Y880_RS00010 SM00481 DNA polymerase alpha chain like domain Y880_RS00035 SM00965 Secretin and TonB N terminus short domain Y880_RS00095 SM00382 ATPases associated with a variety of cellular activities Y880_RS00175 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS00265 SM00363 S4 RNA-binding domain Y880_RS00310 SM00849 Metallo-beta-lactamase superfamily Y880_RS00350 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS00360 SM00986 Uracil DNA glycosylase superfamily Y880_RS00360 SM00987 UreE urease accessory protein, C-terminal domain Y880_RS00390 SM00448 cheY-homologous receiver domain Y880_RS00390 SM00862 Transcriptional regulatory protein, C terminal Y880_RS00395 SM00387 Histidine kinase-like ATPases Y880_RS00395 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS00445 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y880_RS00465 SM00358 Double-stranded RNA binding motif Y880_RS00465 SM00535 Ribonuclease III family Y880_RS00510 SM00382 ATPases associated with a variety of cellular activities Y880_RS00510 SM00464 Found in ATP-dependent protease La (LON) Y880_RS00515 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS00575 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS00605 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS00605 SM00895 Y880_RS00605 Y880_RS00615 SM00487 DEAD-like helicases superfamily Y880_RS00615 SM00490 helicase superfamily c-terminal domain Y880_RS00655 SM00644 Y880_RS00655 Y880_RS00720 SM00857 Resolvase, N terminal domain Y880_RS00775 SM00487 DEAD-like helicases superfamily Y880_RS00775 SM00490 helicase superfamily c-terminal domain Y880_RS00795 SM00481 DNA polymerase alpha chain like domain Y880_RS00820 SM00382 ATPases associated with a variety of cellular activities Y880_RS00825 SM00487 DEAD-like helicases superfamily Y880_RS00860 SM00327 von Willebrand factor (vWF) type A domain Y880_RS00870 SM00220 Serine/Threonine protein kinases, catalytic domain Y880_RS00900 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS00905 SM00849 Metallo-beta-lactamase superfamily Y880_RS00915 SM00563 Phosphate acyltransferases Y880_RS00985 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS00985 SM00091 PAS domain Y880_RS00985 SM00267 diguanylate cyclase Y880_RS00985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS01040 SM00450 Rhodanese Homology Domain Y880_RS01050 SM00382 ATPases associated with a variety of cellular activities Y880_RS01055 SM00052 Putative diguanylate phosphodiesterase Y880_RS01055 SM00091 PAS domain Y880_RS01055 SM00267 diguanylate cyclase Y880_RS01065 SM00829 Enoylreductase Y880_RS01075 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS01125 SM00091 PAS domain Y880_RS01125 SM00382 ATPases associated with a variety of cellular activities Y880_RS01210 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS01230 SM00382 ATPases associated with a variety of cellular activities Y880_RS01235 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS01285 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y880_RS01315 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS01350 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS01350 SM00924 MgtE intracellular N domain Y880_RS01365 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS01435 SM00073 Histidine Phosphotransfer domain Y880_RS01435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS01435 SM00387 Histidine kinase-like ATPases Y880_RS01435 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS01435 SM00448 cheY-homologous receiver domain Y880_RS01440 SM00448 cheY-homologous receiver domain Y880_RS01440 SM00862 Transcriptional regulatory protein, C terminal Y880_RS01445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS01445 SM00387 Histidine kinase-like ATPases Y880_RS01445 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS01465 SM00954 Region found in RelA / SpoT proteins Y880_RS01510 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS01615 SM00357 Cold shock protein domain Y880_RS01640 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y880_RS01645 SM00382 ATPases associated with a variety of cellular activities Y880_RS01775 SM00849 Metallo-beta-lactamase superfamily Y880_RS01825 SM01130 Y880_RS01825 Y880_RS01835 SM00849 Metallo-beta-lactamase superfamily Y880_RS01855 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS01870 SM00881 CoA binding domain Y880_RS01905 SM00822 Y880_RS01905 Y880_RS01945 SM00953 Y880_RS01945 Y880_RS01970 SM00769 Water Stress and Hypersensitive response Y880_RS02020 SM00491 Y880_RS02020 Y880_RS02150 SM00382 ATPases associated with a variety of cellular activities Y880_RS02155 SM00382 ATPases associated with a variety of cellular activities Y880_RS02230 SM00047 Lysozyme subfamily 2 Y880_RS02345 SM00382 ATPases associated with a variety of cellular activities Y880_RS02350 SM00091 PAS domain Y880_RS02350 SM00387 Histidine kinase-like ATPases Y880_RS02350 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS02355 SM00382 ATPases associated with a variety of cellular activities Y880_RS02355 SM00448 cheY-homologous receiver domain Y880_RS02380 SM00382 ATPases associated with a variety of cellular activities Y880_RS02395 SM00267 diguanylate cyclase Y880_RS02405 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS02410 SM00363 S4 RNA-binding domain Y880_RS02440 SM00382 ATPases associated with a variety of cellular activities Y880_RS02455 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS02475 SM00267 diguanylate cyclase Y880_RS02475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS02500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y880_RS02560 SM00421 helix_turn_helix, Lux Regulon Y880_RS02565 SM00829 Enoylreductase Y880_RS02590 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS02590 SM00866 Y880_RS02590 Y880_RS02645 SM01040 BRO family, N-terminal domain Y880_RS02650 SM01321 Y880_RS02650 Y880_RS02665 SM00448 cheY-homologous receiver domain Y880_RS02665 SM00862 Transcriptional regulatory protein, C terminal Y880_RS02670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS02670 SM00387 Histidine kinase-like ATPases Y880_RS02670 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS02675 SM00357 Cold shock protein domain Y880_RS02775 SM00448 cheY-homologous receiver domain Y880_RS02775 SM00862 Transcriptional regulatory protein, C terminal Y880_RS02780 SM00387 Histidine kinase-like ATPases Y880_RS02780 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS02785 SM00052 Putative diguanylate phosphodiesterase Y880_RS02785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS02785 SM00091 PAS domain Y880_RS02785 SM00267 diguanylate cyclase Y880_RS02790 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS02830 SM00731 SprT homologues. Y880_RS02840 SM00271 DnaJ molecular chaperone homology domain Y880_RS02865 SM00382 ATPases associated with a variety of cellular activities Y880_RS02930 SM00450 Rhodanese Homology Domain Y880_RS02995 SM00925 MltA specific insert domain Y880_RS03030 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS03065 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS03105 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS03105 SM00091 PAS domain Y880_RS03105 SM00387 Histidine kinase-like ATPases Y880_RS03105 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS03105 SM00448 cheY-homologous receiver domain Y880_RS03120 SM00382 ATPases associated with a variety of cellular activities Y880_RS03145 SM00235 Zinc-dependent metalloprotease Y880_RS03155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS03155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS03170 SM01130 Y880_RS03170 Y880_RS03180 SM00382 ATPases associated with a variety of cellular activities Y880_RS03200 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS03205 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS03215 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS03250 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS03250 SM00895 Y880_RS03250 Y880_RS03295 SM00855 Phosphoglycerate mutase family Y880_RS03320 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS03355 SM00450 Rhodanese Homology Domain Y880_RS03365 SM00341 Helicase and RNase D C-terminal Y880_RS03365 SM00474 3'-5' exonuclease Y880_RS03405 SM00965 Secretin and TonB N terminus short domain Y880_RS03555 SM01091 Transporter associated domain Y880_RS03585 SM00382 ATPases associated with a variety of cellular activities Y880_RS03585 SM00448 cheY-homologous receiver domain Y880_RS03590 SM00387 Histidine kinase-like ATPases Y880_RS03590 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS03595 SM00870 Y880_RS03595 Y880_RS03605 SM00382 ATPases associated with a variety of cellular activities Y880_RS03620 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS03645 SM00421 helix_turn_helix, Lux Regulon Y880_RS03705 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS03735 SM00965 Secretin and TonB N terminus short domain Y880_RS03840 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS03870 SM00382 ATPases associated with a variety of cellular activities Y880_RS03915 SM00387 Histidine kinase-like ATPases Y880_RS03915 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS03915 SM00448 cheY-homologous receiver domain Y880_RS03920 SM00421 helix_turn_helix, Lux Regulon Y880_RS03920 SM00448 cheY-homologous receiver domain Y880_RS03965 SM00878 Biotin carboxylase C-terminal domain Y880_RS04045 SM00849 Metallo-beta-lactamase superfamily Y880_RS04085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS04085 SM00091 PAS domain Y880_RS04085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS04090 SM01144 