locus-tag	class	description
Y880_RS00125	COG2831	hemolysin activation secretion protein
Y880_RS00160	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Y880_RS00170	COG0583	DNA-binding transcription factor activity
Y880_RS00190	COG0154	amidase activity
Y880_RS00195	COG0463	Glycosyl transferase, family 2
Y880_RS00210	COG0583	DNA-binding transcription factor activity
Y880_RS00310	COG2015	COG2015, Alkyl sulfatase and related hydrolases
Y880_RS00315	COG2910	NAD(P)H-binding
Y880_RS00335	COG1024	Enoyl-CoA hydratase
Y880_RS00340	COG1960	acyl-CoA dehydrogenase activity
Y880_RS00355	COG2720	vancomycin resistance protein
Y880_RS00365	COG3180	Ammonia monooxygenase
Y880_RS00445	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Y880_RS00510	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Y880_RS00520	COG4206	TonB-dependent receptor
Y880_RS00530	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Y880_RS00535	COG0583	DNA-binding transcription factor activity
Y880_RS00565	COG1113	amino acid transport
Y880_RS00580	COG2079	MmgE PrpD family protein
Y880_RS00595	COG0372	Belongs to the citrate synthase family
Y880_RS00605	COG1802	Transcriptional regulator
Y880_RS00615	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Y880_RS00640	COG0656	L-ascorbic acid biosynthetic process
Y880_RS00655	COG3023	N-Acetylmuramoyl-L-alanine amidase
Y880_RS00670	COG0546	phosphoglycolate phosphatase activity
Y880_RS00685	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Y880_RS00825	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
Y880_RS00840	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Y880_RS00870	COG0515	serine threonine protein kinase
Y880_RS00890	COG2267	carboxylic ester hydrolase activity
Y880_RS00905	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Y880_RS00910	COG2885	chlorophyll binding
Y880_RS00915	COG0204	Acyl-transferase
Y880_RS00940	COG0386	Belongs to the glutathione peroxidase family
Y880_RS00945	COG1309	transcriptional regulator
Y880_RS00955	COG1307	EDD domain protein, DegV family
Y880_RS00985	COG5002	protein histidine kinase activity
Y880_RS00985	COG5001	Diguanylate cyclase
Y880_RS00985	COG3447	MASE1 domain protein
Y880_RS00990	COG0450	alkyl hydroperoxide reductase
Y880_RS00995	COG0492	ferredoxin-NADP+ reductase activity
Y880_RS01035	COG0271	Belongs to the BolA IbaG family
Y880_RS01055	COG5002	protein histidine kinase activity
Y880_RS01055	COG5001	Diguanylate cyclase
Y880_RS01065	COG3321	synthase
Y880_RS01065	COG0604	alcohol dehydrogenase
Y880_RS01065	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS01090	COG1113	amino acid transport
Y880_RS01150	COG0583	DNA-binding transcription factor activity
Y880_RS01155	COG0583	DNA-binding transcription factor activity
Y880_RS01160	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
Y880_RS01165	COG1960	acyl-CoA dehydrogenase activity
Y880_RS01175	COG2079	MmgE PrpD family protein
Y880_RS01185	COG2301	Belongs to the HpcH HpaI aldolase family
Y880_RS01280	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
Y880_RS01350	COG2239	Acts as a magnesium transporter
Y880_RS01360	COG4807	Protein conserved in bacteria
Y880_RS01380	COG3038	cytochrome b561
Y880_RS01430	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Y880_RS01435	COG2205	protein histidine kinase activity
Y880_RS01435	COG0784	Response regulator, receiver
Y880_RS01435	COG5002	protein histidine kinase activity
Y880_RS01465	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Y880_RS01470	COG3956	TIGRFAM MazG family protein
Y880_RS01480	COG3122	Protein conserved in bacteria
Y880_RS01520	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Y880_RS01540	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Y880_RS01575	COG3118	belongs to the thioredoxin family
Y880_RS01620	COG0783	Belongs to the Dps family
Y880_RS01650	COG0824	Thioesterase
Y880_RS01680	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
Y880_RS01685	COG0602	queuosine metabolic process
Y880_RS01700	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
Y880_RS01725	COG1051	belongs to the nudix hydrolase family
Y880_RS01745	COG3188	usher protein
Y880_RS01750	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Y880_RS01805	COG0425	Belongs to the sulfur carrier protein TusA family
Y880_RS01815	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Y880_RS01830	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
Y880_RS01835	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Y880_RS01865	COG0183	Belongs to the thiolase family
Y880_RS01875	COG2030	dehydratase
Y880_RS01890	COG1960	acyl-CoA dehydrogenase activity
Y880_RS01895	COG1024	Enoyl-CoA hydratase
Y880_RS01900	COG1960	acyl-CoA dehydrogenase activity
Y880_RS01905	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS01930	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS01935	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS01960	COG0625	glutathione transferase activity
Y880_RS01965	COG0653	protein targeting
Y880_RS01980	COG2860	membrane
Y880_RS02020	COG1199	ATP-dependent helicase activity
Y880_RS02035	COG2885	chlorophyll binding
Y880_RS02050	COG2610	gluconate transmembrane transporter activity
Y880_RS02055	COG1929	Belongs to the glycerate kinase type-1 family
Y880_RS02065	COG3133	Outer membrane lipoprotein
Y880_RS02070	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Y880_RS02070	COG2111	Na H antiporter
Y880_RS02075	COG1006	Multisubunit Na H antiporter MnhC subunit
Y880_RS02080	COG0651	ATP synthesis coupled electron transport
Y880_RS02085	COG1863	multisubunit Na H antiporter MnhE subunit
Y880_RS02090	COG2212	antiporter activity
Y880_RS02105	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Y880_RS02125	COG3189	MarR family transcriptional regulator
Y880_RS02140	COG0326	Molecular chaperone. Has ATPase activity
Y880_RS02190	COG1815	bacterial-type flagellum-dependent cell motility
Y880_RS02200	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
Y880_RS02210	COG4787	bacterial-type flagellum-dependent cell motility
Y880_RS02255	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Y880_RS02260	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS02290	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
Y880_RS02300	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Y880_RS02305	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Y880_RS02310	COG1216	Glycosyl transferase, family 2
Y880_RS02310	COG0438	transferase activity, transferring glycosyl groups
Y880_RS02315	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Y880_RS02325	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
Y880_RS02330	COG1516	flagellar protein fliS
Y880_RS02385	COG2882	bacterial-type flagellum organization
Y880_RS02400	COG0477	Major facilitator Superfamily
Y880_RS02405	COG2207	Transcriptional regulator
Y880_RS02420	COG2133	pyrroloquinoline quinone binding
Y880_RS02425	COG4628	conserved protein (DUF2132)
Y880_RS02440	COG1132	(ABC) transporter
Y880_RS02470	COG2885	chlorophyll binding
Y880_RS02475	COG2199	diguanylate cyclase activity
Y880_RS02485	COG0242	peptide deformylase activity
Y880_RS02515	COG0667	Aldo Keto reductase
Y880_RS02520	COG0583	DNA-binding transcription factor activity
Y880_RS02560	COG2197	response regulator
Y880_RS02565	COG0604	alcohol dehydrogenase
Y880_RS02565	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS02565	COG3321	synthase
Y880_RS02580	COG3257	ureidoglycine aminohydrolase activity
Y880_RS02585	COG0583	DNA-binding transcription factor activity
Y880_RS02615	COG0531	amino acid
Y880_RS02650	COG1943	Transposase
Y880_RS02655	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Y880_RS02660	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Y880_RS02660	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Y880_RS02665	COG0745	RESPONSE REGULATOR receiver
Y880_RS02670	COG2205	protein histidine kinase activity
Y880_RS02685	COG2226	methyltransferase
Y880_RS02700	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Y880_RS02725	COG0753	catalase activity
Y880_RS02730	COG0861	Integral membrane protein TerC family
Y880_RS02735	COG2951	lytic endotransglycosylase activity
Y880_RS02740	COG3005	denitrification pathway
Y880_RS02755	COG3062	negative regulation of establishment of protein localization
Y880_RS02765	COG4459	periplasmic nitrate reductase
Y880_RS02785	COG5002	protein histidine kinase activity
Y880_RS02785	COG5001	Diguanylate cyclase
Y880_RS02785	COG3447	MASE1 domain protein
Y880_RS02810	COG0625	glutathione transferase activity
Y880_RS02820	COG1960	acyl-CoA dehydrogenase activity
Y880_RS02825	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Y880_RS02850	COG2818	Glycosylase
Y880_RS02865	COG3829	transcription factor binding
Y880_RS02875	COG0791	NLP P60 protein
Y880_RS02880	COG0791	NLP P60 protein
Y880_RS02890	COG0583	DNA-binding transcription factor activity
Y880_RS02895	COG1335	isochorismatase
Y880_RS02945	COG2211	Major facilitator Superfamily
Y880_RS02955	COG0367	asparagine synthase
Y880_RS02960	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS02970	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Y880_RS02995	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
Y880_RS03005	COG2249	NAD(P)H dehydrogenase (quinone) activity
Y880_RS03010	COG2249	NAD(P)H dehydrogenase (quinone) activity
Y880_RS03030	COG2207	Transcriptional regulator
Y880_RS03040	COG1566	PFAM secretion protein HlyD family protein
Y880_RS03045	COG1566	PFAM secretion protein HlyD family protein
Y880_RS03105	COG4191	Histidine kinase
Y880_RS03105	COG0784	Response regulator, receiver
Y880_RS03165	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS03170	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Y880_RS03180	COG1126	abc transporter atp-binding protein
Y880_RS03190	COG0765	amino acid transport
Y880_RS03210	COG0477	Major facilitator Superfamily
Y880_RS03250	COG1802	Transcriptional regulator
Y880_RS03260	COG4206	TonB-dependent receptor
Y880_RS03275	COG0778	Nitroreductase
Y880_RS03295	COG0406	alpha-ribazole phosphatase activity
Y880_RS03315	COG1960	acyl-CoA dehydrogenase activity
Y880_RS03375	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Y880_RS03380	COG1230	cation diffusion facilitator family transporter
Y880_RS03400	COG3712	iron ion homeostasis
Y880_RS03430	COG0121	glutamine amidotransferase
Y880_RS03440	COG0583	DNA-binding transcription factor activity
Y880_RS03460	COG2814	Major facilitator Superfamily
Y880_RS03510	COG4774	siderophore transport
Y880_RS03525	COG4319	ketosteroid isomerase
Y880_RS03530	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Y880_RS03540	COG0583	DNA-binding transcription factor activity
Y880_RS03555	COG1253	flavin adenine dinucleotide binding
Y880_RS03575	COG1902	pentaerythritol trinitrate reductase activity
Y880_RS03605	COG1126	abc transporter atp-binding protein
Y880_RS03610	COG0765	amino acid transport
Y880_RS03615	COG0765	amino acid transport
Y880_RS03630	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS03635	COG0189	ligase activity
Y880_RS03640	COG1982	Orn Lys Arg decarboxylase major
Y880_RS03645	COG2197	response regulator
