Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 SUPERFAMILY SSF81301 1 119 1.42E-29 T 29-03-2018 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 Pfam PF01743 Poly A polymerase head domain 4 122 3.8E-18 T 29-03-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 Gene3D G3DSA:1.10.3090.10 119 409 1.3E-54 T 29-03-2018 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 SUPERFAMILY SSF81891 120 401 1.16E-51 T 29-03-2018 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 1.4E-12 T 29-03-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 41.251 T 29-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 55.144 T 29-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 Gene3D G3DSA:3.30.460.10 1 118 3.0E-29 T 29-03-2018 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 PIRSF PIRSF000813 1 408 5.1E-201 T 29-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Y880_RS29630 1775289ad28c2942988f6b44968c9b1c 410 Pfam PF01966 HD domain 231 320 7.5E-8 T 29-03-2018 IPR006674 HD domain Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 44 585 54.366 T 29-03-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 SUPERFAMILY SSF89000 424 473 1.37E-13 T 29-03-2018 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 SUPERFAMILY SSF110921 479 583 2.22E-33 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 279 292 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 Pfam PF08502 LeuA allosteric (dimerisation) domain 458 583 1.1E-28 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 Pfam PF00682 HMGL-like 69 349 2.1E-77 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 SUPERFAMILY SSF51569 58 366 1.83E-98 T 29-03-2018 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 SMART SM00917 458 584 7.7E-31 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 76 92 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 43 584 1.3E-241 T 29-03-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS17165 481152020dec95c53c02fc0229d9bd6f 592 Gene3D G3DSA:3.20.20.70 46 412 1.6E-110 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 PIRSF PIRSF037495 1 464 1.3E-137 T 29-03-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 Gene3D G3DSA:3.50.50.60 2 110 4.6E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 Gene3D G3DSA:3.50.50.60 111 147 0.015 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 311 1.4E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.8E-10 T 29-03-2018 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 288 310 1.8E-10 T 29-03-2018 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 1.8E-10 T 29-03-2018 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.8E-10 T 29-03-2018 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 Gene3D G3DSA:3.50.50.60 148 332 1.8E-11 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 SUPERFAMILY SSF51905 6 330 4.86E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08180 930f54fef00747352a471a3f0b9e4cdd 464 Pfam PF04324 BFD-like [2Fe-2S] binding domain 381 424 7.8E-12 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y880_RS09595 610d1341910a7eec476a540ef580881d 307 Gene3D G3DSA:1.10.10.10 3 84 3.5E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09595 610d1341910a7eec476a540ef580881d 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.0E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09595 610d1341910a7eec476a540ef580881d 307 SUPERFAMILY SSF46785 3 110 9.08E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09595 610d1341910a7eec476a540ef580881d 307 Pfam PF03466 LysR substrate binding domain 88 298 2.7E-46 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09595 610d1341910a7eec476a540ef580881d 307 Gene3D G3DSA:3.40.190.10 88 175 6.0E-19 T 29-03-2018 Y880_RS09595 610d1341910a7eec476a540ef580881d 307 Gene3D G3DSA:3.40.190.10 176 265 2.7E-24 T 29-03-2018 Y880_RS09595 610d1341910a7eec476a540ef580881d 307 SUPERFAMILY SSF53850 89 301 3.98E-45 T 29-03-2018 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 Gene3D G3DSA:3.40.1380.20 319 471 1.1E-45 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 SUPERFAMILY SSF50800 73 168 1.4E-25 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 Gene3D G3DSA:3.20.20.60 1 107 4.8E-15 T 29-03-2018 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 Gene3D G3DSA:2.40.33.10 108 160 4.9E-21 T 29-03-2018 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 Pfam PF00224 Pyruvate kinase, barrel domain 5 335 7.8E-111 T 29-03-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 Gene3D G3DSA:3.20.20.60 161 318 1.6E-60 T 29-03-2018 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 SUPERFAMILY SSF52935 320 470 1.2E-37 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 SUPERFAMILY SSF51621 157 339 3.84E-91 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 SUPERFAMILY SSF51621 4 77 3.84E-91 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 PRINTS PR01050 Pyruvate kinase family signature 62 78 8.9E-61 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 PRINTS PR01050 Pyruvate kinase family signature 310 326 8.9E-61 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 PRINTS PR01050 Pyruvate kinase family signature 291 309 8.9E-61 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 PRINTS PR01050 Pyruvate kinase family signature 241 265 8.9E-61 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 PRINTS PR01050 Pyruvate kinase family signature 187 201 8.9E-61 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 PRINTS PR01050 Pyruvate kinase family signature 214 240 8.9E-61 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 PRINTS PR01050 Pyruvate kinase family signature 266 290 8.9E-61 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 470 1.0E-149 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 467 3.9E-27 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS04465 bde266c233a62c76dad1835d4ade32e6 477 ProSitePatterns PS00110 Pyruvate kinase active site signature. 212 224 - T 29-03-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 SUPERFAMILY SSF53067 179 247 6.1E-35 T 29-03-2018 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 SUPERFAMILY SSF53067 296 416 6.1E-35 T 29-03-2018 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 184 197 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 Gene3D G3DSA:3.30.420.40 189 398 2.0E-31 T 29-03-2018 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 Gene3D G3DSA:3.30.420.40 6 188 1.5E-33 T 29-03-2018 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 Pfam PF00012 Hsp70 protein 10 230 4.0E-13 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 Pfam PF00012 Hsp70 protein 299 396 1.2E-9 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 PRINTS PR00301 70kDa heat shock protein signature 8 21 1.2E-7 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 PRINTS PR00301 70kDa heat shock protein signature 190 200 1.2E-7 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 PRINTS PR00301 70kDa heat shock protein signature 124 144 1.2E-7 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 PRINTS PR00301 70kDa heat shock protein signature 36 48 1.2E-7 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 374 388 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS22880 87888ec7acde9f3e15ff7130184331ac 421 SUPERFAMILY SSF53067 9 175 7.45E-28 T 29-03-2018 Y880_RS09675 c04627ed3193bd555331e774f5a9a700 328 PIRSF PIRSF018266 4 328 4.5E-93 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS09675 c04627ed3193bd555331e774f5a9a700 328 Pfam PF04773 FecR protein 117 213 3.9E-18 T 29-03-2018 IPR006860 FecR protein Y880_RS09675 c04627ed3193bd555331e774f5a9a700 328 Pfam PF16220 Domain of unknown function (DUF4880) 14 56 9.7E-14 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS06755 5cb32d963d6fdf22d5fabeb11046af5a 232 Gene3D G3DSA:3.20.20.70 20 232 8.2E-19 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS06755 5cb32d963d6fdf22d5fabeb11046af5a 232 Pfam PF13353 4Fe-4S single cluster domain 19 95 6.7E-9 T 29-03-2018 Y880_RS06755 5cb32d963d6fdf22d5fabeb11046af5a 232 SUPERFAMILY SSF102114 18 196 9.81E-21 T 29-03-2018 Y880_RS06755 5cb32d963d6fdf22d5fabeb11046af5a 232 Pfam PF04055 Radical SAM superfamily 27 157 3.2E-14 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS06755 5cb32d963d6fdf22d5fabeb11046af5a 232 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 7 194 7.5E-73 T 29-03-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein Y880_RS23400 db7be9ca466a8f4f5d8f5d1c0f0457ae 482 Pfam PF02321 Outer membrane efflux protein 244 437 1.4E-30 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS23400 db7be9ca466a8f4f5d8f5d1c0f0457ae 482 Pfam PF02321 Outer membrane efflux protein 36 217 2.0E-24 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS23400 db7be9ca466a8f4f5d8f5d1c0f0457ae 482 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 29 452 2.2E-140 T 29-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 Y880_RS23400 db7be9ca466a8f4f5d8f5d1c0f0457ae 482 SUPERFAMILY SSF56954 32 451 2.88E-90 T 29-03-2018 Y880_RS23400 db7be9ca466a8f4f5d8f5d1c0f0457ae 482 Gene3D G3DSA:1.20.1600.10 16 443 2.2E-74 T 29-03-2018 Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 Gene3D G3DSA:3.40.50.2300 4 125 1.2E-32 T 29-03-2018 Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 SMART SM00862 152 228 9.4E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 228 5.7E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 SUPERFAMILY SSF46894 129 229 6.52E-27 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 SMART SM00448 7 117 1.1E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 Pfam PF00072 Response regulator receiver domain 9 117 3.1E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 Gene3D G3DSA:1.10.10.10 126 234 1.0E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06115 d2ff56a09eb1c8fd0db373b8abe17188 235 SUPERFAMILY SSF52172 8 131 4.13E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 273 310 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 32 467 2.9E-174 T 29-03-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855 Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 Gene3D G3DSA:3.90.1150.10 341 468 2.2E-33 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 SUPERFAMILY SSF53383 39 463 3.79E-115 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 Gene3D G3DSA:3.40.640.10 76 340 8.9E-69 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 Pfam PF00202 Aminotransferase class-III 49 463 2.6E-88 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 PIRSF PIRSF000521 30 155 2.8E-4 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS09415 905a1efe1dcac3f23ae45e781f5ca58c 469 PIRSF PIRSF000521 145 466 1.3E-29 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 Pfam PF00563 EAL domain 415 643 4.8E-46 T 29-03-2018 IPR001633 EAL domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 SMART SM00267 225 398 2.2E-31 T 29-03-2018 IPR000160 GGDEF domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 Gene3D G3DSA:3.20.20.450 406 647 7.2E-47 T 29-03-2018 IPR001633 EAL domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 SMART SM00304 171 223 8.9E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 SUPERFAMILY SSF55073 241 391 9.42E-26 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 SUPERFAMILY SSF141868 414 647 3.14E-46 T 29-03-2018 IPR001633 EAL domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 Pfam PF16448 LapD/MoxY periplasmic domain 23 145 7.3E-41 T 29-03-2018 IPR032244 LapD/MoxY, periplasmic domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 SMART SM00052 408 648 5.8E-12 T 29-03-2018 IPR001633 EAL domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 389 7.7E-19 T 29-03-2018 IPR000160 GGDEF domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 390 3.7E-27 T 29-03-2018 IPR000160 GGDEF domain Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 Gene3D G3DSA:3.30.70.270 219 399 1.7E-35 T 29-03-2018 Y880_RS04135 c8684a9ef98ee1a7ab24d1cf3320ffa8 650 Pfam PF00672 HAMP domain 171 219 2.0E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 SUPERFAMILY SSF52922 694 880 1.17E-63 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 PIRSF PIRSF000156 1 882 0.0 T 29-03-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 Gene3D G3DSA:3.40.50.970 51 464 1.8E-84 T 29-03-2018 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 123 287 4.2E-8 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 Gene3D G3DSA:3.40.50.970 465 698 1.6E-68 T 29-03-2018 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 SUPERFAMILY SSF52518 52 460 6.59E-140 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 Gene3D G3DSA:3.40.50.920 699 882 4.1E-43 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 2 880 0.0 T 29-03-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Y880_RS23615 f06b8e008d9f7d67ad4bbcde6468126f 882 SUPERFAMILY SSF52518 466 693 2.94E-97 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 Pfam PF00425 chorismate binding enzyme 246 505 4.0E-82 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 Pfam PF04715 Anthranilate synthase component I, N terminal region 51 194 5.7E-6 T 29-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 Gene3D G3DSA:3.60.120.10 16 523 2.2E-140 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 37 516 2.0E-173 T 29-03-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 SUPERFAMILY SSF56322 36 513 1.2E-138 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 PIRSF PIRSF001373 4 524 8.8E-218 T 29-03-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 PRINTS PR00095 Anthranilate synthase component I signature 353 366 8.9E-20 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 PRINTS PR00095 Anthranilate synthase component I signature 367 380 8.9E-20 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 PRINTS PR00095 Anthranilate synthase component I signature 447 461 8.9E-20 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS01780 8b2f7dc0e289652b92bb45133fe370db 530 PRINTS PR00095 Anthranilate synthase component I signature 462 476 8.9E-20 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS24050 a233ba3c2ce61af3b32db969d8c03969 509 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 29-03-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 Y880_RS24050 a233ba3c2ce61af3b32db969d8c03969 509 Pfam PF00221 Aromatic amino acid lyase 10 469 1.0E-184 T 29-03-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Y880_RS24050 a233ba3c2ce61af3b32db969d8c03969 509 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 507 1.8E-219 T 29-03-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24050 a233ba3c2ce61af3b32db969d8c03969 509 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 503 44.866 T 29-03-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24050 a233ba3c2ce61af3b32db969d8c03969 509 SUPERFAMILY SSF48557 3 505 4.08E-191 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS24050 a233ba3c2ce61af3b32db969d8c03969 509 Gene3D G3DSA:1.10.275.10 1 196 7.2E-70 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS24050 a233ba3c2ce61af3b32db969d8c03969 509 Gene3D G3DSA:1.20.200.10 197 508 3.3E-122 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF57783 702 745 4.76E-9 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 SMART SM00436 138 226 1.5E-50 T 29-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 636 8.4E-250 T 29-03-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF08272 Topoisomerase I zinc-ribbon-like 826 865 6.7E-20 T 29-03-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF08272 Topoisomerase I zinc-ribbon-like 760 795 1.7E-11 T 29-03-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 111 124 3.6E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 319 328 3.6E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 495 509 3.6E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 196 214 3.6E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 3.6E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 314 328 - T 29-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF56712 3 612 4.32E-202 T 29-03-2018 IPR023405 DNA topoisomerase, type IA, core domain Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF57783 811 867 1.07E-23 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:1.10.460.10 473 587 1.9E-24 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:1.10.460.10 169 348 2.7E-47 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:2.70.20.10 351 472 1.8E-37 T 29-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01131 DNA topoisomerase 162 569 2.3E-128 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01751 Toprim domain 5 147 2.3E-32 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 SMART SM00493 3 137 7.2E-31 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:2.20.25.10 811 865 7.6E-30 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.30.65.10 748 809 1.1E-9 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.30.65.10 698 747 9.0E-12 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.30.65.10 588 651 3.7E-12 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.40.50.140 1 168 4.9E-50 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 712 747 1.3E-11 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 602 625 2.5E-4 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF57783 746 806 1.7E-16 T 29-03-2018 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 SMART SM00437 277 532 5.6E-119 T 29-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Y880_RS13055 766c40ef3a3dc288f6b4f68dbaa5c473 868 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 725 58.964 T 29-03-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 Gene3D G3DSA:2.60.40.420 375 588 2.7E-52 T 29-03-2018 IPR008972 Cupredoxin Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 ProSitePatterns PS00080 Multicopper oxidases signature 2. 570 581 - T 29-03-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 Pfam PF00394 Multicopper oxidase 171 346 5.2E-32 T 29-03-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 SUPERFAMILY SSF49503 165 380 1.13E-56 T 29-03-2018 IPR008972 Cupredoxin Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 3 587 1.7E-297 T 29-03-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 SUPERFAMILY SSF49503 46 184 4.44E-39 T 29-03-2018 IPR008972 Cupredoxin Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 Pfam PF07732 Multicopper oxidase 52 162 1.9E-40 T 29-03-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 ProSitePatterns PS00079 Multicopper oxidases signature 1. 565 585 - T 29-03-2018 IPR033138 Multicopper oxidases, conserved site Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 Gene3D G3DSA:2.60.40.420 166 374 5.8E-39 T 29-03-2018 IPR008972 Cupredoxin Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 SUPERFAMILY SSF49503 438 587 7.57E-36 T 29-03-2018 IPR008972 Cupredoxin Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 Gene3D G3DSA:2.60.40.420 36 159 1.9E-31 T 29-03-2018 IPR008972 Cupredoxin Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 31 3.9E-5 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y880_RS07495 0d13397b0dbf9e781b7846cfb115737f 593 Pfam PF07731 Multicopper oxidase 477 590 1.6E-25 T 29-03-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 Gene3D G3DSA:3.55.50.10 95 188 1.5E-31 T 29-03-2018 Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 SUPERFAMILY SSF69255 371 459 6.28E-34 T 29-03-2018 Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 SUPERFAMILY SSF69349 449 631 1.65E-40 T 29-03-2018 Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 10 529 4.0E-202 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 Gene3D G3DSA:2.40.50.230 377 459 1.1E-38 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 SUPERFAMILY SSF69279 191 371 8.33E-42 T 29-03-2018 Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 SUPERFAMILY SSF69279 10 184 6.8E-57 T 29-03-2018 Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 Pfam PF05954 Phage late control gene D protein (GPD) 29 327 1.8E-77 T 29-03-2018 Y880_RS14525 566918707ec8c32ce9b447b6ca21e4fb 688 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 511 1.3E-121 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS25110 80c87eb10bdbf5f927bce4fbfb2db290 619 Gene3D G3DSA:3.40.1080.10 1 196 1.3E-17 T 29-03-2018 Y880_RS25110 80c87eb10bdbf5f927bce4fbfb2db290 619 SUPERFAMILY SSF100950 279 527 4.6E-46 T 29-03-2018 Y880_RS25110 80c87eb10bdbf5f927bce4fbfb2db290 619 SUPERFAMILY SSF100950 202 244 4.6E-46 T 29-03-2018 Y880_RS25110 80c87eb10bdbf5f927bce4fbfb2db290 619 Gene3D G3DSA:3.40.1080.10 207 541 1.3E-73 T 29-03-2018 Y880_RS25110 80c87eb10bdbf5f927bce4fbfb2db290 619 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 341 500 5.6E-45 T 29-03-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Y880_RS19025 cad7219e7a641ef9da46dadcb49fec4e 222 Pfam PF08239 Bacterial SH3 domain 53 101 2.5E-10 T 29-03-2018 IPR003646 SH3-like domain, bacterial-type Y880_RS19025 cad7219e7a641ef9da46dadcb49fec4e 222 PIRSF PIRSF006158 15 222 1.2E-74 T 29-03-2018 IPR016476 SH3 domain protein Y880_RS19025 cad7219e7a641ef9da46dadcb49fec4e 222 SMART SM00287 41 104 6.4E-7 T 29-03-2018 IPR003646 SH3-like domain, bacterial-type Y880_RS19025 cad7219e7a641ef9da46dadcb49fec4e 222 Gene3D G3DSA:2.40.50.110 29 91 3.8E-10 T 29-03-2018 Y880_RS19025 cad7219e7a641ef9da46dadcb49fec4e 222 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 45 221 1.7E-42 T 29-03-2018 IPR016476 SH3 domain protein Y880_RS19025 cad7219e7a641ef9da46dadcb49fec4e 222 Gene3D G3DSA:1.20.5.50 92 184 2.0E-7 T 29-03-2018 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF07517 SecA DEAD-like domain 6 402 2.5E-133 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF81886 892 904 1.19E-81 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF81886 620 840 1.19E-81 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 818 0.0 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.10.450.50 734 916 8.1E-53 T 29-03-2018 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF52540 416 618 4.9E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.40.50.300 9 276 1.5E-59 T 29-03-2018 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.40.50.300 307 416 1.7E-6 T 29-03-2018 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF52540 368 415 3.27E-88 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF52540 5 228 3.27E-88 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 ProSitePatterns PS01312 SecA family signature. 500 515 - T 29-03-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF07516 SecA Wing and Scaffold domain 617 830 3.1E-67 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.40.50.300 417 633 2.7E-56 T 29-03-2018 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF81767 227 368 1.57E-40 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:1.10.3060.10 634 733 8.6E-33 T 29-03-2018 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.073 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SMART SM00957 6 402 0.0 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF01043 SecA preprotein cross-linking domain 232 358 3.8E-34 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 SMART SM00958 228 358 1.7E-74 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF02810 SEC-C motif 896 914 2.1E-10 T 29-03-2018 IPR004027 SEC-C motif Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 170 190 1.7E-70 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 63 87 1.7E-70 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 376 393 1.7E-70 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 101 115 1.7E-70 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 117 127 1.7E-70 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 339 361 1.7E-70 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS20310 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 413 426 1.7E-70 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y880_RS15350 34182ce34d56b9a9b49fd43241fa2a1a 249 SUPERFAMILY SSF52540 5 233 1.15E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15350 34182ce34d56b9a9b49fd43241fa2a1a 249 Pfam PF00005 ABC transporter 20 160 6.7E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS15350 34182ce34d56b9a9b49fd43241fa2a1a 249 SMART SM00382 29 211 4.6E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS15350 34182ce34d56b9a9b49fd43241fa2a1a 249 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS15350 34182ce34d56b9a9b49fd43241fa2a1a 249 Gene3D G3DSA:3.40.50.300 1 245 6.5E-53 T 29-03-2018 Y880_RS12800 afa623817ec950b60b55ce359572eff8 210 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 195 2.8E-52 T 29-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Y880_RS12800 afa623817ec950b60b55ce359572eff8 210 Hamap MF_00165 Thymidylate kinase [tmk]. 4 205 30.132 T 29-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Y880_RS12800 afa623817ec950b60b55ce359572eff8 210 Gene3D G3DSA:3.40.50.300 1 205 5.8E-54 T 29-03-2018 Y880_RS12800 afa623817ec950b60b55ce359572eff8 210 SUPERFAMILY SSF52540 3 207 1.65E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12800 afa623817ec950b60b55ce359572eff8 210 Pfam PF02223 Thymidylate kinase 8 195 3.8E-48 T 29-03-2018 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 256 1.4E-87 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 366 386 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 SUPERFAMILY SSF53067 8 259 2.46E-96 T 29-03-2018 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 8 500 1.4E-227 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 Gene3D G3DSA:3.30.420.40 4 252 7.8E-88 T 29-03-2018 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 PIRSF PIRSF000538 7 504 7.3E-180 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 Gene3D G3DSA:3.30.420.40 253 504 4.3E-82 T 29-03-2018 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 265 455 5.8E-62 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 139 151 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 Hamap MF_00186 Glycerol kinase [glpK]. 7 501 59.451 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y880_RS16050 3399c410cd2e669d9f592fb75cee140a 505 SUPERFAMILY SSF53067 258 500 1.51E-85 T 29-03-2018 Y880_RS29855 47fad60a2733628aaf94c0de0927a59b 209 Gene3D G3DSA:3.30.20.10 93 154 2.5E-17 T 29-03-2018 Y880_RS29855 47fad60a2733628aaf94c0de0927a59b 209 SUPERFAMILY SSF53955 104 208 3.37E-47 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS29855 47fad60a2733628aaf94c0de0927a59b 209 SUPERFAMILY SSF53955 2 76 3.37E-47 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS24825 5f797f6bec9ce3208ddc48b846ea1901 196 Pfam PF09335 SNARE associated Golgi protein 23 139 3.6E-18 T 29-03-2018 IPR032816 SNARE associated Golgi protein Y880_RS28320 bec8a2a0b40b9f730df32e129c326cfd 413 Pfam PF07690 Major Facilitator Superfamily 17 270 1.3E-16 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS28320 bec8a2a0b40b9f730df32e129c326cfd 413 SUPERFAMILY SSF103473 12 401 4.97E-34 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS28320 bec8a2a0b40b9f730df32e129c326cfd 413 PRINTS PR01035 Tetracycline resistance protein signature 139 161 1.5E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS28320 bec8a2a0b40b9f730df32e129c326cfd 413 PRINTS PR01035 Tetracycline resistance protein signature 318 338 1.5E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS28320 bec8a2a0b40b9f730df32e129c326cfd 413 PRINTS PR01035 Tetracycline resistance protein signature 50 69 1.5E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS28320 bec8a2a0b40b9f730df32e129c326cfd 413 Gene3D G3DSA:1.20.1250.20 10 201 2.3E-22 T 29-03-2018 Y880_RS28320 bec8a2a0b40b9f730df32e129c326cfd 413 Gene3D G3DSA:1.20.1250.20 211 406 1.5E-10 T 29-03-2018 Y880_RS15905 3e6b342681132053db99f75e67154665 115 SUPERFAMILY SSF103481 34 113 2.09E-13 T 29-03-2018 Y880_RS15905 3e6b342681132053db99f75e67154665 115 Pfam PF00892 EamA-like transporter family 39 111 5.6E-9 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS15905 3e6b342681132053db99f75e67154665 115 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 1 115 29.102 T 29-03-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE Y880_RS27530 8efad9346bf9092739a6d91cd6df716f 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 9.8E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27530 8efad9346bf9092739a6d91cd6df716f 310 SUPERFAMILY SSF53850 88 298 5.07E-38 T 29-03-2018 Y880_RS27530 8efad9346bf9092739a6d91cd6df716f 310 SUPERFAMILY SSF46785 4 88 3.34E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27530 8efad9346bf9092739a6d91cd6df716f 310 Gene3D G3DSA:1.10.10.10 2 80 2.5E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27530 8efad9346bf9092739a6d91cd6df716f 310 Gene3D G3DSA:3.40.190.10 81 174 2.2E-13 T 29-03-2018 Y880_RS27530 8efad9346bf9092739a6d91cd6df716f 310 Gene3D G3DSA:3.40.190.10 175 266 1.4E-20 T 29-03-2018 Y880_RS27530 8efad9346bf9092739a6d91cd6df716f 310 Pfam PF03466 LysR substrate binding domain 88 294 1.9E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS02300 3c6366d997d3ca2690093d7a132d0b48 367 Pfam PF13489 Methyltransferase domain 145 309 6.8E-18 T 29-03-2018 Y880_RS02300 3c6366d997d3ca2690093d7a132d0b48 367 SUPERFAMILY SSF53335 140 324 5.63E-25 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS02300 3c6366d997d3ca2690093d7a132d0b48 367 Gene3D G3DSA:3.40.50.150 105 356 1.0E-17 T 29-03-2018 Y880_RS18095 4bc307864e50248cdf0bfeea69a41f77 188 Pfam PF02810 SEC-C motif 166 181 1.1E-5 T 29-03-2018 IPR004027 SEC-C motif Y880_RS18095 4bc307864e50248cdf0bfeea69a41f77 188 Gene3D G3DSA:3.10.450.50 162 184 2.4E-5 T 29-03-2018 Y880_RS18095 4bc307864e50248cdf0bfeea69a41f77 188 SUPERFAMILY SSF103642 165 182 2.78E-5 T 29-03-2018 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 Gene3D G3DSA:3.90.1150.10 1 181 1.6E-44 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 Gene3D G3DSA:3.90.1150.10 305 427 8.1E-18 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 Pfam PF00202 Aminotransferase class-III 32 394 8.0E-77 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 424 4.0E-192 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 105.701 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 Gene3D G3DSA:3.40.640.10 182 304 2.2E-45 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS18135 8f5a4b53820691c6984dee37afd8901b 427 SUPERFAMILY SSF53383 2 424 8.21E-135 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS26755 1d0db0760aea54d3d05f1a3a9deb1e49 121 Pfam PF01627 Hpt domain 24 99 4.2E-9 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS26755 1d0db0760aea54d3d05f1a3a9deb1e49 121 SUPERFAMILY SSF47226 9 111 1.19E-15 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS26755 1d0db0760aea54d3d05f1a3a9deb1e49 121 Gene3D G3DSA:1.20.120.160 1 111 8.4E-14 T 29-03-2018 Y880_RS16305 bb862786c70eed3ef6a9ee78685c02b9 302 Gene3D G3DSA:3.40.190.10 176 258 1.6E-25 T 29-03-2018 Y880_RS16305 bb862786c70eed3ef6a9ee78685c02b9 302 SUPERFAMILY SSF53850 89 291 1.99E-49 T 29-03-2018 Y880_RS16305 bb862786c70eed3ef6a9ee78685c02b9 302 Gene3D G3DSA:1.10.10.10 3 84 4.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16305 bb862786c70eed3ef6a9ee78685c02b9 302 Pfam PF03466 LysR substrate binding domain 88 288 2.9E-49 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS16305 bb862786c70eed3ef6a9ee78685c02b9 302 Gene3D G3DSA:3.40.190.10 88 175 4.8E-13 T 29-03-2018 Y880_RS16305 bb862786c70eed3ef6a9ee78685c02b9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 1.2E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16305 bb862786c70eed3ef6a9ee78685c02b9 302 SUPERFAMILY SSF46785 4 111 1.28E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06515 8997a4c3b92e48155b7dff1520acd46e 340 Gene3D G3DSA:1.20.58.340 151 269 3.0E-9 T 29-03-2018 Y880_RS06515 8997a4c3b92e48155b7dff1520acd46e 340 SUPERFAMILY SSF143865 13 272 7.85E-34 T 29-03-2018 Y880_RS06515 8997a4c3b92e48155b7dff1520acd46e 340 Gene3D G3DSA:3.30.460.20 5 149 7.1E-13 T 29-03-2018 Y880_RS06515 8997a4c3b92e48155b7dff1520acd46e 340 SUPERFAMILY SSF144083 275 336 2.48E-15 T 29-03-2018 Y880_RS06515 8997a4c3b92e48155b7dff1520acd46e 340 Gene3D G3DSA:1.20.58.340 270 338 1.1E-14 T 29-03-2018 Y880_RS06515 8997a4c3b92e48155b7dff1520acd46e 340 Pfam PF01544 CorA-like Mg2+ transporter protein 49 332 2.2E-50 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y880_RS14155 78ec3f0509b4ad40f1960ef45be23ad7 275 Pfam PF12697 Alpha/beta hydrolase family 25 251 3.3E-25 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS14155 78ec3f0509b4ad40f1960ef45be23ad7 275 SUPERFAMILY SSF53474 5 261 9.87E-65 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14155 78ec3f0509b4ad40f1960ef45be23ad7 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 1.7E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS14155 78ec3f0509b4ad40f1960ef45be23ad7 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 1.7E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS14155 78ec3f0509b4ad40f1960ef45be23ad7 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 1.7E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS14155 78ec3f0509b4ad40f1960ef45be23ad7 275 Gene3D G3DSA:3.40.50.1820 8 267 2.9E-51 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS00160 926b8d2b54005238510fc9121c5a4e0d 267 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 148 169 - T 29-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y880_RS00160 926b8d2b54005238510fc9121c5a4e0d 267 Pfam PF13145 PPIC-type PPIASE domain 92 223 2.9E-22 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 Y880_RS00160 926b8d2b54005238510fc9121c5a4e0d 267 SUPERFAMILY SSF54534 110 213 9.16E-25 T 29-03-2018 Y880_RS00160 926b8d2b54005238510fc9121c5a4e0d 267 Gene3D G3DSA:3.10.50.40 103 236 2.3E-29 T 29-03-2018 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 SUPERFAMILY SSF56645 33 235 2.88E-48 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 SUPERFAMILY SSF47203 237 410 9.99E-23 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 Gene3D G3DSA:1.10.540.10 18 134 3.8E-15 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 145 227 1.9E-9 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 Gene3D G3DSA:2.40.110.10 136 226 3.4E-20 T 29-03-2018 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 PIRSF PIRSF016578 14 406 1.0E-36 T 29-03-2018 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 43 126 1.0E-9 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 254 386 4.1E-22 T 29-03-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 21 411 1.3E-198 T 29-03-2018 IPR023922 Sulphate-starvation-induced SfnB Y880_RS08970 6f8db60b2176daa00020d65e058551a5 411 Gene3D G3DSA:1.20.140.10 227 388 2.1E-23 T 29-03-2018 Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 80 95 2.2E-23 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 46 62 2.2E-23 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 121 136 2.2E-23 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 3 20 2.2E-23 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 147 3.5E-40 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 SUPERFAMILY SSF52788 1 147 2.09E-47 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 Gene3D G3DSA:3.40.50.2300 1 153 9.0E-49 T 29-03-2018 Y880_RS12885 ead25dd55c9f6511795cbd4bd264d74d 154 SMART SM00226 1 149 1.8E-47 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily Y880_RS05750 ae939ccde6b9b2fa955444aa7c084380 295 Pfam PF03547 Membrane transport protein 134 285 2.5E-14 T 29-03-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Y880_RS17680 1457c7b9f93f707e65713080b12632be 302 Pfam PF13533 Biotin-lipoyl like 45 90 1.6E-16 T 29-03-2018 Y880_RS17680 1457c7b9f93f707e65713080b12632be 302 Pfam PF13437 HlyD family secretion protein 155 235 3.6E-10 T 29-03-2018 Y880_RS17680 1457c7b9f93f707e65713080b12632be 302 Gene3D G3DSA:2.40.50.100 158 288 7.6E-6 T 29-03-2018 Y880_RS17680 1457c7b9f93f707e65713080b12632be 302 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 228 7.7E-35 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS17680 1457c7b9f93f707e65713080b12632be 302 Gene3D G3DSA:2.40.50.100 45 117 2.5E-16 T 29-03-2018 Y880_RS17680 1457c7b9f93f707e65713080b12632be 302 SUPERFAMILY SSF111369 43 195 1.28E-22 T 29-03-2018 Y880_RS17680 1457c7b9f93f707e65713080b12632be 302 Gene3D G3DSA:1.10.287.470 130 157 0.019 T 29-03-2018 Y880_RS14075 dabac8a1ded9f3b106c2336baf59050b 484 Pfam PF02386 Cation transport protein 41 476 3.1E-56 T 29-03-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Y880_RS14075 dabac8a1ded9f3b106c2336baf59050b 484 PIRSF PIRSF006247 1 484 3.4E-168 T 29-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 Pfam PF02954 Bacterial regulatory protein, Fis family 438 478 2.0E-12 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 461 1.6E-8 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 461 481 1.6E-8 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 Gene3D G3DSA:1.10.10.60 389 481 3.7E-15 T 29-03-2018 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 Gene3D G3DSA:3.40.50.300 142 318 1.3E-28 T 29-03-2018 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 Gene3D G3DSA:1.10.8.60 319 388 1.9E-19 T 29-03-2018 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 SMART SM00382 166 310 8.6E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 SUPERFAMILY SSF46689 434 480 1.7E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 SUPERFAMILY SSF52540 146 387 4.57E-71 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 SUPERFAMILY SSF52172 3 188 8.08E-10 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 Pfam PF06490 Flagellar regulatory protein FleQ 6 123 5.0E-30 T 29-03-2018 IPR010518 Flagellar regulatory FleQ Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 Pfam PF00158 Sigma-54 interaction domain 146 313 3.8E-76 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS02345 8062ef7305f5987b36d342680dedd65b 490 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS24305 9ab44f34499dce410c9b4c89e92295c3 368 Gene3D G3DSA:3.50.50.60 313 368 5.3E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24305 9ab44f34499dce410c9b4c89e92295c3 368 SUPERFAMILY SSF51905 328 368 6.91E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24305 9ab44f34499dce410c9b4c89e92295c3 368 SUPERFAMILY SSF51905 4 222 6.91E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24305 9ab44f34499dce410c9b4c89e92295c3 368 Gene3D G3DSA:3.50.50.60 2 90 2.8E-6 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24305 9ab44f34499dce410c9b4c89e92295c3 368 Pfam PF01266 FAD dependent oxidoreductase 5 366 1.8E-65 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS24305 9ab44f34499dce410c9b4c89e92295c3 368 Gene3D G3DSA:3.30.9.10 91 181 3.1E-17 T 29-03-2018 Y880_RS24305 9ab44f34499dce410c9b4c89e92295c3 368 Gene3D G3DSA:3.30.9.10 182 312 1.4E-20 T 29-03-2018 Y880_RS00970 d20d09d110b41f0756329d6dee2a8c77 730 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 8 725 1.3E-272 T 29-03-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y880_RS00970 d20d09d110b41f0756329d6dee2a8c77 730 Pfam PF04185 Phosphoesterase family 51 436 3.7E-125 T 29-03-2018 IPR007312 Phosphoesterase GO:0016788 Y880_RS00970 d20d09d110b41f0756329d6dee2a8c77 730 Gene3D G3DSA:3.40.720.10 134 440 1.4E-20 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS00970 d20d09d110b41f0756329d6dee2a8c77 730 Pfam PF05506 Domain of unknown function (DUF756) 512 619 1.5E-14 T 29-03-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y880_RS00970 d20d09d110b41f0756329d6dee2a8c77 730 Pfam PF05506 Domain of unknown function (DUF756) 629 712 1.2E-17 T 29-03-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y880_RS23190 aad12833c84219f04c4381299e84a50b 139 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 29-03-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y880_RS23190 aad12833c84219f04c4381299e84a50b 139 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 8.0E-34 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23190 aad12833c84219f04c4381299e84a50b 139 Gene3D G3DSA:3.30.70.60 1 100 4.3E-30 T 29-03-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Y880_RS23190 aad12833c84219f04c4381299e84a50b 139 Pfam PF01250 Ribosomal protein S6 3 91 5.9E-27 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23190 aad12833c84219f04c4381299e84a50b 139 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.601 T 29-03-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y880_RS23190 aad12833c84219f04c4381299e84a50b 139 SUPERFAMILY SSF54995 1 102 9.55E-37 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 Pfam PF00263 Bacterial type II and III secretion system protein 345 505 1.1E-40 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 450 483 - T 29-03-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 392 407 7.7E-36 T 29-03-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 190 207 7.7E-36 T 29-03-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 483 502 7.7E-36 T 29-03-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 275 295 7.7E-36 T 29-03-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 358 377 7.7E-36 T 29-03-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 30 505 6.5E-162 T 29-03-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y880_RS05650 7508b2311efb3b833010f62144a4335d 600 Pfam PF03958 Bacterial type II/III secretion system short domain 178 272 1.0E-14 T 29-03-2018 IPR005644 NolW-like Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1155 23.398 T 29-03-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 SUPERFAMILY SSF52540 1 217 1.47E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 SUPERFAMILY SSF52540 1052 1138 1.47E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 Gene3D G3DSA:1.20.120.330 764 886 5.1E-4 T 29-03-2018 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 SMART SM00968 520 615 6.9E-10 T 29-03-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1146 4.8E-68 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1153 0.0 T 29-03-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 PIRSF PIRSF005719 1 1162 1.5E-267 T 29-03-2018 IPR024704 Structural maintenance of chromosomes protein Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 Gene3D G3DSA:3.40.50.300 902 1158 4.3E-31 T 29-03-2018 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 Gene3D G3DSA:3.40.50.300 1 183 4.0E-36 T 29-03-2018 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 Gene3D G3DSA:1.20.120.330 426 723 2.7E-5 T 29-03-2018 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 Gene3D G3DSA:1.20.5.50 259 403 0.043 T 29-03-2018 Y880_RS04610 ec738f5f7294f8bbfef8d706db33e767 1162 SUPERFAMILY SSF75553 469 662 1.83E-6 T 29-03-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 Gene3D G3DSA:3.40.190.10 1 106 1.5E-44 T 29-03-2018 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 4.9E-51 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 4.9E-51 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 4.9E-51 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 4.9E-51 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 4.9E-51 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 1.9E-111 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.396 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 29-03-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 1.3E-77 T 29-03-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 1.5E-23 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 SUPERFAMILY SSF54782 220 309 3.01E-28 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 Gene3D G3DSA:3.40.190.10 107 199 1.1E-37 T 29-03-2018 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 PIRSF PIRSF001438 1 311 5.9E-120 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 SUPERFAMILY SSF53850 4 219 8.19E-84 T 29-03-2018 Y880_RS24910 95be9a973d33135810556c123757bcd0 313 Gene3D G3DSA:3.30.160.40 221 304 4.0E-26 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS23600 57663cefa3f998a8d5735d5d26989416 345 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 318 5.7E-91 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 Y880_RS23600 57663cefa3f998a8d5735d5d26989416 345 Gene3D G3DSA:3.40.50.2000 1 149 3.8E-31 T 29-03-2018 Y880_RS23600 57663cefa3f998a8d5735d5d26989416 345 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 337 3.3E-162 T 29-03-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 Y880_RS23600 57663cefa3f998a8d5735d5d26989416 345 SUPERFAMILY SSF53756 1 338 2.41E-101 T 29-03-2018 Y880_RS23600 57663cefa3f998a8d5735d5d26989416 345 Gene3D G3DSA:3.40.50.2000 155 340 9.6E-48 T 29-03-2018 Y880_RS14115 d548aa8e9291155e55c9eea4c85e000c 351 Gene3D G3DSA:3.40.50.2000 1 169 4.1E-13 T 29-03-2018 Y880_RS14115 d548aa8e9291155e55c9eea4c85e000c 351 Pfam PF13692 Glycosyl transferases group 1 180 292 8.2E-18 T 29-03-2018 Y880_RS14115 d548aa8e9291155e55c9eea4c85e000c 351 Pfam PF13439 Glycosyltransferase Family 4 14 165 6.5E-15 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS14115 d548aa8e9291155e55c9eea4c85e000c 351 SUPERFAMILY SSF53756 1 327 6.63E-64 T 29-03-2018 Y880_RS14115 d548aa8e9291155e55c9eea4c85e000c 351 Gene3D G3DSA:3.40.50.2000 170 316 8.9E-31 T 29-03-2018 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 SUPERFAMILY SSF50331 163 248 5.32E-10 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 PIRSF PIRSF005763 2 252 2.0E-83 T 29-03-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 SUPERFAMILY SSF50331 113 181 1.65E-16 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 Pfam PF03459 TOBE domain 115 177 3.0E-16 T 29-03-2018 IPR005116 Transport-associated OB, type 1 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 Pfam PF03459 TOBE domain 186 247 1.5E-13 T 29-03-2018 IPR005116 Transport-associated OB, type 1 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 79 2.1E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 Gene3D G3DSA:1.10.10.10 2 104 6.6E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 Gene3D G3DSA:2.40.50.100 187 249 1.1E-11 T 29-03-2018 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 Gene3D G3DSA:2.40.50.100 112 180 5.4E-17 T 29-03-2018 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 113 179 4.6E-16 T 29-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 15 103 5.6E-31 T 29-03-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal Y880_RS29125 1a9ce458201c92f607aca7fdebd3bfb7 252 SUPERFAMILY SSF46785 11 99 2.79E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 Pfam PF02881 SRP54-type protein, helical bundle domain 162 227 4.3E-13 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 175 446 1.1E-109 T 29-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 SMART SM00963 150 231 2.5E-24 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 SUPERFAMILY SSF52540 244 446 6.76E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 SMART SM00382 245 392 2.0E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 Gene3D G3DSA:3.40.50.300 243 448 9.4E-40 T 29-03-2018 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 Gene3D G3DSA:1.20.120.140 145 242 2.1E-23 T 29-03-2018 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 SUPERFAMILY SSF47364 145 225 1.05E-20 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 Pfam PF00448 SRP54-type protein, GTPase domain 247 446 3.4E-77 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 174 447 62.412 T 29-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 SMART SM00962 246 447 6.2E-122 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS28520 2b603d9e069ea8702ba7248e86b16de9 452 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 420 433 - T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 SUPERFAMILY SSF46689 262 312 2.24E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 Gene3D G3DSA:1.10.10.60 264 313 5.1E-12 T 29-03-2018 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 306 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 Pfam PF14525 AraC-binding-like domain 14 167 1.9E-10 T 29-03-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 294 310 1.8E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 294 1.8E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 Gene3D G3DSA:1.10.10.60 207 263 2.6E-6 T 29-03-2018 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 SMART SM00342 225 310 1.5E-26 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS18595 89af461252cacf1e4f5af4d3f7930d76 316 Pfam PF12833 Helix-turn-helix domain 231 311 1.3E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 Gene3D G3DSA:1.10.10.10 1 70 4.1E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 SMART SM00345 12 71 3.3E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 6.5E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 5.2E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 5.2E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 SMART SM00866 92 231 1.9E-29 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 Gene3D G3DSA:3.40.1410.10 71 238 5.8E-34 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 SUPERFAMILY SSF46785 5 78 8.65E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 Pfam PF07702 UTRA domain 92 230 1.0E-37 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS14270 560f2fb4433ba7c34668749bd5b14351 238 SUPERFAMILY SSF64288 59 235 5.81E-41 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS20895 a3536f0ab02fa3328f9158e5ef1778bc 600 SUPERFAMILY SSF53649 237 533 2.06E-31 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS20895 a3536f0ab02fa3328f9158e5ef1778bc 600 Pfam PF00884 Sulfatase 239 529 3.0E-49 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS20895 a3536f0ab02fa3328f9158e5ef1778bc 600 Pfam PF08019 Domain of unknown function (DUF1705) 55 178 3.9E-6 T 29-03-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Y880_RS20895 a3536f0ab02fa3328f9158e5ef1778bc 600 Gene3D G3DSA:3.40.720.10 229 534 2.9E-24 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SUPERFAMILY SSF158472 195 245 3.79E-8 T 29-03-2018 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SUPERFAMILY SSF47384 360 443 7.46E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 257 373 9.9E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Gene3D G3DSA:3.30.450.20 237 370 1.0E-18 T 29-03-2018 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SMART SM00387 489 595 7.3E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SUPERFAMILY SSF55874 432 595 3.27E-46 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26105 029833b0e28a08857c2f24472086b305 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 540 5.1E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 581 594 5.1E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 557 575 5.1E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 554 5.1E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Gene3D G3DSA:1.10.287.130 371 437 2.8E-13 T 29-03-2018 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 491 594 1.1E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Gene3D G3DSA:3.30.565.10 438 595 2.6E-46 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Pfam PF00672 HAMP domain 195 244 2.7E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SMART SM00304 195 247 4.1E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Pfam PF16767 Sensor domain of alginate biosynthesis sensor protein KinB 42 158 6.4E-38 T 29-03-2018 IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SMART SM00388 375 443 2.3E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Pfam PF08448 PAS fold 264 370 8.9E-11 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 Pfam PF00512 His Kinase A (phospho-acceptor) domain 376 443 8.7E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SUPERFAMILY SSF55785 246 367 1.68E-13 T 29-03-2018 IPR000014 PAS domain Y880_RS26105 029833b0e28a08857c2f24472086b305 595 SMART SM00091 258 323 1.2E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS25780 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 31.922 T 29-03-2018 IPR033747 Class I PurE Y880_RS25780 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 SUPERFAMILY SSF52255 4 160 3.4E-67 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y880_RS25780 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 Gene3D G3DSA:3.40.50.7700 1 160 2.9E-65 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y880_RS25780 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 Pfam PF00731 AIR carboxylase 5 152 5.2E-64 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y880_RS25780 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 PIRSF PIRSF001338 1 161 2.8E-66 T 29-03-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 Y880_RS25780 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 SMART SM01001 3 154 3.4E-102 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y880_RS25780 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 1.4E-67 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y880_RS26580 a1bf89af156543d94337ad46555302db 135 Gene3D G3DSA:3.30.230.10 1 120 1.2E-30 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS26580 a1bf89af156543d94337ad46555302db 135 SUPERFAMILY SSF54211 6 115 3.54E-30 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS26580 a1bf89af156543d94337ad46555302db 135 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 10 113 6.6E-27 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y880_RS26580 a1bf89af156543d94337ad46555302db 135 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 29-03-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 Y880_RS26580 a1bf89af156543d94337ad46555302db 135 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 116 17.822 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y880_RS26580 a1bf89af156543d94337ad46555302db 135 Pfam PF00825 Ribonuclease P 6 113 2.0E-31 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y880_RS26580 a1bf89af156543d94337ad46555302db 135 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 16 92 4.0E-38 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y880_RS23955 90c37ff316e5a2670ca771799c3f5888 145 SUPERFAMILY SSF69500 1 144 1.57E-54 T 29-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain Y880_RS23955 90c37ff316e5a2670ca771799c3f5888 145 Gene3D G3DSA:3.50.80.10 1 145 4.0E-53 T 29-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain Y880_RS23955 90c37ff316e5a2670ca771799c3f5888 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 5.6E-52 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Y880_RS23955 90c37ff316e5a2670ca771799c3f5888 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.071 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Y880_RS23955 90c37ff316e5a2670ca771799c3f5888 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 1.9E-52 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF16124 RecQ zinc-binding 335 396 1.4E-20 T 29-03-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:1.10.10.10 613 657 8.0E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 SUPERFAMILY SSF47819 527 602 3.05E-22 T 29-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF00270 DEAD/DEAH box helicase 21 180 4.0E-19 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 SUPERFAMILY SSF52540 3 189 1.52E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:3.40.50.300 204 346 7.4E-28 T 29-03-2018 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:1.10.150.80 519 612 1.3E-25 T 29-03-2018 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00487 14 210 6.8E-31 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF00271 Helicase conserved C-terminal domain 219 322 4.5E-16 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 7 599 1.1E-245 T 29-03-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:3.40.50.300 1 200 6.4E-35 T 29-03-2018 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00490 242 323 4.6E-25 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 455 7.6E-154 T 29-03-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:1.10.10.10 347 516 1.0E-50 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF00570 HRDC domain 533 598 1.7E-22 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 SUPERFAMILY SSF52540 200 444 4.57E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00956 404 507 6.9E-47 T 29-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF09382 RQC domain 401 510 8.1E-36 T 