Y880_RS04090 Y880_RS04100 SM00382 ATPases associated with a variety of cellular activities Y880_RS04115 SM00831 Cation transporter/ATPase, N-terminus Y880_RS04120 SM00421 helix_turn_helix, Lux Regulon Y880_RS04135 SM00052 Putative diguanylate phosphodiesterase Y880_RS04135 SM00267 diguanylate cyclase Y880_RS04135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS04155 SM00448 cheY-homologous receiver domain Y880_RS04155 SM00862 Transcriptional regulatory protein, C terminal Y880_RS04160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS04160 SM00387 Histidine kinase-like ATPases Y880_RS04160 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS04235 SM00382 ATPases associated with a variety of cellular activities Y880_RS04235 SM00962 SRP54-type protein, GTPase domain Y880_RS04250 SM00448 cheY-homologous receiver domain Y880_RS04265 SM00448 cheY-homologous receiver domain Y880_RS04290 SM00260 Two component signalling adaptor domain Y880_RS04345 SM00382 ATPases associated with a variety of cellular activities Y880_RS04385 SM00028 Tetratricopeptide repeats Y880_RS04395 SM00421 helix_turn_helix, Lux Regulon Y880_RS04425 SM00420 helix_turn_helix, Deoxyribose operon repressor Y880_RS04425 SM01134 Y880_RS04425 Y880_RS04500 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS04575 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS04575 SM00895 Y880_RS04575 Y880_RS04590 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y880_RS04595 SM01092 CO dehydrogenase flavoprotein C-terminal domain Y880_RS04605 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS04605 SM00895 Y880_RS04605 Y880_RS04610 SM00968 SMC proteins Flexible Hinge Domain Y880_RS04615 SM00771 ZipA, C-terminal domain (FtsZ-binding) Y880_RS04620 SM00292 breast cancer carboxy-terminal domain Y880_RS04620 SM00532 Ligase N family Y880_RS04645 SM00857 Resolvase, N terminal domain Y880_RS04650 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS04685 SM00493 Y880_RS04685 Y880_RS04700 SM00822 Y880_RS04700 Y880_RS04735 SM00100 Cyclic nucleotide-monophosphate binding domain Y880_RS04735 SM00419 helix_turn_helix, cAMP Regulatory protein Y880_RS04745 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS04830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS04855 SM01230 Y880_RS04855 Y880_RS04910 SM00479 Y880_RS04910 Y880_RS04965 SM00861 Transketolase, pyrimidine binding domain Y880_RS04985 SM00881 CoA binding domain Y880_RS05020 SM00387 Histidine kinase-like ATPases Y880_RS05035 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS05045 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y880_RS05055 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS05080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS05080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS05085 SM00825 Beta-ketoacyl synthase Y880_RS05095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS05095 SM00387 Histidine kinase-like ATPases Y880_RS05095 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS05095 SM00448 cheY-homologous receiver domain Y880_RS05120 SM00855 Phosphoglycerate mutase family Y880_RS05135 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS05180 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS05180 SM00895 Y880_RS05180 Y880_RS05195 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS05230 SM00448 cheY-homologous receiver domain Y880_RS05230 SM00862 Transcriptional regulatory protein, C terminal Y880_RS05260 SM00450 Rhodanese Homology Domain Y880_RS05270 SM00903 Flavin reductase like domain Y880_RS05280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS05280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS05280 SM01358 Y880_RS05280 Y880_RS05295 SM00829 Enoylreductase Y880_RS05320 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS05370 SM00382 ATPases associated with a variety of cellular activities Y880_RS05370 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS05375 SM00382 ATPases associated with a variety of cellular activities Y880_RS05410 SM00331 Sigma factor PP2C-like phosphatases Y880_RS05410 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Y880_RS05415 SM00220 Serine/Threonine protein kinases, catalytic domain Y880_RS05435 SM00463 Small MutS-related domain Y880_RS05475 SM01007 Class II Aldolase and Adducin N-terminal domain Y880_RS05495 SM00478 endonuclease III Y880_RS05495 SM01009 AlkA N-terminal domain Y880_RS05555 SM00382 ATPases associated with a variety of cellular activities Y880_RS05635 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS05700 SM01217 Y880_RS05700 Y880_RS05705 SM00052 Putative diguanylate phosphodiesterase Y880_RS05705 SM00267 diguanylate cyclase Y880_RS05735 SM00460 Transglutaminase/protease-like homologues Y880_RS05805 SM00506 Appr-1"-p processing enzyme Y880_RS05875 SM00421 helix_turn_helix, Lux Regulon Y880_RS05880 SM00421 helix_turn_helix, Lux Regulon Y880_RS05985 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS06000 SM00220 Serine/Threonine protein kinases, catalytic domain Y880_RS06000 SM00331 Sigma factor PP2C-like phosphatases Y880_RS06000 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Y880_RS06015 SM00448 cheY-homologous receiver domain Y880_RS06015 SM01012 Y880_RS06015 Y880_RS06070 SM00840 Y880_RS06070 Y880_RS06110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS06110 SM00387 Histidine kinase-like ATPases Y880_RS06110 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS06115 SM00448 cheY-homologous receiver domain Y880_RS06115 SM00862 Transcriptional regulatory protein, C terminal Y880_RS06135 SM00382 ATPases associated with a variety of cellular activities Y880_RS06135 SM00994 ClpX C4-type zinc finger Y880_RS06135 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS06140 SM00382 ATPases associated with a variety of cellular activities Y880_RS06140 SM00464 Found in ATP-dependent protease La (LON) Y880_RS06145 SM00411 bacterial (prokaryotic) histone like domain Y880_RS06165 SM00382 ATPases associated with a variety of cellular activities Y880_RS06190 SM00257 Lysin motif Y880_RS06195 SM00849 Metallo-beta-lactamase superfamily Y880_RS06210 SM00479 Y880_RS06210 Y880_RS06265 SM00822 Y880_RS06265 Y880_RS06285 SM00855 Phosphoglycerate mutase family Y880_RS06295 SM00829 Enoylreductase Y880_RS06355 SM01018 B12 binding domain Y880_RS06400 SM00267 diguanylate cyclase Y880_RS06415 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS06450 SM00382 ATPases associated with a variety of cellular activities Y880_RS06470 SM00990 Y880_RS06470 Y880_RS06475 SM00491 Y880_RS06475 Y880_RS06495 SM00823 Phosphopantetheine attachment site Y880_RS06530 SM00382 ATPases associated with a variety of cellular activities Y880_RS06545 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS06550 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y880_RS06580 SM00486 DNA polymerase type-B family Y880_RS06640 SM00421 helix_turn_helix, Lux Regulon Y880_RS06710 SM00965 Secretin and TonB N terminus short domain Y880_RS06815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS06815 SM00091 PAS domain Y880_RS06815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS06825 SM01092 CO dehydrogenase flavoprotein C-terminal domain Y880_RS06830 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y880_RS06880 SM00382 ATPases associated with a variety of cellular activities Y880_RS06900 SM00354 helix_turn _helix lactose operon repressor Y880_RS06975 SM00382 ATPases associated with a variety of cellular activities Y880_RS07035 SM00897 FIST N domain Y880_RS07035 SM01204 Y880_RS07035 Y880_RS07040 SM00091 PAS domain Y880_RS07040 SM00387 Histidine kinase-like ATPases Y880_RS07040 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS07040 SM00448 cheY-homologous receiver domain Y880_RS07050 SM00421 helix_turn_helix, Lux Regulon Y880_RS07050 SM00448 cheY-homologous receiver domain Y880_RS07055 SM00387 Histidine kinase-like ATPases Y880_RS07060 SM00421 helix_turn_helix, Lux Regulon Y880_RS07060 SM00448 cheY-homologous receiver domain Y880_RS07070 SM00564 beta-propeller repeat Y880_RS07100 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS07115 SM00387 Histidine kinase-like ATPases Y880_RS07115 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS07115 SM00448 cheY-homologous receiver domain Y880_RS07150 SM00882 Coenzyme A transferase Y880_RS07155 SM00882 Coenzyme A transferase Y880_RS07180 SM00091 PAS domain Y880_RS07180 SM00382 ATPases associated with a variety of cellular activities Y880_RS07205 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS07235 SM00422 helix_turn_helix, mercury resistance Y880_RS07270 SM00984 UDP binding domain Y880_RS07300 SM00344 helix_turn_helix ASNC type Y880_RS07320 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS07395 SM01234 Y880_RS07395 Y880_RS07405 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS07430 SM01116 Y880_RS07430 Y880_RS07435 SM00947 Carbonic anhydrase Y880_RS07455 SM00965 Secretin and TonB N terminus short domain Y880_RS07530 SM00838 Elongation factor G C-terminus Y880_RS07530 SM00889 Elongation factor G, domain IV Y880_RS07535 SM00052 Putative diguanylate phosphodiesterase Y880_RS07535 SM00091 PAS domain Y880_RS07535 SM00267 diguanylate cyclase Y880_RS07590 SM00344 helix_turn_helix ASNC type Y880_RS07660 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS07680 SM00822 Y880_RS07680 Y880_RS07685 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS07700 SM00450 Rhodanese Homology Domain Y880_RS07740 SM00796 Allophanate hydrolase subunit 1 Y880_RS07830 SM00470 ParB-like nuclease domain Y880_RS07870 SM00052 Putative diguanylate phosphodiesterase Y880_RS07920 SM00822 Y880_RS07920 