locus-tag class description Y880_RS00010 PF07733 Bacterial DNA polymerase III alpha NTPase domain Y880_RS00010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Y880_RS00010 PF02811 PHP domain Y880_RS00010 PF14579 Helix-hairpin-helix motif Y880_RS00025 PF01126 Heme oxygenase Y880_RS00050 PF07963 Prokaryotic N-terminal methylation motif Y880_RS00050 PF11612 Type II secretion system (T2SS), protein J Y880_RS00055 PF07963 Prokaryotic N-terminal methylation motif Y880_RS00055 PF12019 Type II transport protein GspH Y880_RS00065 PF02501 Type II secretion system (T2SS), protein I Y880_RS00065 PF07963 Prokaryotic N-terminal methylation motif Y880_RS00070 PF08334 Type II secretion system (T2SS), protein G Y880_RS00070 PF07963 Prokaryotic N-terminal methylation motif Y880_RS00075 PF03934 Type II secretion system (T2SS), protein K Y880_RS00095 PF00437 Type II/IV secretion system protein Y880_RS00105 PF12849 PBP superfamily domain Y880_RS00110 PF12849 PBP superfamily domain Y880_RS00125 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y880_RS00125 PF08479 POTRA domain, ShlB-type Y880_RS00125 PF17287 POTRA domain Y880_RS00135 PF02472 Biopolymer transport protein ExbD/TolR Y880_RS00160 PF00639 PPIC-type PPIASE domain Y880_RS00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS00170 PF03466 LysR substrate binding domain Y880_RS00185 PF07690 Major Facilitator Superfamily Y880_RS00190 PF01425 Amidase Y880_RS00195 PF00535 Glycosyl transferase family 2 Y880_RS00200 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS00205 PF00563 EAL domain Y880_RS00210 PF03466 LysR substrate binding domain Y880_RS00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS00220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS00230 PF09857 Putative toxin of bacterial toxin-antitoxin pair Y880_RS00250 PF00561 alpha/beta hydrolase fold Y880_RS00265 PF01479 S4 domain Y880_RS00265 PF00849 RNA pseudouridylate synthase Y880_RS00310 PF14864 Alkyl sulfatase C-terminal Y880_RS00310 PF14863 Alkyl sulfatase dimerisation Y880_RS00310 PF00753 Metallo-beta-lactamase superfamily Y880_RS00315 PF13460 NAD(P)H-binding Y880_RS00335 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS00340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS00340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS00340 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS00345 PF00171 Aldehyde dehydrogenase family Y880_RS00350 PF12833 Helix-turn-helix domain Y880_RS00350 PF02311 AraC-like ligand binding domain Y880_RS00355 PF04294 VanW like protein Y880_RS00360 PF03167 Uracil DNA glycosylase superfamily Y880_RS00365 PF05145 Transition state regulatory protein AbrB Y880_RS00370 PF01970 Tripartite tricarboxylate transporter TctA family Y880_RS00385 PF03573 outer membrane porin, OprD family Y880_RS00390 PF00486 Transcriptional regulatory protein, C terminal Y880_RS00390 PF00072 Response regulator receiver domain Y880_RS00395 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS00405 PF01571 Aminomethyltransferase folate-binding domain Y880_RS00410 PF03937 Flavinator of succinate dehydrogenase Y880_RS00420 PF00890 FAD binding domain Y880_RS00420 PF02910 Fumarate reductase flavoprotein C-term Y880_RS00425 PF04542 Sigma-70 region 2 Y880_RS00425 PF08281 Sigma-70, region 4 Y880_RS00430 PF03873 Anti sigma-E protein RseA, C-terminal domain Y880_RS00430 PF03872 Anti sigma-E protein RseA, N-terminal domain Y880_RS00435 PF03888 MucB/RseB N-terminal domain Y880_RS00435 PF17188 MucB/RseB C-terminal domain Y880_RS00445 PF13180 PDZ domain Y880_RS00450 PF06421 GTP-binding protein LepA C-terminus Y880_RS00450 PF03144 Elongation factor Tu domain 2 Y880_RS00450 PF00009 Elongation factor Tu GTP binding domain Y880_RS00450 PF00679 Elongation factor G C-terminus Y880_RS00455 PF10502 Signal peptidase, peptidase S26 Y880_RS00465 PF14622 Ribonuclease-III-like Y880_RS00465 PF00035 Double-stranded RNA binding motif Y880_RS00470 PF01926 50S ribosome-binding GTPase Y880_RS00470 PF07650 KH domain Y880_RS00475 PF02565 Recombination protein O C terminal Y880_RS00475 PF11967 Recombination protein O N terminal Y880_RS00480 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Y880_RS00485 PF08003 Protein of unknown function (DUF1698) Y880_RS00490 PF13649 Methyltransferase domain Y880_RS00510 PF02190 ATP-dependent protease La (LON) substrate-binding domain Y880_RS00510 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS00510 PF05362 Lon protease (S16) C-terminal proteolytic domain Y880_RS00515 PF12833 Helix-turn-helix domain Y880_RS00520 PF00593 TonB dependent receptor Y880_RS00520 PF07715 TonB-dependent Receptor Plug Domain Y880_RS00525 PF14850 DNA-binding domain of Proline dehydrogenase Y880_RS00525 PF01619 Proline dehydrogenase Y880_RS00525 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Y880_RS00525 PF00171 Aldehyde dehydrogenase family Y880_RS00530 PF00474 Sodium:solute symporter family Y880_RS00535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS00535 PF03466 LysR substrate binding domain Y880_RS00540 PF02525 Flavodoxin-like fold Y880_RS00545 PF00893 Small Multidrug Resistance protein Y880_RS00565 PF00324 Amino acid permease Y880_RS00580 PF03972 MmgE/PrpD family Y880_RS00585 PF04303 PrpF protein Y880_RS00590 PF00330 Aconitase family (aconitate hydratase) Y880_RS00590 PF00694 Aconitase C-terminal domain Y880_RS00595 PF00285 Citrate synthase, C-terminal domain Y880_RS00605 PF00392 Bacterial regulatory proteins, gntR family Y880_RS00605 PF07729 FCD domain Y880_RS00610 PF08241 Methyltransferase domain Y880_RS00615 PF00176 SNF2 family N-terminal domain Y880_RS00615 PF12419 SNF2 Helicase protein Y880_RS00615 PF00271 Helicase conserved C-terminal domain Y880_RS00640 PF00248 Aldo/keto reductase family Y880_RS00655 PF01510 N-acetylmuramoyl-L-alanine amidase Y880_RS00665 PF01566 Natural resistance-associated macrophage protein Y880_RS00670 PF13419 Haloacid dehalogenase-like hydrolase Y880_RS00685 PF00266 Aminotransferase class-V Y880_RS00695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS00695 PF03466 LysR substrate binding domain Y880_RS00700 PF03466 LysR substrate binding domain Y880_RS00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS00720 PF02796 Helix-turn-helix domain of resolvase Y880_RS00720 PF00239 Resolvase, N terminal domain Y880_RS00820 PF02954 Bacterial regulatory protein, Fis family Y880_RS00820 PF00158 Sigma-54 interaction domain Y880_RS00820 PF00072 Response regulator receiver domain Y880_RS00825 PF04851 Type III restriction enzyme, res subunit Y880_RS00825 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Y880_RS00825 PF00271 Helicase conserved C-terminal domain Y880_RS00825 PF08463 EcoEI R protein C-terminal Y880_RS00835 PF02646 RmuC family Y880_RS00840 PF12161 HsdM N-terminal domain Y880_RS00840 PF02384 N-6 DNA Methylase Y880_RS00870 PF16919 Protein kinase G rubredoxin domain Y880_RS00870 PF00069 Protein kinase domain Y880_RS00870 PF16918 Protein kinase G tetratricopeptide repeat Y880_RS00885 PF08361 MAATS-type transcriptional repressor, C-terminal region Y880_RS00885 PF00440 Bacterial regulatory proteins, tetR family Y880_RS00890 PF00561 alpha/beta hydrolase fold Y880_RS00900 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS00900 PF12833 Helix-turn-helix domain Y880_RS00905 PF00753 Metallo-beta-lactamase superfamily Y880_RS00910 PF00691 OmpA family Y880_RS00910 PF13488 Glycine zipper Y880_RS00915 PF01553 Acyltransferase Y880_RS00920 PF07085 DRTGG domain Y880_RS00920 PF01515 Phosphate acetyl/butaryl transferase Y880_RS00925 PF00871 Acetokinase family Y880_RS00935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y880_RS00940 PF00255 Glutathione peroxidase Y880_RS00945 PF16925 Tetracyclin repressor-like, C-terminal domain Y880_RS00945 PF00440 Bacterial regulatory proteins, tetR family Y880_RS00950 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS00950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS00955 PF02645 Uncharacterised protein, DegV family COG1307 Y880_RS00960 PF13439 Glycosyltransferase Family 4 Y880_RS00960 PF00534 Glycosyl transferases group 1 Y880_RS00970 PF05506 Domain of unknown function (DUF756) Y880_RS00970 PF04185 Phosphoesterase family Y880_RS00975 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal Y880_RS00975 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal Y880_RS00985 PF13426 PAS domain Y880_RS00985 PF08448 PAS fold Y880_RS00985 PF08447 PAS fold Y880_RS00985 PF05231 MASE1 Y880_RS00985 PF00563 EAL domain Y880_RS00985 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS00990 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y880_RS00990 PF00578 AhpC/TSA family Y880_RS00995 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS01005 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS01010 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading Y880_RS01010 PF18416 N-acetylglucosamine binding protein domain 2 Y880_RS01020 PF00206 Lyase Y880_RS01020 PF10415 Fumarase C C-terminus Y880_RS01035 PF01722 BolA-like protein Y880_RS01040 PF17773 UPF0176 acylphosphatase like domain Y880_RS01040 PF00581 Rhodanese-like domain Y880_RS01050 PF00664 ABC transporter transmembrane region Y880_RS01050 PF00005 ABC transporter Y880_RS01055 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS01055 PF00563 EAL domain Y880_RS01055 PF08448 PAS fold Y880_RS01065 PF00550 Phosphopantetheine attachment site Y880_RS01065 PF08659 KR domain Y880_RS01065 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS01065 PF00107 Zinc-binding dehydrogenase Y880_RS01065 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS01065 PF00698 Acyl transferase domain Y880_RS01065 PF14765 Polyketide synthase dehydratase Y880_RS01065 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS01065 PF16197 Ketoacyl-synthetase C-terminal extension Y880_RS01085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS01090 PF00324 Amino acid permease Y880_RS01095 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Y880_RS01100 PF00472 RF-1 domain Y880_RS01105 PF00768 D-alanyl-D-alanine carboxypeptidase Y880_RS01110 PF00155 Aminotransferase class I and II Y880_RS01115 PF01329 Pterin 4 alpha carbinolamine dehydratase Y880_RS01120 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Y880_RS01125 PF18024 Helix-turn-helix domain Y880_RS01125 PF00158 Sigma-54 interaction domain Y880_RS01145 PF04632 Fusaric acid resistance protein family Y880_RS01150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS01150 PF03466 LysR substrate binding domain Y880_RS01155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS01155 PF03466 LysR substrate binding domain Y880_RS01165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS01165 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS01165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS01170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS01175 PF03972 MmgE/PrpD family Y880_RS01180 PF02515 CoA-transferase family III Y880_RS01185 PF03328 HpcH/HpaI aldolase/citrate lyase family Y880_RS01190 PF03480 Bacterial extracellular solute-binding protein, family 7 Y880_RS01195 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Y880_RS01200 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y880_RS01205 PF16177 Acetyl-coenzyme A synthetase N-terminus Y880_RS01205 PF00501 AMP-binding enzyme Y880_RS01205 PF13193 AMP-binding enzyme C-terminal domain Y880_RS01210 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS01220 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS01230 PF00005 ABC transporter Y880_RS01235 PF12833 Helix-turn-helix domain Y880_RS01245 PF00202 Aminotransferase class-III Y880_RS01250 PF04958 Arginine N-succinyltransferase beta subunit Y880_RS01255 PF04958 Arginine N-succinyltransferase beta subunit Y880_RS01260 PF00171 Aldehyde dehydrogenase family Y880_RS01265 PF04996 Succinylarginine dihydrolase Y880_RS01275 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Y880_RS01280 PF01212 Beta-eliminating lyase Y880_RS01285 PF02272 DHHA1 domain Y880_RS01285 PF01411 tRNA synthetases class II (A) Y880_RS01285 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y880_RS01290 PF13840 ACT domain Y880_RS01290 PF00696 Amino acid kinase family Y880_RS01290 PF01842 ACT domain Y880_RS01295 PF02599 Global regulator protein family Y880_RS01315 PF01381 Helix-turn-helix Y880_RS01315 PF00717 Peptidase S24-like Y880_RS01350 PF01769 Divalent cation transporter Y880_RS01350 PF00571 CBS domain Y880_RS01350 PF03448 MgtE intracellular N domain Y880_RS01360 PF07308 Protein of unknown function (DUF1456) Y880_RS01365 PF04055 Radical SAM superfamily Y880_RS01365 PF18693 TRAM domain Y880_RS01365 PF00919 Uncharacterized protein family UPF0004 Y880_RS01375 PF02705 K+ potassium transporter Y880_RS01380 PF01292 Prokaryotic cytochrome b561 Y880_RS01410 PF11798 IMS family HHH motif Y880_RS01410 PF11799 impB/mucB/samB family C-terminal domain Y880_RS01410 PF00817 impB/mucB/samB family Y880_RS01415 PF11893 Domain of unknown function (DUF3413) Y880_RS01415 PF00884 Sulfatase Y880_RS01430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y880_RS01430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y880_RS01435 PF00672 HAMP domain Y880_RS01435 PF00072 Response regulator receiver domain Y880_RS01435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS01435 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS01435 PF01627 Hpt domain Y880_RS01435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y880_RS01440 PF00072 Response regulator receiver domain Y880_RS01440 PF00486 Transcriptional regulatory protein, C terminal Y880_RS01445 PF00672 HAMP domain Y880_RS01445 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS01445 PF16750 Sensor domain of 2-component histidine kinase Y880_RS01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS01455 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS01460 PF05958 tRNA (Uracil-5-)-methyltransferase Y880_RS01465 PF02824 TGS domain Y880_RS01465 PF04607 Region found in RelA / SpoT proteins Y880_RS01465 PF13291 ACT domain Y880_RS01470 PF03819 MazG nucleotide pyrophosphohydrolase domain Y880_RS01480 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Y880_RS01520 PF00551 Formyl transferase Y880_RS01525 PF00586 AIR synthase related protein, N-terminal domain Y880_RS01525 PF02769 AIR synthase related protein, C-terminal domain Y880_RS01540 PF00308 Bacterial dnaA protein Y880_RS01550 PF03358 NADPH-dependent FMN reductase Y880_RS01555 PF03960 ArsC family Y880_RS01560 PF03631 Virulence factor BrkB Y880_RS01575 PF00085 Thioredoxin Y880_RS01580 PF00708 Acylphosphatase Y880_RS01590 PF04073 Aminoacyl-tRNA editing domain Y880_RS01590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y880_RS01590 PF03129 Anticodon binding domain Y880_RS01600 PF03573 outer membrane porin, OprD family Y880_RS01610 PF04102 SlyX Y880_RS01615 PF00313 'Cold-shock' DNA-binding domain Y880_RS01620 PF00210 Ferritin-like domain Y880_RS01625 PF02938 GAD domain Y880_RS01625 PF01336 OB-fold nucleic acid binding domain Y880_RS01625 PF00152 tRNA synthetases class II (D, K and N) Y880_RS01630 PF01709 Transcriptional regulator Y880_RS01635 PF02075 Crossover junction endodeoxyribonuclease RuvC Y880_RS01640 PF01330 RuvA N terminal domain Y880_RS01640 PF07499 RuvA, C-terminal domain Y880_RS01645 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y880_RS01645 PF05491 RuvB C-terminal winged helix domain Y880_RS01645 PF17864 RuvB AAA lid domain Y880_RS01650 PF03061 Thioesterase superfamily Y880_RS01655 PF01618 MotA/TolQ/ExbB proton channel family Y880_RS01660 PF02472 Biopolymer transport protein ExbD/TolR Y880_RS01670 PF04052 TolB amino-terminal domain Y880_RS01670 PF07676 WD40-like Beta Propeller Repeat Y880_RS01675 PF00691 OmpA family Y880_RS01680 PF16331 TolA binding protein trimerisation Y880_RS01680 PF13525 Outer membrane lipoprotein Y880_RS01685 PF04055 Radical SAM superfamily Y880_RS01690 PF06508 Queuosine biosynthesis protein QueC Y880_RS01700 PF00589 Phage integrase family Y880_RS01725 PF00293 NUDIX domain Y880_RS01735 PF00419 Fimbrial protein Y880_RS01740 PF02753 Pili assembly chaperone PapD, C-terminal domain Y880_RS01740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y880_RS01745 PF13954 PapC N-terminal domain Y880_RS01745 PF00577 Outer membrane usher protein Y880_RS01745 PF13953 PapC C-terminal domain Y880_RS01750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y880_RS01750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y880_RS01755 PF13193 AMP-binding enzyme C-terminal domain Y880_RS01755 PF00501 AMP-binding enzyme Y880_RS01765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y880_RS01765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y880_RS01770 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y880_RS01770 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y880_RS01775 PF00753 Metallo-beta-lactamase superfamily Y880_RS01780 PF00425 chorismate binding enzyme Y880_RS01780 PF04715 Anthranilate synthase component I, N terminal region Y880_RS01790 PF03466 LysR substrate binding domain Y880_RS01790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS01795 PF02445 Quinolinate synthetase A protein Y880_RS01800 PF01435 Peptidase family M48 Y880_RS01805 PF01206 Sulfurtransferase TusA Y880_RS01810 PF01594 AI-2E family transporter Y880_RS01815 PF00578 AhpC/TSA family Y880_RS01825 PF00701 Dihydrodipicolinate synthetase family Y880_RS01830 PF06804 NlpB/DapX lipoprotein Y880_RS01835 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Y880_RS01835 PF10996 Beta-Casp domain Y880_RS01835 PF00753 Metallo-beta-lactamase superfamily Y880_RS01840 PF01259 SAICAR synthetase Y880_RS01850 PF00535 Glycosyl transferase family 2 Y880_RS01865 PF00108 Thiolase, N-terminal domain Y880_RS01865 PF02803 Thiolase, C-terminal domain Y880_RS01870 PF13607 Succinyl-CoA ligase like flavodoxin domain Y880_RS01870 PF13380 CoA binding domain Y880_RS01875 PF01575 MaoC like domain Y880_RS01890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS01890 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS01890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS01895 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS01900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS01900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS01900 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS01905 PF00106 short chain dehydrogenase Y880_RS01910 PF03060 Nitronate monooxygenase Y880_RS01915 PF03573 outer membrane porin, OprD family Y880_RS01930 PF00171 Aldehyde dehydrogenase family Y880_RS01935 PF01266 FAD dependent oxidoreductase Y880_RS01950 PF02646 RmuC family Y880_RS01955 PF01804 Penicillin amidase Y880_RS01960 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS01960 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS01965 PF02810 SEC-C motif Y880_RS01965 PF07517 SecA DEAD-like domain Y880_RS01965 PF01043 SecA preprotein cross-linking domain Y880_RS01965 PF07516 SecA Wing and Scaffold domain Y880_RS01980 PF03458 UPF0126 domain Y880_RS01990 PF02810 SEC-C motif Y880_RS02000 PF05736 OprF membrane domain Y880_RS02000 PF00691 OmpA family Y880_RS02020 PF13307 Helicase C-terminal domain Y880_RS02020 PF06733 DEAD_2 Y880_RS02025 PF17992 Agarase CBM like domain Y880_RS02025 PF02449 Beta-galactosidase Y880_RS02030 PF00144 Beta-lactamase Y880_RS02035 PF00223 Photosystem I psaA/psaB protein Y880_RS02035 PF00691 OmpA family Y880_RS02040 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y880_RS02040 PF01243 Pyridoxamine 5'-phosphate oxidase Y880_RS02050 PF02447 GntP family permease Y880_RS02055 PF02595 Glycerate kinase family Y880_RS02065 PF05433 Glycine zipper 2TM domain Y880_RS02070 PF00361 Proton-conducting membrane transporter Y880_RS02070 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y880_RS02070 PF13244 Domain of unknown function (DUF4040) Y880_RS02070 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Y880_RS02075 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y880_RS02080 PF00361 Proton-conducting membrane transporter Y880_RS02085 PF01899 Na+/H+ ion antiporter subunit Y880_RS02090 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Y880_RS02100 PF00892 EamA-like transporter family Y880_RS02105 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS02125 PF04343 Protein of unknown function, DUF488 Y880_RS02135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS02135 PF03466 LysR substrate binding domain Y880_RS02140 PF00183 Hsp90 protein Y880_RS02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS02150 PF00005 ABC transporter Y880_RS02155 PF00005 ABC transporter Y880_RS02155 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y880_RS02160 PF11862 Domain of unknown function (DUF3382) Y880_RS02160 PF02653 Branched-chain amino acid transport system / permease component Y880_RS02165 PF02653 Branched-chain amino acid transport system / permease component Y880_RS02170 PF13458 Periplasmic binding protein Y880_RS02190 PF00460 Flagella basal body rod protein Y880_RS02195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y880_RS02195 PF00460 Flagella basal body rod protein Y880_RS02200 PF13861 FlgD Tudor-like domain Y880_RS02200 PF03963 Flagellar hook capping protein - N-terminal region Y880_RS02200 PF13860 FlgD Ig-like domain Y880_RS02205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y880_RS02205 PF07559 Flagellar basal body protein FlaE Y880_RS02205 PF00460 Flagella basal body rod protein Y880_RS02210 PF00460 Flagella basal body rod protein Y880_RS02210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y880_RS02215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y880_RS02215 PF00460 Flagella basal body rod protein Y880_RS02220 PF02107 Flagellar L-ring protein Y880_RS02225 PF02119 Flagellar P-ring protein Y880_RS02230 PF10135 Rod binding protein Y880_RS02230 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Y880_RS02235 PF00460 Flagella basal body rod protein Y880_RS02235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y880_RS02240 PF00669 Bacterial flagellin N-terminal helical region Y880_RS02245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y880_RS02255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y880_RS02255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y880_RS02290 PF02348 Cytidylyltransferase Y880_RS02300 PF08241 Methyltransferase domain Y880_RS02305 PF00682 HMGL-like Y880_RS02305 PF07836 DmpG-like communication domain Y880_RS02310 PF00535 Glycosyl transferase family 2 Y880_RS02315 PF00669 Bacterial flagellin N-terminal helical region Y880_RS02315 PF00700 Bacterial flagellin C-terminal helical region Y880_RS02325 PF02465 Flagellar hook-associated protein 2 N-terminus Y880_RS02325 PF07195 Flagellar hook-associated protein 2 C-terminus Y880_RS02325 PF07196 Flagellin hook IN motif Y880_RS02330 PF02561 Flagellar protein FliS Y880_RS02335 PF02561 Flagellar protein FliS Y880_RS02345 PF06490 Flagellar regulatory protein FleQ Y880_RS02345 PF00158 Sigma-54 interaction domain Y880_RS02345 PF02954 Bacterial regulatory protein, Fis family Y880_RS02350 PF13188 PAS domain Y880_RS02350 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS02355 PF00158 Sigma-54 interaction domain Y880_RS02355 PF00072 Response regulator receiver domain Y880_RS02355 PF02954 Bacterial regulatory protein, Fis family Y880_RS02360 PF02049 Flagellar hook-basal body complex protein FliE Y880_RS02370 PF14842 FliG N-terminal domain Y880_RS02370 PF01706 FliG C-terminal domain Y880_RS02370 PF14841 FliG middle domain Y880_RS02380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y880_RS02380 PF18269 T3SS EscN ATPase C-terminal domain Y880_RS02385 PF02050 Flagellar FliJ protein Y880_RS02395 PF17151 Periplasmic sensor domain Y880_RS02395 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS02400 PF07690 Major Facilitator Superfamily Y880_RS02405 PF02311 AraC-like ligand binding domain Y880_RS02405 PF12833 Helix-turn-helix domain Y880_RS02420 PF07995 Glucose / Sorbosone dehydrogenase Y880_RS02425 PF09905 DNA-binding protein VF530 Y880_RS02440 PF00005 ABC transporter Y880_RS02440 PF00664 ABC transporter transmembrane region Y880_RS02455 PF17783 CvfB-like winged helix domain Y880_RS02455 PF13509 S1 domain Y880_RS02470 PF00691 OmpA family Y880_RS02475 PF17152 Periplasmic sensor domain Y880_RS02475 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS02480 PF13689 YfiR/HmsC-like Y880_RS02485 PF01327 Polypeptide deformylase Y880_RS02500 PF13286 Phosphohydrolase-associated domain Y880_RS02500 PF01966 HD domain Y880_RS02505 PF02146 Sir2 family Y880_RS02515 PF00248 Aldo/keto reductase family Y880_RS02520 PF03466 LysR substrate binding domain Y880_RS02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS02525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS02535 PF07690 Major Facilitator Superfamily Y880_RS02555 PF01965 DJ-1/PfpI family Y880_RS02560 PF03472 Autoinducer binding domain Y880_RS02560 PF00196 Bacterial regulatory proteins, luxR family Y880_RS02565 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS02565 PF14765 Polyketide synthase dehydratase Y880_RS02565 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS02565 PF08659 KR domain Y880_RS02565 PF00698 Acyl transferase domain Y880_RS02565 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS02565 PF00550 Phosphopantetheine attachment site Y880_RS02565 PF16197 Ketoacyl-synthetase C-terminal extension Y880_RS02580 PF05899 Protein of unknown function (DUF861) Y880_RS02580 PF07883 Cupin domain Y880_RS02585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS02585 PF03466 LysR substrate binding domain Y880_RS02590 PF00392 Bacterial regulatory proteins, gntR family Y880_RS02590 PF07702 UTRA domain Y880_RS02605 PF03466 LysR substrate binding domain Y880_RS02605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS02610 PF00465 Iron-containing alcohol dehydrogenase Y880_RS02615 PF13520 Amino acid permease Y880_RS02630 PF06958 S-type Pyocin Y880_RS02655 PF00268 Ribonucleotide reductase, small chain Y880_RS02660 PF02867 Ribonucleotide reductase, barrel domain Y880_RS02660 PF00317 Ribonucleotide reductase, all-alpha domain Y880_RS02660 PF03477 ATP cone domain Y880_RS02665 PF00486 Transcriptional regulatory protein, C terminal Y880_RS02665 PF00072 Response regulator receiver domain Y880_RS02670 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS02670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS02670 PF00672 HAMP domain Y880_RS02675 PF00313 'Cold-shock' DNA-binding domain Y880_RS02685 PF13847 Methyltransferase domain Y880_RS02690 PF01546 Peptidase family M20/M25/M40 Y880_RS02690 PF07687 Peptidase dimerisation domain Y880_RS02700 PF00899 ThiF family Y880_RS02710 PF01738 Dienelactone hydrolase family Y880_RS02725 PF00305 Lipoxygenase Y880_RS02730 PF03741 Integral membrane protein TerC family Y880_RS02735 PF13406 Transglycosylase SLT domain Y880_RS02740 PF03264 NapC/NirT cytochrome c family, N-terminal region Y880_RS02755 PF03927 NapD protein Y880_RS02765 PF06796 Periplasmic nitrate reductase protein NapE Y880_RS02775 PF00072 Response regulator receiver domain Y880_RS02775 PF00486 Transcriptional regulatory protein, C terminal Y880_RS02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS02785 PF05231 MASE1 Y880_RS02785 PF08448 PAS fold Y880_RS02785 PF08447 PAS fold Y880_RS02785 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS02785 PF00563 EAL domain Y880_RS02785 PF13426 PAS domain Y880_RS02800 PF00375 Sodium:dicarboxylate symporter family Y880_RS02805 PF03466 LysR substrate binding domain Y880_RS02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS02810 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS02810 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS02815 PF00296 Luciferase-like monooxygenase Y880_RS02820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS02820 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS02820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS02825 PF02515 CoA-transferase family III Y880_RS02830 PF10263 SprT-like family Y880_RS02830 PF17283 SprT-like zinc ribbon domain Y880_RS02835 PF04893 Yip1 domain Y880_RS02845 PF01171 PP-loop family Y880_RS02850 PF03352 Methyladenine glycosylase Y880_RS02855 PF13520 Amino acid permease Y880_RS02865 PF02954 Bacterial regulatory protein, Fis family Y880_RS02865 PF13426 PAS domain Y880_RS02865 PF00158 Sigma-54 interaction domain Y880_RS02870 PF02146 Sir2 family Y880_RS02875 PF00877 NlpC/P60 family Y880_RS02880 PF00877 NlpC/P60 family Y880_RS02885 PF01596 O-methyltransferase Y880_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS02890 PF03466 LysR substrate binding domain Y880_RS02895 PF00857 Isochorismatase family Y880_RS02905 PF03358 NADPH-dependent FMN reductase Y880_RS02910 PF02678 Pirin Y880_RS02910 PF05726 Pirin C-terminal cupin domain Y880_RS02920 PF02254 TrkA-N domain Y880_RS02920 PF00999 Sodium/hydrogen exchanger family Y880_RS02925 PF00743 Flavin-binding monooxygenase-like Y880_RS02935 PF17954 Quercetinase C-terminal cupin domain Y880_RS02935 PF02678 Pirin Y880_RS02945 PF07690 Major Facilitator Superfamily Y880_RS02955 PF00733 Asparagine synthase Y880_RS02955 PF13537 Glutamine amidotransferase domain Y880_RS02960 PF13193 AMP-binding enzyme C-terminal domain Y880_RS02960 PF00501 AMP-binding enzyme Y880_RS02970 PF00682 HMGL-like Y880_RS02990 PF00550 Phosphopantetheine attachment site Y880_RS02990 PF13193 AMP-binding enzyme C-terminal domain Y880_RS02990 PF00501 AMP-binding enzyme Y880_RS02990 PF00668 Condensation domain Y880_RS02995 PF06725 3D domain Y880_RS02995 PF03562 MltA specific insert domain Y880_RS03000 PF03466 LysR substrate binding domain Y880_RS03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS03005 PF02525 Flavodoxin-like fold Y880_RS03010 PF02525 Flavodoxin-like fold Y880_RS03030 PF02311 AraC-like ligand binding domain Y880_RS03030 PF12833 Helix-turn-helix domain Y880_RS03040 PF13533 Biotin-lipoyl like Y880_RS03045 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS03045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS03065 PF12833 Helix-turn-helix domain Y880_RS03070 PF07690 Major Facilitator Superfamily Y880_RS03075 PF13533 Biotin-lipoyl like Y880_RS03090 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS03105 PF00072 Response regulator receiver domain Y880_RS03105 PF13426 PAS domain Y880_RS03120 PF00005 ABC transporter Y880_RS03120 PF00664 ABC transporter transmembrane region Y880_RS03125 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS03130 PF02321 Outer membrane efflux protein Y880_RS03145 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Y880_RS03145 PF08548 Peptidase M10 serralysin C terminal Y880_RS03150 PF02974 Protease inhibitor Inh Y880_RS03155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS03155 PF00672 HAMP domain Y880_RS03155 PF12729 Four helix bundle sensory module for signal transduction Y880_RS03160 PF02615 Malate/L-lactate dehydrogenase Y880_RS03165 PF00171 Aldehyde dehydrogenase family Y880_RS03170 PF00701 Dihydrodipicolinate synthetase family Y880_RS03175 PF05544 Proline racemase Y880_RS03180 PF00005 ABC transporter Y880_RS03190 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS03200 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS03210 PF07690 Major Facilitator Superfamily Y880_RS03235 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS03235 PF04324 BFD-like [2Fe-2S] binding domain Y880_RS03240 PF01266 FAD dependent oxidoreductase Y880_RS03245 PF05544 Proline racemase Y880_RS03250 PF00392 Bacterial regulatory proteins, gntR family Y880_RS03250 PF07729 FCD domain Y880_RS03260 PF07715 TonB-dependent Receptor Plug Domain Y880_RS03260 PF00593 TonB dependent receptor Y880_RS03265 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Y880_RS03265 PF12557 Cob(I)alamin adenosyltransferase N terminal Y880_RS03270 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y880_RS03270 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y880_RS03275 PF00881 Nitroreductase family Y880_RS03285 PF00155 Aminotransferase class I and II Y880_RS03290 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y880_RS03290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y880_RS03295 PF00300 Histidine phosphatase superfamily (branch 1) Y880_RS03300 PF02654 Cobalamin-5-phosphate synthase Y880_RS03315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS03315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS03315 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS03315 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y880_RS03330 PF00255 Glutathione peroxidase Y880_RS03335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y880_RS03345 PF00440 Bacterial regulatory proteins, tetR family Y880_RS03355 PF00581 Rhodanese-like domain Y880_RS03365 PF01612 3'-5' exonuclease Y880_RS03365 PF00570 HRDC domain Y880_RS03370 PF05166 YcgL domain Y880_RS03375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y880_RS03380 PF01545 Cation efflux family Y880_RS03385 PF02583 Metal-sensitive transcriptional repressor Y880_RS03390 PF03692 Putative zinc- or iron-chelating domain Y880_RS03400 PF04773 FecR protein Y880_RS03400 PF16220 Domain of unknown function (DUF4880) Y880_RS03405 PF07715 TonB-dependent Receptor Plug Domain Y880_RS03405 PF00593 TonB dependent receptor Y880_RS03410 PF10502 Signal peptidase, peptidase S26 Y880_RS03415 PF00326 Prolyl oligopeptidase family Y880_RS03415 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Y880_RS03430 PF13230 Glutamine amidotransferases class-II Y880_RS03440 PF03466 LysR substrate binding domain Y880_RS03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS03445 PF00266 Aminotransferase class-V Y880_RS03455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS03455 PF03466 LysR substrate binding domain Y880_RS03460 PF07690 Major Facilitator Superfamily Y880_RS03470 PF08361 MAATS-type transcriptional repressor, C-terminal region Y880_RS03470 PF00440 Bacterial regulatory proteins, tetR family Y880_RS03475 PF07690 Major Facilitator Superfamily Y880_RS03485 PF06481 COX Aromatic Rich Motif Y880_RS03485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y880_RS03490 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS03495 PF00510 Cytochrome c oxidase subunit III Y880_RS03500 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Y880_RS03505 PF01040 UbiA prenyltransferase family Y880_RS03510 PF00593 TonB dependent receptor Y880_RS03510 PF07715 TonB-dependent Receptor Plug Domain Y880_RS03525 PF13474 SnoaL-like domain Y880_RS03530 PF00585 C-terminal regulatory domain of Threonine dehydratase Y880_RS03530 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS03540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS03540 PF03466 LysR substrate binding domain Y880_RS03555 PF00571 CBS domain Y880_RS03555 PF03471 Transporter associated domain Y880_RS03555 PF03741 Integral membrane protein TerC family Y880_RS03575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS03585 PF00158 Sigma-54 interaction domain Y880_RS03585 PF00072 Response regulator receiver domain Y880_RS03585 PF02954 Bacterial regulatory protein, Fis family Y880_RS03590 PF02743 Cache domain Y880_RS03590 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS03595 PF17763 Glutaminase/Asparaginase C-terminal domain Y880_RS03595 PF00710 Asparaginase, N-terminal Y880_RS03605 PF00005 ABC transporter Y880_RS03610 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS03615 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS03620 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS03630 PF00106 short chain dehydrogenase Y880_RS03635 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Y880_RS03635 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Y880_RS03640 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y880_RS03640 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y880_RS03640 PF01276 Orn/Lys/Arg decarboxylase, major domain Y880_RS03645 PF00072 Response regulator receiver domain Y880_RS03645 PF00196 Bacterial regulatory proteins, luxR