29-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Y880_RS14805 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00341 528 608 4.2E-20 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 469 587 3.4E-34 T 29-03-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 SUPERFAMILY SSF47203 289 459 2.09E-47 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Gene3D G3DSA:2.40.110.10 164 275 3.8E-25 T 29-03-2018 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 43 158 4.2E-11 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Gene3D G3DSA:1.10.540.10 36 163 2.9E-15 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 33 3.7E-11 T 29-03-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 SUPERFAMILY SSF56645 38 281 2.62E-56 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 2.2E-17 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 3.0E-21 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS19270 541c77d077afb4cf11a25853a55c23e2 593 Gene3D G3DSA:1.20.140.10 298 467 1.3E-40 T 29-03-2018 Y880_RS01770 a970ce6c59f8619f987d9392b9ec1697 337 Gene3D G3DSA:3.40.47.10 5 186 2.0E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01770 a970ce6c59f8619f987d9392b9ec1697 337 SUPERFAMILY SSF53901 8 329 2.33E-57 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01770 a970ce6c59f8619f987d9392b9ec1697 337 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 242 328 3.1E-27 T 29-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS01770 a970ce6c59f8619f987d9392b9ec1697 337 Gene3D G3DSA:3.40.47.10 187 330 2.1E-31 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01770 a970ce6c59f8619f987d9392b9ec1697 337 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 188 4.0E-23 T 29-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 SUPERFAMILY SSF54523 281 320 3.14E-9 T 29-03-2018 Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 SUPERFAMILY SSF54523 43 103 3.14E-9 T 29-03-2018 Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 SUPERFAMILY SSF158544 104 218 2.46E-7 T 29-03-2018 Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 Pfam PF03934 Type II secretion system (T2SS), protein K 31 313 1.4E-66 T 29-03-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 Gene3D G3DSA:3.30.1300.30 27 147 2.2E-24 T 29-03-2018 Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 PIRSF PIRSF002786 1 321 1.0E-91 T 29-03-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 SUPERFAMILY SSF47781 218 272 3.78E-6 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS00075 8ed475f9af5beb74eaed993ac096a1dd 321 Gene3D G3DSA:1.10.40.60 221 279 3.2E-6 T 29-03-2018 Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 SUPERFAMILY SSF51215 75 177 1.44E-6 T 29-03-2018 Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 SMART SM00342 228 314 3.6E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 Pfam PF12833 Helix-turn-helix domain 234 316 2.1E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 Pfam PF14525 AraC-binding-like domain 25 192 6.3E-26 T 29-03-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 265 310 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 Gene3D G3DSA:1.10.10.60 202 261 3.7E-13 T 29-03-2018 Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 Gene3D G3DSA:1.10.10.60 262 318 4.3E-9 T 29-03-2018 Y880_RS09945 f4144e10be78808fc8eb80150a48c48f 318 SUPERFAMILY SSF46689 215 262 6.45E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 421 582 6.5E-44 T 29-03-2018 IPR000160 GGDEF domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 Gene3D G3DSA:3.30.70.270 419 592 2.3E-62 T 29-03-2018 Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 SUPERFAMILY SSF55073 430 585 7.22E-49 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 Pfam PF00990 Diguanylate cyclase, GGDEF domain 426 581 1.3E-48 T 29-03-2018 IPR000160 GGDEF domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 Gene3D G3DSA:3.30.450.20 282 418 8.0E-22 T 29-03-2018 Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 SUPERFAMILY SSF55785 291 412 5.64E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 Gene3D G3DSA:3.20.20.450 593 851 5.4E-94 T 29-03-2018 IPR001633 EAL domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 SMART SM00052 595 837 5.2E-106 T 29-03-2018 IPR001633 EAL domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 Pfam PF05228 CHASE4 domain 59 219 5.5E-18 T 29-03-2018 IPR007892 CHASE4 Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 SUPERFAMILY SSF141868 600 844 4.84E-85 T 29-03-2018 IPR001633 EAL domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 300 420 3.9E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 Pfam PF00563 EAL domain 602 832 6.8E-67 T 29-03-2018 IPR001633 EAL domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 SMART SM00267 414 585 1.8E-63 T 29-03-2018 IPR000160 GGDEF domain Y880_RS07535 5ef4aa61ec7419962a99aa2334ac7092 864 SMART SM00091 303 371 7.2E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS16620 b73b598ccd21c8184197dd2a1e27aa9b 173 Pfam PF01661 Macro domain 20 132 5.0E-43 T 29-03-2018 IPR002589 Macro domain Y880_RS16620 b73b598ccd21c8184197dd2a1e27aa9b 173 SMART SM00506 3 132 2.8E-50 T 29-03-2018 IPR002589 Macro domain Y880_RS16620 b73b598ccd21c8184197dd2a1e27aa9b 173 SUPERFAMILY SSF52949 3 167 2.52E-62 T 29-03-2018 Y880_RS16620 b73b598ccd21c8184197dd2a1e27aa9b 173 Gene3D G3DSA:3.40.220.10 1 169 2.0E-69 T 29-03-2018 Y880_RS20620 a845a9808bd6253b683a15ea92535c19 102 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 1.2E-36 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Y880_RS20620 a845a9808bd6253b683a15ea92535c19 102 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 1.1E-28 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Y880_RS20620 a845a9808bd6253b683a15ea92535c19 102 SUPERFAMILY SSF69754 1 95 2.09E-35 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Y880_RS20620 a845a9808bd6253b683a15ea92535c19 102 Gene3D G3DSA:3.30.160.100 1 96 6.5E-33 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Y880_RS25115 ddf28a033736e5547718d0645b4f0a68 136 SUPERFAMILY SSF46626 55 135 1.14E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25115 ddf28a033736e5547718d0645b4f0a68 136 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 57 133 2.0E-13 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25115 ddf28a033736e5547718d0645b4f0a68 136 Gene3D G3DSA:1.10.760.10 54 136 1.1E-9 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25115 ddf28a033736e5547718d0645b4f0a68 136 PRINTS PR00607 Class IE cytochrome C signature 108 120 1.5E-19 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25115 ddf28a033736e5547718d0645b4f0a68 136 PRINTS PR00607 Class IE cytochrome C signature 67 78 1.5E-19 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25115 ddf28a033736e5547718d0645b4f0a68 136 PRINTS PR00607 Class IE cytochrome C signature 123 134 1.5E-19 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25115 ddf28a033736e5547718d0645b4f0a68 136 PRINTS PR00607 Class IE cytochrome C signature 78 88 1.5E-19 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25275 43c52eadd3cb5144e8fb035d3e145056 213 SUPERFAMILY SSF53271 1 211 3.98E-50 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS25275 43c52eadd3cb5144e8fb035d3e145056 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 36.028 T 29-03-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS25275 43c52eadd3cb5144e8fb035d3e145056 213 Pfam PF00156 Phosphoribosyl transferase domain 44 159 6.6E-12 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y880_RS25275 43c52eadd3cb5144e8fb035d3e145056 213 Gene3D G3DSA:3.40.50.2020 1 193 2.5E-48 T 29-03-2018 Y880_RS25275 43c52eadd3cb5144e8fb035d3e145056 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 11 186 6.3E-62 T 29-03-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS06545 f78103f1661d20f171982ab9c0141716 184 Pfam PF13560 Helix-turn-helix domain 10 67 3.2E-8 T 29-03-2018 Y880_RS06545 f78103f1661d20f171982ab9c0141716 184 Gene3D G3DSA:1.10.10.60 9 35 6.4E-8 T 29-03-2018 Y880_RS06545 f78103f1661d20f171982ab9c0141716 184 Gene3D G3DSA:3.30.450.20 74 183 1.9E-5 T 29-03-2018 Y880_RS06545 f78103f1661d20f171982ab9c0141716 184 Gene3D G3DSA:3.30.1190.10 36 73 8.8E-6 T 29-03-2018 Y880_RS06545 f78103f1661d20f171982ab9c0141716 184 SUPERFAMILY SSF55785 69 128 3.05E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS06545 f78103f1661d20f171982ab9c0141716 184 SUPERFAMILY SSF47413 9 66 5.63E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS06545 f78103f1661d20f171982ab9c0141716 184 SMART SM00530 13 68 2.4E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS21595 73fd2ec8c93cf132f4c266c431a5a7d8 185 SUPERFAMILY SSF53271 14 183 2.1E-43 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS21595 73fd2ec8c93cf132f4c266c431a5a7d8 185 Gene3D G3DSA:3.40.50.2020 7 184 3.9E-34 T 29-03-2018 Y880_RS21595 73fd2ec8c93cf132f4c266c431a5a7d8 185 Pfam PF00156 Phosphoribosyl transferase domain 18 145 2.2E-24 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y880_RS20990 7c5c7fefd7a621d02125bf7df2692ad9 209 SUPERFAMILY SSF52980 1 209 1.34E-126 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y880_RS20990 7c5c7fefd7a621d02125bf7df2692ad9 209 Pfam PF08682 Putative endonuclease, protein of unknown function (DUF1780) 2 209 3.0E-131 T 29-03-2018 IPR014796 Protein of unknown function DUF1780, putative endonuclease Y880_RS20990 7c5c7fefd7a621d02125bf7df2692ad9 209 Gene3D G3DSA:3.40.1540.10 3 201 5.0E-87 T 29-03-2018 IPR014796 Protein of unknown function DUF1780, putative endonuclease Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 435 757 6.7E-154 T 29-03-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 SUPERFAMILY SSF51726 400 761 1.83E-120 T 29-03-2018 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 317 4.7E-118 T 29-03-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 Gene3D G3DSA:3.20.20.210 394 763 3.8E-131 T 29-03-2018 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 PIRSF PIRSF000382 1 765 0.0 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 Gene3D G3DSA:3.20.20.210 2 393 1.1E-148 T 29-03-2018 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 760 0.0 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 762 37.549 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y880_RS06800 b4c6c94a3ef76cab2b9e5f76a6777212 766 SUPERFAMILY SSF51726 3 398 4.45E-116 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.70.1440 683 781 3.0E-23 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 576 682 2.14E-27 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.70.1430 578 679 2.9E-18 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 Pfam PF00873 AcrB/AcrD/AcrF family 3 1040 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.2090.10 183 277 5.4E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82866 844 1040 3.01E-46 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 41 134 4.19E-25 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 563 580 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 632 646 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.4E-94 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 821 870 5.49E-25 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 683 734 5.49E-25 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1051 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:1.20.1640.10 838 1043 6.1E-40 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:1.20.1640.10 278 501 7.6E-49 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82866 299 499 2.75E-50 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 138 184 2.2E-28 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 277 333 2.2E-28 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.70.1430 40 142 3.9E-25 T 29-03-2018 Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82714 735 820 2.35E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09810 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82714 185 274 8.37E-21 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS12195 e974d072b4d876023c673ca9d6582e58 284 Gene3D G3DSA:1.10.10.10 2 90 7.6E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12195 e974d072b4d876023c673ca9d6582e58 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.0E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12195 e974d072b4d876023c673ca9d6582e58 284 Pfam PF03466 LysR substrate binding domain 96 282 1.2E-25 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12195 e974d072b4d876023c673ca9d6582e58 284 SUPERFAMILY SSF46785 7 116 1.68E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12195 e974d072b4d876023c673ca9d6582e58 284 SUPERFAMILY SSF53850 95 282 2.17E-26 T 29-03-2018 Y880_RS12195 e974d072b4d876023c673ca9d6582e58 284 Gene3D G3DSA:3.40.190.10 177 256 2.4E-12 T 29-03-2018 Y880_RS12195 e974d072b4d876023c673ca9d6582e58 284 Gene3D G3DSA:3.40.190.10 96 176 5.2E-15 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF109604 426 591 1.07E-13 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:3.30.70.260 693 781 7.0E-4 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF81301 8 181 3.0E-24 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF01842 ACT domain 816 873 1.6E-7 T 29-03-2018 IPR002912 ACT domain Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF55021 813 879 6.66E-11 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:1.10.3090.10 384 646 8.9E-39 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF01909 Nucleotidyltransferase domain 72 114 1.0E-7 T 29-03-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 PIRSF PIRSF006288 12 892 0.0 T 29-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:3.30.70.260 811 892 2.0E-11 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 897 345.024 T 29-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 SMART SM00471 457 604 1.7E-9 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:1.20.120.330 183 328 1.8E-26 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 36 885 0.0 T 29-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF08335 GlnD PII-uridylyltransferase 185 323 5.3E-37 T 29-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF81593 205 314 1.41E-12 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:3.30.460.10 26 178 2.7E-29 T 29-03-2018 Y880_RS16445 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF01966 HD domain 463 569 2.1E-10 T 29-03-2018 IPR006674 HD domain Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 SUPERFAMILY SSF88659 99 162 5.98E-10 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 Gene3D G3DSA:1.10.10.10 73 163 1.7E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 163 7.1E-13 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 SUPERFAMILY SSF88946 5 90 1.37E-12 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 Pfam PF04542 Sigma-70 region 2 8 75 6.2E-10 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 Gene3D G3DSA:1.10.1740.10 2 72 3.8E-14 T 29-03-2018 Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 Gene3D G3DSA:1.25.40.10 197 407 3.2E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS03665 b4dfd7f4ff03a42a4810772acee5b5bb 407 Pfam PF08281 Sigma-70, region 4 109 160 3.0E-7 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS26380 86dbde10d0b39c53a193a2df1f8b6270 397 Pfam PF11741 AMIN domain 32 129 5.7E-18 T 29-03-2018 IPR021731 AMIN domain Y880_RS26380 86dbde10d0b39c53a193a2df1f8b6270 397 SMART SM00646 217 375 1.2E-66 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y880_RS26380 86dbde10d0b39c53a193a2df1f8b6270 397 Gene3D G3DSA:3.40.630.40 152 383 9.3E-53 T 29-03-2018 Y880_RS26380 86dbde10d0b39c53a193a2df1f8b6270 397 SUPERFAMILY SSF53187 302 379 1.35E-51 T 29-03-2018 Y880_RS26380 86dbde10d0b39c53a193a2df1f8b6270 397 SUPERFAMILY SSF53187 155 251 1.35E-51 T 29-03-2018 Y880_RS26380 86dbde10d0b39c53a193a2df1f8b6270 397 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 157 375 1.6E-45 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 134 29.764 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 9.2E-13 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 9.2E-13 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 9.2E-13 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 131 7.3E-45 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 29-03-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 SUPERFAMILY SSF81330 13 127 1.7E-35 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 4 133 6.0E-48 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 Y880_RS21420 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 Gene3D G3DSA:1.20.5.220 118 135 9.5E-4 T 29-03-2018 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 Gene3D G3DSA:3.30.565.10 447 598 9.2E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 SUPERFAMILY SSF47384 366 442 1.9E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 SUPERFAMILY SSF103190 68 203 2.35E-19 T 29-03-2018 IPR029151 Periplasmic sensor domain-like Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 Pfam PF00512 His Kinase A (phospho-acceptor) domain 378 442 1.5E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 SMART SM00387 488 599 1.4E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 Gene3D G3DSA:1.10.287.130 339 442 4.1E-10 T 29-03-2018 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 Gene3D G3DSA:3.30.450.20 185 293 5.6E-9 T 29-03-2018 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 490 596 3.3E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 SMART SM00388 378 446 4.9E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 542 1.2E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 PRINTS PR00344 Bacterial sensor protein C-terminal signature 546 556 1.2E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 577 1.2E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 PIRSF PIRSF036431 4 605 7.5E-209 T 29-03-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 Pfam PF02743 Cache domain 48 276 2.6E-15 T 29-03-2018 IPR033479 Double Cache domain 1 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 Gene3D G3DSA:3.30.450.20 41 184 4.3E-19 T 29-03-2018 Y880_RS24415 c4e8535dd3c96141c2119c86fb42ecce 612 SUPERFAMILY SSF55874 437 595 1.28E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS04005 bd6b3feebce4a57654e084a5e78d223d 807 Pfam PF00924 Mechanosensitive ion channel 584 781 4.3E-42 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS04005 bd6b3feebce4a57654e084a5e78d223d 807 SUPERFAMILY SSF82689 700 792 4.18E-14 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y880_RS04005 bd6b3feebce4a57654e084a5e78d223d 807 SUPERFAMILY SSF50182 626 691 6.21E-16 T 29-03-2018 IPR010920 LSM domain Y880_RS04005 bd6b3feebce4a57654e084a5e78d223d 807 Gene3D G3DSA:2.30.30.60 642 692 3.7E-13 T 29-03-2018 Y880_RS04005 bd6b3feebce4a57654e084a5e78d223d 807 Gene3D G3DSA:3.30.70.100 698 787 1.6E-12 T 29-03-2018 Y880_RS04005 bd6b3feebce4a57654e084a5e78d223d 807 Pfam PF12607 Protein of unknown function (DUF3772) 140 200 4.3E-19 T 29-03-2018 IPR022249 Domain of unknown function DUF3772 Y880_RS04005 bd6b3feebce4a57654e084a5e78d223d 807 SUPERFAMILY SSF82861 540 624 3.92E-13 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y880_RS08925 930c6a25c223ad39cf12ed1eac32a574 297 Gene3D G3DSA:3.40.190.10 89 173 2.8E-11 T 29-03-2018 Y880_RS08925 930c6a25c223ad39cf12ed1eac32a574 297 Gene3D G3DSA:1.10.10.10 3 84 4.7E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08925 930c6a25c223ad39cf12ed1eac32a574 297 Gene3D G3DSA:3.40.190.10 174 261 4.7E-25 T 29-03-2018 Y880_RS08925 930c6a25c223ad39cf12ed1eac32a574 297 Pfam PF03466 LysR substrate binding domain 88 289 3.1E-45 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS08925 930c6a25c223ad39cf12ed1eac32a574 297 SUPERFAMILY SSF53850 90 291 1.16E-45 T 29-03-2018 Y880_RS08925 930c6a25c223ad39cf12ed1eac32a574 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 2.4E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08925 930c6a25c223ad39cf12ed1eac32a574 297 SUPERFAMILY SSF46785 5 87 1.87E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15460 8541d9a361557daa6553a515db549709 442 SUPERFAMILY SSF50182 188 255 1.18E-11 T 29-03-2018 IPR010920 LSM domain Y880_RS15460 8541d9a361557daa6553a515db549709 442 Gene3D G3DSA:2.30.30.60 205 255 8.9E-11 T 29-03-2018 Y880_RS15460 8541d9a361557daa6553a515db549709 442 Pfam PF00924 Mechanosensitive ion channel 146 399 3.5E-44 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 SUPERFAMILY SSF46785 4 115 7.17E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 Gene3D G3DSA:1.10.10.10 1 86 7.6E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 Pfam PF03466 LysR substrate binding domain 92 298 7.4E-46 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 Gene3D G3DSA:3.40.190.10 92 185 4.0E-22 T 29-03-2018 Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.7E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 Gene3D G3DSA:3.40.190.10 186 272 1.7E-17 T 29-03-2018 Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 SUPERFAMILY SSF53850 93 298 7.28E-41 T 29-03-2018 Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.8E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.8E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29145 6eab7eb8ee483abcc358318d3ff82416 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.8E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00955 25a9bd11504972f4f779fbed7b48dfa7 319 SUPERFAMILY SSF82549 1 312 3.4E-47 T 29-03-2018 Y880_RS00955 25a9bd11504972f4f779fbed7b48dfa7 319 Gene3D G3DSA:3.30.1180.10 170 313 3.1E-20 T 29-03-2018 Y880_RS00955 25a9bd11504972f4f779fbed7b48dfa7 319 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 313 1.9E-77 T 29-03-2018 IPR003797 DegV Y880_RS00955 25a9bd11504972f4f779fbed7b48dfa7 319 Gene3D G3DSA:3.40.50.10170 1 168 4.9E-27 T 29-03-2018 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SUPERFAMILY SSF88723 5 167 2.44E-52 T 29-03-2018 IPR029060 PIN domain-like Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SUPERFAMILY SSF53098 311 501 3.8E-55 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SMART SM00475 4 266 2.6E-114 T 29-03-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Gene3D G3DSA:3.40.50.1010 4 180 3.9E-63 T 29-03-2018 IPR029060 PIN domain-like Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Pfam PF01612 3'-5' exonuclease 313 501 1.1E-38 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 ProSitePatterns PS00447 DNA polymerase family A signature. 739 758 - T 29-03-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Gene3D G3DSA:3.30.420.10 302 526 7.2E-53 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 168 269 6.3E-27 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Gene3D G3DSA:1.10.150.20 181 265 8.3E-24 T 29-03-2018 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SUPERFAMILY SSF47807 168 288 1.14E-28 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 167 9.1E-51 T 29-03-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 TIGRFAM TIGR00593 pola: DNA polymerase I 6 913 5.7E-283 T 29-03-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SMART SM00474 312 501 1.1E-36 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Gene3D G3DSA:3.30.70.370 642 737 1.7E-17 T 29-03-2018 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Gene3D G3DSA:3.30.70.370 739 913 4.3E-54 T 29-03-2018 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SMART SM00279 170 205 6.1E-12 T 29-03-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SUPERFAMILY SSF56672 506 913 5.0E-160 T 29-03-2018 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 SMART SM00482 671 877 8.4E-119 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Pfam PF00476 DNA polymerase family A 539 911 2.7E-153 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 776 787 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 860 873 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 663 678 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 739 764 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 830 846 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 798 809 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 640 662 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 685 708 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 715 728 1.0E-77 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26150 5816e79fdd2fdfb0a1492fa303670bc5 913 Gene3D G3DSA:1.20.1060.10 527 641 2.0E-31 T 29-03-2018 Y880_RS17620 57dc78c58602fecb737f966ad846d65e 249 Pfam PF08241 Methyltransferase domain 41 128 1.2E-16 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS17620 57dc78c58602fecb737f966ad846d65e 249 SUPERFAMILY SSF53335 3 171 2.79E-29 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS17620 57dc78c58602fecb737f966ad846d65e 249 Gene3D G3DSA:3.40.50.150 4 224 1.1E-23 T 29-03-2018 Y880_RS03085 98b0918d303698c2d625fedff85e235e 276 PIRSF PIRSF037442 1 276 3.6E-91 T 29-03-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y880_RS03085 98b0918d303698c2d625fedff85e235e 276 Pfam PF12697 Alpha/beta hydrolase family 24 254 4.0E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS03085 98b0918d303698c2d625fedff85e235e 276 Gene3D G3DSA:3.40.50.1820 1 272 1.1E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03085 98b0918d303698c2d625fedff85e235e 276 SUPERFAMILY SSF53474 2 133 3.62E-28 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03085 98b0918d303698c2d625fedff85e235e 276 SUPERFAMILY SSF53474 168 272 3.62E-28 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 2.5E-8 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 SUPERFAMILY SSF54523 9 81 8.63E-11 T 29-03-2018 Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 Gene3D G3DSA:3.30.700.10 9 49 1.6E-5 T 29-03-2018 Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 4 149 5.8E-57 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 6.7E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 Gene3D G3DSA:3.55.40.10 50 149 1.7E-13 T 29-03-2018 Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 PRINTS PR00885 Bacterial general secretion pathway protein H signature 4 18 4.7E-6 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 PRINTS PR00885 Bacterial general secretion pathway protein H signature 19 33 4.7E-6 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 PRINTS PR00885 Bacterial general secretion pathway protein H signature 124 139 4.7E-6 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS00055 b0213e09aa05ff90d8a45ef7f1ce1b60 149 Pfam PF12019 Type II transport protein GspH 44 138 9.1E-5 T 29-03-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 Pfam PF00425 chorismate binding enzyme 182 435 2.7E-97 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 Gene3D G3DSA:3.60.120.10 56 451 4.9E-149 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 SUPERFAMILY SSF56322 5 444 1.44E-139 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 93 439 2.5E-114 T 29-03-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 Pfam PF04715 Anthranilate synthase component I, N terminal region 17 138 1.9E-15 T 29-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 PRINTS PR00095 Anthranilate synthase component I signature 392 406 3.3E-16 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 PRINTS PR00095 Anthranilate synthase component I signature 283 296 3.3E-16 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 PRINTS PR00095 Anthranilate synthase component I signature 297 310 3.3E-16 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS05870 43a25a946432ce9688541ecef8fd1015 453 PRINTS PR00095 Anthranilate synthase component I signature 377 391 3.3E-16 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 Gene3D G3DSA:1.10.287.950 301 521 3.1E-52 T 29-03-2018 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 Gene3D G3DSA:3.40.50.10600 4 130 4.2E-26 T 29-03-2018 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 279 308 8.4E-22 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 8.4E-22 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 8.4E-22 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 SUPERFAMILY SSF58104 241 521 4.58E-75 T 29-03-2018 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 111 3.7E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 SUPERFAMILY SSF55785 21 114 3.32E-26 T 29-03-2018 IPR000014 PAS domain Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 SMART SM00283 259 520 1.0E-80 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 Gene3D G3DSA:1.10.287.950 200 300 5.1E-4 T 29-03-2018 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 Pfam PF08447 PAS fold 31 112 2.8E-15 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS04830 306ed8220d7a3cf4286bf517345f2c2f 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 318 487 6.0E-47 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS21075 7e5b5c12476011e8bd66a34832f446ec 364 SUPERFAMILY SSF54373 219 306 4.19E-21 T 29-03-2018 Y880_RS21075 7e5b5c12476011e8bd66a34832f446ec 364 Gene3D G3DSA:3.50.50.60 1 175 4.7E-16 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21075 7e5b5c12476011e8bd66a34832f446ec 364 Pfam PF01266 FAD dependent oxidoreductase 4 345 1.4E-69 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS21075 7e5b5c12476011e8bd66a34832f446ec 364 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 5 349 1.1E-82 T 29-03-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 Y880_RS21075 7e5b5c12476011e8bd66a34832f446ec 364 Gene3D G3DSA:3.30.9.10 176 303 1.1E-37 T 29-03-2018 Y880_RS21075 7e5b5c12476011e8bd66a34832f446ec 364 SUPERFAMILY SSF51905 4 219 1.23E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21075 7e5b5c12476011e8bd66a34832f446ec 364 SUPERFAMILY SSF51905 306 360 1.23E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 SUPERFAMILY SSF53383 22 425 1.63E-140 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 PIRSF PIRSF000521 172 425 5.0E-41 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 PIRSF PIRSF000521 124 157 0.64 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 PIRSF PIRSF000521 25 129 0.0024 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 Pfam PF00202 Aminotransferase class-III 18 421 1.0E-136 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 Gene3D G3DSA:3.40.640.10 173 306 1.9E-48 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 Gene3D G3DSA:3.90.1150.10 307 426 1.6E-30 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 Gene3D G3DSA:3.90.1150.10 1 154 1.4E-44 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 10 421 3.7E-162 T 29-03-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 Y880_RS27945 ee753a3aa9abb1fcfca8031d7405d04a 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS25920 b2eaeb1407db3dd5ee7587cef8700882 460 Gene3D G3DSA:3.40.50.2000 258 420 2.5E-25 T 29-03-2018 Y880_RS25920 b2eaeb1407db3dd5ee7587cef8700882 460 Pfam PF00534 Glycosyl transferases group 1 268 415 2.6E-21 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS25920 b2eaeb1407db3dd5ee7587cef8700882 460 SUPERFAMILY SSF53756 14 411 4.93E-41 T 29-03-2018 Y880_RS18400 a7bb8974a8556c8be1d4c715258bdd61 238 SMART SM00448 1 119 1.3E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18400 a7bb8974a8556c8be1d4c715258bdd61 238 Gene3D G3DSA:3.40.50.2300 1 131 2.8E-31 T 29-03-2018 Y880_RS18400 a7bb8974a8556c8be1d4c715258bdd61 238 Pfam PF00072 Response regulator receiver domain 3 119 7.5E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18400 a7bb8974a8556c8be1d4c715258bdd61 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 6.3E-19 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS18400 a7bb8974a8556c8be1d4c715258bdd61 238 Gene3D G3DSA:1.10.10.10 132 237 6.1E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18400 a7bb8974a8556c8be1d4c715258bdd61 238 SUPERFAMILY SSF52172 1 180 8.09E-32 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS18400 a7bb8974a8556c8be1d4c715258bdd61 238 SMART SM00862 155 231 1.3E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 108 140 4.0E-11 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 SUPERFAMILY SSF57716 108 145 2.71E-10 T 29-03-2018 Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 25 147 31.087 T 29-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 111 135 - T 29-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 PRINTS PR00618 DksA/TraR zinc finger signature 111 122 7.6E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 PRINTS PR00618 DksA/TraR zinc finger signature 123 135 7.6E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 29 137 7.6E-52 T 29-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y880_RS22090 0e7c1ab49f2658f52944309cbfb9f33f 148 SUPERFAMILY SSF109635 11 106 6.8E-34 T 29-03-2018 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 PRINTS PR00605 Class IC cytochrome C signature 322 333 2.6E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 PRINTS PR00605 Class IC cytochrome C signature 375 397 2.6E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 Gene3D G3DSA:1.10.760.10 11 141 4.8E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 Gene3D G3DSA:1.10.760.10 155 305 2.8E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 Pfam PF00034 Cytochrome c 30 127 2.2E-5 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 PIRSF PIRSF000018 2 432 1.4E-167 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 313 397 8.6E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 SUPERFAMILY SSF46626 315 417 5.3E-26 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 SUPERFAMILY SSF46626 176 293 1.03E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 SUPERFAMILY SSF46626 19 152 1.4E-23 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS08670 60ff1b39eef21c848830f5054053bac3 439 Gene3D G3DSA:1.10.760.10 306 427 1.9E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 191 2.5E-73 T 29-03-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 Gene3D G3DSA:1.20.5.510 4 33 3.6E-14 T 29-03-2018 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 SUPERFAMILY SSF50022 30 190 1.52E-44 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 Gene3D G3DSA:2.102.10.10 34 197 5.9E-43 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 163 175 2.2E-9 T 29-03-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 150 162 2.2E-9 T 29-03-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 2.2E-9 T 29-03-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 2 40 5.4E-12 T 29-03-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Y880_RS20460 2a5a290983f41318407d5891d4572cfc 197 Pfam PF00355 Rieske [2Fe-2S] domain 114 178 2.4E-10 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 SUPERFAMILY SSF51215 22 153 6.54E-22 T 29-03-2018 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 Pfam PF02311 AraC-like ligand binding domain 12 150 4.6E-27 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 SMART SM00342 189 272 2.9E-28 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 SUPERFAMILY SSF46689 176 223 4.39E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 Pfam PF12833 Helix-turn-helix domain 195 274 7.2E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 SUPERFAMILY SSF46689 225 274 4.3E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 Gene3D G3DSA:2.60.120.10 13 120 5.4E-9 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS05135 381b24995115cfce440107af087c8fb2 274 Gene3D G3DSA:1.10.10.60 121 225 6.8E-15 T 29-03-2018 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 Gene3D G3DSA:1.10.10.60 226 274 9.4E-13 T 29-03-2018 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 6.2E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS05135 381b24995115cfce440107af087c8fb2 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 6.2E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS22030 b3b9c3f4ffd3076fcdaa79ec463a4e39 115 SUPERFAMILY SSF50022 10 114 3.01E-25 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS22030 b3b9c3f4ffd3076fcdaa79ec463a4e39 115 Gene3D G3DSA:2.102.10.10 4 115 2.7E-22 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS22030 b3b9c3f4ffd3076fcdaa79ec463a4e39 115 Pfam PF00355 Rieske [2Fe-2S] domain 11 94 4.1E-11 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 PIRSF PIRSF036893 4 189 8.1E-56 T 29-03-2018 IPR022271 Lipocalin, ApoD type Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 Pfam PF08212 Lipocalin-like domain 34 179 9.0E-62 T 29-03-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 PRINTS PR01171 Bacterial lipocalin signature 170 180 2.1E-10 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 PRINTS PR01171 Bacterial lipocalin signature 143 154 2.1E-10 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 PRINTS PR01171 Bacterial lipocalin signature 51 67 2.1E-10 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 PRINTS PR01171 Bacterial lipocalin signature 34 48 2.1E-10 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 ProSitePatterns PS00213 Lipocalin signature. 35 46 - T 29-03-2018 IPR022272 Lipocalin family conserved site Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 Gene3D G3DSA:2.40.128.20 5 183 3.2E-38 T 29-03-2018 IPR012674 Calycin Y880_RS24095 8b42ab465ccde8b55f8e1960dfa610d4 189 SUPERFAMILY SSF50814 18 183 2.03E-45 T 29-03-2018 IPR012674 Calycin Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 ProSitePatterns PS01047 Heavy-metal-associated domain. 13 42 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 ProSitePatterns PS01047 Heavy-metal-associated domain. 79 108 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF55008 75 145 2.09E-20 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Gene3D G3DSA:3.30.70.100 75 142 1.3E-23 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Pfam PF00702 haloacid dehalogenase-like hydrolase 484 699 5.8E-42 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF81653 289 386 3.27E-26 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Pfam PF00403 Heavy-metal-associated domain 11 69 4.3E-16 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Pfam PF00403 Heavy-metal-associated domain 77 136 2.2E-15 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Gene3D G3DSA:3.30.70.100 3 74 2.7E-20 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 486 500 6.9E-23 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 708 720 6.9E-23 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 685 704 6.9E-23 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 336 350 6.9E-23 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 632 642 6.9E-23 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00943 Copper-transporting ATPase signature 469 484 4.8E-13 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00943 Copper-transporting ATPase signature 276 294 4.8E-13 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00943 Copper-transporting ATPase signature 409 423 4.8E-13 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00943 Copper-transporting ATPase signature 206 225 4.8E-13 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00943 Copper-transporting ATPase signature 662 679 4.8E-13 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00943 Copper-transporting ATPase signature 89 103 4.8E-13 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 PRINTS PR00943 Copper-transporting ATPase signature 256 275 4.8E-13 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Gene3D G3DSA:3.40.1110.10 498 647 1.5E-36 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Gene3D G3DSA:1.20.1110.10 233 497 3.7E-51 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Gene3D G3DSA:1.20.1110.10 648 786 2.0E-35 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 202 788 3.8E-179 T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 221 787 8.7E-192 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF56784 540 785 1.43E-59 T 29-03-2018 IPR023214 HAD-like domain Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF56784 485 504 1.43E-59 T 29-03-2018 IPR023214 HAD-like domain Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 488 494 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 259 765 7.6E-87 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF81665 734 762 1.05E-15 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF81665 257 286 1.05E-15 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF81665 387 480 1.05E-15 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 10 70 6.3E-9 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 76 137 5.8E-11 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 ProSitePatterns PS01229 Hypothetical cof family signature 2. 685 707 - T 29-03-2018 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 SUPERFAMILY SSF55008 6 71 4.71E-18 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS17830 8448405c6ff0f4f24dee0b1fcd63c4c5 792 Pfam PF00122 E1-E2 ATPase 287 466 5.0E-56 T 29-03-2018 Y880_RS23110 348272fdea833b8360d27a71981dafe9 399 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 7 399 51.346 T 29-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS23110 348272fdea833b8360d27a71981dafe9 399 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 10 398 4.8E-155 T 29-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS23110 348272fdea833b8360d27a71981dafe9 399 SUPERFAMILY SSF54675 5 139 5.3E-42 T 29-03-2018 Y880_RS23110 348272fdea833b8360d27a71981dafe9 399 SUPERFAMILY SSF51690 122 397 2.35E-91 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS23110 348272fdea833b8360d27a71981dafe9 399 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 171 398 1.7E-88 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y880_RS23110 348272fdea833b8360d27a71981dafe9 399 PIRSF PIRSF000484 1 383 2.1E-64 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y880_RS23110 348272fdea833b8360d27a71981dafe9 399 Gene3D G3DSA:3.20.140.10 4 399 9.2E-105 T 29-03-2018 Y880_RS16570 2953aa57f4ccda3f7068d480836b5a55 288 Gene3D G3DSA:3.20.20.410 2 267 8.9E-67 T 29-03-2018 IPR002763 Protein of unknown function DUF72 Y880_RS16570 2953aa57f4ccda3f7068d480836b5a55 288 SUPERFAMILY SSF117396 5 265 1.7E-69 T 29-03-2018 IPR002763 Protein of unknown function DUF72 Y880_RS16570 2953aa57f4ccda3f7068d480836b5a55 288 Pfam PF01904 Protein of unknown function DUF72 23 261 4.2E-52 T 29-03-2018 IPR002763 Protein of unknown function DUF72 Y880_RS01730 77366ff9cbc4a5ee0aade4d25cefa41b 125 SUPERFAMILY SSF47226 13 95 3.53E-16 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS01730 77366ff9cbc4a5ee0aade4d25cefa41b 125 Pfam PF01627 Hpt domain 33 98 2.5E-12 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS01730 77366ff9cbc4a5ee0aade4d25cefa41b 125 Gene3D G3DSA:1.20.120.160 5 120 5.6E-16 T 29-03-2018 Y880_RS18980 f56bdb493d3b2fff30d70ebd1dd1cfd1 296 SUPERFAMILY SSF46785 3 108 2.44E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18980 f56bdb493d3b2fff30d70ebd1dd1cfd1 296 Pfam PF03466 LysR substrate binding domain 92 292 2.1E-35 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS18980 f56bdb493d3b2fff30d70ebd1dd1cfd1 296 SUPERFAMILY SSF53850 92 294 1.59E-34 T 29-03-2018 Y880_RS18980 f56bdb493d3b2fff30d70ebd1dd1cfd1 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 5.7E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS18980 f56bdb493d3b2fff30d70ebd1dd1cfd1 296 Gene3D G3DSA:3.40.190.10 179 264 4.7E-20 T 29-03-2018 Y880_RS18980 f56bdb493d3b2fff30d70ebd1dd1cfd1 296 Gene3D G3DSA:3.40.190.10 93 178 3.0E-14 T 29-03-2018 Y880_RS18980 f56bdb493d3b2fff30d70ebd1dd1cfd1 296 Gene3D G3DSA:1.10.10.10 4 80 2.8E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 48 605 2.1E-157 T 29-03-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 Pfam PF03958 Bacterial type II/III secretion system short domain 206 271 3.3E-10 T 29-03-2018 IPR005644 NolW-like Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 Pfam PF03958 Bacterial type II/III secretion system short domain 277 352 4.3E-13 T 29-03-2018 IPR005644 NolW-like Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 Pfam PF03958 Bacterial type II/III secretion system short domain 141 200 2.0E-8 T 29-03-2018 IPR005644 NolW-like Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 Pfam PF00263 Bacterial type II and III secretion system protein 429 597 3.0E-52 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 561 579 5.2E-38 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 584 598 5.2E-38 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 460 470 5.2E-38 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 352 362 5.2E-38 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS06490 392d7f1a1977b1da558e956503cf3f57 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 425 449 5.2E-38 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 SUPERFAMILY SSF46785 5 73 5.54E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 SMART SM00345 12 69 1.8E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 Gene3D G3DSA:1.10.10.10 3 68 3.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 8.9E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 8.9E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 SUPERFAMILY SSF64288 57 232 1.43E-44 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 69 3.1E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 SMART SM00866 90 229 1.3E-33 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 Gene3D G3DSA:3.40.1410.10 69 235 3.7E-37 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS11550 391d2b014a1181bc977ccd04845ad314 239 Pfam PF07702 UTRA domain 90 227 4.9E-36 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS29770 7c3409f527b9c1f2ec8bb6c18745363b 66 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 35 59 - T 29-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Y880_RS29770 7c3409f527b9c1f2ec8bb6c18745363b 66 PRINTS PR00618 DksA/TraR zinc finger signature 47 59 1.3E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y880_RS29770 7c3409f527b9c1f2ec8bb6c18745363b 66 PRINTS PR00618 DksA/TraR zinc finger signature 35 46 1.3E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y880_RS29770 7c3409f527b9c1f2ec8bb6c18745363b 66 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 33 65 1.2E-13 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y880_RS29770 7c3409f527b9c1f2ec8bb6c18745363b 66 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 64 6.2E-17 T 29-03-2018 IPR012783 Zinc finger, C4 DksA/TraR-type Y880_RS29770 7c3409f527b9c1f2ec8bb6c18745363b 66 SUPERFAMILY SSF57716 35 65 3.42E-7 T 29-03-2018 Y880_RS20760 d5643bd81262b7e533e468ee0da98d18 533 Pfam PF09909 Uncharacterized protein conserved in bacteria (DUF2138) 8 530 2.8E-249 T 29-03-2018 IPR018671 Protein of unknown function DUF2138 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Pfam PF00158 Sigma-54 interaction domain 208 374 1.7E-58 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:1.10.10.60 462 515 0.0016 T 29-03-2018 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Pfam PF01842 ACT domain 3 64 1.9E-8 T 29-03-2018 IPR002912 ACT domain Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:1.10.8.60 383 452 1.4E-21 T 29-03-2018 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:3.30.70.260 1 80 2.1E-9 T 29-03-2018 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 421 430 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 SMART SM00382 227 372 1.2E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF55785 84 142 3.66E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 SMART SM00091 82 148 9.6E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF46689 459 514 1.48E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 231 244 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 469 515 1.7E-21 T 29-03-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:3.30.450.20 81 210 5.0E-10 T 29-03-2018 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF55021 2 72 2.33E-9 T 29-03-2018 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:3.40.50.300 211 380 8.4E-19 T 29-03-2018 Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF52540 207 449 4.9E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01125 d8778b5dafb59de1d5bcca8931238f78 519 Pfam PF00989 PAS fold 83 140 1.5E-6 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 SUPERFAMILY SSF47323 639 898 1.7E-70 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 51 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 Pfam PF08264 Anticodon-binding domain of tRNA 671 823 1.3E-43 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 885 947 1.6E-19 T 29-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 Gene3D G3DSA:1.10.730.10 628 815 3.5E-56 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 930 0.0 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 SUPERFAMILY SSF52374 606 638 2.5E-137 T 29-03-2018 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 SUPERFAMILY SSF52374 1 189 2.5E-137 T 29-03-2018 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 SUPERFAMILY SSF52374 361 568 2.5E-137 T 29-03-2018 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 SUPERFAMILY SSF46589 883 947 9.94E-18 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 628 1.2E-219 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 SUPERFAMILY SSF50677 188 362 2.35E-59 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 PRINTS PR00986 Valyl-tRNA synthetase signature 233 250 1.1E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 PRINTS PR00986 Valyl-tRNA synthetase signature 466 487 1.1E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 PRINTS PR00986 Valyl-tRNA synthetase signature 366 379 1.1E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 PRINTS PR00986 Valyl-tRNA synthetase signature 497 515 1.1E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 PRINTS PR00986 Valyl-tRNA synthetase signature 33 44 1.1E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 948 16.171 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 Gene3D G3DSA:1.10.287.380 876 946 2.2E-26 T 29-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Y880_RS17380 ac36c968ee70eedd57a1e998a331e5c3 950 Gene3D G3DSA:3.40.50.620 2 627 9.7E-139 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS18375 c95669093205606346b027755afda3a3 297 Gene3D G3DSA:3.40.190.10 18 124 3.3E-12 T 29-03-2018 Y880_RS18375 c95669093205606346b027755afda3a3 297 Gene3D G3DSA:3.40.190.10 131 251 7.9E-8 T 29-03-2018 Y880_RS18375 c95669093205606346b027755afda3a3 297 SUPERFAMILY SSF53850 27 245 6.42E-35 T 29-03-2018 Y880_RS18375 c95669093205606346b027755afda3a3 297 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 245 5.4E-17 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 475 494 9.3E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 496 513 9.3E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 449 465 9.3E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 327 344 9.3E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 401 412 9.3E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 SUPERFAMILY SSF53474 8 300 3.6E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 Pfam PF00561 alpha/beta hydrolase fold 37 121 7.2E-17 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 Gene3D G3DSA:3.40.50.1820 5 306 1.3E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 462 490 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 SUPERFAMILY SSF51735 321 587 8.92E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 Pfam PF00106 short chain dehydrogenase 326 516 3.6E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 401 412 4.1E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 455 463 4.1E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 475 494 4.1E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14695 1589c28909c482efcd1339e29d572e65 592 Gene3D G3DSA:3.40.50.720 307 590 2.6E-57 T 29-03-2018 Y880_RS23595 bcd2f15890a9b4a673e3fc271e3390ff 355 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 296 8.3E-114 T 29-03-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 Y880_RS23595 bcd2f15890a9b4a673e3fc271e3390ff 355 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 75 314 3.4E-85 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 Y880_RS23595 bcd2f15890a9b4a673e3fc271e3390ff 355 SUPERFAMILY SSF53756 1 348 2.51E-84 T 29-03-2018 Y880_RS23595 bcd2f15890a9b4a673e3fc271e3390ff 355 Gene3D G3DSA:3.40.50.2000 166 353 2.3E-43 T 29-03-2018 Y880_RS23595 bcd2f15890a9b4a673e3fc271e3390ff 355 Gene3D G3DSA:3.40.50.2000 1 163 8.9E-41 T 29-03-2018 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 Pfam PF01564 Spermine/spermidine synthase domain 57 236 6.7E-63 T 29-03-2018 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 Gene3D G3DSA:2.30.140.10 2 54 1.0E-14 T 29-03-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 78 91 - T 29-03-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 Gene3D G3DSA:3.40.50.150 55 283 3.8E-45 T 29-03-2018 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 2 281 39.997 T 29-03-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 TIGRFAM TIGR00417 speE: spermidine synthase 4 275 9.8E-107 T 29-03-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 Pfam PF17284 Spermidine synthase tetramerisation domain 10 54 6.8E-15 T 29-03-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS05500 67096b0a38e9b108e53e09100a4c6013 286 SUPERFAMILY SSF53335 3 281 2.26E-89 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 154 175 0.077 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 86 108 0.12 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 63 85 2.1E-4 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 131 153 0.0073 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 200 222 6.7E-6 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 40 60 0.039 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 224 245 0.32 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 109 124 0.88 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 269 291 0.038 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF02493 MORN repeat 177 199 2.8E-4 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SUPERFAMILY SSF52129 392 530 6.45E-6 T 29-03-2018 IPR029030 Caspase-like domain Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Gene3D G3DSA:3.40.50.1460 352 545 1.2E-22 T 29-03-2018 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Pfam PF01650 Peptidase C13 family 342 547 1.2E-43 T 29-03-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SUPERFAMILY SSF82185 35 122 1.83E-20 T 29-03-2018 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SUPERFAMILY SSF82185 127 248 9.68E-25 T 29-03-2018 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Gene3D G3DSA:2.20.110.10 30 89 8.6E-12 T 29-03-2018 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Gene3D G3DSA:2.20.110.10 161 229 3.0E-17 T 29-03-2018 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Gene3D G3DSA:2.20.110.10 230 308 6.3E-13 T 29-03-2018 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 Gene3D G3DSA:2.20.110.10 90 160 1.9E-12 T 29-03-2018 Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 152 173 6.6 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 129 150 6.6 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 244 265 21.0 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 84 105 0.56 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 38 59 4.0 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 61 82 13.0 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 175 196 3.1 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 107 128 1.5 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 198 219 4.1E-5 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SMART SM00698 267 288 8.0 T 29-03-2018 IPR003409 MORN motif Y880_RS18325 b1f40edddb13b48da17e76879484470f 579 SUPERFAMILY SSF82185 220 303 5.62E-13 T 29-03-2018 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 SUPERFAMILY SSF58104 252 561 1.57E-79 T 29-03-2018 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 426 455 2.7E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 424 2.7E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 2.7E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 320 349 2.7E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 SMART SM00283 299 560 7.6E-79 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 SMART SM01049 45 136 4.3E-26 T 29-03-2018 IPR033480 Single Cache domain 2 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 Gene3D G3DSA:1.10.287.950 341 561 4.0E-52 T 29-03-2018 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 Gene3D G3DSA:1.10.287.950 198 340 3.0E-10 T 29-03-2018 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 344 526 4.5E-42 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 SMART SM00304 230 284 6.5E-14 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 Pfam PF17200 Single Cache domain 2 51 196 3.3E-25 T 29-03-2018 IPR033480 Single Cache domain 2 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 Pfam PF00672 HAMP domain 231 280 6.1E-11 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10685 17a2d9c8b3f63c51c48c9e7c811b43ba 561 Gene3D G3DSA:3.30.450.20 30 197 6.0E-38 T 29-03-2018 Y880_RS14690 a02b0854c24c7028e5a5c86858c0339a 291 SUPERFAMILY SSF55920 231 268 2.49E-21 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS14690 a02b0854c24c7028e5a5c86858c0339a 291 SUPERFAMILY SSF55920 7 204 2.49E-21 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS14690 a02b0854c24c7028e5a5c86858c0339a 291 Pfam PF00557 Metallopeptidase family M24 15 262 5.2E-24 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS14690 a02b0854c24c7028e5a5c86858c0339a 291 Gene3D G3DSA:3.90.230.10 7 278 5.4E-26 T 29-03-2018 Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 Gene3D G3DSA:1.10.10.60 264 316 4.2E-13 T 29-03-2018 Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 SMART SM00342 226 309 4.4E-26 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 SUPERFAMILY SSF52317 5 190 1.67E-46 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 263 305 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 Gene3D G3DSA:3.40.50.880 1 194 2.8E-43 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 SUPERFAMILY SSF46689 262 310 8.51E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 Pfam PF12833 Helix-turn-helix domain 232 309 1.2E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 Gene3D G3DSA:1.10.10.60 195 263 7.0E-6 T 29-03-2018 Y880_RS25595 7130cb56a7bae5d81bba8c5d795f7cae 336 Pfam PF01965 DJ-1/PfpI family 22 171 8.7E-14 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS15200 e7edc1714465531caff5aa11f3a7f7e3 365 Gene3D G3DSA:3.40.50.970 2 351 1.1E-83 T 29-03-2018 Y880_RS15200 e7edc1714465531caff5aa11f3a7f7e3 365 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 10 350 2.6E-141 T 29-03-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Y880_RS15200 e7edc1714465531caff5aa11f3a7f7e3 365 Pfam PF00676 Dehydrogenase E1 component 38 323 1.1E-80 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 Y880_RS15200 e7edc1714465531caff5aa11f3a7f7e3 365 SUPERFAMILY SSF52518 30 352 2.36E-96 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS03670 af62ddaf4c4beaa5a49607219a5c268b 132 Gene3D G3DSA:1.20.1250.20 10 132 3.4E-10 T 29-03-2018 Y880_RS03670 af62ddaf4c4beaa5a49607219a5c268b 132 SUPERFAMILY SSF103473 9 130 8.89E-13 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS19890 d094d96595081dd209bcbca7d8734c40 427 Gene3D G3DSA:3.40.50.880 26 320 1.5E-6 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS19890 d094d96595081dd209bcbca7d8734c40 427 Pfam PF14258 Domain of unknown function (DUF4350) 44 113 3.9E-13 T 29-03-2018 IPR025646 Domain of unknown function DUF4350 Y880_RS05590 71ae2168876ff05ddbc76cda69aaa7d0 144 Pfam PF09621 Type III secretion system regulator (LcrR) 3 140 7.5E-71 T 29-03-2018 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 Y880_RS05590 71ae2168876ff05ddbc76cda69aaa7d0 144 TIGRFAM TIGR02572 LcrR: type III secretion system regulator LcrR 3 140 7.0E-72 T 29-03-2018 IPR013405 Type III secretion system regulator, LcrR Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Gene3D G3DSA:3.60.20.10 15 437 3.6E-138 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Gene3D G3DSA:2.160.20.60 1211 1473 2.0E-92 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Gene3D G3DSA:3.20.20.70 779 1206 1.4E-140 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Gene3D G3DSA:3.20.20.70 438 778 7.1E-76 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 SUPERFAMILY SSF69336 1212 1466 6.54E-87 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 SUPERFAMILY SSF56235 15 432 5.58E-143 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Pfam PF00310 Glutamine amidotransferases class-II 15 428 3.2E-173 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 SUPERFAMILY SSF51395 445 1187 4.08E-250 T 29-03-2018 Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Pfam PF01645 Conserved region in glutamate synthase 792 1155 1.2E-148 T 29-03-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Pfam PF04898 Glutamate synthase central domain 458 736 1.2E-100 T 29-03-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 Y880_RS23735 a4eb1c36807201df2809137ebad74614 1481 Pfam PF01493 GXGXG motif 1236 1422 3.0E-77 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 11 332 6.7E-118 T 29-03-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 25 92 2.9E-22 T 29-03-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Gene3D G3DSA:2.160.10.10 172 209 4.5E-9 T 29-03-2018 Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 SUPERFAMILY SSF51161 35 320 2.51E-80 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 12 329 36.371 T 29-03-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 109 137 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 149 183 1.4E-6 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 201 219 6.8E-4 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 260 5.3E-6 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Gene3D G3DSA:2.160.10.10 210 350 4.6E-21 T 29-03-2018 Y880_RS16385 f5cbfbd0b46e341c6ff57fa854c94f3f 353 Gene3D G3DSA:2.160.10.10 26 171 5.4E-23 T 29-03-2018 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 SMART SM00421 153 210 1.9E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 SUPERFAMILY SSF46894 146 211 1.7E-16 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 Gene3D G3DSA:3.40.50.2300 1 126 2.9E-27 T 29-03-2018 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 Gene3D G3DSA:1.10.10.10 127 215 1.4E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 Pfam PF00072 Response regulator receiver domain 4 117 4.4E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 SMART SM00448 2 116 2.3E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 2.0E-20 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 4.