Y880_RS07950 SM01060 Y880_RS07950 Y880_RS07970 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Y880_RS07975 SM00642 Alpha-amylase domain Y880_RS07980 SM00642 Alpha-amylase domain Y880_RS07985 SM00642 Alpha-amylase domain Y880_RS07995 SM00155 Phospholipase D. Active site motifs. Y880_RS08010 SM00829 Enoylreductase Y880_RS08015 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS08035 SM00642 Alpha-amylase domain Y880_RS08045 SM00642 Alpha-amylase domain Y880_RS08120 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS08120 SM00091 PAS domain Y880_RS08120 SM00387 Histidine kinase-like ATPases Y880_RS08120 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS08120 SM00448 cheY-homologous receiver domain Y880_RS08140 SM01236 Y880_RS08140 Y880_RS08195 SM00829 Enoylreductase Y880_RS08210 SM00052 Putative diguanylate phosphodiesterase Y880_RS08230 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS08230 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y880_RS08285 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y880_RS08320 SM00091 PAS domain Y880_RS08320 SM00382 ATPases associated with a variety of cellular activities Y880_RS08565 SM00344 helix_turn_helix ASNC type Y880_RS08575 SM00861 Transketolase, pyrimidine binding domain Y880_RS08635 SM00354 helix_turn _helix lactose operon repressor Y880_RS08705 SM00422 helix_turn_helix, mercury resistance Y880_RS08715 SM00829 Enoylreductase Y880_RS08720 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS08725 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y880_RS08735 SM00226 Low molecular weight phosphatase family Y880_RS08745 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS08815 SM00382 ATPases associated with a variety of cellular activities Y880_RS08840 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS08840 SM00866 Y880_RS08840 Y880_RS08845 SM00060 Fibronectin type 3 domain Y880_RS08845 SM00495 Chitin-binding domain type 3 Y880_RS08885 SM00382 ATPases associated with a variety of cellular activities Y880_RS08905 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS08940 SM00354 helix_turn _helix lactose operon repressor Y880_RS08990 SM00382 ATPases associated with a variety of cellular activities Y880_RS09005 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS09030 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS09050 SM00382 ATPases associated with a variety of cellular activities Y880_RS09095 SM00382 ATPases associated with a variety of cellular activities Y880_RS09095 SM00930 Y880_RS09095 Y880_RS09115 SM00382 ATPases associated with a variety of cellular activities Y880_RS09140 SM00382 ATPases associated with a variety of cellular activities Y880_RS09200 SM00382 ATPases associated with a variety of cellular activities Y880_RS09230 SM00421 helix_turn_helix, Lux Regulon Y880_RS09230 SM00448 cheY-homologous receiver domain Y880_RS09240 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y880_RS09305 SM00382 ATPases associated with a variety of cellular activities Y880_RS09345 SM00965 Secretin and TonB N terminus short domain Y880_RS09410 SM00923 MbtH-like protein Y880_RS09465 SM01040 BRO family, N-terminal domain Y880_RS09605 SM00382 ATPases associated with a variety of cellular activities Y880_RS09735 SM00448 cheY-homologous receiver domain Y880_RS09735 SM00862 Transcriptional regulatory protein, C terminal Y880_RS09740 SM00387 Histidine kinase-like ATPases Y880_RS09740 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS09780 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS09785 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS09795 SM00829 Enoylreductase Y880_RS09830 SM00248 ankyrin repeats Y880_RS09850 SM00364 Leucine-rich repeats, bacterial type Y880_RS09850 SM00369 Leucine-rich repeats, typical (most populated) subfamily Y880_RS09885 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y880_RS09900 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS09945 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS09965 SM00448 cheY-homologous receiver domain Y880_RS09965 SM00862 Transcriptional regulatory protein, C terminal Y880_RS09970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS09970 SM00387 Histidine kinase-like ATPases Y880_RS09970 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS10050 SM00563 Phosphate acyltransferases Y880_RS10150 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS10180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS10180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS10215 SM00052 Putative diguanylate phosphodiesterase Y880_RS10215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y880_RS10215 SM00267 diguanylate cyclase Y880_RS10240 SM00387 Histidine kinase-like ATPases Y880_RS10245 SM00448 cheY-homologous receiver domain Y880_RS10250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS10250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS10270 SM00344 helix_turn_helix ASNC type Y880_RS10300 SM00945 ProQ/FINO family Y880_RS10305 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS10305 SM00387 Histidine kinase-like ATPases Y880_RS10305 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS10305 SM00448 cheY-homologous receiver domain Y880_RS10330 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y880_RS10330 SM00465 GIY-YIG type nucleases (URI domain) Y880_RS10335 SM00421 helix_turn_helix, Lux Regulon Y880_RS10335 SM00448 cheY-homologous receiver domain Y880_RS10350 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS10360 SM00965 Secretin and TonB N terminus short domain Y880_RS10365 SM00421 helix_turn_helix, Lux Regulon Y880_RS10380 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS10385 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS10390 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS10405 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS10425 SM00450 Rhodanese Homology Domain Y880_RS10480 SM00382 ATPases associated with a variety of cellular activities Y880_RS10490 SM00843 Y880_RS10490 Y880_RS10510 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS10515 SM00382 ATPases associated with a variety of cellular activities Y880_RS10515 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS10525 SM00357 Cold shock protein domain Y880_RS10530 SM01329 Y880_RS10530 Y880_RS10565 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Y880_RS10625 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y880_RS10630 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS10630 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y880_RS10685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS10685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS10685 SM01049 Y880_RS10685 Y880_RS10695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS10695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS10705 SM00387 Histidine kinase-like ATPases Y880_RS10710 SM00448 cheY-homologous receiver domain Y880_RS10710 SM00862 Transcriptional regulatory protein, C terminal Y880_RS10755 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y880_RS10755 SM00382 ATPases associated with a variety of cellular activities Y880_RS10815 SM00382 ATPases associated with a variety of cellular activities Y880_RS10830 SM00829 Enoylreductase Y880_RS10865 SM00448 cheY-homologous receiver domain Y880_RS10865 SM00862 Transcriptional regulatory protein, C terminal Y880_RS10870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS10870 SM00387 Histidine kinase-like ATPases Y880_RS10870 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS10910 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS10955 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS10970 SM00382 ATPases associated with a variety of cellular activities Y880_RS11010 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS11030 SM00422 helix_turn_helix, mercury resistance Y880_RS11130 SM00487 DEAD-like helicases superfamily Y880_RS11140 SM00422 helix_turn_helix, mercury resistance Y880_RS11145 SM00411 bacterial (prokaryotic) histone like domain Y880_RS11150 SM00873 B3/4 domain Y880_RS11150 SM00874 tRNA synthetase B5 domain Y880_RS11150 SM00896 Ferredoxin-fold anticodon binding domain Y880_RS11175 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y880_RS11225 SM00318 Staphylococcal nuclease homologues Y880_RS11370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y880_RS11370 SM00267 diguanylate cyclase Y880_RS11430 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS11460 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS11475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS11490 SM00710 Parallel beta-helix repeats Y880_RS11530 SM00331 Sigma factor PP2C-like phosphatases Y880_RS11530 SM00448 cheY-homologous receiver domain Y880_RS11550 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS11550 SM00866 Y880_RS11550 Y880_RS11585 SM00448 cheY-homologous receiver domain Y880_RS11585 SM00862 Transcriptional regulatory protein, C terminal Y880_RS11590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS11590 SM00387 Histidine kinase-like ATPases Y880_RS11590 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS11600 SM00382 ATPases associated with a variety of cellular activities Y880_RS11630 SM00100 Cyclic nucleotide-monophosphate binding domain Y880_RS11730 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y880_RS11730 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y880_RS11730 SM00493 Y880_RS11730 Y880_RS11820 SM00487 DEAD-like helicases superfamily Y880_RS11945 SM00953 Y880_RS11945 Y880_RS11965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS11975 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS12015 