family Y880_RS03655 PF03795 YCII-related domain Y880_RS03665 PF08281 Sigma-70, region 4 Y880_RS03665 PF04542 Sigma-70 region 2 Y880_RS03670 PF07690 Major Facilitator Superfamily Y880_RS03680 PF03795 YCII-related domain Y880_RS03695 PF04073 Aminoacyl-tRNA editing domain Y880_RS03710 PF00892 EamA-like transporter family Y880_RS03735 PF07715 TonB-dependent Receptor Plug Domain Y880_RS03735 PF00593 TonB dependent receptor Y880_RS03740 PF02567 Phenazine biosynthesis-like protein Y880_RS03750 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS03750 PF13192 Thioredoxin domain Y880_RS03755 PF16859 Tetracyclin repressor-like, C-terminal domain Y880_RS03755 PF00440 Bacterial regulatory proteins, tetR family Y880_RS03770 PF00106 short chain dehydrogenase Y880_RS03775 PF00873 AcrB/AcrD/AcrF family Y880_RS03785 PF00440 Bacterial regulatory proteins, tetR family Y880_RS03790 PF02321 Outer membrane efflux protein Y880_RS03810 PF01638 HxlR-like helix-turn-helix Y880_RS03815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y880_RS03815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y880_RS03815 PF11890 Domain of unknown function (DUF3410) Y880_RS03820 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Y880_RS03825 PF00583 Acetyltransferase (GNAT) family Y880_RS03835 PF00106 short chain dehydrogenase Y880_RS03840 PF12833 Helix-turn-helix domain Y880_RS03840 PF06719 AraC-type transcriptional regulator N-terminus Y880_RS03850 PF00263 Bacterial type II and III secretion system protein Y880_RS03850 PF03958 Bacterial type II/III secretion system short domain Y880_RS03860 PF16363 GDP-mannose 4,6 dehydratase Y880_RS03870 PF00005 ABC transporter Y880_RS03885 PF00534 Glycosyl transferases group 1 Y880_RS03890 PF00535 Glycosyl transferase family 2 Y880_RS03895 PF13439 Glycosyltransferase Family 4 Y880_RS03895 PF00534 Glycosyl transferases group 1 Y880_RS03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS03915 PF00072 Response regulator receiver domain Y880_RS03915 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS03915 PF01627 Hpt domain Y880_RS03920 PF00196 Bacterial regulatory proteins, luxR family Y880_RS03920 PF00072 Response regulator receiver domain Y880_RS03925 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS03960 PF03466 LysR substrate binding domain Y880_RS03960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS03965 PF02436 Conserved carboxylase domain Y880_RS03965 PF00682 HMGL-like Y880_RS03965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y880_RS03965 PF02785 Biotin carboxylase C-terminal domain Y880_RS03965 PF00289 Biotin carboxylase, N-terminal domain Y880_RS03965 PF00364 Biotin-requiring enzyme Y880_RS03980 PF00440 Bacterial regulatory proteins, tetR family Y880_RS03990 PF13361 UvrD-like helicase C-terminal domain Y880_RS03990 PF12462 DNA helicase IV / RNA helicase N terminal Y880_RS03990 PF00580 UvrD/REP helicase N-terminal domain Y880_RS04000 PF01170 Putative RNA methylase family UPF0020 Y880_RS04000 PF10672 S-adenosylmethionine-dependent methyltransferase Y880_RS04000 PF02926 THUMP domain Y880_RS04005 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y880_RS04005 PF12795 Mechanosensitive ion channel porin domain Y880_RS04005 PF00924 Mechanosensitive ion channel Y880_RS04015 PF00850 Histone deacetylase domain Y880_RS04020 PF13416 Bacterial extracellular solute-binding protein Y880_RS04025 PF00892 EamA-like transporter family Y880_RS04035 PF03466 LysR substrate binding domain Y880_RS04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS04045 PF00753 Metallo-beta-lactamase superfamily Y880_RS04045 PF16123 Hydroxyacylglutathione hydrolase C-terminus Y880_RS04050 PF02913 FAD linked oxidases, C-terminal domain Y880_RS04050 PF01565 FAD binding domain Y880_RS04060 PF00474 Sodium:solute symporter family Y880_RS04075 PF00491 Arginase family Y880_RS04080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS04080 PF03466 LysR substrate binding domain Y880_RS04085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS04085 PF08447 PAS fold Y880_RS04085 PF13426 PAS domain Y880_RS04100 PF00005 ABC transporter Y880_RS04100 PF12848 ABC transporter Y880_RS04110 PF13673 Acetyltransferase (GNAT) domain Y880_RS04115 PF00689 Cation transporting ATPase, C-terminus Y880_RS04115 PF00690 Cation transporter/ATPase, N-terminus Y880_RS04120 PF00196 Bacterial regulatory proteins, luxR family Y880_RS04120 PF03472 Autoinducer binding domain Y880_RS04130 PF00765 Autoinducer synthase Y880_RS04135 PF03707 Bacterial signalling protein N terminal repeat Y880_RS04135 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS04135 PF00563 EAL domain Y880_RS04135 PF13188 PAS domain Y880_RS04145 PF13533 Biotin-lipoyl like Y880_RS04150 PF00873 AcrB/AcrD/AcrF family Y880_RS04155 PF00072 Response regulator receiver domain Y880_RS04155 PF00486 Transcriptional regulatory protein, C terminal Y880_RS04160 PF00672 HAMP domain Y880_RS04160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS04160 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS04165 PF04304 Protein of unknown function (DUF454) Y880_RS04185 PF02154 Flagellar motor switch protein FliM Y880_RS04185 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y880_RS04190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y880_RS04200 PF00813 FliP family Y880_RS04205 PF01313 Bacterial export proteins, family 3 Y880_RS04210 PF01311 Bacterial export proteins, family 1 Y880_RS04215 PF01312 FlhB HrpN YscU SpaS Family Y880_RS04225 PF04536 TPM domain Y880_RS04230 PF00771 FHIPEP family Y880_RS04235 PF00448 SRP54-type protein, GTPase domain Y880_RS04240 PF10609 NUBPL iron-transfer P-loop NTPase Y880_RS04245 PF04545 Sigma-70, region 4 Y880_RS04245 PF04539 Sigma-70 region 3 Y880_RS04245 PF04542 Sigma-70 region 2 Y880_RS04250 PF00072 Response regulator receiver domain Y880_RS04255 PF04344 Chemotaxis phosphatase, CheZ Y880_RS04265 PF00072 Response regulator receiver domain Y880_RS04265 PF01339 CheB methylesterase Y880_RS04270 PF01618 MotA/TolQ/ExbB proton channel family Y880_RS04275 PF00691 OmpA family Y880_RS04275 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y880_RS04280 PF13614 AAA domain Y880_RS04290 PF01584 CheW-like domain Y880_RS04315 PF02578 Multi-copper polyphenol oxidoreductase laccase Y880_RS04330 PF13302 Acetyltransferase (GNAT) domain Y880_RS04335 PF01312 FlhB HrpN YscU SpaS Family Y880_RS04345 PF00005 ABC transporter Y880_RS04350 PF03379 CcmB protein Y880_RS04355 PF01578 Cytochrome C assembly protein Y880_RS04360 PF04995 Heme exporter protein D (CcmD) Y880_RS04365 PF03100 CcmE Y880_RS04370 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Y880_RS04370 PF01578 Cytochrome C assembly protein Y880_RS04375 PF08534 Redoxin Y880_RS04380 PF03918 Cytochrome C biogenesis protein Y880_RS04395 PF00196 Bacterial regulatory proteins, luxR family Y880_RS04395 PF00072 Response regulator receiver domain Y880_RS04410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y880_RS04410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y880_RS04415 PF04324 BFD-like [2Fe-2S] binding domain Y880_RS04415 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS04420 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS04420 PF04324 BFD-like [2Fe-2S] binding domain Y880_RS04425 PF00455 DeoR C terminal sensor domain Y880_RS04425 PF08220 DeoR-like helix-turn-helix domain Y880_RS04430 PF04346 Ethanolamine utilisation protein, EutH Y880_RS04455 PF00520 Ion transport protein Y880_RS04455 PF00027 Cyclic nucleotide-binding domain Y880_RS04460 PF03253 Urea transporter Y880_RS04465 PF02887 Pyruvate kinase, alpha/beta domain Y880_RS04465 PF00224 Pyruvate kinase, barrel domain Y880_RS04470 PF13660 Domain of unknown function (DUF4147) Y880_RS04470 PF05161 MOFRL family Y880_RS04475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y880_RS04475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y880_RS04480 PF01261 Xylose isomerase-like TIM barrel Y880_RS04485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y880_RS04485 PF00205 Thiamine pyrophosphate enzyme, central domain Y880_RS04485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y880_RS04495 PF08362 YcdC-like protein, C-terminal region Y880_RS04495 PF00440 Bacterial regulatory proteins, tetR family Y880_RS04500 PF06463 Molybdenum Cofactor Synthesis C Y880_RS04500 PF04055 Radical SAM superfamily Y880_RS04510 PF00860 Permease family Y880_RS04530 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) Y880_RS04530 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS04530 PF13296 Putative type VI secretion system Rhs element Vgr Y880_RS04540 PF04115 Ureidoglycolate lyase Y880_RS04545 PF03561 Allantoicase repeat Y880_RS04555 PF01522 Polysaccharide deacetylase Y880_RS04560 PF00576 HIUase/Transthyretin family Y880_RS04565 PF00860 Permease family Y880_RS04580 PF01979 Amidohydrolase family Y880_RS04590 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y880_RS04590 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y880_RS04595 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS04595 PF01799 [2Fe-2S] binding domain Y880_RS04600 PF00487 Fatty acid desaturase Y880_RS04610 PF06470 SMC proteins Flexible Hinge Domain Y880_RS04610 PF02463 RecF/RecN/SMC N terminal domain Y880_RS04615 PF04354 ZipA, C-terminal FtsZ-binding domain Y880_RS04620 PF00533 BRCA1 C Terminus (BRCT) domain Y880_RS04620 PF12826 Helix-hairpin-helix motif Y880_RS04620 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y880_RS04620 PF03120 NAD-dependent DNA ligase OB-fold domain Y880_RS04620 PF01653 NAD-dependent DNA ligase adenylation domain Y880_RS04645 PF00239 Resolvase, N terminal domain Y880_RS04645 PF02796 Helix-turn-helix domain of resolvase Y880_RS04680 PF02575 YbaB/EbfC DNA-binding family Y880_RS04685 PF13662 Toprim domain Y880_RS04685 PF02132 RecR protein Y880_RS04690 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS04690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS04690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS04695 PF03691 Uncharacterised protein family (UPF0167) Y880_RS04700 PF00106 short chain dehydrogenase Y880_RS04705 PF00743 Flavin-binding monooxygenase-like Y880_RS04710 PF00440 Bacterial regulatory proteins, tetR family Y880_RS04715 PF00893 Small Multidrug Resistance protein Y880_RS04720 PF00893 Small Multidrug Resistance protein Y880_RS04730 PF00156 Phosphoribosyl transferase domain Y880_RS04735 PF00325 Bacterial regulatory proteins, crp family Y880_RS04735 PF00027 Cyclic nucleotide-binding domain Y880_RS04745 PF04055 Radical SAM superfamily Y880_RS04745 PF06969 HemN C-terminal domain Y880_RS04760 PF00403 Heavy-metal-associated domain Y880_RS04770 PF12801 4Fe-4S binding domain Y880_RS04770 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Y880_RS04770 PF13746 4Fe-4S dicluster domain Y880_RS04780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS04780 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Y880_RS04795 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS04800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS04800 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Y880_RS04815 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS04830 PF08447 PAS fold Y880_RS04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS04835 PF00330 Aconitase family (aconitate hydratase) Y880_RS04835 PF00694 Aconitase C-terminal domain Y880_RS04840 PF01728 FtsJ-like methyltransferase Y880_RS04840 PF18125 RlmM ferredoxin-like domain Y880_RS04845 PF01206 Sulfurtransferase TusA Y880_RS04850 PF01266 FAD dependent oxidoreductase Y880_RS04855 PF00120 Glutamine synthetase, catalytic domain Y880_RS04865 PF01266 FAD dependent oxidoreductase Y880_RS04870 PF01042 Endoribonuclease L-PSP Y880_RS04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS04885 PF03466 LysR substrate binding domain Y880_RS04900 PF06940 Domain of unknown function (DUF1287) Y880_RS04905 PF06865 Pyrimidine/purine nucleoside phosphorylase Y880_RS04915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y880_RS04915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y880_RS04930 PF03692 Putative zinc- or iron-chelating domain Y880_RS04935 PF01852 START domain Y880_RS04940 PF00285 Citrate synthase, C-terminal domain Y880_RS04945 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y880_RS04950 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y880_RS04955 PF00890 FAD binding domain Y880_RS04955 PF02910 Fumarate reductase flavoprotein C-term Y880_RS04960 PF13085 2Fe-2S iron-sulfur cluster binding domain Y880_RS04965 PF16870 2-oxoglutarate dehydrogenase C-terminal Y880_RS04965 PF02779 Transketolase, pyrimidine binding domain Y880_RS04965 PF00676 Dehydrogenase E1 component Y880_RS04965 PF16078 2-oxoglutarate dehydrogenase N-terminus Y880_RS04975 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS04975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y880_RS04980 PF08442 ATP-grasp domain Y880_RS04980 PF00549 CoA-ligase Y880_RS04985 PF00549 CoA-ligase Y880_RS04985 PF02629 CoA binding domain Y880_RS05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS05020 PF00183 Hsp90 protein Y880_RS05030 PF02548 Ketopantoate hydroxymethyltransferase Y880_RS05035 PF02311 AraC-like ligand binding domain Y880_RS05035 PF12833 Helix-turn-helix domain Y880_RS05040 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y880_RS05040 PF00034 Cytochrome c Y880_RS05040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS05045 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y880_RS05045 PF00034 Cytochrome c Y880_RS05045 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS05050 PF01799 [2Fe-2S] binding domain Y880_RS05050 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS05055 PF12802 MarR family Y880_RS05075 PF01638 HxlR-like helix-turn-helix Y880_RS05080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS05080 PF00672 HAMP domain Y880_RS05080 PF12729 Four helix bundle sensory module for signal transduction Y880_RS05085 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS05085 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS05090 PF07977 FabA-like domain Y880_RS05095 PF01627 Hpt domain Y880_RS05095 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS05095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS05095 PF00672 HAMP domain Y880_RS05095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y880_RS05095 PF00072 Response regulator receiver domain Y880_RS05105 PF07715 TonB-dependent Receptor Plug Domain Y880_RS05105 PF00593 TonB dependent receptor Y880_RS05110 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Y880_RS05110 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Y880_RS05125 PF00501 AMP-binding enzyme Y880_RS05130 PF03061 Thioesterase superfamily Y880_RS05135 PF12833 Helix-turn-helix domain Y880_RS05135 PF02311 AraC-like ligand binding domain Y880_RS05160 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS05160 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS05170 PF01594 AI-2E family transporter Y880_RS05175 PF07690 Major Facilitator Superfamily Y880_RS05180 PF00392 Bacterial regulatory proteins, gntR family Y880_RS05180 PF07729 FCD domain Y880_RS05185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y880_RS05185 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Y880_RS05185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y880_RS05190 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS05195 PF09339 IclR helix-turn-helix domain Y880_RS05200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS05200 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS05200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS05210 PF03814 Potassium-transporting ATPase A subunit Y880_RS05220 PF02669 K+-transporting ATPase, c chain Y880_RS05230 PF00486 Transcriptional regulatory protein, C terminal Y880_RS05230 PF00072 Response regulator receiver domain Y880_RS05235 PF04960 Glutaminase Y880_RS05245 PF01734 Patatin-like phospholipase Y880_RS05255 PF00586 AIR synthase related protein, N-terminal domain Y880_RS05255 PF02769 AIR synthase related protein, C-terminal domain Y880_RS05270 PF01613 Flavin reductase like domain Y880_RS05280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS05280 PF00672 HAMP domain Y880_RS05280 PF16591 Helical bimodular sensor domain Y880_RS05285 PF01740 STAS domain Y880_RS05285 PF00916 Sulfate permease family Y880_RS05295 PF00107 Zinc-binding dehydrogenase Y880_RS05295 PF16884 N-terminal domain of oxidoreductase Y880_RS05310 PF03594 Benzoate membrane transport protein Y880_RS05325 PF00155 Aminotransferase class I and II Y880_RS05330 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS05345 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS05360 PF05947 Type VI secretion system, TssF Y880_RS05370 PF17871 AAA lid domain Y880_RS05370 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS05370 PF07724 AAA domain (Cdc48 subfamily) Y880_RS05370 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS05375 PF00158 Sigma-54 interaction domain Y880_RS05375 PF00072 Response regulator receiver domain Y880_RS05375 PF02954 Bacterial regulatory protein, Fis family Y880_RS05395 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE Y880_RS05405 PF06761 Intracellular multiplication and human macrophage-killing Y880_RS05405 PF06744 Type VI secretion protein IcmF C-terminal Y880_RS05405 PF14331 ImcF-related N-terminal domain Y880_RS05415 PF03793 PASTA domain Y880_RS05415 PF00069 Protein kinase domain Y880_RS05425 PF01814 Hemerythrin HHE cation binding domain Y880_RS05430 PF01227 GTP cyclohydrolase I Y880_RS05435 PF01713 Smr domain Y880_RS05450 PF05175 Methyltransferase small domain Y880_RS05465 PF01264 Chorismate synthase Y880_RS05475 PF00596 Class II Aldolase and Adducin N-terminal domain Y880_RS05480 PF03079 ARD/ARD' family Y880_RS05495 PF00730 HhH-GPD superfamily base excision DNA repair protein Y880_RS05495 PF12833 Helix-turn-helix domain Y880_RS05495 PF06029 AlkA N-terminal domain Y880_RS05495 PF02805 Metal binding domain of Ada Y880_RS05500 PF17284 Spermidine synthase tetramerisation domain Y880_RS05510 PF00884 Sulfatase Y880_RS05510 PF16347 Domain of unknown function (DUF4976) Y880_RS05515 PF01312 FlhB HrpN YscU SpaS Family Y880_RS05520 PF01311 Bacterial export proteins, family 1 Y880_RS05525 PF01313 Bacterial export proteins, family 3 Y880_RS05530 PF00813 FliP family Y880_RS05535 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y880_RS05555 PF18269 T3SS EscN ATPase C-terminal domain Y880_RS05555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y880_RS05555 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y880_RS05560 PF07201 HrpJ-like domain Y880_RS05565 PF09059 TyeA Y880_RS05590 PF09621 Type III secretion system regulator (LcrR) Y880_RS05600 PF04792 V antigen (LcrV) protein Y880_RS05605 PF07720 Tetratricopeptide repeat Y880_RS05620 PF05932 Tir chaperone protein (CesT) family Y880_RS05625 PF18286 Type III secretion system ExsE Y880_RS05630 PF09619 Type III secretion system lipoprotein chaperone (YscW) Y880_RS05635 PF12833 Helix-turn-helix domain Y880_RS05640 PF16806 Antiactivator protein ExsD Y880_RS05645 PF05932 Tir chaperone protein (CesT) family Y880_RS05650 PF00263 Bacterial type II and III secretion system protein Y880_RS05650 PF03958 Bacterial type II/III secretion system short domain Y880_RS05655 PF16693 Inner membrane component of T3SS, periplasmic domain Y880_RS05655 PF16697 Inner membrane component of T3SS, cytoplasmic domain Y880_RS05660 PF08988 Type III secretion system, cytoplasmic E component of needle Y880_RS05665 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF Y880_RS05670 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) Y880_RS05680 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI Y880_RS05685 PF01514 Secretory protein of YscJ/FliF family Y880_RS05690 PF06578 YOP proteins translocation protein K (YscK) Y880_RS05695 PF02108 Flagellar assembly protein FliH Y880_RS05700 PF01915 Glycosyl hydrolase family 3 C-terminal domain Y880_RS05700 PF00933 Glycosyl hydrolase family 3 N terminal domain Y880_RS05700 PF14310 Fibronectin type III-like domain Y880_RS05705 PF00563 EAL domain Y880_RS05705 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS05705 PF03707 Bacterial signalling protein N terminal repeat Y880_RS05715 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Y880_RS05715 PF00117 Glutamine amidotransferase class-I Y880_RS05725 PF14403 Circularly permuted ATP-grasp type 2 Y880_RS05730 PF04168 A predicted alpha-helical domain with a conserved ER motif. Y880_RS05730 PF14403 Circularly permuted ATP-grasp type 2 Y880_RS05735 PF08379 Bacterial transglutaminase-like N-terminal region Y880_RS05735 PF01841 Transglutaminase-like superfamily Y880_RS05755 PF02803 Thiolase, C-terminal domain Y880_RS05755 PF00108 Thiolase, N-terminal domain Y880_RS05760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y880_RS05760 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS05760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y880_RS05765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS05765 PF03466 LysR substrate binding domain Y880_RS05770 PF00248 Aldo/keto reductase family Y880_RS05785 PF02540 NAD synthase Y880_RS05785 PF00117 Glutamine amidotransferase class-I Y880_RS05785 PF00958 GMP synthase C terminal domain Y880_RS05825 PF00793 DAHP synthetase I family Y880_RS05840 PF02558 Ketopantoate reductase PanE/ApbA Y880_RS05840 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y880_RS05850 PF03466 LysR substrate binding domain Y880_RS05850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS05860 PF01507 Phosphoadenosine phosphosulfate reductase family Y880_RS05870 PF00425 chorismate binding enzyme Y880_RS05870 PF04715 Anthranilate synthase component I, N terminal region Y880_RS05875 PF00196 Bacterial regulatory proteins, luxR family Y880_RS05875 PF17874 MalT-like TPR region Y880_RS05880 PF17874 MalT-like TPR region Y880_RS05880 PF00196 Bacterial regulatory proteins, luxR family Y880_RS05925 PF18030 RimK PreATP-grasp domain Y880_RS05925 PF08443 RimK-like ATP-grasp domain Y880_RS05930 PF03618 Kinase/pyrophosphorylase Y880_RS05940 PF00391 PEP-utilising enzyme, mobile domain Y880_RS05940 PF02896 PEP-utilising enzyme, TIM barrel domain Y880_RS05940 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Y880_RS05950 PF03737 Aldolase/RraA Y880_RS05955 PF01544 CorA-like Mg2+ transporter protein Y880_RS05965 PF05552 Conserved TM helix Y880_RS05975 PF05736 OprF membrane domain Y880_RS05975 PF00691 OmpA family Y880_RS05980 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y880_RS05985 PF00384 Molybdopterin oxidoreductase Y880_RS05985 PF01568 Molydopterin dinucleotide binding domain Y880_RS05985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS05985 PF04324 BFD-like [2Fe-2S] binding domain Y880_RS05990 PF00355 Rieske [2Fe-2S] domain Y880_RS05995 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y880_RS05995 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y880_RS05995 PF04324 BFD-like [2Fe-2S] binding domain Y880_RS05995 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS05995 PF18267 Rubredoxin NAD+ reductase C-terminal domain Y880_RS06000 PF03793 PASTA domain Y880_RS06000 PF00069 Protein kinase domain Y880_RS06005 PF07690 Major Facilitator Superfamily Y880_RS06015 PF00072 Response regulator receiver domain Y880_RS06015 PF01339 CheB methylesterase Y880_RS06025 PF11791 Aconitate B N-terminal domain Y880_RS06025 PF06434 Aconitate hydratase 2 N-terminus Y880_RS06025 PF00330 Aconitase family (aconitate hydratase) Y880_RS06040 PF00582 Universal stress protein family Y880_RS06045 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Y880_RS06055 PF00149 Calcineurin-like phosphoesterase Y880_RS06060 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y880_RS06065 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y880_RS06065 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Y880_RS06070 PF09190 DALR domain Y880_RS06070 PF01406 tRNA synthetases class I (C) catalytic domain Y880_RS06075 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Y880_RS06075 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Y880_RS06105 PF00144 Beta-lactamase Y880_RS06110 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS06110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS06110 PF00672 HAMP domain Y880_RS06115 PF00072 Response regulator receiver domain Y880_RS06115 PF00486 Transcriptional regulatory protein, C terminal Y880_RS06125 PF05697 Bacterial trigger factor protein (TF) Y880_RS06125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y880_RS06125 PF05698 Bacterial trigger factor protein (TF) C-terminus Y880_RS06130 PF00574 Clp protease Y880_RS06135 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS06135 PF07724 AAA domain (Cdc48 subfamily) Y880_RS06135 PF06689 ClpX C4-type zinc finger Y880_RS06140 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS06140 PF02190 ATP-dependent protease La (LON) substrate-binding domain Y880_RS06140 PF05362 Lon protease (S16) C-terminal proteolytic domain Y880_RS06145 PF00216 Bacterial DNA-binding protein Y880_RS06155 PF05698 Bacterial trigger factor protein (TF) C-terminus Y880_RS06165 PF00005 ABC transporter Y880_RS06165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y880_RS06170 PF12911 N-terminal TM domain of oligopeptide transport permease C Y880_RS06170 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS06175 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS06180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y880_RS06185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y880_RS06190 PF01464 Transglycosylase SLT domain Y880_RS06190 PF01476 LysM domain Y880_RS06195 PF16123 Hydroxyacylglutathione hydrolase C-terminus Y880_RS06195 PF00753 Metallo-beta-lactamase superfamily Y880_RS06205 PF00075 RNase H Y880_RS06210 PF00929 Exonuclease Y880_RS06220 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y880_RS06220 PF01276 Orn/Lys/Arg decarboxylase, major domain Y880_RS06220 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y880_RS06225 PF13520 Amino acid permease Y880_RS06230 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Y880_RS06235 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS06245 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Y880_RS06245 PF00293 NUDIX domain Y880_RS06245 PF09297 NADH pyrophosphatase zinc ribbon domain Y880_RS06250 PF01925 Sulfite exporter TauE/SafE Y880_RS06255 PF00565 Staphylococcal nuclease homologue Y880_RS06260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS06260 PF03466 LysR substrate binding domain Y880_RS06290 PF01343 Peptidase family S49 Y880_RS06290 PF08496 Peptidase family S49 N-terminal Y880_RS06295 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS06295 PF00107 Zinc-binding dehydrogenase Y880_RS06320 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y880_RS06320 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y880_RS06335 PF04055 Radical SAM superfamily Y880_RS06355 PF00809 Pterin binding enzyme Y880_RS06355 PF02574 Homocysteine S-methyltransferase Y880_RS06355 PF02965 Vitamin B12 dependent methionine synthase, activation domain Y880_RS06355 PF02607 B12 binding domain Y880_RS06355 PF02310 B12 binding domain Y880_RS06375 PF01521 Iron-sulphur cluster biosynthesis Y880_RS06375 PF01106 NifU-like domain Y880_RS06385 PF06906 Protein of unknown function (DUF1272) Y880_RS06390 PF01965 DJ-1/PfpI family Y880_RS06390 PF12833 Helix-turn-helix domain Y880_RS06400 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS06400 PF01590 GAF domain Y880_RS06400 PF00563 EAL domain Y880_RS06400 PF00360 Phytochrome region Y880_RS06410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS06410 PF03466 LysR substrate binding domain Y880_RS06415 PF03448 MgtE intracellular N domain Y880_RS06415 PF01769 Divalent cation transporter Y880_RS06415 PF00571 CBS domain Y880_RS06425 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS06430 PF05661 Protein of unknown function (DUF808) Y880_RS06435 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Y880_RS06440 PF03466 LysR substrate binding domain Y880_RS06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS06445 PF04072 Leucine carboxyl methyltransferase Y880_RS06450 PF00005 ABC transporter Y880_RS06450 PF03459 TOBE domain Y880_RS06455 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS06465 PF00440 Bacterial regulatory proteins, tetR family Y880_RS06465 PF08361 MAATS-type transcriptional repressor, C-terminal region Y880_RS06470 PF18081 Fanconi anemia-associated nuclease SAP domain Y880_RS06470 PF08774 VRR-NUC domain Y880_RS06490 PF03958 Bacterial type II/III secretion system short domain Y880_RS06490 PF00263 Bacterial type II and III secretion system protein Y880_RS06495 PF00550 Phosphopantetheine attachment site Y880_RS06505 PF01551 Peptidase family M23 Y880_RS06530 PF00005 ABC transporter Y880_RS06530 PF00664 ABC transporter transmembrane region Y880_RS06535 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS06535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS06550 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y880_RS06555 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS06555 PF01799 [2Fe-2S] binding domain Y880_RS06560 PF00893 Small Multidrug Resistance protein Y880_RS06565 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y880_RS06580 PF03104 DNA polymerase family B, exonuclease domain Y880_RS06580 PF00136 DNA polymerase family B Y880_RS06600 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS06600 PF13417 Glutathione S-transferase, N-terminal domain Y880_RS06615 PF01804 Penicillin amidase Y880_RS06640 PF00196 Bacterial regulatory proteins, luxR family Y880_RS06640 PF03472 Autoinducer binding domain Y880_RS06645 PF03284 Phenazine biosynthesis protein A/B Y880_RS06650 PF03284 Phenazine biosynthesis protein A/B Y880_RS06655 PF01474 Class-II DAHP synthetase family Y880_RS06660 PF00857 Isochorismatase family Y880_RS06665 PF00117 Glutamine amidotransferase class-I Y880_RS06665 PF00425 chorismate binding enzyme Y880_RS06670 PF02567 Phenazine biosynthesis-like protein Y880_RS06675 PF01243 Pyridoxamine 5'-phosphate oxidase Y880_RS06675 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y880_RS06705 PF03929 PepSY-associated TM region Y880_RS06710 PF00593 TonB dependent receptor Y880_RS06710 PF07715 TonB-dependent Receptor Plug Domain Y880_RS06720 PF04542 Sigma-70 region 2 Y880_RS06720 PF08281 Sigma-70, region 4 Y880_RS06735 PF07905 Purine catabolism regulatory protein-like family Y880_RS06735 PF13556 PucR C-terminal helix-turn-helix domain Y880_RS06750 PF01266 FAD dependent oxidoreductase Y880_RS06765 PF02867 Ribonucleotide reductase, barrel domain Y880_RS06765 PF00317 Ribonucleotide reductase, all-alpha domain Y880_RS06765 PF03477 ATP cone domain Y880_RS06770 PF01795 MraW methylase family Y880_RS06775 PF00593 TonB dependent receptor Y880_RS06775 PF07715 TonB-dependent Receptor Plug Domain Y880_RS06780 PF02514 CobN/Magnesium Chelatase Y880_RS06795 PF18381 YcaO cyclodehydratase C-terminal domain Y880_RS06795 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Y880_RS06800 PF08267 Cobalamin-independent synthase, N-terminal domain Y880_RS06800 PF01717 Cobalamin-independent synthase, Catalytic domain Y880_RS06805 PF13302 Acetyltransferase (GNAT) domain Y880_RS06815 PF08447 PAS fold Y880_RS06815 PF13426 PAS domain Y880_RS06815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS06820 PF10518 TAT (twin-arginine translocation) pathway signal sequence Y880_RS06820 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS06820 PF01799 [2Fe-2S] binding domain Y880_RS06825 PF03450 CO dehydrogenase flavoprotein C-terminal domain Y880_RS06825 PF00941 FAD binding domain in molybdopterin dehydrogenase Y880_RS06830 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y880_RS06830 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y880_RS06855 PF00199 Catalase Y880_RS06880 PF00158 Sigma-54 interaction domain Y880_RS06880 PF00072 Response regulator receiver domain Y880_RS06880 PF02954 Bacterial regulatory protein, Fis family Y880_RS06885 PF13407 Periplasmic binding protein domain Y880_RS06895 PF02653 Branched-chain amino acid transport system / permease component Y880_RS06900 PF00356 Bacterial regulatory proteins, lacI family Y880_RS06905 PF00294 pfkB family carbohydrate kinase Y880_RS06950 PF02673 Bacitracin resistance protein BacA Y880_RS06960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS06960 PF03466 LysR substrate binding domain Y880_RS06965 PF02525 Flavodoxin-like fold Y880_RS06975 PF12848 ABC transporter Y880_RS06975 PF00005 ABC transporter Y880_RS07015 PF05525 Branched-chain amino acid transport protein Y880_RS07020 PF08019 Phosphoethanolamine transferase EptA/EptB Y880_RS07020 PF00884 Sulfatase Y880_RS07040 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS07040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS07040 PF00072 Response regulator receiver domain Y880_RS07040 PF09456 RcsC Alpha-Beta-Loop (ABL) Y880_RS07045 PF00892 EamA-like transporter family Y880_RS07050 PF00072 Response regulator receiver domain Y880_RS07050 PF00196 Bacterial regulatory proteins, luxR family Y880_RS07055 PF05231 MASE1 Y880_RS07055 PF07730 Histidine kinase Y880_RS07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS07060 PF00072 Response regulator receiver domain Y880_RS07060 PF00196 Bacterial regulatory proteins, luxR family Y880_RS07070 PF13360 PQQ-like domain Y880_RS07070 PF01011 PQQ enzyme repeat Y880_RS07075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS07080 PF08042 PqqA family Y880_RS07085 PF12706 Beta-lactamase superfamily domain Y880_RS07090 PF03070 TENA/THI-4/PQQC family Y880_RS07095 PF05402 Coenzyme PQQ synthesis protein D (PqqD) Y880_RS07100 PF04055 Radical SAM superfamily Y880_RS07100 PF13186 Iron-sulfur cluster-binding domain Y880_RS07110 PF00465 Iron-containing alcohol dehydrogenase Y880_RS07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS07115 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS07140 PF00501 AMP-binding enzyme Y880_RS07140 PF13193 AMP-binding enzyme C-terminal domain Y880_RS07145 PF03466 LysR substrate binding domain Y880_RS07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS07150 PF01144 Coenzyme A transferase Y880_RS07155 PF01144 Coenzyme A transferase Y880_RS07160 PF02803 Thiolase, C-terminal domain Y880_RS07160 PF00108 Thiolase, N-terminal domain Y880_RS07165 PF02667 Short chain fatty acid transporter Y880_RS07170 PF00106 short chain dehydrogenase Y880_RS07180 PF02954 Bacterial regulatory protein, Fis family Y880_RS07180 PF00158 Sigma-54 interaction domain Y880_RS07180 PF00989 PAS fold Y880_RS07185 PF07690 Major Facilitator Superfamily Y880_RS07190 PF13417 Glutathione S-transferase, N-terminal domain Y880_RS07195 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y880_RS07200 PF04209 homogentisate 1,2-dioxygenase Y880_RS07210 PF00682 HMGL-like Y880_RS07225 PF01039 Carboxyl transferase domain Y880_RS07230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS07230 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS07230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS07235 PF13411 MerR HTH family regulatory protein Y880_RS07240 PF06977 SdiA-regulated Y880_RS07250 PF00873 AcrB/AcrD/AcrF family Y880_RS07255 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS07255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS07260 PF08361 MAATS-type transcriptional repressor, C-terminal region Y880_RS07260 PF00440 Bacterial regulatory proteins, tetR family Y880_RS07270 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y880_RS07270 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y880_RS07270 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y880_RS07275 PF00483 Nucleotidyl transferase Y880_RS07280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS07285 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS07285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y880_RS07290 