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 4.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 4.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07050 ef238751d5931b4d66f1021cf5779b51 221 SUPERFAMILY SSF52172 1 131 4.7E-28 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS25460 a25ba2295316593eaacb6926553fffe4 558 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 326 551 6.5E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS25460 a25ba2295316593eaacb6926553fffe4 558 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 290 550 2.0E-74 T 29-03-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Y880_RS25460 a25ba2295316593eaacb6926553fffe4 558 Gene3D G3DSA:1.10.3720.10 227 555 4.0E-39 T 29-03-2018 Y880_RS25460 a25ba2295316593eaacb6926553fffe4 558 SUPERFAMILY SSF161098 285 540 2.75E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS03175 a3e7d88add630fbbee20d630a0df0de2 344 Gene3D G3DSA:3.10.310.10 1 151 1.2E-25 T 29-03-2018 Y880_RS03175 a3e7d88add630fbbee20d630a0df0de2 344 SUPERFAMILY SSF54506 1 333 4.71E-109 T 29-03-2018 Y880_RS03175 a3e7d88add630fbbee20d630a0df0de2 344 PIRSF PIRSF029792 1 336 1.7E-116 T 29-03-2018 IPR008794 Proline racemase family Y880_RS03175 a3e7d88add630fbbee20d630a0df0de2 344 Pfam PF05544 Proline racemase 9 334 9.3E-140 T 29-03-2018 IPR008794 Proline racemase family Y880_RS03175 a3e7d88add630fbbee20d630a0df0de2 344 Gene3D G3DSA:3.10.310.10 152 311 6.7E-52 T 29-03-2018 Y880_RS28680 a82536b134f190752217618ec5c8626b 144 SMART SM00732 8 108 8.0E-40 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Y880_RS28680 a82536b134f190752217618ec5c8626b 144 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 8 143 24.793 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Y880_RS28680 a82536b134f190752217618ec5c8626b 144 SUPERFAMILY SSF53098 9 141 1.82E-40 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS28680 a82536b134f190752217618ec5c8626b 144 Pfam PF03652 Holliday junction resolvase 10 140 1.4E-39 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Y880_RS28680 a82536b134f190752217618ec5c8626b 144 Gene3D G3DSA:3.30.420.140 7 144 1.7E-40 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Y880_RS28680 a82536b134f190752217618ec5c8626b 144 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 11 139 2.6E-40 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PIRSF PIRSF004557 8 436 1.5E-119 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 SUPERFAMILY SSF103491 15 419 1.44E-128 T 29-03-2018 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 428 29.003 T 29-03-2018 IPR026593 Protein translocase subunit SecY Y880_RS19475 23900d192c3f73be4d006010650338a6 442 Pfam PF00344 SecY translocase 75 412 1.1E-115 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 ProSitePatterns PS00755 Protein secY signature 1. 75 94 - T 29-03-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 21 424 7.8E-130 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 74 94 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 115 138 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 22 40 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 5.5E-90 T 29-03-2018 Y880_RS19475 23900d192c3f73be4d006010650338a6 442 Gene3D G3DSA:1.10.3370.10 13 434 7.1E-157 T 29-03-2018 Y880_RS03735 f0e55f71a11438a5eec4f517d834c272 813 Gene3D G3DSA:2.40.170.20 260 812 5.2E-54 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03735 f0e55f71a11438a5eec4f517d834c272 813 SMART SM00965 53 104 4.9E-14 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS03735 f0e55f71a11438a5eec4f517d834c272 813 Pfam PF00593 TonB dependent receptor 344 809 3.0E-43 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03735 f0e55f71a11438a5eec4f517d834c272 813 Gene3D G3DSA:2.170.130.10 112 244 5.8E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS03735 f0e55f71a11438a5eec4f517d834c272 813 Pfam PF07715 TonB-dependent Receptor Plug Domain 138 238 3.0E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS03735 f0e55f71a11438a5eec4f517d834c272 813 SUPERFAMILY SSF56935 122 813 2.62E-95 T 29-03-2018 Y880_RS03735 f0e55f71a11438a5eec4f517d834c272 813 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 139 794 3.0E-103 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS17725 d4ea18640b64d48e78f84f75773b52ef 317 Pfam PF04773 FecR protein 113 204 2.2E-19 T 29-03-2018 IPR006860 FecR protein Y880_RS17725 d4ea18640b64d48e78f84f75773b52ef 317 Pfam PF16220 Domain of unknown function (DUF4880) 15 57 4.0E-13 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS17725 d4ea18640b64d48e78f84f75773b52ef 317 PIRSF PIRSF018266 4 316 1.3E-94 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS19835 4e519f1617ef3ca47ae28c5e3e280a0e 371 Gene3D G3DSA:3.40.50.2000 187 344 3.2E-35 T 29-03-2018 Y880_RS19835 4e519f1617ef3ca47ae28c5e3e280a0e 371 Gene3D G3DSA:3.40.50.2000 8 186 1.3E-15 T 29-03-2018 Y880_RS19835 4e519f1617ef3ca47ae28c5e3e280a0e 371 SUPERFAMILY SSF53756 6 361 6.85E-64 T 29-03-2018 Y880_RS19835 4e519f1617ef3ca47ae28c5e3e280a0e 371 Pfam PF13439 Glycosyltransferase Family 4 15 175 2.4E-21 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS19835 4e519f1617ef3ca47ae28c5e3e280a0e 371 Pfam PF00534 Glycosyl transferases group 1 188 331 3.2E-20 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS07610 0ad0041f50424c518a9f9cfaadd29b40 300 Gene3D G3DSA:3.40.50.1820 3 298 1.8E-49 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS07610 0ad0041f50424c518a9f9cfaadd29b40 300 Pfam PF00561 alpha/beta hydrolase fold 31 145 3.2E-20 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS07610 0ad0041f50424c518a9f9cfaadd29b40 300 SUPERFAMILY SSF53474 4 295 3.06E-64 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS07610 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 269 291 1.5E-7 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS07610 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 37 55 1.5E-7 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS07610 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 103 116 1.5E-7 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS07610 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 117 130 1.5E-7 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 447 42.096 T 29-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 Gene3D G3DSA:1.10.8.60 335 435 9.0E-24 T 29-03-2018 Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 Gene3D G3DSA:3.40.50.300 1 332 2.1E-50 T 29-03-2018 Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 SUPERFAMILY SSF52540 3 445 2.83E-88 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 SMART SM00382 48 332 2.6E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 137 2.1E-7 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 SMART SM01086 335 433 3.6E-15 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 3 447 3.5E-210 T 29-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Y880_RS23825 a16ca15dcd72cff649a2985e172610e0 447 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 329 8.1E-40 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS10790 a849516e174b109da9472d06389e498a 196 Gene3D G3DSA:2.10.70.20 138 173 1.7E-7 T 29-03-2018 Y880_RS10790 a849516e174b109da9472d06389e498a 196 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 30 3.3E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 165 2.7E-60 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 569 4.6E-258 T 29-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 Gene3D G3DSA:3.40.50.1220 191 354 8.7E-50 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 SUPERFAMILY SSF52518 374 567 5.31E-65 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 SUPERFAMILY SSF52518 4 179 1.3E-65 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 Gene3D G3DSA:3.40.50.970 355 565 5.6E-45 T 29-03-2018 Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.2E-41 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 7.0E-49 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 SUPERFAMILY SSF52467 189 360 4.36E-62 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS21955 f84c58e90485a051c87b2170070c3456 574 Gene3D G3DSA:3.40.50.970 2 190 4.6E-65 T 29-03-2018 Y880_RS06870 23a823060929591a9fecd9fc11c6036a 365 Pfam PF00583 Acetyltransferase (GNAT) family 15 125 1.9E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS06870 23a823060929591a9fecd9fc11c6036a 365 Gene3D G3DSA:3.90.70.10 164 364 7.6E-20 T 29-03-2018 Y880_RS06870 23a823060929591a9fecd9fc11c6036a 365 SUPERFAMILY SSF55729 1 146 4.8E-33 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS06870 23a823060929591a9fecd9fc11c6036a 365 Pfam PF11814 Peptidase_C39 like family 159 361 8.1E-92 T 29-03-2018 IPR021770 Protein of unknown function DUF3335 Y880_RS06870 23a823060929591a9fecd9fc11c6036a 365 Gene3D G3DSA:3.40.630.30 76 142 1.9E-20 T 29-03-2018 Y880_RS06870 23a823060929591a9fecd9fc11c6036a 365 Gene3D G3DSA:3.40.630.30 1 75 1.4E-12 T 29-03-2018 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 SMART SM00851 22 135 2.6E-59 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22785 ef9211fc87502928495868c503f3b871 535 Gene3D G3DSA:3.40.50.1380 1 197 1.9E-74 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22785 ef9211fc87502928495868c503f3b871 535 SUPERFAMILY SSF52335 10 197 4.45E-70 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22785 ef9211fc87502928495868c503f3b871 535 SUPERFAMILY SSF53927 222 535 1.0E-127 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 PIRSF PIRSF000414 4 535 3.5E-216 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 10 535 44.702 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 Gene3D G3DSA:3.40.140.20 382 525 2.9E-55 T 29-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 11 535 2.1E-234 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 Pfam PF02142 MGS-like domain 22 135 1.8E-27 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22785 ef9211fc87502928495868c503f3b871 535 Pfam PF01808 AICARFT/IMPCHase bienzyme 140 466 6.7E-115 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 Gene3D G3DSA:3.40.140.20 229 380 1.8E-46 T 29-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS22785 ef9211fc87502928495868c503f3b871 535 SMART SM00798 140 467 1.8E-206 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 Gene3D G3DSA:3.40.630.30 106 331 1.8E-20 T 29-03-2018 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 Pfam PF00583 Acetyltransferase (GNAT) family 158 248 6.3E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 Gene3D G3DSA:3.30.1490.20 332 401 4.7E-15 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 SUPERFAMILY SSF55729 63 255 3.31E-26 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 Pfam PF08443 RimK-like ATP-grasp domain 332 434 4.4E-8 T 29-03-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 SUPERFAMILY SSF56059 500 578 2.53E-31 T 29-03-2018 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 SUPERFAMILY SSF56059 333 443 2.53E-31 T 29-03-2018 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 Gene3D G3DSA:3.30.470.20 402 579 2.5E-24 T 29-03-2018 Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 TIGRFAM TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103 40 582 4.4E-274 T 29-03-2018 IPR017534 GNAT-acetyltransferase Y880_RS15420 f78ef244d00d02b8a54b8cad71938513 585 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 280 289 - T 29-03-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site Y880_RS26730 f5a9c14260409bcfa9bf6fb6a06e532b 517 Gene3D G3DSA:3.30.750.24 416 508 3.1E-14 T 29-03-2018 IPR002645 STAS domain Y880_RS26730 f5a9c14260409bcfa9bf6fb6a06e532b 517 Pfam PF13466 STAS domain 451 503 1.4E-7 T 29-03-2018 IPR002645 STAS domain Y880_RS26730 f5a9c14260409bcfa9bf6fb6a06e532b 517 SUPERFAMILY SSF52091 425 503 1.2E-13 T 29-03-2018 IPR002645 STAS domain Y880_RS26730 f5a9c14260409bcfa9bf6fb6a06e532b 517 Pfam PF00916 Sulfate permease family 27 385 2.9E-71 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y880_RS26230 e4782720a4e19039b8e7f96e2431c76f 222 PIRSF PIRSF029730 1 222 1.7E-90 T 29-03-2018 IPR011227 Uncharacterised conserved protein UCP029730 Y880_RS26230 e4782720a4e19039b8e7f96e2431c76f 222 SUPERFAMILY SSF53187 1 222 1.26E-63 T 29-03-2018 Y880_RS26230 e4782720a4e19039b8e7f96e2431c76f 222 Pfam PF05013 N-formylglutamate amidohydrolase 1 203 2.6E-38 T 29-03-2018 IPR007709 N-formylglutamate amidohydrolase Y880_RS26230 e4782720a4e19039b8e7f96e2431c76f 222 Gene3D G3DSA:3.40.630.40 1 222 8.9E-52 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82866 804 1026 4.71E-47 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82714 185 274 3.53E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82693 148 184 4.24E-21 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82693 276 332 4.24E-21 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Gene3D G3DSA:3.30.70.1430 38 140 3.0E-24 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 9.0E-100 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82693 38 129 2.09E-23 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Gene3D G3DSA:3.30.70.1430 569 667 9.5E-17 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82714 721 806 5.36E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Gene3D G3DSA:3.30.2090.10 182 277 7.1E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82866 298 499 1.05E-49 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Gene3D G3DSA:1.20.1640.10 290 512 4.9E-47 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1038 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 SUPERFAMILY SSF82693 567 670 4.03E-24 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Gene3D G3DSA:1.20.1640.10 844 1027 4.7E-37 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Pfam PF00873 AcrB/AcrD/AcrF family 1 1023 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Gene3D G3DSA:3.30.70.1440 671 765 9.0E-16 T 29-03-2018 Y880_RS21335 3732f19f87e0c1c611f5daca1176e105 1043 Gene3D G3DSA:3.30.70.1320 766 843 2.3E-8 T 29-03-2018 Y880_RS04485 0180254f306236110732afd51bb41882 591 Gene3D G3DSA:3.40.50.970 1 191 6.8E-48 T 29-03-2018 Y880_RS04485 0180254f306236110732afd51bb41882 591 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 2 590 0.0 T 29-03-2018 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47 Y880_RS04485 0180254f306236110732afd51bb41882 591 SUPERFAMILY SSF52518 3 184 2.4E-48 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS04485 0180254f306236110732afd51bb41882 591 Gene3D G3DSA:3.40.50.970 374 582 9.4E-43 T 29-03-2018 Y880_RS04485 0180254f306236110732afd51bb41882 591 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 2.0E-51 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y880_RS04485 0180254f306236110732afd51bb41882 591 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 328 3.1E-35 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y880_RS04485 0180254f306236110732afd51bb41882 591 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 553 3.5E-33 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y880_RS04485 0180254f306236110732afd51bb41882 591 SUPERFAMILY SSF52467 161 350 4.24E-48 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS04485 0180254f306236110732afd51bb41882 591 SUPERFAMILY SSF52518 369 567 3.13E-51 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS04485 0180254f306236110732afd51bb41882 591 Gene3D G3DSA:3.40.50.1220 192 373 1.7E-44 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS29740 9f65953eaca82a83130e5db24e5d08ff 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 258 3.5E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS29740 9f65953eaca82a83130e5db24e5d08ff 276 Gene3D G3DSA:1.10.3720.10 12 272 1.5E-44 T 29-03-2018 Y880_RS29740 9f65953eaca82a83130e5db24e5d08ff 276 SUPERFAMILY SSF161098 11 267 3.08E-59 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS17905 4988d659c768a7725742870bc3b5f798 678 Pfam PF03169 OPT oligopeptide transporter protein 13 634 5.1E-110 T 29-03-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Y880_RS17905 4988d659c768a7725742870bc3b5f798 678 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 13 636 2.5E-214 T 29-03-2018 IPR004814 Oligopeptide transporter OPT Y880_RS17905 4988d659c768a7725742870bc3b5f798 678 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 7 632 1.5E-112 T 29-03-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Y880_RS27280 88ef7ef97b92cde4e92600ec88258018 305 Pfam PF03466 LysR substrate binding domain 101 302 2.6E-25 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27280 88ef7ef97b92cde4e92600ec88258018 305 Gene3D G3DSA:3.40.190.10 94 216 8.9E-14 T 29-03-2018 Y880_RS27280 88ef7ef97b92cde4e92600ec88258018 305 SUPERFAMILY SSF53850 97 302 4.71E-24 T 29-03-2018 Y880_RS27280 88ef7ef97b92cde4e92600ec88258018 305 SUPERFAMILY SSF46785 16 101 3.44E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27280 88ef7ef97b92cde4e92600ec88258018 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 76 3.8E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27280 88ef7ef97b92cde4e92600ec88258018 305 Gene3D G3DSA:1.10.10.10 11 93 7.8E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 1.3E-128 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 2.6E-88 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 Gene3D G3DSA:3.40.47.10 177 264 1.3E-21 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 Gene3D G3DSA:3.40.47.10 1 176 8.4E-38 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 Pfam PF02803 Thiolase, C-terminal domain 268 389 5.0E-40 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 PIRSF PIRSF000429 1 391 1.7E-113 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 SUPERFAMILY SSF53901 269 390 1.73E-40 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 SUPERFAMILY SSF53901 3 268 7.52E-81 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 Gene3D G3DSA:3.40.47.10 265 388 3.7E-29 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS17860 af0e6ef1d173e92d08de083246681d09 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 SUPERFAMILY SSF51735 156 346 3.94E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 Gene3D G3DSA:3.40.50.720 180 356 1.2E-24 T 29-03-2018 Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 SMART SM00829 7 379 0.0013 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 Pfam PF00107 Zinc-binding dehydrogenase 189 257 1.2E-11 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 SUPERFAMILY SSF50129 1 193 2.28E-54 T 29-03-2018 IPR011032 GroES-like Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 139 4.6E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS08010 e98ff6fabc05012822ee90858e03f723 415 Gene3D G3DSA:3.90.180.10 1 179 1.2E-47 T 29-03-2018 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 Gene3D G3DSA:1.10.8.60 345 416 4.5E-29 T 29-03-2018 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 244 258 1.8E-52 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 232 1.8E-52 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 276 290 1.8E-52 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 472 491 1.8E-52 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 310 337 1.8E-52 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 SMART SM00382 211 420 2.3E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 SUPERFAMILY SSF48295 410 512 6.28E-37 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 513 34.157 T 29-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 SUPERFAMILY SSF52540 180 390 2.21E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 Gene3D G3DSA:1.10.1750.10 417 513 4.1E-35 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 Pfam PF00308 Bacterial dnaA protein 179 396 9.5E-100 T 29-03-2018 IPR013317 Chromosomal replication initiator protein DnaA Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 423 491 9.3E-32 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 ProSitePatterns PS01008 DnaA protein signature. 472 491 - T 29-03-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 SMART SM00760 422 491 9.1E-44 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 Gene3D G3DSA:3.40.50.300 176 343 1.5E-20 T 29-03-2018 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 512 1.8E-187 T 29-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Y880_RS26590 87a53b7e3ab3c9efc5c08392ae3c894f 514 Pfam PF11638 DnaA N-terminal domain 4 63 6.4E-21 T 29-03-2018 IPR024633 DnaA N-terminal domain Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 Gene3D G3DSA:1.10.10.10 124 226 5.4E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 SUPERFAMILY SSF52172 1 175 1.36E-38 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 5.7E-103 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 1.0E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 Gene3D G3DSA:3.40.50.2300 1 123 8.1E-34 T 29-03-2018 Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 Pfam PF00072 Response regulator receiver domain 4 112 3.6E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 SMART SM00862 146 221 2.4E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS11585 f20a3afdb13caf86854e110b32fab366 226 SMART SM00448 1 112 8.3E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS08150 bf5a2e23d624416dbf2eb1134c8d3284 404 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 404 77.866 T 29-03-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y880_RS08150 bf5a2e23d624416dbf2eb1134c8d3284 404 SUPERFAMILY SSF55931 8 368 5.2E-86 T 29-03-2018 Y880_RS08150 bf5a2e23d624416dbf2eb1134c8d3284 404 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 11 295 3.3E-115 T 29-03-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y880_RS08150 bf5a2e23d624416dbf2eb1134c8d3284 404 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 12 290 1.4E-88 T 29-03-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 202 215 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 Gene3D G3DSA:1.10.10.60 432 493 2.4E-11 T 29-03-2018 Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 Pfam PF00158 Sigma-54 interaction domain 178 342 1.6E-64 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 SMART SM00382 198 345 9.3E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 SUPERFAMILY SSF46689 435 493 1.18E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 SUPERFAMILY SSF52540 178 423 8.32E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 Gene3D G3DSA:3.40.50.10770 3 140 3.4E-6 T 29-03-2018 Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 Gene3D G3DSA:1.10.8.60 351 428 1.6E-17 T 29-03-2018 Y880_RS00820 847cbb478a7b91f68318a0b7a31cd989 493 Gene3D G3DSA:3.40.50.300 173 350 1.3E-24 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SMART SM00448 958 1074 2.9E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Pfam PF00072 Response regulator receiver domain 960 1074 3.1E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 863 877 1.7E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 897 915 1.7E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 881 891 1.7E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 921 934 1.7E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:1.10.287.130 707 769 9.3E-15 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 577 692 1.7E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SMART SM00062 298 520 8.0E-26 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SMART SM00062 56 275 9.7E-18 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF53850 292 519 7.5E-39 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:1.20.120.160 1095 1209 1.8E-14 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:3.40.190.10 51 162 8.3E-15 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Pfam PF00512 His Kinase A (phospho-acceptor) domain 709 775 1.9E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Pfam PF08448 PAS fold 583 690 8.3E-13 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 300 516 6.9E-31 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 64 273 1.1E-25 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF55785 561 687 9.77E-18 T 29-03-2018 IPR000014 PAS domain Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:3.40.190.10 163 282 2.9E-8 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SMART SM00388 709 775 8.3E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF55874 765 935 6.68E-40 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:3.40.190.10 287 439 1.0E-22 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF53850 48 274 2.55E-32 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:3.30.565.10 770 937 1.1E-42 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 823 935 2.4E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:3.30.450.20 551 706 8.5E-23 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF47384 692 776 1.43E-17 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF47226 1100 1182 5.23E-18 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF47226 1057 1070 5.23E-18 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:3.40.190.10 440 517 2.5E-4 T 29-03-2018 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SUPERFAMILY SSF52172 956 1076 1.57E-33 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SMART SM00091 574 642 0.001 T 29-03-2018 IPR000014 PAS domain Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 SMART SM00387 822 937 1.1E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Pfam PF01627 Hpt domain 1121 1178 9.6E-9 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS17970 2e70f396b3f533d1862b3a5de592f944 1212 Gene3D G3DSA:3.40.50.2300 951 1094 4.4E-35 T 29-03-2018 Y880_RS08400 cc199309d0ef90e37083a1bc0a14b613 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 5.6E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS08400 cc199309d0ef90e37083a1bc0a14b613 193 Gene3D G3DSA:1.10.357.10 5 190 1.1E-27 T 29-03-2018 Y880_RS08400 cc199309d0ef90e37083a1bc0a14b613 193 SUPERFAMILY SSF46689 5 77 2.62E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS05990 c77d31df05a86199efbe60637790bb2a 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 2 99 1.3E-32 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 Y880_RS05990 c77d31df05a86199efbe60637790bb2a 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 2 98 2.4E-15 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 Y880_RS05990 c77d31df05a86199efbe60637790bb2a 108 Gene3D G3DSA:2.102.10.10 1 106 4.3E-26 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS05990 c77d31df05a86199efbe60637790bb2a 108 SUPERFAMILY SSF50022 1 103 1.96E-34 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF02824 TGS domain 4 61 4.7E-10 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF55681 242 525 2.11E-101 T 29-03-2018 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF81271 3 61 7.52E-15 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF52954 528 632 3.93E-30 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF03129 Anticodon binding domain 540 628 3.7E-19 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.30.980.10 68 227 3.8E-41 T 29-03-2018 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 3.6E-52 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 3.6E-52 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 3.6E-52 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 3.6E-52 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 3.6E-52 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 171 218 3.0E-14 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.30.930.10 228 530 1.6E-123 T 29-03-2018 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 SMART SM00863 169 218 2.1E-20 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.10.20.30 1 64 6.1E-17 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 528 7.7E-46 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 34.194 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 629 8.3E-224 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF55186 63 240 2.62E-64 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 Y880_RS11175 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.40.50.800 531 640 6.7E-25 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 SUPERFAMILY SSF50249 49 125 1.77E-29 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 4.8E-15 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 2.3E-219 T 29-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 Gene3D G3DSA:3.40.50.300 129 419 4.8E-57 T 29-03-2018 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 253.582 T 29-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 SUPERFAMILY SSF52540 90 371 3.24E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 SMART SM00382 170 355 6.3E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 SUPERFAMILY SSF68912 1 46 3.92E-11 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 Gene3D G3DSA:2.40.50.140 2 126 7.1E-46 T 29-03-2018 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 SMART SM00959 5 47 9.0E-16 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 3.7E-24 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 SMART SM00357 52 118 8.8E-20 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 Y880_RS24800 397e54baea9a8d6f1559af43fbbe05c1 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 4.0E-32 T 29-03-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 PIRSF PIRSF000429 1 401 6.4E-114 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 Gene3D G3DSA:3.40.47.10 1 269 1.4E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.1E-130 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 Pfam PF00108 Thiolase, N-terminal domain 5 270 1.6E-46 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 Pfam PF02803 Thiolase, C-terminal domain 279 400 2.6E-47 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 Gene3D G3DSA:3.40.47.10 270 397 2.5E-31 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 SUPERFAMILY SSF53901 280 400 5.07E-44 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS05755 0c26ea812f807103b7c1b8963392e9cf 401 SUPERFAMILY SSF53901 3 278 3.84E-62 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS15710 86989545e25d9548c8d774badda63ae2 345 Gene3D G3DSA:1.20.910.10 114 345 7.0E-30 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS15710 86989545e25d9548c8d774badda63ae2 345 SUPERFAMILY SSF48613 120 334 1.35E-30 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS15710 86989545e25d9548c8d774badda63ae2 345 SMART SM01236 187 289 2.7E-20 T 29-03-2018 Y880_RS15710 86989545e25d9548c8d774badda63ae2 345 Gene3D G3DSA:1.10.1240.20 21 106 1.4E-35 T 29-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 Y880_RS15710 86989545e25d9548c8d774badda63ae2 345 Pfam PF14518 Iron-containing redox enzyme 154 321 3.8E-14 T 29-03-2018 IPR028201 PqqC-like protein Y880_RS15710 86989545e25d9548c8d774badda63ae2 345 Pfam PF14515 Haem-oxygenase-associated N-terminal helices 19 106 1.3E-44 T 29-03-2018 IPR029474 Haem-oxygenase-associated, N-terminal helices Y880_RS14760 a82450c74c4e272b55f6d937d086a0a2 332 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 4 331 47.702 T 29-03-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 Y880_RS14760 a82450c74c4e272b55f6d937d086a0a2 332 Gene3D G3DSA:3.40.50.720 2 167 1.3E-15 T 29-03-2018 Y880_RS14760 a82450c74c4e272b55f6d937d086a0a2 332 SUPERFAMILY SSF51735 3 328 4.05E-55 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14760 a82450c74c4e272b55f6d937d086a0a2 332 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 243 8.4E-41 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS14760 a82450c74c4e272b55f6d937d086a0a2 332 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 5 330 1.0E-129 T 29-03-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 Y880_RS14760 a82450c74c4e272b55f6d937d086a0a2 332 Gene3D G3DSA:3.90.25.10 168 332 7.9E-25 T 29-03-2018 Y880_RS03620 8a34d8624a78e4ae114fa0bff19a31ff 302 Gene3D G3DSA:3.40.190.10 168 302 6.8E-18 T 29-03-2018 Y880_RS03620 8a34d8624a78e4ae114fa0bff19a31ff 302 Gene3D G3DSA:3.40.190.10 10 167 2.6E-29 T 29-03-2018 Y880_RS03620 8a34d8624a78e4ae114fa0bff19a31ff 302 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 269 7.0E-51 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS03620 8a34d8624a78e4ae114fa0bff19a31ff 302 SUPERFAMILY SSF53850 8 272 6.73E-64 T 29-03-2018 Y880_RS03620 8a34d8624a78e4ae114fa0bff19a31ff 302 SMART SM00062 38 271 9.3E-57 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 SUPERFAMILY SSF55874 332 437 1.09E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 Pfam PF08521 Two-component sensor kinase N-terminal 16 147 3.0E-9 T 29-03-2018 IPR013727 Two-component sensor kinase, N-terminal Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 Gene3D G3DSA:1.20.5.1040 1 58 6.2E-8 T 29-03-2018 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 Gene3D G3DSA:1.20.5.1040 118 172 0.043 T 29-03-2018 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 SUPERFAMILY SSF47384 208 287 7.26E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 Gene3D G3DSA:3.30.565.10 279 440 3.1E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 SMART SM00387 334 440 2.8E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 Gene3D G3DSA:1.10.287.130 215 278 1.4E-11 T 29-03-2018 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 6.8E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 6.8E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 437 6.8E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 SMART SM00388 225 289 3.8E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 Pfam PF00512 His Kinase A (phospho-acceptor) domain 227 288 7.7E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS09740 596fbed183e8bf5752bb4e93864e239a 440 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 439 3.8E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 SUPERFAMILY SSF47203 229 377 1.16E-46 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 377 5.4E-40 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 Gene3D G3DSA:2.40.110.10 121 216 6.3E-36 T 29-03-2018 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 SUPERFAMILY SSF56645 5 241 1.96E-79 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 Gene3D G3DSA:1.20.140.10 217 377 3.4E-51 T 29-03-2018 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 119 1.1E-29 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 Gene3D G3DSA:1.10.540.10 1 120 2.4E-33 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS02820 37c830e3ebc6bede3db6eee57369001a 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 217 4.0E-24 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS29390 3ccfca0007ab65d4f62c0dbb2f764c48 169 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 6 168 18.337 T 29-03-2018 IPR022920 Disulphide bond formation protein DsbB Y880_RS29390 3ccfca0007ab65d4f62c0dbb2f764c48 169 Pfam PF02600 Disulfide bond formation protein DsbB 11 159 8.6E-34 T 29-03-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 Y880_RS29390 3ccfca0007ab65d4f62c0dbb2f764c48 169 Gene3D G3DSA:1.20.1550.10 1 167 2.6E-35 T 29-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain Y880_RS29390 3ccfca0007ab65d4f62c0dbb2f764c48 169 SUPERFAMILY SSF158442 13 159 2.22E-32 T 29-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 SUPERFAMILY SSF55785 204 299 2.79E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Gene3D G3DSA:3.30.450.20 194 312 1.4E-18 T 29-03-2018 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Gene3D G3DSA:1.10.8.60 517 583 7.7E-15 T 29-03-2018 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Pfam PF08448 PAS fold 211 308 1.2E-7 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 615 632 1.8E-5 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 632 650 1.8E-5 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Pfam PF00158 Sigma-54 interaction domain 333 499 2.4E-66 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Pfam PF06506 Propionate catabolism activator 37 199 2.7E-41 T 29-03-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 356 369 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Gene3D G3DSA:1.10.10.60 584 650 2.8E-11 T 29-03-2018 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 SUPERFAMILY SSF159800 22 195 2.48E-40 T 29-03-2018 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 SMART SM00091 205 271 6.3E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 SMART SM00382 352 497 1.2E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 SUPERFAMILY SSF52540 333 564 5.83E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 547 556 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Gene3D G3DSA:3.40.50.300 313 516 2.4E-35 T 29-03-2018 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 SUPERFAMILY SSF46689 547 647 3.26E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Gene3D G3DSA:3.40.50.10660 99 176 2.5E-19 T 29-03-2018 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 204 313 2.8E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Pfam PF02954 Bacterial regulatory protein, Fis family 615 647 6.0E-11 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS08320 980178d2b151dd20992d22acc97f6b60 650 Gene3D G3DSA:3.40.50.2300 20 98 1.0E-12 T 29-03-2018 Y880_RS26200 45f94421b1599785156c0c193397700a 335 SMART SM00382 30 219 2.7E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26200 45f94421b1599785156c0c193397700a 335 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS26200 45f94421b1599785156c0c193397700a 335 Gene3D G3DSA:3.30.70.260 254 335 4.7E-22 T 29-03-2018 Y880_RS26200 45f94421b1599785156c0c193397700a 335 SUPERFAMILY SSF52540 1 241 6.81E-82 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26200 45f94421b1599785156c0c193397700a 335 Gene3D G3DSA:3.40.50.300 1 253 4.4E-80 T 29-03-2018 Y880_RS26200 45f94421b1599785156c0c193397700a 335 SMART SM00930 261 334 8.6E-25 T 29-03-2018 IPR018449 NIL domain Y880_RS26200 45f94421b1599785156c0c193397700a 335 Pfam PF09383 NIL domain 264 333 5.2E-19 T 29-03-2018 IPR018449 NIL domain Y880_RS26200 45f94421b1599785156c0c193397700a 335 SUPERFAMILY SSF55021 262 334 9.27E-17 T 29-03-2018 Y880_RS26200 45f94421b1599785156c0c193397700a 335 Pfam PF00005 ABC transporter 22 170 6.9E-36 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 6.9E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 6.9E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 6.9E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 Gene3D G3DSA:3.40.50.1820 2 311 1.5E-67 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 SUPERFAMILY SSF53474 4 296 7.16E-65 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 Pfam PF00561 alpha/beta hydrolase fold 36 296 4.2E-37 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 2.5E-13 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 120 2.5E-13 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 2.5E-13 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 9 311 1.3E-130 T 29-03-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 Y880_RS23960 123fdee85e87ff7d28c9bb9f8aed602e 323 PIRSF PIRSF006431 1 315 9.2E-136 T 29-03-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 SUPERFAMILY SSF53383 11 449 3.81E-129 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 Gene3D G3DSA:3.40.640.10 101 327 2.3E-48 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 Gene3D G3DSA:3.90.1150.10 328 455 5.6E-35 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 Pfam PF00202 Aminotransferase class-III 37 446 2.9E-94 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 Gene3D G3DSA:3.90.1150.10 2 100 4.5E-10 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 PIRSF PIRSF000521 35 154 3.8E-9 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 PIRSF PIRSF000521 143 450 6.2E-21 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS28120 18e0fb5865e5494a89f492e35f76000c 456 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 259 296 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF55021 667 743 5.0E-15 T 29-03-2018 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF109604 18 218 1.79E-49 T 29-03-2018 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF81271 407 475 5.01E-22 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF13328 HD domain 40 202 6.3E-46 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Gene3D G3DSA:3.30.70.260 665 746 3.5E-12 T 29-03-2018 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 69 742 1.6E-189 T 29-03-2018 IPR004811 RelA/SpoT family GO:0015969 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF02824 TGS domain 416 475 7.3E-22 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF81301 207 420 2.62E-63 T 29-03-2018 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF13291 ACT domain 666 743 2.5E-19 T 29-03-2018 IPR002912 ACT domain Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Gene3D G3DSA:3.10.20.30 410 484 7.9E-24 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF04607 Region found in RelA / SpoT proteins 262 370 7.2E-38 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Gene3D G3DSA:3.30.460.10 219 352 7.5E-45 T 29-03-2018 Y880_RS01465 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SMART SM00954 262 372 3.9E-66 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 Y880_RS13295 1f2549aabae0ba2729555dede68e015d 158 Gene3D G3DSA:1.10.260.40 2 112 4.0E-10 T 29-03-2018 Y880_RS13295 1f2549aabae0ba2729555dede68e015d 158 SUPERFAMILY SSF47413 9 61 4.02E-8 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS13295 1f2549aabae0ba2729555dede68e015d 158 Pfam PF13560 Helix-turn-helix domain 11 58 9.4E-8 T 29-03-2018 Y880_RS13295 1f2549aabae0ba2729555dede68e015d 158 SMART SM00530 13 68 0.0036 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS27240 d1715e1768a9f015d906ad5ae3e18d47 75 Pfam PF01402 Ribbon-helix-helix protein, copG family 5 42 4.2E-12 T 29-03-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Y880_RS27240 d1715e1768a9f015d906ad5ae3e18d47 75 Gene3D G3DSA:1.10.1220.10 1 43 1.5E-10 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Y880_RS27240 d1715e1768a9f015d906ad5ae3e18d47 75 SUPERFAMILY SSF48092 16 72 3.53E-13 T 29-03-2018 IPR013799 STAT transcription factor, protein interaction GO:0006355|GO:0007165 Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 Gene3D G3DSA:1.10.10.10 7 143 1.6E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 Pfam PF12802 MarR family 30 89 2.9E-9 T 29-03-2018 Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 1.1E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 1.1E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 1.1E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 SMART SM00347 23 123 1.2E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 SUPERFAMILY SSF46785 7 138 3.71E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01510 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SUPERFAMILY SSF55781 311 493 4.51E-42 T 29-03-2018 IPR029016 GAF domain-like Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SMART SM00065 139 313 6.5E-10 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SUPERFAMILY SSF55781 128 307 2.55E-60 T 29-03-2018 IPR029016 GAF domain-like Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Pfam PF08446 PAS fold 12 76 1.0E-10 T 29-03-2018 IPR013654 PAS fold-2 GO:0006355 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 611 716 7.3E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 PRINTS PR01033 Phytochrome signature 456 474 2.1E-22 T 29-03-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 PRINTS PR01033 Phytochrome signature 241 262 2.1E-22 T 29-03-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 PRINTS PR01033 Phytochrome signature 339 359 2.1E-22 T 29-03-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 PRINTS PR01033 Phytochrome signature 422 441 2.1E-22 T 29-03-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 PRINTS PR01033 Phytochrome signature 154 173 2.1E-22 T 29-03-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Gene3D G3DSA:1.10.287.130 493 562 4.5E-14 T 29-03-2018 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Pfam PF00360 Phytochrome region 324 496 1.6E-47 T 29-03-2018 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SUPERFAMILY SSF55785 6 115 1.62E-25 T 29-03-2018 IPR000014 PAS domain Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Pfam PF00512 His Kinase A (phospho-acceptor) domain 503 566 1.3E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SUPERFAMILY SSF55874 556 721 1.83E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Gene3D G3DSA:3.30.450.20 3 113 2.0E-15 T 29-03-2018 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Gene3D G3DSA:3.30.450.40 125 307 1.0E-37 T 29-03-2018 IPR029016 GAF domain-like Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SMART SM00388 503 566 1.2E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Pfam PF01590 GAF domain 141 289 9.6E-18 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SMART SM00387 610 721 3.4E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 Gene3D G3DSA:3.30.565.10 571 728 3.3E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18835 243812063695218f0f762ac0cf8c6a1a 728 SUPERFAMILY SSF47384 494 566 5.49E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02200 e190db32bf9778a9dfa861120c4b6437 237 Pfam PF13861 FlgD Tudor-like domain 97 233 1.3E-17 T 29-03-2018 IPR025963 FlgD Tudor-like domain Y880_RS02200 e190db32bf9778a9dfa861120c4b6437 237 Pfam PF13860 FlgD Ig-like domain 119 189 3.9E-22 T 29-03-2018 IPR025965 FlgD Ig-like domain Y880_RS02200 e190db32bf9778a9dfa861120c4b6437 237 Pfam PF03963 Flagellar hook capping protein - N-terminal region 24 89 7.7E-25 T 29-03-2018 IPR005648 Flagellar hook capping protein Y880_RS19150 e37ac202c33b19e04a51cae00e50e661 93 Pfam PF13616 PPIC-type PPIASE domain 8 91 4.2E-21 T 29-03-2018 Y880_RS19150 e37ac202c33b19e04a51cae00e50e661 93 Gene3D G3DSA:3.10.50.40 1 93 5.9E-30 T 29-03-2018 Y880_RS19150 e37ac202c33b19e04a51cae00e50e661 93 SUPERFAMILY SSF54534 5 92 1.05E-27 T 29-03-2018 Y880_RS19150 e37ac202c33b19e04a51cae00e50e661 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 29-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 PIRSF PIRSF000124 4 420 1.4E-52 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 SUPERFAMILY SSF51735 5 189 2.6E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 Gene3D G3DSA:3.40.50.720 222 420 4.4E-56 T 29-03-2018 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 Gene3D G3DSA:1.20.5.170 199 221 1.5E-10 T 29-03-2018 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 316 414 5.6E-20 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 200 288 5.6E-24 T 29-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 PIRSF PIRSF500136 1 422 4.2E-151 T 29-03-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 SUPERFAMILY SSF52413 298 415 1.11E-28 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 SMART SM00984 315 415 4.9E-35 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 Gene3D G3DSA:3.40.50.720 2 197 2.3E-39 T 29-03-2018 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 408 8.2E-121 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 SUPERFAMILY SSF48179 199 289 1.26E-24 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS13800 0648b646f2fc2e970fb87dcd4907a760 422 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 178 1.2E-34 T 29-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS07645 11e8403b93256486966480a2bf8d087d 169 Gene3D G3DSA:1.10.1740.10 8 74 2.7E-10 T 29-03-2018 Y880_RS07645 11e8403b93256486966480a2bf8d087d 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 160 4.8E-21 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07645 11e8403b93256486966480a2bf8d087d 169 SUPERFAMILY SSF88659 92 164 1.61E-13 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07645 11e8403b93256486966480a2bf8d087d 169 Pfam PF04545 Sigma-70, region 4 116 163 5.3E-13 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07645 11e8403b93256486966480a2bf8d087d 169 SUPERFAMILY SSF88946 12 98 1.26E-10 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07645 11e8403b93256486966480a2bf8d087d 169 Gene3D G3DSA:1.10.10.10 75 167 7.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07645 11e8403b93256486966480a2bf8d087d 169 Pfam PF04542 Sigma-70 region 2 15 80 2.2E-11 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SMART SM00388 330 396 6.3E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Pfam PF13426 PAS domain 80 179 1.1E-10 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Pfam PF13426 PAS domain 205 306 1.7E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SMART SM00448 584 692 4.0E-9 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 188 315 1.7E-25 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 77 187 7.5E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SMART SM00387 437 557 5.5E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SUPERFAMILY SSF55874 387 556 7.99E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 438 554 4.8E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Gene3D G3DSA:1.10.287.130 322 392 1.4E-9 T 29-03-2018 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SUPERFAMILY SSF55785 77 189 4.47E-19 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Gene3D G3DSA:3.30.565.10 394 556 6.2E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Gene3D G3DSA:3.30.450.20 184 321 8.5E-36 T 29-03-2018 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SUPERFAMILY SSF55785 176 303 2.97E-29 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SMART SM00091 192 261 4.3E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SMART SM00091 64 133 1.4 T 29-03-2018 IPR000014 PAS domain Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Pfam PF00512 His Kinase A (phospho-acceptor) domain 330 394 1.2E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 535 3.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 514 3.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 554 3.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 500 3.