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS12030 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS12085 SM00387 Histidine kinase-like ATPases Y880_RS12085 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS12085 SM00448 cheY-homologous receiver domain Y880_RS12090 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS12210 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS12220 SM00841 Elongation factor P, C-terminal Y880_RS12220 SM01185 Y880_RS12220 Y880_RS12255 SM00382 ATPases associated with a variety of cellular activities Y880_RS12320 SM00267 diguanylate cyclase Y880_RS12335 SM00460 Transglutaminase/protease-like homologues Y880_RS12350 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Y880_RS12380 SM00387 Histidine kinase-like ATPases Y880_RS12405 SM00822 Y880_RS12405 Y880_RS12455 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS12465 SM00421 helix_turn_helix, Lux Regulon Y880_RS12465 SM00448 cheY-homologous receiver domain Y880_RS12480 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS12535 SM00382 ATPases associated with a variety of cellular activities Y880_RS12550 SM00849 Metallo-beta-lactamase superfamily Y880_RS12560 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS12565 SM00822 Y880_RS12565 Y880_RS12590 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS12605 SM00382 ATPases associated with a variety of cellular activities Y880_RS12710 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y880_RS12745 SM00893 Electron transfer flavoprotein domain Y880_RS12750 SM00893 Electron transfer flavoprotein domain Y880_RS12770 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS12815 SM00825 Beta-ketoacyl synthase Y880_RS12820 SM00823 Phosphopantetheine attachment site Y880_RS12825 SM00822 Y880_RS12825 Y880_RS12830 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Y880_RS12865 SM00363 S4 RNA-binding domain Y880_RS12885 SM00226 Low molecular weight phosphatase family Y880_RS12930 SM00382 ATPases associated with a variety of cellular activities Y880_RS12985 SM00900 Y880_RS12985 Y880_RS13005 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y880_RS13010 SM00487 DEAD-like helicases superfamily Y880_RS13010 SM00490 helicase superfamily c-terminal domain Y880_RS13010 SM00982 Y880_RS13010 Y880_RS13010 SM01058 CarD-like/TRCF domain Y880_RS13055 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y880_RS13055 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y880_RS13055 SM00493 Y880_RS13055 Y880_RS13100 SM00382 ATPases associated with a variety of cellular activities Y880_RS13140 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS13145 SM00852 Probable molybdopterin binding domain Y880_RS13150 SM00852 Probable molybdopterin binding domain Y880_RS13195 SM00849 Metallo-beta-lactamase superfamily Y880_RS13225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y880_RS13230 SM00073 Histidine Phosphotransfer domain Y880_RS13230 SM00387 Histidine kinase-like ATPases Y880_RS13230 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS13230 SM00448 cheY-homologous receiver domain Y880_RS13235 SM00421 helix_turn_helix, Lux Regulon Y880_RS13235 SM00448 cheY-homologous receiver domain Y880_RS13250 SM00981 Y880_RS13250 Y880_RS13295 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS13365 SM00327 von Willebrand factor (vWF) type A domain Y880_RS13390 SM00448 cheY-homologous receiver domain Y880_RS13390 SM00862 Transcriptional regulatory protein, C terminal Y880_RS13395 SM00387 Histidine kinase-like ATPases Y880_RS13395 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS13480 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS13605 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y880_RS13610 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y880_RS13615 SM01329 Y880_RS13615 Y880_RS13735 SM00487 DEAD-like helicases superfamily Y880_RS13735 SM00490 helicase superfamily c-terminal domain Y880_RS13750 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y880_RS13800 SM00984 UDP binding domain Y880_RS13815 SM00411 bacterial (prokaryotic) histone like domain Y880_RS13820 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS13840 SM00830 Chorismate mutase type II Y880_RS13850 SM00434 DNA Topoisomerase IV Y880_RS13880 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS13895 SM00267 diguanylate cyclase Y880_RS13950 SM00382 ATPases associated with a variety of cellular activities Y880_RS13975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS13975 SM00387 Histidine kinase-like ATPases Y880_RS13975 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS13980 SM00448 cheY-homologous receiver domain Y880_RS13980 SM00862 Transcriptional regulatory protein, C terminal Y880_RS13995 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y880_RS14045 SM00448 cheY-homologous receiver domain Y880_RS14045 SM00862 Transcriptional regulatory protein, C terminal Y880_RS14055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS14055 SM00387 Histidine kinase-like ATPases Y880_RS14055 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS14085 SM00382 ATPases associated with a variety of cellular activities Y880_RS14100 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS14110 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Y880_RS14125 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS14165 SM00382 ATPases associated with a variety of cellular activities Y880_RS14185 SM00479 Y880_RS14185 Y880_RS14190 SM00100 Cyclic nucleotide-monophosphate binding domain Y880_RS14270 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS14270 SM00866 Y880_RS14270 Y880_RS14295 SM00382 ATPases associated with a variety of cellular activities Y880_RS14305 SM00829 Enoylreductase Y880_RS14310 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y880_RS14310 SM00245 tail specific protease Y880_RS14315 SM00052 Putative diguanylate phosphodiesterase Y880_RS14315 SM00267 diguanylate cyclase Y880_RS14320 SM00671 Sel1-like repeats. Y880_RS14330 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS14375 SM00357 Cold shock protein domain Y880_RS14380 SM00563 Phosphate acyltransferases Y880_RS14390 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS14400 SM00387 Histidine kinase-like ATPases Y880_RS14400 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS14400 SM00448 cheY-homologous receiver domain Y880_RS14430 SM00822 Y880_RS14430 Y880_RS14490 SM00248 ankyrin repeats Y880_RS14535 SM00098 Alkaline phosphatase homologues Y880_RS14540 SM00382 ATPases associated with a variety of cellular activities Y880_RS14540 SM00487 DEAD-like helicases superfamily Y880_RS14540 SM00490 helicase superfamily c-terminal domain Y880_RS14540 SM00847 Helicase associated domain (HA2) Add an annotation Y880_RS14610 SM00487 DEAD-like helicases superfamily Y880_RS14610 SM00490 helicase superfamily c-terminal domain Y880_RS14630 SM00052 Putative diguanylate phosphodiesterase Y880_RS14630 SM00267 diguanylate cyclase Y880_RS14640 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS14685 SM00422 helix_turn_helix, mercury resistance Y880_RS14710 SM00823 Phosphopantetheine attachment site Y880_RS14790 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS14800 SM00267 diguanylate cyclase Y880_RS14805 SM00341 Helicase and RNase D C-terminal Y880_RS14805 SM00487 DEAD-like helicases superfamily Y880_RS14805 SM00490 helicase superfamily c-terminal domain Y880_RS14805 SM00956 Y880_RS14805 Y880_RS14815 SM00331 Sigma factor PP2C-like phosphatases Y880_RS14815 SM00448 cheY-homologous receiver domain Y880_RS14825 SM00138 Methyltransferase, chemotaxis proteins Y880_RS14830 SM00260 Two component signalling adaptor domain Y880_RS14830 SM00448 cheY-homologous receiver domain Y880_RS14835 SM00858 Y880_RS14835 Y880_RS14865 SM01230 Y880_RS14865 Y880_RS14900 SM01012 Y880_RS14900 Y880_RS14910 SM00382 ATPases associated with a variety of cellular activities Y880_RS14910 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS14925 SM00567 E-Z type HEAT repeats Y880_RS14965 SM00849 Metallo-beta-lactamase superfamily Y880_RS14980 SM00382 ATPases associated with a variety of cellular activities Y880_RS14985 SM00382 ATPases associated with a variety of cellular activities Y880_RS15010 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS15010 SM00866 Y880_RS15010 Y880_RS15025 SM00382 ATPases associated with a variety of cellular activities Y880_RS15060 SM00900 Y880_RS15060 Y880_RS15075 SM00382 ATPases associated with a variety of cellular activities Y880_RS15150 SM00965 Secretin and TonB N terminus short domain Y880_RS15195 SM00861 Transketolase, pyrimidine binding domain Y880_RS15205 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y880_RS15230 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS15250 SM00822 Y880_RS15250 Y880_RS15265 SM01007 Class II Aldolase and Adducin N-terminal domain Y880_RS15305 SM00905 Dihydroneopterin aldolase Y880_RS15325 SM00382 ATPases associated with a variety of cellular activities Y880_RS15340 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS15350 SM00382 ATPases associated with a variety of cellular activities Y880_RS15360 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS15410 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS15430 SM00387 Histidine kinase-like ATPases Y880_RS15430 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS15430 SM00448 cheY-homologous receiver domain Y880_RS15450 SM00487 DEAD-like helicases superfamily Y880_RS15450 SM00490 helicase superfamily c-terminal domain Y880_RS15475 SM00919 Malic enzyme, NAD binding domain Y880_RS15475 SM01274 Y880_RS15475 Y880_RS15500 