GGGATCCTCAGATCA                GCTCG TGG CG-GC                GGGCGAAATCGATCA  38 6
JJQ57_RS00170   34970 ..   34988 -  -5.8  -3.01712   CGGCCTGCTCGAACA             GGGGCTGC TTT GCCGGCCC             ATTGGCGAGAGCTGC  47 518
        betC NONE
JJQ57_RS00150 NONE
JJQ57_RS00145   29933 ..   29979 - -11.3  -3.02144   CGAGGCGGCCGAACA GGGTGGCGAGCGCAGCGCCGA GGAAA TCGACGAGGCTCGCGCCGCCC TTGGACAGTTGGAGA  62 124
JJQ57_RS00115   23789 ..   23808 -  -4.8  -3.01712   CTTCCTTCTCGAAGA            CCTGCCGG ACGT CTGGCTGG             ACCGCCTGGCCGGTA  45 361
JJQ57_RS00095   20611 ..   20628 - -11.3  -5.45802   TCGCTAAAAGAAAAA             GGCTTGC CGGG GCAAGCC              TTTGGGGGATGGGGT 100 40
         fmt NONE
        rsmB NONE
        trkA NONE
JJQ57_RS00075   16428 ..   16460 -  -4.8  -3.48593   TACGGGTGGAGAGAA     CGCGCTGTACTCCGTC CTG GCCGGGG-A-AGCGCG     AGCCTCGGCCGGACG  53 42
JJQ57_RS00070   15854 ..   15881 - -19.2  -3.16742   GGCAATCTGGAGGAA        GGGCGCAACGGC CGTG ACCGTTGCGCCC         TTCTTCGTTCAGGAG  93 34
        glyQ NONE
JJQ57_RS00040    9939 ..    9965 - -15.1  -4.65895   TCCTGTAGTGAAAAA         GGCCCGGTGTC GCGAG GACGCCGGGCC         TTTTCTTCGAGGCGG 100 48
        gmhB NONE
JJQ57_RS00025    6499 ..    6522 - -18.2  -4.17048   CTCGCGTGAAAACAA          GAAGCCCCGC TATG GCGGGGCTTC           TTTTATCGAATCGGC 100 75