PF13593 SBF-like CPA transporter family (DUF4137) Y880_RS07300 PF13404 AsnC-type helix-turn-helix domain Y880_RS07300 PF01037 Lrp/AsnC ligand binding domain Y880_RS07320 PF00155 Aminotransferase class I and II Y880_RS07320 PF00392 Bacterial regulatory proteins, gntR family Y880_RS07325 PF08021 Siderophore-interacting FAD-binding domain Y880_RS07325 PF04954 Siderophore-interacting protein Y880_RS07335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y880_RS07335 PF00205 Thiamine pyrophosphate enzyme, central domain Y880_RS07335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y880_RS07365 PF00324 Amino acid permease Y880_RS07375 PF00375 Sodium:dicarboxylate symporter family Y880_RS07380 PF00849 RNA pseudouridylate synthase Y880_RS07395 PF01809 Putative membrane protein insertion efficiency factor Y880_RS07405 PF06719 AraC-type transcriptional regulator N-terminus Y880_RS07405 PF12833 Helix-turn-helix domain Y880_RS07420 PF04542 Sigma-70 region 2 Y880_RS07420 PF08281 Sigma-70, region 4 Y880_RS07430 PF02560 Cyanate lyase C-terminal domain Y880_RS07435 PF00484 Carbonic anhydrase Y880_RS07440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS07440 PF03466 LysR substrate binding domain Y880_RS07445 PF07690 Major Facilitator Superfamily Y880_RS07450 PF03466 LysR substrate binding domain Y880_RS07450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS07455 PF00593 TonB dependent receptor Y880_RS07455 PF07715 TonB-dependent Receptor Plug Domain Y880_RS07460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y880_RS07465 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS07470 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS07470 PF12911 N-terminal TM domain of oligopeptide transport permease C Y880_RS07490 PF05275 Copper resistance protein B precursor (CopB) Y880_RS07495 PF00394 Multicopper oxidase Y880_RS07495 PF07731 Multicopper oxidase Y880_RS07495 PF07732 Multicopper oxidase Y880_RS07510 PF12832 MFS_1 like family Y880_RS07515 PF02543 Carbamoyltransferase N-terminus Y880_RS07515 PF16861 Carbamoyltransferase C-terminus Y880_RS07525 PF07715 TonB-dependent Receptor Plug Domain Y880_RS07525 PF00593 TonB dependent receptor Y880_RS07530 PF03144 Elongation factor Tu domain 2 Y880_RS07530 PF03764 Elongation factor G, domain IV Y880_RS07530 PF00009 Elongation factor Tu GTP binding domain Y880_RS07530 PF14492 Elongation Factor G, domain II Y880_RS07530 PF00679 Elongation factor G C-terminus Y880_RS07535 PF08448 PAS fold Y880_RS07535 PF00563 EAL domain Y880_RS07535 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS07535 PF08447 PAS fold Y880_RS07540 PF00583 Acetyltransferase (GNAT) family Y880_RS07540 PF00795 Carbon-nitrogen hydrolase Y880_RS07555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS07555 PF03466 LysR substrate binding domain Y880_RS07570 PF00324 Amino acid permease Y880_RS07585 PF04199 Putative cyclase Y880_RS07590 PF01037 Lrp/AsnC ligand binding domain Y880_RS07595 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y880_RS07595 PF00355 Rieske [2Fe-2S] domain Y880_RS07600 PF13537 Glutamine amidotransferase domain Y880_RS07600 PF00733 Asparagine synthase Y880_RS07605 PF00866 Ring hydroxylating beta subunit Y880_RS07610 PF00561 alpha/beta hydrolase fold Y880_RS07645 PF04545 Sigma-70, region 4 Y880_RS07645 PF04542 Sigma-70 region 2 Y880_RS07660 PF12833 Helix-turn-helix domain Y880_RS07660 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS07670 PF00743 Flavin-binding monooxygenase-like Y880_RS07680 PF00106 short chain dehydrogenase Y880_RS07685 PF00392 Bacterial regulatory proteins, gntR family Y880_RS07685 PF00155 Aminotransferase class I and II Y880_RS07690 PF00892 EamA-like transporter family Y880_RS07700 PF00899 ThiF family Y880_RS07700 PF00581 Rhodanese-like domain Y880_RS07705 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS07710 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS07715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y880_RS07715 PF02272 DHHA1 domain Y880_RS07715 PF01411 tRNA synthetases class II (A) Y880_RS07750 PF03573 outer membrane porin, OprD family Y880_RS07755 PF07690 Major Facilitator Superfamily Y880_RS07760 PF03466 LysR substrate binding domain Y880_RS07760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS07765 PF07286 Protein of unknown function (DUF1445) Y880_RS07805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS07805 PF03466 LysR substrate binding domain Y880_RS07815 PF03466 LysR substrate binding domain Y880_RS07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS07820 PF05199 GMC oxidoreductase Y880_RS07820 PF00732 GMC oxidoreductase Y880_RS07825 PF00171 Aldehyde dehydrogenase family Y880_RS07830 PF02195 ParB-like nuclease domain Y880_RS07840 PF01507 Phosphoadenosine phosphosulfate reductase family Y880_RS07840 PF11922 Domain of unknown function (DUF3440) Y880_RS07850 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y880_RS07850 PF02753 Pili assembly chaperone PapD, C-terminal domain Y880_RS07855 PF13953 PapC C-terminal domain Y880_RS07855 PF13954 PapC N-terminal domain Y880_RS07855 PF00577 Outer membrane usher protein Y880_RS07865 PF02753 Pili assembly chaperone PapD, C-terminal domain Y880_RS07865 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y880_RS07885 PF04239 Protein of unknown function (DUF421) Y880_RS07935 PF00343 Carbohydrate phosphorylase Y880_RS07950 PF06628 Catalase-related immune-responsive Y880_RS07950 PF18011 C-terminal domain found in long catalases Y880_RS07950 PF00199 Catalase Y880_RS07960 PF02308 MgtC family Y880_RS07970 PF02735 Ku70/Ku80 beta-barrel domain Y880_RS07975 PF00128 Alpha amylase, catalytic domain Y880_RS07975 PF11896 Domain of unknown function (DUF3416) Y880_RS07980 PF00128 Alpha amylase, catalytic domain Y880_RS07980 PF16657 Maltogenic Amylase, C-terminal domain Y880_RS07985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y880_RS07985 PF00128 Alpha amylase, catalytic domain Y880_RS07985 PF02806 Alpha amylase, C-terminal all-beta domain Y880_RS07990 PF03706 Lysylphosphatidylglycerol synthase TM region Y880_RS07995 PF13091 PLD-like domain Y880_RS08010 PF13823 Alcohol dehydrogenase GroES-associated Y880_RS08010 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS08010 PF00107 Zinc-binding dehydrogenase Y880_RS08035 PF00128 Alpha amylase, catalytic domain Y880_RS08045 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y880_RS08045 PF11941 Domain of unknown function (DUF3459) Y880_RS08045 PF00128 Alpha amylase, catalytic domain Y880_RS08050 PF00534 Glycosyl transferases group 1 Y880_RS08050 PF08323 Starch synthase catalytic domain Y880_RS08090 PF05343 M42 glutamyl aminopeptidase Y880_RS08120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS08120 PF13426 PAS domain Y880_RS08120 PF00072 Response regulator receiver domain Y880_RS08135 PF17827 PrmC N-terminal domain Y880_RS08135 PF05175 Methyltransferase small domain Y880_RS08150 PF04107 Glutamate-cysteine ligase family 2(GCS2) Y880_RS08165 PF03497 Anthrax toxin LF subunit Y880_RS08165 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain Y880_RS08180 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS08180 PF04324 BFD-like [2Fe-2S] binding domain Y880_RS08185 PF01266 FAD dependent oxidoreductase Y880_RS08190 PF00440 Bacterial regulatory proteins, tetR family Y880_RS08190 PF16925 Tetracyclin repressor-like, C-terminal domain Y880_RS08195 PF16884 N-terminal domain of oxidoreductase Y880_RS08195 PF00107 Zinc-binding dehydrogenase Y880_RS08205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y880_RS08205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y880_RS08210 PF03707 Bacterial signalling protein N terminal repeat Y880_RS08210 PF00563 EAL domain Y880_RS08210 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS08220 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS08225 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS08240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS08240 PF03466 LysR substrate binding domain Y880_RS08245 PF01970 Tripartite tricarboxylate transporter TctA family Y880_RS08260 PF07690 Major Facilitator Superfamily Y880_RS08265 PF04909 Amidohydrolase Y880_RS08270 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y880_RS08275 PF03573 outer membrane porin, OprD family Y880_RS08280 PF07690 Major Facilitator Superfamily Y880_RS08285 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y880_RS08285 PF13378 Enolase C-terminal domain-like Y880_RS08295 PF00171 Aldehyde dehydrogenase family Y880_RS08300 PF00171 Aldehyde dehydrogenase family Y880_RS08305 PF04403 Paraquat-inducible protein A Y880_RS08310 PF02470 MlaD protein Y880_RS08320 PF06506 Propionate catabolism activator Y880_RS08320 PF02954 Bacterial regulatory protein, Fis family Y880_RS08320 PF00158 Sigma-54 interaction domain Y880_RS08335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS08335 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS08335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS08345 PF00501 AMP-binding enzyme Y880_RS08345 PF13193 AMP-binding enzyme C-terminal domain Y880_RS08350 PF04341 Protein of unknown function, DUF485 Y880_RS08355 PF00474 Sodium:solute symporter family Y880_RS08370 PF00202 Aminotransferase class-III Y880_RS08375 PF00171 Aldehyde dehydrogenase family Y880_RS08380 PF00324 Amino acid permease Y880_RS08385 PF00465 Iron-containing alcohol dehydrogenase Y880_RS08395 PF00743 Flavin-binding monooxygenase-like Y880_RS08405 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Y880_RS08410 PF01266 FAD dependent oxidoreductase Y880_RS08430 PF03176 MMPL family Y880_RS08435 PF14870 Photosynthesis system II assembly factor YCF48 Y880_RS08440 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Y880_RS08445 PF07905 Purine catabolism regulatory protein-like family Y880_RS08445 PF13556 PucR C-terminal helix-turn-helix domain Y880_RS08445 PF17853 GGDEF-like domain Y880_RS08460 PF12706 Beta-lactamase superfamily domain Y880_RS08475 PF03473 MOSC domain Y880_RS08475 PF03475 3-alpha domain Y880_RS08490 PF02397 Bacterial sugar transferase Y880_RS08495 PF00483 Nucleotidyl transferase Y880_RS08495 PF01050 Mannose-6-phosphate isomerase Y880_RS08500 PF00535 Glycosyl transferase family 2 Y880_RS08505 PF10531 SLBB domain Y880_RS08505 PF18412 Outer-membrane lipoprotein Wza C-terminal domain Y880_RS08505 PF02563 Polysaccharide biosynthesis/export protein Y880_RS08565 PF01037 Lrp/AsnC ligand binding domain Y880_RS08570 PF00676 Dehydrogenase E1 component Y880_RS08570 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Y880_RS08575 PF02780 Transketolase, C-terminal domain Y880_RS08575 PF02779 Transketolase, pyrimidine binding domain Y880_RS08585 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS08585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y880_RS08595 PF01235 Sodium:alanine symporter family Y880_RS08620 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Y880_RS08620 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Y880_RS08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS08630 PF03466 LysR substrate binding domain Y880_RS08635 PF00356 Bacterial regulatory proteins, lacI family Y880_RS08645 PF00294 pfkB family carbohydrate kinase Y880_RS08655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y880_RS08655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y880_RS08660 PF13618 Gluconate 2-dehydrogenase subunit 3 Y880_RS08665 PF00732 GMC oxidoreductase Y880_RS08665 PF05199 GMC oxidoreductase Y880_RS08670 PF00034 Cytochrome c Y880_RS08670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS08680 PF03992 Antibiotic biosynthesis monooxygenase Y880_RS08690 PF00440 Bacterial regulatory proteins, tetR family Y880_RS08695 PF00583 Acetyltransferase (GNAT) family Y880_RS08700 PF03717 Penicillin-binding Protein dimerisation domain Y880_RS08700 PF00905 Penicillin binding protein transpeptidase domain Y880_RS08705 PF00376 MerR family regulatory protein Y880_RS08705 PF09278 MerR, DNA binding Y880_RS08715 PF00107 Zinc-binding dehydrogenase Y880_RS08715 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS08720 PF12833 Helix-turn-helix domain Y880_RS08720 PF06719 AraC-type transcriptional regulator N-terminus Y880_RS08725 PF01022 Bacterial regulatory protein, arsR family Y880_RS08730 PF02040 Arsenical pump membrane protein Y880_RS08735 PF01451 Low molecular weight phosphotyrosine protein phosphatase Y880_RS08740 PF03358 NADPH-dependent FMN reductase Y880_RS08785 PF07715 TonB-dependent Receptor Plug Domain Y880_RS08785 PF00593 TonB dependent receptor Y880_RS08815 PF00005 ABC transporter Y880_RS08820 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS08835 PF02910 Fumarate reductase flavoprotein C-term Y880_RS08835 PF00890 FAD binding domain Y880_RS08840 PF07702 UTRA domain Y880_RS08840 PF00392 Bacterial regulatory proteins, gntR family Y880_RS08845 PF00704 Glycosyl hydrolases family 18 Y880_RS08875 PF01810 LysE type translocator Y880_RS08880 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS08885 PF00005 ABC transporter Y880_RS08895 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y880_RS08905 PF07883 Cupin domain Y880_RS08905 PF01381 Helix-turn-helix Y880_RS08920 PF00144 Beta-lactamase Y880_RS08925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS08925 PF03466 LysR substrate binding domain Y880_RS08930 PF01266 FAD dependent oxidoreductase Y880_RS08940 PF00356 Bacterial regulatory proteins, lacI family Y880_RS08940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y880_RS08950 PF02447 GntP family permease Y880_RS08960 PF00171 Aldehyde dehydrogenase family Y880_RS08970 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS08970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS08975 PF00296 Luciferase-like monooxygenase Y880_RS08980 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS08990 PF00005 ABC transporter Y880_RS09005 PF02311 AraC-like ligand binding domain Y880_RS09005 PF12833 Helix-turn-helix domain Y880_RS09010 PF00884 Sulfatase Y880_RS09010 PF16347 Domain of unknown function (DUF4976) Y880_RS09015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS09015 PF03466 LysR substrate binding domain Y880_RS09020 PF00593 TonB dependent receptor Y880_RS09020 PF07715 TonB-dependent Receptor Plug Domain Y880_RS09040 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS09045 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS09050 PF00005 ABC transporter Y880_RS09050 PF08402 TOBE domain Y880_RS09055 PF01232 Mannitol dehydrogenase Rossmann domain Y880_RS09055 PF08125 Mannitol dehydrogenase C-terminal domain Y880_RS09060 PF00294 pfkB family carbohydrate kinase Y880_RS09075 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS09075 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS09075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS09080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS09080 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS09085 PF00296 Luciferase-like monooxygenase Y880_RS09090 PF03180 NLPA lipoprotein Y880_RS09095 PF00005 ABC transporter Y880_RS09095 PF09383 NIL domain Y880_RS09100 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS09105 PF03009 Glycerophosphoryl diester phosphodiesterase family Y880_RS09110 PF03969 AFG1-like ATPase Y880_RS09115 PF00158 Sigma-54 interaction domain Y880_RS09125 PF00296 Luciferase-like monooxygenase Y880_RS09130 PF03358 NADPH-dependent FMN reductase Y880_RS09140 PF00158 Sigma-54 interaction domain Y880_RS09170 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS09175 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS09200 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS09200 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS09200 PF17871 AAA lid domain Y880_RS09200 PF07724 AAA domain (Cdc48 subfamily) Y880_RS09215 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS09215 PF06715 Gp5 C-terminal repeat (3 copies) Y880_RS09230 PF00196 Bacterial regulatory proteins, luxR family Y880_RS09230 PF00072 Response regulator receiver domain Y880_RS09240 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y880_RS09245 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS09245 PF01799 [2Fe-2S] binding domain Y880_RS09260 PF01070 FMN-dependent dehydrogenase Y880_RS09270 PF03466 LysR substrate binding domain Y880_RS09270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS09275 PF01475 Ferric uptake regulator family Y880_RS09280 PF01804 Penicillin amidase Y880_RS09285 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Y880_RS09300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS09305 PF00005 ABC transporter Y880_RS09305 PF02687 FtsX-like permease family Y880_RS09305 PF12704 MacB-like periplasmic core domain Y880_RS09310 PF02321 Outer membrane efflux protein Y880_RS09335 PF00551 Formyl transferase Y880_RS09345 PF07715 TonB-dependent Receptor Plug Domain Y880_RS09345 PF07660 Secretin and TonB N terminus short domain Y880_RS09345 PF00593 TonB dependent receptor Y880_RS09395 PF00950 ABC 3 transport family Y880_RS09405 PF00975 Thioesterase domain Y880_RS09410 PF03621 MbtH-like protein Y880_RS09415 PF00202 Aminotransferase class-III Y880_RS09420 PF07995 Glucose / Sorbosone dehydrogenase Y880_RS09430 PF01204 Trehalase Y880_RS09435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS09435 PF03466 LysR substrate binding domain Y880_RS09440 PF02678 Pirin Y880_RS09440 PF05726 Pirin C-terminal cupin domain Y880_RS09445 PF00857 Isochorismatase family Y880_RS09450 PF03573 outer membrane porin, OprD family Y880_RS09495 PF03976 Polyphosphate kinase 2 (PPK2) Y880_RS09510 PF04632 Fusaric acid resistance protein family Y880_RS09565 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y880_RS09565 PF01571 Aminomethyltransferase folate-binding domain Y880_RS09570 PF03313 Serine dehydratase alpha chain Y880_RS09570 PF03315 Serine dehydratase beta chain Y880_RS09585 PF02347 Glycine cleavage system P-protein Y880_RS09590 PF01597 Glycine cleavage H-protein Y880_RS09595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS09595 PF03466 LysR substrate binding domain Y880_RS09600 PF07969 Amidohydrolase family Y880_RS09605 PF00158 Sigma-54 interaction domain Y880_RS09605 PF18024 Helix-turn-helix domain Y880_RS09625 PF08241 Methyltransferase domain Y880_RS09675 PF04773 FecR protein Y880_RS09675 PF16220 Domain of unknown function (DUF4880) Y880_RS09680 PF08281 Sigma-70, region 4 Y880_RS09680 PF04542 Sigma-70 region 2 Y880_RS09685 PF03466 LysR substrate binding domain Y880_RS09685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS09690 PF07883 Cupin domain Y880_RS09695 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y880_RS09705 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS09705 PF14497 Glutathione S-transferase, C-terminal domain Y880_RS09715 PF00067 Cytochrome P450 Y880_RS09720 PF13098 Thioredoxin-like domain Y880_RS09725 PF00578 AhpC/TSA family Y880_RS09730 PF11412 Disulphide bond corrector protein DsbC Y880_RS09730 PF02683 Cytochrome C biogenesis protein transmembrane region Y880_RS09735 PF00072 Response regulator receiver domain Y880_RS09735 PF00486 Transcriptional regulatory protein, C terminal Y880_RS09740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS09740 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS09740 PF08521 Two-component sensor kinase N-terminal Y880_RS09745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS09750 PF00034 Cytochrome c Y880_RS09755 PF00296 Luciferase-like monooxygenase Y880_RS09785 PF12833 Helix-turn-helix domain Y880_RS09795 PF08659 KR domain Y880_RS09795 PF00698 Acyl transferase domain Y880_RS09795 PF00550 Phosphopantetheine attachment site Y880_RS09795 PF14765 Polyketide synthase dehydratase Y880_RS09795 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS09795 PF16197 Ketoacyl-synthetase C-terminal extension Y880_RS09795 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS09795 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS09795 PF00107 Zinc-binding dehydrogenase Y880_RS09800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS09800 PF03466 LysR substrate binding domain Y880_RS09805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS09810 PF00873 AcrB/AcrD/AcrF family Y880_RS09820 PF05163 DinB family Y880_RS09835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y880_RS09840 PF07690 Major Facilitator Superfamily Y880_RS09865 PF03573 outer membrane porin, OprD family Y880_RS09875 PF00775 Dioxygenase Y880_RS09875 PF04444 Catechol dioxygenase N terminus Y880_RS09880 PF02426 Muconolactone delta-isomerase Y880_RS09885 PF13378 Enolase C-terminal domain-like Y880_RS09885 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y880_RS09895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS09895 PF03466 LysR substrate binding domain Y880_RS09900 PF12833 Helix-turn-helix domain Y880_RS09900 PF14525 AraC-binding-like domain Y880_RS09910 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y880_RS09910 PF00355 Rieske [2Fe-2S] domain Y880_RS09915 PF00866 Ring hydroxylating beta subunit Y880_RS09920 PF00175 Oxidoreductase NAD-binding domain Y880_RS09920 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS09920 PF00970 Oxidoreductase FAD-binding domain Y880_RS09925 PF00106 short chain dehydrogenase Y880_RS09930 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS09930 PF00175 Oxidoreductase NAD-binding domain Y880_RS09930 PF00970 Oxidoreductase FAD-binding domain Y880_RS09935 PF00866 Ring hydroxylating beta subunit Y880_RS09940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y880_RS09940 PF00355 Rieske [2Fe-2S] domain Y880_RS09945 PF14525 AraC-binding-like domain Y880_RS09945 PF12833 Helix-turn-helix domain Y880_RS09950 PF00873 AcrB/AcrD/AcrF family Y880_RS09955 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS09955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS09960 PF02321 Outer membrane efflux protein Y880_RS09965 PF00486 Transcriptional regulatory protein, C terminal Y880_RS09965 PF00072 Response regulator receiver domain Y880_RS09970 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS09970 PF00672 HAMP domain Y880_RS09970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS09980 PF02321 Outer membrane efflux protein Y880_RS09985 PF00873 AcrB/AcrD/AcrF family Y880_RS09990 PF00873 AcrB/AcrD/AcrF family Y880_RS09995 PF13533 Biotin-lipoyl like Y880_RS10020 PF00155 Aminotransferase class I and II Y880_RS10025 PF08534 Redoxin Y880_RS10030 PF01235 Sodium:alanine symporter family Y880_RS10035 PF03466 LysR substrate binding domain Y880_RS10035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS10040 PF00248 Aldo/keto reductase family Y880_RS10070 PF01066 CDP-alcohol phosphatidyltransferase Y880_RS10080 PF01103 Surface antigen Y880_RS10080 PF17243 POTRA domain TamA domain 1 Y880_RS10080 PF07244 Surface antigen variable number repeat Y880_RS10090 PF03372 Endonuclease/Exonuclease/phosphatase family Y880_RS10095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS10100 PF03466 LysR substrate binding domain Y880_RS10100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS10110 PF03741 Integral membrane protein TerC family Y880_RS10120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS10120 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS10120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS10125 PF03466 LysR substrate binding domain Y880_RS10125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS10130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS10130 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS10130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS10145 PF13193 AMP-binding enzyme C-terminal domain Y880_RS10145 PF00501 AMP-binding enzyme Y880_RS10150 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS10150 PF12833 Helix-turn-helix domain Y880_RS10155 PF00501 AMP-binding enzyme Y880_RS10155 PF13193 AMP-binding enzyme C-terminal domain Y880_RS10160 PF02308 MgtC family Y880_RS10180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS10180 PF00672 HAMP domain Y880_RS10190 PF00916 Sulfate permease family Y880_RS10190 PF01740 STAS domain Y880_RS10195 PF13649 Methyltransferase domain Y880_RS10215 PF00360 Phytochrome region Y880_RS10215 PF01590 GAF domain Y880_RS10215 PF00563 EAL domain Y880_RS10215 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS10230 PF07828 PA-IL-like protein Y880_RS10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS10240 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS10245 PF00072 Response regulator receiver domain Y880_RS10250 PF12729 Four helix bundle sensory module for signal transduction Y880_RS10250 PF00672 HAMP domain Y880_RS10250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS10255 PF00487 Fatty acid desaturase Y880_RS10270 PF01037 Lrp/AsnC ligand binding domain Y880_RS10275 PF00583 Acetyltransferase (GNAT) family Y880_RS10280 PF03301 Tryptophan 2,3-dioxygenase Y880_RS10285 PF02525 Flavodoxin-like fold Y880_RS10305 PF01627 Hpt domain Y880_RS10305 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS10305 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS10305 PF00072 Response regulator receiver domain Y880_RS10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS10315 PF03466 LysR substrate binding domain Y880_RS10325 PF01066 CDP-alcohol phosphatidyltransferase Y880_RS10330 PF02151 UvrB/uvrC motif Y880_RS10330 PF08459 UvrC Helix-hairpin-helix N-terminal Y880_RS10330 PF01541 GIY-YIG catalytic domain Y880_RS10335 PF00072 Response regulator receiver domain Y880_RS10335 PF00196 Bacterial regulatory proteins, luxR family Y880_RS10345 PF01494 FAD binding domain Y880_RS10350 PF12833 Helix-turn-helix domain Y880_RS10350 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS10360 PF00593 TonB dependent receptor Y880_RS10360 PF07715 TonB-dependent Receptor Plug Domain Y880_RS10365 PF00196 Bacterial regulatory proteins, luxR family Y880_RS10365 PF00072 Response regulator receiver domain Y880_RS10370 PF13416 Bacterial extracellular solute-binding protein Y880_RS10380 PF09084 NMT1/THI5 like Y880_RS10390 PF09084 NMT1/THI5 like Y880_RS10395 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS10395 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS10395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS10400 PF00296 Luciferase-like monooxygenase Y880_RS10405 PF09084 NMT1/THI5 like Y880_RS10410 PF00296 Luciferase-like monooxygenase Y880_RS10415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS10415 PF03466 LysR substrate binding domain Y880_RS10420 PF05995 Cysteine dioxygenase type I Y880_RS10435 PF01027 Inhibitor of apoptosis-promoting Bax1 Y880_RS10440 PF02635 DsrE/DsrF-like family Y880_RS10445 PF02635 DsrE/DsrF-like family Y880_RS10450 PF04077 DsrH like protein Y880_RS10455 PF04358 DsrC like protein Y880_RS10460 PF00591 Glycosyl transferase family, a/b domain Y880_RS10460 PF02885 Glycosyl transferase family, helical bundle domain Y880_RS10465 PF13409 Glutathione S-transferase, N-terminal domain Y880_RS10475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y880_RS10475 PF02403 Seryl-tRNA synthetase N-terminal domain Y880_RS10480 PF12002 MgsA AAA+ ATPase C terminal Y880_RS10480 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS10480 PF16193 AAA C-terminal domain Y880_RS10485 PF03548 Outer membrane lipoprotein carrier protein LolA Y880_RS10490 PF17854 FtsK alpha domain Y880_RS10490 PF09397 Ftsk gamma domain Y880_RS10490 PF01580 FtsK/SpoIIIE family Y880_RS10490 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Y880_RS10495 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS10500 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Y880_RS10505 PF04376 Arginine-tRNA-protein transferase, N terminus Y880_RS10505 PF04377 Arginine-tRNA-protein transferase, C terminus Y880_RS10510 PF01176 Translation initiation factor 1A / IF-1 Y880_RS10515 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS10515 PF02861 Clp amino terminal domain, pathogenicity island component Y880_RS10515 PF17871 AAA lid domain Y880_RS10515 PF07724 AAA domain (Cdc48 subfamily) Y880_RS10515 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS10520 PF02617 ATP-dependent Clp protease adaptor protein ClpS Y880_RS10525 PF00313 'Cold-shock' DNA-binding domain Y880_RS10530 PF00180 Isocitrate/isopropylmalate dehydrogenase Y880_RS10535 PF03971 Monomeric isocitrate dehydrogenase Y880_RS10540 PF00293 NUDIX domain Y880_RS10550 PF04356 Protein of unknown function (DUF489) Y880_RS10560 PF00206 Lyase Y880_RS10560 PF08328 Adenylosuccinate lyase C-terminal Y880_RS10565 PF08007 Cupin superfamily protein Y880_RS10570 PF13673 Acetyltransferase (GNAT) domain Y880_RS10590 PF00463 Isocitrate lyase family Y880_RS10605 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y880_RS10610 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y880_RS10615 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Y880_RS10615 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Y880_RS10625 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y880_RS10625 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y880_RS10630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS10630 PF00384 Molybdopterin oxidoreductase Y880_RS10630 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y880_RS10635 PF00146 NADH dehydrogenase Y880_RS10640 PF12838 4Fe-4S dicluster domain Y880_RS10645 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Y880_RS10650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y880_RS10655 PF00361 Proton-conducting membrane transporter Y880_RS10655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y880_RS10660 PF00361 Proton-conducting membrane transporter Y880_RS10665 PF00361 Proton-conducting membrane transporter Y880_RS10670 PF08241 Methyltransferase domain Y880_RS10675 PF01139 tRNA-splicing ligase RtcB Y880_RS10680 PF01594 AI-2E family transporter Y880_RS10685 PF17200 Single Cache domain 2 Y880_RS10685 PF00672 HAMP domain Y880_RS10685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS10690 PF03553 Na+/H+ antiporter family Y880_RS10690 PF13726 Na+-H+ antiporter family Y880_RS10695 PF00672 HAMP domain Y880_RS10695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS10710 PF00486 Transcriptional regulatory protein, C terminal Y880_RS10710 PF00072 Response regulator receiver domain Y880_RS10735 PF17263 Family of unknown function (DUF5329) Y880_RS10750 PF00042 Globin Y880_RS10750 PF00970 Oxidoreductase FAD-binding domain Y880_RS10750 PF00175 Oxidoreductase NAD-binding domain Y880_RS10755 PF00158 Sigma-54 interaction domain Y880_RS10755 PF02954 Bacterial regulatory protein, Fis family Y880_RS10760 PF01242 6-pyruvoyl tetrahydropterin synthase Y880_RS10800 PF07963 Prokaryotic N-terminal methylation motif Y880_RS10800 PF08334 Type II secretion system (T2SS), protein G Y880_RS10805 PF08334 Type II secretion system (T2SS), protein G Y880_RS10805 PF07963 Prokaryotic N-terminal methylation motif Y880_RS10810 PF00482 Type II secretion system (T2SS), protein F Y880_RS10815 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y880_RS10815 PF00437 Type II/IV secretion system protein Y880_RS10820 PF01061 ABC-2 type transporter Y880_RS10830 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS10830 PF00107 Zinc-binding dehydrogenase Y880_RS10835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS10835 PF03466 LysR substrate binding domain Y880_RS10840 PF01738 Dienelactone hydrolase family Y880_RS10845 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS10855 PF03527 RHS protein Y880_RS10855 PF05593 RHS Repeat Y880_RS10860 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS10860 PF06715 Gp5 C-terminal repeat (3 copies) Y880_RS10865 PF00072 Response regulator receiver domain Y880_RS10865 PF00486 Transcriptional regulatory protein, C terminal Y880_RS10870 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS10870 PF16750 Sensor domain of 2-component histidine kinase Y880_RS10870 PF00672 HAMP domain Y880_RS10870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS10875 PF00593 TonB dependent receptor Y880_RS10875 PF07715 TonB-dependent Receptor Plug Domain Y880_RS10885 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS10890 PF02082 Transcriptional regulator Y880_RS10895 PF03061 Thioesterase superfamily Y880_RS10905 PF07759 Protein of unknown function (DUF1615) Y880_RS10910 PF12833 Helix-turn-helix domain Y880_RS10925 PF07969 Amidohydrolase family Y880_RS10930 PF03573 outer membrane porin, OprD family Y880_RS10940 PF18648 Tse2 ADP-ribosyltransferase toxins Y880_RS10955 PF12833 Helix-turn-helix domain Y880_RS10955 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS10970 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS10970 PF17871 AAA lid domain Y880_RS10970 PF02861 Clp amino terminal domain, pathogenicity island component Y880_RS10970 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS10970 PF07724 AAA domain (Cdc48 subfamily) Y880_RS10980 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS10985 PF01810 LysE type translocator Y880_RS10990 PF13416 Bacterial extracellular solute-binding protein Y880_RS11005 PF01638 HxlR-like helix-turn-helix Y880_RS11010 PF01568 Molydopterin dinucleotide binding domain Y880_RS11010 PF00384 Molybdopterin oxidoreductase Y880_RS11010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS11015 PF11953 Domain of unknown function (DUF3470) Y880_RS11015 PF00037 4Fe-4S binding domain Y880_RS11020 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS11020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS11025 PF00561 alpha/beta hydrolase fold Y880_RS11030 PF13411 MerR HTH family regulatory protein Y880_RS11120 PF01420 Type I restriction modification DNA specificity domain Y880_RS11125 PF02384 N-6 DNA Methylase Y880_RS11125 PF12161 HsdM N-terminal domain Y880_RS11130 PF04851 Type III restriction enzyme, res subunit Y880_RS11130 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Y880_RS11130 PF08463 EcoEI R protein C-terminal Y880_RS11130 PF00271 Helicase conserved C-terminal domain Y880_RS11145 PF00216 Bacterial DNA-binding protein Y880_RS11150 PF03483 B3/4 domain Y880_RS11150 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Y880_RS11150 PF03147 Ferredoxin-fold anticodon binding domain Y880_RS11150 PF01588 Putative tRNA binding domain Y880_RS11150 PF03484 tRNA synthetase B5 domain Y880_RS11155 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Y880_RS11155 PF01409 tRNA synthetases class II core domain (F) Y880_RS11160 PF00453 Ribosomal protein L20 Y880_RS11165 PF01632 Ribosomal protein L35 Y880_RS11170 PF00707 Translation initiation factor IF-3, C-terminal domain Y880_RS11170 PF05198 Translation initiation factor IF-3, N-terminal domain Y880_RS11175 PF02824 TGS domain Y880_RS11175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y880_RS11175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y880_RS11175 PF03129 Anticodon binding domain Y880_RS11185 PF00561 alpha/beta hydrolase fold Y880_RS11210 PF00557 Metallopeptidase family M24 Y880_RS11220 PF04231 Endonuclease I Y880_RS11240 PF03631 Virulence factor BrkB Y880_RS11250 PF09335 SNARE associated Golgi protein Y880_RS11275 PF03974 Ecotin Y880_RS11290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS11290 PF03466 LysR substrate binding domain Y880_RS11300 PF03573 outer membrane porin, OprD family Y880_RS11335 PF04261 Dyp-type peroxidase family Y880_RS11355 PF00293 NUDIX domain Y880_RS11360 PF02567 Phenazine biosynthesis-like protein Y880_RS11370 PF03707 Bacterial signalling protein N terminal repeat Y880_RS11370 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS11370 PF00563 EAL domain Y880_RS11395 PF12158 Protein of unknown function (DUF3592) Y880_RS11410 PF01266 FAD dependent oxidoreductase Y880_RS11440 PF03358 NADPH-dependent FMN reductase Y880_RS11460 PF13443 Cro/C1-type HTH DNA-binding domain Y880_RS11470 PF07687 Peptidase dimerisation domain Y880_RS11470 PF01546 Peptidase family M20/M25/M40 Y880_RS11475 PF00672 HAMP domain Y880_RS11475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS11475 