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SUPERFAMILY SSF47384 315 393 5.1E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Gene3D G3DSA:3.30.450.20 61 183 4.1E-22 T 29-03-2018 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Pfam PF00072 Response regulator receiver domain 586 669 1.2E-13 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SMART SM00086 266 308 6.3E-4 T 29-03-2018 IPR001610 PAC motif Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SMART SM00086 138 180 1.9 T 29-03-2018 IPR001610 PAC motif Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 Gene3D G3DSA:3.40.50.2300 577 697 5.4E-19 T 29-03-2018 Y880_RS08120 ed0476e3cfba66a7d140660745f3c2d1 699 SUPERFAMILY SSF52172 584 696 1.08E-20 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS19035 67333c5a7be7587c1f3d1cfddf188e2b 694 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 171 1.3E-11 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS19035 67333c5a7be7587c1f3d1cfddf188e2b 694 Gene3D G3DSA:2.40.170.20 181 694 2.8E-72 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS19035 67333c5a7be7587c1f3d1cfddf188e2b 694 SUPERFAMILY SSF56935 33 694 6.72E-107 T 29-03-2018 Y880_RS19035 67333c5a7be7587c1f3d1cfddf188e2b 694 Pfam PF00593 TonB dependent receptor 262 690 8.1E-44 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS19035 67333c5a7be7587c1f3d1cfddf188e2b 694 Gene3D G3DSA:2.170.130.10 34 180 1.9E-21 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS16560 5db55d83f1e7efdc2bbacb250247797e 231 Pfam PF06904 Extensin-like protein C-terminus 60 231 5.3E-61 T 29-03-2018 IPR009683 Extensin-like, C-terminal Y880_RS23125 fa752ba998c90bd70d52744650d0cdd2 148 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 27 146 5.0E-67 T 29-03-2018 Y880_RS23125 fa752ba998c90bd70d52744650d0cdd2 148 SUPERFAMILY SSF49503 21 147 1.81E-48 T 29-03-2018 IPR008972 Cupredoxin Y880_RS23125 fa752ba998c90bd70d52744650d0cdd2 148 Gene3D G3DSA:2.60.40.420 21 148 2.8E-12 T 29-03-2018 IPR008972 Cupredoxin Y880_RS23125 fa752ba998c90bd70d52744650d0cdd2 148 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 125 141 - T 29-03-2018 IPR028871 Blue (type 1) copper protein, binding site Y880_RS23125 fa752ba998c90bd70d52744650d0cdd2 148 TIGRFAM TIGR02695 azurin: azurin 23 147 1.5E-62 T 29-03-2018 IPR014068 Azurin Y880_RS23125 fa752ba998c90bd70d52744650d0cdd2 148 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 21 148 2.6E-32 T 29-03-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 Gene3D G3DSA:2.40.10.170 1 73 2.9E-27 T 29-03-2018 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 SMART SM00382 140 325 1.2E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 331 340 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 Gene3D G3DSA:1.10.1140.10 346 456 1.1E-43 T 29-03-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 SUPERFAMILY SSF47917 343 457 1.28E-53 T 29-03-2018 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 Gene3D G3DSA:3.40.50.300 74 345 1.0E-91 T 29-03-2018 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 3.2E-20 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 SUPERFAMILY SSF50615 2 72 1.39E-23 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 458 2.4E-254 T 29-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 458 56.229 T 29-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 340 1.3E-63 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26495 1dfc8527acf239598835e56fdf7ee8b4 458 SUPERFAMILY SSF52540 75 346 6.71E-92 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PIRSF PIRSF500210 1 336 5.6E-128 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 336 47.094 T 29-03-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 Gene3D G3DSA:3.40.190.80 203 336 7.8E-55 T 29-03-2018 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 Gene3D G3DSA:3.30.540.10 7 202 7.5E-60 T 29-03-2018 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PIRSF PIRSF000904 1 336 1.5E-126 T 29-03-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 SUPERFAMILY SSF56655 2 334 6.35E-117 T 29-03-2018 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 2.3E-74 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 2.3E-74 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 28 55 2.3E-74 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 310 335 2.3E-74 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 2.3E-74 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 65 91 2.3E-74 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS24110 9bca65c961b51172756afe24be41ad17 336 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 196 1.7E-60 T 29-03-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y880_RS04330 981e15e06edfbd74127d9e76435e547d 184 SUPERFAMILY SSF55729 5 177 1.05E-51 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS04330 981e15e06edfbd74127d9e76435e547d 184 Gene3D G3DSA:3.40.630.30 5 184 5.0E-38 T 29-03-2018 Y880_RS04330 981e15e06edfbd74127d9e76435e547d 184 Pfam PF13302 Acetyltransferase (GNAT) domain 13 153 5.9E-36 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS12925 dcc8fa82ebdc81c88f80166300b3b154 433 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 23 433 6.4E-156 T 29-03-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 Y880_RS12925 dcc8fa82ebdc81c88f80166300b3b154 433 Pfam PF02687 FtsX-like permease family 319 426 6.7E-15 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y880_RS12925 dcc8fa82ebdc81c88f80166300b3b154 433 Pfam PF12704 MacB-like periplasmic core domain 46 260 4.8E-18 T 29-03-2018 IPR025857 MacB-like periplasmic core domain Y880_RS12740 3536b627110c00a26d72cebc04b77b8f 398 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 80 1.5E-37 T 29-03-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS12740 3536b627110c00a26d72cebc04b77b8f 398 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 392 54.776 T 29-03-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS12740 3536b627110c00a26d72cebc04b77b8f 398 Pfam PF07055 Enoyl reductase FAD binding domain 323 386 2.4E-29 T 29-03-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS12740 3536b627110c00a26d72cebc04b77b8f 398 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 1.9E-107 T 29-03-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 Gene3D G3DSA:3.40.50.720 160 420 5.9E-83 T 29-03-2018 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 SMART SM01274 17 150 2.0E-76 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 Pfam PF03949 Malic enzyme, NAD binding domain 164 354 3.5E-26 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 Gene3D G3DSA:3.40.50.10380 4 159 2.0E-34 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 ProSitePatterns PS00331 Malic enzymes signature. 158 174 - T 29-03-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 SUPERFAMILY SSF51735 162 412 1.18E-83 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 SUPERFAMILY SSF53223 9 160 5.47E-51 T 29-03-2018 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 PIRSF PIRSF000106 45 419 2.1E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 SMART SM00919 162 398 3.8E-144 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y880_RS23785 030c9532250e8bae1a2610cbbf37b4d8 422 Pfam PF00390 Malic enzyme, N-terminal domain 19 148 1.8E-25 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y880_RS02125 af56582bbe2e510d2b80bac117f0b202 157 Pfam PF04343 Protein of unknown function, DUF488 29 136 1.3E-29 T 29-03-2018 IPR007438 Protein of unknown function DUF488 Y880_RS24090 e46b0db9978d0a590b5ee0c8939ead7e 453 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 452 3.4E-218 T 29-03-2018 IPR010252 Formiminoglutamate deiminase Y880_RS24090 e46b0db9978d0a590b5ee0c8939ead7e 453 SUPERFAMILY SSF51556 50 375 1.28E-73 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS24090 e46b0db9978d0a590b5ee0c8939ead7e 453 Gene3D G3DSA:3.20.20.140 48 360 9.6E-47 T 29-03-2018 Y880_RS24090 e46b0db9978d0a590b5ee0c8939ead7e 453 Gene3D G3DSA:2.30.40.10 361 437 4.9E-8 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS24090 e46b0db9978d0a590b5ee0c8939ead7e 453 Pfam PF01979 Amidohydrolase family 48 428 1.2E-37 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS24090 e46b0db9978d0a590b5ee0c8939ead7e 453 SUPERFAMILY SSF51338 359 436 2.8E-13 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 Pfam PF00108 Thiolase, N-terminal domain 8 257 2.0E-84 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 7 391 1.9E-231 T 29-03-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 Gene3D G3DSA:3.40.47.10 5 261 1.0E-54 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 Pfam PF02803 Thiolase, C-terminal domain 266 390 1.1E-47 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 SUPERFAMILY SSF53901 4 262 1.28E-78 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 389 1.6E-134 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 SUPERFAMILY SSF53901 266 390 2.88E-42 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 Gene3D G3DSA:3.40.47.10 262 388 1.9E-30 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 5 391 59.992 T 29-03-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 Y880_RS13065 26630f2ff88bda02d6acbfc9c92e4550 391 PIRSF PIRSF000429 2 391 5.0E-132 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 9.7E-25 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 352 381 9.7E-25 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 323 350 9.7E-25 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SMART SM00086 212 254 0.064 T 29-03-2018 IPR001610 PAC motif Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SMART SM00086 92 134 2.7E-4 T 29-03-2018 IPR001610 PAC motif Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SMART SM00283 226 431 3.2E-16 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 260 3.0E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 134 3.8E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SUPERFAMILY SSF55785 30 132 2.44E-23 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SMART SM00091 17 87 4.3 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SMART SM00091 139 207 0.0036 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SUPERFAMILY SSF55785 152 252 1.05E-20 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 Gene3D G3DSA:3.40.50.10600 11 131 1.4E-29 T 29-03-2018 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 Gene3D G3DSA:3.40.50.10600 134 255 9.7E-27 T 29-03-2018 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 Gene3D G3DSA:1.10.287.950 256 430 3.3E-40 T 29-03-2018 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 298 427 5.3E-33 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 Pfam PF13426 PAS domain 36 132 1.4E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 Pfam PF13426 PAS domain 154 253 1.5E-13 T 29-03-2018 IPR000014 PAS domain Y880_RS06815 323ddb524642ab33787d9beb4f962a44 431 SUPERFAMILY SSF58104 250 428 1.44E-49 T 29-03-2018 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 SUPERFAMILY SSF53850 100 311 3.44E-31 T 29-03-2018 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 SUPERFAMILY SSF46785 12 122 1.75E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 5.9E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 5.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 5.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 5.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 Gene3D G3DSA:3.40.190.10 188 277 1.6E-10 T 29-03-2018 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 Gene3D G3DSA:3.40.190.10 99 187 3.9E-17 T 29-03-2018 Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 Gene3D G3DSA:1.10.10.10 9 95 2.9E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12580 c92b710eae935c55ab7721278ce5d882 329 Pfam PF03466 LysR substrate binding domain 99 306 5.0E-31 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 SUPERFAMILY SSF75620 12 355 1.23E-134 T 29-03-2018 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 Pfam PF00472 RF-1 domain 216 323 3.5E-42 T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 SMART SM00937 65 180 9.7E-67 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 9.6E-167 T 29-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 Pfam PF03462 PCRF domain 13 205 2.5E-73 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 Gene3D G3DSA:3.30.160.20 211 293 2.0E-34 T 29-03-2018 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 Gene3D G3DSA:1.20.58.410 2 95 5.6E-18 T 29-03-2018 Y880_RS21695 6b157e243d4e8eb91bac7103e649cf7f 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 40.992 T 29-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Y880_RS23980 a812dc019b9a50251b45621e6ea6a034 416 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 3 408 54.319 T 29-03-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 Y880_RS23980 a812dc019b9a50251b45621e6ea6a034 416 SUPERFAMILY SSF51905 112 269 9.19E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23980 a812dc019b9a50251b45621e6ea6a034 416 SUPERFAMILY SSF51905 4 56 9.19E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23980 a812dc019b9a50251b45621e6ea6a034 416 SUPERFAMILY SSF51905 357 406 9.19E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23980 a812dc019b9a50251b45621e6ea6a034 416 SUPERFAMILY SSF54373 267 357 1.31E-13 T 29-03-2018 Y880_RS23980 a812dc019b9a50251b45621e6ea6a034 416 Gene3D G3DSA:3.50.50.60 2 411 7.3E-42 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23980 a812dc019b9a50251b45621e6ea6a034 416 Pfam PF01266 FAD dependent oxidoreductase 4 394 3.0E-65 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 282 2.6E-110 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 Gene3D G3DSA:3.30.70.260 1 83 1.8E-23 T 29-03-2018 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 282 49.118 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 SUPERFAMILY SSF55021 3 84 1.75E-14 T 29-03-2018 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 8.8E-64 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 8.8E-64 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 8.8E-64 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 8.8E-64 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 8.8E-64 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 8.8E-64 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 Gene3D G3DSA:3.40.50.170 84 280 6.6E-55 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 SUPERFAMILY SSF53328 87 283 1.96E-62 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 Pfam PF00551 Formyl transferase 87 261 8.0E-39 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS19855 157725f751454ca11ae9737cff042b70 283 PIRSF PIRSF036480 1 283 3.3E-119 T 29-03-2018 Y880_RS25730 c9338df0d8326f2f057a116ce13a5b92 416 Gene3D G3DSA:3.50.50.60 30 416 3.1E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25730 c9338df0d8326f2f057a116ce13a5b92 416 SUPERFAMILY SSF51905 33 254 2.1E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25730 c9338df0d8326f2f057a116ce13a5b92 416 SUPERFAMILY SSF51905 344 403 2.1E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25730 c9338df0d8326f2f057a116ce13a5b92 416 Pfam PF01266 FAD dependent oxidoreductase 34 380 2.1E-55 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS25730 c9338df0d8326f2f057a116ce13a5b92 416 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 3 408 2.0E-234 T 29-03-2018 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y880_RS10095 f48f823efdf65853e520d56e2bf53873 143 Gene3D G3DSA:3.10.180.10 1 136 3.2E-26 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS10095 f48f823efdf65853e520d56e2bf53873 143 SUPERFAMILY SSF54593 10 134 5.5E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS10095 f48f823efdf65853e520d56e2bf53873 143 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 134 3.0E-13 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS28360 89fac71e486e96c45307372683095943 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 41.268 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 9.9E-48 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 9.9E-48 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 9.9E-48 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 9.9E-48 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 9.9E-48 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 Pfam PF00303 Thymidylate synthase 2 264 6.5E-126 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 29-03-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 4.2E-41 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 1.6E-96 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 Gene3D G3DSA:3.30.572.10 1 264 1.6E-132 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS28360 89fac71e486e96c45307372683095943 264 SUPERFAMILY SSF55831 1 264 2.09E-131 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 SMART SM00738 2 111 6.3E-48 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 Pfam PF02357 Transcription termination factor nusG 3 108 2.8E-28 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 SUPERFAMILY SSF82679 3 113 6.54E-39 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 Gene3D G3DSA:2.30.30.30 118 177 3.2E-22 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 SUPERFAMILY SSF50104 121 177 1.16E-19 T 29-03-2018 IPR008991 Translation protein SH3-like domain Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 SMART SM00739 123 150 1.4E-7 T 29-03-2018 IPR005824 KOW Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 Gene3D G3DSA:3.30.70.940 2 115 5.6E-42 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 177 1.3E-66 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 29-03-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 24.831 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 8.4E-20 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 8.4E-20 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 8.4E-20 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y880_RS19630 f76fd1bd210e72ef0403b96843785b58 177 Pfam PF00467 KOW motif 126 156 5.1E-9 T 29-03-2018 IPR005824 KOW Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 Gene3D G3DSA:1.20.1640.10 288 501 2.6E-44 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82866 295 489 2.35E-48 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 Gene3D G3DSA:3.30.2090.10 181 267 2.3E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 Gene3D G3DSA:1.20.1640.10 785 1007 4.3E-42 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 Gene3D G3DSA:3.30.70.1430 41 141 3.4E-22 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82714 699 785 3.66E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82714 183 264 1.27E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82693 553 650 1.2E-15 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.0E-71 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 Gene3D G3DSA:3.30.70.1430 555 649 1.4E-5 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82866 783 1006 1.31E-43 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 Gene3D G3DSA:3.30.2090.10 698 784 1.9E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82693 267 323 1.02E-19 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82693 137 181 1.02E-19 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 SUPERFAMILY SSF82693 42 130 7.67E-21 T 29-03-2018 Y880_RS19310 a21baa5313d8bdff78f34bfb1fa5170f 1029 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 6.5E-270 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:2.40.160.50 388 794 6.2E-92 T 29-03-2018 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 91 172 1.8E-15 T 29-03-2018 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 794 25.941 T 29-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 265 343 4.3E-15 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 92 171 1.8E-13 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 175 262 2.3E-17 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 347 420 1.0E-15 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 173 262 2.2E-23 T 29-03-2018 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 23 794 2.0E-266 T 29-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 349 387 0.012 T 29-03-2018 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 PIRSF PIRSF006076 1 794 4.6E-266 T 29-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 19 90 2.2E-7 T 29-03-2018 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF01103 Surface antigen 447 794 1.6E-96 T 29-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Y880_RS16395 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 263 342 1.9E-15 T 29-03-2018 Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 172 3.5E-42 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 Gene3D G3DSA:3.40.50.970 338 530 1.8E-39 T 29-03-2018 Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 SUPERFAMILY SSF52518 355 529 7.92E-48 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 Gene3D G3DSA:3.40.50.970 4 184 1.3E-36 T 29-03-2018 Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 SUPERFAMILY SSF52467 189 345 6.78E-62 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 Gene3D G3DSA:3.40.50.1220 185 337 2.2E-23 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 386 525 6.3E-29 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 329 3.1E-17 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 SUPERFAMILY SSF52518 8 174 1.21E-38 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS23020 43b5c9500371a8ca206bf39f5a27c7de 532 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 415 434 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y880_RS05655 e955c069a1ae337f3290f023d7d8891a 432 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 164 415 1.2E-94 T 29-03-2018 IPR032034 Yop protein translocation protein D, periplasmic domain Y880_RS05655 e955c069a1ae337f3290f023d7d8891a 432 Gene3D G3DSA:2.60.200.20 1 64 2.9E-5 T 29-03-2018 Y880_RS05655 e955c069a1ae337f3290f023d7d8891a 432 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 3 415 1.1E-78 T 29-03-2018 IPR012843 Type III secretion system YscD/HrpQ Y880_RS05655 e955c069a1ae337f3290f023d7d8891a 432 Pfam PF16697 Inner membrane component of T3SS, cytoplasmic domain 6 98 6.1E-20 T 29-03-2018 IPR032030 YscD, cytoplasmic domain Y880_RS14485 3da750b2fd5b7825be15616bc17662d6 373 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 282 371 7.1E-22 T 29-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS14485 3da750b2fd5b7825be15616bc17662d6 373 SUPERFAMILY SSF53901 4 372 1.71E-52 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS14485 3da750b2fd5b7825be15616bc17662d6 373 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 227 1.5E-17 T 29-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS14485 3da750b2fd5b7825be15616bc17662d6 373 Gene3D G3DSA:3.40.47.10 220 373 2.4E-22 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS14485 3da750b2fd5b7825be15616bc17662d6 373 Gene3D G3DSA:3.40.47.10 2 219 6.7E-36 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS20010 03beeacab64e950f5c0c459e288933f0 196 Gene3D G3DSA:2.40.128.110 16 196 2.2E-23 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS20010 03beeacab64e950f5c0c459e288933f0 196 SMART SM00867 20 189 1.0E-18 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS20010 03beeacab64e950f5c0c459e288933f0 196 Pfam PF04264 YceI-like domain 21 162 1.2E-12 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS20010 03beeacab64e950f5c0c459e288933f0 196 SUPERFAMILY SSF101874 19 188 5.49E-22 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS20010 03beeacab64e950f5c0c459e288933f0 196 PIRSF PIRSF029811 1 191 3.9E-69 T 29-03-2018 IPR027016 Uncharacterised protein with YceI domain Y880_RS29310 8abb27d7832510305658e76238c9aa5f 465 Gene3D G3DSA:1.20.210.10 5 461 1.9E-73 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS29310 8abb27d7832510305658e76238c9aa5f 465 SUPERFAMILY SSF81442 12 458 2.75E-89 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS29310 8abb27d7832510305658e76238c9aa5f 465 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 203 259 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS29310 8abb27d7832510305658e76238c9aa5f 465 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 15 445 5.4E-83 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS23935 3a8404d75836b0c609fd317a4130d84d 320 Gene3D G3DSA:1.10.3720.10 8 320 8.7E-55 T 29-03-2018 Y880_RS23935 3a8404d75836b0c609fd317a4130d84d 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 316 3.3E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS23935 3a8404d75836b0c609fd317a4130d84d 320 SUPERFAMILY SSF161098 117 302 7.85E-46 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS23935 3a8404d75836b0c609fd317a4130d84d 320 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 117 211 7.2E-27 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS26300 f42edf6f36caa10457da5957967c1d82 455 SMART SM01230 117 373 1.6E-98 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS26300 f42edf6f36caa10457da5957967c1d82 455 SUPERFAMILY SSF55931 118 453 9.32E-104 T 29-03-2018 Y880_RS26300 f42edf6f36caa10457da5957967c1d82 455 Gene3D G3DSA:3.30.590.10 118 455 1.4E-95 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y880_RS26300 f42edf6f36caa10457da5957967c1d82 455 Pfam PF00120 Glutamine synthetase, catalytic domain 118 451 4.8E-106 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS26300 f42edf6f36caa10457da5957967c1d82 455 Gene3D G3DSA:3.10.20.70 6 117 5.7E-12 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS26300 f42edf6f36caa10457da5957967c1d82 455 SUPERFAMILY SSF54368 9 111 5.36E-8 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 PIRSF PIRSF001589 1 609 6.8E-142 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 SUPERFAMILY SSF56235 1 224 1.54E-62 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 Pfam PF00733 Asparagine synthase 243 580 9.2E-96 T 29-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 Gene3D G3DSA:3.40.50.620 226 580 6.6E-63 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 532 4.9E-149 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 SUPERFAMILY SSF52402 233 394 4.44E-69 T 29-03-2018 Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 SUPERFAMILY SSF52402 452 574 4.44E-69 T 29-03-2018 Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 Pfam PF13537 Glutamine amidotransferase domain 48 167 1.3E-45 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain Y880_RS07600 1ee128c511fab4381064006fdd894eac 610 Gene3D G3DSA:3.60.20.10 1 225 6.4E-55 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 Gene3D G3DSA:3.40.190.10 179 260 1.8E-13 T 29-03-2018 Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 Gene3D G3DSA:3.40.190.10 84 178 2.0E-17 T 29-03-2018 Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 Pfam PF03466 LysR substrate binding domain 87 274 1.9E-37 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 SUPERFAMILY SSF46785 1 110 8.44E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 Gene3D G3DSA:1.10.10.10 1 83 2.9E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 5.9E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10415 d6ba28f06de4da46cfcf983b701104a9 298 SUPERFAMILY SSF53850 87 273 3.44E-31 T 29-03-2018 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 SUPERFAMILY SSF53850 89 290 4.52E-38 T 29-03-2018 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 Gene3D G3DSA:1.10.10.10 1 91 3.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 Gene3D G3DSA:3.40.190.10 92 176 1.6E-15 T 29-03-2018 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.4E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.5E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.5E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.5E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 Pfam PF03466 LysR substrate binding domain 88 286 3.4E-36 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 Gene3D G3DSA:3.40.190.10 177 256 2.6E-8 T 29-03-2018 Y880_RS02570 4cbed851749acf24fcc554b6025ad02f 291 SUPERFAMILY SSF46785 1 87 8.27E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18300 bd1bb94a39fcb7312c02836ddafa19e3 437 Pfam PF09335 SNARE associated Golgi protein 38 160 1.2E-18 T 29-03-2018 IPR032816 SNARE associated Golgi protein Y880_RS18300 bd1bb94a39fcb7312c02836ddafa19e3 437 Pfam PF01569 PAP2 superfamily 285 397 5.0E-21 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS18300 bd1bb94a39fcb7312c02836ddafa19e3 437 SUPERFAMILY SSF48317 208 418 6.07E-45 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS18300 bd1bb94a39fcb7312c02836ddafa19e3 437 SMART SM00014 281 391 5.4E-16 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS18300 bd1bb94a39fcb7312c02836ddafa19e3 437 Gene3D G3DSA:1.20.144.10 234 403 2.9E-29 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 Pfam PF07729 FCD domain 90 213 1.0E-27 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 SUPERFAMILY SSF46785 3 74 6.27E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 Gene3D G3DSA:1.10.10.10 1 78 5.9E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 SUPERFAMILY SSF48008 88 218 6.54E-28 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 SMART SM00345 11 70 1.7E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 3.8E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 3.8E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 SMART SM00895 90 214 3.2E-21 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 Gene3D G3DSA:1.20.120.530 83 224 1.4E-29 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS27215 75576a5e1005595b5fe99fccfe283e38 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 4.2E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 25 490 4.0E-110 T 29-03-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 Gene3D G3DSA:3.30.870.10 116 295 1.8E-32 T 29-03-2018 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 SUPERFAMILY SSF56024 117 319 9.42E-51 T 29-03-2018 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 SUPERFAMILY SSF56024 281 469 5.16E-47 T 29-03-2018 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 Pfam PF13091 PLD-like domain 149 289 5.2E-7 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 Pfam PF13091 PLD-like domain 331 456 7.8E-28 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 SMART SM00155 229 256 1.7E-4 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 SMART SM00155 403 430 3.1E-6 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 Pfam PF13396 Phospholipase_D-nuclease N-terminal 30 71 7.1E-5 T 29-03-2018 IPR027379 Cardiolipin synthase N-terminal Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 Hamap MF_00190 Cardiolipin synthase A [clsA]. 13 490 45.894 T 29-03-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 Y880_RS25620 0c6030e9342e82ea418831b7a54ec75d 490 Gene3D G3DSA:3.30.870.10 328 482 1.8E-31 T 29-03-2018 Y880_RS00025 75da13ad9d1652e0342dc44a3d212653 198 SUPERFAMILY SSF48613 14 196 5.72E-55 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS00025 75da13ad9d1652e0342dc44a3d212653 198 Gene3D G3DSA:1.20.910.10 1 198 1.9E-26 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS00025 75da13ad9d1652e0342dc44a3d212653 198 Pfam PF01126 Heme oxygenase 15 194 4.7E-35 T 29-03-2018 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS10245 0753fed3351654e26cbc3e452f3e1a94 447 Pfam PF13487 HD domain 263 322 2.0E-17 T 29-03-2018 Y880_RS10245 0753fed3351654e26cbc3e452f3e1a94 447 Gene3D G3DSA:3.40.50.2300 7 174 1.8E-35 T 29-03-2018 Y880_RS10245 0753fed3351654e26cbc3e452f3e1a94 447 SUPERFAMILY SSF52172 15 179 5.27E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS10245 0753fed3351654e26cbc3e452f3e1a94 447 SUPERFAMILY SSF109604 226 377 2.51E-11 T 29-03-2018 Y880_RS10245 0753fed3351654e26cbc3e452f3e1a94 447 SMART SM00448 15 127 1.6E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10245 0753fed3351654e26cbc3e452f3e1a94 447 Pfam PF00072 Response regulator receiver domain 17 126 3.7E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10245 0753fed3351654e26cbc3e452f3e1a94 447 Gene3D G3DSA:1.10.3210.10 181 383 3.9E-17 T 29-03-2018 Y880_RS14130 2b70a44a495ec3df2b638589d1b34db2 111 SUPERFAMILY SSF50249 4 110 1.91E-32 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS14130 2b70a44a495ec3df2b638589d1b34db2 111 Pfam PF01588 Putative tRNA binding domain 14 108 2.5E-17 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Y880_RS14130 2b70a44a495ec3df2b638589d1b34db2 111 Gene3D G3DSA:2.40.50.140 1 111 1.8E-22 T 29-03-2018 Y880_RS14130 2b70a44a495ec3df2b638589d1b34db2 111 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 6 110 8.9E-50 T 29-03-2018 IPR008231 Probable chaperone CsaA Y880_RS25945 0260cf86cf981d6cc836cf5a4b61a97d 304 Pfam PF16363 GDP-mannose 4,6 dehydratase 36 291 5.0E-49 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25945 0260cf86cf981d6cc836cf5a4b61a97d 304 SUPERFAMILY SSF51735 4 299 1.71E-67 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25945 0260cf86cf981d6cc836cf5a4b61a97d 304 Gene3D G3DSA:3.40.50.720 2 180 3.3E-24 T 29-03-2018 Y880_RS25945 0260cf86cf981d6cc836cf5a4b61a97d 304 Gene3D G3DSA:3.90.25.10 181 303 2.5E-31 T 29-03-2018 Y880_RS02145 3a2b2e740c75f57a3e3a83a2e026a979 764 Gene3D G3DSA:1.25.40.10 462 751 1.2E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS02145 3a2b2e740c75f57a3e3a83a2e026a979 764 SUPERFAMILY SSF48452 393 438 1.57E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS02145 3a2b2e740c75f57a3e3a83a2e026a979 764 SUPERFAMILY SSF48452 485 529 1.57E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS02145 3a2b2e740c75f57a3e3a83a2e026a979 764 SUPERFAMILY SSF48452 195 293 1.57E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS02145 3a2b2e740c75f57a3e3a83a2e026a979 764 Gene3D G3DSA:1.25.40.10 20 381 4.6E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS02145 3a2b2e740c75f57a3e3a83a2e026a979 764 Gene3D G3DSA:1.25.40.10 382 461 0.0038 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS02145 3a2b2e740c75f57a3e3a83a2e026a979 764 SUPERFAMILY SSF48452 469 536 3.13E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 SMART SM00984 320 424 2.3E-51 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 SUPERFAMILY SSF52413 311 435 6.67E-41 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 1.8E-31 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 7.1E-60 T 29-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 PIRSF PIRSF000124 1 439 3.5E-142 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 SUPERFAMILY SSF48179 204 301 1.5E-32 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 3.5E-135 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 SUPERFAMILY SSF51735 1 195 2.22E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 3.5E-36 T 29-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 Gene3D G3DSA:3.40.50.720 1 202 2.4E-57 T 29-03-2018 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 PIRSF PIRSF500134 1 442 8.1E-182 T 29-03-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 Gene3D G3DSA:3.40.50.720 228 436 2.8E-73 T 29-03-2018 Y880_RS15915 f7fb40510fc821aef36fc75a4b17f84a 464 Gene3D G3DSA:1.20.5.100 205 227 5.8E-14 T 29-03-2018 Y880_RS16495 526f1b9f5eb060e575df91b016ef7f44 140 SUPERFAMILY SSF82649 6 136 7.32E-43 T 29-03-2018 Y880_RS16495 526f1b9f5eb060e575df91b016ef7f44 140 Gene3D G3DSA:3.90.1010.10 2 138 5.4E-43 T 29-03-2018 Y880_RS16495 526f1b9f5eb060e575df91b016ef7f44 140 Pfam PF02657 Fe-S metabolism associated domain 15 133 1.6E-38 T 29-03-2018 IPR003808 Fe-S metabolism associated domain, SufE-like Y880_RS05740 9a7020f4d5fbb93b4bbd65b9d339f23e 243 Pfam PF00227 Proteasome subunit 4 182 4.8E-9 T 29-03-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-446652|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8941858|Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y880_RS05740 9a7020f4d5fbb93b4bbd65b9d339f23e 243 SUPERFAMILY SSF56235 2 237 2.24E-36 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS05740 9a7020f4d5fbb93b4bbd65b9d339f23e 243 PIRSF PIRSF009120 1 242 4.6E-106 T 29-03-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 Y880_RS05740 9a7020f4d5fbb93b4bbd65b9d339f23e 243 Gene3D G3DSA:3.60.20.10 2 224 3.7E-40 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS01185 12c2775a5c532d6b7059b3aaa78a1daf 275 PIRSF PIRSF015582 1 275 2.4E-73 T 29-03-2018 IPR011206 Citrate lyase beta subunit-like Y880_RS01185 12c2775a5c532d6b7059b3aaa78a1daf 275 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 7 215 4.0E-29 T 29-03-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Y880_RS01185 12c2775a5c532d6b7059b3aaa78a1daf 275 Gene3D G3DSA:3.20.20.360 1 249 1.1E-46 T 29-03-2018 Y880_RS01185 12c2775a5c532d6b7059b3aaa78a1daf 275 SUPERFAMILY SSF51621 4 227 1.36E-58 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 Pfam PF04055 Radical SAM superfamily 151 325 1.4E-28 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 8.7E-28 T 29-03-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 442 73.698 T 29-03-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 Pfam PF01938 TRAM domain 378 441 1.0E-19 T 29-03-2018 IPR002792 TRAM domain Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 29-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 441 1.5E-185 T 29-03-2018 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 SMART SM00729 147 367 3.4E-58 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 SUPERFAMILY SSF102114 125 375 2.62E-61 T 29-03-2018 Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 Gene3D G3DSA:3.80.30.20 144 381 2.9E-51 T 29-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe Y880_RS18150 c5b818880f98b35f956258f84429ea24 446 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 438 7.4E-150 T 29-03-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Y880_RS17735 d25e4618f67c4c4ec5510c654766e7a7 153 Gene3D G3DSA:3.40.1420.10 28 146 2.7E-38 T 29-03-2018 Y880_RS17735 d25e4618f67c4c4ec5510c654766e7a7 153 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 36 151 1.9E-42 T 29-03-2018 Y880_RS17735 d25e4618f67c4c4ec5510c654766e7a7 153 PIRSF PIRSF009103 1 153 7.9E-63 T 29-03-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 Y880_RS17735 d25e4618f67c4c4ec5510c654766e7a7 153 SUPERFAMILY SSF89872 25 153 2.49E-51 T 29-03-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 Y880_RS20860 a77e3ef68dc3c7be462af7adaf1c1dbb 225 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 1.7E-47 T 29-03-2018 IPR010016 KipI family Y880_RS20860 a77e3ef68dc3c7be462af7adaf1c1dbb 225 SUPERFAMILY SSF160467 3 96 1.96E-16 T 29-03-2018 Y880_RS20860 a77e3ef68dc3c7be462af7adaf1c1dbb 225 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 3 202 4.2E-67 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y880_RS20860 a77e3ef68dc3c7be462af7adaf1c1dbb 225 SMART SM00796 2 202 3.2E-93 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y880_RS20860 a77e3ef68dc3c7be462af7adaf1c1dbb 225 Gene3D G3DSA:3.30.1360.40 1 87 6.3E-17 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 Y880_RS20860 a77e3ef68dc3c7be462af7adaf1c1dbb 225 Gene3D G3DSA:2.40.100.10 89 220 2.1E-46 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS20860 a77e3ef68dc3c7be462af7adaf1c1dbb 225 SUPERFAMILY SSF50891 91 218 1.74E-41 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS23745 a877ad8667e2ba3d74e4b5a2c8a9bd41 368 Gene3D G3DSA:1.20.1090.10 171 359 3.8E-64 T 29-03-2018 Y880_RS23745 a877ad8667e2ba3d74e4b5a2c8a9bd41 368 SUPERFAMILY SSF56796 3 354 9.94E-120 T 29-03-2018 Y880_RS23745 a877ad8667e2ba3d74e4b5a2c8a9bd41 368 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 356 42.818 T 29-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y880_RS23745 a877ad8667e2ba3d74e4b5a2c8a9bd41 368 Pfam PF01761 3-dehydroquinate synthase 65 323 1.9E-108 T 29-03-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y880_RS23745 a877ad8667e2ba3d74e4b5a2c8a9bd41 368 Gene3D G3DSA:3.40.50.1970 8 170 7.7E-52 T 29-03-2018 Y880_RS23745 a877ad8667e2ba3d74e4b5a2c8a9bd41 368 PIRSF PIRSF001455 3 359 3.4E-107 T 29-03-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y880_RS23745 a877ad8667e2ba3d74e4b5a2c8a9bd41 368 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 348 1.8E-115 T 29-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y880_RS11560 af94e70ff67304009baba9017442898b 193 Pfam PF01966 HD domain 32 91 2.8E-8 T 29-03-2018 IPR006674 HD domain Y880_RS11560 af94e70ff67304009baba9017442898b 193 SUPERFAMILY SSF109604 29 103 1.41E-8 T 29-03-2018 Y880_RS11560 af94e70ff67304009baba9017442898b 193 TIGRFAM TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein 7 180 8.2E-76 T 29-03-2018 IPR017670 Phosphonate degradation operon associated HDIG domain protein Y880_RS11560 af94e70ff67304009baba9017442898b 193 Gene3D G3DSA:1.10.3210.10 14 140 4.0E-9 T 29-03-2018 Y880_RS21490 2c92eb444458bfdc24d87057a31cf590 323 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 227 243 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y880_RS21490 2c92eb444458bfdc24d87057a31cf590 323 SUPERFAMILY SSF51735 106 291 4.16E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS21490 2c92eb444458bfdc24d87057a31cf590 323 Gene3D G3DSA:3.40.50.720 7 117 3.4E-28 T 29-03-2018 Y880_RS21490 2c92eb444458bfdc24d87057a31cf590 323 SUPERFAMILY SSF52283 18 141 1.04E-28 T 29-03-2018 Y880_RS21490 2c92eb444458bfdc24d87057a31cf590 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 290 1.2E-51 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y880_RS21490 2c92eb444458bfdc24d87057a31cf590 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 21 320 1.0E-25 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Y880_RS21490 2c92eb444458bfdc24d87057a31cf590 323 Gene3D G3DSA:3.40.50.720 118 293 1.9E-48 T 29-03-2018 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 SUPERFAMILY SSF53271 69 305 6.07E-64 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 Gene3D G3DSA:3.40.50.2020 158 289 3.0E-41 T 29-03-2018 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 Pfam PF14572 Phosphoribosyl synthetase-associated domain 202 313 2.2E-32 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 2.1E-48 T 29-03-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 Gene3D G3DSA:3.40.50.2020 1 157 4.7E-66 T 29-03-2018 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 4 313 48.286 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 313 8.0E-124 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 29-03-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Y880_RS21725 c52b2898cfaabd9cdd6c9f648cf29019 313 SMART SM01400 4 121 1.0E-76 T 29-03-2018 Y880_RS06720 0585ba6662f3ffdf151be4f52a1db0cc 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 165 3.0E-22 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS06720 0585ba6662f3ffdf151be4f52a1db0cc 168 Gene3D G3DSA:1.10.10.10 109 164 9.1E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06720 0585ba6662f3ffdf151be4f52a1db0cc 168 Pfam PF08281 Sigma-70, region 4 112 163 2.5E-16 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS06720 0585ba6662f3ffdf151be4f52a1db0cc 168 Pfam PF04542 Sigma-70 region 2 15 80 9.1E-15 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS06720 0585ba6662f3ffdf151be4f52a1db0cc 168 Gene3D G3DSA:1.10.1740.10 4 84 8.3E-16 T 29-03-2018 Y880_RS06720 0585ba6662f3ffdf151be4f52a1db0cc 168 SUPERFAMILY SSF88946 10 100 9.02E-15 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS06720 0585ba6662f3ffdf151be4f52a1db0cc 168 SUPERFAMILY SSF88659 90 166 2.62E-15 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS18560 2d796d62d0cc59b181a3dc64464f35ab 234 Pfam PF00005 ABC transporter 24 178 2.5E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS18560 2d796d62d0cc59b181a3dc64464f35ab 234 SUPERFAMILY SSF52540 4 223 2.77E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS18560 2d796d62d0cc59b181a3dc64464f35ab 234 SMART SM00382 30 226 2.4E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS18560 2d796d62d0cc59b181a3dc64464f35ab 234 Gene3D G3DSA:3.40.50.300 1 226 1.3E-49 T 29-03-2018 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 SUPERFAMILY SSF51735 123 283 7.77E-51 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 8.0E-40 T 29-03-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.159 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 29-03-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 Gene3D G3DSA:3.40.50.10860 11 140 1.6E-49 T 29-03-2018 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 3.6E-67 T 29-03-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 Gene3D G3DSA:3.40.50.720 141 264 3.1E-38 T 29-03-2018 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 7.5E-84 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 7.5E-84 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 7.5E-84 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 7.5E-84 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 7.5E-84 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 7.5E-84 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 7.5E-84 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Y880_RS06075 ae52524c6292f844aebd870057fb6361 284 SUPERFAMILY SSF53223 1 122 4.7E-41 T 29-03-2018 Y880_RS13835 292896f9c781ea1fed9599133c689b58 369 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 226 235 - T 29-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 Y880_RS13835 292896f9c781ea1fed9599133c689b58 369 Gene3D G3DSA:3.40.640.10 50 260 8.6E-39 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS13835 292896f9c781ea1fed9599133c689b58 369 Pfam PF00155 Aminotransferase class I and II 38 362 5.0E-50 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS13835 292896f9c781ea1fed9599133c689b58 369 Gene3D G3DSA:3.90.1150.10 261 368 5.7E-26 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS13835 292896f9c781ea1fed9599133c689b58 369 SUPERFAMILY SSF53383 17 366 6.81E-81 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS13835 292896f9c781ea1fed9599133c689b58 369 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 10 364 6.2E-117 T 29-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y880_RS13835 292896f9c781ea1fed9599133c689b58 369 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 7 366 62.747 T 29-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 SUPERFAMILY SSF53067 12 177 1.38E-13 T 29-03-2018 Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 Gene3D G3DSA:3.30.420.40 186 302 3.4E-15 T 29-03-2018 Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 8 353 7.4E-152 T 29-03-2018 IPR005883 Type IV pilus assembly protein PilM Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 Gene3D G3DSA:3.30.420.40 1 172 7.8E-35 T 29-03-2018 Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 Gene3D G3DSA:3.30.420.40 303 354 4.6E-7 T 29-03-2018 Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 Pfam PF11104 Type IV pilus assembly protein PilM; 14 353 3.0E-139 T 29-03-2018 IPR005883 Type IV pilus assembly protein PilM Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 PIRSF PIRSF019169 1 354 1.6E-124 T 29-03-2018 IPR005883 Type IV pilus assembly protein PilM Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 SUPERFAMILY SSF53067 193 352 7.47E-27 T 29-03-2018 Y880_RS23775 a54a28f9eed201302b52ba8cc15f5b80 354 SMART SM00842 12 181 7.9E-5 T 29-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 ProSitePatterns PS01287 RNA 3'-terminal phosphate cyclase signature. 156 166 - T 29-03-2018 IPR020719 RNA 3'-terminal phosphate cyclase-like, conserved site Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 Pfam PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain 208 253 1.1E-4 T 29-03-2018 IPR013791 RNA 3'-terminal phosphate cyclase, insert domain Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 TIGRFAM TIGR03399 RNA_3prim_cycl: RNA 3'-phosphate cyclase 6 184 2.9E-80 T 29-03-2018 IPR017770 RNA 3'-terminal phosphate cyclase type 1 GO:0003963|GO:0006396 Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 Hamap MF_00200 RNA 3'-terminal phosphate cyclase [rtcA]. 5 319 35.999 T 29-03-2018 IPR017770 RNA 3'-terminal phosphate cyclase type 1 GO:0003963|GO:0006396 Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 SUPERFAMILY SSF55205 252 312 7.85E-7 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 SUPERFAMILY SSF55205 5 175 7.85E-58 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 SUPERFAMILY SSF52913 187 259 9.94E-16 T 29-03-2018 IPR013791 RNA 3'-terminal phosphate cyclase, insert domain Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 Pfam PF01137 RNA 3'-terminal phosphate cyclase 12 305 9.4E-77 T 29-03-2018 IPR023797 RNA 3'-terminal phosphate cyclase domain Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 Gene3D G3DSA:3.65.10.20 5 187 5.7E-67 T 29-03-2018 IPR023797 RNA 3'-terminal phosphate cyclase domain Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 Gene3D G3DSA:3.65.10.20 188 311 1.7E-19 T 29-03-2018 IPR023797 RNA 3'-terminal phosphate cyclase domain Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 PIRSF PIRSF005378 193 320 4.8E-21 T 29-03-2018 IPR000228 RNA 3'-terminal phosphate cyclase GO:0006396 Y880_RS21265 643c9237c82050afd61e17f4ff4f7a80 322 PIRSF PIRSF005378 2 198 6.5E-69 T 29-03-2018 IPR000228 RNA 3'-terminal phosphate cyclase GO:0006396 Y880_RS28255 a26acc4d4c29ac00d76b2924f1b58995 262 SUPERFAMILY SSF161098 6 260 1.7E-57 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28255 a26acc4d4c29ac00d76b2924f1b58995 262 Gene3D G3DSA:1.10.3720.10 13 262 1.0E-41 T 29-03-2018 Y880_RS28255 a26acc4d4c29ac00d76b2924f1b58995 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 259 2.7E-16 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 101 4.3E-40 T 29-03-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 29-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 SUPERFAMILY SSF55973 234 395 3.26E-67 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 PIRSF PIRSF000497 1 394 8.8E-168 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 29-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 SUPERFAMILY SSF55973 6 110 2.2E-44 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 394 55.914 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 Gene3D G3DSA:3.30.300.10 12 126 8.1E-42 T 29-03-2018 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 4.3E-42 T 29-03-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 Gene3D G3DSA:3.30.300.10 127 235 7.1E-40 T 29-03-2018 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 367 1.5E-66 T 29-03-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 SUPERFAMILY SSF55973 112 233 3.53E-50 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 392 7.7E-182 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y880_RS29430 7646caaf1f9b53bed8d20a9ffc40923e 396 Gene3D G3DSA:3.30.300.10 249 396 2.5E-48 T 29-03-2018 Y880_RS28035 f32c298990118010e9c90480e2c0a2c0 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 270 2.5E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28035 f32c298990118010e9c90480e2c0a2c0 272 SUPERFAMILY SSF161098 15 267 1.7E-56 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28035 f32c298990118010e9c90480e2c0a2c0 272 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 8 270 2.6E-128 T 29-03-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 Y880_RS28035 f32c298990118010e9c90480e2c0a2c0 272 Gene3D G3DSA:1.10.3720.10 11 271 6.7E-47 T 29-03-2018 Y880_RS28035 f32c298990118010e9c90480e2c0a2c0 272 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 268 2.1E-93 T 29-03-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 SUPERFAMILY SSF53850 96 281 1.19E-60 T 29-03-2018 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 Pfam PF01842 ACT domain 283 348 9.9E-11 T 29-03-2018 IPR002912 ACT domain Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 Pfam PF00800 Prephenate dehydratase 97 274 1.4E-62 T 29-03-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 Gene3D G3DSA:1.20.59.10 1 103 2.9E-36 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 PIRSF PIRSF001500 1 365 8.1E-149 T 29-03-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 SUPERFAMILY SSF55021 267 362 4.93E-28 T 29-03-2018 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 Gene3D G3DSA:3.40.190.10 104 185 3.2E-32 T 29-03-2018 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 310 317 - T 29-03-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 248 270 - T 29-03-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 SMART SM00830 11 95 1.1E-26 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 Gene3D G3DSA:3.30.70.260 274 364 3.5E-28 T 29-03-2018 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 Gene3D G3DSA:3.40.190.10 186 261 2.8E-29 T 29-03-2018 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 SUPERFAMILY SSF48600 6 99 2.75E-19 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 Pfam PF01817 Chorismate mutase type II 11 93 1.9E-22 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS13840 1152d5e4401b8095769bd361b4ce450a 365 TIGRFAM TIGR01807 CM_P2: chorismate mutase 7 85 5.4E-32 T 29-03-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 1.7E-39 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.179 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 6.0E-17 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.9E-38 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 SUPERFAMILY SSF110324 2 80 2.13E-33 T 29-03-2018 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 Gene3D G3DSA:2.40.50.100 20 85 1.9E-29 T 29-03-2018 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.6E-37 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.6E-37 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.6E-37 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21170 22408758d4a7dc69c3799fc8677dd1fa 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 29-03-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS26340 ef7ff4b6c107f2af303fe6e7547b6582 435 SUPERFAMILY SSF103473 21 430 4.84E-70 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS26340 ef7ff4b6c107f2af303fe6e7547b6582 435 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 29 415 4.3E-135 T 29-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 Y880_RS26340 ef7ff4b6c107f2af303fe6e7547b6582 435 Gene3D G3DSA:1.20.1250.20 13 226 8.5E-30 T 29-03-2018 Y880_RS26340 ef7ff4b6c107f2af303fe6e7547b6582 435 ProSitePatterns PS00216 Sugar transport proteins signature 1. 299 316 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS26340 ef7ff4b6c107f2af303fe6e7547b6582 435 ProSitePatterns PS00217 Sugar transport proteins signature 2. 