Y880_RS03655	COG3795	YCII-related domain
Y880_RS03665	COG4941	Belongs to the sigma-70 factor family
Y880_RS03670	COG2814	Major facilitator Superfamily
Y880_RS03680	COG3795	YCII-related domain
Y880_RS03695	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Y880_RS03710	COG5006	permease, DMT superfamily
Y880_RS03740	COG0384	phenazine biosynthesis protein PhzF
Y880_RS03745	COG2020	methyltransferase activity
Y880_RS03750	COG3634	alkyl hydroperoxide reductase activity
Y880_RS03755	COG1309	transcriptional regulator
Y880_RS03770	COG4221	oxidoreductase activity
Y880_RS03775	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS03825	COG1247	-acetyltransferase
Y880_RS03835	COG4221	oxidoreductase activity
Y880_RS03840	COG2207	Transcriptional regulator
Y880_RS03850	COG1450	Type ii and iii secretion system protein
Y880_RS03860	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Y880_RS03885	COG0438	transferase activity, transferring glycosyl groups
Y880_RS03890	COG0463	Glycosyl transferase, family 2
Y880_RS03895	COG0438	transferase activity, transferring glycosyl groups
Y880_RS03965	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
Y880_RS03990	COG0210	DNA helicase
Y880_RS04000	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
Y880_RS04000	COG0116	Belongs to the methyltransferase superfamily
Y880_RS04005	COG1196	nuclear chromosome segregation
Y880_RS04005	COG3264	Mechanosensitive ion channel
Y880_RS04020	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Y880_RS04035	COG0583	DNA-binding transcription factor activity
Y880_RS04045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Y880_RS04100	COG0488	(ABC) transporter
Y880_RS04135	COG5001	Diguanylate cyclase
Y880_RS04135	COG3300	MHYT domain
Y880_RS04145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS04150	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS04165	COG2832	Protein of unknown function (DUF454)
Y880_RS04205	COG1987	bacterial-type flagellum assembly
Y880_RS04225	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
Y880_RS04230	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Y880_RS04270	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Y880_RS04275	COG1360	Flagellar Motor Protein
Y880_RS04280	COG1192	Involved in chromosome partitioning
Y880_RS04290	COG0835	chemotaxis
Y880_RS04315	COG1496	oxidoreductase activity
Y880_RS04320	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS04335	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Y880_RS04410	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Y880_RS04415	COG0446	pyridine nucleotide-disulphide oxidoreductase
Y880_RS04430	COG3192	ethanolamine utilization protein
Y880_RS04440	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Y880_RS04455	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Y880_RS04460	COG4413	Urea transporter
Y880_RS04465	COG0469	pyruvate kinase activity
Y880_RS04475	COG2084	Dehydrogenase
Y880_RS04480	COG3622	Belongs to the hyi family
Y880_RS04485	COG3960	tartronate-semialdehyde synthase activity
Y880_RS04495	COG1309	transcriptional regulator
Y880_RS04510	COG2233	PERMEase
Y880_RS04565	COG2252	PERMEase
Y880_RS04580	COG0402	S-adenosylhomocysteine deaminase activity
Y880_RS04610	COG1196	nuclear chromosome segregation
Y880_RS04690	COG1960	acyl-CoA dehydrogenase activity
Y880_RS04720	COG2076	Multidrug Resistance protein
Y880_RS04760	COG2217	Heavy metal translocating P-type atpase
Y880_RS04770	COG0348	domain, Protein
Y880_RS04780	COG2010	Cytochrome c
Y880_RS04795	COG3278	Belongs to the heme-copper respiratory oxidase family
Y880_RS04800	COG2010	Cytochrome c
Y880_RS04815	COG3278	Belongs to the heme-copper respiratory oxidase family
Y880_RS04830	COG0840	transmembrane signaling receptor activity
Y880_RS04850	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS04855	COG0174	glutamine synthetase
Y880_RS04865	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS04870	COG0251	oxidation-reduction process
Y880_RS04900	COG3738	Protein conserved in bacteria
Y880_RS04915	COG2084	Dehydrogenase
Y880_RS04945	COG2009	succinate dehydrogenase
Y880_RS04950	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
Y880_RS04955	COG1053	succinate dehydrogenase
Y880_RS04960	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
Y880_RS05035	COG2207	Transcriptional regulator
Y880_RS05040	COG2010	Cytochrome c
Y880_RS05040	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Y880_RS05045	COG2010	Cytochrome c
Y880_RS05045	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Y880_RS05050	COG2080	2 iron, 2 sulfur cluster binding
Y880_RS05055	COG1846	Transcriptional regulator
Y880_RS05095	COG0784	Response regulator, receiver
Y880_RS05095	COG2205	protein histidine kinase activity
Y880_RS05095	COG5002	protein histidine kinase activity
Y880_RS05125	COG1022	Amp-dependent synthetase and ligase
Y880_RS05160	COG0625	glutathione transferase activity
Y880_RS05170	COG0628	permease
Y880_RS05175	COG2807	transmembrane transport
Y880_RS05180	COG2186	Transcriptional regulator
Y880_RS05185	COG1250	3-hydroxyacyl-CoA dehydrogenase
Y880_RS05190	COG1024	Enoyl-CoA hydratase
Y880_RS05200	COG1960	acyl-CoA dehydrogenase activity
Y880_RS05230	COG0745	RESPONSE REGULATOR receiver
Y880_RS05270	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Y880_RS05280	COG0840	transmembrane signaling receptor activity
Y880_RS05295	COG2130	NADP-dependent
Y880_RS05310	COG3135	benzoate transporter
Y880_RS05325	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Y880_RS05330	COG0625	glutathione transferase activity
Y880_RS05375	COG2204	response regulator
Y880_RS05415	COG0515	serine threonine protein kinase
Y880_RS05415	COG2815	serine threonine protein kinase
Y880_RS05435	COG2840	Smr protein MutS2
Y880_RS05515	COG4792	protein secretion
Y880_RS05520	COG4791	protein targeting
Y880_RS05525	COG4794	Type iii secretion
Y880_RS05530	COG4790	Type iii secretion
Y880_RS05695	COG1317	bacterial-type flagellum organization
Y880_RS05715	COG0505	Belongs to the CarA family
Y880_RS05725	COG2308	Evidence 4 Homologs of previously reported genes of
Y880_RS05735	COG1305	Transglutaminase-like
Y880_RS05755	COG0183	Belongs to the thiolase family
Y880_RS05770	COG0667	Aldo Keto reductase
Y880_RS05785	COG0519	Catalyzes the synthesis of GMP from XMP
Y880_RS05840	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
Y880_RS05875	COG2909	trisaccharide binding
Y880_RS05880	COG2909	trisaccharide binding
Y880_RS05925	COG4067	protein conserved in archaea
Y880_RS05925	COG0189	ligase activity
Y880_RS05965	COG0668	transmembrane transport
Y880_RS05985	COG0243	molybdopterin cofactor binding
Y880_RS05990	COG2146	nitrite reductase [NAD(P)H] activity
Y880_RS05995	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Y880_RS06000	COG0515	serine threonine protein kinase
Y880_RS06005	COG2223	nitrite transmembrane transporter activity
Y880_RS06015	COG2201	protein-glutamate methylesterase activity
Y880_RS06040	COG0589	response to stress
Y880_RS06060	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Y880_RS06105	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
Y880_RS06110	COG2205	protein histidine kinase activity
Y880_RS06115	COG0745	RESPONSE REGULATOR receiver
Y880_RS06140	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Y880_RS06155	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Y880_RS06165	COG4172	Belongs to the ABC transporter superfamily
Y880_RS06170	COG4239	(ABC) transporter, permease
Y880_RS06175	COG4174	ABC transporter (Permease)
Y880_RS06180	COG4166	transmembrane transport
Y880_RS06185	COG4166	transmembrane transport
Y880_RS06190	COG0741	lytic transglycosylase activity
Y880_RS06190	COG1388	LysM domain
Y880_RS06210	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Y880_RS06225	COG0531	amino acid
Y880_RS06235	COG1024	Enoyl-CoA hydratase
Y880_RS06260	COG0583	DNA-binding transcription factor activity
Y880_RS06265	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS06270	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS06290	COG0616	signal peptide processing
Y880_RS06295	COG0604	alcohol dehydrogenase
Y880_RS06320	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Y880_RS06385	COG3813	Protein conserved in bacteria
Y880_RS06390	COG4977	sequence-specific DNA binding
Y880_RS06400	COG5001	Diguanylate cyclase
Y880_RS06400	COG3706	GGDEF domain
Y880_RS06400	COG4251	negative regulation of phosphorylation
Y880_RS06400	COG2203	Gaf domain
Y880_RS06415	COG2239	Acts as a magnesium transporter
Y880_RS06425	COG3278	Belongs to the heme-copper respiratory oxidase family
Y880_RS06430	COG2354	Protein conserved in bacteria
Y880_RS06440	COG0583	DNA-binding transcription factor activity
Y880_RS06445	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
Y880_RS06465	COG1309	transcriptional regulator
Y880_RS06535	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS06580	COG0417	DNA replication proofreading
Y880_RS06600	COG0625	glutathione transferase activity
Y880_RS06615	COG2366	antibiotic biosynthetic process
Y880_RS06640	COG2197	response regulator
Y880_RS06720	COG1595	DNA-templated transcription, initiation
Y880_RS06750	COG0579	oxidoreductase
Y880_RS06765	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Y880_RS06765	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Y880_RS06770	COG0275	rRNA processing
Y880_RS06775	COG4771	TonB-dependent receptor
Y880_RS06795	COG1944	ATP diphosphatase activity
Y880_RS06820	COG2080	2 iron, 2 sulfur cluster binding
Y880_RS06825	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
Y880_RS06830	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Y880_RS06855	COG0753	catalase activity
Y880_RS06860	COG2010	Cytochrome c
Y880_RS06880	COG2204	response regulator
Y880_RS06895	COG1172	Belongs to the binding-protein-dependent transport system permease family
Y880_RS06900	COG1609	Transcriptional regulator
Y880_RS06905	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Y880_RS06960	COG0583	DNA-binding transcription factor activity
Y880_RS06975	COG0488	(ABC) transporter
Y880_RS07020	COG2194	sulfuric ester hydrolase activity
Y880_RS07040	COG0784	Response regulator, receiver
Y880_RS07040	COG2205	protein histidine kinase activity
Y880_RS07055	COG3851	Histidine kinase
Y880_RS07115	COG2205	protein histidine kinase activity
Y880_RS07135	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Y880_RS07140	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Y880_RS07145	COG0583	DNA-binding transcription factor activity
Y880_RS07150	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Y880_RS07165	COG2031	fatty acid transporter
Y880_RS07170	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS07175	COG2610	gluconate transmembrane transporter activity
Y880_RS07180	COG3829	transcription factor binding
Y880_RS07180	COG3290	protein histidine kinase activity
Y880_RS07185	COG2271	Major facilitator Superfamily
Y880_RS07195	COG0179	Fumarylacetoacetate (FAA) hydrolase
Y880_RS07225	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Y880_RS07230	COG1960	acyl-CoA dehydrogenase activity
Y880_RS07235	COG0789	Transcriptional regulator
Y880_RS07240	COG3204	pilus organization