PF12729 Four helix bundle sensory module for signal transduction Y880_RS11490 PF13229 Right handed beta helix region Y880_RS11490 PF12708 Pectate lyase superfamily protein Y880_RS11515 PF01207 Dihydrouridine synthase (Dus) Y880_RS11520 PF00923 Transaldolase/Fructose-6-phosphate aldolase Y880_RS11530 PF00072 Response regulator receiver domain Y880_RS11540 PF04333 MlaA lipoprotein Y880_RS11550 PF00392 Bacterial regulatory proteins, gntR family Y880_RS11550 PF07702 UTRA domain Y880_RS11560 PF01966 HD domain Y880_RS11570 PF14489 QueF-like protein Y880_RS11570 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Y880_RS11585 PF00486 Transcriptional regulatory protein, C terminal Y880_RS11585 PF00072 Response regulator receiver domain Y880_RS11590 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS11590 PF00672 HAMP domain Y880_RS11595 PF01061 ABC-2 type transporter Y880_RS11600 PF00005 ABC transporter Y880_RS11605 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS11605 PF13417 Glutathione S-transferase, N-terminal domain Y880_RS11615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS11615 PF09317 Domain of unknown function (DUF1974) Y880_RS11615 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS11615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS11690 PF13614 AAA domain Y880_RS11730 PF01751 Toprim domain Y880_RS11730 PF01131 DNA topoisomerase Y880_RS11735 PF00145 C-5 cytosine-specific DNA methylase Y880_RS11965 PF02203 Tar ligand binding domain homologue Y880_RS11965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS11965 PF00672 HAMP domain Y880_RS11970 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS11980 PF00723 Glycosyl hydrolases family 15 Y880_RS12000 PF02321 Outer membrane efflux protein Y880_RS12005 PF13533 Biotin-lipoyl like Y880_RS12010 PF07690 Major Facilitator Superfamily Y880_RS12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12020 PF03466 LysR substrate binding domain Y880_RS12025 PF03466 LysR substrate binding domain Y880_RS12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12030 PF01381 Helix-turn-helix Y880_RS12045 PF00589 Phage integrase family Y880_RS12045 PF13356 Arm DNA-binding domain Y880_RS12070 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS12070 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS12075 PF13185 GAF domain Y880_RS12080 PF17864 RuvB AAA lid domain Y880_RS12080 PF05491 RuvB C-terminal winged helix domain Y880_RS12080 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y880_RS12085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS12085 PF00072 Response regulator receiver domain Y880_RS12085 PF01627 Hpt domain Y880_RS12085 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS12085 PF00672 HAMP domain Y880_RS12085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y880_RS12090 PF01047 MarR family Y880_RS12095 PF00255 Glutathione peroxidase Y880_RS12100 PF01641 SelR domain Y880_RS12105 PF00155 Aminotransferase class I and II Y880_RS12115 PF01435 Peptidase family M48 Y880_RS12120 PF18027 Cytosolic carboxypeptidase N-terminal domain Y880_RS12120 PF00246 Zinc carboxypeptidase Y880_RS12125 PF05724 Thiopurine S-methyltransferase (TPMT) Y880_RS12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12135 PF03466 LysR substrate binding domain Y880_RS12140 PF07690 Major Facilitator Superfamily Y880_RS12145 PF13533 Biotin-lipoyl like Y880_RS12150 PF02321 Outer membrane efflux protein Y880_RS12155 PF03466 LysR substrate binding domain Y880_RS12155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12160 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y880_RS12170 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS12180 PF01474 Class-II DAHP synthetase family Y880_RS12185 PF06224 Winged helix DNA-binding domain Y880_RS12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12195 PF03466 LysR substrate binding domain Y880_RS12205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12205 PF03466 LysR substrate binding domain Y880_RS12210 PF01047 MarR family Y880_RS12215 PF02566 OsmC-like protein Y880_RS12220 PF01132 Elongation factor P (EF-P) OB domain Y880_RS12220 PF08207 Elongation factor P (EF-P) KOW-like domain Y880_RS12220 PF09285 Elongation factor P, C-terminal Y880_RS12235 PF11839 Alanine-zipper, major outer membrane lipoprotein Y880_RS12240 PF03734 L,D-transpeptidase catalytic domain Y880_RS12240 PF17969 L,D-transpeptidase C-terminal domain Y880_RS12250 PF13472 GDSL-like Lipase/Acylhydrolase family Y880_RS12255 PF00005 ABC transporter Y880_RS12265 PF03449 Transcription elongation factor, N-terminal Y880_RS12265 PF01272 Transcription elongation factor, GreA/GreB, C-term Y880_RS12275 PF02834 LigT like Phosphoesterase Y880_RS12280 PF00561 alpha/beta hydrolase fold Y880_RS12285 PF03280 Proteobacterial lipase chaperone protein Y880_RS12290 PF07681 DoxX Y880_RS12300 PF01026 TatD related DNase Y880_RS12320 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS12335 PF11992 Domain of unknown function (DUF3488) Y880_RS12335 PF01841 Transglutaminase-like superfamily Y880_RS12335 PF13559 Domain of unknown function (DUF4129) Y880_RS12345 PF17863 AAA lid domain Y880_RS12345 PF07726 ATPase family associated with various cellular activities (AAA) Y880_RS12350 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Y880_RS12355 PF03466 LysR substrate binding domain Y880_RS12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12365 PF03466 LysR substrate binding domain Y880_RS12380 PF08448 PAS fold Y880_RS12380 PF13188 PAS domain Y880_RS12380 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS12380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS12380 PF00072 Response regulator receiver domain Y880_RS12395 PF17932 Tetracyclin repressor-like, C-terminal domain Y880_RS12395 PF00440 Bacterial regulatory proteins, tetR family Y880_RS12410 PF01039 Carboxyl transferase domain Y880_RS12415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS12415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS12415 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS12435 PF00501 AMP-binding enzyme Y880_RS12435 PF13193 AMP-binding enzyme C-terminal domain Y880_RS12450 PF04542 Sigma-70 region 2 Y880_RS12450 PF08281 Sigma-70, region 4 Y880_RS12455 PF00155 Aminotransferase class I and II Y880_RS12455 PF00392 Bacterial regulatory proteins, gntR family Y880_RS12465 PF00072 Response regulator receiver domain Y880_RS12465 PF00196 Bacterial regulatory proteins, luxR family Y880_RS12470 PF00691 OmpA family Y880_RS12470 PF05736 OprF membrane domain Y880_RS12485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y880_RS12495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y880_RS12500 PF02570 Precorrin-8X methylmutase Y880_RS12505 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y880_RS12505 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y880_RS12515 PF01888 CbiD Y880_RS12525 PF02659 Putative manganese efflux pump Y880_RS12530 PF07715 TonB-dependent Receptor Plug Domain Y880_RS12530 PF00593 TonB dependent receptor Y880_RS12535 PF00005 ABC transporter Y880_RS12545 PF01032 FecCD transport family Y880_RS12550 PF00753 Metallo-beta-lactamase superfamily Y880_RS12580 PF03466 LysR substrate binding domain Y880_RS12580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12585 PF07687 Peptidase dimerisation domain Y880_RS12585 PF01546 Peptidase family M20/M25/M40 Y880_RS12590 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS12595 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS12600 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS12605 PF00005 ABC transporter Y880_RS12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS12630 PF03466 LysR substrate binding domain Y880_RS12635 PF00440 Bacterial regulatory proteins, tetR family Y880_RS12640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS12645 PF07690 Major Facilitator Superfamily Y880_RS12650 PF00561 alpha/beta hydrolase fold Y880_RS12660 PF01292 Prokaryotic cytochrome b561 Y880_RS12670 PF00860 Permease family Y880_RS12680 PF04389 Peptidase family M28 Y880_RS12680 PF02225 PA domain Y880_RS12685 PF02803 Thiolase, C-terminal domain Y880_RS12685 PF00108 Thiolase, N-terminal domain Y880_RS12700 PF00793 DAHP synthetase I family Y880_RS12710 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y880_RS12710 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y880_RS12725 PF01890 Cobalamin synthesis G C-terminus Y880_RS12725 PF11761 Cobalamin biosynthesis central region Y880_RS12725 PF11760 Cobalamin synthesis G N-terminal Y880_RS12730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y880_RS12735 PF00561 alpha/beta hydrolase fold Y880_RS12740 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Y880_RS12740 PF07055 Enoyl reductase FAD binding domain Y880_RS12740 PF12241 Trans-2-enoyl-CoA reductase catalytic region Y880_RS12745 PF01012 Electron transfer flavoprotein domain Y880_RS12745 PF00766 Electron transfer flavoprotein FAD-binding domain Y880_RS12750 PF01012 Electron transfer flavoprotein domain Y880_RS12775 PF00440 Bacterial regulatory proteins, tetR family Y880_RS12780 PF00266 Aminotransferase class-V Y880_RS12785 PF01026 TatD related DNase Y880_RS12795 PF09115 DNA polymerase III, delta subunit, C terminal Y880_RS12800 PF02223 Thymidylate kinase Y880_RS12805 PF02618 YceG-like family Y880_RS12810 PF01063 Amino-transferase class IV Y880_RS12815 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS12815 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS12820 PF00550 Phosphopantetheine attachment site Y880_RS12830 PF00698 Acyl transferase domain Y880_RS12835 PF02504 Fatty acid synthesis protein Y880_RS12840 PF01783 Ribosomal L32p protein family Y880_RS12845 PF02620 Large ribosomal RNA subunit accumulation protein YceD Y880_RS12850 PF02545 Maf-like protein Y880_RS12855 PF01343 Peptidase family S49 Y880_RS12855 PF06965 Na+/H+ antiporter 1 Y880_RS12860 PF13419 Haloacid dehalogenase-like hydrolase Y880_RS12865 PF01479 S4 domain Y880_RS12865 PF00849 RNA pseudouridylate synthase Y880_RS12885 PF01451 Low molecular weight phosphotyrosine protein phosphatase Y880_RS12890 PF02348 Cytidylyltransferase Y880_RS12895 PF03966 Trm112p-like protein Y880_RS12900 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Y880_RS12905 PF02472 Biopolymer transport protein ExbD/TolR Y880_RS12910 PF01618 MotA/TolQ/ExbB proton channel family Y880_RS12925 PF12704 MacB-like periplasmic core domain Y880_RS12925 PF02687 FtsX-like permease family Y880_RS12930 PF00005 ABC transporter Y880_RS12935 PF12704 MacB-like periplasmic core domain Y880_RS12935 PF02687 FtsX-like permease family Y880_RS12950 PF03009 Glycerophosphoryl diester phosphodiesterase family Y880_RS12955 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS12955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y880_RS12965 PF02424 ApbE family Y880_RS12970 PF00970 Oxidoreductase FAD-binding domain Y880_RS12970 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS12970 PF00175 Oxidoreductase NAD-binding domain Y880_RS12975 PF02508 Rnf-Nqr subunit, membrane protein Y880_RS12980 PF02508 Rnf-Nqr subunit, membrane protein Y880_RS12985 PF04205 FMN-binding domain Y880_RS12990 PF03116 NQR2, RnfD, RnfE family Y880_RS12995 PF11973 NQRA C-terminal domain Y880_RS12995 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Y880_RS13000 PF00324 Amino acid permease Y880_RS13005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y880_RS13005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y880_RS13010 PF17757 UvrB interaction domain Y880_RS13010 PF02559 CarD-like/TRCF domain Y880_RS13010 PF03461 TRCF domain Y880_RS13010 PF00271 Helicase conserved C-terminal domain Y880_RS13010 PF00270 DEAD/DEAH box helicase Y880_RS13020 PF01048 Phosphorylase superfamily Y880_RS13025 PF00933 Glycosyl hydrolase family 3 N terminal domain Y880_RS13030 PF00440 Bacterial regulatory proteins, tetR family Y880_RS13035 PF00717 Peptidase S24-like Y880_RS13035 PF01726 LexA DNA binding domain Y880_RS13040 PF03846 Cell division inhibitor SulA Y880_RS13055 PF08272 Topoisomerase I zinc-ribbon-like Y880_RS13055 PF01131 DNA topoisomerase Y880_RS13055 PF01751 Toprim domain Y880_RS13055 PF01396 Topoisomerase DNA binding C4 zinc finger Y880_RS13065 PF02803 Thiolase, C-terminal domain Y880_RS13065 PF00108 Thiolase, N-terminal domain Y880_RS13070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y880_RS13070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y880_RS13070 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS13090 PF00582 Universal stress protein family Y880_RS13100 PF12848 ABC transporter Y880_RS13100 PF16326 ABC transporter C-terminal domain Y880_RS13100 PF00005 ABC transporter Y880_RS13105 PF14718 Soluble lytic murein transglycosylase L domain Y880_RS13105 PF01464 Transglycosylase SLT domain Y880_RS13125 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y880_RS13125 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y880_RS13130 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Y880_RS13130 PF01266 FAD dependent oxidoreductase Y880_RS13145 PF03454 MoeA C-terminal region (domain IV) Y880_RS13145 PF03453 MoeA N-terminal region (domain I and II) Y880_RS13145 PF00994 Probable molybdopterin binding domain Y880_RS13150 PF00994 Probable molybdopterin binding domain Y880_RS13155 PF12804 MobA-like NTP transferase domain Y880_RS13180 PF00440 Bacterial regulatory proteins, tetR family Y880_RS13185 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS13195 PF00753 Metallo-beta-lactamase superfamily Y880_RS13195 PF16123 Hydroxyacylglutathione hydrolase C-terminus Y880_RS13200 PF03573 outer membrane porin, OprD family Y880_RS13205 PF00909 Ammonium Transporter Family Y880_RS13225 PF01966 HD domain Y880_RS13230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS13230 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS13230 PF01627 Hpt domain Y880_RS13230 PF00989 PAS fold Y880_RS13230 PF00072 Response regulator receiver domain Y880_RS13230 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS13235 PF00196 Bacterial regulatory proteins, luxR family Y880_RS13235 PF00072 Response regulator receiver domain Y880_RS13240 PF04320 Protein with unknown function (DUF469) Y880_RS13245 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Y880_RS13250 PF01170 Putative RNA methylase family UPF0020 Y880_RS13250 PF02926 THUMP domain Y880_RS13250 PF10672 S-adenosylmethionine-dependent methyltransferase Y880_RS13260 PF04957 Ribosome modulation factor Y880_RS13265 PF01180 Dihydroorotate dehydrogenase Y880_RS13280 PF00561 alpha/beta hydrolase fold Y880_RS13310 PF00534 Glycosyl transferases group 1 Y880_RS13310 PF13439 Glycosyltransferase Family 4 Y880_RS13335 PF03537 Glycoside-hydrolase family GH114 Y880_RS13340 PF05088 Bacterial NAD-glutamate dehydrogenase Y880_RS13350 PF17863 AAA lid domain Y880_RS13350 PF07726 ATPase family associated with various cellular activities (AAA) Y880_RS13355 PF01882 Protein of unknown function DUF58 Y880_RS13390 PF00072 Response regulator receiver domain Y880_RS13390 PF00486 Transcriptional regulatory protein, C terminal Y880_RS13395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS13395 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS13410 PF07044 Protein of unknown function (DUF1329) Y880_RS13425 PF01433 Peptidase family M1 domain Y880_RS13425 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Y880_RS13425 PF11940 Domain of unknown function (DUF3458) Ig-like fold Y880_RS13435 PF07023 Protein of unknown function (DUF1315) Y880_RS13440 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease Y880_RS13440 PF01694 Rhomboid family Y880_RS13445 PF00149 Calcineurin-like phosphoesterase Y880_RS13450 PF01513 ATP-NAD kinase Y880_RS13470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS13470 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS13480 PF12833 Helix-turn-helix domain Y880_RS13480 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS13505 PF12693 GspL periplasmic domain Y880_RS13505 PF05134 Type II secretion system (T2SS), protein L Y880_RS13510 PF03934 Type II secretion system (T2SS), protein K Y880_RS13515 PF07963 Prokaryotic N-terminal methylation motif Y880_RS13515 PF11612 Type II secretion system (T2SS), protein J Y880_RS13520 PF07963 Prokaryotic N-terminal methylation motif Y880_RS13520 PF02501 Type II secretion system (T2SS), protein I Y880_RS13525 PF12019 Type II transport protein GspH Y880_RS13525 PF07963 Prokaryotic N-terminal methylation motif Y880_RS13530 PF07963 Prokaryotic N-terminal methylation motif Y880_RS13530 PF08334 Type II secretion system (T2SS), protein G Y880_RS13535 PF00482 Type II secretion system (T2SS), protein F Y880_RS13540 PF00437 Type II/IV secretion system protein Y880_RS13545 PF11356 Type II secretion system protein C Y880_RS13550 PF03958 Bacterial type II/III secretion system short domain Y880_RS13550 PF00263 Bacterial type II and III secretion system protein Y880_RS13560 PF01053 Cys/Met metabolism PLP-dependent enzyme Y880_RS13565 PF00156 Phosphoribosyl transferase domain Y880_RS13570 PF02674 Colicin V production protein Y880_RS13580 PF02875 Mur ligase family, glutamate ligase domain Y880_RS13580 PF08245 Mur ligase middle domain Y880_RS13585 PF01039 Carboxyl transferase domain Y880_RS13585 PF17848 Acetyl-coA carboxylase zinc finger domain Y880_RS13590 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Y880_RS13595 PF01416 tRNA pseudouridine synthase Y880_RS13605 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y880_RS13605 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y880_RS13610 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y880_RS13610 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y880_RS13615 PF00180 Isocitrate/isopropylmalate dehydrogenase Y880_RS13620 PF08241 Methyltransferase domain Y880_RS13625 PF00694 Aconitase C-terminal domain Y880_RS13630 PF00330 Aconitase family (aconitate hydratase) Y880_RS13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS13640 PF01042 Endoribonuclease L-PSP Y880_RS13645 PF03466 LysR substrate binding domain Y880_RS13645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS13655 PF00011 Hsp20/alpha crystallin family Y880_RS13660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS13670 PF01207 Dihydrouridine synthase (Dus) Y880_RS13680 PF01081 KDPG and KHG aldolase Y880_RS13685 PF00561 alpha/beta hydrolase fold Y880_RS13720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS13720 PF03466 LysR substrate binding domain Y880_RS13725 PF13533 Biotin-lipoyl like Y880_RS13730 PF07690 Major Facilitator Superfamily Y880_RS13735 PF00271 Helicase conserved C-terminal domain Y880_RS13735 PF17757 UvrB interaction domain Y880_RS13735 PF12344 Ultra-violet resistance protein B Y880_RS13735 PF02151 UvrB/uvrC motif Y880_RS13735 PF04851 Type III restriction enzyme, res subunit Y880_RS13740 PF00155 Aminotransferase class I and II Y880_RS13755 PF02719 Polysaccharide biosynthesis protein Y880_RS13760 PF00953 Glycosyl transferase family 4 Y880_RS13765 PF01370 NAD dependent epimerase/dehydratase family Y880_RS13770 PF00534 Glycosyl transferases group 1 Y880_RS13770 PF13477 Glycosyl transferase 4-like Y880_RS13775 PF13439 Glycosyltransferase Family 4 Y880_RS13775 PF00534 Glycosyl transferases group 1 Y880_RS13780 PF13537 Glutamine amidotransferase domain Y880_RS13780 PF00733 Asparagine synthase Y880_RS13795 PF01370 NAD dependent epimerase/dehydratase family Y880_RS13800 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y880_RS13800 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y880_RS13800 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y880_RS13815 PF00216 Bacterial DNA-binding protein Y880_RS13820 PF00575 S1 RNA binding domain Y880_RS13825 PF02224 Cytidylate kinase Y880_RS13830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y880_RS13835 PF00155 Aminotransferase class I and II Y880_RS13840 PF01817 Chorismate mutase type II Y880_RS13840 PF00800 Prephenate dehydratase Y880_RS13840 PF01842 ACT domain Y880_RS13845 PF00266 Aminotransferase class-V Y880_RS13850 PF00521 DNA gyrase/topoisomerase IV, subunit A Y880_RS13850 PF03989 DNA gyrase C-terminal domain, beta-propeller Y880_RS13855 PF01008 Initiation factor 2 subunit family Y880_RS13860 PF01979 Amidohydrolase family Y880_RS13870 PF13419 Haloacid dehalogenase-like hydrolase Y880_RS13875 PF00106 short chain dehydrogenase Y880_RS13885 PF00491 Arginase family Y880_RS13895 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS13915 PF01081 KDPG and KHG aldolase Y880_RS13925 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y880_RS13925 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y880_RS13930 PF01380 SIS domain Y880_RS13930 PF01418 Helix-turn-helix domain, rpiR family Y880_RS13935 PF01263 Aldose 1-epimerase Y880_RS13950 PF00005 ABC transporter Y880_RS13950 PF17912 MalK OB fold domain Y880_RS13955 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS13960 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS13965 PF01547 Bacterial extracellular solute-binding protein Y880_RS13975 PF00672 HAMP domain Y880_RS13975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS13975 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS13980 PF00072 Response regulator receiver domain Y880_RS13980 PF00486 Transcriptional regulatory protein, C terminal Y880_RS13985 PF02685 Glucokinase Y880_RS13990 PF00920 Dehydratase family Y880_RS13995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y880_RS13995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y880_RS14010 PF04079 Segregation and condensation complex subunit ScpB Y880_RS14015 PF02616 Segregation and condensation protein ScpA Y880_RS14020 PF01300 Telomere recombination Y880_RS14030 PF04279 Intracellular septation protein A Y880_RS14035 PF03795 YCII-related domain Y880_RS14045 PF00486 Transcriptional regulatory protein, C terminal Y880_RS14045 PF00072 Response regulator receiver domain Y880_RS14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS14055 PF00672 HAMP domain Y880_RS14055 PF16750 Sensor domain of 2-component histidine kinase Y880_RS14055 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS14065 PF00881 Nitroreductase family Y880_RS14070 PF03692 Putative zinc- or iron-chelating domain Y880_RS14075 PF02386 Cation transport protein Y880_RS14080 PF02405 Permease MlaE Y880_RS14085 PF00005 ABC transporter Y880_RS14100 PF12833 Helix-turn-helix domain Y880_RS14100 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS14110 PF00211 Adenylate and Guanylate cyclase catalytic domain Y880_RS14115 PF00534 Glycosyl transferases group 1 Y880_RS14115 PF13439 Glycosyltransferase Family 4 Y880_RS14125 PF12833 Helix-turn-helix domain Y880_RS14130 PF01588 Putative tRNA binding domain Y880_RS14140 PF02525 Flavodoxin-like fold Y880_RS14155 PF00561 alpha/beta hydrolase fold Y880_RS14160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y880_RS14165 PF00664 ABC transporter transmembrane region Y880_RS14165 PF00005 ABC transporter Y880_RS14195 PF00474 Sodium:solute symporter family Y880_RS14200 PF04341 Protein of unknown function, DUF485 Y880_RS14205 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y880_RS14220 PF04333 MlaA lipoprotein Y880_RS14225 PF02678 Pirin Y880_RS14225 PF05726 Pirin C-terminal cupin domain Y880_RS14235 PF03279 Bacterial lipid A biosynthesis acyltransferase Y880_RS14240 PF03775 Septum formation inhibitor MinC, C-terminal domain Y880_RS14240 PF05209 Septum formation inhibitor MinC, N-terminal domain Y880_RS14245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y880_RS14250 PF03776 Septum formation topological specificity factor MinE Y880_RS14255 PF00849 RNA pseudouridylate synthase Y880_RS14260 PF02127 Aminopeptidase I zinc metalloprotease (M18) Y880_RS14265 PF13302 Acetyltransferase (GNAT) domain Y880_RS14270 PF00392 Bacterial regulatory proteins, gntR family Y880_RS14270 PF07702 UTRA domain Y880_RS14285 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS14295 PF00005 ABC transporter Y880_RS14295 PF08402 TOBE domain Y880_RS14300 PF18429 Domain of unknown function (DUF5609) Y880_RS14305 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS14305 PF16197 Ketoacyl-synthetase C-terminal extension Y880_RS14305 PF00698 Acyl transferase domain Y880_RS14305 PF14765 Polyketide synthase dehydratase Y880_RS14305 PF08659 KR domain Y880_RS14305 PF00550 Phosphopantetheine attachment site Y880_RS14305 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS14305 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS14310 PF11818 C-terminal domain of tail specific protease (DUF3340) Y880_RS14310 PF17804 Tail specific protease N-terminal domain Y880_RS14310 PF03572 Peptidase family S41 Y880_RS14310 PF00595 PDZ domain Y880_RS14315 PF17153 Periplasmic sensor domain, extracellular Y880_RS14315 PF00563 EAL domain Y880_RS14345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y880_RS14345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y880_RS14360 PF04381 Putative exonuclease, RdgC Y880_RS14365 PF01758 Sodium Bile acid symporter family Y880_RS14370 PF00893 Small Multidrug Resistance protein Y880_RS14375 PF00313 'Cold-shock' DNA-binding domain Y880_RS14380 PF07690 Major Facilitator Superfamily Y880_RS14385 PF00593 TonB dependent receptor Y880_RS14385 PF07660 Secretin and TonB N terminus short domain Y880_RS14385 PF07715 TonB-dependent Receptor Plug Domain Y880_RS14390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS14390 PF12833 Helix-turn-helix domain Y880_RS14400 PF09456 RcsC Alpha-Beta-Loop (ABL) Y880_RS14400 PF00072 Response regulator receiver domain Y880_RS14400 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS14420 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Y880_RS14430 PF00561 alpha/beta hydrolase fold Y880_RS14430 PF00106 short chain dehydrogenase Y880_RS14440 PF07396 Phosphate-selective porin O and P Y880_RS14450 PF07396 Phosphate-selective porin O and P Y880_RS14465 PF05114 Protein of unknown function (DUF692) Y880_RS14480 PF08281 Sigma-70, region 4 Y880_RS14480 PF04542 Sigma-70 region 2 Y880_RS14485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y880_RS14485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y880_RS14490 PF12796 Ankyrin repeats (3 copies) Y880_RS14490 PF00023 Ankyrin repeat Y880_RS14525 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS14530 PF01230 HIT domain Y880_RS14535 PF00245 Alkaline phosphatase Y880_RS14540 PF00271 Helicase conserved C-terminal domain Y880_RS14540 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Y880_RS14540 PF04408 Helicase associated domain (HA2) Y880_RS14540 PF11898 Domain of unknown function (DUF3418) Y880_RS14540 PF00270 DEAD/DEAH box helicase Y880_RS14555 PF00501 AMP-binding enzyme Y880_RS14555 PF13193 AMP-binding enzyme C-terminal domain Y880_RS14560 PF00501 AMP-binding enzyme Y880_RS14560 PF13193 AMP-binding enzyme C-terminal domain Y880_RS14565 PF12146 Serine aminopeptidase, S33 Y880_RS14570 PF01575 MaoC like domain Y880_RS14575 PF07690 Major Facilitator Superfamily Y880_RS14580 PF13533 Biotin-lipoyl like Y880_RS14610 PF18339 RapA N-terminal Tudor like domain 1 Y880_RS14610 PF12137 RNA polymerase recycling family C-terminal Y880_RS14610 PF00271 Helicase conserved C-terminal domain Y880_RS14610 PF00176 SNF2 family N-terminal domain Y880_RS14610 PF18337 RapA N-terminal Tudor like domain Y880_RS14620 PF00582 Universal stress protein family Y880_RS14625 PF00884 Sulfatase Y880_RS14625 PF08019 Phosphoethanolamine transferase EptA/EptB Y880_RS14630 PF00563 EAL domain Y880_RS14630 PF03707 Bacterial signalling protein N terminal repeat Y880_RS14630 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS14635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y880_RS14635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y880_RS14650 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS14670 PF05506 Domain of unknown function (DUF756) Y880_RS14670 PF04185 Phosphoesterase family Y880_RS14680 PF03466 LysR substrate binding domain Y880_RS14680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS14695 PF00561 alpha/beta hydrolase fold Y880_RS14695 PF00106 short chain dehydrogenase Y880_RS14705 PF00574 Clp protease Y880_RS14710 PF00501 AMP-binding enzyme Y880_RS14710 PF00550 Phosphopantetheine attachment site Y880_RS14710 PF00668 Condensation domain Y880_RS14710 PF13193 AMP-binding enzyme C-terminal domain Y880_RS14710 PF00975 Thioesterase domain Y880_RS14715 PF01494 FAD binding domain Y880_RS14725 PF00106 short chain dehydrogenase Y880_RS14730 PF00067 Cytochrome P450 Y880_RS14735 PF12680 SnoaL-like domain Y880_RS14755 PF07690 Major Facilitator Superfamily Y880_RS14760 PF01370 NAD dependent epimerase/dehydratase family Y880_RS14800 PF00563 EAL domain Y880_RS14800 PF00360 Phytochrome region Y880_RS14800 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS14800 PF01590 GAF domain Y880_RS14805 PF00570 HRDC domain Y880_RS14805 PF16124 RecQ zinc-binding Y880_RS14805 PF00271 Helicase conserved C-terminal domain Y880_RS14805 PF00270 DEAD/DEAH box helicase Y880_RS14805 PF09382 RQC domain Y880_RS14815 PF00486 Transcriptional regulatory protein, C terminal Y880_RS14815 PF00072 Response regulator receiver domain Y880_RS14820 PF13466 STAS domain Y880_RS14825 PF01739 CheR methyltransferase, SAM binding domain Y880_RS14825 PF03705 CheR methyltransferase, all-alpha domain Y880_RS14830 PF00072 Response regulator receiver domain Y880_RS14830 PF01584 CheW-like domain Y880_RS14850 PF07317 Flagellar regulator YcgR Y880_RS14850 PF07238 PilZ domain Y880_RS14865 PF00120 Glutamine synthetase, catalytic domain Y880_RS14870 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS14875 PF00892 EamA-like transporter family Y880_RS14895 PF02293 AmiS/UreI family transporter Y880_RS14900 PF03861 ANTAR domain Y880_RS14910 PF07724 AAA domain (Cdc48 subfamily) Y880_RS14910 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS14915 PF00795 Carbon-nitrogen hydrolase Y880_RS14965 PF12706 Beta-lactamase superfamily domain Y880_RS14975 PF07969 Amidohydrolase family Y880_RS14980 PF00005 ABC transporter Y880_RS14985 PF00005 ABC transporter Y880_RS14990 PF06007 Phosphonate metabolism protein PhnJ Y880_RS14995 PF05861 Bacterial phosphonate metabolism protein (PhnI) Y880_RS15010 PF07702 UTRA domain Y880_RS15010 PF00392 Bacterial regulatory proteins, gntR family Y880_RS15015 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS15025 PF00005 ABC transporter Y880_RS15030 PF03869 Arc-like DNA binding domain Y880_RS15045 PF01980 tRNA-methyltransferase O Y880_RS15045 PF18389 TrmO C-terminal domain Y880_RS15060 PF12801 4Fe-4S binding domain Y880_RS15060 PF04205 FMN-binding domain Y880_RS15075 PF00005 ABC transporter Y880_RS15080 PF12679 ABC-2 family transporter protein Y880_RS15085 PF05573 NosL Y880_RS15090 PF00175 Oxidoreductase NAD-binding domain Y880_RS15090 PF00970 Oxidoreductase FAD-binding domain Y880_RS15095 PF03466 LysR substrate binding domain Y880_RS15095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS15120 PF06146 Phosphate-starvation-inducible E Y880_RS15130 PF02321 Outer membrane efflux protein Y880_RS15135 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS15145 PF06438 Heme-binding protein A (HasA) Y880_RS15150 PF07715 TonB-dependent Receptor Plug Domain Y880_RS15150 PF00593 TonB dependent receptor Y880_RS15190 PF02817 e3 binding domain Y880_RS15190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y880_RS15190 PF00364 Biotin-requiring enzyme Y880_RS15195 PF02780 Transketolase, C-terminal domain Y880_RS15195 PF02779 Transketolase, pyrimidine binding domain Y880_RS15200 PF00676 Dehydrogenase E1 component Y880_RS15205 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y880_RS15205 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y880_RS15210 PF13369 Transglutaminase-like superfamily Y880_RS15220 PF07044 Protein of unknown function (DUF1329) Y880_RS15235 PF01593 Flavin containing amine oxidoreductase Y880_RS15245 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS15250 PF00106 short chain dehydrogenase Y880_RS15260 PF12697 Alpha/beta hydrolase family Y880_RS15265 PF00596 Class II Aldolase and Adducin N-terminal domain Y880_RS15270 PF04172 LrgB-like family Y880_RS15275 PF03788 LrgA family Y880_RS15280 PF03466 LysR substrate binding domain Y880_RS15280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS15285 PF00258 Flavodoxin Y880_RS15300 PF01227 GTP cyclohydrolase I Y880_RS15305 PF02152 Dihydroneopterin aldolase Y880_RS15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS15320 PF03459 TOBE domain Y880_RS15325 PF00005 ABC transporter Y880_RS15330 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS15335 PF00296 Luciferase-like monooxygenase Y880_RS15340 PF09084 NMT1/THI5 like Y880_RS15345 PF03358 NADPH-dependent FMN reductase Y880_RS15350 PF00005 ABC transporter Y880_RS15355 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS15360 PF09084 NMT1/THI5 like Y880_RS15365 PF00578 AhpC/TSA family Y880_RS15365 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y880_RS15375 PF06039 Malate:quinone oxidoreductase (Mqo) Y880_RS15380 PF04337 Protein of unknown function, DUF480 Y880_RS15385 PF00108 Thiolase, N-terminal domain Y880_RS15385 PF02803 Thiolase, C-terminal domain Y880_RS15390 PF03976 Polyphosphate kinase 2 (PPK2) Y880_RS15415 PF13537 Glutamine amidotransferase domain Y880_RS15415 PF00733 Asparagine synthase Y880_RS15420 PF02875 Mur ligase family, glutamate ligase domain Y880_RS15420 PF08245 Mur ligase middle domain Y880_RS15420 PF08443 RimK-like ATP-grasp domain Y880_RS15425 PF05343 M42 glutamyl aminopeptidase Y880_RS15430 PF01627 Hpt domain Y880_RS15430 PF00072 Response regulator receiver domain Y880_RS15430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS15430 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS15430 PF00672 HAMP domain Y880_RS15430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y880_RS15435 PF06794 Uncharacterised protein family (UPF0270) Y880_RS15450 PF00271 Helicase conserved C-terminal domain Y880_RS15450 PF00270 DEAD/DEAH box helicase Y880_RS15455 PF07690 Major Facilitator Superfamily Y880_RS15460 PF00924 Mechanosensitive ion channel Y880_RS15465 PF01872 RibD C-terminal domain Y880_RS15475 PF00390 Malic enzyme, N-terminal domain Y880_RS15475 PF03949 Malic enzyme, NAD binding domain Y880_RS15485 PF00877 NlpC/P60 family Y880_RS15495 PF00892 EamA-like transporter family Y880_RS15500 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS15505 PF00765 Autoinducer synthase Y880_RS15510 PF03472 Autoinducer binding domain Y880_RS15510 PF00196 Bacterial regulatory proteins, luxR family Y880_RS15520 PF00561 alpha/beta hydrolase fold Y880_RS15530 PF00692 dUTPase Y880_RS15535 PF10609 NUBPL iron-transfer P-loop NTPase Y880_RS15540 PF09334 tRNA synthetases class I (M) Y880_RS15540 PF01588 Putative tRNA binding domain Y880_RS15560 PF02508 Rnf-Nqr subunit, membrane protein Y880_RS15565 PF04060 Putative Fe-S cluster Y880_RS15570 PF12838 4Fe-4S dicluster domain Y880_RS15570 PF13375 RnfC Barrel sandwich hybrid domain Y880_RS15570 PF10531 SLBB domain Y880_RS15570 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y880_RS15575 PF03116 NQR2, RnfD, RnfE family Y880_RS15580 PF04205 FMN-binding domain Y880_RS15585 PF02508 Rnf-Nqr subunit, membrane protein Y880_RS15590 PF00633 Helix-hairpin-helix motif Y880_RS15590 PF10576 Iron-sulfur binding domain of endonuclease III Y880_RS15590 PF00730 HhH-GPD superfamily base excision DNA repair protein Y880_RS15605 PF00970 Oxidoreductase FAD-binding domain Y880_RS15605 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS15615 PF00355 Rieske [2Fe-2S] domain Y880_RS15635 PF00171 Aldehyde dehydrogenase family Y880_RS15640 PF03447 Homoserine dehydrogenase, NAD binding domain Y880_RS15640 PF01958 Domain of unknown function DUF108 Y880_RS15645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y880_RS15645 PF00205 Thiamine pyrophosphate enzyme, central domain Y880_RS15645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y880_RS15655 