132 157 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS26340 ef7ff4b6c107f2af303fe6e7547b6582 435 Pfam PF07690 Major Facilitator Superfamily 58 376 3.7E-30 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS26340 ef7ff4b6c107f2af303fe6e7547b6582 435 Gene3D G3DSA:1.20.1250.20 227 432 3.6E-27 T 29-03-2018 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 SUPERFAMILY SSF51215 29 174 1.83E-29 T 29-03-2018 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 Pfam PF12833 Helix-turn-helix domain 211 289 1.3E-16 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 242 284 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 Gene3D G3DSA:3.90.1240.10 183 255 7.2E-13 T 29-03-2018 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 Pfam PF02311 AraC-like ligand binding domain 44 153 1.8E-20 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 SMART SM00342 205 288 6.2E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 257 272 8.6E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 272 288 8.6E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 SUPERFAMILY SSF46689 191 236 1.34E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 Gene3D G3DSA:2.60.120.280 23 182 2.4E-21 T 29-03-2018 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 Gene3D G3DSA:1.10.10.60 256 292 3.0E-15 T 29-03-2018 Y880_RS00350 6dc476f89742711ed62fbe2baca5a382 293 SUPERFAMILY SSF46689 242 289 4.93E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 Pfam PF00206 Lyase 15 347 4.1E-97 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 Gene3D G3DSA:1.10.40.30 420 467 1.7E-19 T 29-03-2018 Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 1.9E-28 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 184 202 1.9E-28 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 139 157 1.9E-28 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 1.9E-28 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 8 467 1.7E-206 T 29-03-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 Gene3D G3DSA:1.10.275.10 5 142 2.3E-53 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 Pfam PF10415 Fumarase C C-terminus 413 465 3.1E-19 T 29-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 SUPERFAMILY SSF48557 7 465 1.31E-144 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS25800 a4bdbb1007e4faeaba40299645b7c143 474 Gene3D G3DSA:1.20.200.10 143 419 1.7E-78 T 29-03-2018 Y880_RS01385 e94d7b221ca2249955faeadda54124b1 427 SUPERFAMILY SSF53474 220 408 2.07E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS01385 e94d7b221ca2249955faeadda54124b1 427 Pfam PF06057 Bacterial virulence protein (VirJ) 232 421 3.0E-81 T 29-03-2018 IPR010333 Bacterial virulence Y880_RS01385 e94d7b221ca2249955faeadda54124b1 427 Gene3D G3DSA:3.40.50.1820 201 407 9.6E-17 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS01385 e94d7b221ca2249955faeadda54124b1 427 PIRSF PIRSF029063 3 426 4.8E-155 T 29-03-2018 IPR011225 Type IV secretory pathway, VirJ component Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 Gene3D G3DSA:2.60.40.10 3 85 6.4E-21 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 SUPERFAMILY SSF81296 5 92 1.66E-21 T 29-03-2018 IPR014756 Immunoglobulin E-set Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 Gene3D G3DSA:3.20.20.80 86 436 1.8E-69 T 29-03-2018 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 Pfam PF00128 Alpha amylase, catalytic domain 133 210 2.1E-8 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 7 70 2.1E-6 T 29-03-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 Gene3D G3DSA:1.10.10.760 437 470 1.6E-16 T 29-03-2018 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 19 536 2.2E-196 T 29-03-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 SMART SM00642 114 495 5.0E-8 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 Pfam PF11941 Domain of unknown function (DUF3459) 487 576 1.6E-16 T 29-03-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 PIRSF PIRSF006337 3 579 6.8E-226 T 29-03-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 Gene3D G3DSA:2.60.40.1180 510 580 1.7E-13 T 29-03-2018 Y880_RS08045 f213546bc67819d0a09b7ec72832db29 583 SUPERFAMILY SSF51445 89 498 3.66E-102 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS29560 8609443241e06fb4b89da032319f27c6 923 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 562 872 1.4E-7 T 29-03-2018 IPR031161 Peptidase family M60 domain Y880_RS29560 8609443241e06fb4b89da032319f27c6 923 SMART SM01276 450 795 1.3E-8 T 29-03-2018 IPR031161 Peptidase family M60 domain Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 Gene3D G3DSA:1.10.10.60 2 58 1.5E-14 T 29-03-2018 Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 Gene3D G3DSA:1.10.357.10 59 195 5.3E-21 T 29-03-2018 Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 SUPERFAMILY SSF46689 3 75 1.28E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.7E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.7E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 SUPERFAMILY SSF48498 80 191 4.45E-21 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 Pfam PF16925 Bacterial transcriptional repressor C-terminal 80 189 4.2E-18 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS00945 3b7ab75670e3680419082cb315acf610 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 7.9E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS17345 b06ea793df36cbe79f9fc0486cae2874 355 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 353 1.3E-66 T 29-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Y880_RS17345 b06ea793df36cbe79f9fc0486cae2874 355 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 353 2.5E-130 T 29-03-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 Y880_RS10675 00e41a6012b61b09098e2ba3c13833f2 467 Pfam PF01139 tRNA-splicing ligase RtcB 67 466 1.0E-90 T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS10675 00e41a6012b61b09098e2ba3c13833f2 467 SUPERFAMILY SSF103365 39 467 3.01E-102 T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 Pfam PF05860 haemagglutination activity domain 53 165 5.3E-27 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 SUPERFAMILY SSF51126 45 343 1.22E-43 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 22 1.2E-8 T 29-03-2018 IPR024973 ESPR domain Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 Pfam PF07581 The GLUG motif 718 741 5.5E-5 T 29-03-2018 IPR011493 GLUG Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 Pfam PF07581 The GLUG motif 647 677 0.0025 T 29-03-2018 IPR011493 GLUG Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 SMART SM00912 51 166 4.2E-45 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 Gene3D G3DSA:2.160.20.10 46 352 4.2E-54 T 29-03-2018 IPR012334 Pectin lyase fold Y880_RS18655 43158ba85725b390dd7a35da6fb1224b 1018 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 88 162 1.3E-27 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SMART SM00487 598 788 3.1E-35 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 25 1105 28.986 T 29-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 Pfam PF00270 DEAD/DEAH box helicase 603 763 9.6E-19 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SUPERFAMILY SSF141259 469 546 5.36E-23 T 29-03-2018 IPR003711 CarD-like/TRCF domain Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SUPERFAMILY SSF52540 522 781 1.36E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SMART SM01058 477 574 1.2E-48 T 29-03-2018 IPR003711 CarD-like/TRCF domain Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 148 1079 0.0 T 29-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 Gene3D G3DSA:3.40.50.300 448 786 3.0E-39 T 29-03-2018 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SMART SM00982 1006 1106 2.3E-50 T 29-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 Pfam PF03461 TRCF domain 1007 1098 6.3E-27 T 29-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 Gene3D G3DSA:3.40.50.300 787 954 5.2E-24 T 29-03-2018 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 Pfam PF02559 CarD-like/TRCF domain 478 573 2.6E-24 T 29-03-2018 IPR003711 CarD-like/TRCF domain Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 Pfam PF00271 Helicase conserved C-terminal domain 804 907 5.2E-16 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SUPERFAMILY SSF52540 351 464 1.89E-29 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SUPERFAMILY SSF143517 992 1144 1.01E-43 T 29-03-2018 Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SUPERFAMILY SSF52540 780 988 7.92E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SMART SM00490 824 908 1.2E-15 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS13010 0d93fbb22911ac7e7bbb3f5dc348713e 1148 SUPERFAMILY SSF52540 10 340 1.33E-107 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS27640 2250d7b33f03880815625ec8bfdab4ae 138 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 20 128 5.7E-34 T 29-03-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 3.1E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 3.1E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 3.1E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 Pfam PF00106 short chain dehydrogenase 10 196 3.9E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 SUPERFAMILY SSF51735 5 252 2.11E-62 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 2.4E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.4E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 2.4E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 2.4E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 2.4E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 2.4E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 Gene3D G3DSA:3.40.50.720 4 295 5.3E-62 T 29-03-2018 Y880_RS15250 0686cd3f5592442b300d9cb46c683779 303 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 184 3.4E-5 T 29-03-2018 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 Gene3D G3DSA:3.40.50.2300 2 127 3.1E-36 T 29-03-2018 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 SUPERFAMILY SSF52172 3 133 3.98E-33 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS29715 ce19a4b647afb21915221c6001467326 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 1.7E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 SMART SM00448 3 116 3.4E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.7E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.7E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.7E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 SUPERFAMILY SSF46894 138 209 3.4E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 SMART SM00421 147 204 1.4E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29715 ce19a4b647afb21915221c6001467326 210 Gene3D G3DSA:1.10.10.10 128 210 5.4E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29715 ce19a4b647afb21915221c6001467326 210 Pfam PF00072 Response regulator receiver domain 5 117 4.5E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Gene3D G3DSA:3.30.43.10 195 249 7.9E-16 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Pfam PF01799 [2Fe-2S] binding domain 86 158 4.9E-30 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 199 362 1.6E-50 T 29-03-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 76 6.0E-6 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Gene3D G3DSA:3.30.465.10 250 363 6.6E-29 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Gene3D G3DSA:3.30.390.50 364 474 3.9E-30 T 29-03-2018 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 SUPERFAMILY SSF55447 368 473 3.79E-33 T 29-03-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 SUPERFAMILY SSF47741 97 201 1.83E-33 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 370 470 3.7E-31 T 29-03-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 SUPERFAMILY SSF54292 3 90 1.97E-18 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Gene3D G3DSA:1.10.150.120 87 194 7.8E-36 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 SMART SM01092 370 471 6.3E-34 T 29-03-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 PIRSF PIRSF036557 1 484 9.8E-228 T 29-03-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 2 470 2.8E-211 T 29-03-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 SUPERFAMILY SSF56176 184 361 3.03E-53 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS04595 5b79a085c24eea1156e50824cd951387 484 Gene3D G3DSA:3.10.20.30 1 86 1.1E-26 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS02265 a44777479aaadfaa7f27494c464e1672 210 Gene3D G3DSA:2.160.10.10 82 206 8.5E-28 T 29-03-2018 Y880_RS02265 a44777479aaadfaa7f27494c464e1672 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 157 190 1.3E-6 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS02265 a44777479aaadfaa7f27494c464e1672 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 154 1.0E-5 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS02265 a44777479aaadfaa7f27494c464e1672 210 Gene3D G3DSA:3.40.50.20 1 81 3.7E-10 T 29-03-2018 Y880_RS02265 a44777479aaadfaa7f27494c464e1672 210 SUPERFAMILY SSF51161 49 207 1.04E-32 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS18140 c3e16461332868e5c06d72f0e985b33f 182 SMART SM00671 61 96 3.5E-9 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS18140 c3e16461332868e5c06d72f0e985b33f 182 SMART SM00671 97 132 1.0E-6 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS18140 c3e16461332868e5c06d72f0e985b33f 182 Pfam PF08238 Sel1 repeat 61 96 6.2E-9 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS18140 c3e16461332868e5c06d72f0e985b33f 182 Pfam PF08238 Sel1 repeat 97 128 5.8E-4 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS18140 c3e16461332868e5c06d72f0e985b33f 182 SUPERFAMILY SSF81901 34 135 4.84E-22 T 29-03-2018 Y880_RS18140 c3e16461332868e5c06d72f0e985b33f 182 Gene3D G3DSA:2.60.40.1180 35 163 2.7E-28 T 29-03-2018 Y880_RS27230 67e9474a14afa43bd884ef472c570443 302 Gene3D G3DSA:3.40.190.10 91 177 1.6E-12 T 29-03-2018 Y880_RS27230 67e9474a14afa43bd884ef472c570443 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.7E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27230 67e9474a14afa43bd884ef472c570443 302 Gene3D G3DSA:1.10.10.10 3 84 1.1E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27230 67e9474a14afa43bd884ef472c570443 302 SUPERFAMILY SSF53850 90 295 1.01E-38 T 29-03-2018 Y880_RS27230 67e9474a14afa43bd884ef472c570443 302 Gene3D G3DSA:3.40.190.10 178 264 3.3E-19 T 29-03-2018 Y880_RS27230 67e9474a14afa43bd884ef472c570443 302 Pfam PF03466 LysR substrate binding domain 88 293 8.0E-41 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27230 67e9474a14afa43bd884ef472c570443 302 SUPERFAMILY SSF46785 4 111 1.75E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 348 3.9E-126 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 2.9E-35 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 2.9E-35 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 273 288 2.9E-35 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 303 324 2.9E-35 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 2.9E-35 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 354 7.8E-125 T 29-03-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 SUPERFAMILY SSF160544 245 352 8.89E-41 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y880_RS04215 e9eed82a3d7ba86e31884a27c9b320b9 378 Gene3D G3DSA:3.40.1690.10 219 354 1.4E-55 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 Gene3D G3DSA:1.10.10.60 1 39 1.1E-17 T 29-03-2018 Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 SUPERFAMILY SSF46689 5 86 2.19E-22 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 4.0E-18 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 Gene3D G3DSA:1.10.260.40 40 66 2.0E-15 T 29-03-2018 Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 61 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 5.3E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 5.3E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03345 6984028336abb11f0e30a4efcc63d21e 197 Gene3D G3DSA:1.10.357.10 67 194 7.6E-10 T 29-03-2018 Y880_RS07255 24556c689a7ec2f776e49f3791531548 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 294 1.5E-10 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS07255 24556c689a7ec2f776e49f3791531548 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 375 1.1E-71 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS07255 24556c689a7ec2f776e49f3791531548 396 Gene3D G3DSA:2.40.50.100 64 120 8.5E-17 T 29-03-2018 Y880_RS07255 24556c689a7ec2f776e49f3791531548 396 Gene3D G3DSA:2.40.50.100 169 342 4.5E-4 T 29-03-2018 Y880_RS07255 24556c689a7ec2f776e49f3791531548 396 Gene3D G3DSA:1.10.287.470 121 168 1.5E-8 T 29-03-2018 Y880_RS07255 24556c689a7ec2f776e49f3791531548 396 SUPERFAMILY SSF111369 53 300 4.71E-72 T 29-03-2018 Y880_RS07255 24556c689a7ec2f776e49f3791531548 396 Pfam PF00529 HlyD membrane-fusion protein of T1SS 40 360 4.7E-12 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 504 6.2E-134 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 1.5E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 29-03-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 Gene3D G3DSA:1.10.287.70 576 640 5.1E-16 T 29-03-2018 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 SUPERFAMILY SSF81442 43 559 3.53E-177 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 Gene3D G3DSA:1.20.210.10 43 561 1.7E-183 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03490 6c16a653a7f849216b89fbd4a56070a5 658 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS08815 259228d5ff7126de6aa9530113f9fb4a 284 Pfam PF00005 ABC transporter 31 169 2.1E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS08815 259228d5ff7126de6aa9530113f9fb4a 284 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS08815 259228d5ff7126de6aa9530113f9fb4a 284 Gene3D G3DSA:3.40.50.300 7 235 3.0E-65 T 29-03-2018 Y880_RS08815 259228d5ff7126de6aa9530113f9fb4a 284 SUPERFAMILY SSF52540 11 243 5.6E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS08815 259228d5ff7126de6aa9530113f9fb4a 284 SMART SM00382 39 220 2.1E-19 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS13265 fab8da6b653b1737b6e0786dc18446b8 342 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 2 338 4.3E-131 T 29-03-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Y880_RS13265 fab8da6b653b1737b6e0786dc18446b8 342 Pfam PF01180 Dihydroorotate dehydrogenase 44 335 2.5E-86 T 29-03-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Y880_RS13265 fab8da6b653b1737b6e0786dc18446b8 342 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 79 98 - T 29-03-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Y880_RS13265 fab8da6b653b1737b6e0786dc18446b8 342 SUPERFAMILY SSF51395 1 336 3.3E-106 T 29-03-2018 Y880_RS13265 fab8da6b653b1737b6e0786dc18446b8 342 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 1 335 51.402 T 29-03-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Y880_RS13265 fab8da6b653b1737b6e0786dc18446b8 342 PIRSF PIRSF000164 16 342 2.9E-94 T 29-03-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Y880_RS13265 fab8da6b653b1737b6e0786dc18446b8 342 Gene3D G3DSA:3.20.20.70 1 341 1.9E-87 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS07470 53918c5660d67382a15ca41a049e9828 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 157 337 2.0E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS07470 53918c5660d67382a15ca41a049e9828 338 Gene3D G3DSA:1.10.3720.10 11 328 5.0E-41 T 29-03-2018 Y880_RS07470 53918c5660d67382a15ca41a049e9828 338 SUPERFAMILY SSF161098 135 321 1.44E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS02520 333fec5213048684a1eb0720f5a041e1 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.0E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02520 333fec5213048684a1eb0720f5a041e1 303 Gene3D G3DSA:3.40.190.10 94 181 1.9E-13 T 29-03-2018 Y880_RS02520 333fec5213048684a1eb0720f5a041e1 303 Gene3D G3DSA:3.40.190.10 182 270 1.8E-26 T 29-03-2018 Y880_RS02520 333fec5213048684a1eb0720f5a041e1 303 Gene3D G3DSA:1.10.10.10 4 89 5.7E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02520 333fec5213048684a1eb0720f5a041e1 303 SUPERFAMILY SSF53850 95 297 1.41E-42 T 29-03-2018 Y880_RS02520 333fec5213048684a1eb0720f5a041e1 303 SUPERFAMILY SSF46785 7 88 8.16E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02520 333fec5213048684a1eb0720f5a041e1 303 Pfam PF03466 LysR substrate binding domain 94 296 1.9E-43 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 PIRSF PIRSF001369 37 428 3.3E-180 T 29-03-2018 IPR024176 Citrate synthase, bacterial-type Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 Gene3D G3DSA:1.10.580.10 329 402 5.2E-9 T 29-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 421 2.4E-239 T 29-03-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 379 393 7.9E-57 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 165 178 7.9E-57 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 219 234 7.9E-57 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 241 269 7.9E-57 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 296 316 7.9E-57 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 359 375 7.9E-57 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 SUPERFAMILY SSF48256 6 427 6.54E-170 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 29-03-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 Gene3D G3DSA:1.10.580.10 53 302 2.1E-93 T 29-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain Y880_RS04940 4cf94dc018d59bb8e8d515eb802c7822 428 Pfam PF00285 Citrate synthase, C-terminal domain 46 410 4.7E-134 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS10895 00a17714241f3b65f45ea95eeec03276 166 Pfam PF03061 Thioesterase superfamily 23 95 1.8E-17 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS10895 00a17714241f3b65f45ea95eeec03276 166 Gene3D G3DSA:3.10.129.10 1 151 1.1E-47 T 29-03-2018 Y880_RS10895 00a17714241f3b65f45ea95eeec03276 166 SUPERFAMILY SSF54637 5 156 1.51E-44 T 29-03-2018 IPR029069 HotDog domain Y880_RS21835 712826e5e6c06e451b2548d0d8ce9a0e 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 5 92 1.2E-17 T 29-03-2018 IPR007711 Toxin HigB-1 Y880_RS21835 712826e5e6c06e451b2548d0d8ce9a0e 92 Gene3D G3DSA:3.30.2310.20 1 92 3.5E-27 T 29-03-2018 Y880_RS21835 712826e5e6c06e451b2548d0d8ce9a0e 92 SUPERFAMILY SSF143011 1 92 2.35E-15 T 29-03-2018 IPR035095 Toxin RelE-like domain Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 1 200 2.1E-66 T 29-03-2018 IPR006328 L-2-Haloacid dehalogenase GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 157 177 5.9E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 5.9E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 5.9E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 139 155 5.9E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 SUPERFAMILY SSF56784 1 229 7.78E-47 T 29-03-2018 IPR023214 HAD-like domain Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 194 8.3E-12 T 29-03-2018 IPR023214 HAD-like domain Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 Gene3D G3DSA:3.40.50.1000 1 233 5.1E-21 T 29-03-2018 IPR023214 HAD-like domain Y880_RS00670 7837771a40f28801f962bdad2f6acb16 233 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 81 187 1.5E-18 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS16280 7e8c75274b20cf78644806a1b57df0f9 249 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 2.8E-60 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y880_RS16280 7e8c75274b20cf78644806a1b57df0f9 249 Pfam PF01975 Survival protein SurE 3 181 7.9E-55 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y880_RS16280 7e8c75274b20cf78644806a1b57df0f9 249 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 248 38.027 T 29-03-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y880_RS16280 7e8c75274b20cf78644806a1b57df0f9 249 SUPERFAMILY SSF64167 1 246 4.05E-80 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y880_RS16280 7e8c75274b20cf78644806a1b57df0f9 249 Gene3D G3DSA:3.40.1210.10 1 248 6.9E-78 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 3 668 0.0 T 29-03-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:3.40.50.300 1 142 8.0E-25 T 29-03-2018 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:3.40.50.300 143 275 3.5E-30 T 29-03-2018 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:3.40.50.300 276 379 3.6E-25 T 29-03-2018 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 265 3.6E-73 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 SUPERFAMILY SSF52540 2 640 3.25E-165 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:3.40.50.300 387 620 4.4E-37 T 29-03-2018 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 668 40.391 T 29-03-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 Y880_RS25095 af5b5411664ddd82fa5b69b245fd17ca 669 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 1.8E-66 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.3E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 6.3E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.3E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.3E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 6.3E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.3E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 SUPERFAMILY SSF51735 4 245 8.63E-66 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 Gene3D G3DSA:3.40.50.720 43 245 3.7E-51 T 29-03-2018 Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 Gene3D G3DSA:3.40.50.720 1 42 3.0E-5 T 29-03-2018 Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.2E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.2E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 3.2E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24335 15dc52e09b588afee068ebbd8a1ac832 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 244 9.8E-52 T 29-03-2018 Y880_RS05825 31af409f5efc7a6ba4b03dcf6e89ceb8 358 Pfam PF00793 DAHP synthetase I family 42 339 1.8E-93 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y880_RS05825 31af409f5efc7a6ba4b03dcf6e89ceb8 358 Gene3D G3DSA:3.20.20.70 9 357 1.8E-124 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS05825 31af409f5efc7a6ba4b03dcf6e89ceb8 358 SUPERFAMILY SSF51569 8 349 2.56E-133 T 29-03-2018 Y880_RS05825 31af409f5efc7a6ba4b03dcf6e89ceb8 358 PIRSF PIRSF001361 1 355 2.9E-156 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y880_RS05825 31af409f5efc7a6ba4b03dcf6e89ceb8 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 7 349 7.7E-149 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y880_RS03000 016d95e88eb7e2db3694144e990c0df2 297 Gene3D G3DSA:3.40.190.10 187 268 4.3E-14 T 29-03-2018 Y880_RS03000 016d95e88eb7e2db3694144e990c0df2 297 SUPERFAMILY SSF53850 91 294 1.52E-43 T 29-03-2018 Y880_RS03000 016d95e88eb7e2db3694144e990c0df2 297 SUPERFAMILY SSF46785 4 85 9.46E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03000 016d95e88eb7e2db3694144e990c0df2 297 Gene3D G3DSA:1.10.10.10 3 90 1.3E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03000 016d95e88eb7e2db3694144e990c0df2 297 Pfam PF03466 LysR substrate binding domain 95 295 1.4E-34 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS03000 016d95e88eb7e2db3694144e990c0df2 297 Gene3D G3DSA:3.40.190.10 93 186 5.9E-19 T 29-03-2018 Y880_RS03000 016d95e88eb7e2db3694144e990c0df2 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 3.8E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 632 655 5.6E-5 T 29-03-2018 IPR010609 Gp5, C-terminal Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 528 551 2.5E-5 T 29-03-2018 IPR010609 Gp5, C-terminal Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 Gene3D G3DSA:3.55.50.10 98 189 5.5E-33 T 29-03-2018 Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 523 1.8E-207 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 SUPERFAMILY SSF69255 364 451 3.92E-35 T 29-03-2018 Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 505 2.7E-213 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 SUPERFAMILY SSF69279 11 184 7.65E-64 T 29-03-2018 Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 SUPERFAMILY SSF69279 189 362 5.27E-37 T 29-03-2018 Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 SUPERFAMILY SSF69349 579 722 8.63E-24 T 29-03-2018 Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 Pfam PF05954 Phage late control gene D protein (GPD) 29 330 2.0E-105 T 29-03-2018 Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 Gene3D G3DSA:2.40.50.230 369 451 1.7E-39 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS27085 ffa32f152e44bee01f512c4d89c11031 740 SUPERFAMILY SSF69349 441 607 2.43E-48 T 29-03-2018 Y880_RS25900 bad715f9e391bc6365745ba9f254e358 497 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 13 215 1.3E-31 T 29-03-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 Y880_RS25900 bad715f9e391bc6365745ba9f254e358 497 SUPERFAMILY SSF100950 3 222 3.84E-76 T 29-03-2018 Y880_RS25900 bad715f9e391bc6365745ba9f254e358 497 SUPERFAMILY SSF100950 225 494 2.76E-85 T 29-03-2018 Y880_RS25900 bad715f9e391bc6365745ba9f254e358 497 Gene3D G3DSA:3.40.1080.10 13 239 3.9E-36 T 29-03-2018 Y880_RS25900 bad715f9e391bc6365745ba9f254e358 497 Gene3D G3DSA:3.40.1080.10 240 496 4.9E-60 T 29-03-2018 Y880_RS25900 bad715f9e391bc6365745ba9f254e358 497 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 322 463 2.5E-40 T 29-03-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Y880_RS25900 bad715f9e391bc6365745ba9f254e358 497 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 13 494 9.5E-231 T 29-03-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 Y880_RS23950 24d8e5ec156e266ac5b9ee45d3dbf9e2 525 PIRSF PIRSF006281 2 525 2.8E-244 T 29-03-2018 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D Y880_RS23950 24d8e5ec156e266ac5b9ee45d3dbf9e2 525 SUPERFAMILY SSF74650 36 407 3.04E-167 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Y880_RS23950 24d8e5ec156e266ac5b9ee45d3dbf9e2 525 Gene3D G3DSA:2.60.40.10 411 525 7.1E-41 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS23950 24d8e5ec156e266ac5b9ee45d3dbf9e2 525 Gene3D G3DSA:2.70.98.10 36 405 7.9E-170 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Y880_RS23950 24d8e5ec156e266ac5b9ee45d3dbf9e2 525 SUPERFAMILY SSF81296 411 524 1.13E-30 T 29-03-2018 IPR014756 Immunoglobulin E-set Y880_RS23950 24d8e5ec156e266ac5b9ee45d3dbf9e2 525 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 36 521 5.0E-200 T 29-03-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 Y880_RS23950 24d8e5ec156e266ac5b9ee45d3dbf9e2 525 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 18 523 62.216 T 29-03-2018 IPR023704 Glucan biosynthesis protein G Y880_RS25445 8e45ca884d6d797964edce40de3682a4 300 Pfam PF00072 Response regulator receiver domain 7 120 5.0E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS25445 8e45ca884d6d797964edce40de3682a4 300 SUPERFAMILY SSF52172 1 132 6.26E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS25445 8e45ca884d6d797964edce40de3682a4 300 SMART SM00448 4 119 9.1E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS25445 8e45ca884d6d797964edce40de3682a4 300 Gene3D G3DSA:3.40.50.2300 1 294 2.3E-37 T 29-03-2018 Y880_RS00175 57ac730b00db0284b4cba4e7bf752186 221 Gene3D G3DSA:1.10.10.60 168 211 4.7E-4 T 29-03-2018 Y880_RS00175 57ac730b00db0284b4cba4e7bf752186 221 Gene3D G3DSA:1.10.10.60 110 167 4.2E-6 T 29-03-2018 Y880_RS00175 57ac730b00db0284b4cba4e7bf752186 221 Pfam PF12833 Helix-turn-helix domain 138 208 9.2E-12 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00175 57ac730b00db0284b4cba4e7bf752186 221 SMART SM00342 132 214 3.0E-9 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09195 526fd90d497d558627e0c634eb310bff 338 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 317 2.0E-82 T 29-03-2018 IPR010732 Type VI secretion, TssG-like Y880_RS09195 526fd90d497d558627e0c634eb310bff 338 Pfam PF06996 Type VI secretion, TssG 20 317 9.1E-74 T 29-03-2018 IPR010732 Type VI secretion, TssG-like Y880_RS18130 fda5ab422866400c12fff1808aa3e162 209 Gene3D G3DSA:3.20.20.70 2 207 8.8E-42 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS18130 fda5ab422866400c12fff1808aa3e162 209 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 6 197 1.4E-60 T 29-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y880_RS18130 fda5ab422866400c12fff1808aa3e162 209 Pfam PF02581 Thiamine monophosphate synthase 6 186 1.9E-53 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y880_RS18130 fda5ab422866400c12fff1808aa3e162 209 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 4 207 24.907 T 29-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y880_RS18130 fda5ab422866400c12fff1808aa3e162 209 SUPERFAMILY SSF51391 3 200 1.23E-57 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 SUPERFAMILY SSF54373 175 275 3.92E-46 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.5E-32 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.5E-32 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 328 1.5E-32 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 1.5E-32 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.5E-32 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 Gene3D G3DSA:3.50.50.60 3 167 4.1E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 Gene3D G3DSA:3.30.9.10 316 388 9.5E-17 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 Gene3D G3DSA:3.30.9.10 168 284 4.2E-49 T 29-03-2018 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 390 2.7E-221 T 29-03-2018 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 SUPERFAMILY SSF51905 274 389 1.36E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 SUPERFAMILY SSF51905 1 172 1.36E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS27835 3a9abe800e2a416287837ac6e18daab7 394 Pfam PF01494 FAD binding domain 2 343 1.4E-98 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS01630 96bd86c41b7f9036d273a1e8368e7d84 248 Gene3D G3DSA:1.10.10.200 1 78 1.8E-29 T 29-03-2018 IPR017856 Integrase, N-terminal zinc-binding domain-like Y880_RS01630 96bd86c41b7f9036d273a1e8368e7d84 248 Pfam PF01709 Transcriptional regulator 5 237 6.4E-94 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS01630 96bd86c41b7f9036d273a1e8368e7d84 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 36.288 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS01630 96bd86c41b7f9036d273a1e8368e7d84 248 Gene3D G3DSA:3.30.70.980 83 178 2.7E-32 T 29-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS01630 96bd86c41b7f9036d273a1e8368e7d84 248 SUPERFAMILY SSF75625 3 246 3.79E-96 T 29-03-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS01630 96bd86c41b7f9036d273a1e8368e7d84 248 Gene3D G3DSA:3.30.70.980 179 248 2.2E-13 T 29-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS01630 96bd86c41b7f9036d273a1e8368e7d84 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 5.6E-102 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 Pfam PF01546 Peptidase family M20/M25/M40 73 375 6.0E-32 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 SUPERFAMILY SSF53187 297 378 4.0E-52 T 29-03-2018 Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 SUPERFAMILY SSF53187 6 176 4.0E-52 T 29-03-2018 Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 Gene3D G3DSA:3.40.630.10 4 164 1.4E-25 T 29-03-2018 Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 374 1.1E-111 T 29-03-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 Gene3D G3DSA:3.30.70.360 176 293 4.7E-26 T 29-03-2018 Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 Pfam PF07687 Peptidase dimerisation domain 175 285 1.8E-26 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS24630 0a013e4b53f252de0b97827f5ed44f4e 384 SUPERFAMILY SSF55031 177 291 3.74E-22 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS07435 9497c932df920464d399e68ea37cb8ed 220 Gene3D G3DSA:3.40.1050.10 1 212 7.4E-70 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS07435 9497c932df920464d399e68ea37cb8ed 220 SUPERFAMILY SSF53056 2 204 6.41E-67 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS07435 9497c932df920464d399e68ea37cb8ed 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS07435 9497c932df920464d399e68ea37cb8ed 220 SMART SM00947 27 193 2.4E-68 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS07435 9497c932df920464d399e68ea37cb8ed 220 Pfam PF00484 Carbonic anhydrase 34 189 2.1E-51 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS07435 9497c932df920464d399e68ea37cb8ed 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS03005 2f2e56f11f219bb4b1eec1c8c07f74b7 259 SUPERFAMILY SSF52218 1 257 3.59E-71 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS03005 2f2e56f11f219bb4b1eec1c8c07f74b7 259 Gene3D G3DSA:3.40.50.360 1 258 1.3E-66 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS03005 2f2e56f11f219bb4b1eec1c8c07f74b7 259 Pfam PF02525 Flavodoxin-like fold 1 214 2.0E-56 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 TIGRFAM TIGR00761 argB: acetylglutamate kinase 29 272 2.9E-78 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 Hamap MF_00082_B Acetylglutamate kinase [argB]. 26 297 37.299 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 Pfam PF00696 Amino acid kinase family 28 274 7.7E-44 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 PRINTS PR00474 Glutamate 5-kinase family signature 247 267 2.7E-8 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 PRINTS PR00474 Glutamate 5-kinase family signature 59 73 2.7E-8 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 PRINTS PR00474 Glutamate 5-kinase family signature 197 224 2.7E-8 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 PIRSF PIRSF000728 13 297 1.0E-111 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 SUPERFAMILY SSF53633 8 298 1.19E-98 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS25235 0565399fdd6a16dabdfefb209db00a2c 301 Gene3D G3DSA:3.40.1160.10 9 299 2.4E-72 T 29-03-2018 Y880_RS01595 e592c886509a5638cc18f50471e54688 135 SUPERFAMILY SSF54637 2 133 9.61E-27 T 29-03-2018 IPR029069 HotDog domain Y880_RS01595 e592c886509a5638cc18f50471e54688 135 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 132 2.6E-14 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS01595 e592c886509a5638cc18f50471e54688 135 Gene3D G3DSA:3.10.129.10 1 134 2.8E-29 T 29-03-2018 Y880_RS01595 e592c886509a5638cc18f50471e54688 135 Pfam PF03061 Thioesterase superfamily 46 120 7.3E-15 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS03095 6f6fa15fe03627599bd2c968fe0bf0b9 186 SUPERFAMILY SSF48498 79 184 8.9E-14 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS03095 6f6fa15fe03627599bd2c968fe0bf0b9 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 56 1.2E-12 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03095 6f6fa15fe03627599bd2c968fe0bf0b9 186 Gene3D G3DSA:1.10.10.60 5 58 2.9E-16 T 29-03-2018 Y880_RS03095 6f6fa15fe03627599bd2c968fe0bf0b9 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.2E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03095 6f6fa15fe03627599bd2c968fe0bf0b9 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.2E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03095 6f6fa15fe03627599bd2c968fe0bf0b9 186 Gene3D G3DSA:1.10.357.10 59 185 8.2E-18 T 29-03-2018 Y880_RS03095 6f6fa15fe03627599bd2c968fe0bf0b9 186 SUPERFAMILY SSF46689 5 72 2.26E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 130 212 2.2E-22 T 29-03-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 633 729 3.4E-21 T 29-03-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF81296 143 200 5.6E-10 T 29-03-2018 IPR014756 Immunoglobulin E-set Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Gene3D G3DSA:3.20.20.80 250 640 2.9E-77 T 29-03-2018 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 PIRSF PIRSF000463 12 732 6.9E-281 T 29-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Pfam PF00128 Alpha amylase, catalytic domain 280 351 6.6E-9 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 SMART SM00642 256 624 7.6E-7 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF51011 630 730 2.64E-29 T 29-03-2018 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Gene3D G3DSA:2.60.40.10 121 249 7.6E-31 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 106 731 44.598 T 29-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF51445 185 621 2.64E-116 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF81296 21 119 1.54E-15 T 29-03-2018 IPR014756 Immunoglobulin E-set Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 114 729 4.7E-274 T 29-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Gene3D G3DSA:2.60.40.10 6 108 9.1E-10 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS07985 22833174f22d587057c47ed6634c59ad 732 Gene3D G3DSA:2.60.40.1180 641 731 2.7E-30 T 29-03-2018 Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 284 9.3E-35 T 29-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 162 3.1E-44 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 PIRSF PIRSF000103 1 288 2.7E-69 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 SUPERFAMILY SSF48179 164 287 1.05E-39 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 Gene3D G3DSA:3.40.50.720 1 164 5.8E-32 T 29-03-2018 Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 SUPERFAMILY SSF51735 3 165 1.0E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 Gene3D G3DSA:1.10.1040.10 165 288 1.1E-33 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS04915 536d6249952b05b56f8237b5e9155dd2 288 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 29-03-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 Pfam PF13537 Glutamine amidotransferase domain 48 170 3.2E-43 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 537 2.4E-176 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 Gene3D G3DSA:3.60.20.10 1 223 2.3E-52 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 PIRSF PIRSF001589 1 610 1.9E-140 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 Gene3D G3DSA:3.40.50.620 224 609 2.9E-58 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 SUPERFAMILY SSF56235 1 226 9.44E-62 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 SUPERFAMILY SSF52402 457 578 7.33E-60 T 29-03-2018 Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 SUPERFAMILY SSF52402 231 399 7.33E-60 T 29-03-2018 Y880_RS26870 bbc54a2302747bc682b1e3cffd4a733f 610 Pfam PF00733 Asparagine synthase 242 604 4.3E-82 T 29-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y880_RS13185 d55113ef8590ba90610e7c062a64b541 198 Gene3D G3DSA:3.40.30.10 1 92 1.8E-26 T 29-03-2018 Y880_RS13185 d55113ef8590ba90610e7c062a64b541 198 SUPERFAMILY SSF47616 71 194 6.55E-22 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS13185 d55113ef8590ba90610e7c062a64b541 198 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 190 3.4E-7 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS13185 d55113ef8590ba90610e7c062a64b541 198 Pfam PF02798 Glutathione S-transferase, N-terminal domain 8 74 6.3E-12 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS13185 d55113ef8590ba90610e7c062a64b541 198 Gene3D G3DSA:1.20.1050.10 93 195 5.5E-20 T 29-03-2018 Y880_RS13185 d55113ef8590ba90610e7c062a64b541 198 SUPERFAMILY SSF52833 1 83 2.2E-22 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS20365 cc9a4ef7e24080549f7553173ddecc6c 399 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 337 361 - T 29-03-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 Y880_RS20365 cc9a4ef7e24080549f7553173ddecc6c 399 Pfam PF01098 Cell cycle protein 25 380 2.8E-103 T 29-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 Y880_RS20365 cc9a4ef7e24080549f7553173ddecc6c 399 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 23 378 4.4E-129 T 29-03-2018 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 Y880_RS20365 cc9a4ef7e24080549f7553173ddecc6c 399 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 19 388 40.121 T 29-03-2018 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 Y880_RS10565 d26cf40207b41b2799142286ce505866 389 Gene3D G3DSA:2.60.120.650 7 216 4.5E-32 T 29-03-2018 Y880_RS10565 d26cf40207b41b2799142286ce505866 389 SMART SM00558 101 225 5.9E-5 T 29-03-2018 IPR003347 JmjC domain Y880_RS10565 d26cf40207b41b2799142286ce505866 389 Pfam PF08007 Cupin superfamily protein 16 319 1.9E-106 T 29-03-2018 IPR003347 JmjC domain Y880_RS10565 d26cf40207b41b2799142286ce505866 389 SUPERFAMILY SSF51197 6 300 6.87E-79 T 29-03-2018 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 290 1.8E-18 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS12145 0ab300626c6896450c39229260b501d3 354 Gene3D G3DSA:1.20.1600.10 180 354 2.9E-18 T 29-03-2018 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 330 345 1.1E-5 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 58 78 1.1E-5 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 Gene3D G3DSA:2.40.50.100 48 116 1.4E-18 T 29-03-2018 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 SUPERFAMILY SSF111369 50 128 4.97E-11 T 29-03-2018 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 SUPERFAMILY SSF111369 183 305 4.71E-13 T 29-03-2018 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 Pfam PF00529 HlyD membrane-fusion protein of T1SS 89 342 1.0E-7 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS12145 0ab300626c6896450c39229260b501d3 354 Gene3D G3DSA:1.10.287.470 117 179 1.1E-7 T 29-03-2018 Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 SUPERFAMILY SSF52540 7 231 2.02E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 Gene3D G3DSA:3.40.50.300 353 524 2.6E-33 T 29-03-2018 Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 Gene3D G3DSA:3.40.50.300 1 276 1.9E-40 T 29-03-2018 Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 SUPERFAMILY SSF52540 356 520 9.16E-33 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 Pfam PF00005 ABC transporter 357 486 2.8E-16 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 Pfam PF00005 ABC transporter 33 172 3.1E-16 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 SMART SM00382 31 216 2.6E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS04100 fd4313c00ad58cb225a919371fb5f88f 538 SMART SM00382 365 532 2.5E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26285 10852a19e0eef21520b14d1be3a91f85 160 Gene3D G3DSA:3.10.129.10 2 156 2.0E-49 T 29-03-2018 Y880_RS26285 10852a19e0eef21520b14d1be3a91f85 160 SUPERFAMILY SSF54637 4 154 6.56E-46 T 29-03-2018 IPR029069 HotDog domain Y880_RS26285 10852a19e0eef21520b14d1be3a91f85 160 Pfam PF03061 Thioesterase superfamily 23 96 2.5E-18 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 PRINTS PR01166 Cytochrome c oxidase subunit II signature 224 241 1.4E-39 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 PRINTS PR01166 Cytochrome c oxidase subunit II signature 206 223 1.4E-39 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 PRINTS PR01166 Cytochrome c oxidase subunit II signature 186 206 1.4E-39 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 PRINTS PR01166 Cytochrome c oxidase subunit II signature 115 134 1.4E-39 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 PRINTS PR01166 Cytochrome c oxidase subunit II signature 81 93 1.4E-39 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 PRINTS PR01166 Cytochrome c oxidase subunit II signature 162 183 1.4E-39 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 PRINTS PR01166 Cytochrome c oxidase subunit II signature 93 113 1.4E-39 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 Gene3D G3DSA:2.60.40.420 116 246 9.2E-50 T 29-03-2018 IPR008972 Cupredoxin Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 23 104 7.3E-13 T 29-03-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 121 240 7.4E-37 T 29-03-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 32 251 4.1E-59 T 29-03-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 SUPERFAMILY SSF81464 12 112 4.74E-25 T 29-03-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 Gene3D G3DSA:1.10.760.10 247 356 3.0E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 SUPERFAMILY SSF49503 116 257 9.84E-54 T 29-03-2018 IPR008972 Cupredoxin Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 Gene3D G3DSA:1.10.287.90 21 114 4.7E-25 T 29-03-2018 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 SUPERFAMILY SSF46626 221 358 9.88E-24 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 187 235 - T 29-03-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27140 2441943c1549527b83a47e0e91c218ad 374 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 274 348 1.2E-10 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Pfam PF00684 DnaJ central domain 149 209 4.1E-14 T 29-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Gene3D G3DSA:2.60.260.20 257 366 1.7E-30 T 29-03-2018 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SMART SM00271 4 62 5.7E-33 T 29-03-2018 IPR001623 DnaJ domain Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF49493 215 269 6.8E-21 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF49493 116 154 6.8E-21 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 3.1E-140 T 29-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF57938 136 213 3.79E-22 T 29-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Gene3D G3DSA:1.10.287.110 1 115 1.3E-36 T 29-03-2018 IPR001623 DnaJ domain Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 29-03-2018 IPR018253 DnaJ domain, conserved site Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Gene3D G3DSA:2.10.230.10 149 195 1.2E-13 T 29-03-2018 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 25 40 1.7E-33 T 29-03-2018 IPR001623 DnaJ domain Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 42 62 1.7E-33 T 29-03-2018 IPR001623 DnaJ domain Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 62 81 1.7E-33 T 29-03-2018 IPR001623 DnaJ domain Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 7 25 1.7E-33 T 29-03-2018 IPR001623 DnaJ domain Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Gene3D G3DSA:2.60.260.20 196 256 1.4E-18 T 29-03-2018 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF49493 261 346 3.01E-22 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 42.81 T 29-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Pfam PF00226 DnaJ domain 5 67 4.3E-28 T 29-03-2018 IPR001623 DnaJ domain Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Pfam PF01556 DnaJ C terminal domain 123 335 2.6E-44 T 29-03-2018 IPR002939 Chaperone DnaJ, C-terminal Y880_RS22295 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF46565 1 111 2.88E-36 T 29-03-2018 IPR001623 DnaJ domain Y880_RS25940 85d010fb479e34b496b58f4759483e47 323 Gene3D G3DSA:3.40.50.720 2 199 1.0E-23 T 29-03-2018 Y880_RS25940 85d010fb479e34b496b58f4759483e47 323 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 312 2.5E-122 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25940 85d010fb479e34b496b58f4759483e47 323 Gene3D G3DSA:3.90.25.10 245 323 4.3E-24 T 29-03-2018 Y880_RS25940 85d010fb479e34b496b58f4759483e47 323 Gene3D G3DSA:3.90.25.10 200 244 4.0E-24 T 29-03-2018 Y880_RS25940 85d010fb479e34b496b58f4759483e47 323 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 322 53.111 T 29-03-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 Y880_RS25940 85d010fb479e34b496b58f4759483e47 323 SUPERFAMILY SSF51735 3 319 9.68E-75 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25940 85d010fb479e34b496b58f4759483e47 323 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 4 319 2.3E-127 T 29-03-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 Y880_RS14340 1b8031ae513c489a51d3097da478e23c 143 Pfam PF06803 Protein of unknown function (DUF1232) 67 102 1.7E-13 T 29-03-2018 IPR010652 Protein of unknown function DUF1232 Y880_RS08935 b3c028a03cc690c780fb7c33f9388d01 121 Gene3D G3DSA:2.60.120.10 26 121 1.7E-8 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS08935 b3c028a03cc690c780fb7c33f9388d01 121 SUPERFAMILY SSF51182 29 117 2.89E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS08935 b3c028a03cc690c780fb7c33f9388d01 121 Pfam PF05899 Protein of unknown function (DUF861) 44 117 2.7E-17 T 29-03-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 SUPERFAMILY SSF75217 70 245 5.62E-49 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 245 43.021 T 29-03-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 244 6.2E-82 T 29-03-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 SUPERFAMILY SSF55315 2 77 2.0E-18 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 Gene3D G3DSA:3.30.1330.30 2 77 1.1E-18 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 Gene3D G3DSA:3.40.1280.10 82 246 3.1E-48 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 80 5.8E-19 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 Pfam PF00588 SpoU rRNA Methylase family 98 238 3.3E-40 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Y880_RS23195 8826800bd7b864b6dfc467eaa3b8d31f 248 SMART SM00967 6 81 6.3E-20 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 Gene3D G3DSA:3.30.465.10 53 123 1.6E-15 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 Gene3D G3DSA:3.30.465.10 138 218 7.9E-17 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 Gene3D G3DSA:3.30.390.50 219 325 4.4E-25 T 29-03-2018 Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 225 322 1.3E-14 T 29-03-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 SUPERFAMILY SSF55447 223 322 1.96E-27 T 29-03-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 SUPERFAMILY SSF56176 1 217 8.72E-59 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 SMART SM01092 224 322 8.2E-28 T 29-03-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 Gene3D G3DSA:3.30.43.10 1 49 5.0E-19 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS06825 b1d48bc644e33ccfabcb4fdacd372fe3 329 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 217 4.9E-50 T 29-03-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Y880_RS27725 e88cdd44fb4dfda79e895d44ba912efc 179 Gene3D G3DSA:1.10.260.40 1 54 5.1E-18 T 29-03-2018 Y880_RS27725 e88cdd44fb4dfda79e895d44ba912efc 179 SUPERFAMILY SSF51182 67 175 5.63E-24 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS27725 e88cdd44fb4dfda79e895d44ba912efc 179 Gene3D G3DSA:2.60.120.10 55 179 4.2E-14 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS27725 e88cdd44fb4dfda79e895d44ba912efc 179 SUPERFAMILY SSF47413 3 66 5.09E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS27725 e88cdd44fb4dfda79e895d44ba912efc 179 SMART SM00530 4 59 3.9E-17 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS27725 e88cdd44fb4dfda79e895d44ba912efc 179 Pfam PF07883 Cupin domain 118 174 1.3E-13 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS27725 e88cdd44fb4dfda79e895d44ba912efc 179 Pfam PF01381 Helix-turn-helix 5 59 2.1E-16 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS22365 64d0785a7c80488b736c0952be6a73d2 160 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 11 127 31.184 T 29-03-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y880_RS22365 64d0785a7c80488b736c0952be6a73d2 160 Pfam PF02675 S-adenosylmethionine decarboxylase 18 123 2.9E-34 T 29-03-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y880_RS22365 64d0785a7c80488b736c0952be6a73d2 160 SUPERFAMILY SSF56276 13 124 3.26E-38 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Y880_RS22365 64d0785a7c80488b736c0952be6a73d2 160 Gene3D G3DSA:3.60.90.10 7 128 7.1E-38 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Y880_RS22365 64d0785a7c80488b736c0952be6a73d2 160 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 13 123 4.0E-45 T 29-03-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y880_RS09795 8fae81370d95992030d8dd7046fbdcde 339 Pfam PF13602 Zinc-binding dehydrogenase 189 335 2.7E-17 T 29-03-2018 Y880_RS09795 8fae81370d95992030d8dd7046fbdcde 339 SMART SM00829 11 335 3.7E-13 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS09795 8fae81370d95992030d8dd7046fbdcde 339 Gene3D G3DSA:3.90.180.10 1 140 1.1E-28 T 29-03-2018 Y880_RS09795 8fae81370d95992030d8dd7046fbdcde 339 Gene3D G3DSA:3.40.50.720 141 321 1.8E-26 T 29-03-2018 Y880_RS09795 8fae81370d95992030d8dd7046fbdcde 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 90 9.5E-8 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS09795 8fae81370d95992030d8dd7046fbdcde 339 SUPERFAMILY SSF51735 119 274 2.32E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS09795 8fae81370d95992030d8dd7046fbdcde 339 SUPERFAMILY SSF50129 3 151 1.08E-27 T 29-03-2018 IPR011032 GroES-like Y880_RS28840 b033de24eec368a7517bd0fa21996efb 730 Gene3D G3DSA:2.170.130.10 26 174 1.0E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS28840 b033de24eec368a7517bd0fa21996efb 730 SUPERFAMILY SSF56935 30 730 2.59E-121 T 29-03-2018 Y880_RS28840 b033de24eec368a7517bd0fa21996efb 730 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 70 730 9.3E-71 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS28840 b033de24eec368a7517bd0fa21996efb 730 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 713 730 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS28840 b033de24eec368a7517bd0fa21996efb 730 Gene3D G3DSA:2.40.170.20 183 730 2.4E-74 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS28840 b033de24eec368a7517bd0fa21996efb 730 Pfam PF00593 TonB dependent receptor 265 728 1.2E-53 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS28840 b033de24eec368a7517bd0fa21996efb 730 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 167 5.0E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS29315 e6b60377603a1ddd60777dc266b2e9f7 612 SMART SM00327 421 604 6.7E-21 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS29315 e6b60377603a1ddd60777dc266b2e9f7 612 SUPERFAMILY SSF53300 424 608 8.71E-19 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS29315 e6b60377603a1ddd60777dc266b2e9f7 612 Gene3D G3DSA:3.40.50.410 395 609 4.2E-15 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS29315 e6b60377603a1ddd60777dc266b2e9f7 612 Pfam PF00092 von Willebrand factor type A domain 427 575 2.8E-5 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 1.7E-26 T 29-03-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 2.0E-37 T 29-03-2018 Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 SUPERFAMILY SSF55021 1 75 2.45E-21 T 29-03-2018 Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 Gene3D G3DSA:3.30.70.260 1 87 2.1E-22 T 29-03-2018 Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 SUPERFAMILY SSF55021 79 162 2.29E-26 T 29-03-2018 Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.6E-63 T 29-03-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 Gene3D G3DSA:3.30.70.1150 88 160 5.5E-27 T 29-03-2018 Y880_RS21950 ebd7ae86d63b19a944fad84811c3a8e3 163 Pfam PF13710 ACT domain 12 72 3.4E-15 T 29-03-2018 Y880_RS28740 d780aac21bf1f65e47af176a658afada 168 Pfam PF01584 CheW-like domain 26 158 3.6E-10 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28740 d780aac21bf1f65e47af176a658afada 168 SUPERFAMILY SSF50341 20 158 3.4E-9 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28740 d780aac21bf1f65e47af176a658afada 168 Gene3D G3DSA:2.40.50.180 42 125 1.8E-4 T 29-03-2018 Y880_RS28740 d780aac21bf1f65e47af176a658afada 168 SMART SM00260 21 159 1.6E-15 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28210 0ed828df8e2dd68b41ea2741a1847bfd 145 Pfam PF14347 Domain of unknown function (DUF4399) 54 145 1.0E-39 T 29-03-2018 IPR025512 Domain of unknown function DUF4399 Y880_RS13815 582a77b41052061335656296b4908213 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 6.8E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS13815 582a77b41052061335656296b4908213 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 6.8E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS13815 582a77b41052061335656296b4908213 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 6.8E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS13815 582a77b41052061335656296b4908213 94 SMART SM00411 1 91 7.5E-45 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS13815 582a77b41052061335656296b4908213 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y880_RS13815 582a77b41052061335656296b4908213 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 94 2.1E-54 T 29-03-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 Y880_RS13815 582a77b41052061335656296b4908213 94 Gene3D G3DSA:4.10.520.10 1 94 5.5E-32 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS13815 582a77b41052061335656296b4908213 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.813 T 29-03-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 Y880_RS13815 582a77b41052061335656296b4908213 94 SUPERFAMILY SSF47729 1 92 3.68E-31 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS13815 582a77b41052061335656296b4908213 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 2.4E-29 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS06435 38927fba55ba3e700c249a0ab5f0f64e 275 SUPERFAMILY SSF56112 25 254 1.08E-29 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS06435 38927fba55ba3e700c249a0ab5f0f64e 275 Gene3D G3DSA:3.90.1200.10 81 246 1.3E-9 T 29-03-2018 Y880_RS06435 38927fba55ba3e700c249a0ab5f0f64e 275 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 13 250 2.9E-102 T 29-03-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 Pfam PF00270 DEAD/DEAH box helicase 159 334 2.9E-48 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 SMART SM00490 397 478 2.0E-32 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 Pfam PF00271 Helicase conserved C-terminal domain 369 478 9.8E-30 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 134 516 53.172 T 29-03-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 Gene3D G3DSA:3.40.50.300 79 363 1.3E-54 T 29-03-2018 Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 290 298 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 SUPERFAMILY SSF52540 210 494 1.97E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 Gene3D G3DSA:3.40.50.300 364 515 2.4E-43 T 29-03-2018 Y880_RS17525 3ab2f37a7cc061a163e089657d97f297 523 SMART SM00487 154 361 4.8E-52 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 Pfam PF08402 TOBE domain 257 327 2.1E-8 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 SUPERFAMILY SSF52540 4 241 4.37E-87 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 Gene3D G3DSA:2.40.50.140 260 323 5.7E-4 T 29-03-2018 Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 SMART SM00382 28 211 1.7E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 SUPERFAMILY SSF50331 252 327 9.35E-9 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 Pfam PF00005 ABC transporter 20 161 1.2E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS14295 3a65ada91a6aed25cc387ef1083d7403 331 Gene3D G3DSA:3.40.50.300 1 257 2.5E-77 T 29-03-2018 Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 Gene3D G3DSA:3.40.50.880 285 542 1.6E-72 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 Pfam PF00117 Glutamine amidotransferase class-I 300 533 9.3E-59 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 Pfam PF06418 CTP synthase N-terminus 3 265 9.8E-125 T 29-03-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 Gene3D G3DSA:3.40.50.300 1 283 6.4E-128 T 29-03-2018 Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 Hamap MF_01227 CTP synthase [pyrG]. 