Y880_RS07250	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS07255	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS07260	COG1309	transcriptional regulator
Y880_RS07300	COG1522	sequence-specific DNA binding
Y880_RS07320	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Y880_RS07335	COG0028	Belongs to the TPP enzyme family
Y880_RS07365	COG0531	amino acid
Y880_RS07380	COG0564	pseudouridine synthase activity
Y880_RS07405	COG2207	Transcriptional regulator
Y880_RS07420	COG1595	DNA-templated transcription, initiation
Y880_RS07440	COG0583	DNA-binding transcription factor activity
Y880_RS07455	COG4771	TonB-dependent receptor
Y880_RS07465	COG4174	ABC transporter (Permease)
Y880_RS07470	COG4239	(ABC) transporter, permease
Y880_RS07495	COG2132	Multicopper oxidase
Y880_RS07510	COG2814	Major facilitator Superfamily
Y880_RS07515	COG2192	nodulation
Y880_RS07525	COG4206	TonB-dependent receptor
Y880_RS07535	COG5001	Diguanylate cyclase
Y880_RS07540	COG3153	acetyltransferase
Y880_RS07540	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Y880_RS07560	COG2010	Cytochrome c
Y880_RS07565	COG2010	Cytochrome c
Y880_RS07570	COG1113	amino acid transport
Y880_RS07590	COG1522	sequence-specific DNA binding
Y880_RS07600	COG0367	asparagine synthase
Y880_RS07605	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
Y880_RS07610	COG0596	Alpha beta hydrolase
Y880_RS07680	COG0300	oxidoreductase activity
Y880_RS07685	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Y880_RS07705	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Y880_RS07710	COG1045	serine acetyltransferase
Y880_RS07715	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Y880_RS07755	COG2814	Major facilitator Superfamily
Y880_RS07760	COG0583	DNA-binding transcription factor activity
Y880_RS07815	COG0583	DNA-binding transcription factor activity
Y880_RS07820	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
Y880_RS07825	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS07830	COG1475	DNA binding
Y880_RS07840	COG3969	phosphoadenosine phosphosulfate
Y880_RS07850	COG3121	Chaperone
Y880_RS07855	COG3188	usher protein
Y880_RS07865	COG3121	Chaperone
Y880_RS07885	COG2323	membrane
Y880_RS07920	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS07935	COG0058	SHG alpha-glucan phosphorylase activity
Y880_RS07960	COG1285	pathogenesis
Y880_RS07980	COG0366	Alpha amylase catalytic
Y880_RS07990	COG0392	lysyltransferase activity
Y880_RS07995	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Y880_RS08045	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
Y880_RS08090	COG1363	Peptidase, m42
Y880_RS08120	COG0784	Response regulator, receiver
Y880_RS08120	COG4191	Histidine kinase
Y880_RS08135	COG2890	protein-(glutamine-N5) methyltransferase activity
Y880_RS08190	COG1309	transcriptional regulator
Y880_RS08195	COG2130	NADP-dependent
Y880_RS08205	COG2084	Dehydrogenase
Y880_RS08220	COG0765	amino acid transport
Y880_RS08225	COG0765	amino acid transport
Y880_RS08260	COG2271	Major facilitator Superfamily
Y880_RS08265	COG3618	amidohydrolase
Y880_RS08280	COG2271	Major facilitator Superfamily
Y880_RS08285	COG4948	Mandelate Racemase Muconate Lactonizing
Y880_RS08295	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS08300	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS08305	COG2995	paraquat-inducible protein a
Y880_RS08310	COG3008	intermembrane lipid transfer
Y880_RS08340	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS08345	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS08350	COG3162	membrane
Y880_RS08355	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Y880_RS08370	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Y880_RS08375	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS08380	COG0531	amino acid
Y880_RS08395	COG2072	flavoprotein involved in K transport
Y880_RS08410	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS08430	COG2409	Drug exporters of the RND superfamily
Y880_RS08435	COG4447	cellulose binding
Y880_RS08445	COG2508	Transcriptional regulator
Y880_RS08475	COG2258	MOSC domain
Y880_RS08595	COG1115	amino acid carrier protein
Y880_RS08635	COG1609	Transcriptional regulator
Y880_RS08645	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Y880_RS08655	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Y880_RS08680	COG2329	Antibiotic biosynthesis monooxygenase
Y880_RS08690	COG1309	transcriptional regulator
Y880_RS08715	COG1064	alcohol dehydrogenase
Y880_RS08720	COG2207	Transcriptional regulator
Y880_RS08725	COG0640	Transcriptional regulator
Y880_RS08735	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Y880_RS08740	COG0431	NADPH-dependent FMN reductase
Y880_RS08785	COG4772	TonB-dependent receptor
Y880_RS08820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS08835	COG1053	succinate dehydrogenase
Y880_RS08840	COG2188	Transcriptional regulator
Y880_RS08845	COG3469	chitinase activity
Y880_RS08880	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS08885	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
Y880_RS08895	COG2175	clavaminate synthase activity
Y880_RS08905	COG1396	sequence-specific DNA binding
Y880_RS08925	COG0583	DNA-binding transcription factor activity
Y880_RS08930	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS08940	COG1609	Transcriptional regulator
Y880_RS08945	COG3265	gluconokinase activity
Y880_RS08960	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS08980	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS08985	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Y880_RS08990	COG1116	anion transmembrane transporter activity
Y880_RS09005	COG4977	sequence-specific DNA binding
Y880_RS09005	COG1917	Cupin 2, conserved barrel domain protein
Y880_RS09020	COG4771	TonB-dependent receptor
Y880_RS09040	COG1175	transmembrane transport
Y880_RS09055	COG0246	Mannitol dehydrogenase
Y880_RS09060	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Y880_RS09090	COG1464	Belongs to the NlpA lipoprotein family
Y880_RS09100	COG2011	ABC-type metal ion transport system permease component
Y880_RS09105	COG0584	glycerophosphoryl diester phosphodiesterase
Y880_RS09110	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Y880_RS09115	COG3829	transcription factor binding
Y880_RS09140	COG3829	transcription factor binding
Y880_RS09230	COG4566	intracellular signal transduction
Y880_RS09260	COG1304	FMN binding
Y880_RS09275	COG0735	belongs to the Fur family
Y880_RS09300	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS09395	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Y880_RS09435	COG0583	DNA-binding transcription factor activity
Y880_RS09445	COG1335	isochorismatase
Y880_RS09565	COG0404	The glycine cleavage system catalyzes the degradation of glycine
Y880_RS09570	COG1760	l-serine dehydratase
Y880_RS09595	COG0583	DNA-binding transcription factor activity
Y880_RS09625	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Y880_RS09675	COG3712	iron ion homeostasis
Y880_RS09680	COG1595	DNA-templated transcription, initiation
Y880_RS09685	COG0583	DNA-binding transcription factor activity
Y880_RS09705	COG0625	glutathione transferase activity
Y880_RS09740	COG0642	Histidine kinase
Y880_RS09745	COG3258	Cytochrome c
Y880_RS09750	COG2863	cytochrome
Y880_RS09755	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Y880_RS09820	COG2318	DinB family
Y880_RS09835	COG0590	tRNA wobble adenosine to inosine editing
Y880_RS09840	COG2807	transmembrane transport
Y880_RS09875	COG3485	protocatechuate 3,4-dioxygenase
Y880_RS09885	COG4948	Mandelate Racemase Muconate Lactonizing
Y880_RS09910	COG4638	Rieske (2fe-2S)
Y880_RS09915	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
Y880_RS09920	COG0543	2 iron, 2 sulfur cluster binding
Y880_RS09920	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Y880_RS09980	COG1538	Outer membrane efflux protein
Y880_RS09985	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS09990	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS10020	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Y880_RS10030	COG1115	amino acid carrier protein
Y880_RS10040	COG0667	Aldo Keto reductase
Y880_RS10045	COG4589	Belongs to the CDS family
Y880_RS10070	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Y880_RS10080	COG0729	surface antigen
Y880_RS10130	COG1960	acyl-CoA dehydrogenase activity
Y880_RS10145	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Y880_RS10155	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS10190	COG0659	secondary active sulfate transmembrane transporter activity
Y880_RS10215	COG5001	Diguanylate cyclase
Y880_RS10215	COG4251	negative regulation of phosphorylation
Y880_RS10215	COG2203	Gaf domain
Y880_RS10215	COG3706	GGDEF domain
Y880_RS10240	COG4191	Histidine kinase
Y880_RS10270	COG1522	sequence-specific DNA binding
Y880_RS10285	COG2249	NAD(P)H dehydrogenase (quinone) activity
Y880_RS10305	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS10305	COG2205	protein histidine kinase activity
Y880_RS10305	COG2198	Histidine kinase
Y880_RS10305	COG0784	Response regulator, receiver
Y880_RS10360	COG4771	TonB-dependent receptor
Y880_RS10365	COG2197	response regulator
Y880_RS10380	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Y880_RS10390	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Y880_RS10395	COG1960	acyl-CoA dehydrogenase activity
Y880_RS10405	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Y880_RS10410	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Y880_RS10415	COG0583	DNA-binding transcription factor activity
Y880_RS10450	COG2168	tRNA wobble position uridine thiolation
Y880_RS10455	COG2920	part of a sulfur-relay system
Y880_RS10460	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Y880_RS10465	COG0435	Glutathione S-transferase
Y880_RS10480	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Y880_RS10495	COG0492	ferredoxin-NADP+ reductase activity
Y880_RS10510	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Y880_RS10515	COG0542	response to heat
Y880_RS10525	COG1278	Cold shock
Y880_RS10565	COG2850	peptidyl-arginine hydroxylation
Y880_RS10570	COG2153	protein acetylation
Y880_RS10670	COG2226	methyltransferase
Y880_RS10690	COG2056	Na+-H+ antiporter family
Y880_RS10695	COG0840	transmembrane signaling receptor activity
Y880_RS10755	COG3604	Transcriptional regulator
Y880_RS10760	COG0720	synthase
Y880_RS10800	COG2165	general secretion pathway protein
Y880_RS10810	COG1459	type II secretion system
Y880_RS10815	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Y880_RS10825	COG4106	trans-aconitate 2-methyltransferase activity
Y880_RS10835	COG0583	DNA-binding transcription factor activity
Y880_RS10890	COG1959	2 iron, 2 sulfur cluster binding
Y880_RS10895	COG1607	acyl-coa hydrolase
Y880_RS10970	COG0542	response to heat
Y880_RS10985	COG1280	lysine exporter protein (LysE YggA)
Y880_RS11010	COG0243	molybdopterin cofactor binding
Y880_RS11015	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Y880_RS11020	COG0446	pyridine nucleotide-disulphide oxidoreductase
Y880_RS11020	COG1902	pentaerythritol trinitrate reductase activity
Y880_RS11030	COG0789	Transcriptional regulator