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS15510 SM00421 helix_turn_helix, Lux Regulon Y880_RS15580 SM00900 Y880_RS15580 Y880_RS15590 SM00478 endonuclease III Y880_RS15590 SM00525 Y880_RS15590 Y880_RS15655 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS15670 SM00822 Y880_RS15670 Y880_RS15685 SM00382 ATPases associated with a variety of cellular activities Y880_RS15695 SM00998 Adenylosuccinate lyase C-terminus Y880_RS15700 SM00998 Adenylosuccinate lyase C-terminus Y880_RS15705 SM01236 Y880_RS15705 Y880_RS15710 SM01236 Y880_RS15710 Y880_RS15755 SM00479 Y880_RS15755 Y880_RS15785 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS15790 SM00869 Autotransporter beta-domain Y880_RS15805 SM00382 ATPases associated with a variety of cellular activities Y880_RS15815 SM00984 UDP binding domain Y880_RS15915 SM00984 UDP binding domain Y880_RS15935 SM00354 helix_turn _helix lactose operon repressor Y880_RS15960 SM00829 Enoylreductase Y880_RS15980 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS16060 SM00420 helix_turn_helix, Deoxyribose operon repressor Y880_RS16060 SM01134 Y880_RS16060 Y880_RS16130 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS16145 SM00421 helix_turn_helix, Lux Regulon Y880_RS16170 SM00421 helix_turn_helix, Lux Regulon Y880_RS16170 SM00448 cheY-homologous receiver domain Y880_RS16180 SM01144 Y880_RS16180 Y880_RS16185 SM00382 ATPases associated with a variety of cellular activities Y880_RS16220 SM00849 Metallo-beta-lactamase superfamily Y880_RS16220 SM01027 Beta-Casp domain Y880_RS16235 SM00382 ATPases associated with a variety of cellular activities Y880_RS16255 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Y880_RS16255 SM00534 ATPase domain of DNA mismatch repair MUTS family Y880_RS16270 SM00257 Lysin motif Y880_RS16300 SM00829 Enoylreductase Y880_RS16330 SM01192 Y880_RS16330 Y880_RS16330 SM01193 Y880_RS16330 Y880_RS16345 SM00977 TilS substrate C-terminal domain Y880_RS16355 SM00481 DNA polymerase alpha chain like domain Y880_RS16390 SM00935 Outer membrane protein (OmpH-like) Y880_RS16400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y880_RS16445 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y880_RS16515 SM00382 ATPases associated with a variety of cellular activities Y880_RS16520 SM00563 Phosphate acyltransferases Y880_RS16600 SM00422 helix_turn_helix, mercury resistance Y880_RS16620 SM00506 Appr-1"-p processing enzyme Y880_RS16640 SM01154 Y880_RS16640 Y880_RS16665 SM00267 diguanylate cyclase Y880_RS16665 SM00448 cheY-homologous receiver domain Y880_RS16670 SM00448 cheY-homologous receiver domain Y880_RS16675 SM00073 Histidine Phosphotransfer domain Y880_RS16675 SM00260 Two component signalling adaptor domain Y880_RS16675 SM00387 Histidine kinase-like ATPases Y880_RS16675 SM00448 cheY-homologous receiver domain Y880_RS16680 SM00260 Two component signalling adaptor domain Y880_RS16685 SM00138 Methyltransferase, chemotaxis proteins Y880_RS16690 SM00260 Two component signalling adaptor domain Y880_RS16695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS16695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS16725 SM00421 helix_turn_helix, Lux Regulon Y880_RS16725 SM00448 cheY-homologous receiver domain Y880_RS16785 SM01322 Y880_RS16785 Y880_RS16890 SM00382 ATPases associated with a variety of cellular activities Y880_RS16890 SM00962 SRP54-type protein, GTPase domain Y880_RS16890 SM00963 SRP54-type protein, helical bundle domain Y880_RS16900 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS16900 SM01091 Transporter associated domain Y880_RS16950 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS16950 SM00866 Y880_RS16950 Y880_RS16985 SM01211 Y880_RS16985 Y880_RS16990 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS17020 SM00829 Enoylreductase Y880_RS17025 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS17050 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS17050 SM01240 Y880_RS17050 Y880_RS17055 SM00421 helix_turn_helix, Lux Regulon Y880_RS17115 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS17165 SM00917 LeuA allosteric (dimerisation) domain Y880_RS17205 SM00564 beta-propeller repeat Y880_RS17230 SM00028 Tetratricopeptide repeats Y880_RS17240 SM00562 Y880_RS17240 Y880_RS17260 SM00271 DnaJ molecular chaperone homology domain Y880_RS17315 SM01323 Y880_RS17315 Y880_RS17335 SM00052 Putative diguanylate phosphodiesterase Y880_RS17360 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS17400 SM00382 ATPases associated with a variety of cellular activities Y880_RS17505 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS17525 SM00487 DEAD-like helicases superfamily Y880_RS17525 SM00490 helicase superfamily c-terminal domain Y880_RS17545 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS17560 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS17585 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y880_RS17600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS17600 SM00387 Histidine kinase-like ATPases Y880_RS17605 SM00421 helix_turn_helix, Lux Regulon Y880_RS17605 SM00448 cheY-homologous receiver domain Y880_RS17675 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS17675 SM00382 ATPases associated with a variety of cellular activities Y880_RS17715 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS17730 SM00965 Secretin and TonB N terminus short domain Y880_RS17795 SM00852 Probable molybdopterin binding domain Y880_RS17800 SM00852 Probable molybdopterin binding domain Y880_RS17820 SM00670 Large family of predicted nucleotide-binding domains Y880_RS17870 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS17895 SM00382 ATPases associated with a variety of cellular activities Y880_RS17920 SM00382 ATPases associated with a variety of cellular activities Y880_RS17925 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS17935 SM00411 bacterial (prokaryotic) histone like domain Y880_RS17970 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS17970 SM00091 PAS domain Y880_RS17970 SM00387 Histidine kinase-like ATPases Y880_RS17970 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS17970 SM00448 cheY-homologous receiver domain Y880_RS17975 SM00052 Putative diguanylate phosphodiesterase Y880_RS17975 SM00448 cheY-homologous receiver domain Y880_RS17980 SM00421 helix_turn_helix, Lux Regulon Y880_RS17980 SM00448 cheY-homologous receiver domain Y880_RS17995 SM00487 DEAD-like helicases superfamily Y880_RS17995 SM00490 helicase superfamily c-terminal domain Y880_RS18030 SM00822 Y880_RS18030 Y880_RS18070 SM00344 helix_turn_helix ASNC type Y880_RS18120 SM00387 Histidine kinase-like ATPases Y880_RS18120 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS18120 SM00448 cheY-homologous receiver domain Y880_RS18140 SM00671 Sel1-like repeats. Y880_RS18150 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS18165 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS18165 SM01091 Transporter associated domain Y880_RS18225 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS18240 SM00936 Penicillin-binding protein 5, C-terminal domain Y880_RS18300 SM00014 Acid phosphatase homologues Y880_RS18305 SM00464 Found in ATP-dependent protease La (LON) Y880_RS18325 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. Y880_RS18400 SM00448 cheY-homologous receiver domain Y880_RS18400 SM00862 Transcriptional regulatory protein, C terminal Y880_RS18420 SM00091 PAS domain Y880_RS18420 SM00387 Histidine kinase-like ATPases Y880_RS18420 SM01080 Y880_RS18420 Y880_RS18425 SM00382 ATPases associated with a variety of cellular activities Y880_RS18445 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y880_RS18460 SM00861 Transketolase, pyrimidine binding domain Y880_RS18560 SM00382 ATPases associated with a variety of cellular activities Y880_RS18595 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS18615 SM00421 helix_turn_helix, Lux Regulon Y880_RS18630 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS18635 SM00823 Phosphopantetheine attachment site Y880_RS18645 SM00421 helix_turn_helix, Lux Regulon Y880_RS18645 SM00448 cheY-homologous receiver domain Y880_RS18655 SM00912 haemagglutination activity domain Y880_RS18690 SM00822 Y880_RS18690 Y880_RS18705 SM00903 Flavin reductase like domain Y880_RS18715 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS18750 SM00448 cheY-homologous receiver domain Y880_RS18750 SM00862 Transcriptional regulatory protein, C terminal Y880_RS18755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS18755 SM00387 Histidine kinase-like ATPases Y880_RS18755 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS18785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y880_RS18810 SM00073 Histidine Phosphotransfer domain Y880_RS18810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS18810 SM00091 PAS domain Y880_RS18810 SM00387 Histidine kinase-like ATPases Y880_RS18810 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS18810 SM00448 cheY-homologous receiver domain Y880_RS18810 SM01079 Y880_RS18810 Y880_RS18835 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y880_RS18835 SM00387 Histidine kinase-like ATPases Y880_RS18835 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS18910 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS18925 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS18970 SM00382 ATPases associated with a variety of cellular activities Y880_RS18995 SM00822 Y880_RS18995 Y880_RS19010 SM00861 Transketolase, pyrimidine binding domain Y880_RS19020 SM00829 Enoylreductase Y880_RS19025 SM00287 Bacterial SH3 domain homologues Y880_RS19040 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS19045 SM00382 ATPases