2 539 51.562 T 29-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 SUPERFAMILY SSF52317 287 538 2.22E-88 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 SUPERFAMILY SSF52540 1 267 1.52E-121 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16340 9c609c5ee078836afc904ffc096c6562 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 5.5E-253 T 29-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 123 136 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 123 136 5.9E-28 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 307 318 5.9E-28 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 292 307 5.9E-28 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 147 155 5.9E-28 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 271 283 5.9E-28 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 54 333 2.2E-140 T 29-03-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Gene3D G3DSA:1.10.10.10 261 330 1.8E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF04542 Sigma-70 region 2 99 168 7.5E-22 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 292 318 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Gene3D G3DSA:1.10.10.10 169 219 3.1E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 4 333 40.747 T 29-03-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF00140 Sigma-70 factor, region 1.2 61 93 3.2E-13 T 29-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Gene3D G3DSA:1.10.601.10 3 168 7.6E-60 T 29-03-2018 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 SUPERFAMILY SSF88946 61 169 2.88E-45 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 SUPERFAMILY SSF88659 230 327 2.62E-25 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF04545 Sigma-70, region 4 267 320 1.3E-15 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF04539 Sigma-70 region 3 179 253 2.7E-20 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 SUPERFAMILY SSF88659 172 246 5.67E-14 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16265 9f0010d7c668db6bec136c6e164678f2 334 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 96 322 3.0E-37 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS27005 9bbb4fd9bbaab83a33d309b939f134a0 444 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 443 1.5E-157 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 Y880_RS27005 9bbb4fd9bbaab83a33d309b939f134a0 444 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 442 3.1E-160 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 Y880_RS00205 8dd4c1a5e2afce9a9c00c8a66095afda 259 Pfam PF00563 EAL domain 22 248 1.3E-11 T 29-03-2018 IPR001633 EAL domain Y880_RS00205 8dd4c1a5e2afce9a9c00c8a66095afda 259 SUPERFAMILY SSF141868 21 252 1.96E-6 T 29-03-2018 IPR001633 EAL domain Y880_RS00205 8dd4c1a5e2afce9a9c00c8a66095afda 259 Gene3D G3DSA:3.20.20.450 19 256 1.4E-9 T 29-03-2018 IPR001633 EAL domain Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 SMART SM01008 216 294 3.3E-23 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Gene3D G3DSA:3.30.365.10 593 727 2.4E-33 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 SUPERFAMILY SSF56003 318 724 2.22E-117 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Gene3D G3DSA:3.30.365.10 331 430 4.8E-28 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 320 560 2.9E-30 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 25 194 1.2E-17 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 599 679 1.0E-15 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Gene3D G3DSA:3.30.365.10 25 192 6.2E-46 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 SUPERFAMILY SSF56003 14 249 2.62E-50 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Gene3D G3DSA:3.30.365.10 431 592 2.6E-41 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 Gene3D G3DSA:3.90.1170.50 193 330 1.5E-36 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS06550 9dfd8226bd97cf2b4844012406986a14 731 PIRSF PIRSF036389 6 731 8.9E-268 T 29-03-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 SUPERFAMILY SSF48452 38 203 1.37E-24 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 Gene3D G3DSA:1.25.40.10 114 160 7.0E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 SMART SM00028 141 174 5.2E-4 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 SMART SM00028 37 70 0.003 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 SMART SM00028 71 104 42.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 Gene3D G3DSA:1.25.40.10 32 92 4.3E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 Gene3D G3DSA:1.25.40.10 93 113 8.0E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 Gene3D G3DSA:1.25.40.10 161 246 5.5E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 10 240 4.7E-74 T 29-03-2018 IPR013360 Pilus biogenesis/stability type IV, PilW Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 Pfam PF13424 Tetratricopeptide repeat 105 172 1.5E-8 T 29-03-2018 Y880_RS17230 69dc5b9e5d5d9255d51f639eecef8626 252 Pfam PF13414 TPR repeat 47 82 8.4E-7 T 29-03-2018 Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 Pfam PF01551 Peptidase family M23 286 366 4.0E-11 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 Gene3D G3DSA:2.70.70.10 237 418 3.5E-23 T 29-03-2018 Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 SUPERFAMILY SSF51261 226 365 3.19E-17 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 372 395 2.2E-57 T 29-03-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 244 265 2.2E-57 T 29-03-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 266 284 2.2E-57 T 29-03-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 293 311 2.2E-57 T 29-03-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y880_RS06505 8c376a84e9d4369ea4490f811cf6f24a 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 345 365 2.2E-57 T 29-03-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y880_RS29730 4c16dca0eb8049a6071fbf4ac8108c9e 348 SUPERFAMILY SSF53850 29 345 1.18E-67 T 29-03-2018 Y880_RS29730 4c16dca0eb8049a6071fbf4ac8108c9e 348 Gene3D G3DSA:3.40.190.10 27 143 5.6E-13 T 29-03-2018 Y880_RS29730 4c16dca0eb8049a6071fbf4ac8108c9e 348 Pfam PF13416 Bacterial extracellular solute-binding protein 49 303 6.3E-46 T 29-03-2018 Y880_RS29730 4c16dca0eb8049a6071fbf4ac8108c9e 348 Gene3D G3DSA:3.40.190.10 144 301 3.4E-31 T 29-03-2018 Y880_RS13135 8356877c3b2d76184430c3c3774e77b4 531 Gene3D G3DSA:3.30.465.10 144 287 1.6E-22 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS13135 8356877c3b2d76184430c3c3774e77b4 531 Gene3D G3DSA:3.30.43.10 6 143 3.3E-18 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS13135 8356877c3b2d76184430c3c3774e77b4 531 SUPERFAMILY SSF56176 56 264 2.85E-42 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS13135 8356877c3b2d76184430c3c3774e77b4 531 Pfam PF01565 FAD binding domain 88 215 4.8E-29 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y880_RS13135 8356877c3b2d76184430c3c3774e77b4 531 Gene3D G3DSA:1.10.45.10 489 528 1.2E-8 T 29-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y880_RS13135 8356877c3b2d76184430c3c3774e77b4 531 Pfam PF02913 FAD linked oxidases, C-terminal domain 266 526 1.6E-46 T 29-03-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y880_RS13135 8356877c3b2d76184430c3c3774e77b4 531 SUPERFAMILY SSF55103 269 530 4.58E-37 T 29-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82693 38 130 3.14E-24 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 Gene3D G3DSA:1.20.1640.10 822 1026 1.4E-36 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 Gene3D G3DSA:3.30.70.1430 38 139 4.8E-25 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82866 295 497 8.76E-50 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82693 564 667 6.02E-25 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 469 492 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 362 383 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 444 467 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 PRINTS PR00702 Acriflavin resistance protein family signature 335 358 1.2E-105 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82866 803 1025 1.05E-44 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82714 719 805 5.62E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 Gene3D G3DSA:3.30.2090.10 179 274 1.1E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1032 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 Gene3D G3DSA:1.20.1640.10 285 509 2.8E-46 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82693 273 329 1.36E-25 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82693 135 181 1.36E-25 T 29-03-2018 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1022 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 Gene3D G3DSA:3.30.2090.10 718 806 1.4E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 SUPERFAMILY SSF82714 181 270 4.58E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS07250 87a95e39af6e268a4f065e21da2ad944 1045 Gene3D G3DSA:3.30.70.1430 566 665 4.2E-18 T 29-03-2018 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 19.495 T 29-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 132 1.3E-7 T 29-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 86 9.0E-38 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 SUPERFAMILY SSF46604 89 137 2.48E-11 T 29-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 Gene3D G3DSA:1.20.5.440 91 131 4.7E-6 T 29-03-2018 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 SUPERFAMILY SSF51344 4 86 9.55E-24 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 4.3E-30 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 Gene3D G3DSA:2.60.15.10 2 90 1.7E-27 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26490 c708b21f2427fc71bcde751da15b347d 141 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 3.9E-45 T 29-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 Gene3D G3DSA:3.40.50.300 1 238 4.1E-72 T 29-03-2018 Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 Pfam PF08402 TOBE domain 281 355 4.6E-11 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 SMART SM00382 28 211 1.2E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 Gene3D G3DSA:2.40.50.100 239 291 3.4E-8 T 29-03-2018 Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 Gene3D G3DSA:2.40.50.140 292 348 1.9E-13 T 29-03-2018 Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 Pfam PF00005 ABC transporter 20 161 3.9E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 SUPERFAMILY SSF50331 236 362 1.34E-27 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS09050 f209834afdb5be0a4e703896101cef94 370 SUPERFAMILY SSF52540 4 240 4.62E-84 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 Pfam PF00175 Oxidoreductase NAD-binding domain 112 228 7.4E-8 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 SUPERFAMILY SSF63380 3 99 2.33E-27 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 SUPERFAMILY SSF52343 102 256 1.44E-42 T 29-03-2018 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 Gene3D G3DSA:2.40.30.10 2 96 1.1E-18 T 29-03-2018 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 1.4E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 1.4E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 1.4E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 1.4E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 Gene3D G3DSA:3.40.50.80 97 258 3.2E-21 T 29-03-2018 Y880_RS15090 57e65bbd2cd27181b4c81fc4bfd275af 258 Pfam PF00970 Oxidoreductase FAD-binding domain 16 98 4.7E-9 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Y880_RS23725 216e13bb6dbfdabb8ab6983cb40ad2a8 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 143 159 - T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y880_RS23725 216e13bb6dbfdabb8ab6983cb40ad2a8 355 Gene3D G3DSA:3.20.20.210 1 355 1.8E-113 T 29-03-2018 Y880_RS23725 216e13bb6dbfdabb8ab6983cb40ad2a8 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y880_RS23725 216e13bb6dbfdabb8ab6983cb40ad2a8 355 SUPERFAMILY SSF51726 1 354 2.88E-123 T 29-03-2018 Y880_RS23725 216e13bb6dbfdabb8ab6983cb40ad2a8 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 348 1.0E-134 T 29-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y880_RS23725 216e13bb6dbfdabb8ab6983cb40ad2a8 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 350 50.006 T 29-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y880_RS23725 216e13bb6dbfdabb8ab6983cb40ad2a8 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 348 6.2E-142 T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y880_RS28570 e0bbd7434033d17551dcd0fd6beb440c 448 Gene3D G3DSA:2.50.20.10 156 445 1.8E-51 T 29-03-2018 Y880_RS28570 e0bbd7434033d17551dcd0fd6beb440c 448 Pfam PF07044 Protein of unknown function (DUF1329) 82 444 1.4E-138 T 29-03-2018 IPR010752 Protein of unknown function DUF1329 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 SMART SM00382 375 520 3.1E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Hamap MF_01973 Lon protease [lon]. 32 798 59.922 T 29-03-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Gene3D G3DSA:2.30.130.40 23 142 1.7E-15 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Gene3D G3DSA:3.30.230.10 614 798 2.7E-57 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 379 517 1.6E-22 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 SUPERFAMILY SSF54211 620 797 9.48E-47 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 TIGRFAM TIGR00763 lon: endopeptidase La 34 797 2.0E-277 T 29-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 729 748 1.6E-47 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 620 636 1.6E-47 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 383 402 1.6E-47 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 752 770 1.6E-47 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 699 718 1.6E-47 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 32 227 3.6E-25 T 29-03-2018 IPR003111 Lon, substrate-binding domain Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Gene3D G3DSA:1.10.8.60 519 611 1.0E-29 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 702 710 - T 29-03-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Gene3D G3DSA:3.40.50.300 340 518 1.9E-31 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Gene3D G3DSA:1.10.4060.10 145 237 1.4E-11 T 29-03-2018 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 PIRSF PIRSF001174 21 799 3.1E-273 T 29-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 SUPERFAMILY SSF52540 337 614 1.01E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 SUPERFAMILY SSF88697 32 227 6.46E-19 T 29-03-2018 IPR015947 PUA-like domain Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 SMART SM00464 31 228 8.5E-23 T 29-03-2018 IPR003111 Lon, substrate-binding domain Y880_RS00510 5beab33353d69943cfbd27caa639330c 799 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 597 797 3.7E-79 T 29-03-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Y880_RS29485 5abcdcc5d17bcfc0f34be0eb4bd13612 218 SUPERFAMILY SSF54427 76 205 2.2E-31 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS29485 5abcdcc5d17bcfc0f34be0eb4bd13612 218 Pfam PF13474 SnoaL-like domain 85 206 2.4E-18 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS29485 5abcdcc5d17bcfc0f34be0eb4bd13612 218 Gene3D G3DSA:3.10.450.50 72 218 3.7E-25 T 29-03-2018 Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Gene3D G3DSA:3.40.50.2300 1 129 2.3E-33 T 29-03-2018 Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Pfam PF00072 Response regulator receiver domain 8 117 4.1E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SMART SM00862 156 232 3.4E-26 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SMART SM00448 6 116 4.6E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Gene3D G3DSA:1.10.10.10 130 235 5.3E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 1.6E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SUPERFAMILY SSF52172 5 125 6.4E-38 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS02665 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SUPERFAMILY SSF46894 133 233 1.16E-28 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS04865 9a97a49ae86d7df3a2b742440d938ea0 465 TIGRFAM TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase 5 464 9.6E-251 T 29-03-2018 IPR017715 Putative aminophosphonate oxidoreductase Y880_RS04865 9a97a49ae86d7df3a2b742440d938ea0 465 Gene3D G3DSA:3.50.50.60 17 438 2.9E-34 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04865 9a97a49ae86d7df3a2b742440d938ea0 465 Pfam PF01266 FAD dependent oxidoreductase 30 393 7.2E-50 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS04865 9a97a49ae86d7df3a2b742440d938ea0 465 SUPERFAMILY SSF51905 355 415 5.4E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04865 9a97a49ae86d7df3a2b742440d938ea0 465 SUPERFAMILY SSF51905 29 254 5.4E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13855 f2717f018730c63156a81e6cb10c2e3c 358 Pfam PF01008 Initiation factor 2 subunit family 53 341 3.4E-74 T 29-03-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 Y880_RS13855 f2717f018730c63156a81e6cb10c2e3c 358 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 41 341 1.4E-106 T 29-03-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Y880_RS13855 f2717f018730c63156a81e6cb10c2e3c 358 Gene3D G3DSA:3.40.50.10470 149 357 1.8E-66 T 29-03-2018 Y880_RS13855 f2717f018730c63156a81e6cb10c2e3c 358 Gene3D G3DSA:1.20.120.420 11 148 3.8E-46 T 29-03-2018 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 Y880_RS13855 f2717f018730c63156a81e6cb10c2e3c 358 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 10 352 40.114 T 29-03-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Y880_RS13855 f2717f018730c63156a81e6cb10c2e3c 358 SUPERFAMILY SSF100950 9 347 1.17E-114 T 29-03-2018 Y880_RS13855 f2717f018730c63156a81e6cb10c2e3c 358 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 12 341 2.7E-141 T 29-03-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Y880_RS04440 a8f3a1c2daabeec968d9599383441cca 332 Pfam PF13531 Bacterial extracellular solute-binding protein 31 280 7.7E-41 T 29-03-2018 Y880_RS04440 a8f3a1c2daabeec968d9599383441cca 332 SUPERFAMILY SSF53850 22 329 3.76E-83 T 29-03-2018 Y880_RS04440 a8f3a1c2daabeec968d9599383441cca 332 Gene3D G3DSA:3.40.190.10 131 331 2.3E-44 T 29-03-2018 Y880_RS04440 a8f3a1c2daabeec968d9599383441cca 332 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 23 328 6.4E-133 T 29-03-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 Y880_RS04440 a8f3a1c2daabeec968d9599383441cca 332 Gene3D G3DSA:3.40.190.10 27 130 8.3E-16 T 29-03-2018 Y880_RS26535 effd85c900a7298e9b23fb905aeb499c 290 Gene3D G3DSA:3.90.1530.10 24 127 1.7E-38 T 29-03-2018 Y880_RS26535 effd85c900a7298e9b23fb905aeb499c 290 Gene3D G3DSA:1.10.10.730 128 162 5.9E-19 T 29-03-2018 Y880_RS26535 effd85c900a7298e9b23fb905aeb499c 290 Gene3D G3DSA:1.10.10.10 163 281 0.0014 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26535 effd85c900a7298e9b23fb905aeb499c 290 SMART SM00470 37 127 5.3E-39 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS26535 effd85c900a7298e9b23fb905aeb499c 290 SUPERFAMILY SSF110849 36 180 1.2E-34 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS26535 effd85c900a7298e9b23fb905aeb499c 290 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 34 204 7.1E-64 T 29-03-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Y880_RS26535 effd85c900a7298e9b23fb905aeb499c 290 Pfam PF02195 ParB-like nuclease domain 38 127 4.0E-30 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 Gene3D G3DSA:3.40.980.10 155 328 1.6E-52 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 181 317 1.2E-31 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 Gene3D G3DSA:2.170.190.11 66 146 1.2E-23 T 29-03-2018 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 SUPERFAMILY SSF53218 182 325 3.66E-41 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 257 290 - T 29-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 Gene3D G3DSA:2.40.340.10 331 402 1.2E-13 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 Gene3D G3DSA:3.90.105.10 32 65 2.3E-9 T 29-03-2018 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 SMART SM00852 185 321 1.8E-40 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 Pfam PF03454 MoeA C-terminal region (domain IV) 335 400 4.6E-15 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 Pfam PF03453 MoeA N-terminal region (domain I and II) 12 172 2.3E-42 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 SUPERFAMILY SSF63882 8 181 1.06E-52 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 SUPERFAMILY SSF63867 330 402 1.44E-15 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS13145 05abf27f6b7d6663e38875dfeda4f5b8 405 Pfam PF00994 Probable molybdopterin binding domain 186 319 2.0E-27 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS16715 5554e5b616e5e66e4527b064026ffd0f 231 Pfam PF04391 Protein of unknown function (DUF533) 41 223 3.3E-66 T 29-03-2018 IPR007486 Inner membrane protein YebE Y880_RS16715 5554e5b616e5e66e4527b064026ffd0f 231 SUPERFAMILY SSF158682 76 227 2.09E-22 T 29-03-2018 Y880_RS16715 5554e5b616e5e66e4527b064026ffd0f 231 Gene3D G3DSA:1.10.3680.10 85 230 1.7E-12 T 29-03-2018 IPR029024 TerB-like Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 PIRSF PIRSF000770 1 246 1.0E-35 T 29-03-2018 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 Pfam PF04542 Sigma-70 region 2 22 94 8.1E-20 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 PRINTS PR00046 Major sigma-70 factor signature 194 206 2.3E-11 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 PRINTS PR00046 Major sigma-70 factor signature 211 226 2.3E-11 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 PRINTS PR00046 Major sigma-70 factor signature 226 237 2.3E-11 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 PRINTS PR00046 Major sigma-70 factor signature 49 62 2.3E-11 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 SUPERFAMILY SSF88659 96 163 9.59E-13 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 241 3.9E-34 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 Gene3D G3DSA:1.10.1740.10 6 92 1.7E-23 T 29-03-2018 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 SUPERFAMILY SSF88946 10 94 4.97E-26 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 Pfam PF04539 Sigma-70 region 3 103 163 1.0E-9 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 8 244 68.114 T 29-03-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 49 62 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 22 241 1.5E-82 T 29-03-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 Pfam PF04545 Sigma-70, region 4 190 239 6.1E-19 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 Gene3D G3DSA:1.10.10.10 152 244 9.4E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 Gene3D G3DSA:1.10.10.10 96 145 3.0E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04245 44e3cbd90fd4f72dbf9f8d56bf170d86 247 SUPERFAMILY SSF88659 163 244 1.44E-20 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 26 752 0.0 T 29-03-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 SUPERFAMILY SSF56601 319 341 4.7E-119 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 SUPERFAMILY SSF56601 370 756 4.7E-119 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 Gene3D G3DSA:3.30.2060.10 70 156 1.1E-24 T 29-03-2018 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 Gene3D G3DSA:1.10.3810.10 169 362 6.7E-66 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 Pfam PF00905 Penicillin binding protein transpeptidase domain 431 659 8.2E-18 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 Pfam PF00912 Transglycosylase 166 336 5.7E-57 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 SUPERFAMILY SSF53955 163 360 3.94E-66 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 Pfam PF14814 Bifunctional transglycosylase second domain 71 154 6.1E-24 T 29-03-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 Gene3D G3DSA:3.40.710.10 363 751 3.4E-103 T 29-03-2018 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 PIRSF PIRSF002799 1 774 0.0 T 29-03-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS21975 9ede5cf71513fb4e79a1b219102e2414 774 Gene3D G3DSA:1.20.5.100 5 53 6.1E-14 T 29-03-2018 Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 Pfam PF16925 Bacterial transcriptional repressor C-terminal 104 187 6.7E-10 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 Gene3D G3DSA:1.10.10.60 47 82 1.3E-12 T 29-03-2018 Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 SUPERFAMILY SSF46689 2 73 1.74E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 Gene3D G3DSA:1.10.10.60 6 46 2.6E-14 T 29-03-2018 Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.0E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.0E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 54 1.3E-12 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 SUPERFAMILY SSF48498 81 192 1.75E-25 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS08190 5bc91a983e491bfcaece9e33a155f90d 194 Gene3D G3DSA:1.10.357.10 83 193 2.8E-22 T 29-03-2018 Y880_RS12965 c5163c575e1f1c9e22ad94bfb6b5b5cd 342 Pfam PF02424 ApbE family 35 315 1.1E-80 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 Y880_RS12965 c5163c575e1f1c9e22ad94bfb6b5b5cd 342 SUPERFAMILY SSF143631 29 334 3.66E-95 T 29-03-2018 IPR003374 ApbE-like domain Y880_RS12965 c5163c575e1f1c9e22ad94bfb6b5b5cd 342 PIRSF PIRSF006268 10 334 8.2E-84 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 Y880_RS12965 c5163c575e1f1c9e22ad94bfb6b5b5cd 342 Gene3D G3DSA:3.10.520.10 38 323 1.6E-54 T 29-03-2018 Y880_RS11000 7d32025ecc23d2397a120fffaa26f0d4 287 SUPERFAMILY SSF103481 44 143 7.72E-10 T 29-03-2018 Y880_RS11000 7d32025ecc23d2397a120fffaa26f0d4 287 Pfam PF00892 EamA-like transporter family 14 140 5.2E-10 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS11000 7d32025ecc23d2397a120fffaa26f0d4 287 Pfam PF00892 EamA-like transporter family 153 283 3.8E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS11000 7d32025ecc23d2397a120fffaa26f0d4 287 SUPERFAMILY SSF103481 194 285 9.68E-13 T 29-03-2018 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 122 7.9E-27 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 SUPERFAMILY SSF47203 231 380 8.54E-48 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 220 4.8E-24 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 Gene3D G3DSA:1.20.140.10 221 381 3.1E-54 T 29-03-2018 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 Gene3D G3DSA:1.10.540.10 1 121 1.5E-31 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 SUPERFAMILY SSF56645 5 244 3.27E-74 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 380 2.8E-46 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS04690 b401e99726aa53e3cf5c753016d67da0 382 Gene3D G3DSA:2.40.110.10 122 220 1.9E-37 T 29-03-2018 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 288 402 4.5E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF00672 HAMP domain 185 234 3.2E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF08448 PAS fold 294 397 6.8E-9 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00304 185 238 1.4E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 609 1.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 651 664 1.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 644 1.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 613 623 1.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF00512 His Kinase A (phospho-acceptor) domain 413 499 1.3E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 Gene3D G3DSA:1.10.287.130 406 498 4.2E-12 T 29-03-2018 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF55874 506 665 1.7E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 Gene3D G3DSA:3.30.565.10 500 668 2.4E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00388 412 502 2.6E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF47384 408 502 2.55E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00091 287 352 3.8E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00387 550 667 2.5E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF158472 185 234 3.27E-7 T 29-03-2018 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 554 666 1.4E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 Gene3D G3DSA:3.30.450.20 272 405 1.6E-15 T 29-03-2018 Y880_RS20285 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF55785 275 395 4.54E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 PIRSF PIRSF004692 1 324 6.6E-133 T 29-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 Pfam PF01380 SIS domain 41 172 3.7E-32 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 Gene3D G3DSA:3.40.50.10490 2 199 8.6E-57 T 29-03-2018 Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 Pfam PF00571 CBS domain 217 258 1.0E-4 T 29-03-2018 IPR000644 CBS domain Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 Pfam PF00571 CBS domain 277 321 6.0E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 Gene3D G3DSA:3.10.580.10 200 270 5.9E-9 T 29-03-2018 Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 SUPERFAMILY SSF53697 9 322 1.65E-69 T 29-03-2018 Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 314 1.6E-113 T 29-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 Gene3D G3DSA:3.10.580.10 271 323 4.2E-10 T 29-03-2018 Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 SMART SM00116 210 258 3.0 T 29-03-2018 IPR000644 CBS domain Y880_RS20590 590f1a6178501813f74dc44b5861d6f0 324 SMART SM00116 275 323 0.02 T 29-03-2018 IPR000644 CBS domain Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 SUPERFAMILY SSF53335 2 263 1.1E-63 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 29 43 1.0E-14 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 7 23 1.0E-14 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 169 181 1.0E-14 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 48 61 1.0E-14 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 TIGRFAM TIGR00571 dam: DNA adenine methylase 3 262 3.6E-64 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 172 178 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 PIRSF PIRSF000398 1 263 7.3E-59 T 29-03-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 Gene3D G3DSA:3.40.50.150 1 263 3.0E-39 T 29-03-2018 Y880_RS27890 a5ec4e97a4d08e74029341b297218763 263 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 7 243 7.8E-51 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 SMART SM00345 25 84 5.8E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 SUPERFAMILY SSF46785 16 87 1.13E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 Pfam PF07702 UTRA domain 106 240 4.3E-34 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 2.9E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 2.9E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 Gene3D G3DSA:1.10.10.10 9 84 6.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 SUPERFAMILY SSF64288 72 247 4.4E-44 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 Gene3D G3DSA:3.40.1410.10 85 247 4.9E-40 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 SMART SM00866 104 240 2.1E-33 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS16950 ce70cf95c596ce5c328024196225289d 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 84 9.4E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 SUPERFAMILY SSF89095 308 413 5.23E-35 T 29-03-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 155 169 - T 29-03-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 12 490 2.9E-171 T 29-03-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 SUPERFAMILY SSF55931 15 307 6.47E-120 T 29-03-2018 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 Gene3D G3DSA:1.10.10.410 426 491 1.4E-23 T 29-03-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 Pfam PF02934 GatB/GatE catalytic domain 16 299 1.8E-111 T 29-03-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 SMART SM00845 339 490 2.2E-78 T 29-03-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 13 491 38.66 T 29-03-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Y880_RS20725 bc3bc1806884b552ea4a7dfe6833be4f 492 Pfam PF02637 GatB domain 339 490 5.2E-52 T 29-03-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Y880_RS29130 b44985cfe3ec90274a2e573baf59abac 106 PIRSF PIRSF034456 1 106 1.9E-54 T 29-03-2018 IPR017028 Uncharacterised conserved protein UCP034456 Y880_RS27980 8177fbe2c2c0e9d7a742f77272f374bc 94 SUPERFAMILY SSF54909 6 81 6.52E-10 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS27980 8177fbe2c2c0e9d7a742f77272f374bc 94 Gene3D G3DSA:3.30.70.100 2 69 9.2E-8 T 29-03-2018 Y880_RS27980 8177fbe2c2c0e9d7a742f77272f374bc 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 69 2.9E-12 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 PIRSF PIRSF000137 1 545 3.5E-150 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 SUPERFAMILY SSF51905 6 296 3.17E-89 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 SUPERFAMILY SSF51905 482 541 3.17E-89 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 Pfam PF05199 GMC oxidoreductase 397 533 2.4E-43 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 262 276 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 Gene3D G3DSA:4.10.450.10 49 112 2.7E-24 T 29-03-2018 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 90 113 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 Gene3D G3DSA:3.30.560.10 113 495 3.2E-109 T 29-03-2018 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 SUPERFAMILY SSF54373 298 483 1.08E-50 T 29-03-2018 Y880_RS18740 7d10872eebcbcfba204800c24a360646 559 Pfam PF00732 GMC oxidoreductase 9 302 2.1E-86 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 Pfam PF00072 Response regulator receiver domain 13 124 1.7E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 198 386 3.7E-39 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 SUPERFAMILY SSF55874 493 551 8.18E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 SUPERFAMILY SSF55874 443 462 8.18E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 Gene3D G3DSA:3.60.40.10 174 393 6.6E-17 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 SUPERFAMILY SSF52172 10 150 1.71E-38 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 Gene3D G3DSA:3.30.565.10 425 564 1.9E-8 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 Pfam PF13581 Histidine kinase-like ATPase domain 494 563 2.2E-9 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 Gene3D G3DSA:3.40.50.2300 5 173 4.9E-39 T 29-03-2018 Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 SMART SM00448 11 124 4.2E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14815 ec74d955d0410bf5aa47bae37cfdf9db 571 SMART SM00331 186 386 1.2E-5 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 204 1.3E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 Pfam PF00072 Response regulator receiver domain 4 116 1.5E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 SMART SM00448 2 115 4.0E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 Gene3D G3DSA:1.10.10.10 127 214 1.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 SMART SM00421 147 204 4.4E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 SUPERFAMILY SSF46894 132 211 2.07E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 5.5E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 5.5E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 5.5E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 Gene3D G3DSA:3.40.50.2300 1 126 1.8E-33 T 29-03-2018 Y880_RS10335 b064e39880123ef70b4ed65f4a126ca1 214 SUPERFAMILY SSF52172 2 132 1.18E-32 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 SUPERFAMILY SSF52540 5 255 5.9E-69 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 265 3.1E-4 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 503 528 3.6E-5 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 Pfam PF00005 ABC transporter 26 184 2.6E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 Pfam PF00005 ABC transporter 302 452 2.3E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 SUPERFAMILY SSF52540 275 523 1.78E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 SMART SM00382 34 234 1.0E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 SMART SM00382 310 501 2.9E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 Gene3D G3DSA:3.40.50.300 271 534 4.1E-70 T 29-03-2018 Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 Gene3D G3DSA:3.40.50.300 2 270 3.7E-73 T 29-03-2018 Y880_RS06165 9399329ceb6a6258233aa68246adc457 536 ProSitePatterns PS00211 ABC transporters family signature. 424 438 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 Gene3D G3DSA:3.40.50.620 111 452 4.6E-55 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 1 587 4.9E-167 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 158 171 5.7E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 134 150 5.7E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 119 134 5.7E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 306 327 5.7E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 SUPERFAMILY SSF55190 1 103 7.85E-24 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 Pfam PF00750 tRNA synthetases class I (R) 101 457 1.6E-125 T 29-03-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 SMART SM01016 3 91 2.8E-38 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 587 26.626 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 Gene3D G3DSA:1.10.730.10 453 587 3.4E-40 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 Pfam PF05746 DALR anticodon binding domain 471 587 1.8E-31 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 SMART SM00836 471 587 8.8E-36 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 90 9.2E-25 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 127 138 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 SUPERFAMILY SSF52374 114 464 9.85E-89 T 29-03-2018 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 SUPERFAMILY SSF47323 465 587 3.53E-33 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS23810 fa306919f2a671a77699f7dd57e323a7 587 Gene3D G3DSA:3.30.1360.70 1 110 5.8E-30 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 Gene3D G3DSA:2.60.40.10 134 231 2.3E-13 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 Gene3D G3DSA:2.60.40.10 22 130 4.9E-20 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 155 215 6.7E-10 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 SUPERFAMILY SSF49354 13 130 3.14E-22 T 29-03-2018 IPR008962 PapD-like Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 PRINTS PR00969 Pili chaperone signature 114 129 8.2E-18 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 PRINTS PR00969 Pili chaperone signature 149 164 8.2E-18 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 PRINTS PR00969 Pili chaperone signature 63 84 8.2E-18 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 PRINTS PR00969 Pili chaperone signature 91 108 8.2E-18 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 SUPERFAMILY SSF49584 133 219 3.66E-12 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS29180 393838a0596bb58dc9765cc7c18f426b 233 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 33 130 1.3E-20 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF00679 Elongation factor G C-terminus 402 487 7.4E-19 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:3.30.70.870 291 370 5.3E-29 T 29-03-2018 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 93 104 8.8E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 129 138 8.8E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 77 87 8.8E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 9 22 8.8E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 52 60 8.8E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 SUPERFAMILY SSF54980 295 373 1.47E-18 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 1.6E-51 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 SUPERFAMILY SSF54980 403 496 4.65E-24 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:3.40.50.300 3 188 2.6E-35 T 29-03-2018 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 175 3.0E-18 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF03144 Elongation factor Tu domain 2 208 278 2.1E-10 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 SUPERFAMILY SSF52540 3 235 5.7E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 302.884 T 29-03-2018 IPR006297 Elongation factor 4 GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:3.30.70.240 392 552 3.2E-27 T 29-03-2018 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 8.6E-51 T 29-03-2018 IPR013842 GTP-binding protein LepA, C-terminal Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 TIGRFAM TIGR01393 lepA: elongation factor 4 6 598 2.7E-295 T 29-03-2018 IPR006297 Elongation factor 4 GO:0005525 Y880_RS00450 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:2.40.30.10 191 290 6.8E-24 T 29-03-2018 Y880_RS04845 2aa12a5758b629c8b53c113002cedee0 79 Hamap MF_00413 Sulfurtransferase TusA [tusA]. 1 78 25.787 T 29-03-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 Y880_RS04845 2aa12a5758b629c8b53c113002cedee0 79 SUPERFAMILY SSF64307 4 76 2.62E-25 T 29-03-2018 IPR001455 TusA-like domain Y880_RS04845 2aa12a5758b629c8b53c113002cedee0 79 Gene3D G3DSA:3.30.110.40 1 78 1.6E-29 T 29-03-2018 IPR001455 TusA-like domain Y880_RS04845 2aa12a5758b629c8b53c113002cedee0 79 Pfam PF01206 Sulfurtransferase TusA 8 76 3.6E-24 T 29-03-2018 IPR001455 TusA-like domain Y880_RS04845 2aa12a5758b629c8b53c113002cedee0 79 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 9 33 - T 29-03-2018 IPR001455 TusA-like domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 702 793 8.7E-12 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SMART SM00062 41 262 1.4E-25 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Gene3D G3DSA:3.30.450.20 305 439 2.9E-25 T 29-03-2018 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Gene3D G3DSA:3.40.190.10 164 268 5.9E-4 T 29-03-2018 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SMART SM00086 527 568 13.0 T 29-03-2018 IPR001610 PAC motif Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SMART SM00086 396 436 2.5E-4 T 29-03-2018 IPR001610 PAC motif Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SUPERFAMILY SSF55785 335 445 3.89E-23 T 29-03-2018 IPR000014 PAS domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SUPERFAMILY SSF55874 671 792 5.18E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SMART SM00091 448 521 0.12 T 29-03-2018 IPR000014 PAS domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SMART SM00091 323 389 8.2E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 260 1.0E-26 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Pfam PF08447 PAS fold 476 560 2.6E-15 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Pfam PF07730 Histidine kinase 596 662 5.6E-14 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 329 443 1.1E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 474 575 1.4E-10 T 29-03-2018 IPR000014 PAS domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SUPERFAMILY SSF55785 433 566 5.39E-21 T 29-03-2018 IPR000014 PAS domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Gene3D G3DSA:3.30.565.10 588 793 6.6E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Pfam PF08448 PAS fold 330 438 5.3E-11 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Gene3D G3DSA:3.30.450.20 440 587 8.0E-27 T 29-03-2018 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SMART SM00387 700 794 4.1E-14 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29710 881c290f64f039284f7263d601915d6b 797 PRINTS PR00344 Bacterial sensor protein C-terminal signature 778 791 3.3E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 PRINTS PR00344 Bacterial sensor protein C-terminal signature 754 772 3.3E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 PRINTS PR00344 Bacterial sensor protein C-terminal signature 736 750 3.3E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 Gene3D G3DSA:3.40.190.10 25 163 9.4E-18 T 29-03-2018 Y880_RS29710 881c290f64f039284f7263d601915d6b 797 SUPERFAMILY SSF53850 37 262 2.26E-36 T 29-03-2018 Y880_RS08215 73f05f0d5e2df9bbd7d0e3c69aefff45 294 SUPERFAMILY SSF140486 6 129 4.71E-61 T 29-03-2018 IPR028997 PA2201-like, N-terminal Y880_RS08215 73f05f0d5e2df9bbd7d0e3c69aefff45 294 Pfam PF08929 Domain of unknown function (DUF1911) 177 284 3.2E-23 T 29-03-2018 IPR015025 Domain of unknown function DUF1911 Y880_RS08215 73f05f0d5e2df9bbd7d0e3c69aefff45 294 SUPERFAMILY SSF140731 137 291 4.71E-44 T 29-03-2018 IPR028983 PA2201-like, C-terminal Y880_RS08215 73f05f0d5e2df9bbd7d0e3c69aefff45 294 Gene3D G3DSA:1.20.1440.70 8 129 4.6E-62 T 29-03-2018 IPR028997 PA2201-like, N-terminal Y880_RS08215 73f05f0d5e2df9bbd7d0e3c69aefff45 294 Gene3D G3DSA:1.10.3920.10 137 292 1.4E-30 T 29-03-2018 IPR028983 PA2201-like, C-terminal Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 SUPERFAMILY SSF47203 226 379 2.09E-58 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 PIRSF PIRSF016578 3 379 1.3E-22 T 29-03-2018 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 Gene3D G3DSA:2.40.110.10 120 215 3.7E-40 T 29-03-2018 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 377 1.4E-48 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 Gene3D G3DSA:1.20.140.10 216 382 4.5E-60 T 29-03-2018 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 Gene3D G3DSA:1.10.540.10 1 119 7.9E-35 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 SUPERFAMILY SSF56645 1 240 2.75E-81 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 1.3E-30 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS00340 e2f0618961582fafa707fccf95f443ee 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 2.0E-27 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Pfam PF02581 Thiamine monophosphate synthase 132 309 9.4E-34 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 SUPERFAMILY SSF55811 2 126 5.82E-39 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Gene3D G3DSA:3.20.20.70 127 313 1.5E-26 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 PRINTS PR00502 NUDIX hydrolase family signature 47 62 7.0E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 PRINTS PR00502 NUDIX hydrolase family signature 33 47 7.0E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 SUPERFAMILY SSF51391 114 311 6.93E-44 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Pfam PF14815 NUDIX domain 8 124 1.6E-21 T 29-03-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 TIGRFAM TIGR00586 mutt: mutator mutT protein 2 125 2.4E-32 T 29-03-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 Y880_RS20295 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Gene3D G3DSA:3.90.79.10 1 126 1.3E-29 T 29-03-2018 Y880_RS07505 892f3ca33c4619a92a6f593030611c6e 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 1 173 8.0E-22 T 29-03-2018 IPR023214 HAD-like domain Y880_RS07505 892f3ca33c4619a92a6f593030611c6e 222 SUPERFAMILY SSF56784 1 194 9.8E-43 T 29-03-2018 IPR023214 HAD-like domain Y880_RS07505 892f3ca33c4619a92a6f593030611c6e 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 53 172 8.1E-19 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS07505 892f3ca33c4619a92a6f593030611c6e 222 Gene3D G3DSA:3.40.50.1000 64 200 1.1E-28 T 29-03-2018 IPR023214 HAD-like domain Y880_RS07505 892f3ca33c4619a92a6f593030611c6e 222 Gene3D G3DSA:1.10.150.240 11 63 9.7E-5 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 179 357 1.1E-10 T 29-03-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 Gene3D G3DSA:2.60.40.1250 28 150 8.4E-36 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 Gene3D G3DSA:3.40.30.10 476 588 2.5E-15 T 29-03-2018 Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 Pfam PF11412 Disulphide bond corrector protein DsbC 32 138 8.5E-31 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 Pfam PF13899 Thioredoxin-like 478 549 1.4E-12 T 29-03-2018 Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 586 38.445 T 29-03-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 SUPERFAMILY SSF52833 482 580 5.48E-20 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 ProSitePatterns PS00194 Thioredoxin family active site. 494 512 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS09730 5f1bfd3d408aac701839f38d58b4d6d0 589 SUPERFAMILY SSF74863 31 141 9.68E-35 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y880_RS00655 72eea03dcfd362917cd1e9cd84319128 255 SUPERFAMILY SSF47090 182 253 2.98E-18 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS00655 72eea03dcfd362917cd1e9cd84319128 255 Gene3D G3DSA:1.10.101.10 173 255 7.2E-8 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS00655 72eea03dcfd362917cd1e9cd84319128 255 SUPERFAMILY SSF55846 10 174 1.57E-43 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS00655 72eea03dcfd362917cd1e9cd84319128 255 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 159 1.1E-24 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS00655 72eea03dcfd362917cd1e9cd84319128 255 SMART SM00644 7 158 1.3E-46 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS00655 72eea03dcfd362917cd1e9cd84319128 255 Gene3D G3DSA:3.40.80.10 17 172 2.0E-40 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS14225 08774e98d416bf2b789f5d86d4484c2a 285 PIRSF PIRSF006232 3 285 2.9E-97 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y880_RS14225 08774e98d416bf2b789f5d86d4484c2a 285 Gene3D G3DSA:2.60.120.10 246 285 1.8E-7 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS14225 08774e98d416bf2b789f5d86d4484c2a 285 Gene3D G3DSA:2.60.120.10 1 245 4.7E-80 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS14225 08774e98d416bf2b789f5d86d4484c2a 285 SUPERFAMILY SSF51182 7 281 1.85E-85 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS14225 08774e98d416bf2b789f5d86d4484c2a 285 Pfam PF02678 Pirin 22 122 1.2E-37 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y880_RS14225 08774e98d416bf2b789f5d86d4484c2a 285 Pfam PF05726 Pirin C-terminal cupin domain 181 282 9.6E-33 T 29-03-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 Pfam PF13616 PPIC-type PPIASE domain 282 385 1.8E-28 T 29-03-2018 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 SUPERFAMILY SSF54534 285 387 5.76E-34 T 29-03-2018 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 SUPERFAMILY SSF54534 177 281 9.81E-26 T 29-03-2018 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 SUPERFAMILY SSF109998 30 206 1.28E-44 T 29-03-2018 IPR027304 Trigger factor/SurA domain Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 Gene3D G3DSA:3.10.50.40 174 285 2.0E-23 T 29-03-2018 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 Gene3D G3DSA:3.10.50.40 286 395 7.1E-34 T 29-03-2018 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 Gene3D G3DSA:1.10.4030.10 28 153 7.2E-22 T 29-03-2018 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 Pfam PF09312 SurA N-terminal domain 30 147 6.5E-46 T 29-03-2018 IPR015391 SurA N-terminal Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 Hamap MF_01183 Chaperone SurA [surA]. 