Y880_RS11210	COG0024	Methionine aminopeptidase
Y880_RS11240	COG1295	ribonuclease BN
Y880_RS11250	COG1238	metal cluster binding
Y880_RS11335	COG2837	iron assimilation
Y880_RS11355	COG1051	belongs to the nudix hydrolase family
Y880_RS11410	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS11460	COG3655	Transcriptional regulator
Y880_RS11490	COG5434	Belongs to the glycosyl hydrolase 28 family
Y880_RS11530	COG0745	RESPONSE REGULATOR receiver
Y880_RS11540	COG2853	Lipoprotein
Y880_RS11550	COG2188	Transcriptional regulator
Y880_RS11595	COG0842	Transport permease protein
Y880_RS11600	COG1131	(ABC) transporter
Y880_RS11605	COG0625	glutathione transferase activity
Y880_RS11730	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Y880_RS11735	COG0270	DNA (cytosine-5-)-methyltransferase activity
Y880_RS11970	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Y880_RS11980	COG3387	PFAM Glycoside hydrolase 15-related
Y880_RS12010	COG2814	Major facilitator Superfamily
Y880_RS12020	COG0583	DNA-binding transcription factor activity
Y880_RS12025	COG0583	DNA-binding transcription factor activity
Y880_RS12030	COG1396	sequence-specific DNA binding
Y880_RS12045	COG0582	viral genome integration into host DNA
Y880_RS12070	COG0625	glutathione transferase activity
Y880_RS12075	COG1956	GAF domain-containing protein
Y880_RS12080	COG2255	four-way junction helicase activity
Y880_RS12085	COG5002	protein histidine kinase activity
Y880_RS12085	COG2205	protein histidine kinase activity
Y880_RS12085	COG0784	Response regulator, receiver
Y880_RS12090	COG1846	Transcriptional regulator
Y880_RS12095	COG0386	Belongs to the glutathione peroxidase family
Y880_RS12105	COG0436	Aminotransferase
Y880_RS12120	COG2866	Carboxypeptidase
Y880_RS12160	COG3384	dioxygenase
Y880_RS12170	COG1024	Enoyl-CoA hydratase
Y880_RS12180	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
Y880_RS12185	COG3214	Protein conserved in bacteria
Y880_RS12195	COG0583	DNA-binding transcription factor activity
Y880_RS12205	COG0583	DNA-binding transcription factor activity
Y880_RS12210	COG1846	Transcriptional regulator
Y880_RS12215	COG1764	response to oxidative stress
Y880_RS12255	COG4181	ATPase activity
Y880_RS12260	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
Y880_RS12275	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
Y880_RS12290	COG2259	Doxx family
Y880_RS12300	COG0084	hydrolase, TatD family'
Y880_RS12345	COG0714	Associated with various cellular activities
Y880_RS12355	COG0583	DNA-binding transcription factor activity
Y880_RS12365	COG0583	DNA-binding transcription factor activity
Y880_RS12395	COG1309	transcriptional regulator
Y880_RS12410	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Y880_RS12415	COG1960	acyl-CoA dehydrogenase activity
Y880_RS12435	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS12450	COG1595	DNA-templated transcription, initiation
Y880_RS12455	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Y880_RS12465	COG2197	response regulator
Y880_RS12470	COG3047	cAMP biosynthetic process
Y880_RS12470	COG2885	chlorophyll binding
Y880_RS12505	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Y880_RS12535	COG1120	ATPase activity
Y880_RS12545	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Y880_RS12580	COG0583	DNA-binding transcription factor activity
Y880_RS12585	COG1473	amidohydrolase
Y880_RS12590	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS12595	COG4215	(ABC) transporter
Y880_RS12600	COG4160	amino acid transport
Y880_RS12635	COG1309	transcriptional regulator
Y880_RS12640	COG1902	pentaerythritol trinitrate reductase activity
Y880_RS12645	COG2814	Major facilitator Superfamily
Y880_RS12660	COG3038	cytochrome b561
Y880_RS12670	COG2233	PERMEase
Y880_RS12685	COG0183	Belongs to the thiolase family
Y880_RS12700	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Y880_RS12785	COG0084	hydrolase, TatD family'
Y880_RS12805	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Y880_RS12815	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Y880_RS12845	COG1399	metal-binding, possibly nucleic acid-binding protein
Y880_RS12855	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
Y880_RS12855	COG0616	signal peptide processing
Y880_RS12885	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Y880_RS12905	COG0848	biopolymer transport protein
Y880_RS12910	COG0811	peptide transport
Y880_RS12935	COG4591	ABC-type transport system involved in lipoprotein release permease component
Y880_RS12950	COG0584	glycerophosphoryl diester phosphodiesterase
Y880_RS12965	COG1477	protein flavinylation
Y880_RS13000	COG1113	amino acid transport
Y880_RS13010	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Y880_RS13090	COG0589	response to stress
Y880_RS13100	COG0488	(ABC) transporter
Y880_RS13105	COG0741	lytic transglycosylase activity
Y880_RS13125	COG1070	Carbohydrate kinase
Y880_RS13130	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Y880_RS13150	COG0521	Mo-molybdopterin cofactor biosynthetic process
Y880_RS13180	COG1309	transcriptional regulator
Y880_RS13185	COG0625	glutathione transferase activity
Y880_RS13195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Y880_RS13205	COG0004	ammonium transporteR
Y880_RS13230	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS13230	COG2205	protein histidine kinase activity
Y880_RS13235	COG2197	response regulator
Y880_RS13240	COG3171	Protein conserved in bacteria
Y880_RS13245	COG2027	D-alanyl-D-alanine carboxypeptidase
Y880_RS13260	COG3130	regulation of translation
Y880_RS13310	COG0297	glycogen (starch) synthase activity
Y880_RS13335	COG2342	PFAM TM1410 hypothetical-related protein
Y880_RS13350	COG0714	Associated with various cellular activities
Y880_RS13390	COG0745	RESPONSE REGULATOR receiver
Y880_RS13425	COG0308	aminopeptidase N
Y880_RS13435	COG3139	Protein of unknown function (DUF1315)
Y880_RS13445	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
Y880_RS13470	COG1902	pentaerythritol trinitrate reductase activity
Y880_RS13470	COG0446	pyridine nucleotide-disulphide oxidoreductase
Y880_RS13570	COG1286	toxin biosynthetic process
Y880_RS13580	COG0285	dihydrofolate synthase activity
Y880_RS13620	COG2226	methyltransferase
Y880_RS13640	COG0251	oxidation-reduction process
Y880_RS13645	COG0583	DNA-binding transcription factor activity
Y880_RS13665	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS13680	COG0800	Aldolase
Y880_RS13685	COG0596	Alpha beta hydrolase
Y880_RS13720	COG0583	DNA-binding transcription factor activity
Y880_RS13760	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Y880_RS13770	COG0438	transferase activity, transferring glycosyl groups
Y880_RS13775	COG0438	transferase activity, transferring glycosyl groups
Y880_RS13780	COG0367	asparagine synthase
Y880_RS13800	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
Y880_RS13830	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
Y880_RS13860	COG0402	S-adenosylhomocysteine deaminase activity
Y880_RS13875	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS13935	COG0676	glucose-6-phosphate 1-epimerase activity
Y880_RS13950	COG3842	ATPase activity
Y880_RS13955	COG0395	ABC-type sugar transport system, permease component
Y880_RS13960	COG1175	transmembrane transport
Y880_RS14010	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Y880_RS14015	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Y880_RS14020	COG0009	L-threonylcarbamoyladenylate synthase
Y880_RS14035	COG2350	Protein conserved in bacteria
Y880_RS14045	COG0745	RESPONSE REGULATOR receiver
Y880_RS14065	COG0778	Nitroreductase
Y880_RS14070	COG0727	PFAM Uncharacterised protein family (UPF0153)
Y880_RS14075	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Y880_RS14080	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Y880_RS14085	COG1127	ABC transporter
Y880_RS14115	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Y880_RS14115	COG0438	transferase activity, transferring glycosyl groups
Y880_RS14130	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Y880_RS14155	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Y880_RS14165	COG1132	(ABC) transporter
Y880_RS14195	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Y880_RS14200	COG3162	membrane
Y880_RS14220	COG2853	Lipoprotein
Y880_RS14235	COG1560	Kdo2-lipid A biosynthetic process
Y880_RS14245	COG2894	cell division
Y880_RS14255	COG0564	pseudouridine synthase activity
Y880_RS14285	COG1176	ABC-type spermidine putrescine transport system, permease component I
Y880_RS14300	COG0560	Phosphoserine phosphatase
Y880_RS14305	COG3321	synthase
Y880_RS14305	COG0604	alcohol dehydrogenase
Y880_RS14315	COG2200	EAL domain
Y880_RS14365	COG0385	Bile acid
Y880_RS14370	COG2076	Multidrug Resistance protein
Y880_RS14385	COG4772	TonB-dependent receptor
Y880_RS14400	COG0784	Response regulator, receiver
Y880_RS14400	COG2205	protein histidine kinase activity
Y880_RS14480	COG1595	DNA-templated transcription, initiation
Y880_RS14530	COG0537	adenosine 5'-monophosphoramidase activity
Y880_RS14540	COG1643	Atp-dependent helicase
Y880_RS14555	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS14560	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS14565	COG2267	carboxylic ester hydrolase activity
Y880_RS14570	COG2030	dehydratase
Y880_RS14575	COG2814	Major facilitator Superfamily
Y880_RS14620	COG0589	response to stress
Y880_RS14635	COG2084	Dehydrogenase
Y880_RS14640	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
Y880_RS14650	COG3639	organic phosphonate transmembrane transporter activity
Y880_RS14680	COG0583	DNA-binding transcription factor activity
Y880_RS14710	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
Y880_RS14725	COG4221	oxidoreductase activity
Y880_RS14730	COG2124	cytochrome p450
Y880_RS14800	COG3706	GGDEF domain
Y880_RS14800	COG4251	negative regulation of phosphorylation
Y880_RS14800	COG5001	Diguanylate cyclase
Y880_RS14800	COG2203	Gaf domain
Y880_RS14805	COG0514	ATP-dependent DNA helicase (RecQ)
Y880_RS14815	COG0745	RESPONSE REGULATOR receiver
Y880_RS14830	COG0784	Response regulator, receiver
Y880_RS14830	COG0835	chemotaxis
Y880_RS14850	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
Y880_RS14875	COG0697	spore germination
Y880_RS14965	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
Y880_RS14975	COG3454	Phosphonate metabolism
Y880_RS14980	COG4778	phosphonate C-P lyase system protein PhnL
Y880_RS14985	COG4107	phosphonate C-P lyase system protein PhnK
Y880_RS14990	COG3627	carbon phosphorus lyase activity
Y880_RS14995	COG3626	phosphonate metabolism
Y880_RS15010	COG2188	Transcriptional regulator
Y880_RS15015	COG3639	organic phosphonate transmembrane transporter activity
Y880_RS15020	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
Y880_RS15095	COG0583	DNA-binding transcription factor activity
Y880_RS15150	COG1629	transport
Y880_RS15190	COG0508	dehydrogenase complex catalyzes the overall conversion of
Y880_RS15235	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
Y880_RS15245	COG1024	Enoyl-CoA hydratase
Y880_RS15250	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS15270	COG1346	cytolysis