PF09339 IclR helix-turn-helix domain Y880_RS15655 PF01614 Bacterial transcriptional regulator Y880_RS15675 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS15685 PF00005 ABC transporter Y880_RS15695 PF10397 Adenylosuccinate lyase C-terminus Y880_RS15695 PF00206 Lyase Y880_RS15700 PF00206 Lyase Y880_RS15700 PF10397 Adenylosuccinate lyase C-terminus Y880_RS15720 PF02321 Outer membrane efflux protein Y880_RS15725 PF00873 AcrB/AcrD/AcrF family Y880_RS15730 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS15730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS15735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS15740 PF00764 Arginosuccinate synthase Y880_RS15750 PF01979 Amidohydrolase family Y880_RS15755 PF00929 Exonuclease Y880_RS15760 PF00578 AhpC/TSA family Y880_RS15760 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y880_RS15765 PF04324 BFD-like [2Fe-2S] binding domain Y880_RS15770 PF00210 Ferritin-like domain Y880_RS15775 PF07690 Major Facilitator Superfamily Y880_RS15780 PF00462 Glutaredoxin Y880_RS15785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS15785 PF00384 Molybdopterin oxidoreductase Y880_RS15785 PF01568 Molydopterin dinucleotide binding domain Y880_RS15790 PF03797 Autotransporter beta-domain Y880_RS15790 PF00082 Subtilase family Y880_RS15790 PF12951 Passenger-associated-transport-repeat Y880_RS15800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y880_RS15800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y880_RS15805 PF00005 ABC transporter Y880_RS15805 PF08402 TOBE domain Y880_RS15810 PF03883 Peroxide stress protein YaaA Y880_RS15815 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y880_RS15815 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y880_RS15815 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y880_RS15825 PF07238 PilZ domain Y880_RS15835 PF13372 Alginate export Y880_RS15845 PF16824 C-terminal carbohydrate-binding module Y880_RS15845 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX Y880_RS15850 PF05426 Alginate lyase Y880_RS15865 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX Y880_RS15875 PF00483 Nucleotidyl transferase Y880_RS15875 PF01050 Mannose-6-phosphate isomerase Y880_RS15885 PF00535 Glycosyl transferase family 2 Y880_RS15890 PF01370 NAD dependent epimerase/dehydratase family Y880_RS15890 PF02911 Formyl transferase, C-terminal domain Y880_RS15890 PF00551 Formyl transferase Y880_RS15895 PF01522 Polysaccharide deacetylase Y880_RS15900 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Y880_RS15905 PF00892 EamA-like transporter family Y880_RS15910 PF00893 Small Multidrug Resistance protein Y880_RS15915 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y880_RS15915 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y880_RS15915 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y880_RS15925 PF00294 pfkB family carbohydrate kinase Y880_RS15935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y880_RS15935 PF00356 Bacterial regulatory proteins, lacI family Y880_RS15940 PF01026 TatD related DNase Y880_RS15950 PF03466 LysR substrate binding domain Y880_RS15950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS15960 PF00107 Zinc-binding dehydrogenase Y880_RS15960 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS15965 PF00501 AMP-binding enzyme Y880_RS15965 PF16177 Acetyl-coenzyme A synthetase N-terminus Y880_RS15965 PF13193 AMP-binding enzyme C-terminal domain Y880_RS15975 PF00171 Aldehyde dehydrogenase family Y880_RS15980 PF02311 AraC-like ligand binding domain Y880_RS15980 PF12833 Helix-turn-helix domain Y880_RS15990 PF07690 Major Facilitator Superfamily Y880_RS15995 PF00440 Bacterial regulatory proteins, tetR family Y880_RS15995 PF08361 MAATS-type transcriptional repressor, C-terminal region Y880_RS16030 PF02567 Phenazine biosynthesis-like protein Y880_RS16035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y880_RS16035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y880_RS16040 PF04073 Aminoacyl-tRNA editing domain Y880_RS16045 PF00230 Major intrinsic protein Y880_RS16050 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y880_RS16050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y880_RS16060 PF08220 DeoR-like helix-turn-helix domain Y880_RS16060 PF00455 DeoR C terminal sensor domain Y880_RS16065 PF01266 FAD dependent oxidoreductase Y880_RS16065 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Y880_RS16070 PF06942 GlpM protein Y880_RS16075 PF00561 alpha/beta hydrolase fold Y880_RS16080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS16080 PF03466 LysR substrate binding domain Y880_RS16085 PF03573 outer membrane porin, OprD family Y880_RS16090 PF02803 Thiolase, C-terminal domain Y880_RS16090 PF00108 Thiolase, N-terminal domain Y880_RS16095 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Y880_RS16095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y880_RS16095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y880_RS16100 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS16105 PF02515 CoA-transferase family III Y880_RS16110 PF18158 Adaptive response protein AidB N-terminal domain Y880_RS16110 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS16110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS16115 PF03466 LysR substrate binding domain Y880_RS16115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS16125 PF00083 Sugar (and other) transporter Y880_RS16125 PF07690 Major Facilitator Superfamily Y880_RS16130 PF02805 Metal binding domain of Ada Y880_RS16130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y880_RS16130 PF12833 Helix-turn-helix domain Y880_RS16130 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y880_RS16135 PF00324 Amino acid permease Y880_RS16140 PF00795 Carbon-nitrogen hydrolase Y880_RS16150 PF00444 Ribosomal protein L36 Y880_RS16155 PF01197 Ribosomal protein L31 Y880_RS16160 PF01645 Conserved region in glutamate synthase Y880_RS16165 PF01219 Prokaryotic diacylglycerol kinase Y880_RS16170 PF00072 Response regulator receiver domain Y880_RS16170 PF00196 Bacterial regulatory proteins, luxR family Y880_RS16180 PF03942 DTW domain Y880_RS16185 PF08402 TOBE domain Y880_RS16185 PF00005 ABC transporter Y880_RS16190 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS16195 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS16200 PF13416 Bacterial extracellular solute-binding protein Y880_RS16210 PF12843 Putative quorum-sensing-regulated virulence factor Y880_RS16215 PF09364 XFP N-terminal domain Y880_RS16215 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Y880_RS16215 PF09363 XFP C-terminal domain Y880_RS16220 PF00753 Metallo-beta-lactamase superfamily Y880_RS16220 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Y880_RS16220 PF10996 Beta-Casp domain Y880_RS16230 PF02631 RecX family Y880_RS16235 PF00154 recA bacterial DNA recombination protein Y880_RS16240 PF02464 Competence-damaged protein Y880_RS16255 PF05192 MutS domain III Y880_RS16255 PF00488 MutS domain V Y880_RS16255 PF05188 MutS domain II Y880_RS16255 PF05190 MutS family domain IV Y880_RS16255 PF01624 MutS domain I Y880_RS16260 PF11953 Domain of unknown function (DUF3470) Y880_RS16260 PF00037 4Fe-4S binding domain Y880_RS16265 PF04542 Sigma-70 region 2 Y880_RS16265 PF00140 Sigma-70 factor, region 1.2 Y880_RS16265 PF04539 Sigma-70 region 3 Y880_RS16265 PF04545 Sigma-70, region 4 Y880_RS16270 PF01476 LysM domain Y880_RS16270 PF01551 Peptidase family M23 Y880_RS16280 PF01975 Survival protein SurE Y880_RS16285 PF01142 tRNA pseudouridine synthase D (TruD) Y880_RS16290 PF02542 YgbB family Y880_RS16295 PF00756 Putative esterase Y880_RS16300 PF00107 Zinc-binding dehydrogenase Y880_RS16300 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS16305 PF03466 LysR substrate binding domain Y880_RS16310 PF04143 Sulphur transport Y880_RS16320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Y880_RS16325 PF04977 Septum formation initiator Y880_RS16330 PF03952 Enolase, N-terminal domain Y880_RS16330 PF00113 Enolase, C-terminal TIM barrel domain Y880_RS16335 PF00793 DAHP synthetase I family Y880_RS16340 PF06418 CTP synthase N-terminus Y880_RS16340 PF00117 Glutamine amidotransferase class-I Y880_RS16345 PF01171 PP-loop family Y880_RS16345 PF09179 TilS substrate binding domain Y880_RS16345 PF11734 TilS substrate C-terminal domain Y880_RS16350 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Y880_RS16355 PF07733 Bacterial DNA polymerase III alpha NTPase domain Y880_RS16355 PF01336 OB-fold nucleic acid binding domain Y880_RS16355 PF02811 PHP domain Y880_RS16355 PF14579 Helix-hairpin-helix motif Y880_RS16355 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Y880_RS16360 PF01235 Sodium:alanine symporter family Y880_RS16365 PF01351 Ribonuclease HII Y880_RS16370 PF02684 Lipid-A-disaccharide synthetase Y880_RS16375 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Y880_RS16375 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS16380 PF07977 FabA-like domain Y880_RS16385 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Y880_RS16385 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS16390 PF03938 Outer membrane protein (OmpH-like) Y880_RS16395 PF01103 Surface antigen Y880_RS16395 PF07244 Surface antigen variable number repeat Y880_RS16400 PF02163 Peptidase family M50 Y880_RS16400 PF17820 PDZ domain Y880_RS16400 PF13180 PDZ domain Y880_RS16405 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Y880_RS16405 PF13288 DXP reductoisomerase C-terminal domain Y880_RS16405 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Y880_RS16415 PF01255 Putative undecaprenyl diphosphate synthase Y880_RS16420 PF01765 Ribosome recycling factor Y880_RS16425 PF00696 Amino acid kinase family Y880_RS16430 PF00889 Elongation factor TS Y880_RS16435 PF00318 Ribosomal protein S2 Y880_RS16440 PF00557 Metallopeptidase family M24 Y880_RS16445 PF08335 GlnD PII-uridylyltransferase Y880_RS16445 PF01966 HD domain Y880_RS16445 PF01909 Nucleotidyltransferase domain Y880_RS16445 PF01842 ACT domain Y880_RS16450 PF00155 Aminotransferase class I and II Y880_RS16455 PF00999 Sodium/hydrogen exchanger family Y880_RS16475 PF03960 ArsC family Y880_RS16480 PF01810 LysE type translocator Y880_RS16485 PF14602 Hexapeptide repeat of succinyl-transferase Y880_RS16485 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Y880_RS16490 PF00266 Aminotransferase class-V Y880_RS16495 PF02657 Fe-S metabolism associated domain Y880_RS16515 PF00005 ABC transporter Y880_RS16520 PF01553 Acyltransferase Y880_RS16535 PF00873 AcrB/AcrD/AcrF family Y880_RS16540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS16555 PF04445 Putative SAM-dependent methyltransferase Y880_RS16570 PF01904 Protein of unknown function DUF72 Y880_RS16580 PF00814 Glycoprotease family Y880_RS16585 PF05191 Adenylate kinase, active site lid Y880_RS16590 PF00311 Phosphoenolpyruvate carboxylase Y880_RS16600 PF13411 MerR HTH family regulatory protein Y880_RS16605 PF00403 Heavy-metal-associated domain Y880_RS16615 PF00691 OmpA family Y880_RS16620 PF01661 Macro domain Y880_RS16630 PF11713 Peptidase C80 family Y880_RS16630 PF07634 RtxA repeat Y880_RS16630 PF12146 Serine aminopeptidase, S33 Y880_RS16630 PF16671 Actin cross-linking domain Y880_RS16630 PF11647 Membrane Localization Domain Y880_RS16655 PF00152 tRNA synthetases class II (D, K and N) Y880_RS16655 PF01336 OB-fold nucleic acid binding domain Y880_RS16665 PF00360 Phytochrome region Y880_RS16665 PF00563 EAL domain Y880_RS16665 PF01590 GAF domain Y880_RS16665 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS16670 PF00072 Response regulator receiver domain Y880_RS16670 PF01339 CheB methylesterase Y880_RS16675 PF01584 CheW-like domain Y880_RS16675 PF00072 Response regulator receiver domain Y880_RS16675 PF01627 Hpt domain Y880_RS16675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS16685 PF01739 CheR methyltransferase, SAM binding domain Y880_RS16695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS16695 PF00672 HAMP domain Y880_RS16695 PF12729 Four helix bundle sensory module for signal transduction Y880_RS16700 PF07690 Major Facilitator Superfamily Y880_RS16700 PF00083 Sugar (and other) transporter Y880_RS16705 PF00732 GMC oxidoreductase Y880_RS16705 PF05199 GMC oxidoreductase Y880_RS16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS16710 PF03466 LysR substrate binding domain Y880_RS16725 PF00196 Bacterial regulatory proteins, luxR family Y880_RS16725 PF00072 Response regulator receiver domain Y880_RS16740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y880_RS16770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS16775 PF02868 Thermolysin metallopeptidase, alpha-helical domain Y880_RS16775 PF03413 Peptidase propeptide and YPEB domain Y880_RS16775 PF07504 Fungalysin/Thermolysin Propeptide Motif Y880_RS16775 PF01447 Thermolysin metallopeptidase, catalytic domain Y880_RS16780 PF02272 DHHA1 domain Y880_RS16780 PF17768 RecJ OB domain Y880_RS16780 PF01368 DHH family Y880_RS16785 PF07152 YaeQ protein Y880_RS16795 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y880_RS16795 PF17864 RuvB AAA lid domain Y880_RS16795 PF05491 RuvB C-terminal winged helix domain Y880_RS16820 PF02515 CoA-transferase family III Y880_RS16835 PF14821 Threonine synthase N terminus Y880_RS16835 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS16840 PF03447 Homoserine dehydrogenase, NAD binding domain Y880_RS16840 PF01842 ACT domain Y880_RS16840 PF00742 Homoserine dehydrogenase Y880_RS16845 PF10411 Disulfide bond isomerase protein N-terminus Y880_RS16845 PF13098 Thioredoxin-like domain Y880_RS16850 PF00589 Phage integrase family Y880_RS16850 PF02899 Phage integrase, N-terminal SAM-like domain Y880_RS16865 PF03061 Thioesterase superfamily Y880_RS16870 PF01245 Ribosomal protein L19 Y880_RS16875 PF01746 tRNA (Guanine-1)-methyltransferase Y880_RS16880 PF01782 RimM N-terminal domain Y880_RS16880 PF05239 PRC-barrel domain Y880_RS16885 PF00886 Ribosomal protein S16 Y880_RS16890 PF02978 Signal peptide binding domain Y880_RS16890 PF02881 SRP54-type protein, helical bundle domain Y880_RS16890 PF00448 SRP54-type protein, GTPase domain Y880_RS16900 PF00571 CBS domain Y880_RS16900 PF03471 Transporter associated domain Y880_RS16900 PF01595 Cyclin M transmembrane N-terminal domain Y880_RS16910 PF00083 Sugar (and other) transporter Y880_RS16910 PF07690 Major Facilitator Superfamily Y880_RS16920 PF02222 ATP-grasp domain Y880_RS16920 PF01370 NAD dependent epimerase/dehydratase family Y880_RS16930 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS16935 PF00293 NUDIX domain Y880_RS16940 PF09297 NADH pyrophosphatase zinc ribbon domain Y880_RS16940 PF00293 NUDIX domain Y880_RS16950 PF07702 UTRA domain Y880_RS16950 PF00392 Bacterial regulatory proteins, gntR family Y880_RS16955 PF01979 Amidohydrolase family Y880_RS16960 PF01380 SIS domain Y880_RS16970 PF02378 Phosphotransferase system, EIIC Y880_RS16970 PF00367 phosphotransferase system, EIIB Y880_RS16970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y880_RS16975 PF01784 NIF3 (NGG1p interacting factor 3) Y880_RS16985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Y880_RS16985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Y880_RS16985 PF02769 AIR synthase related protein, C-terminal domain Y880_RS16990 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS16990 PF01464 Transglycosylase SLT domain Y880_RS17010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y880_RS17015 PF07732 Multicopper oxidase Y880_RS17015 PF00394 Multicopper oxidase Y880_RS17015 PF07731 Multicopper oxidase Y880_RS17020 PF16884 N-terminal domain of oxidoreductase Y880_RS17020 PF00107 Zinc-binding dehydrogenase Y880_RS17025 PF12852 Cupin Y880_RS17025 PF12833 Helix-turn-helix domain Y880_RS17030 PF07690 Major Facilitator Superfamily Y880_RS17035 PF00106 short chain dehydrogenase Y880_RS17045 PF00958 GMP synthase C terminal domain Y880_RS17045 PF02540 NAD synthase Y880_RS17045 PF00117 Glutamine amidotransferase class-I Y880_RS17050 PF00571 CBS domain Y880_RS17050 PF00478 IMP dehydrogenase / GMP reductase domain Y880_RS17055 PF00196 Bacterial regulatory proteins, luxR family Y880_RS17055 PF00072 Response regulator receiver domain Y880_RS17070 PF00850 Histone deacetylase domain Y880_RS17085 PF13742 OB-fold nucleic acid binding domain Y880_RS17085 PF02601 Exonuclease VII, large subunit Y880_RS17090 PF03466 LysR substrate binding domain Y880_RS17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS17095 PF03480 Bacterial extracellular solute-binding protein, family 7 Y880_RS17105 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y880_RS17115 PF01965 DJ-1/PfpI family Y880_RS17115 PF12833 Helix-turn-helix domain Y880_RS17120 PF00857 Isochorismatase family Y880_RS17130 PF04314 Copper chaperone PCu(A)C Y880_RS17140 PF01551 Peptidase family M23 Y880_RS17140 PF08525 Opacity-associated protein A N-terminal motif Y880_RS17140 PF01476 LysM domain Y880_RS17155 PF00593 TonB dependent receptor Y880_RS17155 PF07715 TonB-dependent Receptor Plug Domain Y880_RS17165 PF08502 LeuA allosteric (dimerisation) domain Y880_RS17165 PF00682 HMGL-like Y880_RS17180 PF00248 Aldo/keto reductase family Y880_RS17190 PF00795 Carbon-nitrogen hydrolase Y880_RS17195 PF00155 Aminotransferase class I and II Y880_RS17200 PF01926 50S ribosome-binding GTPase Y880_RS17200 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Y880_RS17205 PF13360 PQQ-like domain Y880_RS17215 PF03129 Anticodon binding domain Y880_RS17215 PF13393 Histidyl-tRNA synthetase Y880_RS17220 PF04551 GcpE protein Y880_RS17235 PF04055 Radical SAM superfamily Y880_RS17240 PF00334 Nucleoside diphosphate kinase Y880_RS17245 PF04384 Iron-sulphur cluster assembly Y880_RS17250 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS17255 PF00012 Hsp70 protein Y880_RS17260 PF07743 HSCB C-terminal oligomerisation domain Y880_RS17260 PF00226 DnaJ domain Y880_RS17265 PF01521 Iron-sulphur cluster biosynthesis Y880_RS17270 PF01592 NifU-like N terminal domain Y880_RS17275 PF00266 Aminotransferase class-V Y880_RS17280 PF02082 Transcriptional regulator Y880_RS17285 PF06426 Serine acetyltransferase, N-terminal Y880_RS17285 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS17290 PF00588 SpoU rRNA Methylase family Y880_RS17295 PF00459 Inositol monophosphatase family Y880_RS17300 PF05433 Glycine zipper 2TM domain Y880_RS17305 PF02355 Protein export membrane protein Y880_RS17305 PF07549 SecD/SecF GG Motif Y880_RS17310 PF13721 SecD export protein N-terminal TM region Y880_RS17310 PF07549 SecD/SecF GG Motif Y880_RS17310 PF02355 Protein export membrane protein Y880_RS17315 PF02699 Preprotein translocase subunit Y880_RS17320 PF01702 Queuine tRNA-ribosyltransferase Y880_RS17325 PF02547 Queuosine biosynthesis protein Y880_RS17335 PF00563 EAL domain Y880_RS17335 PF12792 CSS motif domain associated with EAL Y880_RS17345 PF03739 Lipopolysaccharide export system permease LptF/LptG Y880_RS17350 PF03739 Lipopolysaccharide export system permease LptF/LptG Y880_RS17360 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS17360 PF12833 Helix-turn-helix domain Y880_RS17365 PF02789 Cytosol aminopeptidase family, N-terminal domain Y880_RS17365 PF00883 Cytosol aminopeptidase family, catalytic domain Y880_RS17370 PF04364 DNA polymerase III chi subunit, HolC Y880_RS17380 PF00133 tRNA synthetases class I (I, L, M and V) Y880_RS17380 PF10458 Valyl tRNA synthetase tRNA binding arm Y880_RS17380 PF08264 Anticodon-binding domain of tRNA Y880_RS17395 PF02653 Branched-chain amino acid transport system / permease component Y880_RS17400 PF00005 ABC transporter Y880_RS17405 PF03600 Citrate transporter Y880_RS17405 PF02080 TrkA-C domain Y880_RS17410 PF05971 RNA methyltransferase Y880_RS17415 PF03496 ADP-ribosyltransferase exoenzyme Y880_RS17415 PF03545 Yersinia virulence determinant (YopE) Y880_RS17440 PF03466 LysR substrate binding domain Y880_RS17440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS17460 PF04245 37-kD nucleoid-associated bacterial protein Y880_RS17480 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS17485 PF01541 GIY-YIG catalytic domain Y880_RS17500 PF01066 CDP-alcohol phosphatidyltransferase Y880_RS17505 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS17510 PF02230 Phospholipase/Carboxylesterase Y880_RS17515 PF00501 AMP-binding enzyme Y880_RS17515 PF13193 AMP-binding enzyme C-terminal domain Y880_RS17525 PF00270 DEAD/DEAH box helicase Y880_RS17525 PF00271 Helicase conserved C-terminal domain Y880_RS17530 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y880_RS17540 PF13309 HTH domain Y880_RS17540 PF08348 YheO-like PAS domain Y880_RS17545 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS17560 PF04055 Radical SAM superfamily Y880_RS17560 PF06463 Molybdenum Cofactor Synthesis C Y880_RS17565 PF00639 PPIC-type PPIASE domain Y880_RS17565 PF09312 SurA N-terminal domain Y880_RS17570 PF02665 Nitrate reductase gamma subunit Y880_RS17575 PF02613 Nitrate reductase delta subunit Y880_RS17580 PF14711 Respiratory nitrate reductase beta C-terminal Y880_RS17580 PF13247 4Fe-4S dicluster domain Y880_RS17585 PF00384 Molybdopterin oxidoreductase Y880_RS17585 PF01568 Molydopterin dinucleotide binding domain Y880_RS17585 PF14710 Respiratory nitrate reductase alpha N-terminal Y880_RS17590 PF07690 Major Facilitator Superfamily Y880_RS17595 PF07690 Major Facilitator Superfamily Y880_RS17600 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y880_RS17600 PF07730 Histidine kinase Y880_RS17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS17600 PF00672 HAMP domain Y880_RS17605 PF00196 Bacterial regulatory proteins, luxR family Y880_RS17605 PF00072 Response regulator receiver domain Y880_RS17610 PF08859 DGC domain Y880_RS17620 PF08241 Methyltransferase domain Y880_RS17625 PF00106 short chain dehydrogenase Y880_RS17650 PF00999 Sodium/hydrogen exchanger family Y880_RS17660 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS17665 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y880_RS17670 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS17675 PF00571 CBS domain Y880_RS17675 PF00005 ABC transporter Y880_RS17680 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS17680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS17690 PF04632 Fusaric acid resistance protein family Y880_RS17700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS17700 PF03466 LysR substrate binding domain Y880_RS17705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y880_RS17705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y880_RS17710 PF00892 EamA-like transporter family Y880_RS17715 PF12833 Helix-turn-helix domain Y880_RS17715 PF01965 DJ-1/PfpI family Y880_RS17720 PF04542 Sigma-70 region 2 Y880_RS17720 PF08281 Sigma-70, region 4 Y880_RS17725 PF16220 Domain of unknown function (DUF4880) Y880_RS17725 PF04773 FecR protein Y880_RS17730 PF00593 TonB dependent receptor Y880_RS17730 PF07660 Secretin and TonB N terminus short domain Y880_RS17730 PF07715 TonB-dependent Receptor Plug Domain Y880_RS17740 PF00009 Elongation factor Tu GTP binding domain Y880_RS17740 PF03144 Elongation factor Tu domain 2 Y880_RS17740 PF16658 Class II release factor RF3, C-terminal domain Y880_RS17775 PF16655 PhoD-like phosphatase, N-terminal domain Y880_RS17775 PF09423 PhoD-like phosphatase Y880_RS17780 PF02036 SCP-2 sterol transfer family Y880_RS17785 PF01136 Peptidase family U32 Y880_RS17790 PF01136 Peptidase family U32 Y880_RS17795 PF03453 MoeA N-terminal region (domain I and II) Y880_RS17795 PF03454 MoeA C-terminal region (domain IV) Y880_RS17795 PF00994 Probable molybdopterin binding domain Y880_RS17800 PF00994 Probable molybdopterin binding domain Y880_RS17805 PF02391 MoaE protein Y880_RS17810 PF02597 ThiS family Y880_RS17815 PF01967 MoaC family Y880_RS17820 PF02562 PhoH-like protein Y880_RS17820 PF13638 PIN domain Y880_RS17830 PF00403 Heavy-metal-associated domain Y880_RS17840 PF07044 Protein of unknown function (DUF1329) Y880_RS17855 PF00501 AMP-binding enzyme Y880_RS17855 PF13193 AMP-binding enzyme C-terminal domain Y880_RS17860 PF00108 Thiolase, N-terminal domain Y880_RS17860 PF02803 Thiolase, C-terminal domain Y880_RS17870 PF02311 AraC-like ligand binding domain Y880_RS17870 PF12833 Helix-turn-helix domain Y880_RS17880 PF02322 Cytochrome bd terminal oxidase subunit II Y880_RS17885 PF01654 Cytochrome bd terminal oxidase subunit I Y880_RS17890 PF03180 NLPA lipoprotein Y880_RS17895 PF00158 Sigma-54 interaction domain Y880_RS17900 PF02028 BCCT, betaine/carnitine/choline family transporter Y880_RS17905 PF03169 OPT oligopeptide transporter protein Y880_RS17910 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y880_RS17915 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS17920 PF00005 ABC transporter Y880_RS17925 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y880_RS17935 PF00216 Bacterial DNA-binding protein Y880_RS17960 PF13302 Acetyltransferase (GNAT) domain Y880_RS17965 PF13302 Acetyltransferase (GNAT) domain Y880_RS17970 PF00072 Response regulator receiver domain Y880_RS17970 PF00989 PAS fold Y880_RS17970 PF01627 Hpt domain Y880_RS17970 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS17970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS17970 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS17975 PF13426 PAS domain Y880_RS17975 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS17975 PF00563 EAL domain Y880_RS17980 PF00196 Bacterial regulatory proteins, luxR family Y880_RS17980 PF00072 Response regulator receiver domain Y880_RS17990 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS17990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS17995 PF00271 Helicase conserved C-terminal domain Y880_RS17995 PF00270 DEAD/DEAH box helicase Y880_RS18015 PF00296 Luciferase-like monooxygenase Y880_RS18030 PF00106 short chain dehydrogenase Y880_RS18060 PF16916 Dimerisation domain of Zinc Transporter Y880_RS18060 PF01545 Cation efflux family Y880_RS18070 PF01037 Lrp/AsnC ligand binding domain Y880_RS18085 PF00849 RNA pseudouridylate synthase Y880_RS18090 PF12706 Beta-lactamase superfamily domain Y880_RS18095 PF07516 SecA Wing and Scaffold domain Y880_RS18095 PF01043 SecA preprotein cross-linking domain Y880_RS18095 PF07517 SecA DEAD-like domain Y880_RS18095 PF02810 SEC-C motif Y880_RS18100 PF01048 Phosphorylase superfamily Y880_RS18100 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Y880_RS18110 PF18158 Adaptive response protein AidB N-terminal domain Y880_RS18110 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS18110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS18120 PF00072 Response regulator receiver domain Y880_RS18120 PF01627 Hpt domain Y880_RS18120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS18120 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS18130 PF02581 Thiamine monophosphate synthase Y880_RS18135 PF00202 Aminotransferase class-III Y880_RS18150 PF00919 Uncharacterized protein family UPF0004 Y880_RS18150 PF01938 TRAM domain Y880_RS18150 PF04055 Radical SAM superfamily Y880_RS18155 PF02562 PhoH-like protein Y880_RS18160 PF02130 Uncharacterized protein family UPF0054 Y880_RS18165 PF00571 CBS domain Y880_RS18165 PF03471 Transporter associated domain Y880_RS18170 PF00795 Carbon-nitrogen hydrolase Y880_RS18175 PF02698 DUF218 domain Y880_RS18185 PF08264 Anticodon-binding domain of tRNA Y880_RS18185 PF00133 tRNA synthetases class I (I, L, M and V) Y880_RS18185 PF13603 Leucyl-tRNA synthetase, Domain 2 Y880_RS18185 PF09334 tRNA synthetases class I (M) Y880_RS18210 PF13406 Transglycosylase SLT domain Y880_RS18220 PF03466 LysR substrate binding domain Y880_RS18220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS18225 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Y880_RS18225 PF04055 Radical SAM superfamily Y880_RS18230 PF03099 Biotin/lipoate A/B protein ligase family Y880_RS18235 PF04359 Protein of unknown function (DUF493) Y880_RS18240 PF00768 D-alanyl-D-alanine carboxypeptidase Y880_RS18240 PF07943 Penicillin-binding protein 5, C-terminal domain Y880_RS18250 PF13406 Transglycosylase SLT domain Y880_RS18255 PF01098 Cell cycle protein Y880_RS18260 PF00905 Penicillin binding protein transpeptidase domain Y880_RS18260 PF03717 Penicillin-binding Protein dimerisation domain Y880_RS18265 PF02590 Predicted SPOUT methyltransferase Y880_RS18275 PF01467 Cytidylyltransferase-like Y880_RS18295 PF02245 Methylpurine-DNA glycosylase (MPG) Y880_RS18300 PF09335 SNARE associated Golgi protein Y880_RS18310 PF04172 LrgB-like family Y880_RS18315 PF03788 LrgA family Y880_RS18320 PF01575 MaoC like domain Y880_RS18330 PF13460 NAD(P)H-binding Y880_RS18340 PF02441 Flavoprotein Y880_RS18345 PF02875 Mur ligase family, glutamate ligase domain Y880_RS18345 PF01225 Mur ligase family, catalytic domain Y880_RS18345 PF08245 Mur ligase middle domain Y880_RS18350 PF02954 Bacterial regulatory protein, Fis family Y880_RS18350 PF01590 GAF domain Y880_RS18350 PF00158 Sigma-54 interaction domain Y880_RS18355 PF13520 Amino acid permease Y880_RS18360 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Y880_RS18365 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Y880_RS18370 PF00583 Acetyltransferase (GNAT) family Y880_RS18380 PF00069 Protein kinase domain Y880_RS18385 PF09335 SNARE associated Golgi protein Y880_RS18390 PF06167 Glucose-regulated metallo-peptidase M90 Y880_RS18395 PF00719 Inorganic pyrophosphatase Y880_RS18400 PF00486 Transcriptional regulatory protein, C terminal Y880_RS18400 PF00072 Response regulator receiver domain Y880_RS18410 PF00230 Major intrinsic protein Y880_RS18420 PF00989 PAS fold Y880_RS18420 PF18698 Histidine kinase sensor domain Y880_RS18420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS18420 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS18420 PF00672 HAMP domain Y880_RS18425 PF00005 ABC transporter Y880_RS18445 PF13378 Enolase C-terminal domain-like Y880_RS18450 PF02609 Exonuclease VII small subunit Y880_RS18455 PF00348 Polyprenyl synthetase Y880_RS18460 PF02779 Transketolase, pyrimidine binding domain Y880_RS18460 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Y880_RS18460 PF02780 Transketolase, C-terminal domain Y880_RS18465 PF01497 Periplasmic binding protein Y880_RS18475 PF00925 GTP cyclohydrolase II Y880_RS18490 PF04608 Phosphatidylglycerophosphatase A Y880_RS18500 PF01029 NusB family Y880_RS18505 PF00885 6,7-dimethyl-8-ribityllumazine synthase Y880_RS18510 PF00925 GTP cyclohydrolase II Y880_RS18510 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Y880_RS18515 PF00677 Lumazine binding domain Y880_RS18520 PF01872 RibD C-terminal domain Y880_RS18520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y880_RS18525 PF03477 ATP cone domain Y880_RS18545 PF00085 Thioredoxin Y880_RS18560 PF00005 ABC transporter Y880_RS18560 PF02687 FtsX-like permease family Y880_RS18560 PF12704 MacB-like periplasmic core domain Y880_RS18575 PF03922 OmpW family Y880_RS18580 PF04247 Invasion gene expression up-regulator, SirB Y880_RS18585 PF16363 GDP-mannose 4,6 dehydratase Y880_RS18595 PF12852 Cupin Y880_RS18595 PF12833 Helix-turn-helix domain Y880_RS18605 PF13520 Amino acid permease Y880_RS18630 PF09856 Predicted transcriptional regulator (DUF2083) Y880_RS18630 PF01381 Helix-turn-helix Y880_RS18630 PF06114 IrrE N-terminal-like domain Y880_RS18635 PF00501 AMP-binding enzyme Y880_RS18635 PF13193 AMP-binding enzyme C-terminal domain Y880_RS18635 PF00668 Condensation domain Y880_RS18635 PF00550 Phosphopantetheine attachment site Y880_RS18635 PF07993 Male sterility protein Y880_RS18640 PF00106 short chain dehydrogenase Y880_RS18645 PF00072 Response regulator receiver domain Y880_RS18645 PF00196 Bacterial regulatory proteins, luxR family Y880_RS18655 PF05860 haemagglutination activity domain Y880_RS18660 PF02753 Pili assembly chaperone PapD, C-terminal domain Y880_RS18660 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y880_RS18665 PF00577 Outer membrane usher protein Y880_RS18665 PF13954 PapC N-terminal domain Y880_RS18665 PF13953 PapC C-terminal domain Y880_RS18670 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y880_RS18670 PF02753 Pili assembly chaperone PapD, C-terminal domain Y880_RS18680 PF17409 MoaF C-terminal domain Y880_RS18680 PF10703 MoaF N-terminal domain Y880_RS18685 PF00202 Aminotransferase class-III Y880_RS18700 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Y880_RS18700 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Y880_RS18705 PF01613 Flavin reductase like domain Y880_RS18725 PF07690 Major Facilitator Superfamily Y880_RS18730 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS18730 PF00107 Zinc-binding dehydrogenase Y880_RS18740 PF00732 GMC oxidoreductase Y880_RS18740 PF05199 GMC oxidoreductase Y880_RS18750 PF00486 Transcriptional regulatory protein, C terminal Y880_RS18750 PF00072 Response regulator receiver domain Y880_RS18755 PF00672 HAMP domain Y880_RS18755 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS18755 PF16527 Two-component sensor protein CpxA, periplasmic domain Y880_RS18755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS18765 PF07681 DoxX Y880_RS18775 PF05114 Protein of unknown function (DUF692) Y880_RS18785 PF01966 HD domain Y880_RS18785 PF11871 Domain of unknown function (DUF3391) Y880_RS18795 PF03466 LysR substrate binding domain Y880_RS18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS18810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS18810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y880_RS18810 PF01627 Hpt domain Y880_RS18810 PF00072 Response regulator receiver domain Y880_RS18810 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS18810 PF00672 HAMP domain Y880_RS18815 PF07690 Major Facilitator Superfamily Y880_RS18825 PF11892 Domain of unknown function (DUF3412) Y880_RS18825 PF03641 Possible lysine decarboxylase Y880_RS18825 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Y880_RS18835 PF08446 PAS fold Y880_RS18835 PF00360 Phytochrome region Y880_RS18835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS18835 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS18835 PF01590 GAF domain Y880_RS18845 PF01636 Phosphotransferase enzyme family Y880_RS18855 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y880_RS18860 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y880_RS18865 PF00171 Aldehyde dehydrogenase family Y880_RS18870 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y880_RS18875 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase Y880_RS18880 PF07690 Major Facilitator Superfamily Y880_RS18885 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y880_RS18890 PF03328 HpcH/HpaI aldolase/citrate lyase family Y880_RS18900 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y880_RS18900 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y880_RS18905 PF13746 4Fe-4S dicluster domain Y880_RS18905 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Y880_RS18905 PF12801 4Fe-4S binding domain Y880_RS18910 PF00392 Bacterial regulatory proteins, gntR family Y880_RS18910 PF00155 Aminotransferase class I and II Y880_RS18915 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS18925 PF01047 MarR family Y880_RS18930 PF07690 Major Facilitator Superfamily Y880_RS18935 PF03573 outer membrane porin, OprD family Y880_RS18970 PF00005 ABC transporter Y880_RS18970 PF03412 Peptidase C39 family Y880_RS18970 PF00664 ABC transporter transmembrane region Y880_RS19005 PF00676 Dehydrogenase E1 component Y880_RS19010 PF02779 Transketolase, pyrimidine binding domain Y880_RS19010 PF02780 Transketolase, C-terminal domain Y880_RS19015 PF00364 Biotin-requiring enzyme Y880_RS19015 PF00561 alpha/beta hydrolase fold Y880_RS19020 PF00107 Zinc-binding dehydrogenase Y880_RS19020 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS19025 PF08239 Bacterial SH3 domain Y880_RS19030 PF00296 Luciferase-like monooxygenase Y880_RS19035 PF07715 TonB-dependent Receptor Plug Domain Y880_RS19045 PF00005 ABC transporter Y880_RS19050 PF01497 Periplasmic binding protein Y880_RS19055 PF01032 FecCD transport