associated with a variety of cellular activities Y880_RS19065 SM00822 Y880_RS19065 Y880_RS19085 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS19100 SM00965 Secretin and TonB N terminus short domain Y880_RS19180 SM00873 B3/4 domain Y880_RS19195 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS19200 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS19200 SM00895 Y880_RS19200 Y880_RS19215 SM01130 Y880_RS19215 Y880_RS19235 SM00382 ATPases associated with a variety of cellular activities Y880_RS19250 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS19255 SM00421 helix_turn_helix, Lux Regulon Y880_RS19255 SM00448 cheY-homologous receiver domain Y880_RS19275 SM00849 Metallo-beta-lactamase superfamily Y880_RS19375 SM00382 ATPases associated with a variety of cellular activities Y880_RS19395 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS19405 SM00824 Thioesterase Y880_RS19410 SM00830 Chorismate mutase type II Y880_RS19440 SM01060 Y880_RS19440 Y880_RS19450 SM00662 RNA polymerases D Y880_RS19455 SM00363 S4 RNA-binding domain Y880_RS19455 SM01390 Y880_RS19455 Y880_RS19520 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y880_RS19525 SM01374 Y880_RS19525 Y880_RS19545 SM00322 K homology RNA-binding domain Y880_RS19560 SM01382 Y880_RS19560 Y880_RS19560 SM01383 Y880_RS19560 Y880_RS19580 SM01403 Y880_RS19580 Y880_RS19585 SM00838 Elongation factor G C-terminus Y880_RS19585 SM00889 Elongation factor G, domain IV Y880_RS19600 SM00663 RNA polymerase I subunit A N-terminus Y880_RS19625 SM00649 Ribosomal protein L11/L12 Y880_RS19630 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Y880_RS19630 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y880_RS19715 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS19725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS19755 SM00421 helix_turn_helix, Lux Regulon Y880_RS19755 SM00448 cheY-homologous receiver domain Y880_RS19800 SM00858 Y880_RS19800 Y880_RS19815 SM00382 ATPases associated with a variety of cellular activities Y880_RS19825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS19825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS19865 SM00479 Y880_RS19865 Y880_RS19945 SM00267 diguanylate cyclase Y880_RS19980 SM00155 Phospholipase D. Active site motifs. Y880_RS19985 SM00867 YceI-like domain Y880_RS19990 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS20010 SM00867 YceI-like domain Y880_RS20025 SM00849 Metallo-beta-lactamase superfamily Y880_RS20055 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y880_RS20080 SM00899 Y880_RS20080 Y880_RS20125 SM00052 Putative diguanylate phosphodiesterase Y880_RS20125 SM00267 diguanylate cyclase Y880_RS20190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS20190 SM00387 Histidine kinase-like ATPases Y880_RS20190 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS20195 SM00448 cheY-homologous receiver domain Y880_RS20195 SM00862 Transcriptional regulatory protein, C terminal Y880_RS20225 SM00883 Chaperonin 10 Kd subunit Y880_RS20240 SM00822 Y880_RS20240 Y880_RS20275 SM00267 diguanylate cyclase Y880_RS20275 SM00448 cheY-homologous receiver domain Y880_RS20285 SM00091 PAS domain Y880_RS20285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS20285 SM00387 Histidine kinase-like ATPases Y880_RS20285 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS20310 SM00957 SecA DEAD-like domain Y880_RS20310 SM00958 SecA preprotein cross-linking domain Y880_RS20335 SM00864 Tubulin/FtsZ family, GTPase domain Y880_RS20335 SM00865 Tubulin/FtsZ family, C-terminal domain Y880_RS20340 SM00842 Cell division protein FtsA Y880_RS20435 SM00749 bacterial OsmY and nodulation domain Y880_RS20485 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS20535 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y880_RS20585 SM00382 ATPases associated with a variety of cellular activities Y880_RS20590 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS20610 SM00382 ATPases associated with a variety of cellular activities Y880_RS20690 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS20725 SM00845 GatB domain Y880_RS20750 SM01359 Y880_RS20750 Y880_RS20750 SM01360 Y880_RS20750 Y880_RS20770 SM00448 cheY-homologous receiver domain Y880_RS20775 SM00387 Histidine kinase-like ATPases Y880_RS20775 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS20800 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS20835 SM00382 ATPases associated with a variety of cellular activities Y880_RS20840 SM00382 ATPases associated with a variety of cellular activities Y880_RS20850 SM00344 helix_turn_helix ASNC type Y880_RS20855 SM00797 Allophanate hydrolase subunit 2 Y880_RS20860 SM00796 Allophanate hydrolase subunit 1 Y880_RS20885 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Y880_RS20890 SM00671 Sel1-like repeats. Y880_RS20920 SM00644 Y880_RS20920 Y880_RS21020 SM00912 haemagglutination activity domain Y880_RS21040 SM00382 ATPases associated with a variety of cellular activities Y880_RS21040 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS21065 SM00091 PAS domain Y880_RS21065 SM00387 Histidine kinase-like ATPases Y880_RS21065 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS21070 SM00382 ATPases associated with a variety of cellular activities Y880_RS21070 SM00448 cheY-homologous receiver domain Y880_RS21140 SM00904 Riboflavin kinase Y880_RS21160 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Y880_RS21240 SM00382 ATPases associated with a variety of cellular activities Y880_RS21250 SM00244 prohibitin homologues Y880_RS21280 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y880_RS21310 SM00382 ATPases associated with a variety of cellular activities Y880_RS21315 SM00382 ATPases associated with a variety of cellular activities Y880_RS21350 SM00052 Putative diguanylate phosphodiesterase Y880_RS21350 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS21350 SM00091 PAS domain Y880_RS21350 SM00267 diguanylate cyclase Y880_RS21365 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y880_RS21390 SM00382 ATPases associated with a variety of cellular activities Y880_RS21405 SM00248 ankyrin repeats Y880_RS21410 SM01060 Y880_RS21410 Y880_RS21525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS21525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS21610 SM00972 Spore Coat Protein U domain Y880_RS21615 SM00972 Spore Coat Protein U domain Y880_RS21620 SM00972 Spore Coat Protein U domain Y880_RS21635 SM00972 Spore Coat Protein U domain Y880_RS21665 SM00422 helix_turn_helix, mercury resistance Y880_RS21695 SM00937 Y880_RS21695 Y880_RS21705 SM00028 Tetratricopeptide repeats Y880_RS21725 SM01400 Y880_RS21725 Y880_RS21830 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS21850 SM00947 Carbonic anhydrase Y880_RS21995 SM00100 Cyclic nucleotide-monophosphate binding domain Y880_RS22105 SM00091 PAS domain Y880_RS22105 SM00387 Histidine kinase-like ATPases Y880_RS22105 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS22110 SM00382 ATPases associated with a variety of cellular activities Y880_RS22110 SM00448 cheY-homologous receiver domain Y880_RS22175 SM00749 bacterial OsmY and nodulation domain Y880_RS22180 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS22180 SM00322 K homology RNA-binding domain Y880_RS22190 SM01387 Y880_RS22190 Y880_RS22210 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS22250 SM00382 ATPases associated with a variety of cellular activities Y880_RS22260 SM01103 Y880_RS22260 Y880_RS22275 SM00851 MGS-like domain Y880_RS22275 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y880_RS22285 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Y880_RS22295 SM00271 DnaJ molecular chaperone homology domain Y880_RS22345 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS22345 SM00895 Y880_RS22345 Y880_RS22380 SM00448 cheY-homologous receiver domain Y880_RS22380 SM00862 Transcriptional regulatory protein, C terminal Y880_RS22385 SM00387 Histidine kinase-like ATPases Y880_RS22385 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS22390 SM00422 helix_turn_helix, mercury resistance Y880_RS22410 SM00448 cheY-homologous receiver domain Y880_RS22410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y880_RS22425 SM00344 helix_turn_helix ASNC type Y880_RS22435 SM00822 Y880_RS22435 Y880_RS22440 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS22535 SM00421 helix_turn_helix, Lux Regulon Y880_RS22635 SM00831 Cation transporter/ATPase, N-terminus Y880_RS22670 SM00822 Y880_RS22670 Y880_RS22730 SM00267 diguanylate cyclase Y880_RS22730 SM00448 cheY-homologous receiver domain Y880_RS22735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS22755 SM00878 Biotin carboxylase C-terminal domain Y880_RS22755 SM01209 Y880_RS22755 Y880_RS22785 SM00798 AICARFT/IMPCHase bienzyme Y880_RS22785 SM00851 MGS-like domain Y880_RS22790 SM01209 Y880_RS22790 Y880_RS22790 SM01210 Y880_RS22790 Y880_RS22795 SM00387 Histidine kinase-like ATPases Y880_RS22795 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS22795 SM00448 cheY-homologous receiver domain Y880_RS22825 SM00382 ATPases associated with a variety of cellular activities Y880_RS22905 SM00422 helix_turn_helix, mercury resistance Y880_RS22905 SM00871 Bacterial transcription activator, effector binding domain Y880_RS22940 SM00448 cheY-homologous receiver domain Y880_RS22940 SM00862 Transcriptional regulatory protein, C terminal Y880_RS22945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS22945 SM00387 Histidine kinase-like ATPases Y880_RS22945 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS22970 SM00988 UreE urease accessory protein, N-terminal domain Y880_RS22980 