Y880_RS15275	COG1380	Effector of murein hydrolase LrgA
Y880_RS15280	COG0583	DNA-binding transcription factor activity
Y880_RS15305	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Y880_RS15330	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS15340	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Y880_RS15345	COG0431	NADPH-dependent FMN reductase
Y880_RS15355	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS15360	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Y880_RS15365	COG0450	alkyl hydroperoxide reductase
Y880_RS15385	COG0183	Belongs to the thiolase family
Y880_RS15415	COG0367	asparagine synthase
Y880_RS15420	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Y880_RS15420	COG0189	ligase activity
Y880_RS15425	COG1363	Peptidase, m42
Y880_RS15430	COG5002	protein histidine kinase activity
Y880_RS15430	COG2205	protein histidine kinase activity
Y880_RS15430	COG0784	Response regulator, receiver
Y880_RS15450	COG0513	Belongs to the DEAD box helicase family
Y880_RS15455	COG0477	Major facilitator Superfamily
Y880_RS15460	COG0668	transmembrane transport
Y880_RS15465	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Y880_RS15485	COG0791	NLP P60 protein
Y880_RS15535	COG0489	protein tyrosine kinase activity
Y880_RS15590	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Y880_RS15635	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS15645	COG0028	Belongs to the TPP enzyme family
Y880_RS15655	COG1414	Transcriptional regulator
Y880_RS15675	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS15690	COG2264	protein methyltransferase activity
Y880_RS15695	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Y880_RS15730	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS15760	COG0450	alkyl hydroperoxide reductase
Y880_RS15775	COG2223	nitrite transmembrane transporter activity
Y880_RS15780	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Y880_RS15785	COG0243	molybdopterin cofactor binding
Y880_RS15805	COG3842	ATPase activity
Y880_RS15925	COG1105	Belongs to the carbohydrate kinase PfkB family
Y880_RS15935	COG1609	Transcriptional regulator
Y880_RS15940	COG0084	hydrolase, TatD family'
Y880_RS15950	COG0583	DNA-binding transcription factor activity
Y880_RS15990	COG2814	Major facilitator Superfamily
Y880_RS16040	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Y880_RS16080	COG0583	DNA-binding transcription factor activity
Y880_RS16090	COG0183	Belongs to the thiolase family
Y880_RS16095	COG1250	3-hydroxyacyl-CoA dehydrogenase
Y880_RS16100	COG1024	Enoyl-CoA hydratase
Y880_RS16105	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Y880_RS16110	COG1960	acyl-CoA dehydrogenase activity
Y880_RS16115	COG0583	DNA-binding transcription factor activity
Y880_RS16125	COG0477	Major facilitator Superfamily
Y880_RS16130	COG2169	Transcriptional regulator
Y880_RS16130	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Y880_RS16135	COG0531	amino acid
Y880_RS16160	COG0069	glutamate synthase activity
Y880_RS16180	COG3148	PFAM DTW domain containing protein
Y880_RS16190	COG1176	ABC-type spermidine putrescine transport system, permease component I
Y880_RS16195	COG1177	transmembrane transport
Y880_RS16210	COG3530	Putative quorum-sensing-regulated virulence factor
Y880_RS16215	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
Y880_RS16220	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Y880_RS16240	COG1546	Belongs to the CinA family
Y880_RS16295	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
Y880_RS16300	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
Y880_RS16305	COG0583	DNA-binding transcription factor activity
Y880_RS16310	COG2391	methyltransferase activity
Y880_RS16360	COG1115	amino acid carrier protein
Y880_RS16440	COG0024	Methionine aminopeptidase
Y880_RS16450	COG0436	Aminotransferase
Y880_RS16455	COG0025	NhaP-type Na H and K H
Y880_RS16475	COG1393	Belongs to the ArsC family
Y880_RS16480	COG1280	lysine exporter protein (LysE YggA)
Y880_RS16495	COG2166	iron-sulfur cluster assembly
Y880_RS16540	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS16565	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
Y880_RS16570	COG1801	Protein of unknown function DUF72
Y880_RS16600	COG0789	Transcriptional regulator
Y880_RS16615	COG2885	chlorophyll binding
Y880_RS16630	COG1073	alpha beta
Y880_RS16630	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
Y880_RS16630	COG3064	Membrane
Y880_RS16665	COG3706	GGDEF domain
Y880_RS16665	COG5001	Diguanylate cyclase
Y880_RS16665	COG4251	negative regulation of phosphorylation
Y880_RS16665	COG2203	Gaf domain
Y880_RS16700	COG0477	Major facilitator Superfamily
Y880_RS16720	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
Y880_RS16725	COG2197	response regulator
Y880_RS16770	COG1902	pentaerythritol trinitrate reductase activity
Y880_RS16780	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Y880_RS16820	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Y880_RS16845	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Y880_RS16865	COG1607	acyl-coa hydrolase
Y880_RS16890	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Y880_RS16900	COG4536	flavin adenine dinucleotide binding
Y880_RS16910	COG0477	Major facilitator Superfamily
Y880_RS16950	COG2188	Transcriptional regulator
Y880_RS16955	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
Y880_RS16960	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Y880_RS17010	COG0590	tRNA wobble adenosine to inosine editing
Y880_RS17015	COG2132	Multicopper oxidase
Y880_RS17020	COG2130	NADP-dependent
Y880_RS17030	COG0738	Major facilitator superfamily
Y880_RS17090	COG0583	DNA-binding transcription factor activity
Y880_RS17095	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Y880_RS17105	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Y880_RS17120	COG1335	isochorismatase
Y880_RS17130	COG2847	Copper chaperone PCu(A)C
Y880_RS17140	COG0739	heme binding
Y880_RS17180	COG0667	Aldo Keto reductase
Y880_RS17195	COG0436	Aminotransferase
Y880_RS17285	COG1045	serine acetyltransferase
Y880_RS17300	COG3134	Outer membrane lipoprotein
Y880_RS17315	COG1862	Preprotein translocase
Y880_RS17335	COG2200	EAL domain
Y880_RS17345	COG0795	lipopolysaccharide-transporting ATPase activity
Y880_RS17350	COG0795	lipopolysaccharide-transporting ATPase activity
Y880_RS17395	COG4120	Belongs to the binding-protein-dependent transport system permease family
Y880_RS17400	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
Y880_RS17405	COG0471	metal ion transport
Y880_RS17405	COG0490	domain, Protein
Y880_RS17440	COG0583	DNA-binding transcription factor activity
Y880_RS17505	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS17515	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS17545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS17565	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Y880_RS17570	COG2181	nitrate reductase activity
Y880_RS17575	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
Y880_RS17580	COG1140	nitrate reductase beta subunit
Y880_RS17585	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
Y880_RS17590	COG2223	nitrite transmembrane transporter activity
Y880_RS17600	COG3850	Histidine kinase
Y880_RS17605	COG2197	response regulator
Y880_RS17620	COG2226	methyltransferase
Y880_RS17625	COG0300	oxidoreductase activity
Y880_RS17680	COG1566	PFAM secretion protein HlyD family protein
Y880_RS17700	COG0583	DNA-binding transcription factor activity
Y880_RS17710	COG0697	spore germination
Y880_RS17720	COG1595	DNA-templated transcription, initiation
Y880_RS17725	COG3712	iron ion homeostasis
Y880_RS17730	COG4772	TonB-dependent receptor
Y880_RS17780	COG3154	lipid carrier protein
Y880_RS17785	COG0826	peptidase U32
Y880_RS17790	COG0826	peptidase U32
Y880_RS17795	COG0303	'Molybdopterin
Y880_RS17800	COG0521	Mo-molybdopterin cofactor biosynthetic process
Y880_RS17810	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
Y880_RS17820	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Y880_RS17855	COG0318	PFAM AMP-dependent synthetase and ligase
Y880_RS17860	COG0183	Belongs to the thiolase family
Y880_RS17870	COG2207	Transcriptional regulator
Y880_RS17880	COG1294	oxidase, subunit
Y880_RS17885	COG1271	oxidase subunit
Y880_RS17900	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Y880_RS17905	COG1297	OPT oligopeptide transporter protein
Y880_RS17910	COG2175	clavaminate synthase activity
Y880_RS17915	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS17925	COG4521	taurine ABC transporter
Y880_RS17945	COG1946	Acyl-CoA thioesterase
Y880_RS17970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS17970	COG2205	protein histidine kinase activity
Y880_RS17975	COG2199	diguanylate cyclase activity
Y880_RS17975	COG2202	Pas domain
Y880_RS17975	COG2200	EAL domain
Y880_RS17980	COG2197	response regulator
Y880_RS17995	COG0513	Belongs to the DEAD box helicase family
Y880_RS18060	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Y880_RS18100	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Y880_RS18110	COG1960	acyl-CoA dehydrogenase activity
Y880_RS18120	COG0784	Response regulator, receiver
Y880_RS18120	COG2198	Histidine kinase
Y880_RS18120	COG2205	protein histidine kinase activity
Y880_RS18155	COG1702	phosphate starvation-inducible protein PhoH
Y880_RS18165	COG4535	Mg2 and Co2 transporter CorC
Y880_RS18175	COG1434	Gram-negative-bacterium-type cell wall biogenesis
Y880_RS18210	COG2951	lytic endotransglycosylase activity
Y880_RS18240	COG1686	Belongs to the peptidase S11 family
Y880_RS18250	COG2951	lytic endotransglycosylase activity
Y880_RS18255	COG0772	Belongs to the SEDS family
Y880_RS18260	COG0768	penicillin binding
Y880_RS18300	COG0586	Pfam SNARE associated Golgi protein
Y880_RS18310	COG1346	cytolysis
Y880_RS18330	COG0702	epimerase
Y880_RS18345	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Y880_RS18350	COG3284	Transcriptional regulator
Y880_RS18355	COG0531	amino acid
Y880_RS18360	COG4303	Ethanolamine ammonia lyase large subunit
Y880_RS18370	COG0456	acetyltransferase
Y880_RS18385	COG0586	Pfam SNARE associated Golgi protein
Y880_RS18390	COG3228	Belongs to the MtfA family
Y880_RS18400	COG0745	RESPONSE REGULATOR receiver
Y880_RS18420	COG5002	protein histidine kinase activity
Y880_RS18425	COG1131	(ABC) transporter
Y880_RS18445	COG4948	Mandelate Racemase Muconate Lactonizing
Y880_RS18455	COG0142	geranyltranstransferase activity
Y880_RS18480	COG3577	Aspartyl protease
Y880_RS18490	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
Y880_RS18520	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Y880_RS18520	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Y880_RS18545	COG3118	belongs to the thioredoxin family
Y880_RS18575	COG3047	cAMP biosynthetic process
Y880_RS18585	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Y880_RS18605	COG0531	amino acid
Y880_RS18645	COG2197	response regulator
Y880_RS18660	COG3121	Chaperone
Y880_RS18665	COG3188	usher protein
Y880_RS18670	COG3121	Chaperone
Y880_RS18685	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Y880_RS18690	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS18725	COG2271	Major facilitator Superfamily