family Y880_RS19070 PF01425 Amidase Y880_RS19080 PF00392 Bacterial regulatory proteins, gntR family Y880_RS19080 PF00155 Aminotransferase class I and II Y880_RS19095 PF00248 Aldo/keto reductase family Y880_RS19100 PF00593 TonB dependent receptor Y880_RS19100 PF07715 TonB-dependent Receptor Plug Domain Y880_RS19100 PF07660 Secretin and TonB N terminus short domain Y880_RS19105 PF02082 Transcriptional regulator Y880_RS19110 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS19115 PF01965 DJ-1/PfpI family Y880_RS19135 PF01042 Endoribonuclease L-PSP Y880_RS19140 PF03466 LysR substrate binding domain Y880_RS19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS19150 PF05698 Bacterial trigger factor protein (TF) C-terminus Y880_RS19160 PF13649 Methyltransferase domain Y880_RS19165 PF03573 outer membrane porin, OprD family Y880_RS19170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y880_RS19170 PF00205 Thiamine pyrophosphate enzyme, central domain Y880_RS19170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y880_RS19195 PF01965 DJ-1/PfpI family Y880_RS19195 PF12833 Helix-turn-helix domain Y880_RS19200 PF07729 FCD domain Y880_RS19200 PF00392 Bacterial regulatory proteins, gntR family Y880_RS19210 PF00083 Sugar (and other) transporter Y880_RS19215 PF00701 Dihydrodipicolinate synthetase family Y880_RS19230 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Y880_RS19230 PF03171 2OG-Fe(II) oxygenase superfamily Y880_RS19235 PF00005 ABC transporter Y880_RS19240 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS19245 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS19250 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS19255 PF00072 Response regulator receiver domain Y880_RS19255 PF00196 Bacterial regulatory proteins, luxR family Y880_RS19265 PF13193 AMP-binding enzyme C-terminal domain Y880_RS19265 PF00501 AMP-binding enzyme Y880_RS19270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS19270 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS19270 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y880_RS19270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS19275 PF00753 Metallo-beta-lactamase superfamily Y880_RS19280 PF01820 D-ala D-ala ligase N-terminus Y880_RS19280 PF07478 D-ala D-ala ligase C-terminus Y880_RS19295 PF10282 Lactonase, 7-bladed beta-propeller Y880_RS19305 PF13533 Biotin-lipoyl like Y880_RS19310 PF00873 AcrB/AcrD/AcrF family Y880_RS19315 PF02321 Outer membrane efflux protein Y880_RS19320 PF16864 Dimerisation domain Y880_RS19320 PF00891 O-methyltransferase domain Y880_RS19330 PF03284 Phenazine biosynthesis protein A/B Y880_RS19335 PF03284 Phenazine biosynthesis protein A/B Y880_RS19345 PF01494 FAD binding domain Y880_RS19365 PF07715 TonB-dependent Receptor Plug Domain Y880_RS19365 PF00593 TonB dependent receptor Y880_RS19375 PF08021 Siderophore-interacting FAD-binding domain Y880_RS19375 PF00664 ABC transporter transmembrane region Y880_RS19375 PF00005 ABC transporter Y880_RS19375 PF04954 Siderophore-interacting protein Y880_RS19395 PF12833 Helix-turn-helix domain Y880_RS19400 PF00501 AMP-binding enzyme Y880_RS19400 PF13193 AMP-binding enzyme C-terminal domain Y880_RS19405 PF00975 Thioesterase domain Y880_RS19410 PF01817 Chorismate mutase type II Y880_RS19415 PF00425 chorismate binding enzyme Y880_RS19420 PF00436 Single-strand binding protein family Y880_RS19425 PF07690 Major Facilitator Superfamily Y880_RS19435 PF00210 Ferritin-like domain Y880_RS19440 PF06628 Catalase-related immune-responsive Y880_RS19440 PF00199 Catalase Y880_RS19445 PF01196 Ribosomal protein L17 Y880_RS19450 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Y880_RS19450 PF01000 RNA polymerase Rpb3/RpoA insert domain Y880_RS19450 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Y880_RS19455 PF00163 Ribosomal protein S4/S9 N-terminal domain Y880_RS19455 PF01479 S4 domain Y880_RS19460 PF00411 Ribosomal protein S11 Y880_RS19465 PF00416 Ribosomal protein S13/S18 Y880_RS19470 PF00444 Ribosomal protein L36 Y880_RS19475 PF00344 SecY translocase Y880_RS19480 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Y880_RS19485 PF00327 Ribosomal protein L30p/L7e Y880_RS19490 PF03719 Ribosomal protein S5, C-terminal domain Y880_RS19490 PF00333 Ribosomal protein S5, N-terminal domain Y880_RS19495 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Y880_RS19500 PF00347 Ribosomal protein L6 Y880_RS19505 PF00410 Ribosomal protein S8 Y880_RS19510 PF00253 Ribosomal protein S14p/S29e Y880_RS19515 PF00281 Ribosomal protein L5 Y880_RS19515 PF00673 ribosomal L5P family C-terminus Y880_RS19520 PF00467 KOW motif Y880_RS19520 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Y880_RS19525 PF00238 Ribosomal protein L14p/L23e Y880_RS19530 PF00366 Ribosomal protein S17 Y880_RS19535 PF00831 Ribosomal L29 protein Y880_RS19540 PF00252 Ribosomal protein L16p/L10e Y880_RS19545 PF07650 KH domain Y880_RS19545 PF00189 Ribosomal protein S3, C-terminal domain Y880_RS19550 PF00237 Ribosomal protein L22p/L17e Y880_RS19555 PF00203 Ribosomal protein S19 Y880_RS19560 PF00181 Ribosomal Proteins L2, RNA binding domain Y880_RS19560 PF03947 Ribosomal Proteins L2, C-terminal domain Y880_RS19565 PF00276 Ribosomal protein L23 Y880_RS19570 PF00573 Ribosomal protein L4/L1 family Y880_RS19575 PF00297 Ribosomal protein L3 Y880_RS19580 PF00338 Ribosomal protein S10p/S20e Y880_RS19585 PF03144 Elongation factor Tu domain 2 Y880_RS19585 PF00009 Elongation factor Tu GTP binding domain Y880_RS19585 PF14492 Elongation Factor G, domain II Y880_RS19585 PF03764 Elongation factor G, domain IV Y880_RS19585 PF00679 Elongation factor G C-terminus Y880_RS19590 PF00177 Ribosomal protein S7p/S5e Y880_RS19595 PF00164 Ribosomal protein S12/S23 Y880_RS19600 PF04998 RNA polymerase Rpb1, domain 5 Y880_RS19600 PF05000 RNA polymerase Rpb1, domain 4 Y880_RS19600 PF04983 RNA polymerase Rpb1, domain 3 Y880_RS19600 PF00623 RNA polymerase Rpb1, domain 2 Y880_RS19600 PF04997 RNA polymerase Rpb1, domain 1 Y880_RS19605 PF04560 RNA polymerase Rpb2, domain 7 Y880_RS19605 PF04563 RNA polymerase beta subunit Y880_RS19605 PF04561 RNA polymerase Rpb2, domain 2 Y880_RS19605 PF04565 RNA polymerase Rpb2, domain 3 Y880_RS19605 PF10385 RNA polymerase beta subunit external 1 domain Y880_RS19605 PF00562 RNA polymerase Rpb2, domain 6 Y880_RS19610 PF16320 Ribosomal protein L7/L12 dimerisation domain Y880_RS19610 PF00542 Ribosomal protein L7/L12 C-terminal domain Y880_RS19615 PF00466 Ribosomal protein L10 Y880_RS19620 PF00687 Ribosomal protein L1p/L10e family Y880_RS19625 PF03946 Ribosomal protein L11, N-terminal domain Y880_RS19625 PF00298 Ribosomal protein L11, RNA binding domain Y880_RS19630 PF00467 KOW motif Y880_RS19630 PF02357 Transcription termination factor nusG Y880_RS19635 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Y880_RS19665 PF03309 Type III pantothenate kinase Y880_RS19670 PF08279 HTH domain Y880_RS19670 PF02237 Biotin protein ligase C terminal domain Y880_RS19670 PF03099 Biotin/lipoate A/B protein ligase family Y880_RS19680 PF12320 Type 5 capsule protein repressor C-terminal domain Y880_RS19680 PF00149 Calcineurin-like phosphoesterase Y880_RS19690 PF13538 UvrD-like helicase C-terminal domain Y880_RS19695 PF13361 UvrD-like helicase C-terminal domain Y880_RS19695 PF00580 UvrD/REP helicase N-terminal domain Y880_RS19695 PF12705 PD-(D/E)XK nuclease superfamily Y880_RS19700 PF17946 RecC C-terminal domain Y880_RS19710 PF00892 EamA-like transporter family Y880_RS19725 PF02743 Cache domain Y880_RS19725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS19725 PF00672 HAMP domain Y880_RS19735 PF01384 Phosphate transporter family Y880_RS19755 PF00196 Bacterial regulatory proteins, luxR family Y880_RS19755 PF00072 Response regulator receiver domain Y880_RS19785 PF00437 Type II/IV secretion system protein Y880_RS19795 PF04972 BON domain Y880_RS19795 PF13629 Pilus formation protein N terminal region Y880_RS19795 PF00263 Bacterial type II and III secretion system protein Y880_RS19815 PF05872 Bacterial protein of unknown function (DUF853) Y880_RS19825 PF02743 Cache domain Y880_RS19825 PF00672 HAMP domain Y880_RS19825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS19835 PF00534 Glycosyl transferases group 1 Y880_RS19835 PF13439 Glycosyltransferase Family 4 Y880_RS19855 PF00551 Formyl transferase Y880_RS19855 PF01842 ACT domain Y880_RS19865 PF08411 Exonuclease C-terminal Y880_RS19865 PF00929 Exonuclease Y880_RS19925 PF00582 Universal stress protein family Y880_RS19930 PF02887 Pyruvate kinase, alpha/beta domain Y880_RS19930 PF00224 Pyruvate kinase, barrel domain Y880_RS19935 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS19940 PF00175 Oxidoreductase NAD-binding domain Y880_RS19940 PF00970 Oxidoreductase FAD-binding domain Y880_RS19945 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS19945 PF08448 PAS fold Y880_RS19950 PF05683 Fumarase C-terminus Y880_RS19950 PF05681 Fumarate hydratase (Fumerase) Y880_RS19955 PF01566 Natural resistance-associated macrophage protein Y880_RS19965 PF01965 DJ-1/PfpI family Y880_RS19980 PF13091 PLD-like domain Y880_RS19980 PF13396 Phospholipase_D-nuclease N-terminal Y880_RS19995 PF01425 Amidase Y880_RS20000 PF07690 Major Facilitator Superfamily Y880_RS20005 PF07687 Peptidase dimerisation domain Y880_RS20005 PF01546 Peptidase family M20/M25/M40 Y880_RS20020 PF00144 Beta-lactamase Y880_RS20020 PF11954 Domain of unknown function (DUF3471) Y880_RS20025 PF00258 Flavodoxin Y880_RS20025 PF01613 Flavin reductase like domain Y880_RS20045 PF00582 Universal stress protein family Y880_RS20065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS20070 PF09012 FeoC like transcriptional regulator Y880_RS20075 PF07664 Ferrous iron transport protein B C terminus Y880_RS20075 PF17910 FeoB cytosolic helical domain Y880_RS20075 PF02421 Ferrous iron transport protein B Y880_RS20075 PF07670 Nucleoside recognition Y880_RS20080 PF04023 FeoA domain Y880_RS20095 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Y880_RS20105 PF03466 LysR substrate binding domain Y880_RS20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS20115 PF01810 LysE type translocator Y880_RS20120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y880_RS20120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y880_RS20125 PF03707 Bacterial signalling protein N terminal repeat Y880_RS20125 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS20125 PF00563 EAL domain Y880_RS20135 PF04011 LemA family Y880_RS20160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS20165 PF00873 AcrB/AcrD/AcrF family Y880_RS20170 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Y880_RS20170 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y880_RS20190 PF00672 HAMP domain Y880_RS20190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS20190 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS20195 PF00072 Response regulator receiver domain Y880_RS20195 PF00486 Transcriptional regulatory protein, C terminal Y880_RS20210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y880_RS20220 PF00118 TCP-1/cpn60 chaperonin family Y880_RS20225 PF00166 Chaperonin 10 Kd subunit Y880_RS20230 PF04186 FxsA cytoplasmic membrane protein Y880_RS20260 PF07690 Major Facilitator Superfamily Y880_RS20265 PF00924 Mechanosensitive ion channel Y880_RS20265 PF05552 Conserved TM helix Y880_RS20270 PF04461 Protein of unknown function (DUF520) Y880_RS20275 PF00072 Response regulator receiver domain Y880_RS20280 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y880_RS20280 PF02558 Ketopantoate reductase PanE/ApbA Y880_RS20285 PF00072 Response regulator receiver domain Y880_RS20285 PF08448 PAS fold Y880_RS20285 PF13188 PAS domain Y880_RS20285 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS20285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS20290 PF01923 Cobalamin adenosyltransferase Y880_RS20295 PF00293 NUDIX domain Y880_RS20300 PF13417 Glutathione S-transferase, N-terminal domain Y880_RS20300 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS20305 PF01960 ArgJ family Y880_RS20310 PF02810 SEC-C motif Y880_RS20310 PF01043 SecA preprotein cross-linking domain Y880_RS20310 PF07516 SecA Wing and Scaffold domain Y880_RS20310 PF07517 SecA DEAD-like domain Y880_RS20320 PF01551 Peptidase family M23 Y880_RS20320 PF10145 Phage-related minor tail protein Y880_RS20320 PF01464 Transglycosylase SLT domain Y880_RS20330 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Y880_RS20335 PF00091 Tubulin/FtsZ family, GTPase domain Y880_RS20335 PF12327 FtsZ family, C-terminal domain Y880_RS20340 PF02491 SHS2 domain inserted in FTSA Y880_RS20345 PF08478 POTRA domain, FtsQ-type Y880_RS20345 PF03799 Cell division protein FtsQ Y880_RS20350 PF07478 D-ala D-ala ligase C-terminus Y880_RS20350 PF01820 D-ala D-ala ligase N-terminus Y880_RS20355 PF01225 Mur ligase family, catalytic domain Y880_RS20355 PF02875 Mur ligase family, glutamate ligase domain Y880_RS20355 PF08245 Mur ligase middle domain Y880_RS20360 PF04101 Glycosyltransferase family 28 C-terminal domain Y880_RS20360 PF03033 Glycosyltransferase family 28 N-terminal domain Y880_RS20365 PF01098 Cell cycle protein Y880_RS20370 PF08245 Mur ligase middle domain Y880_RS20370 PF02875 Mur ligase family, glutamate ligase domain Y880_RS20375 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Y880_RS20375 PF00953 Glycosyl transferase family 4 Y880_RS20380 PF08245 Mur ligase middle domain Y880_RS20380 PF02875 Mur ligase family, glutamate ligase domain Y880_RS20380 PF01225 Mur ligase family, catalytic domain Y880_RS20385 PF01225 Mur ligase family, catalytic domain Y880_RS20385 PF08245 Mur ligase middle domain Y880_RS20385 PF02875 Mur ligase family, glutamate ligase domain Y880_RS20390 PF03717 Penicillin-binding Protein dimerisation domain Y880_RS20390 PF00905 Penicillin binding protein transpeptidase domain Y880_RS20395 PF04999 Cell division protein FtsL Y880_RS20400 PF01795 MraW methylase family Y880_RS20405 PF02381 MraZ protein, putative antitoxin-like Y880_RS20415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y880_RS20425 PF02021 Uncharacterised protein family UPF0102 Y880_RS20430 PF13580 SIS domain Y880_RS20435 PF04972 BON domain Y880_RS20440 PF04386 Stringent starvation protein B Y880_RS20445 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS20445 PF02798 Glutathione S-transferase, N-terminal domain Y880_RS20450 PF02167 Cytochrome C1 family Y880_RS20455 PF00033 Cytochrome b/b6/petB Y880_RS20455 PF00032 Cytochrome b(C-terminal)/b6/petD Y880_RS20460 PF00355 Rieske [2Fe-2S] domain Y880_RS20460 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Y880_RS20465 PF00380 Ribosomal protein S9/S16 Y880_RS20470 PF00572 Ribosomal protein L13 Y880_RS20475 PF00248 Aldo/keto reductase family Y880_RS20480 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS20480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS20480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS20495 PF03969 AFG1-like ATPase Y880_RS20500 PF00579 tRNA synthetases class I (W and Y) Y880_RS20505 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Y880_RS20515 PF00009 Elongation factor Tu GTP binding domain Y880_RS20520 PF01507 Phosphoadenosine phosphosulfate reductase family Y880_RS20525 PF13406 Transglycosylase SLT domain Y880_RS20530 PF01784 NIF3 (NGG1p interacting factor 3) Y880_RS20535 PF13180 PDZ domain Y880_RS20540 PF00155 Aminotransferase class I and II Y880_RS20545 PF00815 Histidinol dehydrogenase Y880_RS20550 PF01634 ATP phosphoribosyltransferase Y880_RS20555 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y880_RS20570 PF05494 MlaC protein Y880_RS20575 PF02470 MlaD protein Y880_RS20580 PF02405 Permease MlaE Y880_RS20585 PF00005 ABC transporter Y880_RS20590 PF00571 CBS domain Y880_RS20590 PF01380 SIS domain Y880_RS20610 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y880_RS20610 PF00005 ABC transporter Y880_RS20615 PF04552 Sigma-54, DNA binding domain Y880_RS20615 PF04963 Sigma-54 factor, core binding domain Y880_RS20615 PF00309 Sigma-54 factor, Activator interacting domain (AID) Y880_RS20620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Y880_RS20625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y880_RS20630 PF03668 P-loop ATPase protein family Y880_RS20635 PF00381 PTS HPr component phosphorylation site Y880_RS20640 PF02535 ZIP Zinc transporter Y880_RS20645 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y880_RS20645 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y880_RS20655 PF00206 Lyase Y880_RS20655 PF10415 Fumarase C C-terminus Y880_RS20665 PF01523 Putative modulator of DNA gyrase Y880_RS20670 PF04751 Protein of unknown function (DUF615) Y880_RS20675 PF01523 Putative modulator of DNA gyrase Y880_RS20680 PF00795 Carbon-nitrogen hydrolase Y880_RS20690 PF00575 S1 RNA binding domain Y880_RS20690 PF10150 Ribonuclease E/G family Y880_RS20695 PF02545 Maf-like protein Y880_RS20705 PF04085 rod shape-determining protein MreC Y880_RS20715 PF02686 Glu-tRNAGln amidotransferase C subunit Y880_RS20720 PF01425 Amidase Y880_RS20725 PF02637 GatB domain Y880_RS20725 PF02934 GatB/GatE catalytic domain Y880_RS20730 PF03330 Lytic transglycolase Y880_RS20735 PF02627 Carboxymuconolactone decarboxylase family Y880_RS20740 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) Y880_RS20750 PF00207 Alpha-2-macroglobulin family Y880_RS20750 PF07703 Alpha-2-macroglobulin bait region domain Y880_RS20750 PF01835 MG2 domain Y880_RS20755 PF06672 Protein of unknown function (DUF1175) Y880_RS20760 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) Y880_RS20765 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) Y880_RS20770 PF00072 Response regulator receiver domain Y880_RS20775 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS20775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS20790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y880_RS20795 PF01321 Creatinase/Prolidase N-terminal domain Y880_RS20795 PF00557 Metallopeptidase family M24 Y880_RS20820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y880_RS20825 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS20830 PF12911 N-terminal TM domain of oligopeptide transport permease C Y880_RS20830 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS20835 PF00005 ABC transporter Y880_RS20835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y880_RS20840 PF00005 ABC transporter Y880_RS20840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y880_RS20850 PF01037 Lrp/AsnC ligand binding domain Y880_RS20855 PF02626 Carboxyltransferase domain, subdomain A and B Y880_RS20865 PF03746 LamB/YcsF family Y880_RS20875 PF00175 Oxidoreductase NAD-binding domain Y880_RS20875 PF00667 FAD binding domain Y880_RS20875 PF00258 Flavodoxin Y880_RS20880 PF00593 TonB dependent receptor Y880_RS20880 PF07715 TonB-dependent Receptor Plug Domain Y880_RS20885 PF18331 PKHD-type hydroxylase C-terminal domain Y880_RS20885 PF13640 2OG-Fe(II) oxygenase superfamily Y880_RS20895 PF00884 Sulfatase Y880_RS20905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y880_RS20905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y880_RS20920 PF01510 N-acetylmuramoyl-L-alanine amidase Y880_RS20930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Y880_RS20930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Y880_RS20940 PF00114 Pilin (bacterial filament) Y880_RS20940 PF07963 Prokaryotic N-terminal methylation motif Y880_RS20945 PF00437 Type II/IV secretion system protein Y880_RS20945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y880_RS20950 PF00482 Type II secretion system (T2SS), protein F Y880_RS20955 PF06750 Bacterial Peptidase A24 N-terminal domain Y880_RS20955 PF01478 Type IV leader peptidase family Y880_RS20960 PF01121 Dephospho-CoA kinase Y880_RS20965 PF03884 DNA gyrase inhibitor YacG Y880_RS21005 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS21010 PF03969 AFG1-like ATPase Y880_RS21015 PF08479 POTRA domain, ShlB-type Y880_RS21015 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y880_RS21020 PF05860 haemagglutination activity domain Y880_RS21040 PF07724 AAA domain (Cdc48 subfamily) Y880_RS21040 PF17871 AAA lid domain Y880_RS21040 PF02861 Clp amino terminal domain, pathogenicity island component Y880_RS21040 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS21040 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS21045 PF02578 Multi-copper polyphenol oxidoreductase laccase Y880_RS21050 PF00849 RNA pseudouridylate synthase Y880_RS21050 PF01479 S4 domain Y880_RS21055 PF13525 Outer membrane lipoprotein Y880_RS21065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS21065 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS21070 PF00072 Response regulator receiver domain Y880_RS21070 PF02954 Bacterial regulatory protein, Fis family Y880_RS21070 PF00158 Sigma-54 interaction domain Y880_RS21075 PF01266 FAD dependent oxidoreductase Y880_RS21085 PF07963 Prokaryotic N-terminal methylation motif Y880_RS21085 PF00114 Pilin (bacterial filament) Y880_RS21105 PF05567 Neisseria PilC beta-propeller domain Y880_RS21115 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor Y880_RS21115 PF07963 Prokaryotic N-terminal methylation motif Y880_RS21120 PF02401 LytB protein Y880_RS21125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y880_RS21130 PF01252 Signal peptidase (SPase) II Y880_RS21135 PF00133 tRNA synthetases class I (I, L, M and V) Y880_RS21135 PF08264 Anticodon-binding domain of tRNA Y880_RS21135 PF06827 Zinc finger found in FPG and IleRS Y880_RS21140 PF06574 FAD synthetase Y880_RS21140 PF01687 Riboflavin kinase Y880_RS21145 PF03023 Lipid II flippase MurJ Y880_RS21150 PF01649 Ribosomal protein S20 Y880_RS21155 PF05981 CreA protein Y880_RS21160 PF01472 PUA domain Y880_RS21160 PF00696 Amino acid kinase family Y880_RS21165 PF01926 50S ribosome-binding GTPase Y880_RS21165 PF01018 GTP1/OBG Y880_RS21170 PF01016 Ribosomal L27 protein Y880_RS21175 PF00829 Ribosomal prokaryotic L21 protein Y880_RS21180 PF00348 Polyprenyl synthetase Y880_RS21190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS21190 PF00034 Cytochrome c Y880_RS21195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y880_RS21195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y880_RS21205 PF03350 Uncharacterized protein family, UPF0114 Y880_RS21215 PF05362 Lon protease (S16) C-terminal proteolytic domain Y880_RS21215 PF13654 AAA domain Y880_RS21240 PF06956 Regulator of RNA terminal phosphate cyclase Y880_RS21240 PF00158 Sigma-54 interaction domain Y880_RS21255 PF01139 tRNA-splicing ligase RtcB Y880_RS21260 PF10127 RNA repair pathway DNA polymerase beta family Y880_RS21265 PF01137 RNA 3'-terminal phosphate cyclase Y880_RS21265 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain Y880_RS21275 PF03150 Di-haem cytochrome c peroxidase Y880_RS21275 PF00034 Cytochrome c Y880_RS21280 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y880_RS21280 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y880_RS21305 PF00005 ABC transporter Y880_RS21305 PF12704 MacB-like periplasmic core domain Y880_RS21305 PF02687 FtsX-like permease family Y880_RS21310 PF00005 ABC transporter Y880_RS21310 PF02687 FtsX-like permease family Y880_RS21310 PF12704 MacB-like periplasmic core domain Y880_RS21315 PF00005 ABC transporter Y880_RS21315 PF12848 ABC transporter Y880_RS21330 PF02321 Outer membrane efflux protein Y880_RS21335 PF00873 AcrB/AcrD/AcrF family Y880_RS21340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS21340 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS21350 PF03707 Bacterial signalling protein N terminal repeat Y880_RS21350 PF00563 EAL domain Y880_RS21350 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS21355 PF00464 Serine hydroxymethyltransferase Y880_RS21365 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y880_RS21365 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y880_RS21370 PF04328 Selenoprotein, putative Y880_RS21375 PF13722 5TM C-terminal transporter carbon starvation CstA Y880_RS21375 PF02554 Carbon starvation protein CstA Y880_RS21385 PF07238 PilZ domain Y880_RS21390 PF18073 Rubredoxin metal binding domain Y880_RS21410 PF06628 Catalase-related immune-responsive Y880_RS21410 PF00199 Catalase Y880_RS21420 PF01741 Large-conductance mechanosensitive channel, MscL Y880_RS21425 PF00175 Oxidoreductase NAD-binding domain Y880_RS21425 PF00970 Oxidoreductase FAD-binding domain Y880_RS21430 PF03480 Bacterial extracellular solute-binding protein, family 7 Y880_RS21435 PF05175 Methyltransferase small domain Y880_RS21445 PF13478 XdhC Rossmann domain Y880_RS21445 PF02625 XdhC and CoxI family Y880_RS21450 PF00034 Cytochrome c Y880_RS21450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS21455 PF01799 [2Fe-2S] binding domain Y880_RS21455 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS21460 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y880_RS21480 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y880_RS21480 PF17287 POTRA domain Y880_RS21480 PF08479 POTRA domain, ShlB-type Y880_RS21490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y880_RS21490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y880_RS21495 PF05175 Methyltransferase small domain Y880_RS21495 PF08468 Methyltransferase small domain N-terminal Y880_RS21500 PF00324 Amino acid permease Y880_RS21505 PF01169 Uncharacterized protein family UPF0016 Y880_RS21520 PF01435 Peptidase family M48 Y880_RS21525 PF00672 HAMP domain Y880_RS21525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS21530 PF02586 SOS response associated peptidase (SRAP) Y880_RS21535 PF02308 MgtC family Y880_RS21570 PF06039 Malate:quinone oxidoreductase (Mqo) Y880_RS21595 PF00156 Phosphoribosyl transferase domain Y880_RS21605 PF00860 Permease family Y880_RS21645 PF00762 Ferrochelatase Y880_RS21650 PF01370 NAD dependent epimerase/dehydratase family Y880_RS21650 PF08338 Domain of unknown function (DUF1731) Y880_RS21655 PF01593 Flavin containing amine oxidoreductase Y880_RS21665 PF13411 MerR HTH family regulatory protein Y880_RS21670 PF00875 DNA photolyase Y880_RS21670 PF03441 FAD binding domain of DNA photolyase Y880_RS21675 PF09411 Lipid A 3-O-deacylase (PagL) Y880_RS21680 PF01177 Asp/Glu/Hydantoin racemase Y880_RS21685 PF00899 ThiF family Y880_RS21690 PF05175 Methyltransferase small domain Y880_RS21690 PF17827 PrmC N-terminal domain Y880_RS21695 PF00472 RF-1 domain Y880_RS21695 PF03462 PCRF domain Y880_RS21700 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Y880_RS21700 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Y880_RS21700 PF01488 Shikimate / quinate 5-dehydrogenase Y880_RS21710 PF03550 Outer membrane lipoprotein LolB Y880_RS21715 PF00288 GHMP kinases N terminal domain Y880_RS21715 PF08544 GHMP kinases C terminal Y880_RS21725 PF14572 Phosphoribosyl synthetase-associated domain Y880_RS21725 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Y880_RS21730 PF01386 Ribosomal L25p family Y880_RS21730 PF14693 Ribosomal protein TL5, C-terminal domain Y880_RS21735 PF01195 Peptidyl-tRNA hydrolase Y880_RS21740 PF06071 Protein of unknown function (DUF933) Y880_RS21740 PF01926 50S ribosome-binding GTPase Y880_RS21750 PF02899 Phage integrase, N-terminal SAM-like domain Y880_RS21750 PF00589 Phage integrase family Y880_RS21760 PF05707 Zonular occludens toxin (Zot) Y880_RS21830 PF01381 Helix-turn-helix Y880_RS21835 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB Y880_RS21845 PF00593 TonB dependent receptor Y880_RS21845 PF07715 TonB-dependent Receptor Plug Domain Y880_RS21850 PF00484 Carbonic anhydrase Y880_RS21860 PF00583 Acetyltransferase (GNAT) family Y880_RS21905 PF01547 Bacterial extracellular solute-binding protein Y880_RS21910 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS21915 PF02470 MlaD protein Y880_RS21920 PF04403 Paraquat-inducible protein A Y880_RS21925 PF04403 Paraquat-inducible protein A Y880_RS21930 PF01794 Ferric reductase like transmembrane component Y880_RS21935 PF00174 Oxidoreductase molybdopterin binding domain Y880_RS21940 PF01066 CDP-alcohol phosphatidyltransferase Y880_RS21945 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Y880_RS21945 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Y880_RS21950 PF10369 Small subunit of acetolactate synthase Y880_RS21955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y880_RS21955 PF00205 Thiamine pyrophosphate enzyme, central domain Y880_RS21955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y880_RS21965 PF04287 tRNA pseudouridine synthase C Y880_RS21975 PF00912 Transglycosylase Y880_RS21975 PF14814 Bifunctional transglycosylase second domain Y880_RS21975 PF00905 Penicillin binding protein transpeptidase domain Y880_RS21995 PF00027 Cyclic nucleotide-binding domain Y880_RS22015 PF01497 Periplasmic binding protein Y880_RS22020 PF05171 Haemin-degrading HemS.ChuX domain Y880_RS22025 PF07715 TonB-dependent Receptor Plug Domain Y880_RS22025 PF00593 TonB dependent receptor Y880_RS22050 PF00155 Aminotransferase class I and II Y880_RS22055 PF02567 Phenazine biosynthesis-like protein Y880_RS22060 PF04228 Putative neutral zinc metallopeptidase Y880_RS22070 PF00860 Permease family Y880_RS22075 PF05958 tRNA (Uracil-5-)-methyltransferase Y880_RS22080 PF03749 Sugar fermentation stimulation protein RE domain Y880_RS22080 PF17746 SfsA N-terminal OB domain Y880_RS22085 PF00155 Aminotransferase class I and II Y880_RS22090 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y880_RS22105 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS22105 PF00989 PAS fold Y880_RS22105 PF08447 PAS fold Y880_RS22105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS22110 PF00072 Response regulator receiver domain Y880_RS22110 PF00158 Sigma-54 interaction domain Y880_RS22110 PF02954 Bacterial regulatory protein, Fis family Y880_RS22115 PF12627 Probable RNA and SrmB- binding site of polymerase A Y880_RS22115 PF12626 Polymerase A arginine-rich C-terminus Y880_RS22115 PF01743 Poly A polymerase head domain Y880_RS22120 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Y880_RS22125 PF02548 Ketopantoate hydroxymethyltransferase Y880_RS22130 PF02569 Pantoate-beta-alanine ligase Y880_RS22135 PF02261 Aspartate decarboxylase Y880_RS22140 PF00342 Phosphoglucose isomerase Y880_RS22145 PF13193 AMP-binding enzyme C-terminal domain Y880_RS22145 PF16177 Acetyl-coenzyme A synthetase N-terminus Y880_RS22145 PF00501 AMP-binding enzyme Y880_RS22170 PF05532 CsbD-like Y880_RS22175 PF04972 BON domain Y880_RS22180 PF01138 3' exoribonuclease family, domain 1 Y880_RS22180 PF00575 S1 RNA binding domain Y880_RS22180 PF00013 KH domain Y880_RS22180 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Y880_RS22180 PF03725 3' exoribonuclease family, domain 2 Y880_RS22190 PF00312 Ribosomal protein S15 Y880_RS22195 PF16198 tRNA pseudouridylate synthase B C-terminal domain Y880_RS22195 PF09157 Pseudouridine synthase II TruB, C-terminal Y880_RS22195 PF01509 TruB family pseudouridylate synthase (N terminal domain) Y880_RS22200 PF02033 Ribosome-binding factor A Y880_RS22205 PF04760 Translation initiation factor IF-2, N-terminal region Y880_RS22205 PF08364 Bacterial translation initiation factor IF-2 associated region Y880_RS22205 PF11987 Translation-initiation factor 2 Y880_RS22205 PF00009 Elongation factor Tu GTP binding domain Y880_RS22210 PF13184 NusA-like KH domain Y880_RS22210 PF08529 NusA N-terminal domain Y880_RS22210 PF00575 S1 RNA binding domain Y880_RS22215 PF17384 RimP C-terminal SH3 domain Y880_RS22215 PF02576 RimP N-terminal domain Y880_RS22230 PF03840 Preprotein translocase SecG subunit Y880_RS22235 PF00121 Triosephosphate isomerase Y880_RS22240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y880_RS22240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y880_RS22240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y880_RS22240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y880_RS22245 PF00809 Pterin binding enzyme Y880_RS22250 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS22250 PF17862 AAA+ lid domain Y880_RS22250 PF06480 FtsH Extracellular Y880_RS22250 PF01434 Peptidase family M41 Y880_RS22255 PF01728 FtsJ-like methyltransferase Y880_RS22260 PF01985 CRS1 / YhbY (CRM) domain Y880_RS22270 PF01272 Transcription elongation factor, GreA/GreB, C-term Y880_RS22270 PF03449 Transcription elongation factor, N-terminal Y880_RS22275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y880_RS22275 PF02142 MGS-like domain Y880_RS22275 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y880_RS22280 PF01810 LysE type translocator Y880_RS22285 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Y880_RS22285 PF00117 Glutamine amidotransferase class-I Y880_RS22290 PF05173 Dihydrodipicolinate reductase, C-terminus Y880_RS22290 PF01113 Dihydrodipicolinate reductase, N-terminus Y880_RS22295 PF00684 DnaJ central domain Y880_RS22295 PF00226 DnaJ domain Y880_RS22295 PF01556 DnaJ C terminal domain Y880_RS22300 PF00012 Hsp70 protein Y880_RS22305 PF01025 GrpE Y880_RS22315 PF02463 RecF/RecN/SMC N terminal domain Y880_RS22320 PF01475 Ferric uptake regulator family Y880_RS22325 PF04355 SmpA / OmlA family Y880_RS22330 PF03658 RnfH family Ubiquitin Y880_RS22335 PF03364 Polyketide cyclase / dehydrase and lipid transport Y880_RS22340 PF01668 SmpB protein Y880_RS22345 PF00392 Bacterial regulatory proteins, gntR family Y880_RS22345 PF07729 FCD domain Y880_RS22350 PF02652 L-lactate permease Y880_RS22355 PF01070 FMN-dependent dehydrogenase Y880_RS22365 PF02675 S-adenosylmethionine decarboxylase Y880_RS22370 PF17284 Spermidine synthase tetramerisation domain Y880_RS22380 PF00072 Response regulator receiver domain Y880_RS22380 PF00486 Transcriptional regulatory protein, C terminal Y880_RS22385 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS22385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS22390 PF09278 MerR, DNA binding Y880_RS22390 PF00376 MerR family regulatory protein Y880_RS22400 PF00892 EamA-like transporter family Y880_RS22410 PF00072 Response regulator receiver domain Y880_RS22420 PF00892 EamA-like transporter family Y880_RS22425 PF01037 Lrp/AsnC ligand binding domain Y880_RS22430 PF02803 Thiolase, C-terminal domain Y880_RS22430 PF00108 Thiolase, N-terminal domain Y880_RS22440 PF12833 Helix-turn-helix domain Y880_RS22440 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS22455 PF13847 Methyltransferase domain Y880_RS22465 PF03009 Glycerophosphoryl diester phosphodiesterase family Y880_RS22485 PF01597 Glycine cleavage H-protein Y880_RS22490 PF04229 GrpB protein Y880_RS22525 PF13520 Amino acid permease Y880_RS22530 PF00202 Aminotransferase class-III Y880_RS22540 PF09106 Elongation factor SelB, winged helix Y880_RS22540 PF03144 Elongation factor Tu domain 2 Y880_RS22540 PF09107 Elongation factor SelB, winged helix Y880_RS22540 PF00009 Elongation factor Tu GTP binding domain Y880_RS22550 PF04216 Protein involved in formate dehydrogenase formation Y880_RS22555 PF01292 Prokaryotic cytochrome b561 Y880_RS22560 PF13247 4Fe-4S dicluster domain Y880_RS22560 PF09163 Formate dehydrogenase N, transmembrane Y880_RS22570 PF00561 alpha/beta hydrolase fold Y880_RS22600 PF00535 Glycosyl transferase family 2 Y880_RS22610 PF01554 MatE Y880_RS22635 PF00689 Cation transporting ATPase, C-terminus Y880_RS22635 PF00690 Cation transporter/ATPase, N-terminus Y880_RS22645 PF00797 N-acetyltransferase Y880_RS22655 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS22655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y880_RS22670 PF00106 short chain dehydrogenase Y880_RS22675 PF03006 Haemolysin-III related Y880_RS22680 PF00892 EamA-like transporter family Y880_RS22685 PF10100 Staphylopine dehydrogenase Y880_RS22690 PF03059 Nicotianamine synthase protein Y880_RS22695 PF07715 TonB-dependent Receptor Plug Domain Y880_RS22695 PF00593 TonB dependent receptor Y880_RS22705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y880_RS22705 PF17944 Arginine decarboxylase C-terminal helical extension Y880_RS22705 PF17810 Arginine decarboxylase helical bundle domain Y880_RS22710 PF01253 