12 430 33.027 T 29-03-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 Y880_RS29680 a1c3ef147d8db149c24b84c4057ee411 430 Pfam PF00639 PPIC-type PPIASE domain 184 276 6.6E-19 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 Y880_RS19265 9fbbb93a539feb91243cdc77d49385ba 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 527 4.8E-21 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS19265 9fbbb93a539feb91243cdc77d49385ba 540 Gene3D G3DSA:3.40.50.980 190 340 1.7E-35 T 29-03-2018 Y880_RS19265 9fbbb93a539feb91243cdc77d49385ba 540 SUPERFAMILY SSF56801 13 538 2.22E-142 T 29-03-2018 Y880_RS19265 9fbbb93a539feb91243cdc77d49385ba 540 Gene3D G3DSA:2.30.38.10 363 437 1.3E-20 T 29-03-2018 Y880_RS19265 9fbbb93a539feb91243cdc77d49385ba 540 Gene3D G3DSA:3.40.50.980 18 189 9.9E-37 T 29-03-2018 Y880_RS19265 9fbbb93a539feb91243cdc77d49385ba 540 Gene3D G3DSA:3.30.300.30 438 540 5.7E-28 T 29-03-2018 Y880_RS19265 9fbbb93a539feb91243cdc77d49385ba 540 Pfam PF00501 AMP-binding enzyme 25 443 1.9E-94 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS19090 0aa91f6602f1f427eff2a7467105f52f 152 Gene3D G3DSA:3.40.630.30 5 139 1.2E-27 T 29-03-2018 Y880_RS19090 0aa91f6602f1f427eff2a7467105f52f 152 Pfam PF00583 Acetyltransferase (GNAT) family 38 138 9.7E-18 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS19090 0aa91f6602f1f427eff2a7467105f52f 152 SUPERFAMILY SSF55729 9 138 1.99E-33 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS18100 a600e5a6183b9917a21ee9d161c54c67 499 Hamap MF_01932 AMP nucleosidase [amn]. 16 499 59.128 T 29-03-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y880_RS18100 a600e5a6183b9917a21ee9d161c54c67 499 SUPERFAMILY SSF53167 22 499 1.44E-143 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Y880_RS18100 a600e5a6183b9917a21ee9d161c54c67 499 Gene3D G3DSA:3.30.1730.10 19 182 7.4E-48 T 29-03-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y880_RS18100 a600e5a6183b9917a21ee9d161c54c67 499 Gene3D G3DSA:3.40.50.1580 188 482 8.4E-58 T 29-03-2018 Y880_RS18100 a600e5a6183b9917a21ee9d161c54c67 499 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 25 179 5.6E-50 T 29-03-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y880_RS18100 a600e5a6183b9917a21ee9d161c54c67 499 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 24 499 2.2E-251 T 29-03-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y880_RS18100 a600e5a6183b9917a21ee9d161c54c67 499 Pfam PF01048 Phosphorylase superfamily 284 468 2.1E-16 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 SUPERFAMILY SSF47240 1 154 1.74E-46 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 PIRSF PIRSF002560 1 154 2.9E-63 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 85 105 4.2E-42 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 128 149 4.2E-42 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 23 43 4.2E-42 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 3 22 4.2E-42 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 106 126 4.2E-42 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 44 64 4.2E-42 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 Gene3D G3DSA:1.20.1260.10 2 151 1.1E-39 T 29-03-2018 IPR012347 Ferritin-related Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 3.1E-48 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS19435 1bd2083a5bf30f99273964692f7c5415 154 Pfam PF00210 Ferritin-like domain 8 144 9.6E-38 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 1.7E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 334 1.7E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 287 301 1.7E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 SMART SM00091 5 73 2.8E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 Gene3D G3DSA:1.10.287.130 117 192 2.7E-14 T 29-03-2018 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 SMART SM00388 131 196 3.2E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 SUPERFAMILY SSF47384 125 193 5.3E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 SUPERFAMILY SSF55785 6 104 2.44E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 Gene3D G3DSA:3.30.565.10 193 355 1.0E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 Pfam PF00512 His Kinase A (phospho-acceptor) domain 135 188 1.3E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 Gene3D G3DSA:3.30.450.20 3 114 3.0E-13 T 29-03-2018 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 236 354 2.3E-14 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 SMART SM00387 235 355 2.7E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 Pfam PF00989 PAS fold 8 104 1.8E-6 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS24185 9361895965eaeb612733d536e03c0fcf 358 SUPERFAMILY SSF55874 198 353 9.56E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17315 701db74427bdb380b87fade9f68c21f3 112 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 27 104 5.7E-29 T 29-03-2018 IPR003849 Preprotein translocase YajC Y880_RS17315 701db74427bdb380b87fade9f68c21f3 112 Pfam PF02699 Preprotein translocase subunit 28 101 1.3E-28 T 29-03-2018 IPR003849 Preprotein translocase YajC Y880_RS17315 701db74427bdb380b87fade9f68c21f3 112 PRINTS PR01853 Bacterial YajC preprotein translocase signature 24 44 4.7E-12 T 29-03-2018 IPR003849 Preprotein translocase YajC Y880_RS17315 701db74427bdb380b87fade9f68c21f3 112 PRINTS PR01853 Bacterial YajC preprotein translocase signature 62 80 4.7E-12 T 29-03-2018 IPR003849 Preprotein translocase YajC Y880_RS17315 701db74427bdb380b87fade9f68c21f3 112 SMART SM01323 22 104 5.8E-42 T 29-03-2018 IPR003849 Preprotein translocase YajC Y880_RS17315 701db74427bdb380b87fade9f68c21f3 112 Gene3D G3DSA:2.40.33.10 49 100 4.7E-4 T 29-03-2018 Y880_RS02130 74db2616a135e90083102c8074911692 199 SUPERFAMILY SSF51735 2 197 5.54E-24 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS02130 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.5E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02130 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 144 2.5E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02130 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 162 2.5E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02130 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 65 2.5E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02130 74db2616a135e90083102c8074911692 199 Gene3D G3DSA:3.40.50.720 1 199 5.3E-26 T 29-03-2018 Y880_RS02130 74db2616a135e90083102c8074911692 199 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 26 172 3.4E-13 T 29-03-2018 Y880_RS22895 e4653b518844416529f3665cff0f5ddb 114 Gene3D G3DSA:3.30.1450.10 20 97 4.1E-5 T 29-03-2018 Y880_RS22895 e4653b518844416529f3665cff0f5ddb 114 Pfam PF04355 SmpA / OmlA family 31 97 4.0E-14 T 29-03-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Y880_RS03315 3401976e612652d2249428de91807fe2 606 SUPERFAMILY SSF56645 38 279 3.27E-60 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS03315 3401976e612652d2249428de91807fe2 606 Gene3D G3DSA:1.10.540.10 23 159 2.4E-21 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS03315 3401976e612652d2249428de91807fe2 606 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 7.1E-8 T 29-03-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y880_RS03315 3401976e612652d2249428de91807fe2 606 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 493 598 2.4E-22 T 29-03-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y880_RS03315 3401976e612652d2249428de91807fe2 606 SUPERFAMILY SSF47203 287 474 1.43E-43 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS03315 3401976e612652d2249428de91807fe2 606 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 2.3E-19 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS03315 3401976e612652d2249428de91807fe2 606 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 41 157 3.8E-15 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS03315 3401976e612652d2249428de91807fe2 606 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 454 6.1E-19 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS03315 3401976e612652d2249428de91807fe2 606 Gene3D G3DSA:1.20.140.10 278 464 1.2E-39 T 29-03-2018 Y880_RS03315 3401976e612652d2249428de91807fe2 606 Gene3D G3DSA:2.40.110.10 161 274 4.0E-25 T 29-03-2018 Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 Gene3D G3DSA:3.40.50.300 572 732 3.5E-17 T 29-03-2018 Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 Pfam PF00271 Helicase conserved C-terminal domain 585 695 1.9E-6 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 Gene3D G3DSA:3.40.50.10810 55 542 1.0E-25 T 29-03-2018 Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 SUPERFAMILY SSF52540 69 183 1.92E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 SUPERFAMILY SSF52540 345 411 1.92E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 SUPERFAMILY SSF52540 571 736 1.49E-28 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 SUPERFAMILY SSF52540 351 412 1.49E-28 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11820 2d089b177f25fc32bf91887b55e487c4 759 SMART SM00487 69 413 6.3E-10 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Gene3D G3DSA:1.20.120.160 630 740 2.0E-18 T 29-03-2018 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SUPERFAMILY SSF47226 625 736 8.1E-19 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 472 1.0E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 1.0E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 1.0E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 1.0E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Pfam PF08448 PAS fold 119 229 6.6E-9 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 313 5.6E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Gene3D G3DSA:3.30.565.10 308 475 2.0E-47 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Pfam PF00072 Response regulator receiver domain 500 614 6.1E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SMART SM00448 498 614 8.4E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SUPERFAMILY SSF47384 230 314 1.12E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SMART SM00387 360 475 2.1E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SUPERFAMILY SSF55785 99 225 3.49E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SUPERFAMILY SSF52172 497 658 5.91E-32 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Gene3D G3DSA:1.10.287.130 246 307 5.2E-16 T 29-03-2018 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Pfam PF01627 Hpt domain 647 730 1.7E-13 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SMART SM00388 247 313 3.6E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 473 2.7E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Gene3D G3DSA:3.40.50.2300 482 629 3.9E-32 T 29-03-2018 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SMART SM00073 636 736 1.6E-5 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 SUPERFAMILY SSF55874 303 471 4.85E-44 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13230 0d9cc52352fcc08337605a0e7bab55d9 741 Gene3D G3DSA:3.30.450.20 89 245 2.0E-17 T 29-03-2018 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Gene3D G3DSA:1.10.287.130 484 557 3.3E-10 T 29-03-2018 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SMART SM00086 414 456 3.2E-7 T 29-03-2018 IPR001610 PAC motif Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SMART SM00086 130 169 11.0 T 29-03-2018 IPR001610 PAC motif Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Gene3D G3DSA:3.30.450.40 172 327 2.7E-14 T 29-03-2018 IPR029016 GAF domain-like Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Pfam PF08448 PAS fold 74 171 1.2E-7 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Pfam PF08448 PAS fold 351 458 1.4E-11 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Pfam PF00512 His Kinase A (phospho-acceptor) domain 497 559 1.5E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SMART SM00091 345 411 6.1E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Gene3D G3DSA:3.40.50.2300 734 857 6.9E-26 T 29-03-2018 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Gene3D G3DSA:3.30.450.20 328 483 1.3E-32 T 29-03-2018 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SMART SM00388 496 561 4.8E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 604 720 1.7E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 342 463 1.3E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SUPERFAMILY SSF55785 334 454 2.42E-22 T 29-03-2018 IPR000014 PAS domain Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SMART SM00448 742 850 1.8E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SUPERFAMILY SSF47384 490 558 4.32E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Gene3D G3DSA:3.30.450.20 57 171 3.0E-9 T 29-03-2018 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 PRINTS PR00344 Bacterial sensor protein C-terminal signature 669 679 1.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 PRINTS PR00344 Bacterial sensor protein C-terminal signature 651 665 1.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 PRINTS PR00344 Bacterial sensor protein C-terminal signature 682 700 1.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 PRINTS PR00344 Bacterial sensor protein C-terminal signature 706 719 1.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SUPERFAMILY SSF52172 741 855 7.68E-28 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SUPERFAMILY SSF55781 171 337 2.4E-15 T 29-03-2018 IPR029016 GAF domain-like Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Gene3D G3DSA:3.30.565.10 559 722 4.7E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SUPERFAMILY SSF55785 75 175 1.34E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 Pfam PF00072 Response regulator receiver domain 744 850 7.3E-17 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SUPERFAMILY SSF55874 552 722 2.62E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03105 fb1ddc11690bffc450f7475f84327977 858 SMART SM00387 602 722 1.5E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20430 0f67d0226861aa1917e2d6fd3a6c17e4 197 Pfam PF13580 SIS domain 14 146 9.3E-36 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS20430 0f67d0226861aa1917e2d6fd3a6c17e4 197 Gene3D G3DSA:3.40.50.10490 2 194 1.6E-39 T 29-03-2018 Y880_RS20430 0f67d0226861aa1917e2d6fd3a6c17e4 197 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 2 192 37.827 T 29-03-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 Y880_RS20430 0f67d0226861aa1917e2d6fd3a6c17e4 197 SUPERFAMILY SSF53697 2 193 1.78E-58 T 29-03-2018 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 Pfam PF13183 4Fe-4S dicluster domain 367 422 2.0E-8 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 Pfam PF10531 SLBB domain 290 337 4.9E-8 T 29-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 131 275 2.6E-48 T 29-03-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 4 438 4.2E-193 T 29-03-2018 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 Pfam PF13375 RnfC Barrel sandwich hybrid domain 6 106 2.2E-32 T 29-03-2018 IPR026902 RnfC Barrel sandwich hybrid domain Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 SUPERFAMILY SSF142019 87 294 9.94E-57 T 29-03-2018 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 SUPERFAMILY SSF46548 324 437 4.19E-18 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 478 187.811 T 29-03-2018 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 Gene3D G3DSA:3.30.70.20 195 375 6.2E-4 T 29-03-2018 Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 408 419 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS15570 fc7c3ecb07c3255c6129bcbc58e224e0 478 Gene3D G3DSA:3.30.70.20 376 477 8.8E-18 T 29-03-2018 Y880_RS20025 4d4854571d6a00e9b009fa274398efd5 261 SMART SM00849 29 225 3.7E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS20025 4d4854571d6a00e9b009fa274398efd5 261 Pfam PF00753 Metallo-beta-lactamase superfamily 27 225 2.2E-23 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS20025 4d4854571d6a00e9b009fa274398efd5 261 Gene3D G3DSA:3.60.15.10 21 245 4.3E-28 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS20025 4d4854571d6a00e9b009fa274398efd5 261 SUPERFAMILY SSF56281 12 243 8.65E-32 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS04870 7d20b397a898b8b9488925d1860e2370 117 Pfam PF01042 Endoribonuclease L-PSP 17 114 1.5E-21 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS04870 7d20b397a898b8b9488925d1860e2370 117 SUPERFAMILY SSF55298 14 116 9.42E-30 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS04870 7d20b397a898b8b9488925d1860e2370 117 Gene3D G3DSA:3.30.1330.40 2 117 2.5E-27 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 8 478 1.9E-150 T 29-03-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 233 2.4E-23 T 29-03-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 254 437 1.1E-58 T 29-03-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 488 216.31 T 29-03-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 Gene3D G3DSA:3.40.50.880 253 482 6.3E-25 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 SUPERFAMILY SSF52540 6 240 2.83E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 SUPERFAMILY SSF52317 254 447 5.77E-42 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS03290 91abf782f1c9d760ef8988a74513b351 490 Gene3D G3DSA:3.40.50.300 3 244 2.6E-57 T 29-03-2018 Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 SUPERFAMILY SSF54211 81 160 7.33E-26 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 11 164 2.6E-65 T 29-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 164 33.768 T 29-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 14 75 7.0E-27 T 29-03-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 Gene3D G3DSA:3.30.160.20 12 73 7.5E-25 T 29-03-2018 Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 SUPERFAMILY SSF54768 10 77 1.05E-22 T 29-03-2018 Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 29 61 - T 29-03-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 89 158 8.7E-31 T 29-03-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 Y880_RS19490 fc08e04c3799517c32a377844260ffc9 166 Gene3D G3DSA:3.30.230.10 77 166 1.1E-31 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS01610 d40667151868dd96623c0c5c1d834ac0 69 Pfam PF04102 SlyX 3 69 4.3E-24 T 29-03-2018 IPR007236 SlyX Y880_RS01610 d40667151868dd96623c0c5c1d834ac0 69 Gene3D G3DSA:1.20.5.300 1 47 5.0E-17 T 29-03-2018 Y880_RS01610 d40667151868dd96623c0c5c1d834ac0 69 Hamap MF_00715 Protein SlyX [slyX]. 2 69 17.239 T 29-03-2018 IPR007236 SlyX Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 PIRSF PIRSF039088 2 514 1.5E-233 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 1.4E-44 T 29-03-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 513 3.7E-252 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 93 2.7E-16 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 SUPERFAMILY SSF50615 11 95 2.16E-28 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 1.1E-72 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 50.076 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 SUPERFAMILY SSF47917 384 512 6.02E-45 T 29-03-2018 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 SUPERFAMILY SSF52540 97 382 1.3E-92 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 Gene3D G3DSA:2.40.30.20 4 83 1.2E-32 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 Gene3D G3DSA:1.20.150.20 385 511 3.9E-46 T 29-03-2018 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 367 376 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS26505 b568bae2c12809dee0eead7079fe75f9 514 Gene3D G3DSA:3.40.50.300 84 376 7.8E-111 T 29-03-2018 Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 97 1.0E-45 T 29-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 Pfam PF01386 Ribosomal L25p family 6 94 5.4E-27 T 29-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 102 190 7.7E-29 T 29-03-2018 IPR020057 Ribosomal protein L25, beta domain Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 SUPERFAMILY SSF50715 4 196 1.74E-55 T 29-03-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 Gene3D G3DSA:2.40.240.10 3 97 6.7E-30 T 29-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 175 1.9E-45 T 29-03-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 188 30.687 T 29-03-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y880_RS21730 60511091fa58cb0e3e49ffe818a9741b 204 Gene3D G3DSA:2.170.120.20 101 195 1.7E-29 T 29-03-2018 IPR020057 Ribosomal protein L25, beta domain Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 SMART SM00388 233 292 7.3E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 402 1.1E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 1.1E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 1.1E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 432 3.7E-14 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 SUPERFAMILY SSF47384 217 291 3.34E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 Pfam PF16750 Sensor domain of 2-component histidine kinase 39 148 1.1E-34 T 29-03-2018 IPR031930 2-component histidine kinase, sensor domain Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 Gene3D G3DSA:3.30.565.10 275 445 4.6E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 SUPERFAMILY SSF158472 177 229 5.62E-7 T 29-03-2018 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 SUPERFAMILY SSF55874 282 443 1.7E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 291 1.5E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 Pfam PF00672 HAMP domain 177 228 1.4E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 SMART SM00304 177 232 3.9E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 Gene3D G3DSA:1.10.287.130 223 274 3.7E-9 T 29-03-2018 Y880_RS01445 a9d947b3a143a19a5a76efab0d2aed78 445 SMART SM00387 337 445 2.5E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:3.30.450.20 624 763 4.1E-27 T 29-03-2018 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF00512 His Kinase A (phospho-acceptor) domain 764 829 1.5E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00387 876 992 1.6E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF52172 1007 1135 1.71E-27 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF13426 PAS domain 502 613 6.0E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF55785 344 450 1.31E-21 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00073 1306 1397 9.1E-5 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00086 418 460 0.0089 T 29-03-2018 IPR001610 PAC motif Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00086 572 614 5.3E-6 T 29-03-2018 IPR001610 PAC motif Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00086 702 744 0.012 T 29-03-2018 IPR001610 PAC motif Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00388 764 829 2.1E-23 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:3.30.450.20 476 623 2.3E-25 T 29-03-2018 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:3.30.450.20 330 475 5.3E-29 T 29-03-2018 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF01627 Hpt domain 1315 1398 2.1E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF55874 818 988 4.19E-44 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF08447 PAS fold 649 738 6.2E-17 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF47226 1256 1380 6.02E-17 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF55785 611 742 5.41E-19 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 343 466 1.7E-24 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 500 620 1.2E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM01079 77 267 1.2E-60 T 29-03-2018 IPR006189 CHASE domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:3.40.50.2300 1152 1288 3.5E-35 T 29-03-2018 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:3.30.565.10 833 997 4.7E-44 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:1.10.287.130 764 825 1.4E-18 T 29-03-2018 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF52172 1155 1279 9.82E-35 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF00989 PAS fold 346 457 7.4E-15 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF55785 504 621 6.63E-19 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF00072 Response regulator receiver domain 1161 1270 8.8E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF00072 Response regulator receiver domain 1012 1129 1.2E-13 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00091 626 696 0.0018 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00091 491 559 6.2E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00091 345 411 3.0E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:3.40.50.2300 1005 1151 1.6E-28 T 29-03-2018 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SUPERFAMILY SSF47384 748 830 2.55E-21 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Gene3D G3DSA:1.20.120.160 1289 1417 2.7E-15 T 29-03-2018 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00448 1009 1130 1.5E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 SMART SM00448 1158 1273 2.6E-33 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 952 970 3.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 935 945 3.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 917 931 3.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 976 989 3.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF03924 CHASE domain 80 263 1.3E-44 T 29-03-2018 IPR006189 CHASE domain Y880_RS18810 3c127001f843988ee1e7d3e06022a605 1417 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 876 991 3.6E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18350 d5d604d5c71a2220c773e9264ea287f6 293 Gene3D G3DSA:3.30.450.40 30 217 2.1E-12 T 29-03-2018 IPR029016 GAF domain-like Y880_RS18350 d5d604d5c71a2220c773e9264ea287f6 293 SUPERFAMILY SSF55785 235 278 1.83E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS18350 d5d604d5c71a2220c773e9264ea287f6 293 Pfam PF13188 PAS domain 236 278 3.4E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS18350 d5d604d5c71a2220c773e9264ea287f6 293 SUPERFAMILY SSF55781 69 200 7.06E-10 T 29-03-2018 IPR029016 GAF domain-like Y880_RS18350 d5d604d5c71a2220c773e9264ea287f6 293 Pfam PF01590 GAF domain 73 195 5.1E-8 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS18350 d5d604d5c71a2220c773e9264ea287f6 293 Gene3D G3DSA:3.30.450.20 231 288 1.8E-7 T 29-03-2018 Y880_RS08210 75db52cd117433674a5e548bce49174c 531 Pfam PF00563 EAL domain 281 513 2.9E-55 T 29-03-2018 IPR001633 EAL domain Y880_RS08210 75db52cd117433674a5e548bce49174c 531 SUPERFAMILY SSF141868 281 526 5.36E-66 T 29-03-2018 IPR001633 EAL domain Y880_RS08210 75db52cd117433674a5e548bce49174c 531 Gene3D G3DSA:3.20.20.450 276 530 8.1E-72 T 29-03-2018 IPR001633 EAL domain Y880_RS08210 75db52cd117433674a5e548bce49174c 531 SMART SM00052 274 519 2.5E-71 T 29-03-2018 IPR001633 EAL domain Y880_RS08210 75db52cd117433674a5e548bce49174c 531 Pfam PF12792 CSS motif domain associated with EAL 46 241 5.5E-34 T 29-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Y880_RS15755 f35890dc9ed1ff32c385b91bf416066b 224 TIGRFAM TIGR01298 RNaseT: ribonuclease T 22 221 1.4E-116 T 29-03-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 Y880_RS15755 f35890dc9ed1ff32c385b91bf416066b 224 Hamap MF_00157 Ribonuclease T [rnt]. 1 224 112.439 T 29-03-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 Y880_RS15755 f35890dc9ed1ff32c385b91bf416066b 224 SMART SM00479 30 215 7.7E-24 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS15755 f35890dc9ed1ff32c385b91bf416066b 224 Gene3D G3DSA:3.30.420.10 22 223 2.7E-31 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS15755 f35890dc9ed1ff32c385b91bf416066b 224 Pfam PF00929 Exonuclease 32 206 1.6E-32 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS15755 f35890dc9ed1ff32c385b91bf416066b 224 SUPERFAMILY SSF53098 21 219 3.19E-57 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS07235 352ebdd38253781d834369952ed91d04 134 Gene3D G3DSA:1.10.1660.10 2 58 1.0E-18 T 29-03-2018 Y880_RS07235 352ebdd38253781d834369952ed91d04 134 ProSitePatterns PS00552 MerR-type HTH domain signature. 8 30 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS07235 352ebdd38253781d834369952ed91d04 134 SMART SM00422 5 72 2.4E-17 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS07235 352ebdd38253781d834369952ed91d04 134 Gene3D G3DSA:1.10.1660.10 59 134 5.6E-14 T 29-03-2018 Y880_RS07235 352ebdd38253781d834369952ed91d04 134 Pfam PF13411 MerR HTH family regulatory protein 5 70 4.2E-16 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS07235 352ebdd38253781d834369952ed91d04 134 SUPERFAMILY SSF46955 5 121 2.49E-24 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS09440 942d207aa98cff337bbaffdf4526d4f6 286 SUPERFAMILY SSF51182 11 284 8.19E-84 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS09440 942d207aa98cff337bbaffdf4526d4f6 286 Gene3D G3DSA:2.60.120.10 1 256 7.0E-80 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS09440 942d207aa98cff337bbaffdf4526d4f6 286 Pfam PF05726 Pirin C-terminal cupin domain 182 283 7.6E-30 T 29-03-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Y880_RS09440 942d207aa98cff337bbaffdf4526d4f6 286 PIRSF PIRSF006232 4 286 1.6E-92 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y880_RS09440 942d207aa98cff337bbaffdf4526d4f6 286 Pfam PF02678 Pirin 21 127 2.6E-34 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.30.559.10 1022 1228 7.5E-26 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.30.559.10 2 188 9.4E-23 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF52777 186 436 2.45E-36 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SMART SM00823 Phosphopantetheine attachment site 1987 2059 3.6E-6 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SMART SM00823 Phosphopantetheine attachment site 956 1024 0.0014 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF56801 1472 2001 3.27E-128 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF52777 1045 1238 1.09E-25 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF53474 2056 2341 3.65E-62 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF47336 949 1020 2.49E-17 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF56801 413 969 3.27E-157 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 ProSitePatterns PS00455 Putative AMP-binding domain signature. 591 602 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.40.50.980 1623 1784 1.6E-27 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.40.50.980 597 761 4.9E-40 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.30.300.30 1872 1992 1.5E-26 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.30.300.30 847 959 2.1E-35 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF00550 Phosphopantetheine attachment site 958 1020 2.9E-12 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF00550 Phosphopantetheine attachment site 1992 2055 2.2E-12 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:2.30.38.10 762 842 3.0E-25 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:2.30.38.10 1788 1867 1.9E-23 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF00668 Condensation domain 1057 1458 1.5E-41 T 29-03-2018 IPR001242 Condensation domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF00668 Condensation domain 7 430 5.4E-55 T 29-03-2018 IPR001242 Condensation domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 473 876 2.8E-135 T 29-03-2018 IPR010071 Amino acid adenylation domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1502 1894 3.2E-108 T 29-03-2018 IPR010071 Amino acid adenylation domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.40.50.980 442 596 3.2E-48 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.40.50.980 1476 1622 3.5E-38 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF13193 AMP-binding enzyme C-terminal domain 860 933 2.9E-9 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:1.10.1200.10 960 1021 5.1E-20 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:1.10.1200.10 1993 2063 1.9E-18 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF00975 Thioesterase domain 2078 2337 2.5E-32 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1617 1628 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Gene3D G3DSA:3.40.50.1820 2064 2342 1.2E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF52777 9 167 6.11E-25 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 ProSitePatterns PS00012 Phosphopantetheine attachment site. 980 995 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF47336 1982 2056 1.7E-17 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 SUPERFAMILY SSF52777 1227 1458 4.67E-35 T 29-03-2018 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF00501 AMP-binding enzyme 1481 1877 3.2E-80 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS14710 20d0de2bdb734a70b47503daebc2fa5d 2352 Pfam PF00501 AMP-binding enzyme 451 852 1.2E-101 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS19320 b966454d549e6cab990642e24a56ce38 334 Gene3D G3DSA:3.40.50.150 89 334 3.0E-39 T 29-03-2018 Y880_RS19320 b966454d549e6cab990642e24a56ce38 334 Pfam PF16864 Dimerisation domain 12 86 1.1E-6 T 29-03-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain Y880_RS19320 b966454d549e6cab990642e24a56ce38 334 SUPERFAMILY SSF53335 95 330 1.66E-39 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS19320 b966454d549e6cab990642e24a56ce38 334 Pfam PF00891 O-methyltransferase 100 316 5.4E-30 T 29-03-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 Y880_RS19320 b966454d549e6cab990642e24a56ce38 334 SUPERFAMILY SSF46785 10 89 5.99E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19320 b966454d549e6cab990642e24a56ce38 334 PIRSF PIRSF005739 1 332 1.4E-36 T 29-03-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 Y880_RS19320 b966454d549e6cab990642e24a56ce38 334 Gene3D G3DSA:1.10.10.10 1 88 2.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28470 ccc563b43c3b903f80a694132455a010 531 Pfam PF05199 GMC oxidoreductase 384 518 1.1E-21 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y880_RS28470 ccc563b43c3b903f80a694132455a010 531 SUPERFAMILY SSF51905 465 528 9.21E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28470 ccc563b43c3b903f80a694132455a010 531 SUPERFAMILY SSF51905 16 295 9.21E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28470 ccc563b43c3b903f80a694132455a010 531 Pfam PF00732 GMC oxidoreductase 32 296 1.7E-49 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS28470 ccc563b43c3b903f80a694132455a010 531 Gene3D G3DSA:3.50.50.60 14 531 6.5E-59 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 Pfam PF00005 ABC transporter 19 182 2.6E-22 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 Pfam PF00005 ABC transporter 334 467 5.8E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 Gene3D G3DSA:3.40.50.300 277 546 7.2E-58 T 29-03-2018 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 Pfam PF12848 ABC transporter 221 299 4.1E-10 T 29-03-2018 IPR032781 ABC-transporter extension domain Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 SMART SM00382 28 227 4.8E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 SMART SM00382 342 512 2.8E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 Gene3D G3DSA:3.90.20.10 547 640 1.1E-4 T 29-03-2018 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 Pfam PF16326 ABC transporter C-terminal domain 571 639 8.4E-19 T 29-03-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 SUPERFAMILY SSF52540 306 528 3.79E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 SUPERFAMILY SSF52540 3 94 2.88E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 SUPERFAMILY SSF52540 123 233 2.88E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13100 224611b7379e6940ba3c466067d27e7b 640 Gene3D G3DSA:3.40.50.300 1 276 2.4E-50 T 29-03-2018 Y880_RS16945 54029caa2f936d9ceb35701a7e186b61 166 SUPERFAMILY SSF141523 30 165 4.19E-24 T 29-03-2018 Y880_RS16945 54029caa2f936d9ceb35701a7e186b61 166 Gene3D G3DSA:2.40.440.10 24 165 1.7E-22 T 29-03-2018 Y880_RS16945 54029caa2f936d9ceb35701a7e186b61 166 Pfam PF03734 L,D-transpeptidase catalytic domain 31 164 1.3E-18 T 29-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Y880_RS07110 ad5de8231247c83071f7f04fde78fd13 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y880_RS07110 ad5de8231247c83071f7f04fde78fd13 387 Gene3D G3DSA:1.20.1090.10 189 387 8.4E-56 T 29-03-2018 Y880_RS07110 ad5de8231247c83071f7f04fde78fd13 387 Gene3D G3DSA:3.40.50.1970 14 187 7.3E-46 T 29-03-2018 Y880_RS07110 ad5de8231247c83071f7f04fde78fd13 387 SUPERFAMILY SSF56796 11 384 8.9E-119 T 29-03-2018 Y880_RS07110 ad5de8231247c83071f7f04fde78fd13 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 15 379 1.1E-115 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 Gene3D G3DSA:3.40.50.80 119 251 1.3E-26 T 29-03-2018 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 SUPERFAMILY SSF52343 108 250 3.67E-37 T 29-03-2018 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 SUPERFAMILY SSF63380 13 117 1.86E-29 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 290 359 1.5E-12 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 164 175 2.0E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 127 146 2.0E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 220 228 2.0E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 67 74 2.0E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 SUPERFAMILY SSF54292 243 365 2.1E-28 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 Pfam PF00175 Oxidoreductase NAD-binding domain 128 234 3.1E-14 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 Gene3D G3DSA:2.40.30.10 11 114 1.1E-24 T 29-03-2018 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 Gene3D G3DSA:3.10.20.30 252 366 1.6E-30 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 316 324 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00406 Cytochrome B5 reductase signature 220 228 4.4E-9 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00406 Cytochrome B5 reductase signature 127 146 4.4E-9 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00406 Cytochrome B5 reductase signature 164 175 4.4E-9 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00406 Cytochrome B5 reductase signature 104 118 4.4E-9 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 PRINTS PR00406 Cytochrome B5 reductase signature 67 74 4.4E-9 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y880_RS25705 12d7ec511310d80cdeaf5af304f8ad48 366 Pfam PF00970 Oxidoreductase FAD-binding domain 25 116 5.4E-17 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Y880_RS25170 378cbfdc589e0f148321eaf86704169b 387 Gene3D G3DSA:1.20.1250.20 193 380 8.0E-14 T 29-03-2018 Y880_RS25170 378cbfdc589e0f148321eaf86704169b 387 SUPERFAMILY SSF103473 3 369 5.89E-38 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS25170 378cbfdc589e0f148321eaf86704169b 387 Gene3D G3DSA:1.20.1250.20 1 181 2.7E-16 T 29-03-2018 Y880_RS25170 378cbfdc589e0f148321eaf86704169b 387 Pfam PF07690 Major Facilitator Superfamily 11 238 1.3E-14 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS01170 53239c734c6b92580bf673e4162968eb 126 Gene3D G3DSA:3.10.180.10 7 126 1.2E-28 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS01170 53239c734c6b92580bf673e4162968eb 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 122 2.8E-9 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS01170 53239c734c6b92580bf673e4162968eb 126 SUPERFAMILY SSF54593 1 124 2.69E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 Pfam PF08448 PAS fold 26 116 4.6E-7 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 Gene3D G3DSA:1.10.10.60 426 473 3.7E-15 T 29-03-2018 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 Gene3D G3DSA:3.30.450.20 5 118 4.2E-12 T 29-03-2018 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 SUPERFAMILY SSF55785 11 116 2.44E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 Pfam PF02954 Bacterial regulatory protein, Fis family 426 463 2.9E-12 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 369 378 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 8.5E-9 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 8.5E-9 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 Pfam PF00158 Sigma-54 interaction domain 159 326 2.6E-63 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 245 260 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 Gene3D G3DSA:3.40.50.300 153 331 1.0E-25 T 29-03-2018 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 Gene3D G3DSA:1.10.8.60 332 425 1.9E-17 T 29-03-2018 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 SUPERFAMILY SSF46689 369 468 5.38E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 SMART SM00091 19 86 0.0065 T 29-03-2018 IPR000014 PAS domain Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 SUPERFAMILY SSF52540 158 397 9.14E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 182 195 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS07180 38ef7f740882301e46f1a865f4019811 481 SMART SM00382 178 323 9.4E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 28 330 1.2E-151 T 29-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 SMART SM00382 55 182 7.4E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 Gene3D G3DSA:3.40.50.300 22 185 2.0E-24 T 29-03-2018 Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 Gene3D G3DSA:1.10.8.60 188 258 5.5E-33 T 29-03-2018 Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 14 239 8.9E-117 T 29-03-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 257 330 2.6E-33 T 29-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 SUPERFAMILY SSF46785 261 334 1.47E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 SUPERFAMILY SSF52540 24 255 1.84E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 352 182.798 T 29-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 254 337 1.0E-42 T 29-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Y880_RS01645 4aad00807a06f2186c0c7c086fb2e5df 352 Gene3D G3DSA:1.10.10.10 261 331 3.3E-33 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12725 f9e94de763646be1f88cd45d318d0b17 142 SUPERFAMILY SSF159664 4 134 8.76E-36 T 29-03-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Y880_RS12725 f9e94de763646be1f88cd45d318d0b17 142 Pfam PF01890 Cobalamin synthesis G C-terminus 9 133 2.6E-27 T 29-03-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Y880_RS12725 f9e94de763646be1f88cd45d318d0b17 142 Gene3D G3DSA:3.30.420.180 3 142 3.8E-35 T 29-03-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Y880_RS02155 c9fd75a3d4673a2c884c3a9599a111c6 255 SMART SM00382 30 231 2.0E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS02155 c9fd75a3d4673a2c884c3a9599a111c6 255 SUPERFAMILY SSF52540 4 253 2.24E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02155 c9fd75a3d4673a2c884c3a9599a111c6 255 Pfam PF00005 ABC transporter 22 181 5.4E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS02155 c9fd75a3d4673a2c884c3a9599a111c6 255 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS02155 c9fd75a3d4673a2c884c3a9599a111c6 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 253 1.9E-10 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y880_RS02155 c9fd75a3d4673a2c884c3a9599a111c6 255 Gene3D G3DSA:3.40.50.300 1 255 1.2E-57 T 29-03-2018 Y880_RS20610 29be98c92fe47efa1a9a02e79eb01bb8 241 Gene3D G3DSA:3.40.50.300 1 235 5.0E-59 T 29-03-2018 Y880_RS20610 29be98c92fe47efa1a9a02e79eb01bb8 241 Pfam PF00005 ABC transporter 20 166 3.6E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS20610 29be98c92fe47efa1a9a02e79eb01bb8 241 SUPERFAMILY SSF52540 4 235 1.93E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20610 29be98c92fe47efa1a9a02e79eb01bb8 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 3.5E-122 T 29-03-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 Y880_RS20610 29be98c92fe47efa1a9a02e79eb01bb8 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 6.3E-5 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y880_RS20610 29be98c92fe47efa1a9a02e79eb01bb8 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS20610 29be98c92fe47efa1a9a02e79eb01bb8 241 SMART SM00382 28 213 6.3E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS03130 e10f19142aad55dff192e6c32ecdf75f 481 Gene3D G3DSA:1.20.1600.10 19 436 1.6E-69 T 29-03-2018 Y880_RS03130 e10f19142aad55dff192e6c32ecdf75f 481 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 24 444 3.5E-144 T 29-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 Y880_RS03130 e10f19142aad55dff192e6c32ecdf75f 481 SUPERFAMILY SSF56954 26 440 1.96E-86 T 29-03-2018 Y880_RS03130 e10f19142aad55dff192e6c32ecdf75f 481 Pfam PF02321 Outer membrane efflux protein 247 430 2.5E-32 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS03130 e10f19142aad55dff192e6c32ecdf75f 481 Pfam PF02321 Outer membrane efflux protein 31 219 5.9E-25 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 SUPERFAMILY SSF52540 36 81 1.61E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 SUPERFAMILY SSF52540 457 581 1.61E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 664 0.0 T 29-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF02151 UvrB/uvrC motif 632 665 3.8E-9 T 29-03-2018 IPR001943 UVR domain GO:0005515 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 SMART SM00490 458 544 8.3E-19 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:4.10.860.10 607 670 9.6E-15 T 29-03-2018 IPR001943 UVR domain GO:0005515 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 666 43.739 T 29-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:3.40.50.300 414 587 7.1E-32 T 29-03-2018 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:3.40.50.300 230 413 4.3E-8 T 29-03-2018 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:3.40.50.300 9 195 1.6E-25 T 29-03-2018 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 SUPERFAMILY SSF46600 626 667 1.7E-11 T 29-03-2018 IPR001943 UVR domain GO:0005515 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 SMART SM00487 8 424 3.8E-30 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF00271 Helicase conserved C-terminal domain 435 542 4.6E-17 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF04851 Type III restriction enzyme, res subunit 11 118 5.8E-9 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 SUPERFAMILY SSF52540 2 413 9.98E-139 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13735 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF12344 Ultra-violet resistance protein B 550 592 2.1E-22 T 29-03-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 SUPERFAMILY SSF46626 55 78 3.1E-29 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 SUPERFAMILY SSF46626 111 207 3.1E-29 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 PIRSF PIRSF000006 1 305 6.0E-107 T 29-03-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 35 304 1.0E-79 T 29-03-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 SUPERFAMILY SSF46626 215 304 1.72E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 2.2E-23 T 29-03-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 Gene3D G3DSA:1.10.760.10 212 308 5.9E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 131 205 1.2E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 220 298 1.8E-12 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04800 1bce36d9f697a37d10d72f9dd140f5d0 308 Gene3D G3DSA:1.10.760.10 95 211 8.6E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.2E-60 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.12 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.7E-47 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 29-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 Gene3D G3DSA:3.90.1170.10 1 137 9.5E-48 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.4E-39 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.4E-39 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.4E-39 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.4E-39 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 SUPERFAMILY SSF54686 1 134 4.19E-53 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Y880_RS19540 eea4470f9113d11957d63cc6a572200f 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 29-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS18750 35693153179facb4c73ce331cb20498d 246 SMART SM00448 5 117 4.2E-41 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18750 35693153179facb4c73ce331cb20498d 246 SUPERFAMILY SSF46894 135 236 1.3E-23 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS18750 35693153179facb4c73ce331cb20498d 246 SUPERFAMILY SSF52172 6 133 4.41E-40 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS18750 35693153179facb4c73ce331cb20498d 246 Gene3D G3DSA:3.40.50.2300 6 134 1.4E-38 T 29-03-2018 Y880_RS18750 35693153179facb4c73ce331cb20498d 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 235 2.1E-21 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS18750 35693153179facb4c73ce331cb20498d 246 Pfam PF00072 Response regulator receiver domain 7 118 2.9E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18750 35693153179facb4c73ce331cb20498d 246 Gene3D G3DSA:1.10.10.10 135 240 3.7E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18750 35693153179facb4c73ce331cb20498d 246 SMART SM00862 159 235 9.0E-21 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS04085 aca3a076102564958345715f04e88f23 417 Pfam PF08447 PAS fold 142 227 1.6E-15 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS04085 aca3a076102564958345715f04e88f23 417 SUPERFAMILY SSF55785 129 231 3.49E-25 T 29-03-2018 IPR000014 PAS domain Y880_RS04085 aca3a076102564958345715f04e88f23 417 SMART SM00086 70 112 0.049 T 29-03-2018 IPR001610 PAC motif Y880_RS04085 aca3a076102564958345715f04e88f23 417 SMART SM00086 192 234 1.4E-7 T 29-03-2018 IPR001610 PAC motif Y880_RS04085 aca3a076102564958345715f04e88f23 417 SUPERFAMILY SSF55785 7 109 3.4E-26 T 29-03-2018 IPR000014 PAS domain Y880_RS04085 aca3a076102564958345715f04e88f23 417 SMART SM00283 223 417 3.0E-24 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS04085 aca3a076102564958345715f04e88f23 417 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 129 237 2.2E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS04085 aca3a076102564958345715f04e88f23 417 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 8 118 8.2E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS04085 aca3a076102564958345715f04e88f23 417 SUPERFAMILY SSF58104 225 412 9.29E-57 T 29-03-2018 Y880_RS04085 aca3a076102564958345715f04e88f23 417 SMART SM00091 3 65 2.3 T 29-03-2018 IPR000014 PAS domain Y880_RS04085 aca3a076102564958345715f04e88f23 417 SMART SM00091 117 186 9.5 T 29-03-2018 IPR000014 PAS domain Y880_RS04085 aca3a076102564958345715f04e88f23 417 Gene3D G3DSA:3.40.50.10600 1 111 5.4E-32 T 29-03-2018 Y880_RS04085 aca3a076102564958345715f04e88f23 417 Gene3D G3DSA:3.40.50.10600 112 235 2.8E-31 T 29-03-2018 Y880_RS04085 aca3a076102564958345715f04e88f23 417 Gene3D G3DSA:1.10.287.950 236 415 9.8E-47 T 29-03-2018 Y880_RS04085 aca3a076102564958345715f04e88f23 417 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 252 413 4.3E-41 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS04085 aca3a076102564958345715f04e88f23 417 Pfam PF13426 PAS domain 14 109 2.4E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS04085 aca3a076102564958345715f04e88f23 417 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 303 330 6.0E-19 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS04085 aca3a076102564958345715f04e88f23 417 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 332 361 6.0E-19 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SMART SM00388 513 579 7.4E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Gene3D G3DSA:3.30.565.10 583 742 4.4E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SUPERFAMILY SSF55874 570 734 3.93E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Gene3D G3DSA:3.30.450.20 217 330 7.5E-17 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Gene3D G3DSA:1.10.287.130 517 575 3.6E-10 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Pfam PF13188 PAS domain 228 262 0.014 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Pfam PF12860 PAS fold 113 213 2.7E-9 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Pfam PF12860 PAS fold 297 333 1.6E-8 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SUPERFAMILY SSF52172 756 877 5.41E-18 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SMART SM00091 107 174 29.0 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SMART SM00091 226 291 0.78 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SMART SM00091 341 407 38.0 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Pfam PF00072 Response regulator receiver domain 759 871 1.2E-10 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Pfam PF00512 His Kinase A (phospho-acceptor) domain 513 579 4.6E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SUPERFAMILY SSF47384 498 579 2.75E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Gene3D G3DSA:3.30.450.20 485 516 1.9E-4 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Pfam PF08448 PAS fold 348 456 4.1E-26 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SUPERFAMILY SSF55785 326 452 3.66E-21 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SUPERFAMILY SSF55785 101 207 3.49E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Gene3D G3DSA:3.40.50.2300 745 880 1.0E-17 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Gene3D G3DSA:3.30.450.20 331 482 2.1E-26 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SMART SM00448 757 871 2.8E-8 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SMART SM00387 623 734 2.1E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 SUPERFAMILY SSF55785 212 327 4.71E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 337 461 3.1E-10 T 29-03-2018 IPR000014 PAS domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 624 733 4.9E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 Gene3D G3DSA:3.30.450.20 86 216 1.0E-9 T 29-03-2018 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 712 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 731 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 677 687 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS07040 4ce52c879833309ca4bef010fb50fe0a 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 659 673 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18570 058fe8b409e6fdc59136785a169493cc 172 Pfam PF11736 Protein of unknown function (DUF3299) 30 165 2.0E-46 T 29-03-2018 IPR021727 Protein of unknown function DUF3299 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 SMART SM01134 72 232 2.3E-72 T 29-03-2018 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 Gene3D G3DSA:1.10.10.10 1 68 2.9E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 Gene3D G3DSA:3.40.50.1360 69 234 1.3E-40 T 29-03-2018 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 SMART SM00420 6 58 3.9E-22 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 SUPERFAMILY SSF100950 74 232 4.95E-31 T 29-03-2018 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 SUPERFAMILY SSF46785 3 68 2.46E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.9E-12 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.9E-12 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 Pfam PF00455 DeoR C terminal sensor domain 75 231 2.8E-53 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 5.0E-21 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS16060 26da6b4f0ec1b2dbc7986512057e689f 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Y880_RS01685 c3ddd7380fd391dc388f9d620b730fe7 264 Gene3D G3DSA:3.20.20.70 73 251 5.2E-16 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS01685 c3ddd7380fd391dc388f9d620b730fe7 264 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 54 264 6.3E-111 T 29-03-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Y880_RS01685 c3ddd7380fd391dc388f9d620b730fe7 264 PIRSF PIRSF000370 52 264 4.9E-67 T 29-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 Y880_RS01685 c3ddd7380fd391dc388f9d620b730fe7 264 Pfam PF13394 4Fe-4S single cluster domain 75 156 1.8E-10 T 29-03-2018 Y880_RS01685 c3ddd7380fd391dc388f9d620b730fe7 264 Pfam PF04055 Radical SAM superfamily 77 210 3.1E-15 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS01685 c3ddd7380fd391dc388f9d620b730fe7 264 SUPERFAMILY SSF102114 76 154 1.7E-14 T 29-03-2018 Y880_RS01685 c3ddd7380fd391dc388f9d620b730fe7 264 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 54 261 35.977 T 29-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 SUPERFAMILY SSF47446 329 433 8.99E-35 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 