Y880_RS18730	COG1063	alcohol dehydrogenase
Y880_RS18755	COG2205	protein histidine kinase activity
Y880_RS18765	COG2259	Doxx family
Y880_RS18825	COG1611	Belongs to the LOG family
Y880_RS18865	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS18870	COG3384	dioxygenase
Y880_RS18880	COG2271	Major facilitator Superfamily
Y880_RS18885	COG3971	2-oxopent-4-enoate hydratase activity
Y880_RS18900	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Y880_RS18910	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Y880_RS18915	COG3278	Belongs to the heme-copper respiratory oxidase family
Y880_RS18925	COG1846	Transcriptional regulator
Y880_RS18930	COG2814	Major facilitator Superfamily
Y880_RS18965	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS19005	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Y880_RS19010	COG0022	dehydrogenase e1 component
Y880_RS19020	COG1063	alcohol dehydrogenase
Y880_RS19025	COG4991	sh3 domain protein
Y880_RS19030	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Y880_RS19035	COG1629	transport
Y880_RS19035	COG4774	siderophore transport
Y880_RS19045	COG1120	ATPase activity
Y880_RS19050	COG4592	Periplasmic binding protein
Y880_RS19055	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Y880_RS19065	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS19070	COG0154	amidase activity
Y880_RS19105	COG1959	2 iron, 2 sulfur cluster binding
Y880_RS19110	COG0492	ferredoxin-NADP+ reductase activity
Y880_RS19115	COG0693	protein deglycase activity
Y880_RS19135	COG0251	oxidation-reduction process
Y880_RS19150	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Y880_RS19160	COG2226	methyltransferase
Y880_RS19210	COG2271	Major facilitator Superfamily
Y880_RS19215	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Y880_RS19240	COG0765	amino acid transport
Y880_RS19245	COG0765	amino acid transport
Y880_RS19250	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS19255	COG4566	intracellular signal transduction
Y880_RS19270	COG1960	acyl-CoA dehydrogenase activity
Y880_RS19275	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Y880_RS19295	COG2706	6-phosphogluconolactonase activity
Y880_RS19305	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS19310	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS19400	COG1021	2,3-dihydroxybenzoate-AMP ligase
Y880_RS19425	COG2814	Major facilitator Superfamily
Y880_RS19550	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Y880_RS19680	COG0420	3'-5' exonuclease activity
Y880_RS19690	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Y880_RS19695	COG1074	ATP-dependent DNA helicase activity
Y880_RS19700	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
Y880_RS19710	COG0697	spore germination
Y880_RS19725	COG0840	transmembrane signaling receptor activity
Y880_RS19735	COG0306	phosphate transporter
Y880_RS19795	COG4964	Belongs to the GSP D family
Y880_RS19815	COG0433	COG0433 Predicted ATPase
Y880_RS19855	COG0788	formyltetrahydrofolate deformylase activity
Y880_RS19865	COG2925	Exonuclease
Y880_RS19925	COG0589	response to stress
Y880_RS19935	COG1024	Enoyl-CoA hydratase
Y880_RS19945	COG3706	GGDEF domain
Y880_RS19965	COG0693	protein deglycase activity
Y880_RS19980	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Y880_RS19995	COG0154	amidase activity
Y880_RS20005	COG1473	amidohydrolase
Y880_RS20020	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
Y880_RS20025	COG0426	domain, Protein
Y880_RS20025	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Y880_RS20045	COG0589	response to stress
Y880_RS20065	COG1902	pentaerythritol trinitrate reductase activity
Y880_RS20080	COG1918	ferrous iron import across plasma membrane
Y880_RS20095	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Y880_RS20135	COG1704	LemA family
Y880_RS20160	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS20165	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS20180	COG3642	lipopolysaccharide core region biosynthetic process
Y880_RS20190	COG2205	protein histidine kinase activity
Y880_RS20195	COG0745	RESPONSE REGULATOR receiver
Y880_RS20230	COG3030	protein affecting phage T7 exclusion by the F plasmid
Y880_RS20240	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS20265	COG0668	transmembrane transport
Y880_RS20275	COG0745	RESPONSE REGULATOR receiver
Y880_RS20290	COG2096	Adenosyltransferase
Y880_RS20295	COG0494	nUDIX hydrolase
Y880_RS20320	COG0739	heme binding
Y880_RS20320	COG0741	lytic transglycosylase activity
Y880_RS20320	COG1196	nuclear chromosome segregation
Y880_RS20365	COG0772	Belongs to the SEDS family
Y880_RS20380	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Y880_RS20435	COG2823	Periplasmic or secreted lipoprotein
Y880_RS20440	COG2969	positive regulation of protein catabolic process
Y880_RS20445	COG0625	glutathione transferase activity
Y880_RS20450	COG2857	Cytochrome c1
Y880_RS20455	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
Y880_RS20460	COG0723	plastoquinol--plastocyanin reductase activity
Y880_RS20475	COG0667	Aldo Keto reductase
Y880_RS20480	COG1960	acyl-CoA dehydrogenase activity
Y880_RS20495	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Y880_RS20505	COG2945	thiolester hydrolase activity
Y880_RS20525	COG2951	lytic endotransglycosylase activity
Y880_RS20535	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Y880_RS20575	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Y880_RS20580	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Y880_RS20585	COG1127	ABC transporter
Y880_RS20595	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
Y880_RS20610	COG1137	ATPase activity
Y880_RS20665	COG0312	modulator of DNA gyrase
Y880_RS20675	COG0312	modulator of DNA gyrase
Y880_RS20680	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Y880_RS20690	COG1530	ribonuclease E activity
Y880_RS20705	COG1792	Involved in formation and maintenance of cell shape
Y880_RS20710	COG1077	Cell shape determining protein MreB Mrl
Y880_RS20730	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Y880_RS20735	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Y880_RS20740	COG4676	Protein conserved in bacteria
Y880_RS20760	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
Y880_RS20765	COG4676	Protein conserved in bacteria
Y880_RS20770	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
Y880_RS20790	COG0747	negative chemotaxis
Y880_RS20820	COG0747	negative chemotaxis
Y880_RS20825	COG0601	transmembrane transport
Y880_RS20830	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Y880_RS20835	COG0444	Belongs to the ABC transporter superfamily
Y880_RS20840	COG4608	Belongs to the ABC transporter superfamily
Y880_RS20855	COG1984	allophanate hydrolase subunit 2
Y880_RS20875	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Y880_RS20880	COG4774	siderophore transport
Y880_RS20895	COG2194	sulfuric ester hydrolase activity
Y880_RS20905	COG0019	diaminopimelate decarboxylase activity
Y880_RS21005	COG1252	NADH dehydrogenase
Y880_RS21010	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Y880_RS21085	COG4969	Belongs to the N-Me-Phe pilin family
Y880_RS21125	COG1047	Peptidyl-prolyl cis-trans
Y880_RS21140	COG0196	riboflavin kinase activity
Y880_RS21155	COG3045	CreA protein
Y880_RS21180	COG0142	geranyltranstransferase activity
Y880_RS21195	COG0545	Peptidyl-prolyl cis-trans isomerase
Y880_RS21215	COG1067	ATP-dependent peptidase activity
Y880_RS21240	COG4650	regulator
Y880_RS21255	COG1690	Belongs to the RtcB family
Y880_RS21260	COG3541	Predicted nucleotidyltransferase
Y880_RS21280	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
Y880_RS21305	COG0577	efflux transmembrane transporter activity
Y880_RS21305	COG1136	(ABC) transporter
Y880_RS21310	COG0577	efflux transmembrane transporter activity
Y880_RS21310	COG1136	(ABC) transporter
Y880_RS21315	COG0488	(ABC) transporter
Y880_RS21335	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS21340	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS21365	COG0523	cobalamin synthesis protein
Y880_RS21370	COG2879	small protein
Y880_RS21375	COG1966	Carbon starvation protein
Y880_RS21445	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
Y880_RS21445	COG3608	succinylglutamate desuccinylase aspartoacylase
Y880_RS21450	COG2010	Cytochrome c
Y880_RS21490	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Y880_RS21500	COG0833	amino acid
Y880_RS21505	COG2119	membrane
Y880_RS21520	COG0501	Belongs to the peptidase M48B family
Y880_RS21525	COG0840	transmembrane signaling receptor activity
Y880_RS21530	COG2135	peptidase activity
Y880_RS21535	COG1285	pathogenesis
Y880_RS21595	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
Y880_RS21650	COG1090	epimerase
Y880_RS21655	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
Y880_RS21665	COG0789	Transcriptional regulator
Y880_RS21685	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Y880_RS21740	COG0012	GTP binding
Y880_RS21750	COG4974	Belongs to the 'phage' integrase family
Y880_RS21760	COG4128	Pfam Zonular occludens toxin
Y880_RS21835	COG3549	Plasmid maintenance system killer
Y880_RS21850	COG0288	reversible hydration of carbon dioxide
Y880_RS21860	COG0456	acetyltransferase
Y880_RS21905	COG1840	ABC-type Fe3 transport system, periplasmic component
Y880_RS21910	COG1178	ABC-type Fe3 transport system permease component
Y880_RS21915	COG3008	intermembrane lipid transfer
Y880_RS21920	COG2995	paraquat-inducible protein a
Y880_RS21925	COG2995	paraquat-inducible protein a
Y880_RS21940	COG1183	phosphatidylcholine synthase activity
Y880_RS21955	COG0028	Belongs to the TPP enzyme family
Y880_RS21965	COG3098	single-species biofilm formation
Y880_RS21975	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Y880_RS22015	COG4558	Periplasmic binding protein
Y880_RS22020	COG3720	iron ion transport
Y880_RS22025	COG4771	TonB-dependent receptor
Y880_RS22050	COG0436	Aminotransferase
Y880_RS22060	COG2321	neutral zinc metallopeptidase
Y880_RS22070	COG2252	PERMEase
Y880_RS22085	COG0436	Aminotransferase
Y880_RS22090	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Y880_RS22105	COG4191	Histidine kinase
Y880_RS22210	COG0195	Participates in both transcription termination and antitermination
Y880_RS22245	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Y880_RS22315	COG0497	DNA recombination
Y880_RS22345	COG2186	Transcriptional regulator
Y880_RS22350	COG1620	l-lactate permease
Y880_RS22400	COG0697	spore germination
Y880_RS22420	COG0697	spore germination
Y880_RS22425	COG1522	sequence-specific DNA binding
Y880_RS22435	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS22455	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Y880_RS22485	COG0509	glycine decarboxylation via glycine cleavage system
Y880_RS22525	COG0531	amino acid
Y880_RS22540	COG3276	selenocysteine insertion sequence binding
Y880_RS22555	COG2864	formate dehydrogenase
Y880_RS22560	COG0437	4 iron, 4 sulfur cluster binding
Y880_RS22570	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
Y880_RS22600	COG0463	Glycosyl transferase, family 2
Y880_RS22610	COG0534	Mate efflux family protein