Translation initiation factor SUI1 Y880_RS22715 PF00293 NUDIX domain Y880_RS22730 PF00072 Response regulator receiver domain Y880_RS22730 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS22730 PF00563 EAL domain Y880_RS22735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS22740 PF02683 Cytochrome C biogenesis protein transmembrane region Y880_RS22740 PF11412 Disulphide bond corrector protein DsbC Y880_RS22745 PF01220 Dehydroquinase class II Y880_RS22755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y880_RS22755 PF00289 Biotin carboxylase, N-terminal domain Y880_RS22755 PF02785 Biotin carboxylase C-terminal domain Y880_RS22775 PF01207 Dihydrouridine synthase (Dus) Y880_RS22780 PF02954 Bacterial regulatory protein, Fis family Y880_RS22785 PF02142 MGS-like domain Y880_RS22785 PF01808 AICARFT/IMPCHase bienzyme Y880_RS22790 PF02844 Phosphoribosylglycinamide synthetase, N domain Y880_RS22790 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Y880_RS22790 PF02843 Phosphoribosylglycinamide synthetase, C domain Y880_RS22795 PF01627 Hpt domain Y880_RS22795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y880_RS22795 PF00072 Response regulator receiver domain Y880_RS22795 PF00672 HAMP domain Y880_RS22795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS22795 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS22800 PF01914 MarC family integral membrane protein Y880_RS22805 PF13458 Periplasmic binding protein Y880_RS22810 PF02653 Branched-chain amino acid transport system / permease component Y880_RS22815 PF02653 Branched-chain amino acid transport system / permease component Y880_RS22820 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y880_RS22820 PF00005 ABC transporter Y880_RS22825 PF00005 ABC transporter Y880_RS22840 PF00547 Urease, gamma subunit Y880_RS22850 PF00699 Urease beta subunit Y880_RS22855 PF01979 Amidohydrolase family Y880_RS22855 PF00449 Urease alpha-subunit, N-terminal domain Y880_RS22865 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y880_RS22880 PF00012 Hsp70 protein Y880_RS22905 PF13411 MerR HTH family regulatory protein Y880_RS22910 PF05170 AsmA family Y880_RS22915 PF00210 Ferritin-like domain Y880_RS22925 PF00174 Oxidoreductase molybdopterin binding domain Y880_RS22930 PF01292 Prokaryotic cytochrome b561 Y880_RS22940 PF00486 Transcriptional regulatory protein, C terminal Y880_RS22940 PF00072 Response regulator receiver domain Y880_RS22945 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS22945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS22945 PF00672 HAMP domain Y880_RS22955 PF00487 Fatty acid desaturase Y880_RS22965 PF00440 Bacterial regulatory proteins, tetR family Y880_RS22970 PF05194 UreE urease accessory protein, C-terminal domain Y880_RS22970 PF02814 UreE urease accessory protein, N-terminal domain Y880_RS22975 PF01730 UreF Y880_RS22980 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y880_RS22985 PF04955 HupE / UreJ protein Y880_RS22995 PF04542 Sigma-70 region 2 Y880_RS22995 PF08281 Sigma-70, region 4 Y880_RS23005 PF03573 outer membrane porin, OprD family Y880_RS23010 PF00171 Aldehyde dehydrogenase family Y880_RS23020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y880_RS23020 PF00205 Thiamine pyrophosphate enzyme, central domain Y880_RS23020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y880_RS23025 PF03466 LysR substrate binding domain Y880_RS23025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS23035 PF00355 Rieske [2Fe-2S] domain Y880_RS23040 PF00175 Oxidoreductase NAD-binding domain Y880_RS23040 PF00111 2Fe-2S iron-sulfur cluster binding domain Y880_RS23050 PF00106 short chain dehydrogenase Y880_RS23055 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y880_RS23060 PF00005 ABC transporter Y880_RS23065 PF00005 ABC transporter Y880_RS23065 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y880_RS23070 PF02653 Branched-chain amino acid transport system / permease component Y880_RS23070 PF11862 Domain of unknown function (DUF3382) Y880_RS23075 PF02653 Branched-chain amino acid transport system / permease component Y880_RS23080 PF13458 Periplasmic binding protein Y880_RS23085 PF03466 LysR substrate binding domain Y880_RS23085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS23090 PF12729 Four helix bundle sensory module for signal transduction Y880_RS23090 PF00672 HAMP domain Y880_RS23090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS23100 PF01467 Cytidylyltransferase-like Y880_RS23110 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y880_RS23110 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Y880_RS23115 PF02540 NAD synthase Y880_RS23125 PF00127 Copper binding proteins, plastocyanin/azurin family Y880_RS23130 PF03641 Possible lysine decarboxylase Y880_RS23135 PF01476 LysM domain Y880_RS23135 PF01551 Peptidase family M23 Y880_RS23140 PF05552 Conserved TM helix Y880_RS23140 PF00924 Mechanosensitive ion channel Y880_RS23145 PF01841 Transglutaminase-like superfamily Y880_RS23145 PF08379 Bacterial transglutaminase-like N-terminal region Y880_RS23150 PF14403 Circularly permuted ATP-grasp type 2 Y880_RS23150 PF04168 A predicted alpha-helical domain with a conserved ER motif. Y880_RS23155 PF08497 Radical SAM N-terminal Y880_RS23155 PF04055 Radical SAM superfamily Y880_RS23155 PF11842 Domain of unknown function (DUF3362) Y880_RS23160 PF03707 Bacterial signalling protein N terminal repeat Y880_RS23160 PF00563 EAL domain Y880_RS23160 PF13188 PAS domain Y880_RS23160 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS23165 PF00842 Alanine racemase, C-terminal domain Y880_RS23165 PF01168 Alanine racemase, N-terminal domain Y880_RS23170 PF03796 DnaB-like helicase C terminal domain Y880_RS23170 PF00772 DnaB-like helicase N terminal domain Y880_RS23175 PF03948 Ribosomal protein L9, C-terminal domain Y880_RS23175 PF01281 Ribosomal protein L9, N-terminal domain Y880_RS23185 PF01084 Ribosomal protein S18 Y880_RS23190 PF01250 Ribosomal protein S6 Y880_RS23195 PF00588 SpoU rRNA Methylase family Y880_RS23195 PF08032 RNA 2'-O ribose methyltransferase substrate binding Y880_RS23200 PF00773 RNB domain Y880_RS23200 PF08206 Ribonuclease B OB domain Y880_RS23200 PF08461 Ribonuclease R winged-helix domain Y880_RS23200 PF17876 Cold shock domain Y880_RS23200 PF00575 S1 RNA binding domain Y880_RS23215 PF00709 Adenylosuccinate synthetase Y880_RS23220 PF13393 Histidyl-tRNA synthetase Y880_RS23230 PF01145 SPFH domain / Band 7 family Y880_RS23235 PF01145 SPFH domain / Band 7 family Y880_RS23240 PF16360 GTP-binding GTPase Middle Region Y880_RS23240 PF13167 GTP-binding GTPase N-terminal Y880_RS23240 PF01926 50S ribosome-binding GTPase Y880_RS23245 PF17209 Hfq protein Y880_RS23255 PF08676 MutL C terminal dimerisation domain Y880_RS23255 PF01119 DNA mismatch repair protein, C-terminal domain Y880_RS23260 PF01520 N-acetylmuramoyl-L-alanine amidase Y880_RS23260 PF11741 AMIN domain Y880_RS23265 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Y880_RS23275 PF08331 Domain of unknown function (DUF1730) Y880_RS23280 PF00929 Exonuclease Y880_RS23285 PF03193 RsgA GTPase Y880_RS23290 PF00691 OmpA family Y880_RS23290 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y880_RS23295 PF01618 MotA/TolQ/ExbB proton channel family Y880_RS23305 PF00581 Rhodanese-like domain Y880_RS23310 PF02666 Phosphatidylserine decarboxylase Y880_RS23325 PF00563 EAL domain Y880_RS23325 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS23325 PF03707 Bacterial signalling protein N terminal repeat Y880_RS23340 PF04307 LexA-binding, inner membrane-associated putative hydrolase Y880_RS23350 PF03989 DNA gyrase C-terminal domain, beta-propeller Y880_RS23350 PF00521 DNA gyrase/topoisomerase IV, subunit A Y880_RS23365 PF01751 Toprim domain Y880_RS23365 PF00986 DNA gyrase B subunit, carboxyl terminus Y880_RS23365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS23365 PF00204 DNA gyrase B Y880_RS23370 PF05728 Uncharacterised protein family (UPF0227) Y880_RS23375 PF00149 Calcineurin-like phosphoesterase Y880_RS23385 PF00293 NUDIX domain Y880_RS23395 PF13667 ThiC-associated domain Y880_RS23395 PF01964 Radical SAM ThiC family Y880_RS23400 PF02321 Outer membrane efflux protein Y880_RS23405 PF02525 Flavodoxin-like fold Y880_RS23410 PF00155 Aminotransferase class I and II Y880_RS23425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS23425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS23425 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS23435 PF00324 Amino acid permease Y880_RS23450 PF00072 Response regulator receiver domain Y880_RS23450 PF00486 Transcriptional regulatory protein, C terminal Y880_RS23475 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Y880_RS23485 PF00893 Small Multidrug Resistance protein Y880_RS23490 PF01266 FAD dependent oxidoreductase Y880_RS23495 PF00248 Aldo/keto reductase family Y880_RS23505 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS23505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS23505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS23510 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS23510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS23510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS23515 PF13537 Glutamine amidotransferase domain Y880_RS23515 PF00733 Asparagine synthase Y880_RS23520 PF01467 Cytidylyltransferase-like Y880_RS23520 PF00294 pfkB family carbohydrate kinase Y880_RS23525 PF00664 ABC transporter transmembrane region Y880_RS23525 PF00005 ABC transporter Y880_RS23535 PF04932 O-Antigen ligase Y880_RS23540 PF00535 Glycosyl transferase family 2 Y880_RS23560 PF00534 Glycosyl transferases group 1 Y880_RS23565 PF02543 Carbamoyltransferase N-terminus Y880_RS23565 PF16861 Carbamoyltransferase C-terminus Y880_RS23590 PF13439 Glycosyltransferase Family 4 Y880_RS23590 PF00534 Glycosyl transferases group 1 Y880_RS23595 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y880_RS23600 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y880_RS23605 PF01063 Amino-transferase class IV Y880_RS23610 PF08335 GlnD PII-uridylyltransferase Y880_RS23610 PF03710 Glutamate-ammonia ligase adenylyltransferase Y880_RS23615 PF17831 Pyruvate dehydrogenase E1 component middle domain Y880_RS23615 PF00456 Transketolase, thiamine diphosphate binding domain Y880_RS23635 PF00563 EAL domain Y880_RS23635 PF03707 Bacterial signalling protein N terminal repeat Y880_RS23635 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS23640 PF01625 Peptide methionine sulfoxide reductase Y880_RS23645 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Y880_RS23650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS23650 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS23650 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y880_RS23650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS23660 PF02080 TrkA-C domain Y880_RS23660 PF00999 Sodium/hydrogen exchanger family Y880_RS23660 PF03471 Transporter associated domain Y880_RS23665 PF00924 Mechanosensitive ion channel Y880_RS23665 PF12795 Mechanosensitive ion channel porin domain Y880_RS23665 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y880_RS23670 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Y880_RS23675 PF01925 Sulfite exporter TauE/SafE Y880_RS23680 PF01053 Cys/Met metabolism PLP-dependent enzyme Y880_RS23695 PF13614 AAA domain Y880_RS23700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS23700 PF03466 LysR substrate binding domain Y880_RS23705 PF07690 Major Facilitator Superfamily Y880_RS23710 PF00106 short chain dehydrogenase Y880_RS23725 PF01208 Uroporphyrinogen decarboxylase (URO-D) Y880_RS23730 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS23730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y880_RS23735 PF01493 GXGXG motif Y880_RS23735 PF00310 Glutamine amidotransferases class-II Y880_RS23735 PF01645 Conserved region in glutamate synthase Y880_RS23735 PF04898 Glutamate synthase central domain Y880_RS23745 PF01761 3-dehydroquinate synthase Y880_RS23750 PF01202 Shikimate kinase Y880_RS23755 PF11741 AMIN domain Y880_RS23755 PF03958 Bacterial type II/III secretion system short domain Y880_RS23755 PF00263 Bacterial type II and III secretion system protein Y880_RS23755 PF07660 Secretin and TonB N terminus short domain Y880_RS23760 PF04351 Pilus assembly protein, PilP Y880_RS23765 PF04350 Pilus assembly protein, PilO Y880_RS23770 PF05137 Fimbrial assembly protein (PilN) Y880_RS23775 PF11104 Type IV pilus assembly protein PilM; Y880_RS23780 PF00912 Transglycosylase Y880_RS23780 PF17092 Penicillin-binding protein OB-like domain Y880_RS23780 PF00905 Penicillin binding protein transpeptidase domain Y880_RS23785 PF00390 Malic enzyme, N-terminal domain Y880_RS23785 PF03949 Malic enzyme, NAD binding domain Y880_RS23800 PF01197 Ribosomal protein L31 Y880_RS23805 PF00271 Helicase conserved C-terminal domain Y880_RS23805 PF00270 DEAD/DEAH box helicase Y880_RS23805 PF17764 3′ DNA-binding domain (3′BD) Y880_RS23805 PF18074 Primosomal protein N C-terminal domain Y880_RS23805 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Y880_RS23810 PF05746 DALR anticodon binding domain Y880_RS23810 PF03485 Arginyl tRNA synthetase N terminal domain Y880_RS23810 PF00750 tRNA synthetases class I (R) Y880_RS23820 PF00227 Proteasome subunit Y880_RS23825 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS23825 PF07724 AAA domain (Cdc48 subfamily) Y880_RS23840 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Y880_RS23845 PF00561 alpha/beta hydrolase fold Y880_RS23850 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Y880_RS23875 PF01209 ubiE/COQ5 methyltransferase family Y880_RS23885 PF03109 ABC1 family Y880_RS23890 PF01502 Phosphoribosyl-AMP cyclohydrolase Y880_RS23895 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Y880_RS23900 PF02416 mttA/Hcf106 family Y880_RS23905 PF02416 mttA/Hcf106 family Y880_RS23910 PF00902 Sec-independent protein translocase protein (TatC) Y880_RS23920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS23920 PF16591 Helical bimodular sensor domain Y880_RS23920 PF00672 HAMP domain Y880_RS23925 PF03682 Uncharacterised protein family (UPF0158) Y880_RS23930 PF00005 ABC transporter Y880_RS23935 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS23940 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS23945 PF00535 Glycosyl transferase family 2 Y880_RS23950 PF04349 Periplasmic glucan biosynthesis protein, MdoG Y880_RS23955 PF02580 D-Tyr-tRNA(Tyr) deacylase Y880_RS23960 PF00561 alpha/beta hydrolase fold Y880_RS23965 PF00293 NUDIX domain Y880_RS23970 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS23975 PF01042 Endoribonuclease L-PSP Y880_RS23980 PF01266 FAD dependent oxidoreductase Y880_RS23985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS23985 PF03466 LysR substrate binding domain Y880_RS24005 PF13396 Phospholipase_D-nuclease N-terminal Y880_RS24005 PF13091 PLD-like domain Y880_RS24010 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS24020 PF01979 Amidohydrolase family Y880_RS24025 PF00221 Aromatic amino acid lyase Y880_RS24030 PF00005 ABC transporter Y880_RS24030 PF00571 CBS domain Y880_RS24035 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS24045 PF00324 Amino acid permease Y880_RS24050 PF00221 Aromatic amino acid lyase Y880_RS24055 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y880_RS24060 PF17392 Urocanase C-terminal domain Y880_RS24060 PF17391 Urocanase N-terminal domain Y880_RS24060 PF01175 Urocanase Rossmann-like domain Y880_RS24080 PF05962 HutD Y880_RS24085 PF07702 UTRA domain Y880_RS24085 PF00392 Bacterial regulatory proteins, gntR family Y880_RS24090 PF01979 Amidohydrolase family Y880_RS24095 PF08212 Lipocalin-like domain Y880_RS24110 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Y880_RS24115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS24120 PF03797 Autotransporter beta-domain Y880_RS24120 PF00657 GDSL-like Lipase/Acylhydrolase Y880_RS24145 PF03144 Elongation factor Tu domain 2 Y880_RS24145 PF00679 Elongation factor G C-terminus Y880_RS24145 PF00009 Elongation factor Tu GTP binding domain Y880_RS24150 PF02926 THUMP domain Y880_RS24150 PF02568 Thiamine biosynthesis protein (ThiI) Y880_RS24160 PF00120 Glutamine synthetase, catalytic domain Y880_RS24160 PF03951 Glutamine synthetase, beta-Grasp domain Y880_RS24170 PF00924 Mechanosensitive ion channel Y880_RS24185 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS24185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS24185 PF00989 PAS fold Y880_RS24190 PF00072 Response regulator receiver domain Y880_RS24190 PF02954 Bacterial regulatory protein, Fis family Y880_RS24190 PF00158 Sigma-54 interaction domain Y880_RS24205 PF00588 SpoU rRNA Methylase family Y880_RS24210 PF02556 Preprotein translocase subunit SecB Y880_RS24215 PF00462 Glutaredoxin Y880_RS24225 PF01676 Metalloenzyme superfamily Y880_RS24225 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Y880_RS24240 PF03572 Peptidase family S41 Y880_RS24240 PF13180 PDZ domain Y880_RS24245 PF04748 Divergent polysaccharide deacetylase Y880_RS24270 PF00977 Histidine biosynthesis protein Y880_RS24275 PF00977 Histidine biosynthesis protein Y880_RS24285 PF00117 Glutamine amidotransferase class-I Y880_RS24290 PF00475 Imidazoleglycerol-phosphate dehydratase Y880_RS24305 PF01266 FAD dependent oxidoreductase Y880_RS24315 PF14815 NUDIX domain Y880_RS24315 PF00730 HhH-GPD superfamily base excision DNA repair protein Y880_RS24315 PF10576 Iron-sulfur binding domain of endonuclease III Y880_RS24315 PF00633 Helix-hairpin-helix motif Y880_RS24320 PF04362 Bacterial Fe(2+) trafficking Y880_RS24325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y880_RS24325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y880_RS24345 PF00005 ABC transporter Y880_RS24350 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS24355 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS24360 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS24370 PF01047 MarR family Y880_RS24375 PF02321 Outer membrane efflux protein Y880_RS24380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS24380 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS24385 PF07690 Major Facilitator Superfamily Y880_RS24395 PF16363 GDP-mannose 4,6 dehydratase Y880_RS24400 PF04321 RmlD substrate binding domain Y880_RS24405 PF00483 Nucleotidyl transferase Y880_RS24410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Y880_RS24415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS24415 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS24415 PF02743 Cache domain Y880_RS24420 PF00158 Sigma-54 interaction domain Y880_RS24420 PF02954 Bacterial regulatory protein, Fis family Y880_RS24420 PF00072 Response regulator receiver domain Y880_RS24425 PF03480 Bacterial extracellular solute-binding protein, family 7 Y880_RS24430 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Y880_RS24435 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y880_RS24440 PF13520 Amino acid permease Y880_RS24450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y880_RS24450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y880_RS24455 PF00696 Amino acid kinase family Y880_RS24460 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS24460 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS24465 PF00459 Inositol monophosphatase family Y880_RS24470 PF00293 NUDIX domain Y880_RS24475 PF13419 Haloacid dehalogenase-like hydrolase Y880_RS24480 PF04972 BON domain Y880_RS24480 PF01476 LysM domain Y880_RS24485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS24485 PF03466 LysR substrate binding domain Y880_RS24490 PF02634 FdhD/NarQ family Y880_RS24495 PF00384 Molybdopterin oxidoreductase Y880_RS24495 PF01568 Molydopterin dinucleotide binding domain Y880_RS24510 PF02599 Global regulator protein family Y880_RS24515 PF01817 Chorismate mutase type II Y880_RS24520 PF03061 Thioesterase superfamily Y880_RS24525 PF00465 Iron-containing alcohol dehydrogenase Y880_RS24530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS24530 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS24530 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y880_RS24530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS24535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y880_RS24535 PF00378 Enoyl-CoA hydratase/isomerase Y880_RS24535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y880_RS24540 PF03466 LysR substrate binding domain Y880_RS24540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS24545 PF00881 Nitroreductase family Y880_RS24555 PF01293 Phosphoenolpyruvate carboxykinase Y880_RS24565 PF01430 Hsp33 protein Y880_RS24575 PF01479 S4 domain Y880_RS24580 PF08443 RimK-like ATP-grasp domain Y880_RS24580 PF18030 RimK PreATP-grasp domain Y880_RS24585 PF08443 RimK-like ATP-grasp domain Y880_RS24585 PF18030 RimK PreATP-grasp domain Y880_RS24590 PF02016 LD-carboxypeptidase N-terminal domain Y880_RS24590 PF17676 LD-carboxypeptidase C-terminal domain Y880_RS24595 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS24595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS24595 PF00672 HAMP domain Y880_RS24600 PF00486 Transcriptional regulatory protein, C terminal Y880_RS24600 PF00072 Response regulator receiver domain Y880_RS24605 PF09371 Tex-like protein N-terminal domain Y880_RS24605 PF17674 HHH domain Y880_RS24605 PF16921 Tex protein YqgF-like domain Y880_RS24605 PF00575 S1 RNA binding domain Y880_RS24615 PF04262 Glutamate-cysteine ligase Y880_RS24620 PF00583 Acetyltransferase (GNAT) family Y880_RS24620 PF00696 Amino acid kinase family Y880_RS24625 PF01914 MarC family integral membrane protein Y880_RS24630 PF01546 Peptidase family M20/M25/M40 Y880_RS24630 PF07687 Peptidase dimerisation domain Y880_RS24635 PF01384 Phosphate transporter family Y880_RS24640 PF01865 Protein of unknown function DUF47 Y880_RS24645 PF01928 CYTH domain Y880_RS24650 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y880_RS24650 PF00437 Type II/IV secretion system protein Y880_RS24665 PF01212 Beta-eliminating lyase Y880_RS24665 PF02347 Glycine cleavage system P-protein Y880_RS24670 PF01597 Glycine cleavage H-protein Y880_RS24675 PF01571 Aminomethyltransferase folate-binding domain Y880_RS24675 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y880_RS24680 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS24690 PF03466 LysR substrate binding domain Y880_RS24690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS24705 PF01494 FAD binding domain Y880_RS24715 PF01494 FAD binding domain Y880_RS24720 PF00557 Metallopeptidase family M24 Y880_RS24720 PF05195 Aminopeptidase P, N-terminal domain Y880_RS24725 PF03695 Uncharacterised protein family (UPF0149) Y880_RS24735 PF05164 Cell division protein ZapA Y880_RS24745 PF01812 5-formyltetrahydrofolate cyclo-ligase family Y880_RS24760 PF00005 ABC transporter Y880_RS24765 PF13533 Biotin-lipoyl like Y880_RS24775 PF08659 KR domain Y880_RS24775 PF00698 Acyl transferase domain Y880_RS24775 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS24775 PF08990 Erythronolide synthase docking Y880_RS24775 PF16197 Ketoacyl-synthetase C-terminal extension Y880_RS24775 PF00109 Beta-ketoacyl synthase, N-terminal domain Y880_RS24775 PF14765 Polyketide synthase dehydratase Y880_RS24775 PF00550 Phosphopantetheine attachment site Y880_RS24775 PF02801 Beta-ketoacyl synthase, C-terminal domain Y880_RS24780 PF07690 Major Facilitator Superfamily Y880_RS24785 PF00175 Oxidoreductase NAD-binding domain Y880_RS24790 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y880_RS24795 PF01757 Acyltransferase family Y880_RS24800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y880_RS24800 PF07498 Rho termination factor, N-terminal domain Y880_RS24800 PF07497 Rho termination factor, RNA-binding domain Y880_RS24805 PF00085 Thioredoxin Y880_RS24810 PF02541 Ppx/GppA phosphatase family Y880_RS24815 PF02503 Polyphosphate kinase middle domain Y880_RS24815 PF17941 Polyphosphate kinase C-terminal domain 1 Y880_RS24815 PF13090 Polyphosphate kinase C-terminal domain 2 Y880_RS24815 PF13089 Polyphosphate kinase N-terminal domain Y880_RS24820 PF00490 Delta-aminolevulinic acid dehydratase Y880_RS24825 PF09335 SNARE associated Golgi protein Y880_RS24835 PF03061 Thioesterase superfamily Y880_RS24840 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Y880_RS24845 PF03239 Iron permease FTR1 family Y880_RS24850 PF01810 LysE type translocator Y880_RS24855 PF03741 Integral membrane protein TerC family Y880_RS24865 PF12848 ABC transporter Y880_RS24865 PF00005 ABC transporter Y880_RS24880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y880_RS24880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y880_RS24885 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Y880_RS24890 PF02600 Disulfide bond formation protein DsbB Y880_RS24905 PF02602 Uroporphyrinogen-III synthase HemD Y880_RS24910 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Y880_RS24910 PF03900 Porphobilinogen deaminase, C-terminal domain Y880_RS24915 PF04397 LytTr DNA-binding domain Y880_RS24915 PF00072 Response regulator receiver domain Y880_RS24920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS24920 PF07694 5TMR of 5TMR-LYT Y880_RS24920 PF06580 Histidine kinase Y880_RS24925 PF14698 Argininosuccinate lyase C-terminal Y880_RS24925 PF00206 Lyase Y880_RS24940 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS24945 PF01544 CorA-like Mg2+ transporter protein Y880_RS24965 PF12633 Adenylate cyclase NT domain Y880_RS24965 PF01295 Adenylate cyclase, class-I Y880_RS24975 PF14760 Rnk N-terminus Y880_RS24975 PF01272 Transcription elongation factor, GreA/GreB, C-term Y880_RS24985 PF01491 Frataxin-like domain Y880_RS24990 PF13627 Prokaryotic lipoprotein-attachment site Y880_RS24995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y880_RS24995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y880_RS25000 PF01678 Diaminopimelate epimerase Y880_RS25010 PF02899 Phage integrase, N-terminal SAM-like domain Y880_RS25010 PF00589 Phage integrase family Y880_RS25025 PF00155 Aminotransferase class I and II Y880_RS25025 PF00392 Bacterial regulatory proteins, gntR family Y880_RS25045 PF01894 Uncharacterised protein family UPF0047 Y880_RS25050 PF00909 Ammonium Transporter Family Y880_RS25055 PF00543 Nitrogen regulatory protein P-II Y880_RS25060 PF04380 Membrane fusogenic activity Y880_RS25070 PF02028 BCCT, betaine/carnitine/choline family transporter Y880_RS25080 PF03466 LysR substrate binding domain Y880_RS25080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS25090 PF00563 EAL domain Y880_RS25090 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS25090 PF03707 Bacterial signalling protein N terminal repeat Y880_RS25095 PF00580 UvrD/REP helicase N-terminal domain Y880_RS25095 PF13361 UvrD-like helicase C-terminal domain Y880_RS25100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y880_RS25100 PF00205 Thiamine pyrophosphate enzyme, central domain Y880_RS25100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y880_RS25105 PF00156 Phosphoribosyl transferase domain Y880_RS25110 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Y880_RS25110 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y880_RS25115 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS25120 PF07883 Cupin domain Y880_RS25120 PF01381 Helix-turn-helix Y880_RS25125 PF00842 Alanine racemase, C-terminal domain Y880_RS25125 PF01168 Alanine racemase, N-terminal domain Y880_RS25130 PF01042 Endoribonuclease L-PSP Y880_RS25135 PF01266 FAD dependent oxidoreductase Y880_RS25145 PF13617 YnbE-like lipoprotein Y880_RS25155 PF01037 Lrp/AsnC ligand binding domain Y880_RS25160 PF01266 FAD dependent oxidoreductase Y880_RS25165 PF13091 PLD-like domain Y880_RS25170 PF07690 Major Facilitator Superfamily Y880_RS25175 PF00171 Aldehyde dehydrogenase family Y880_RS25180 PF00202 Aminotransferase class-III Y880_RS25190 PF00471 Ribosomal protein L33 Y880_RS25195 PF00830 Ribosomal L28 family Y880_RS25200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y880_RS25210 PF04002 RadC-like JAB domain Y880_RS25215 PF04127 DNA / pantothenate metabolism flavoprotein Y880_RS25215 PF02441 Flavoprotein Y880_RS25220 PF00692 dUTPase Y880_RS25230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y880_RS25230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y880_RS25230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y880_RS25230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y880_RS25235 PF00696 Amino acid kinase family Y880_RS25240 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y880_RS25240 PF12833 Helix-turn-helix domain Y880_RS25255 PF01565 FAD binding domain Y880_RS25255 PF04030 D-arabinono-1,4-lactone oxidase Y880_RS25260 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS25275 PF00156 Phosphoribosyl transferase domain Y880_RS25280 PF03372 Endonuclease/Exonuclease/phosphatase family Y880_RS25290 PF01138 3' exoribonuclease family, domain 1 Y880_RS25290 PF03725 3' exoribonuclease family, domain 2 Y880_RS25295 PF03755 YicC-like family, N-terminal region Y880_RS25295 PF08340 Domain of unknown function (DUF1732) Y880_RS25300 PF00625 Guanylate kinase Y880_RS25305 PF01192 RNA polymerase Rpb6 Y880_RS25310 PF04607 Region found in RelA / SpoT proteins Y880_RS25310 PF13291 ACT domain Y880_RS25310 PF02824 TGS domain Y880_RS25315 PF01042 Endoribonuclease L-PSP Y880_RS25340 PF03466 LysR substrate binding domain Y880_RS25340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS25345 PF17191 RecG wedge domain Y880_RS25345 PF00271 Helicase conserved C-terminal domain Y880_RS25345 PF00270 DEAD/DEAH box helicase Y880_RS25360 PF00216 Bacterial DNA-binding protein Y880_RS25370 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS25370 PF18113 Rubredoxin binding C-terminal domain Y880_RS25375 PF00301 Rubredoxin Y880_RS25380 PF00301 Rubredoxin Y880_RS25385 PF03928 Haem-degrading Y880_RS25400 PF02913 FAD linked oxidases, C-terminal domain Y880_RS25400 PF01565 FAD binding domain Y880_RS25405 PF00392 Bacterial regulatory proteins, gntR family Y880_RS25405 PF07729 FCD domain Y880_RS25410 PF04345 Chorismate lyase Y880_RS25415 PF01040 UbiA prenyltransferase family Y880_RS25425 PF00072 Response regulator receiver domain Y880_RS25425 PF00486 Transcriptional regulatory protein, C terminal Y880_RS25430 PF11808 Phosphate regulon sensor protein PhoR Y880_RS25430 PF00989 PAS fold Y880_RS25430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS25430 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS25435 PF01595 Cyclin M transmembrane N-terminal domain Y880_RS25435 PF00571 CBS domain Y880_RS25435 PF03471 Transporter associated domain Y880_RS25440 PF01476 LysM domain Y880_RS25440 PF08525 Opacity-associated protein A N-terminal motif Y880_RS25440 PF01551 Peptidase family M23 Y880_RS25445 PF00072 Response regulator receiver domain Y880_RS25450 PF01895 PhoU domain Y880_RS25455 PF00005 ABC transporter Y880_RS25460 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS25465 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS25470 PF12849 PBP superfamily domain Y880_RS25495 PF07690 Major Facilitator Superfamily Y880_RS25500 PF03061 Thioesterase superfamily Y880_RS25505 PF05199 GMC oxidoreductase Y880_RS25505 PF00732 GMC oxidoreductase Y880_RS25510 PF00171 Aldehyde dehydrogenase family Y880_RS25515 PF13977 BetI-type transcriptional repressor, C-terminal Y880_RS25515 PF00440 Bacterial regulatory proteins, tetR family Y880_RS25525 PF02028 BCCT, betaine/carnitine/choline family transporter Y880_RS25530 PF00571 CBS domain Y880_RS25530 PF00005 ABC transporter Y880_RS25535 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS25540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y880_RS25545 PF03315 Serine dehydratase beta chain Y880_RS25545 PF03313 Serine dehydratase alpha chain Y880_RS25550 PF01965 DJ-1/PfpI family Y880_RS25550 PF12833 Helix-turn-helix domain Y880_RS25565 PF03601 Conserved hypothetical protein 698 Y880_RS25585 PF05853 beta-keto acid cleavage enzyme Y880_RS25590 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y880_RS25595 PF12833 Helix-turn-helix domain Y880_RS25595 PF01965 DJ-1/PfpI family Y880_RS25600 PF07687 Peptidase dimerisation domain Y880_RS25600 PF01546 Peptidase family M20/M25/M40 Y880_RS25610 PF01042 Endoribonuclease L-PSP Y880_RS25620 PF13091 PLD-like domain Y880_RS25630 PF01244 Membrane dipeptidase (Peptidase family M19) Y880_RS25640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y880_RS25645 PF13183 4Fe-4S dicluster domain Y880_RS25645 PF02754 Cysteine-rich domain Y880_RS25665 PF13443 Cro/C1-type HTH DNA-binding domain Y880_RS25700 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y880_RS25700 PF00355 Rieske [2Fe-2S] domain Y880_RS25705 PF00970 Oxidoreductase FAD-binding domain Y880_RS25705 PF00175 Oxidoreductase NAD-binding domain Y880_RS25705 PF00042 Globin Y880_RS25715 PF01212 Beta-eliminating lyase Y880_RS25725 PF00464 Serine hydroxymethyltransferase Y880_RS25730 PF01266 FAD dependent oxidoreductase Y880_RS25750 PF00551 Formyl transferase Y880_RS25755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Y880_RS25755 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS25760 PF01263 Aldose 1-epimerase Y880_RS25775 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Y880_RS25775 PF02222 ATP-grasp domain Y880_RS25780 PF00731 AIR carboxylase Y880_RS25790 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS25790 PF00107 Zinc-binding dehydrogenase Y880_RS25795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS25795 PF03466 LysR substrate binding domain Y880_RS25800 PF10415 Fumarase C C-terminus Y880_RS25800 PF00206 Lyase Y880_RS25810 PF04143 Sulphur transport Y880_RS25830 PF03222 Tryptophan/tyrosine permease family Y880_RS25835 PF02436 Conserved carboxylase domain Y880_RS25835 PF00682 HMGL-like Y880_RS25835 PF00364 Biotin-requiring enzyme Y880_RS25840 PF02785 Biotin carboxylase C-terminal domain Y880_RS25840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y880_RS25840 PF00289 Biotin carboxylase, N-terminal domain Y880_RS25845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS25845 PF03466 LysR substrate binding domain Y880_RS25855 PF01418 Helix-turn-helix domain, rpiR family Y880_RS25855 PF01380 SIS domain Y880_RS25860 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y880_RS25860 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y880_RS25865 PF01136 Peptidase family U32 Y880_RS25865 PF16325 Peptidase family U32 C-terminal domain Y880_RS25885 PF03707 Bacterial signalling protein N terminal repeat Y880_RS25885 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS25885 PF00563 EAL domain Y880_RS25890 PF00580 UvrD/REP helicase N-terminal domain Y880_RS25890 PF13361 UvrD-like helicase C-terminal domain Y880_RS25895 PF00892 EamA-like transporter family Y880_RS25900 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y880_RS25900 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Y880_RS25910 PF00534 Glycosyl transferases group 1 Y880_RS25910 PF13439 Glycosyltransferase Family 4 Y880_RS25915 PF00534 Glycosyl transferases group 1 Y880_RS25915 PF13579 Glycosyl transferase 4-like domain Y880_RS25925 PF00005 ABC transporter Y880_RS25935 PF01050 Mannose-6-phosphate isomerase Y880_RS25935 PF00483 Nucleotidyl transferase Y880_RS25940 PF16363 GDP-mannose 4,6 dehydratase Y880_RS25945 PF16363 GDP-mannose 4,6 dehydratase Y880_RS25965 PF01757 Acyltransferase family Y880_RS26005 PF03547 Membrane transport protein Y880_RS26015 PF03600 Citrate transporter Y880_RS26020 PF03741 Integral membrane protein TerC family Y880_RS26025 PF00472 RF-1 domain Y880_RS26045 PF02690 Na+/Pi-cotransporter Y880_RS26065 PF07690 Major Facilitator Superfamily Y880_RS26075 PF07670 Nucleoside recognition Y880_RS26080 PF00375 Sodium:dicarboxylate symporter family Y880_RS26100 PF00158 Sigma-54 interaction domain Y880_RS26100 PF02954 Bacterial regulatory protein, Fis family Y880_RS26100 PF00072 Response regulator receiver domain Y880_RS26105 PF08448 PAS fold Y880_RS26105 