SM00382 ATPases associated with a variety of cellular activities Y880_RS23045 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS23045 SM00895 Y880_RS23045 Y880_RS23050 SM00822 Y880_RS23050 Y880_RS23060 SM00382 ATPases associated with a variety of cellular activities Y880_RS23065 SM00382 ATPases associated with a variety of cellular activities Y880_RS23090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS23090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS23135 SM00257 Lysin motif Y880_RS23145 SM00460 Transglutaminase/protease-like homologues Y880_RS23155 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS23160 SM00267 diguanylate cyclase Y880_RS23165 SM01005 Alanine racemase, C-terminal domain Y880_RS23195 SM00967 RNA 2'-O ribose methyltransferase substrate binding Y880_RS23200 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS23200 SM00357 Cold shock protein domain Y880_RS23200 SM00955 Y880_RS23200 Y880_RS23215 SM00788 Adenylosuccinate synthetase Y880_RS23230 SM00244 prohibitin homologues Y880_RS23235 SM00244 prohibitin homologues Y880_RS23255 SM00853 MutL C terminal dimerisation domain Y880_RS23255 SM01340 Y880_RS23255 Y880_RS23260 SM00257 Lysin motif Y880_RS23260 SM00646 Y880_RS23260 Y880_RS23280 SM00479 Y880_RS23280 Y880_RS23305 SM00450 Rhodanese Homology Domain Y880_RS23325 SM00052 Putative diguanylate phosphodiesterase Y880_RS23325 SM00267 diguanylate cyclase Y880_RS23350 SM00434 DNA Topoisomerase IV Y880_RS23365 SM00387 Histidine kinase-like ATPases Y880_RS23365 SM00433 TopoisomeraseII Y880_RS23445 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS23450 SM00448 cheY-homologous receiver domain Y880_RS23450 SM00862 Transcriptional regulatory protein, C terminal Y880_RS23470 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS23525 SM00382 ATPases associated with a variety of cellular activities Y880_RS23635 SM00052 Putative diguanylate phosphodiesterase Y880_RS23635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y880_RS23635 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS23635 SM00091 PAS domain Y880_RS23635 SM00267 diguanylate cyclase Y880_RS23660 SM01091 Transporter associated domain Y880_RS23715 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS23755 SM00965 Secretin and TonB N terminus short domain Y880_RS23775 SM00842 Cell division protein FtsA Y880_RS23785 SM00919 Malic enzyme, NAD binding domain Y880_RS23785 SM01274 Y880_RS23785 Y880_RS23795 SM00318 Staphylococcal nuclease homologues Y880_RS23805 SM00487 DEAD-like helicases superfamily Y880_RS23805 SM00490 helicase superfamily c-terminal domain Y880_RS23810 SM00836 DALR anticodon binding domain Y880_RS23810 SM01016 Arginyl tRNA synthetase N terminal dom Y880_RS23825 SM00382 ATPases associated with a variety of cellular activities Y880_RS23825 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS23920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS23920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS23920 SM01358 Y880_RS23920 Y880_RS23930 SM00382 ATPases associated with a variety of cellular activities Y880_RS23940 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS23940 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y880_RS23970 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS23995 SM00671 Sel1-like repeats. Y880_RS24005 SM00155 Phospholipase D. Active site motifs. Y880_RS24030 SM00382 ATPases associated with a variety of cellular activities Y880_RS24085 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS24085 SM00866 Y880_RS24085 Y880_RS24120 SM00869 Autotransporter beta-domain Y880_RS24150 SM00981 Y880_RS24150 Y880_RS24160 SM01230 Y880_RS24160 Y880_RS24185 SM00091 PAS domain Y880_RS24185 SM00387 Histidine kinase-like ATPases Y880_RS24185 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS24190 SM00382 ATPases associated with a variety of cellular activities Y880_RS24190 SM00448 cheY-homologous receiver domain Y880_RS24220 SM00450 Rhodanese Homology Domain Y880_RS24240 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y880_RS24240 SM00245 tail specific protease Y880_RS24255 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS24315 SM00478 endonuclease III Y880_RS24345 SM00382 ATPases associated with a variety of cellular activities Y880_RS24350 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS24370 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS24415 SM00387 Histidine kinase-like ATPases Y880_RS24415 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS24420 SM00382 ATPases associated with a variety of cellular activities Y880_RS24420 SM00448 cheY-homologous receiver domain Y880_RS24460 SM00825 Beta-ketoacyl synthase Y880_RS24480 SM00257 Lysin motif Y880_RS24515 SM00830 Chorismate mutase type II Y880_RS24575 SM00363 S4 RNA-binding domain Y880_RS24595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS24595 SM00387 Histidine kinase-like ATPases Y880_RS24595 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS24600 SM00448 cheY-homologous receiver domain Y880_RS24600 SM00862 Transcriptional regulatory protein, C terminal Y880_RS24605 SM00316 Ribosomal protein S1-like RNA-binding domain Y880_RS24605 SM00732 Likely ribonuclease with RNase H fold. Y880_RS24645 SM01118 Y880_RS24645 Y880_RS24650 SM00382 ATPases associated with a variety of cellular activities Y880_RS24720 SM01011 Aminopeptidase P, N-terminal domain Y880_RS24760 SM00382 ATPases associated with a variety of cellular activities Y880_RS24775 SM00829 Enoylreductase Y880_RS24800 SM00357 Cold shock protein domain Y880_RS24800 SM00382 ATPases associated with a variety of cellular activities Y880_RS24800 SM00959 Rho termination factor, N-terminal domain Y880_RS24820 SM01004 Delta-aminolevulinic acid dehydratase Y880_RS24865 SM00382 ATPases associated with a variety of cellular activities Y880_RS24915 SM00448 cheY-homologous receiver domain Y880_RS24915 SM00850 LytTr DNA-binding domain Y880_RS24985 SM01219 Y880_RS24985 Y880_RS25025 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS25055 SM00938 Nitrogen regulatory protein P-II Y880_RS25090 SM00052 Putative diguanylate phosphodiesterase Y880_RS25090 SM00267 diguanylate cyclase Y880_RS25120 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS25125 SM01005 Alanine racemase, C-terminal domain Y880_RS25155 SM00344 helix_turn_helix ASNC type Y880_RS25165 SM00155 Phospholipase D. Active site motifs. Y880_RS25240 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS25300 SM00072 Guanylate kinase homologues. Y880_RS25305 SM01409 Y880_RS25305 Y880_RS25310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y880_RS25310 SM00954 Region found in RelA / SpoT proteins Y880_RS25330 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS25345 SM00487 DEAD-like helicases superfamily Y880_RS25345 SM00490 helicase superfamily c-terminal domain Y880_RS25360 SM00411 bacterial (prokaryotic) histone like domain Y880_RS25405 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS25405 SM00895 Y880_RS25405 Y880_RS25425 SM00448 cheY-homologous receiver domain Y880_RS25425 SM00862 Transcriptional regulatory protein, C terminal Y880_RS25430 SM00091 PAS domain Y880_RS25430 SM00387 Histidine kinase-like ATPases Y880_RS25430 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS25435 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS25435 SM01091 Transporter associated domain Y880_RS25445 SM00448 cheY-homologous receiver domain Y880_RS25455 SM00382 ATPases associated with a variety of cellular activities Y880_RS25530 SM00382 ATPases associated with a variety of cellular activities Y880_RS25550 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS25595 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS25620 SM00155 Phospholipase D. Active site motifs. Y880_RS25635 SM00989 Y880_RS25635 Y880_RS25655 SM00893 Electron transfer flavoprotein domain Y880_RS25665 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS25780 SM01001 AIR carboxylase Y880_RS25790 SM00829 Enoylreductase Y880_RS25840 SM00878 Biotin carboxylase C-terminal domain Y880_RS25885 SM00052 Putative diguanylate phosphodiesterase Y880_RS25885 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS25885 SM00091 PAS domain Y880_RS25885 SM00267 diguanylate cyclase Y880_RS25925 SM00382 ATPases associated with a variety of cellular activities Y880_RS26100 SM00382 ATPases associated with a variety of cellular activities Y880_RS26100 SM00448 cheY-homologous receiver domain Y880_RS26105 SM00091 PAS domain Y880_RS26105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS26105 SM00387 Histidine kinase-like ATPases Y880_RS26105 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS26110 SM00644 Y880_RS26110 Y880_RS26120 SM00267 diguanylate cyclase Y880_RS26150 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Y880_RS26150 SM00474 3'-5' exonuclease Y880_RS26150 SM00475 5'-3' exonuclease Y880_RS26150 SM00482 DNA polymerase A domain Y880_RS26185 SM00382 ATPases associated with a variety of cellular activities Y880_RS26200 SM00382 ATPases associated with a variety of cellular activities Y880_RS26200 SM00930 Y880_RS26200 Y880_RS26225 SM01230 Y880_RS26225 Y880_RS26240 SM00382 ATPases associated with a variety of cellular activities Y880_RS26240 SM00448 cheY-homologous receiver domain Y880_RS26245 SM00387 Histidine kinase-like ATPases Y880_RS26245 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS26295 SM00822 Y880_RS26295 Y880_RS26300 SM01230 Y880_RS26300 Y880_RS26310 SM00822 Y880_RS26310 Y880_RS26315 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS26315 SM00895 Y880_RS26315 Y880_RS26325 SM00860 SMI1 / KNR4 family Y880_RS26330 SM00978 Y880_RS26330 