Y880_RS22645	COG2162	N-hydroxyarylamine O-acetyltransferase activity
Y880_RS22670	COG4221	oxidoreductase activity
Y880_RS22675	COG1272	protein, Hemolysin III
Y880_RS22710	COG0023	Translation Initiation Factor
Y880_RS22800	COG2095	MarC family integral membrane protein
Y880_RS22805	COG0683	leucine binding
Y880_RS22820	COG0411	ABC transporter
Y880_RS22865	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Y880_RS22880	COG0443	Heat shock 70 kDa protein
Y880_RS22905	COG0789	Transcriptional regulator
Y880_RS22910	COG2982	Protein involved in outer membrane biogenesis
Y880_RS22915	COG2193	ferroxidase activity
Y880_RS22925	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
Y880_RS22930	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
Y880_RS22995	COG1595	DNA-templated transcription, initiation
Y880_RS23025	COG0583	DNA-binding transcription factor activity
Y880_RS23050	COG4221	oxidoreductase activity
Y880_RS23055	COG2423	ornithine cyclodeaminase activity
Y880_RS23085	COG0583	DNA-binding transcription factor activity
Y880_RS23100	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
Y880_RS23140	COG0668	transmembrane transport
Y880_RS23160	COG5001	Diguanylate cyclase
Y880_RS23160	COG3300	MHYT domain
Y880_RS23170	COG0305	Participates in initiation and elongation during chromosome replication
Y880_RS23200	COG0557	exoribonuclease II activity
Y880_RS23230	COG0330	HflC and HflK could
Y880_RS23235	COG0330	HflC and HflK could
Y880_RS23240	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Y880_RS23260	COG0860	N-Acetylmuramoyl-L-alanine amidase
Y880_RS23265	COG0802	atpase or kinase
Y880_RS23325	COG5001	Diguanylate cyclase
Y880_RS23325	COG3300	MHYT domain
Y880_RS23330	COG3830	Belongs to the UPF0237 family
Y880_RS23330	COG0560	Phosphoserine phosphatase
Y880_RS23340	COG1988	membrane-bound metal-dependent
Y880_RS23355	COG3577	Aspartyl protease
Y880_RS23370	COG3150	esterase
Y880_RS23375	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
Y880_RS23385	COG0494	nUDIX hydrolase
Y880_RS23400	COG1538	Outer membrane efflux protein
Y880_RS23405	COG2249	NAD(P)H dehydrogenase (quinone) activity
Y880_RS23425	COG1960	acyl-CoA dehydrogenase activity
Y880_RS23435	COG0833	amino acid
Y880_RS23475	COG1519	Transferase
Y880_RS23495	COG0667	Aldo Keto reductase
Y880_RS23505	COG1960	acyl-CoA dehydrogenase activity
Y880_RS23510	COG1960	acyl-CoA dehydrogenase activity
Y880_RS23515	COG0367	asparagine synthase
Y880_RS23540	COG1215	transferase activity, transferring glycosyl groups
Y880_RS23560	COG0438	transferase activity, transferring glycosyl groups
Y880_RS23565	COG2192	nodulation
Y880_RS23590	COG0438	transferase activity, transferring glycosyl groups
Y880_RS23595	COG0859	PFAM glycosyl transferase family 9
Y880_RS23600	COG0859	PFAM glycosyl transferase family 9
Y880_RS23645	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
Y880_RS23650	COG1960	acyl-CoA dehydrogenase activity
Y880_RS23665	COG1196	nuclear chromosome segregation
Y880_RS23665	COG3264	Mechanosensitive ion channel
Y880_RS23675	COG0730	response to heat
Y880_RS23680	COG2873	o-acetylhomoserine
Y880_RS23695	COG1192	Involved in chromosome partitioning
Y880_RS23700	COG0583	DNA-binding transcription factor activity
Y880_RS23705	COG2814	Major facilitator Superfamily
Y880_RS23730	COG0493	'glutamate synthase
Y880_RS23735	COG0070	glutamate synthase
Y880_RS23735	COG0069	glutamate synthase activity
Y880_RS23735	COG0067	glutamate synthase
Y880_RS23785	COG0281	malic enzyme
Y880_RS23805	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Y880_RS23920	COG0840	transmembrane signaling receptor activity
Y880_RS23930	COG1126	abc transporter atp-binding protein
Y880_RS23935	COG0765	amino acid transport
Y880_RS23965	COG1051	belongs to the nudix hydrolase family
Y880_RS23970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Y880_RS23975	COG0251	oxidation-reduction process
Y880_RS24005	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Y880_RS24025	COG2986	histidine ammonia-lyase
Y880_RS24030	COG4175	Glycine betaine
Y880_RS24035	COG4176	ABC-type proline glycine betaine transport system permease component
Y880_RS24055	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
Y880_RS24090	COG0402	S-adenosylhomocysteine deaminase activity
Y880_RS24145	COG1217	gtp-binding protein TYPA
Y880_RS24170	COG0668	transmembrane transport
Y880_RS24185	COG3852	Histidine kinase
Y880_RS24205	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Y880_RS24240	COG0793	Belongs to the peptidase S41A family
Y880_RS24245	COG2861	carbohydrate metabolic process
Y880_RS24305	COG0579	oxidoreductase
Y880_RS24315	COG1194	a g-specific adenine glycosylase
Y880_RS24325	COG0673	inositol 2-dehydrogenase activity
Y880_RS24335	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS24380	COG1566	PFAM secretion protein HlyD family protein
Y880_RS24385	COG2814	Major facilitator Superfamily
Y880_RS24395	COG1088	dTDP-glucose 4,6-dehydratase activity
Y880_RS24400	COG1091	dTDP-4-dehydrorhamnose reductase activity
Y880_RS24465	COG1218	3'(2'),5'-bisphosphate nucleotidase
Y880_RS24470	COG0494	nUDIX hydrolase
Y880_RS24475	COG1011	Hydrolase
Y880_RS24480	COG1652	LysM domain
Y880_RS24490	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
Y880_RS24510	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
Y880_RS24520	COG0824	Thioesterase
Y880_RS24525	COG1454	alcohol dehydrogenase
Y880_RS24530	COG1960	acyl-CoA dehydrogenase activity
Y880_RS24535	COG1250	3-hydroxyacyl-CoA dehydrogenase
Y880_RS24535	COG1024	Enoyl-CoA hydratase
Y880_RS24545	COG0778	Nitroreductase
Y880_RS24575	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Y880_RS24580	COG4067	protein conserved in archaea
Y880_RS24580	COG0189	ligase activity
Y880_RS24605	COG2183	response to ionizing radiation
Y880_RS24635	COG0306	phosphate transporter
Y880_RS24640	COG1392	Phosphate transport regulator
Y880_RS24645	COG3025	triphosphatase activity
Y880_RS24650	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Y880_RS24680	COG1178	ABC-type Fe3 transport system permease component
Y880_RS24690	COG0583	DNA-binding transcription factor activity
Y880_RS24705	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Y880_RS24715	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Y880_RS24720	COG0006	proline dipeptidase activity
Y880_RS24745	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
Y880_RS24755	COG0842	Transport permease protein
Y880_RS24760	COG0842	Transport permease protein
Y880_RS24760	COG1129	ABC transporter
Y880_RS24765	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Y880_RS24780	COG2271	Major facilitator Superfamily
Y880_RS24795	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Y880_RS24795	COG2755	lipolytic protein G-D-S-L family
Y880_RS24825	COG0586	Pfam SNARE associated Golgi protein
Y880_RS24830	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
Y880_RS24835	COG2050	protein possibly involved in aromatic compounds catabolism
Y880_RS24845	COG0672	)-iron permease
Y880_RS24850	COG1280	lysine exporter protein (LysE YggA)
Y880_RS24855	COG0861	Integral membrane protein TerC family
Y880_RS24865	COG0488	(ABC) transporter
Y880_RS24920	COG3275	phosphorelay sensor kinase activity
Y880_RS24945	COG0598	Magnesium transport protein CorA
Y880_RS24975	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Y880_RS25045	COG0432	Pfam Uncharacterised protein family UPF0047
Y880_RS25050	COG0004	ammonium transporteR
Y880_RS25055	COG0347	Belongs to the P(II) protein family
Y880_RS25070	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Y880_RS25080	COG0583	DNA-binding transcription factor activity
Y880_RS25095	COG0210	DNA helicase
Y880_RS25100	COG0028	Belongs to the TPP enzyme family
Y880_RS25110	COG0427	acetyl-CoA hydrolase
Y880_RS25120	COG1917	Cupin 2, conserved barrel domain protein
Y880_RS25120	COG1396	sequence-specific DNA binding
Y880_RS25130	COG0251	oxidation-reduction process
Y880_RS25160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS25165	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Y880_RS25170	COG2814	Major facilitator Superfamily
Y880_RS25175	COG1012	belongs to the aldehyde dehydrogenase family
Y880_RS25180	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
Y880_RS25200	COG0747	negative chemotaxis
Y880_RS25215	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Y880_RS25260	COG3245	cytochrome
Y880_RS25280	COG0708	Exodeoxyribonuclease III
Y880_RS25295	COG1561	YicC-like family, N-terminal region
Y880_RS25310	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Y880_RS25340	COG0583	DNA-binding transcription factor activity
Y880_RS25345	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Y880_RS25385	COG3193	protein, possibly involved in utilization of glycolate and propanediol
Y880_RS25400	COG0277	FAD linked oxidase domain protein
Y880_RS25405	COG2186	Transcriptional regulator
Y880_RS25435	COG1253	flavin adenine dinucleotide binding
Y880_RS25440	COG0739	heme binding
Y880_RS25460	COG0573	inorganic phosphate transmembrane transporter activity
Y880_RS25495	COG0477	Major facilitator Superfamily
Y880_RS25500	COG1607	acyl-coa hydrolase
Y880_RS25525	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Y880_RS25530	COG4175	Glycine betaine
Y880_RS25535	COG4176	ABC-type proline glycine betaine transport system permease component
Y880_RS25545	COG1760	l-serine dehydratase
Y880_RS25585	COG3246	L-lysine catabolic process to acetate
Y880_RS25640	COG1902	pentaerythritol trinitrate reductase activity
Y880_RS25640	COG0446	pyridine nucleotide-disulphide oxidoreductase
Y880_RS25645	COG2181	nitrate reductase activity
Y880_RS25645	COG0247	lactate metabolic process
Y880_RS25665	COG3655	Transcriptional regulator
Y880_RS25705	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Y880_RS25705	COG1017	nitric oxide dioxygenase activity
Y880_RS25795	COG0583	DNA-binding transcription factor activity
Y880_RS25810	COG2391	methyltransferase activity
Y880_RS25835	COG5016	pyruvate
Y880_RS25835	COG0511	ligase activity, forming carbon-carbon bonds
Y880_RS25840	COG0439	Biotin carboxylase
Y880_RS25845	COG0583	DNA-binding transcription factor activity
Y880_RS25860	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Y880_RS25865	COG0826	peptidase U32
Y880_RS25890	COG0210	DNA helicase
Y880_RS25900	COG0427	acetyl-CoA hydrolase
Y880_RS25915	COG0438	transferase activity, transferring glycosyl groups
Y880_RS25960	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Y880_RS25965	COG2755	lipolytic protein G-D-S-L family
Y880_RS25965	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Y880_RS26005	COG0679	Auxin Efflux Carrier
Y880_RS26015	COG2851	Citrate transporter
Y880_RS26020	COG0861	Integral membrane protein TerC family
Y880_RS26025	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
Y880_RS26030	COG1690	Belongs to the RtcB family
Y880_RS26075	COG0700	Nucleoside recognition
Y880_RS26080	COG1301	dicarboxylic acid transport
Y880_RS26105	COG5002	protein histidine kinase activity
Y880_RS26110	COG3023	N-Acetylmuramoyl-L-alanine amidase
Y880_RS26115	COG2095	MarC family integral membrane protein