PF00672 HAMP domain Y880_RS26105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS26105 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB Y880_RS26105 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS26110 PF01510 N-acetylmuramoyl-L-alanine amidase Y880_RS26115 PF01914 MarC family integral membrane protein Y880_RS26120 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS26130 PF01323 DSBA-like thioredoxin domain Y880_RS26135 PF00034 Cytochrome c Y880_RS26140 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS26145 PF01926 50S ribosome-binding GTPase Y880_RS26150 PF01367 5'-3' exonuclease, C-terminal SAM fold Y880_RS26150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Y880_RS26150 PF00476 DNA polymerase family A Y880_RS26150 PF01612 3'-5' exonuclease Y880_RS26160 PF01636 Phosphotransferase enzyme family Y880_RS26175 PF01297 Zinc-uptake complex component A periplasmic Y880_RS26180 PF01475 Ferric uptake regulator family Y880_RS26185 PF00005 ABC transporter Y880_RS26190 PF00950 ABC 3 transport family Y880_RS26200 PF09383 NIL domain Y880_RS26200 PF00005 ABC transporter Y880_RS26205 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS26210 PF03180 NLPA lipoprotein Y880_RS26235 PF00324 Amino acid permease Y880_RS26240 PF02954 Bacterial regulatory protein, Fis family Y880_RS26240 PF00072 Response regulator receiver domain Y880_RS26240 PF00158 Sigma-54 interaction domain Y880_RS26245 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS26245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS26245 PF02743 Cache domain Y880_RS26255 PF00905 Penicillin binding protein transpeptidase domain Y880_RS26265 PF08543 Phosphomethylpyrimidine kinase Y880_RS26280 PF00999 Sodium/hydrogen exchanger family Y880_RS26280 PF02254 TrkA-N domain Y880_RS26285 PF03061 Thioesterase superfamily Y880_RS26300 PF00120 Glutamine synthetase, catalytic domain Y880_RS26305 PF00202 Aminotransferase class-III Y880_RS26335 PF00999 Sodium/hydrogen exchanger family Y880_RS26335 PF02254 TrkA-N domain Y880_RS26340 PF00083 Sugar (and other) transporter Y880_RS26345 PF03544 Gram-negative bacterial TonB protein C-terminal Y880_RS26350 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y880_RS26350 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y880_RS26365 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y880_RS26365 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y880_RS26370 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y880_RS26380 PF01520 N-acetylmuramoyl-L-alanine amidase Y880_RS26385 PF02649 Type I GTP cyclohydrolase folE2 Y880_RS26395 PF01979 Amidohydrolase family Y880_RS26415 PF16868 NMT1-like family Y880_RS26470 PF01380 SIS domain Y880_RS26475 PF08220 DeoR-like helix-turn-helix domain Y880_RS26475 PF00455 DeoR C terminal sensor domain Y880_RS26485 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS26485 PF12804 MobA-like NTP transferase domain Y880_RS26490 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Y880_RS26490 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Y880_RS26495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y880_RS26495 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y880_RS26500 PF00231 ATP synthase Y880_RS26505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y880_RS26505 PF00306 ATP synthase alpha/beta chain, C terminal domain Y880_RS26505 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y880_RS26510 PF00213 ATP synthase delta (OSCP) subunit Y880_RS26515 PF00430 ATP synthase B/B' CF(0) Y880_RS26520 PF00137 ATP synthase subunit C Y880_RS26525 PF00119 ATP synthase A chain Y880_RS26530 PF03899 ATP synthase I chain Y880_RS26535 PF02195 ParB-like nuclease domain Y880_RS26535 PF17762 HTH domain found in ParB protein Y880_RS26540 PF13614 AAA domain Y880_RS26545 PF02527 rRNA small subunit methyltransferase G Y880_RS26550 PF01134 Glucose inhibited division protein A Y880_RS26550 PF13932 GidA associated domain Y880_RS26570 PF10396 GTP-binding protein TrmE N-terminus Y880_RS26570 PF12631 MnmE helical domain Y880_RS26570 PF01926 50S ribosome-binding GTPase Y880_RS26575 PF02096 60Kd inner membrane protein Y880_RS26575 PF14849 YidC periplasmic domain Y880_RS26580 PF00825 Ribonuclease P Y880_RS26585 PF00468 Ribosomal protein L34 Y880_RS26590 PF08299 Bacterial dnaA protein helix-turn-helix Y880_RS26590 PF11638 DnaA N-terminal domain Y880_RS26590 PF00308 Bacterial dnaA protein Y880_RS26595 PF02768 DNA polymerase III beta subunit, C-terminal domain Y880_RS26595 PF02767 DNA polymerase III beta subunit, central domain Y880_RS26595 PF00712 DNA polymerase III beta subunit, N-terminal domain Y880_RS26600 PF02463 RecF/RecN/SMC N terminal domain Y880_RS26605 PF00986 DNA gyrase B subunit, carboxyl terminus Y880_RS26605 PF18053 DNA gyrase B subunit insert domain Y880_RS26605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS26605 PF00204 DNA gyrase B Y880_RS26605 PF01751 Toprim domain Y880_RS26625 PF05746 DALR anticodon binding domain Y880_RS26625 PF02092 Glycyl-tRNA synthetase beta subunit Y880_RS26630 PF02091 Glycyl-tRNA synthetase alpha subunit Y880_RS26635 PF03352 Methyladenine glycosylase Y880_RS26650 PF02592 Putative vitamin uptake transporter Y880_RS26665 PF02080 TrkA-C domain Y880_RS26665 PF02254 TrkA-N domain Y880_RS26670 PF01029 NusB family Y880_RS26670 PF01189 16S rRNA methyltransferase RsmB/F Y880_RS26675 PF02911 Formyl transferase, C-terminal domain Y880_RS26675 PF00551 Formyl transferase Y880_RS26680 PF01327 Polypeptide deformylase Y880_RS26685 PF01476 LysM domain Y880_RS26695 PF01300 Telomere recombination Y880_RS26700 PF08240 Alcohol dehydrogenase GroES-like domain Y880_RS26700 PF00107 Zinc-binding dehydrogenase Y880_RS26705 PF01218 Coproporphyrinogen III oxidase Y880_RS26710 PF08501 Shikimate dehydrogenase substrate binding domain Y880_RS26710 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Y880_RS26710 PF01488 Shikimate / quinate 5-dehydrogenase Y880_RS26735 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y880_RS26740 PF00884 Sulfatase Y880_RS26740 PF12411 Choline sulfatase enzyme C terminal Y880_RS26745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS26745 PF03466 LysR substrate binding domain Y880_RS26760 PF00072 Response regulator receiver domain Y880_RS26760 PF00196 Bacterial regulatory proteins, luxR family Y880_RS26765 PF00290 Tryptophan synthase alpha chain Y880_RS26770 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS26775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS26775 PF03466 LysR substrate binding domain Y880_RS26780 PF07311 Dodecin Y880_RS26790 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y880_RS26790 PF17287 POTRA domain Y880_RS26790 PF08479 POTRA domain, ShlB-type Y880_RS26825 PF13194 Domain of unknown function (DUF4010) Y880_RS26830 PF03496 ADP-ribosyltransferase exoenzyme Y880_RS26830 PF03545 Yersinia virulence determinant (YopE) Y880_RS26835 PF03783 Curli production assembly/transport component CsgG Y880_RS26845 PF05643 Putative bacterial lipoprotein (DUF799) Y880_RS26870 PF00733 Asparagine synthase Y880_RS26870 PF13537 Glutamine amidotransferase domain Y880_RS26880 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Y880_RS26890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS26890 PF03466 LysR substrate binding domain Y880_RS26905 PF02566 OsmC-like protein Y880_RS26910 PF06649 Protein of unknown function (DUF1161) Y880_RS26935 PF13419 Haloacid dehalogenase-like hydrolase Y880_RS26940 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS26945 PF01432 Peptidase family M3 Y880_RS26950 PF09526 Probable metal-binding protein (DUF2387) Y880_RS26955 PF04055 Radical SAM superfamily Y880_RS26965 PF03781 Sulfatase-modifying factor enzyme 1 Y880_RS26975 PF12704 MacB-like periplasmic core domain Y880_RS26975 PF02687 FtsX-like permease family Y880_RS26975 PF00005 ABC transporter Y880_RS26995 PF06761 Intracellular multiplication and human macrophage-killing Y880_RS26995 PF14331 ImcF-related N-terminal domain Y880_RS26995 PF06744 Type VI secretion protein IcmF C-terminal Y880_RS27005 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE Y880_RS27025 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS27030 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS27035 PF05638 Type VI secretion system effector, Hcp Y880_RS27040 PF07024 ImpE protein Y880_RS27045 PF04965 Gene 25-like lysozyme Y880_RS27050 PF05947 Type VI secretion system, TssF Y880_RS27060 PF17871 AAA lid domain Y880_RS27060 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS27060 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS27060 PF07724 AAA domain (Cdc48 subfamily) Y880_RS27065 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS27070 PF18660 Tsi6 Y880_RS27075 PF05488 PAAR motif Y880_RS27075 PF15538 Bacterial toxin 46 Y880_RS27080 PF08786 DcrB Y880_RS27085 PF04717 Type VI secretion system, phage-baseplate injector Y880_RS27085 PF06715 Gp5 C-terminal repeat (3 copies) Y880_RS27105 PF13665 Domain of unknown function (DUF4150) Y880_RS27105 PF15635 GHH signature containing HNH/Endo VII superfamily nuclease toxin 2 Y880_RS27120 PF00484 Carbonic anhydrase Y880_RS27125 PF00916 Sulfate permease family Y880_RS27125 PF01740 STAS domain Y880_RS27140 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Y880_RS27140 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y880_RS27145 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS27150 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Y880_RS27155 PF00510 Cytochrome c oxidase subunit III Y880_RS27180 PF01040 UbiA prenyltransferase family Y880_RS27185 PF02630 SCO1/SenC Y880_RS27190 PF13673 Acetyltransferase (GNAT) domain Y880_RS27195 PF01638 HxlR-like helix-turn-helix Y880_RS27205 PF01323 DSBA-like thioredoxin domain Y880_RS27210 PF00375 Sodium:dicarboxylate symporter family Y880_RS27215 PF00392 Bacterial regulatory proteins, gntR family Y880_RS27215 PF07729 FCD domain Y880_RS27230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27230 PF03466 LysR substrate binding domain Y880_RS27255 PF08274 PhnA Zinc-Ribbon Y880_RS27255 PF03831 PhnA domain Y880_RS27260 PF00324 Amino acid permease Y880_RS27265 PF00171 Aldehyde dehydrogenase family Y880_RS27270 PF07883 Cupin domain Y880_RS27275 PF00202 Aminotransferase class-III Y880_RS27280 PF03466 LysR substrate binding domain Y880_RS27280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27285 PF01979 Amidohydrolase family Y880_RS27300 PF02653 Branched-chain amino acid transport system / permease component Y880_RS27305 PF02653 Branched-chain amino acid transport system / permease component Y880_RS27315 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y880_RS27315 PF00578 AhpC/TSA family Y880_RS27325 PF03976 Polyphosphate kinase 2 (PPK2) Y880_RS27330 PF01979 Amidohydrolase family Y880_RS27335 PF01156 Inosine-uridine preferring nucleoside hydrolase Y880_RS27350 PF02608 ABC transporter substrate-binding protein PnrA-like Y880_RS27355 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Y880_RS27355 PF03171 2OG-Fe(II) oxygenase superfamily Y880_RS27360 PF00962 Adenosine/AMP deaminase Y880_RS27375 PF00593 TonB dependent receptor Y880_RS27375 PF07715 TonB-dependent Receptor Plug Domain Y880_RS27380 PF03466 LysR substrate binding domain Y880_RS27380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27385 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Y880_RS27385 PF00775 Dioxygenase Y880_RS27390 PF00775 Dioxygenase Y880_RS27400 PF01614 Bacterial transcriptional regulator Y880_RS27400 PF09339 IclR helix-turn-helix domain Y880_RS27405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS27415 PF00873 AcrB/AcrD/AcrF family Y880_RS27420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27420 PF03466 LysR substrate binding domain Y880_RS27435 PF03573 outer membrane porin, OprD family Y880_RS27455 PF00860 Permease family Y880_RS27460 PF00440 Bacterial regulatory proteins, tetR family Y880_RS27460 PF08362 YcdC-like protein, C-terminal region Y880_RS27465 PF01205 Uncharacterized protein family UPF0029 Y880_RS27470 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS27475 PF09345 Domain of unknown function (DUF1987) Y880_RS27495 PF03975 CheD chemotactic sensory transduction Y880_RS27500 PF03705 CheR methyltransferase, all-alpha domain Y880_RS27500 PF01739 CheR methyltransferase, SAM binding domain Y880_RS27510 PF01584 CheW-like domain Y880_RS27520 PF00072 Response regulator receiver domain Y880_RS27525 PF12729 Four helix bundle sensory module for signal transduction Y880_RS27525 PF00672 HAMP domain Y880_RS27525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS27530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27530 PF03466 LysR substrate binding domain Y880_RS27540 PF00884 Sulfatase Y880_RS27545 PF00005 ABC transporter Y880_RS27550 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS27555 PF09084 NMT1/THI5 like Y880_RS27560 PF03573 outer membrane porin, OprD family Y880_RS27570 PF03466 LysR substrate binding domain Y880_RS27570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27580 PF07715 TonB-dependent Receptor Plug Domain Y880_RS27580 PF00593 TonB dependent receptor Y880_RS27585 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y880_RS27590 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y880_RS27595 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Y880_RS27595 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Y880_RS27600 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Y880_RS27605 PF02233 NAD(P) transhydrogenase beta subunit Y880_RS27615 PF01618 MotA/TolQ/ExbB proton channel family Y880_RS27620 PF02472 Biopolymer transport protein ExbD/TolR Y880_RS27640 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Y880_RS27645 PF06857 Malonate decarboxylase delta subunit (MdcD) Y880_RS27650 PF01039 Carboxyl transferase domain Y880_RS27660 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG Y880_RS27680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27680 PF03466 LysR substrate binding domain Y880_RS27700 PF00324 Amino acid permease Y880_RS27705 PF00202 Aminotransferase class-III Y880_RS27715 PF00701 Dihydrodipicolinate synthetase family Y880_RS27720 PF00596 Class II Aldolase and Adducin N-terminal domain Y880_RS27725 PF01381 Helix-turn-helix Y880_RS27725 PF08671 Anti-repressor SinI Y880_RS27730 PF01144 Coenzyme A transferase Y880_RS27735 PF01144 Coenzyme A transferase Y880_RS27740 PF02803 Thiolase, C-terminal domain Y880_RS27740 PF00108 Thiolase, N-terminal domain Y880_RS27745 PF00083 Sugar (and other) transporter Y880_RS27755 PF12146 Serine aminopeptidase, S33 Y880_RS27760 PF02627 Carboxymuconolactone decarboxylase family Y880_RS27765 PF03466 LysR substrate binding domain Y880_RS27765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS27775 PF07690 Major Facilitator Superfamily Y880_RS27785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y880_RS27785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y880_RS27800 PF03573 outer membrane porin, OprD family Y880_RS27805 PF07690 Major Facilitator Superfamily Y880_RS27810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y880_RS27810 PF01261 Xylose isomerase-like TIM barrel Y880_RS27815 PF00440 Bacterial regulatory proteins, tetR family Y880_RS27815 PF17938 Tetracyclin repressor-like, C-terminal domain Y880_RS27825 PF01220 Dehydroquinase class II Y880_RS27830 PF07690 Major Facilitator Superfamily Y880_RS27835 PF01494 FAD binding domain Y880_RS27850 PF03448 MgtE intracellular N domain Y880_RS27850 PF01769 Divalent cation transporter Y880_RS27850 PF00571 CBS domain Y880_RS27865 PF01047 MarR family Y880_RS27870 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y880_RS27880 PF06912 Protein of unknown function (DUF1275) Y880_RS27890 PF02086 D12 class N6 adenine-specific DNA methyltransferase Y880_RS27935 PF00171 Aldehyde dehydrogenase family Y880_RS27945 PF00202 Aminotransferase class-III Y880_RS27955 PF00072 Response regulator receiver domain Y880_RS27960 PF00392 Bacterial regulatory proteins, gntR family Y880_RS27960 PF00155 Aminotransferase class I and II Y880_RS27970 PF02627 Carboxymuconolactone decarboxylase family Y880_RS27985 PF03466 LysR substrate binding domain Y880_RS27985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS28010 PF01435 Peptidase family M48 Y880_RS28025 PF00005 ABC transporter Y880_RS28025 PF12857 TOBE-like domain Y880_RS28030 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS28035 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS28050 PF00563 EAL domain Y880_RS28050 PF03707 Bacterial signalling protein N terminal repeat Y880_RS28050 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS28060 PF00474 Sodium:solute symporter family Y880_RS28065 PF00491 Arginase family Y880_RS28070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS28070 PF03466 LysR substrate binding domain Y880_RS28075 PF08448 PAS fold Y880_RS28075 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS28080 PF03573 outer membrane porin, OprD family Y880_RS28085 PF04371 Porphyromonas-type peptidyl-arginine deiminase Y880_RS28100 PF13416 Bacterial extracellular solute-binding protein Y880_RS28110 PF07722 Peptidase C26 Y880_RS28115 PF00120 Glutamine synthetase, catalytic domain Y880_RS28120 PF00202 Aminotransferase class-III Y880_RS28125 PF13416 Bacterial extracellular solute-binding protein Y880_RS28130 PF13416 Bacterial extracellular solute-binding protein Y880_RS28135 PF00005 ABC transporter Y880_RS28135 PF08402 TOBE domain Y880_RS28140 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS28145 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS28150 PF01804 Penicillin amidase Y880_RS28200 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS28205 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y880_RS28215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y880_RS28215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y880_RS28220 PF02913 FAD linked oxidases, C-terminal domain Y880_RS28220 PF01565 FAD binding domain Y880_RS28225 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y880_RS28235 PF04076 Bacterial OB fold (BOF) protein Y880_RS28240 PF00850 Histone deacetylase domain Y880_RS28245 PF00324 Amino acid permease Y880_RS28250 PF01547 Bacterial extracellular solute-binding protein Y880_RS28255 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS28260 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS28265 PF08402 TOBE domain Y880_RS28265 PF00005 ABC transporter Y880_RS28275 PF06977 SdiA-regulated Y880_RS28280 PF04389 Peptidase family M28 Y880_RS28285 PF00132 Bacterial transferase hexapeptide (six repeats) Y880_RS28290 PF07411 Domain of unknown function (DUF1508) Y880_RS28295 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Y880_RS28300 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS28300 PF00585 C-terminal regulatory domain of Threonine dehydratase Y880_RS28330 PF00293 NUDIX domain Y880_RS28335 PF00391 PEP-utilising enzyme, mobile domain Y880_RS28335 PF02896 PEP-utilising enzyme, TIM barrel domain Y880_RS28335 PF01590 GAF domain Y880_RS28335 PF05524 PEP-utilising enzyme, N-terminal Y880_RS28340 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS28350 PF01925 Sulfite exporter TauE/SafE Y880_RS28355 PF01790 Prolipoprotein diacylglyceryl transferase Y880_RS28360 PF00303 Thymidylate synthase Y880_RS28385 PF03009 Glycerophosphoryl diester phosphodiesterase family Y880_RS28400 PF00186 Dihydrofolate reductase Y880_RS28405 PF12850 Calcineurin-like phosphoesterase superfamily domain Y880_RS28410 PF00860 Permease family Y880_RS28415 PF00920 Dehydratase family Y880_RS28420 PF17785 PUA-like domain Y880_RS28420 PF10672 S-adenosylmethionine-dependent methyltransferase Y880_RS28425 PF01965 DJ-1/PfpI family Y880_RS28435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Y880_RS28435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Y880_RS28435 PF06827 Zinc finger found in FPG and IleRS Y880_RS28460 PF00037 4Fe-4S binding domain Y880_RS28465 PF01467 Cytidylyltransferase-like Y880_RS28470 PF00732 GMC oxidoreductase Y880_RS28470 PF05199 GMC oxidoreductase Y880_RS28480 PF00171 Aldehyde dehydrogenase family Y880_RS28485 PF00440 Bacterial regulatory proteins, tetR family Y880_RS28495 PF00561 alpha/beta hydrolase fold Y880_RS28510 PF05193 Peptidase M16 inactive domain Y880_RS28515 PF00675 Insulinase (Peptidase family M16) Y880_RS28515 PF05193 Peptidase M16 inactive domain Y880_RS28520 PF02881 SRP54-type protein, helical bundle domain Y880_RS28520 PF00448 SRP54-type protein, GTPase domain Y880_RS28525 PF00005 ABC transporter Y880_RS28530 PF18075 FtsX extracellular domain Y880_RS28535 PF04545 Sigma-70, region 4 Y880_RS28535 PF00140 Sigma-70 factor, region 1.2 Y880_RS28535 PF04542 Sigma-70 region 2 Y880_RS28545 PF00912 Transglycosylase Y880_RS28550 PF04241 Protein of unknown function (DUF423) Y880_RS28555 PF05690 Thiazole biosynthesis protein ThiG Y880_RS28555 PF02597 ThiS family Y880_RS28560 PF05690 Thiazole biosynthesis protein ThiG Y880_RS28565 PF02390 Putative methyltransferase Y880_RS28570 PF07044 Protein of unknown function (DUF1329) Y880_RS28590 PF01725 Ham1 family Y880_RS28600 PF00561 alpha/beta hydrolase fold Y880_RS28600 PF07021 Methionine biosynthesis protein MetW Y880_RS28605 PF00561 alpha/beta hydrolase fold Y880_RS28610 PF01926 50S ribosome-binding GTPase Y880_RS28610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Y880_RS28615 PF02594 Uncharacterised ACR, YggU family COG1872 Y880_RS28620 PF02325 YGGT family Y880_RS28625 PF14748 Pyrroline-5-carboxylate reductase dimerisation Y880_RS28625 PF03807 NADP oxidoreductase coenzyme F420-dependent Y880_RS28630 PF01168 Alanine racemase, N-terminal domain Y880_RS28635 PF00437 Type II/IV secretion system protein Y880_RS28640 PF00437 Type II/IV secretion system protein Y880_RS28645 PF01545 Cation efflux family Y880_RS28655 PF00291 Pyridoxal-phosphate dependent enzyme Y880_RS28655 PF00571 CBS domain Y880_RS28660 PF01053 Cys/Met metabolism PLP-dependent enzyme Y880_RS28665 PF01979 Amidohydrolase family Y880_RS28670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y880_RS28670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y880_RS28675 PF00156 Phosphoribosyl transferase domain Y880_RS28680 PF03652 Holliday junction resolvase Y880_RS28685 PF02622 Uncharacterized ACR, COG1678 Y880_RS28700 PF00072 Response regulator receiver domain Y880_RS28705 PF00072 Response regulator receiver domain Y880_RS28710 PF01584 CheW-like domain Y880_RS28715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y880_RS28715 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y880_RS28720 PF03705 CheR methyltransferase, all-alpha domain Y880_RS28720 PF01739 CheR methyltransferase, SAM binding domain Y880_RS28730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS28730 PF00072 Response regulator receiver domain Y880_RS28730 PF01584 CheW-like domain Y880_RS28730 PF02895 Signal transducing histidine kinase, homodimeric domain Y880_RS28730 PF01627 Hpt domain Y880_RS28735 PF01339 CheB methylesterase Y880_RS28750 PF01810 LysE type translocator Y880_RS28760 PF04452 RNA methyltransferase Y880_RS28765 PF00202 Aminotransferase class-III Y880_RS28775 PF01593 Flavin containing amine oxidoreductase Y880_RS28780 PF01292 Prokaryotic cytochrome b561 Y880_RS28785 PF04264 YceI-like domain Y880_RS28790 PF01047 MarR family Y880_RS28795 PF00529 HlyD membrane-fusion protein of T1SS Y880_RS28795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y880_RS28800 PF00873 AcrB/AcrD/AcrF family Y880_RS28805 PF02321 Outer membrane efflux protein Y880_RS28805 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y880_RS28810 PF00271 Helicase conserved C-terminal domain Y880_RS28810 PF00270 DEAD/DEAH box helicase Y880_RS28820 PF02219 Methylenetetrahydrofolate reductase Y880_RS28825 PF13291 ACT domain Y880_RS28825 PF04607 Region found in RelA / SpoT proteins Y880_RS28825 PF02824 TGS domain Y880_RS28830 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Y880_RS28830 PF05221 S-adenosyl-L-homocysteine hydrolase Y880_RS28840 PF00593 TonB dependent receptor Y880_RS28840 PF07715 TonB-dependent Receptor Plug Domain Y880_RS28840 PF07660 Secretin and TonB N terminus short domain Y880_RS28850 PF00440 Bacterial regulatory proteins, tetR family Y880_RS28850 PF08362 YcdC-like protein, C-terminal region Y880_RS28855 PF07969 Amidohydrolase family Y880_RS28870 PF01180 Dihydroorotate dehydrogenase Y880_RS28875 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y880_RS28875 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y880_RS28880 PF01979 Amidohydrolase family Y880_RS28895 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y880_RS28900 PF01546 Peptidase family M20/M25/M40 Y880_RS28900 PF07687 Peptidase dimerisation domain Y880_RS28905 PF02515 CoA-transferase family III Y880_RS28910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS28910 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS28910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS28915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS28915 PF03466 LysR substrate binding domain Y880_RS28925 PF01384 Phosphate transporter family Y880_RS28935 PF01145 SPFH domain / Band 7 family Y880_RS28935 PF16200 C-terminal region of band_7 Y880_RS28945 PF12805 FUSC-like inner membrane protein yccS Y880_RS28950 PF03880 DbpA RNA binding domain Y880_RS28950 PF00271 Helicase conserved C-terminal domain Y880_RS28950 PF00270 DEAD/DEAH box helicase Y880_RS28955 PF00313 'Cold-shock' DNA-binding domain Y880_RS28960 PF18030 RimK PreATP-grasp domain Y880_RS28960 PF08443 RimK-like ATP-grasp domain Y880_RS28970 PF07690 Major Facilitator Superfamily Y880_RS28975 PF10431 C-terminal, D2-small domain, of ClpB protein Y880_RS28975 PF07724 AAA domain (Cdc48 subfamily) Y880_RS28975 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS28975 PF17871 AAA lid domain Y880_RS28975 PF02861 Clp amino terminal domain, pathogenicity island component Y880_RS28985 PF01553 Acyltransferase Y880_RS28995 PF00486 Transcriptional regulatory protein, C terminal Y880_RS28995 PF00072 Response regulator receiver domain Y880_RS29000 PF00512 His Kinase A (phospho-acceptor) domain Y880_RS29000 PF00672 HAMP domain Y880_RS29000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS29005 PF06123 Inner membrane protein CreD Y880_RS29040 PF07715 TonB-dependent Receptor Plug Domain Y880_RS29040 PF00593 TonB dependent receptor Y880_RS29045 PF04773 FecR protein Y880_RS29045 PF16220 Domain of unknown function (DUF4880) Y880_RS29050 PF08281 Sigma-70, region 4 Y880_RS29050 PF04542 Sigma-70 region 2 Y880_RS29055 PF13417 Glutathione S-transferase, N-terminal domain Y880_RS29055 PF00043 Glutathione S-transferase, C-terminal domain Y880_RS29060 PF03061 Thioesterase superfamily Y880_RS29065 PF00440 Bacterial regulatory proteins, tetR family Y880_RS29070 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y880_RS29075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS29075 PF03466 LysR substrate binding domain Y880_RS29090 PF12146 Serine aminopeptidase, S33 Y880_RS29100 PF01274 Malate synthase Y880_RS29115 PF00892 EamA-like transporter family Y880_RS29120 PF01636 Phosphotransferase enzyme family Y880_RS29125 PF03459 TOBE domain Y880_RS29125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS29130 PF10043 Predicted periplasmic lipoprotein (DUF2279) Y880_RS29145 PF03466 LysR substrate binding domain Y880_RS29145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS29150 PF03746 LamB/YcsF family Y880_RS29155 PF00364 Biotin-requiring enzyme Y880_RS29160 PF00289 Biotin carboxylase, N-terminal domain Y880_RS29160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y880_RS29160 PF02785 Biotin carboxylase C-terminal domain Y880_RS29170 PF02626 Carboxyltransferase domain, subdomain A and B Y880_RS29180 PF02753 Pili assembly chaperone PapD, C-terminal domain Y880_RS29180 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y880_RS29185 PF04055 Radical SAM superfamily Y880_RS29185 PF06968 Biotin and Thiamin Synthesis associated domain Y880_RS29190 PF00155 Aminotransferase class I and II Y880_RS29195 PF12697 Alpha/beta hydrolase family Y880_RS29195 PF08241 Methyltransferase domain Y880_RS29200 PF08241 Methyltransferase domain Y880_RS29215 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y880_RS29215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS29215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS29215 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS29220 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS29220 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y880_RS29220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS29220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS29230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y880_RS29230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS29230 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y880_RS29230 PF02770 Acyl-CoA dehydrogenase, middle domain Y880_RS29245 PF06463 Molybdenum Cofactor Synthesis C Y880_RS29245 PF04055 Radical SAM superfamily Y880_RS29250 PF17805 AsnC-like ligand binding domain Y880_RS29255 PF17805 AsnC-like ligand binding domain Y880_RS29260 PF17805 AsnC-like ligand binding domain Y880_RS29265 PF17805 AsnC-like ligand binding domain Y880_RS29265 PF13404 AsnC-type helix-turn-helix domain Y880_RS29275 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS29280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS29285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y880_RS29290 PF07728 AAA domain (dynein-related subfamily) Y880_RS29290 PF08406 CbbQ/NirQ/NorQ C-terminal Y880_RS29295 PF00510 Cytochrome c oxidase subunit III Y880_RS29300 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Y880_RS29310 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y880_RS29325 PF00027 Cyclic nucleotide-binding domain Y880_RS29325 PF13545 Crp-like helix-turn-helix domain Y880_RS29330 PF03466 LysR substrate binding domain Y880_RS29330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y880_RS29335 PF03475 3-alpha domain Y880_RS29335 PF03473 MOSC domain Y880_RS29345 PF00202 Aminotransferase class-III Y880_RS29350 PF00117 Glutamine amidotransferase class-I Y880_RS29360 PF00196 Bacterial regulatory proteins, luxR family Y880_RS29370 PF01266 FAD dependent oxidoreductase Y880_RS29380 PF04536 TPM domain Y880_RS29390 PF02600 Disulfide bond formation protein DsbB Y880_RS29430 PF02772 S-adenosylmethionine synthetase, central domain Y880_RS29430 PF02773 S-adenosylmethionine synthetase, C-terminal domain Y880_RS29430 PF00438 S-adenosylmethionine synthetase, N-terminal domain Y880_RS29440 PF02780 Transketolase, C-terminal domain Y880_RS29440 PF00456 Transketolase, thiamine diphosphate binding domain Y880_RS29440 PF02779 Transketolase, pyrimidine binding domain Y880_RS29450 PF01261 Xylose isomerase-like TIM barrel Y880_RS29455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y880_RS29455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y880_RS29460 PF00162 Phosphoglycerate kinase Y880_RS29475 PF01116 Fructose-bisphosphate aldolase class-II Y880_RS29490 PF08241 Methyltransferase domain Y880_RS29500 PF01863 Protein of unknown function DUF45 Y880_RS29510 PF13419 Haloacid dehalogenase-like hydrolase Y880_RS29515 PF05656 Protein of unknown function (DUF805) Y880_RS29520 PF12833 Helix-turn-helix domain Y880_RS29520 PF02311 AraC-like ligand binding domain Y880_RS29525 PF02627 Carboxymuconolactone decarboxylase family Y880_RS29535 PF01679 Proteolipid membrane potential modulator Y880_RS29555 PF09234 Domain of unknown function (DUF1963) Y880_RS29560 PF18642 Immunomodulating metalloprotease helical domain Y880_RS29560 PF13402 Peptidase M60, enhancin and enhancin-like Y880_RS29560 PF18650 Immunomodulating metalloprotease N-terminal domain Y880_RS29570 PF02661 Fic/DOC family Y880_RS29585 PF03707 Bacterial signalling protein N terminal repeat Y880_RS29585 PF00563 EAL domain Y880_RS29585 PF00990 Diguanylate cyclase, GGDEF domain Y880_RS29590 PF03979 Sigma-70 factor, region 1.1 Y880_RS29590 PF00140 Sigma-70 factor, region 1.2 Y880_RS29590 PF04542 Sigma-70 region 2 Y880_RS29590 PF04545 Sigma-70, region 4 Y880_RS29590 PF04546 Sigma-70, non-essential region Y880_RS29590 PF04539 Sigma-70 region 3 Y880_RS29595 PF08278 DNA primase DnaG DnaB-binding Y880_RS29595 PF10410 DnaB-helicase binding domain of primase Y880_RS29595 PF01807 CHC2 zinc finger Y880_RS29595 PF08275 DNA primase catalytic core, N-terminal domain Y880_RS29595 PF13662 Toprim domain Y880_RS29605 PF01165 Ribosomal protein S21 Y880_RS29610 PF00814 Glycoprotease family Y880_RS29615 PF02660 Glycerol-3-phosphate acyltransferase Y880_RS29620 PF02152 Dihydroneopterin aldolase Y880_RS29630 PF01966 HD domain Y880_RS29630 PF01743 Poly A polymerase head domain Y880_RS29630 PF12627 Probable RNA and SrmB- binding site of polymerase A Y880_RS29640 PF04293 SpoVR like protein Y880_RS29645 PF04285 Protein of unknown function (DUF444) Y880_RS29650 PF08298 PrkA AAA domain Y880_RS29650 PF06798 PrkA serine protein kinase C-terminal domain Y880_RS29655 PF00581 Rhodanese-like domain Y880_RS29660 PF00149 Calcineurin-like phosphoesterase Y880_RS29665 PF04379 ApaG domain Y880_RS29670 PF00398 Ribosomal RNA adenine dimethylase Y880_RS29675 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y880_RS29680 PF09312 SurA N-terminal domain Y880_RS29680 PF00639 PPIC-type PPIASE domain Y880_RS29685 PF03968 OstA-like protein Y880_RS29685 PF04453 LPS transport system D Y880_RS29690 PF01636 Phosphotransferase enzyme family Y880_RS29695 PF00483 Nucleotidyl transferase Y880_RS29700 PF00226 DnaJ domain Y880_RS29700 PF05099 Tellurite resistance protein TerB Y880_RS29710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y880_RS29710 PF07730 Histidine kinase Y880_RS29715 PF00196 Bacterial regulatory proteins, luxR family Y880_RS29715 PF00072 Response regulator receiver domain Y880_RS29725 PF00005 ABC transporter Y880_RS29725 PF08402 TOBE domain Y880_RS29735 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS29740 PF00528 Binding-protein-dependent transport system inner membrane component Y880_RS29745 PF00834 Ribulose-phosphate 3 epimerase family Y880_RS29750 PF13419 Haloacid dehalogenase-like hydrolase Y880_RS29755 PF04715 Anthranilate synthase component I, N terminal region Y880_RS29755 PF00425 chorismate binding enzyme Y880_RS29760 PF11112 Pyocin activator protein PrtN Y880_RS29765 PF00717 Peptidase S24-like Y880_RS29765 PF01381 Helix-turn-helix Y880_RS29770 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y880_RS29820 PF04984 Phage tail sheath protein subtilisin-like domain Y880_RS29820 PF17482 Phage tail sheath C-terminal domain Y880_RS29855 PF00182 Chitinase class I Y880_RS29945 PF00117 Glutamine amidotransferase class-I Y880_RS29950 PF00591 Glycosyl transferase family, a/b domain Y880_RS29950 PF02885 Glycosyl transferase family, helical bundle domain Y880_RS29955 PF00218 Indole-3-glycerol phosphate synthase Y880_RS29960 PF13545 Crp-like helix-turn-helix domain Y880_RS29960 PF00027 Cyclic nucleotide-binding domain Y880_RS29965 PF02566 OsmC-like protein Y880_RS29970 PF02675 S-adenosylmethionine decarboxylase Y880_RS29975 PF03232 Ubiquinone biosynthesis protein COQ7 Y880_RS29980 PF01230 HIT domain Y880_RS29985 PF17862 AAA+ lid domain Y880_RS29985 PF06480 FtsH Extracellular Y880_RS29985 PF00004 ATPase family associated with various cellular activities (AAA) Y880_RS29985 PF01434 Peptidase family M41 Y880_RS29990 PF00106 short chain dehydrogenase Y880_RS30000 PF03060 Nitronate monooxygenase Y880_RS30005 PF03653 Uncharacterised protein family (UPF0093) Y880_RS30010 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y880_RS30010 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y880_RS30025 PF01521 Iron-sulphur cluster biosynthesis Y880_RS30030 PF03702 Anhydro-N-acetylmuramic acid kinase Y880_RS30035 PF01551 Peptidase family M23 Y880_RS30035 PF04225 Opacity-associated protein A LysM-like domain Y880_RS30040 PF00579 tRNA synthetases class I (W and Y)