Y880_RS26350 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y880_RS26365 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y880_RS26380 SM00646 Y880_RS26380 Y880_RS26420 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. Y880_RS26475 SM00420 helix_turn_helix, Deoxyribose operon repressor Y880_RS26475 SM01134 Y880_RS26475 Y880_RS26495 SM00382 ATPases associated with a variety of cellular activities Y880_RS26535 SM00470 ParB-like nuclease domain Y880_RS26550 SM01228 Y880_RS26550 Y880_RS26590 SM00382 ATPases associated with a variety of cellular activities Y880_RS26590 SM00760 Bacterial dnaA protein helix-turn-helix domain Y880_RS26595 SM00480 DNA polymerase III beta subunit Y880_RS26605 SM00387 Histidine kinase-like ATPases Y880_RS26605 SM00433 TopoisomeraseII Y880_RS26610 SM00563 Phosphate acyltransferases Y880_RS26625 SM00836 DALR anticodon binding domain Y880_RS26660 SM00028 Tetratricopeptide repeats Y880_RS26685 SM00257 Lysin motif Y880_RS26700 SM00829 Enoylreductase Y880_RS26760 SM00421 helix_turn_helix, Lux Regulon Y880_RS26760 SM00448 cheY-homologous receiver domain Y880_RS26800 SM01321 Y880_RS26800 Y880_RS26850 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS26895 SM00849 Metallo-beta-lactamase superfamily Y880_RS26955 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS26975 SM00382 ATPases associated with a variety of cellular activities Y880_RS26985 SM00331 Sigma factor PP2C-like phosphatases Y880_RS26985 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Y880_RS27060 SM00382 ATPases associated with a variety of cellular activities Y880_RS27060 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS27120 SM00947 Carbonic anhydrase Y880_RS27215 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS27215 SM00895 Y880_RS27215 Y880_RS27220 SM00895 Y880_RS27220 Y880_RS27250 SM00769 Water Stress and Hypersensitive response Y880_RS27375 SM00965 Secretin and TonB N terminus short domain Y880_RS27400 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS27440 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS27470 SM00267 diguanylate cyclase Y880_RS27485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS27485 SM00331 Sigma factor PP2C-like phosphatases Y880_RS27500 SM00138 Methyltransferase, chemotaxis proteins Y880_RS27510 SM00260 Two component signalling adaptor domain Y880_RS27520 SM00448 cheY-homologous receiver domain Y880_RS27525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS27535 SM00822 Y880_RS27535 Y880_RS27545 SM00382 ATPases associated with a variety of cellular activities Y880_RS27565 SM00014 Acid phosphatase homologues Y880_RS27595 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Y880_RS27595 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Y880_RS27715 SM01130 Y880_RS27715 Y880_RS27720 SM01007 Class II Aldolase and Adducin N-terminal domain Y880_RS27725 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS27730 SM00882 Coenzyme A transferase Y880_RS27735 SM00882 Coenzyme A transferase Y880_RS27780 SM00346 helix_turn_helix isocitrate lyase regulation Y880_RS27840 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS27850 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS27865 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS27905 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS27955 SM00448 cheY-homologous receiver domain Y880_RS27965 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y880_RS28000 SM00100 Cyclic nucleotide-monophosphate binding domain Y880_RS28000 SM00419 helix_turn_helix, cAMP Regulatory protein Y880_RS28025 SM00382 ATPases associated with a variety of cellular activities Y880_RS28050 SM00052 Putative diguanylate phosphodiesterase Y880_RS28050 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS28050 SM00091 PAS domain Y880_RS28050 SM00267 diguanylate cyclase Y880_RS28075 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS28075 SM00091 PAS domain Y880_RS28075 SM00267 diguanylate cyclase Y880_RS28115 SM01230 Y880_RS28115 Y880_RS28135 SM00382 ATPases associated with a variety of cellular activities Y880_RS28160 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS28185 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Y880_RS28205 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS28265 SM00382 ATPases associated with a variety of cellular activities Y880_RS28280 SM00869 Autotransporter beta-domain Y880_RS28335 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y880_RS28340 SM00091 PAS domain Y880_RS28340 SM00267 diguanylate cyclase Y880_RS28435 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Y880_RS28435 SM01232 Y880_RS28435 Y880_RS28440 SM00563 Phosphate acyltransferases Y880_RS28450 SM00671 Sel1-like repeats. Y880_RS28465 SM00764 Citrate lyase ligase C-terminal domain Y880_RS28520 SM00382 ATPases associated with a variety of cellular activities Y880_RS28520 SM00962 SRP54-type protein, GTPase domain Y880_RS28520 SM00963 SRP54-type protein, helical bundle domain Y880_RS28525 SM00382 ATPases associated with a variety of cellular activities Y880_RS28615 SM01152 Y880_RS28615 Y880_RS28635 SM00382 ATPases associated with a variety of cellular activities Y880_RS28655 SM00116 Domain in cystathionine beta-synthase and other proteins. Y880_RS28680 SM00732 Likely ribonuclease with RNase H fold. Y880_RS28700 SM00448 cheY-homologous receiver domain Y880_RS28705 SM00448 cheY-homologous receiver domain Y880_RS28710 SM00260 Two component signalling adaptor domain Y880_RS28715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y880_RS28720 SM00138 Methyltransferase, chemotaxis proteins Y880_RS28725 SM00073 Histidine Phosphotransfer domain Y880_RS28730 SM00260 Two component signalling adaptor domain Y880_RS28730 SM00387 Histidine kinase-like ATPases Y880_RS28730 SM00448 cheY-homologous receiver domain Y880_RS28730 SM01231 Y880_RS28730 Y880_RS28740 SM00260 Two component signalling adaptor domain Y880_RS28745 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS28785 SM00867 YceI-like domain Y880_RS28790 SM00347 helix_turn_helix multiple antibiotic resistance protein Y880_RS28810 SM00487 DEAD-like helicases superfamily Y880_RS28810 SM00490 helicase superfamily c-terminal domain Y880_RS28830 SM00996 S-adenosyl-L-homocysteine hydrolase Y880_RS28830 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Y880_RS28935 SM00244 prohibitin homologues Y880_RS28940 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS28950 SM00487 DEAD-like helicases superfamily Y880_RS28950 SM00490 helicase superfamily c-terminal domain Y880_RS28955 SM00357 Cold shock protein domain Y880_RS28975 SM00382 ATPases associated with a variety of cellular activities Y880_RS28975 SM01086 C-terminal, D2-small domain, of ClpB protein Y880_RS28985 SM00563 Phosphate acyltransferases Y880_RS28995 SM00448 cheY-homologous receiver domain Y880_RS28995 SM00862 Transcriptional regulatory protein, C terminal Y880_RS29000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y880_RS29000 SM00387 Histidine kinase-like ATPases Y880_RS29000 SM00388 His Kinase A (phosphoacceptor) domain Y880_RS29040 SM00965 Secretin and TonB N terminus short domain Y880_RS29160 SM00878 Biotin carboxylase C-terminal domain Y880_RS29165 SM00796 Allophanate hydrolase subunit 1 Y880_RS29170 SM00797 Allophanate hydrolase subunit 2 Y880_RS29185 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS29185 SM00876 Biotin and Thiamin Synthesis associated domain Y880_RS29245 SM00729 Elongator protein 3, MiaB family, Radical SAM Y880_RS29265 SM00344 helix_turn_helix ASNC type Y880_RS29315 SM00327 von Willebrand factor (vWF) type A domain Y880_RS29325 SM00100 Cyclic nucleotide-monophosphate binding domain Y880_RS29325 SM00419 helix_turn_helix, cAMP Regulatory protein Y880_RS29360 SM00091 PAS domain Y880_RS29360 SM00421 helix_turn_helix, Lux Regulon Y880_RS29375 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS29435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y880_RS29440 SM00861 Transketolase, pyrimidine binding domain Y880_RS29455 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y880_RS29520 SM00342 helix_turn_helix, arabinose operon control protein Y880_RS29560 SM01276 Y880_RS29560 Y880_RS29585 SM00052 Putative diguanylate phosphodiesterase Y880_RS29585 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS29585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS29585 SM00091 PAS domain Y880_RS29585 SM00267 diguanylate cyclase Y880_RS29595 SM00400 zinc finger Y880_RS29595 SM00493 Y880_RS29595 Y880_RS29595 SM00766 DNA primase DnaG DnaB-binding Y880_RS29615 SM01207 Y880_RS29615 Y880_RS29620 SM00905 Dihydroneopterin aldolase Y880_RS29650 SM00763 PrkA AAA domain Y880_RS29655 SM00450 Rhodanese Homology Domain Y880_RS29670 SM00650 Ribosomal RNA adenine dimethylases Y880_RS29700 SM00271 DnaJ molecular chaperone homology domain Y880_RS29710 SM00062 Bacterial periplasmic substrate-binding proteins Y880_RS29710 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y880_RS29710 SM00091 PAS domain Y880_RS29710 SM00387 Histidine kinase-like ATPases Y880_RS29715 SM00421 helix_turn_helix, Lux Regulon Y880_RS29715 SM00448 cheY-homologous receiver domain Y880_RS29725 SM00382 ATPases associated with a variety of cellular activities Y880_RS29765 SM00530 Helix-turn-helix XRE-family like proteins Y880_RS29905 SM00232 JAB/MPN domain Y880_RS29960 SM00100 Cyclic nucleotide-monophosphate binding domain Y880_RS29960 SM00419 helix_turn_helix, cAMP Regulatory protein Y880_RS29985 SM00382 ATPases associated with a variety of cellular activities Y880_RS29990 SM00822 Y880_RS29990 Y880_RS30010 SM00859 Semialdehyde dehydrogenase, NAD binding domain