Y880_RS26140	COG3245	cytochrome
Y880_RS26175	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
Y880_RS26180	COG0735	belongs to the Fur family
Y880_RS26190	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Y880_RS26205	COG2011	ABC-type metal ion transport system permease component
Y880_RS26235	COG0531	amino acid
Y880_RS26245	COG4191	Histidine kinase
Y880_RS26280	COG4651	solute:proton antiporter activity
Y880_RS26280	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Y880_RS26285	COG1607	acyl-coa hydrolase
Y880_RS26295	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS26300	COG0174	glutamine synthetase
Y880_RS26305	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Y880_RS26310	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS26335	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Y880_RS26335	COG4651	solute:proton antiporter activity
Y880_RS26340	COG0477	Major facilitator Superfamily
Y880_RS26350	COG0523	cobalamin synthesis protein
Y880_RS26395	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Y880_RS26415	COG2358	TRAP transporter, solute receptor (TAXI family
Y880_RS26420	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Y880_RS26475	COG1349	DNA-binding transcription factor activity
Y880_RS26535	COG1475	DNA binding
Y880_RS26540	COG1192	Involved in chromosome partitioning
Y880_RS26620	COG2010	Cytochrome c
Y880_RS26635	COG2818	Glycosylase
Y880_RS26650	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
Y880_RS26665	COG0569	domain protein
Y880_RS26685	COG1652	LysM domain
Y880_RS26720	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Y880_RS26740	COG3119	arylsulfatase activity
Y880_RS26745	COG0583	DNA-binding transcription factor activity
Y880_RS26780	COG3360	Dodecin
Y880_RS26825	COG3174	membrane
Y880_RS26870	COG0367	asparagine synthase
Y880_RS26890	COG0583	DNA-binding transcription factor activity
Y880_RS26905	COG1764	response to oxidative stress
Y880_RS26940	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
Y880_RS26945	COG0339	signal peptide processing
Y880_RS26950	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
Y880_RS26965	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Y880_RS26985	COG0631	protein serine/threonine phosphatase activity
Y880_RS27125	COG0659	secondary active sulfate transmembrane transporter activity
Y880_RS27140	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
Y880_RS27145	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Y880_RS27150	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
Y880_RS27190	COG2153	protein acetylation
Y880_RS27230	COG0583	DNA-binding transcription factor activity
Y880_RS27255	COG2824	Alkylphosphonate utilization operon protein PhnA
Y880_RS27285	COG0402	S-adenosylhomocysteine deaminase activity
Y880_RS27300	COG4603	Belongs to the binding-protein-dependent transport system permease family
Y880_RS27305	COG1079	Belongs to the binding-protein-dependent transport system permease family
Y880_RS27380	COG0583	DNA-binding transcription factor activity
Y880_RS27385	COG3485	protocatechuate 3,4-dioxygenase
Y880_RS27390	COG3485	protocatechuate 3,4-dioxygenase
Y880_RS27400	COG1414	Transcriptional regulator
Y880_RS27415	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Y880_RS27420	COG0583	DNA-binding transcription factor activity
Y880_RS27455	COG2233	PERMEase
Y880_RS27460	COG1309	transcriptional regulator
Y880_RS27495	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
Y880_RS27510	COG0835	chemotaxis
Y880_RS27520	COG0745	RESPONSE REGULATOR receiver
Y880_RS27530	COG0583	DNA-binding transcription factor activity
Y880_RS27535	COG1028	Short-chain dehydrogenase reductase Sdr
Y880_RS27545	COG1116	anion transmembrane transporter activity
Y880_RS27550	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Y880_RS27555	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Y880_RS27590	COG2175	clavaminate synthase activity
Y880_RS27700	COG1113	amino acid transport
Y880_RS27715	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Y880_RS27720	COG0235	Class ii aldolase
Y880_RS27725	COG1396	sequence-specific DNA binding
Y880_RS27730	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Y880_RS27735	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
Y880_RS27745	COG0477	Major facilitator Superfamily
Y880_RS27755	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Y880_RS27760	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Y880_RS27765	COG0583	DNA-binding transcription factor activity
Y880_RS27785	COG0673	inositol 2-dehydrogenase activity
Y880_RS27805	COG2271	Major facilitator Superfamily
Y880_RS27815	COG1309	transcriptional regulator
Y880_RS27830	COG0477	Major facilitator Superfamily
Y880_RS27850	COG2239	Acts as a magnesium transporter
Y880_RS27955	COG0745	RESPONSE REGULATOR receiver
Y880_RS27970	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Y880_RS27985	COG0583	DNA-binding transcription factor activity
Y880_RS28010	COG0501	Belongs to the peptidase M48B family
Y880_RS28030	COG4208	sulfate ABC transporter
Y880_RS28040	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Y880_RS28060	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Y880_RS28075	COG2199	diguanylate cyclase activity
Y880_RS28100	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Y880_RS28110	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
Y880_RS28115	COG0174	glutamine synthetase
Y880_RS28135	COG3842	ATPase activity
Y880_RS28140	COG1176	ABC-type spermidine putrescine transport system, permease component I
Y880_RS28145	COG1177	transmembrane transport
Y880_RS28200	COG0765	amino acid transport
Y880_RS28215	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Y880_RS28220	COG0277	FAD linked oxidase domain protein
Y880_RS28225	COG0179	Fumarylacetoacetate (FAA) hydrolase
Y880_RS28235	COG3111	PFAM Bacterial OB fold (BOF) protein
Y880_RS28245	COG0531	amino acid
Y880_RS28250	COG2182	Extracellular solute-binding protein
Y880_RS28255	COG1177	transmembrane transport
Y880_RS28265	COG3842	ATPase activity
Y880_RS28275	COG3204	pilus organization
Y880_RS28280	COG2234	aminopeptidase activity
Y880_RS28300	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Y880_RS28350	COG0730	response to heat
Y880_RS28385	COG0584	glycerophosphoryl diester phosphodiesterase
Y880_RS28405	COG0622	Phosphoesterase
Y880_RS28410	COG2233	PERMEase
Y880_RS28425	COG0693	protein deglycase activity
Y880_RS28460	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Y880_RS28470	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
Y880_RS28495	COG0429	hydrolase of the alpha beta-hydrolase fold
Y880_RS28505	COG0742	ribosomal rna small subunit methyltransferase
Y880_RS28510	COG0612	Peptidase, M16
Y880_RS28515	COG0612	Peptidase, M16
Y880_RS28520	COG0552	protein localization to endoplasmic reticulum
Y880_RS28525	COG2884	Cell division ATP-binding protein ftsE
Y880_RS28530	COG2177	Part of the ABC transporter FtsEX involved in
Y880_RS28550	COG2363	Small membrane protein
Y880_RS28600	COG2813	Specifically methylates the guanine in position
Y880_RS28600	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Y880_RS28610	COG1160	GTP binding
Y880_RS28615	COG1872	DUF167
Y880_RS28660	COG0626	cystathionine gamma-synthase activity
Y880_RS28730	COG0643	Histidine kinase
Y880_RS28730	COG0784	Response regulator, receiver
Y880_RS28730	COG2198	Histidine kinase
Y880_RS28760	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Y880_RS28780	COG3038	cytochrome b561
Y880_RS28810	COG0513	Belongs to the DEAD box helicase family
Y880_RS28820	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Y880_RS28825	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Y880_RS28850	COG1309	transcriptional regulator
Y880_RS28855	COG0402	S-adenosylhomocysteine deaminase activity
Y880_RS28875	COG0493	'glutamate synthase
Y880_RS28895	COG1953	Uracil, thiamine, allantoin
Y880_RS28910	COG1960	acyl-CoA dehydrogenase activity
Y880_RS28915	COG0583	DNA-binding transcription factor activity
Y880_RS28925	COG0306	phosphate transporter
Y880_RS28935	COG0330	HflC and HflK could
Y880_RS28945	COG1289	transmembrane transporter activity
Y880_RS28950	COG0513	Belongs to the DEAD box helicase family
Y880_RS28960	COG0189	ligase activity
Y880_RS28960	COG4067	protein conserved in archaea
Y880_RS28970	COG0477	Major facilitator Superfamily
Y880_RS28975	COG0542	response to heat
Y880_RS28985	COG0204	Acyl-transferase
Y880_RS28995	COG0745	RESPONSE REGULATOR receiver
Y880_RS29000	COG2205	protein histidine kinase activity
Y880_RS29005	COG4452	Inner membrane protein CreD
Y880_RS29040	COG4774	siderophore transport
Y880_RS29045	COG3712	iron ion homeostasis
Y880_RS29050	COG1595	DNA-templated transcription, initiation
Y880_RS29055	COG0625	glutathione transferase activity
Y880_RS29065	COG1309	transcriptional regulator
Y880_RS29070	COG1953	Uracil, thiamine, allantoin
Y880_RS29090	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Y880_RS29125	COG3585	molybdate ion transport
Y880_RS29125	COG2005	Transcriptional regulator
Y880_RS29130	COG5544	Lipoprotein
Y880_RS29155	COG0511	ligase activity, forming carbon-carbon bonds
Y880_RS29170	COG1984	allophanate hydrolase subunit 2
Y880_RS29180	COG3121	Chaperone
Y880_RS29195	COG1073	alpha beta
Y880_RS29195	COG2226	methyltransferase
Y880_RS29215	COG1960	acyl-CoA dehydrogenase activity
Y880_RS29220	COG1960	acyl-CoA dehydrogenase activity
Y880_RS29230	COG1960	acyl-CoA dehydrogenase activity
Y880_RS29325	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Y880_RS29330	COG0583	DNA-binding transcription factor activity
Y880_RS29335	COG2258	MOSC domain
Y880_RS29345	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Y880_RS29370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Y880_RS29380	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
Y880_RS29435	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Y880_RS29440	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
Y880_RS29450	COG3622	Belongs to the hyi family
Y880_RS29455	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Y880_RS29495	COG2081	HI0933 family
Y880_RS29500	COG1451	nucleotide metabolic process
Y880_RS29510	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Y880_RS29515	COG3152	Membrane
Y880_RS29520	COG1917	Cupin 2, conserved barrel domain protein
Y880_RS29520	COG4977	sequence-specific DNA binding
Y880_RS29525	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Y880_RS29620	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Y880_RS29640	COG2719	SpoVR family
Y880_RS29650	COG2766	serine protein kinase
Y880_RS29700	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
Y880_RS29715	COG2197	response regulator
Y880_RS29725	COG3842	ATPase activity
Y880_RS29735	COG1176	ABC-type spermidine putrescine transport system, permease component I
Y880_RS29745	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Y880_RS29770	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Y880_RS29855	COG3179	chitinase
Y880_RS29965	COG1765	OsmC-like protein
Y880_RS29980	COG0537	adenosine 5'-monophosphoramidase activity
Y880_RS30005	COG1981	membrane
Y880_RS30035	COG0739	heme binding