SMART SM00962 100 296 2.1E-115 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Gene3D G3DSA:1.10.260.30 328 435 3.4E-36 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Gene3D G3DSA:3.40.50.300 96 210 8.8E-11 T 29-03-2018 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 SMART SM00382 99 247 3.2E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Pfam PF02978 Signal peptide binding domain 329 430 1.4E-32 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.3E-21 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 432 8.4E-177 T 29-03-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Gene3D G3DSA:1.20.120.140 211 310 9.3E-33 T 29-03-2018 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 443 34.471 T 29-03-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 SMART SM00963 1 86 2.1E-35 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Gene3D G3DSA:1.20.120.140 1 91 1.3E-29 T 29-03-2018 Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 SUPERFAMILY SSF52540 42 354 5.75E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16890 1c23eb3808670651d8b3d1f08ba9f529 457 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 3.4E-74 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS02975 9dfd9a11f84565c37610529fc261c1e1 292 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 7 197 9.6E-31 T 29-03-2018 IPR008775 Phytanoyl-CoA dioxygenase Y880_RS02975 9dfd9a11f84565c37610529fc261c1e1 292 Gene3D G3DSA:2.60.120.620 3 225 4.7E-22 T 29-03-2018 Y880_RS02975 9dfd9a11f84565c37610529fc261c1e1 292 SUPERFAMILY SSF51197 5 215 5.4E-27 T 29-03-2018 Y880_RS20555 e8ce8d0217dc95389f1892fc4e4ae7ca 421 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 5.2E-178 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20555 e8ce8d0217dc95389f1892fc4e4ae7ca 421 SUPERFAMILY SSF55205 1 419 2.78E-142 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y880_RS20555 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Gene3D G3DSA:3.65.10.10 21 222 1.9E-48 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y880_RS20555 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 45.313 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20555 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 409 3.9E-119 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y880_RS20555 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Gene3D G3DSA:3.65.10.10 223 421 1.6E-43 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y880_RS01200 3654e84db9895a91c4471f1de5ba2b7e 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 1.0E-148 T 29-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 Y880_RS01200 3654e84db9895a91c4471f1de5ba2b7e 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 415 4.0E-124 T 29-03-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y880_RS01200 3654e84db9895a91c4471f1de5ba2b7e 427 PIRSF PIRSF006066 1 427 5.1E-156 T 29-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 SUPERFAMILY SSF56176 367 445 7.09E-15 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 Gene3D G3DSA:3.10.580.10 212 360 1.3E-32 T 29-03-2018 Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 SMART SM01091 368 446 2.7E-16 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 SUPERFAMILY SSF54631 224 363 2.4E-27 T 29-03-2018 Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 Gene3D G3DSA:3.30.465.10 361 446 6.5E-17 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 Pfam PF00571 CBS domain 304 353 7.8E-6 T 29-03-2018 IPR000644 CBS domain Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 Pfam PF00571 CBS domain 237 288 9.1E-8 T 29-03-2018 IPR000644 CBS domain Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 SMART SM00116 239 288 1.6E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 SMART SM00116 305 353 0.1 T 29-03-2018 IPR000644 CBS domain Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 Pfam PF03471 Transporter associated domain 372 444 8.9E-17 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS25435 22d459e575a24d58ebda4e106409c6a8 446 Pfam PF01595 Domain of unknown function DUF21 21 209 6.0E-51 T 29-03-2018 IPR002550 Domain of unknown function DUF21 Y880_RS08135 27cef896df15c5a915f4e8a295f31575 316 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 206 212 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS08135 27cef896df15c5a915f4e8a295f31575 316 SUPERFAMILY SSF53335 82 274 2.99E-30 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS08135 27cef896df15c5a915f4e8a295f31575 316 Gene3D G3DSA:3.40.50.150 99 292 1.5E-24 T 29-03-2018 Y880_RS08135 27cef896df15c5a915f4e8a295f31575 316 Pfam PF05175 Methyltransferase small domain 131 252 7.7E-16 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 SUPERFAMILY SSF50182 916 981 4.58E-17 T 29-03-2018 IPR010920 LSM domain Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 Gene3D G3DSA:3.30.70.100 983 1077 6.8E-17 T 29-03-2018 Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 SUPERFAMILY SSF82689 983 1083 3.79E-21 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 Pfam PF00924 Mechanosensitive ion channel 873 1071 1.4E-51 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 Gene3D G3DSA:2.30.30.60 932 982 9.3E-13 T 29-03-2018 Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 945 979 - T 29-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 Pfam PF12795 Mechanosensitive ion channel porin domain 38 273 8.9E-56 T 29-03-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 SUPERFAMILY SSF82861 830 914 2.22E-7 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y880_RS23665 5caed29338a98a5745bfa7a241d08bcf 1118 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 493 812 1.7E-105 T 29-03-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 SUPERFAMILY SSF51735 7 250 5.56E-66 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 Gene3D G3DSA:3.40.50.720 1 252 1.6E-58 T 29-03-2018 Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 9.0E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 9.0E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 9.0E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 2.2E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 2.2E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.2E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.2E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.2E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 2.2E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS09925 dcfb5655ee4654bc5269e8888c015613 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 250 3.8E-48 T 29-03-2018 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 1.9E-224 T 29-03-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Gene3D G3DSA:3.90.180.10 1 188 2.0E-61 T 29-03-2018 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 155 2.9E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SUPERFAMILY SSF50129 320 370 5.18E-11 T 29-03-2018 IPR011032 GroES-like Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Gene3D G3DSA:3.90.180.10 307 370 2.9E-5 T 29-03-2018 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SMART SM00829 11 368 2.3E-4 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SUPERFAMILY SSF50129 2 185 1.08E-72 T 29-03-2018 IPR011032 GroES-like Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Gene3D G3DSA:3.40.50.720 189 306 3.1E-26 T 29-03-2018 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Pfam PF00107 Zinc-binding dehydrogenase 198 325 5.4E-27 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS16300 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SUPERFAMILY SSF51735 161 334 8.0E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 4 806 101.231 T 29-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 SMART SM00433 37 799 7.5E-272 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 SUPERFAMILY SSF55874 7 219 5.24E-75 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 SMART SM00387 33 177 2.5E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 SUPERFAMILY SSF54211 222 394 2.85E-57 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 314 330 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 197 210 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 221 243 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 182 197 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 362 376 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 759 771 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 775 791 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 244 262 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 376 396 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 7 17 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 472 481 1.8E-83 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.40.50.670 403 803 3.2E-109 T 29-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 7 806 6.3E-303 T 29-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 175 1.6E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 734 795 2.8E-30 T 29-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF01751 Toprim domain 421 533 1.1E-17 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 ProSitePatterns PS00177 DNA topoisomerase II signature. 424 432 - T 29-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF00204 DNA gyrase B 222 392 6.5E-57 T 29-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.30.230.10 226 394 5.5E-61 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.30.565.10 2 225 1.1E-74 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 72 85 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 489 505 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 527 539 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 115 129 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 270 283 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 738 754 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 422 436 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 37 52 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 507 524 9.7E-72 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 SUPERFAMILY SSF56719 732 796 2.59E-88 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y880_RS26605 198f6ef710d4f6a9fa96d428c423bf4c 806 SUPERFAMILY SSF56719 396 562 2.59E-88 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y880_RS09755 3d79c3a9a46a4180d40739e51ac42701 333 Pfam PF00296 Luciferase-like monooxygenase 24 306 6.3E-39 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS09755 3d79c3a9a46a4180d40739e51ac42701 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 328 3.9E-130 T 29-03-2018 IPR019949 Luciferase family oxidoreductase, group 1 Y880_RS09755 3d79c3a9a46a4180d40739e51ac42701 333 SUPERFAMILY SSF51679 7 328 2.88E-85 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS09755 3d79c3a9a46a4180d40739e51ac42701 333 Gene3D G3DSA:3.20.20.30 13 330 6.0E-73 T 29-03-2018 Y880_RS11605 3da66da9afd078b74ab996f33d91ce2f 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 119 195 1.9E-7 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS11605 3da66da9afd078b74ab996f33d91ce2f 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 1.9E-15 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS11605 3da66da9afd078b74ab996f33d91ce2f 206 Gene3D G3DSA:1.20.1050.10 91 204 2.9E-27 T 29-03-2018 Y880_RS11605 3da66da9afd078b74ab996f33d91ce2f 206 SUPERFAMILY SSF52833 1 85 9.49E-25 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS11605 3da66da9afd078b74ab996f33d91ce2f 206 Gene3D G3DSA:3.40.30.10 1 90 1.1E-29 T 29-03-2018 Y880_RS11605 3da66da9afd078b74ab996f33d91ce2f 206 SUPERFAMILY SSF47616 80 201 1.81E-31 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 Gene3D G3DSA:3.40.50.20 12 93 2.3E-27 T 29-03-2018 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 19 315 35.054 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 Gene3D G3DSA:3.30.470.20 181 318 1.4E-38 T 29-03-2018 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 20 313 4.8E-110 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 SUPERFAMILY SSF56059 113 312 5.48E-59 T 29-03-2018 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 SUPERFAMILY SSF52440 20 112 5.08E-30 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 PIRSF PIRSF039102 59 318 5.8E-83 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 PIRSF PIRSF039102 17 65 3.7E-8 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 257 285 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 Pfam PF01820 D-ala D-ala ligase N-terminus 20 102 3.1E-18 T 29-03-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 Gene3D G3DSA:3.30.1490.20 94 180 8.0E-31 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 Pfam PF07478 D-ala D-ala ligase C-terminus 120 311 2.4E-56 T 29-03-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20350 87a7f4bab32128f75d0cb30f439bda41 319 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 79 90 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS00065 60342a2823909f031c737514b26f581e 124 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 1.8E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00065 60342a2823909f031c737514b26f581e 124 Gene3D G3DSA:3.30.1300.30 34 124 3.0E-18 T 29-03-2018 Y880_RS00065 60342a2823909f031c737514b26f581e 124 Pfam PF02501 Type II secretion system (T2SS), protein I 43 120 7.8E-19 T 29-03-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 Y880_RS00065 60342a2823909f031c737514b26f581e 124 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00065 60342a2823909f031c737514b26f581e 124 SUPERFAMILY SSF54523 41 120 1.67E-13 T 29-03-2018 Y880_RS00065 60342a2823909f031c737514b26f581e 124 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 3.6E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00065 60342a2823909f031c737514b26f581e 124 TIGRFAM TIGR01707 gspI: type II secretion system protein I 9 107 2.5E-36 T 29-03-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 Pfam PF00765 Autoinducer synthase 12 185 1.0E-29 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 ProSitePatterns PS00949 Autoinducer synthase family signature. 22 47 - T 29-03-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 6.2E-16 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 18 37 6.2E-16 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 142 163 6.2E-16 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 64 82 6.2E-16 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 Gene3D G3DSA:3.40.630.30 1 199 5.9E-32 T 29-03-2018 Y880_RS04130 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 SUPERFAMILY SSF55729 7 191 1.11E-34 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS23105 6116f0217437527843f4c7cb169005e1 219 SUPERFAMILY SSF52499 8 201 2.09E-30 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS23105 6116f0217437527843f4c7cb169005e1 219 Pfam PF00857 Isochorismatase family 11 202 2.8E-21 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS23105 6116f0217437527843f4c7cb169005e1 219 Gene3D G3DSA:3.40.50.850 2 219 1.8E-34 T 29-03-2018 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 314 325 - T 29-03-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 SUPERFAMILY SSF53335 135 431 7.0E-72 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 430 1.1E-128 T 29-03-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 Pfam PF01189 16S rRNA methyltransferase RsmB/F 238 428 1.6E-62 T 29-03-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 Gene3D G3DSA:1.10.287.730 143 169 4.4E-10 T 29-03-2018 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 SUPERFAMILY SSF48013 1 146 4.45E-35 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 Pfam PF01029 NusB family 1 123 2.0E-21 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 1.6E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 365 381 1.6E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 1.6E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 413 430 1.6E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 315 327 1.6E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 Gene3D G3DSA:3.40.50.150 228 434 2.3E-53 T 29-03-2018 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 Gene3D G3DSA:3.30.70.1170 170 227 2.5E-19 T 29-03-2018 Y880_RS26670 aac8b2a44067133d4f9f524e9402799f 434 Gene3D G3DSA:1.10.940.10 1 142 5.5E-30 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y880_RS21255 07037d3f0eb7ea4e52c5d0401d65e82c 404 SUPERFAMILY SSF103365 7 404 1.7E-141 T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS21255 07037d3f0eb7ea4e52c5d0401d65e82c 404 Pfam PF01139 tRNA-splicing ligase RtcB 31 404 3.4E-134 T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS21255 07037d3f0eb7ea4e52c5d0401d65e82c 404 ProSitePatterns PS01288 Uncharacterized protein family UPF0027 signature. 31 60 - T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82693 142 187 3.92E-15 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82693 273 328 3.92E-15 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82714 710 795 4.58E-13 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 PRINTS PR00702 Acriflavin resistance protein family signature 43 61 9.3E-18 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 9.3E-18 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 9.3E-18 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 9.3E-18 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 9.3E-18 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 Gene3D G3DSA:1.20.1640.10 299 503 3.3E-34 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 Gene3D G3DSA:3.30.2090.10 709 796 1.2E-13 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 Gene3D G3DSA:3.30.70.1430 45 149 1.0E-23 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 Gene3D G3DSA:3.30.70.1430 558 660 1.1E-14 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 Gene3D G3DSA:3.30.2090.10 186 272 5.1E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82714 190 271 5.1E-13 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 Gene3D G3DSA:1.20.1640.10 822 1014 4.4E-32 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82866 795 1016 3.66E-41 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 Pfam PF00873 AcrB/AcrD/AcrF family 9 1011 1.5E-146 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82693 557 645 4.71E-6 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82693 45 139 1.22E-14 T 29-03-2018 Y880_RS03775 af3e19f183dc3a6078f7381fc51ccfc3 1029 SUPERFAMILY SSF82866 298 493 1.1E-36 T 29-03-2018 Y880_RS01550 092226fc64ef7a8cca956cdc3c0b9d4a 198 ProSitePatterns PS00201 Flavodoxin signature. 8 24 - T 29-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Y880_RS01550 092226fc64ef7a8cca956cdc3c0b9d4a 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 6 196 5.2E-45 T 29-03-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 Y880_RS01550 092226fc64ef7a8cca956cdc3c0b9d4a 198 SUPERFAMILY SSF52218 4 196 3.01E-64 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS01550 092226fc64ef7a8cca956cdc3c0b9d4a 198 Gene3D G3DSA:3.40.50.360 2 198 5.0E-42 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS01550 092226fc64ef7a8cca956cdc3c0b9d4a 198 Pfam PF03358 NADPH-dependent FMN reductase 13 141 4.0E-9 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y880_RS01550 092226fc64ef7a8cca956cdc3c0b9d4a 198 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 3 198 32.831 T 29-03-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 SUPERFAMILY SSF51306 82 203 6.8E-36 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 117 127 1.9E-12 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 128 139 1.9E-12 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 156 168 1.9E-12 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 Pfam PF01726 LexA DNA binding domain 1 65 1.9E-31 T 29-03-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 TIGRFAM TIGR00498 lexA: repressor LexA 1 204 6.5E-75 T 29-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 Hamap MF_00015 LexA repressor [lexA]. 3 204 32.413 T 29-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 Pfam PF00717 Peptidase S24-like 120 186 1.0E-14 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 Gene3D G3DSA:2.10.109.10 86 204 5.7E-25 T 29-03-2018 Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 SUPERFAMILY SSF46785 3 70 1.7E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13035 f2ebaeb68fa7576cf01473b7f957f178 204 Gene3D G3DSA:1.10.10.10 1 69 4.2E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26995 a5b652085636e8e198c47a1e91c6a9a6 1177 SUPERFAMILY SSF52540 125 294 1.42E-11 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26995 a5b652085636e8e198c47a1e91c6a9a6 1177 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 15 1175 0.0 T 29-03-2018 IPR017731 Type VI secretion system, IcmF Y880_RS26995 a5b652085636e8e198c47a1e91c6a9a6 1177 Pfam PF14331 ImcF-related N-terminal domain 195 452 1.6E-99 T 29-03-2018 IPR025743 ImcF-related, N-terminal domain Y880_RS26995 a5b652085636e8e198c47a1e91c6a9a6 1177 Pfam PF06744 Type VI secretion protein IcmF C-terminal 925 1125 3.2E-69 T 29-03-2018 IPR010623 Type VI secretion system IcmF, C-terminal Y880_RS26995 a5b652085636e8e198c47a1e91c6a9a6 1177 Gene3D G3DSA:3.40.50.300 72 338 1.3E-7 T 29-03-2018 Y880_RS26995 a5b652085636e8e198c47a1e91c6a9a6 1177 Pfam PF06761 Intracellular multiplication and human macrophage-killing 504 797 3.0E-86 T 29-03-2018 IPR009612 ImcF-related Y880_RS13990 f841c0375159c95063d06de619888c9b 608 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 505 516 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS13990 f841c0375159c95063d06de619888c9b 608 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 2 601 0.0 T 29-03-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 Y880_RS13990 f841c0375159c95063d06de619888c9b 608 Pfam PF00920 Dehydratase family 66 597 4.9E-162 T 29-03-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS13990 f841c0375159c95063d06de619888c9b 608 SUPERFAMILY SSF143975 1 418 6.93E-148 T 29-03-2018 Y880_RS13990 f841c0375159c95063d06de619888c9b 608 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS13990 f841c0375159c95063d06de619888c9b 608 SUPERFAMILY SSF52016 419 600 8.63E-58 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 ProSitePatterns PS00683 Rhodanese C-terminal signature. 251 261 - T 29-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 SMART SM00450 11 126 4.9E-17 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 SMART SM00450 149 267 5.0E-22 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 ProSitePatterns PS00380 Rhodanese signature 1. 36 47 - T 29-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 SUPERFAMILY SSF52821 145 270 2.62E-29 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 SUPERFAMILY SSF52821 3 132 2.1E-31 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 Gene3D G3DSA:3.40.250.10 142 271 3.5E-25 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 Gene3D G3DSA:3.40.250.10 2 141 1.0E-23 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 Pfam PF00581 Rhodanese-like domain 151 263 1.3E-16 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS23305 62a55a8ea15bef9153641305b15215f4 271 Pfam PF00581 Rhodanese-like domain 13 122 1.1E-13 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 Pfam PF12833 Helix-turn-helix domain 221 298 2.7E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 2.0E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 2.0E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 SUPERFAMILY SSF46689 201 246 1.97E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 SMART SM00342 215 297 3.8E-27 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 Gene3D G3DSA:2.60.120.280 13 183 2.8E-11 T 29-03-2018 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 Gene3D G3DSA:1.10.10.60 192 252 3.2E-10 T 29-03-2018 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 SUPERFAMILY SSF46689 251 299 1.97E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 Gene3D G3DSA:1.10.10.60 253 301 5.2E-15 T 29-03-2018 Y880_RS09005 19292a3ea69ed996a0a0b53fdc2d8513 301 Pfam PF12852 Cupin 11 182 1.9E-30 T 29-03-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain Y880_RS29790 19ad2f9a00c010cc315f33761a05f303 185 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 8 185 4.7E-57 T 29-03-2018 IPR013046 Phage baseplate assembly protein V/Gp45 Y880_RS29790 19ad2f9a00c010cc315f33761a05f303 185 Pfam PF04717 Type VI secretion system, phage-baseplate injector 6 116 2.4E-44 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS07935 a0701254dc2c49035673307863770362 812 Gene3D G3DSA:3.40.50.2000 4 478 7.6E-187 T 29-03-2018 Y880_RS07935 a0701254dc2c49035673307863770362 812 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 656 668 - T 29-03-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y880_RS07935 a0701254dc2c49035673307863770362 812 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 13 812 0.0 T 29-03-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y880_RS07935 a0701254dc2c49035673307863770362 812 PIRSF PIRSF000460 3 812 3.1E-216 T 29-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y880_RS07935 a0701254dc2c49035673307863770362 812 SUPERFAMILY SSF53756 11 811 6.99E-301 T 29-03-2018 Y880_RS07935 a0701254dc2c49035673307863770362 812 Pfam PF00343 Carbohydrate phosphorylase 100 812 3.3E-296 T 29-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y880_RS07935 a0701254dc2c49035673307863770362 812 Gene3D G3DSA:3.40.50.2000 479 797 4.9E-115 T 29-03-2018 Y880_RS03635 b9d4383a4fe3424a1b4fe56b6e23d696 529 Gene3D G3DSA:3.40.50.20 209 330 3.7E-19 T 29-03-2018 Y880_RS03635 b9d4383a4fe3424a1b4fe56b6e23d696 529 SUPERFAMILY SSF56059 306 514 7.07E-35 T 29-03-2018 Y880_RS03635 b9d4383a4fe3424a1b4fe56b6e23d696 529 Gene3D G3DSA:3.30.470.20 386 499 1.8E-23 T 29-03-2018 Y880_RS03635 b9d4383a4fe3424a1b4fe56b6e23d696 529 Gene3D G3DSA:3.30.1490.20 337 385 3.5E-11 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS03635 b9d4383a4fe3424a1b4fe56b6e23d696 529 Pfam PF08443 RimK-like ATP-grasp domain 316 492 3.1E-5 T 29-03-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y880_RS03635 b9d4383a4fe3424a1b4fe56b6e23d696 529 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 56 206 2.3E-44 T 29-03-2018 IPR025839 RimK-like ATPgrasp N-terminal domain Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 Gene3D G3DSA:3.20.20.450 289 542 6.9E-97 T 29-03-2018 IPR001633 EAL domain Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 Gene3D G3DSA:3.30.70.270 118 288 7.9E-45 T 29-03-2018 Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 SUPERFAMILY SSF55073 129 284 1.65E-36 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 SUPERFAMILY SSF141868 298 543 1.18E-87 T 29-03-2018 IPR001633 EAL domain Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 Pfam PF00563 EAL domain 298 533 2.4E-73 T 29-03-2018 IPR001633 EAL domain Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 120 275 7.1E-20 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 Pfam PF00990 Diguanylate cyclase, GGDEF domain 124 274 5.1E-32 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 SMART SM00267 113 282 9.8E-39 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25090 2b5f3ac96193cb62ec75c46efc310d57 558 SMART SM00052 292 538 7.1E-110 T 29-03-2018 IPR001633 EAL domain Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 Pfam PF02272 DHHA1 domain 732 870 1.9E-27 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 208.934 T 29-03-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 Gene3D G3DSA:3.30.980.10 551 712 5.5E-45 T 29-03-2018 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 SUPERFAMILY SSF55186 550 706 7.59E-52 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 SUPERFAMILY SSF50447 452 550 1.24E-19 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 SUPERFAMILY SSF101353 254 452 6.02E-63 T 29-03-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 4.1E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 4.1E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 4.1E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 4.1E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 4.1E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 Gene3D G3DSA:3.30.930.10 1 250 2.3E-115 T 29-03-2018 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 695 4.3E-19 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 853 0.0 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 SMART SM00863 651 695 8.2E-23 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 SUPERFAMILY SSF55681 2 253 1.09E-106 T 29-03-2018 Y880_RS01285 933e8269464f90f2d96e0b739de38a64 874 Pfam PF01411 tRNA synthetases class II (A) 5 552 1.8E-228 T 29-03-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Pfam PF03952 Enolase, N-terminal domain 4 134 3.1E-58 T 29-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SUPERFAMILY SSF54826 3 138 1.69E-56 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SMART SM01193 4 134 2.0E-92 T 29-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 367 384 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 338 352 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 315 326 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 ProSitePatterns PS00164 Enolase signature. 338 351 - T 29-03-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PIRSF PIRSF001400 1 429 2.1E-192 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Gene3D G3DSA:3.30.390.10 3 127 5.0E-52 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 1.7E-205 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SUPERFAMILY SSF51604 143 427 3.14E-129 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 426 1.9E-137 T 29-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Gene3D G3DSA:3.20.20.120 128 428 1.4E-105 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SMART SM01192 143 429 1.2E-221 T 29-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS16330 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Hamap MF_00318 Enolase [eno]. 2 415 44.578 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS18975 5519d6b3b66447d1e6e47b0f092bf926 471 Gene3D G3DSA:1.20.1600.10 53 466 7.5E-79 T 29-03-2018 Y880_RS18975 5519d6b3b66447d1e6e47b0f092bf926 471 PIRSF PIRSF001892 1 471 1.2E-165 T 29-03-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 Y880_RS18975 5519d6b3b66447d1e6e47b0f092bf926 471 SUPERFAMILY SSF56954 50 465 1.7E-83 T 29-03-2018 Y880_RS18975 5519d6b3b66447d1e6e47b0f092bf926 471 Pfam PF02321 Outer membrane efflux protein 276 463 2.1E-25 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS18975 5519d6b3b66447d1e6e47b0f092bf926 471 Pfam PF02321 Outer membrane efflux protein 58 241 6.2E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 Gene3D G3DSA:1.20.1560.10 10 342 3.3E-66 T 29-03-2018 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 SUPERFAMILY SSF90123 18 338 3.4E-71 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 SMART SM00382 382 575 4.2E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 Gene3D G3DSA:3.40.50.300 343 598 1.1E-76 T 29-03-2018 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 Pfam PF00664 ABC transporter transmembrane region 31 306 1.6E-48 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 Pfam PF00005 ABC transporter 373 523 1.5E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 15 595 1.3E-256 T 29-03-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 Y880_RS23525 ecd7c788ff079322708d86b957c4de56 603 SUPERFAMILY SSF52540 346 591 1.33E-94 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 SUPERFAMILY SSF51395 2 320 7.66E-76 T 29-03-2018 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 Gene3D G3DSA:3.30.70.20 356 384 7.8E-7 T 29-03-2018 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 5 320 7.6E-50 T 29-03-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 Gene3D G3DSA:3.30.70.20 385 419 0.0043 T 29-03-2018 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 383 394 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 SUPERFAMILY SSF54862 318 402 3.52E-13 T 29-03-2018 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 Pfam PF14697 4Fe-4S dicluster domain 339 401 3.9E-22 T 29-03-2018 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 Pfam PF01180 Dihydroorotate dehydrogenase 5 306 1.4E-27 T 29-03-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 Gene3D G3DSA:3.30.70.20 331 355 0.0012 T 29-03-2018 Y880_RS28870 2285d338f810e0d0ba586730491c41a8 425 Gene3D G3DSA:3.20.20.70 2 330 4.9E-53 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 97 103 - T 29-03-2018 IPR014762 DNA mismatch repair, conserved site Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 Pfam PF08676 MutL C terminal dimerisation domain 442 589 2.0E-51 T 29-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 5 629 29.851 T 29-03-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 218 333 1.4E-40 T 29-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 126 7.1E-9 T 29-03-2018 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 Gene3D G3DSA:3.30.565.10 10 202 1.1E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 6 314 3.3E-100 T 29-03-2018 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 Gene3D G3DSA:3.30.230.10 221 333 4.7E-31 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 SMART SM01340 216 334 8.4E-63 T 29-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 SUPERFAMILY SSF54211 195 334 8.34E-41 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 SUPERFAMILY SSF118116 442 631 2.62E-62 T 29-03-2018 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 SMART SM00853 446 589 4.9E-57 T 29-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Y880_RS23255 007c677df118c5d8eec1fa9febef5be3 633 SUPERFAMILY SSF55874 5 206 1.83E-54 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS15965 6fe954abc568de89257e313c44382013 628 Pfam PF00501 AMP-binding enzyme 64 500 4.9E-85 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS15965 6fe954abc568de89257e313c44382013 628 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS15965 6fe954abc568de89257e313c44382013 628 SUPERFAMILY SSF56801 3 623 3.66E-156 T 29-03-2018 Y880_RS15965 6fe954abc568de89257e313c44382013 628 Gene3D G3DSA:2.30.38.10 403 493 2.2E-14 T 29-03-2018 Y880_RS15965 6fe954abc568de89257e313c44382013 628 Gene3D G3DSA:3.40.50.980 242 402 4.5E-38 T 29-03-2018 Y880_RS15965 6fe954abc568de89257e313c44382013 628 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 56 3.4E-13 T 29-03-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y880_RS15965 6fe954abc568de89257e313c44382013 628 Gene3D G3DSA:3.40.50.980 50 241 4.1E-41 T 29-03-2018 Y880_RS15965 6fe954abc568de89257e313c44382013 628 Gene3D G3DSA:3.30.300.30 494 604 1.2E-25 T 29-03-2018 Y880_RS15965 6fe954abc568de89257e313c44382013 628 Pfam PF13193 AMP-binding enzyme C-terminal domain 509 588 9.2E-25 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS09725 b8d35d14929019f2dcd6064b4363383a 278 Gene3D G3DSA:3.40.30.10 130 275 6.4E-26 T 29-03-2018 Y880_RS09725 b8d35d14929019f2dcd6064b4363383a 278 Pfam PF00578 AhpC/TSA family 133 244 6.3E-15 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS09725 b8d35d14929019f2dcd6064b4363383a 278 ProSitePatterns PS00194 Thioredoxin family active site. 160 178 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS09725 b8d35d14929019f2dcd6064b4363383a 278 SUPERFAMILY SSF52833 105 264 8.5E-33 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 SUPERFAMILY SSF56037 337 434 1.15E-18 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 24 203 7.0E-52 T 29-03-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 Pfam PF01171 PP-loop family 23 199 6.3E-59 T 29-03-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 Pfam PF11734 TilS substrate C-terminal domain 364 432 1.4E-16 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 SMART SM00977 364 432 2.1E-19 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 SUPERFAMILY SSF52402 17 232 1.12E-61 T 29-03-2018 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 364 409 2.1E-14 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 7 396 23.098 T 29-03-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 Pfam PF09179 TilS substrate binding domain 260 323 2.6E-13 T 29-03-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 Gene3D G3DSA:3.40.50.620 17 227 1.1E-41 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS16345 ee62baea1d82fef1dc552c2f07e4342b 442 SUPERFAMILY SSF82829 248 328 3.4E-17 T 29-03-2018 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 Pfam PF13186 Iron-sulfur cluster-binding domain 249 314 1.0E-7 T 29-03-2018 IPR023885 4Fe4S-binding SPASM domain Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 PIRSF PIRSF037420 2 361 2.6E-128 T 29-03-2018 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 381 197.953 T 29-03-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 Pfam PF13353 4Fe-4S single cluster domain 23 106 2.4E-6 T 29-03-2018 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 SUPERFAMILY SSF102114 14 323 7.46E-76 T 29-03-2018 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 257 341 1.9E-8 T 29-03-2018 IPR023885 4Fe4S-binding SPASM domain Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 11 371 5.5E-189 T 29-03-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 Gene3D G3DSA:3.20.20.70 14 319 3.6E-47 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 Pfam PF04055 Radical SAM superfamily 22 177 1.4E-22 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 SMART SM00729 16 219 8.5E-5 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS07100 74ae3cde34b21aa090ee3a5d5b007dd1 381 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 22 33 - T 29-03-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 Reactome: R-HSA-947581 Y880_RS24790 836ed7cb8092d1f20e87c4e0dbf92e44 488 SUPERFAMILY SSF143968 323 487 2.35E-66 T 29-03-2018 Y880_RS24790 836ed7cb8092d1f20e87c4e0dbf92e44 488 SUPERFAMILY SSF50475 3 322 5.1E-126 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS24790 836ed7cb8092d1f20e87c4e0dbf92e44 488 Gene3D G3DSA:1.20.5.570 460 487 2.3E-17 T 29-03-2018 Y880_RS24790 836ed7cb8092d1f20e87c4e0dbf92e44 488 Gene3D G3DSA:3.40.1670.10 323 459 8.8E-52 T 29-03-2018 Y880_RS24790 836ed7cb8092d1f20e87c4e0dbf92e44 488 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 2.9E-171 T 29-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y880_RS24790 836ed7cb8092d1f20e87c4e0dbf92e44 488 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 71.999 T 29-03-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y880_RS24790 836ed7cb8092d1f20e87c4e0dbf92e44 488 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 431 3.5E-174 T 29-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 SUPERFAMILY SSF54909 65 154 3.08E-21 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 1.0E-13 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 1.0E-13 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 1.0E-13 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 SUPERFAMILY SSF46785 5 93 4.01E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 5.2E-21 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 Gene3D G3DSA:1.10.10.10 6 57 5.4E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 6.6E-19 T 29-03-2018 Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 Gene3D G3DSA:3.30.70.920 58 155 2.0E-26 T 29-03-2018 Y880_RS07300 3271dee226a769b19d9c482c099f9532 157 SMART SM00344 5 114 3.7E-38 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS19040 24b6d0c0a7c04bb7da17eda0d85918cb 262 Pfam PF01614 Bacterial transcriptional regulator 135 235 2.3E-7 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS19040 24b6d0c0a7c04bb7da17eda0d85918cb 262 Gene3D G3DSA:1.10.10.10 11 76 1.2E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19040 24b6d0c0a7c04bb7da17eda0d85918cb 262 SUPERFAMILY SSF55781 71 228 5.43E-21 T 29-03-2018 IPR029016 GAF domain-like Y880_RS19040 24b6d0c0a7c04bb7da17eda0d85918cb 262 SMART SM00346 13 103 2.6E-17 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS19040 24b6d0c0a7c04bb7da17eda0d85918cb 262 Gene3D G3DSA:3.30.450.40 81 246 1.0E-21 T 29-03-2018 IPR029016 GAF domain-like Y880_RS19040 24b6d0c0a7c04bb7da17eda0d85918cb 262 SUPERFAMILY SSF46785 13 87 3.56E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19040 24b6d0c0a7c04bb7da17eda0d85918cb 262 Pfam PF09339 IclR helix-turn-helix domain 15 66 6.1E-15 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS06805 384f017b3a722b494ddcd7b9400ec557 189 Pfam PF13302 Acetyltransferase (GNAT) domain 17 161 5.8E-18 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS06805 384f017b3a722b494ddcd7b9400ec557 189 SUPERFAMILY SSF55729 12 184 7.78E-39 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS06805 384f017b3a722b494ddcd7b9400ec557 189 Gene3D G3DSA:3.40.630.30 4 187 8.7E-25 T 29-03-2018 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 Gene3D G3DSA:1.10.10.60 1 38 3.9E-16 T 29-03-2018 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 SUPERFAMILY SSF46689 3 86 4.24E-21 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.7E-16 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 Gene3D G3DSA:1.10.260.40 39 67 6.0E-12 T 29-03-2018 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 6.0E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 6.0E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 Gene3D G3DSA:1.10.357.10 68 193 2.2E-14 T 29-03-2018 Y880_RS08690 5dfd90304a8517b6ea8cf42de649296b 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 SUPERFAMILY SSF158472 172 225 3.14E-7 T 29-03-2018 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 Pfam PF00512 His Kinase A (phospho-acceptor) domain 227 290 4.4E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 3.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 3.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 438 3.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 3.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 SUPERFAMILY SSF55874 281 439 6.42E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 Pfam PF00672 HAMP domain 172 222 3.2E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 Gene3D G3DSA:3.30.565.10 292 441 1.1E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 440 1.2E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 SMART SM00387 332 441 5.8E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 SMART SM00388 227 291 9.6E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 Gene3D G3DSA:1.10.287.130 217 287 4.7E-11 T 29-03-2018 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 SMART SM00304 171 226 6.1E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS14055 82195e2cc3d87c518f7a31a447b72f76 445 SUPERFAMILY SSF47384 210 290 1.43E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 18 36 - T 29-03-2018 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 Gene3D G3DSA:3.40.50.2300 68 188 1.3E-27 T 29-03-2018 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 17 62 2.3E-13 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 SUPERFAMILY SSF53822 72 327 1.16E-52 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 Gene3D G3DSA:1.10.260.40 17 67 5.6E-19 T 29-03-2018 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 Pfam PF13377 Periplasmic binding protein-like domain 182 343 1.3E-29 T 29-03-2018 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 SMART SM00354 15 85 2.1E-21 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 Gene3D G3DSA:3.40.50.2300 189 331 2.4E-36 T 29-03-2018 Y880_RS08940 44128bc565504ce2d9e47edbf6104302 343 SUPERFAMILY SSF47413 15 73 5.06E-15 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 Gene3D G3DSA:1.10.10.60 208 259 3.5E-9 T 29-03-2018 Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 Gene3D G3DSA:1.10.10.60 165 207 1.2E-9 T 29-03-2018 Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 SUPERFAMILY SSF46689 210 255 1.51E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 SUPERFAMILY SSF51182 16 182 3.11E-13 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 Pfam PF12833 Helix-turn-helix domain 181 256 1.3E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 SMART SM00342 173 255 6.5E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 Gene3D G3DSA:2.60.120.10 6 164 1.8E-11 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 Pfam PF02311 AraC-like ligand binding domain 19 143 2.7E-18 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS02405 7535d6219181a938e6320b36af334ae2 259 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 251 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 Gene3D G3DSA:3.40.50.1820 392 682 6.2E-39 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 Pfam PF00326 Prolyl oligopeptidase family 466 681 2.9E-69 T 29-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 SUPERFAMILY SSF53474 417 660 1.52E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 534 554 1.7E-51 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 450 468 1.7E-51 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 504 523 1.7E-51 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 592 607 1.7E-51 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 476 500 1.7E-51 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 610 632 1.7E-51 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 Gene3D G3DSA:2.130.10.120 65 391 2.4E-54 T 29-03-2018 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 12 402 8.0E-79 T 29-03-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 Y880_RS03415 352e822362c01edd8a684754994f2cd9 683 SUPERFAMILY SSF50993 2 410 1.88E-86 T 29-03-2018 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 Pfam PF00009 Elongation factor Tu GTP binding domain 11 274 2.2E-46 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 135 144 7.6E-12 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 13 26 7.6E-12 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 83 93 7.6E-12 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 99 110 7.6E-12 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 63 71 7.6E-12 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 Pfam PF16658 Class II release factor RF3, C-terminal domain 384 511 2.6E-45 T 29-03-2018 IPR032090 Peptide chain release factor 3, C-terminal Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 Pfam PF03144 Elongation factor Tu domain 2 311 376 3.1E-10 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 SUPERFAMILY SSF50447 259 390 5.08E-30 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 Gene3D G3DSA:3.40.50.300 3 267 1.6E-35 T 29-03-2018 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 SUPERFAMILY SSF52540 8 274 3.83E-87 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 Gene3D G3DSA:2.40.30.10 268 381 1.0E-19 T 29-03-2018 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 Gene3D G3DSA:3.30.70.870 385 462 1.4E-12 T 29-03-2018 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 526 8.5E-262 T 29-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 1.9E-16 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 524 51.441 T 29-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Y880_RS17740 8b12186d5ac1500a2fdb3a153e39ab87 527 SUPERFAMILY SSF54980 390 465 5.76E-18 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 270 7.5E-17 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 591 1.9E-34 T 29-03-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Gene3D G3DSA:2.40.110.10 160 271 9.8E-23 T 29-03-2018 Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Gene3D G3DSA:1.20.140.10 272 464 6.6E-45 T 29-03-2018 Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 SUPERFAMILY SSF47203 286 474 1.77E-52 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Gene3D G3DSA:1.10.540.10 19 155 1.0E-19 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 SUPERFAMILY SSF56645 36 279 4.84E-58 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 281 450 1.7E-25 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 29 1.3E-8 T 29-03-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y880_RS29220 9cfb59d2f33b88997c92db649f34ad74 598 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 156 1.5E-11 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 13 147 1.6E-66 T 29-03-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 SUPERFAMILY SSF54523 41 147 5.76E-40 T 29-03-2018 Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 34 6.1E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 PRINTS PR00813 Bacterial general secretion pathway protein G signature 50 68 3.7E-20 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 PRINTS PR00813 Bacterial general secretion pathway protein G signature 14 39 3.7E-20 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 35 8.2E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 Pfam PF08334 Type II secretion system (T2SS), protein G 37 146 1.9E-44 T 29-03-2018 IPR013545 Type II secretion system protein G Y880_RS13530 873ba170dc1c2d0bcd20a3f5f3432de6 148 Gene3D G3DSA:3.30.700.10 28 146 1.2E-36 T 29-03-2018 Y880_RS07825 a6f868115211159004371f00f23567bd 482 Gene3D G3DSA:3.40.605.10 2 263 1.8E-72 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS07825 a6f868115211159004371f00f23567bd 482 Pfam PF00171 Aldehyde dehydrogenase family 13 475 5.0E-140 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS07825 a6f868115211159004371f00f23567bd 482 SUPERFAMILY SSF53720 4 477 3.8E-138 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS07825 a6f868115211159004371f00f23567bd 482 Gene3D G3DSA:3.40.309.10 264 444 1.0E-62 T 29-03-2018 Y880_RS18385 92837a08d3c6f81630442e675a989dbc 221 Pfam PF09335 SNARE associated Golgi protein 47 172 2.4E-25 T 29-03-2018 IPR032816 SNARE associated Golgi protein Y880_RS04545 78db592c0c2211b00fef586546069059 332 Hamap MF_00813 Probable allantoicase [alc]. 1 330 47.593 T 29-03-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y880_RS04545 78db592c0c2211b00fef586546069059 332 TIGRFAM TIGR02961 allantoicase: allantoicase 11 328 2.0E-141 T 29-03-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y880_RS04545 78db592c0c2211b00fef586546069059 332 Gene3D G3DSA:2.60.120.260 1 168 9.8E-64 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS04545 78db592c0c2211b00fef586546069059 332 Gene3D G3DSA:2.60.120.260 169 332 3.1E-62 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS04545 78db592c0c2211b00fef586546069059 332 Pfam PF03561 Allantoicase repeat 187 327 1.2E-47 T 29-03-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y880_RS04545 78db592c0c2211b00fef586546069059 332 Pfam PF03561 Allantoicase repeat 20 164 4.4E-46 T 29-03-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y880_RS04545 78db592c0c2211b00fef586546069059 332 SUPERFAMILY SSF49785 177 329 3.23E-56 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS04545 78db592c0c2211b00fef586546069059 332 PIRSF PIRSF016516 1 331 2.0E-151 T 29-03-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y880_RS04545 78db592c0c2211b00fef586546069059 332 SUPERFAMILY SSF49785 6 168 4.68E-61 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS12595 dc2101a1773031c354bee6be022e66e7 229 Gene3D G3DSA:1.10.3720.10 1 225 1.8E-40 T 29-03-2018 Y880_RS12595 dc2101a1773031c354bee6be022e66e7 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 219 3.0E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS12595 dc2101a1773031c354bee6be022e66e7 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 115 5.4E-18 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS12595 dc2101a1773031c354bee6be022e66e7 229 SUPERFAMILY SSF161098 8 206 1.31E-41 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 Gene3D G3DSA:3.40.50.300 148 324 5.6E-27 T 29-03-2018 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 SUPERFAMILY SSF52172 12 197 1.08E-42 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 365 374 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 SUPERFAMILY SSF52540 152 381 4.48E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 Pfam PF02954 Bacterial regulatory protein, Fis family 406 446 9.0E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 Pfam PF00072 Response regulator receiver domain 13 122 8.0E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 Gene3D G3DSA:1.10.8.60 325 406 9.1E-21 T 29-03-2018 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 449 5.8E-5 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 412 429 5.8E-5 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 Gene3D G3DSA:1.10.10.60 407 453 1.1E-11 T 29-03-2018 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 Pfam PF00158 Sigma-54 interaction domain 152 318 5.9E-67 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 SMART SM00448 11 122 4.4E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 Gene3D G3DSA:3.40.50.2300 1 147 4.0E-30 T 29-03-2018 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 SUPERFAMILY SSF46689 397 448 1.79E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS24420 6e50548a6955be3e52d00cc6d4732aa0 462 SMART SM00382 172 315 1.9E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS23570 fe19d9413c35ae720be4f17e5b9def35 492 Gene3D G3DSA:1.10.510.10 64 219 4.0E-12 T 29-03-2018 Y880_RS23570 fe19d9413c35ae720be4f17e5b9def35 492 SUPERFAMILY SSF56112 289 460 2.08E-11 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS23570 fe19d9413c35ae720be4f17e5b9def35 492 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 322 449 3.8E-9 T 29-03-2018 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 Reactome: R-HSA-6782315|Reactome: R-HSA-6804756 Y880_RS23570 fe19d9413c35ae720be4f17e5b9def35 492 SUPERFAMILY SSF56112 49 176 2.63E-13 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS23570 fe19d9413c35ae720be4f17e5b9def35 492 Gene3D G3DSA:3.90.1200.10 261 487 2.1E-6 T 29-03-2018 Y880_RS20475 070b8e02d5e4c0c27587b24fa0187775 345 PRINTS PR00069 Aldo-keto reductase signature 163 180 2.2E-7 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS20475 070b8e02d5e4c0c27587b24fa0187775 345 PRINTS PR00069 Aldo-keto reductase signature 116 134 2.2E-7 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS20475 070b8e02d5e4c0c27587b24fa0187775 345 SUPERFAMILY SSF51430 1 343 1.03E-105 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS20475 070b8e02d5e4c0c27587b24fa0187775 345 Pfam PF00248 Aldo/keto reductase family 16 336 8.5E-67 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS20475 070b8e02d5e4c0c27587b24fa0187775 345 Gene3D G3DSA:3.20.20.100 1 345 2.9E-91 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS02380 09f201d396be6db52b6cab4302aee731 317 Gene3D G3DSA:3.40.50.300 1 232 1.9E-76 T 29-03-2018 Y880_RS02380 09f201d396be6db52b6cab4302aee731 317 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 21 232 2.4E-74 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS02380 09f201d396be6db52b6cab4302aee731 317 SMART SM00382 33 216 6.9E-5 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS02380 09f201d396be6db52b6cab4302aee731 317 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 5 312 2.6E-147 T 29-03-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS02380 09f201d396be6db52b6cab4302aee731 317 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 223 232 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS02380 09f201d396be6db52b6cab4302aee731 317 SUPERFAMILY SSF52540 2 238 1.35E-87 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28230 7b4d49096115d54dec8fcc467060a359 329 Gene3D G3DSA:2.130.10.10 46 216 1.1E-9 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS28230 7b4d49096115d54dec8fcc467060a359 329 Pfam PF06977 SdiA-regulated 70 316 8.7E-92 T 29-03-2018 IPR009722 SdiA-regulated Y880_RS28230 7b4d49096115d54dec8fcc467060a359 329 SUPERFAMILY SSF50956 39 318 1.09E-40 T 29-03-2018 Y880_RS28230 7b4d49096115d54dec8fcc467060a359 329 Gene3D G3DSA:2.120.10.30 232 329 7.2E-5 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS09045 1cb4c314e3b48cd58d6f4f61d0d23ba6 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 270 5.5E-16 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS09045 1cb4c314e3b48cd58d6f4f61d0d23ba6 277 SUPERFAMILY SSF161098 7 277 3.08E-63 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS09045 1cb4c314e3b48cd58d6f4f61d0d23ba6 277 Gene3D G3DSA:1.10.3720.10 12 267 6.4E-38 T 29-03-2018 Y880_RS22980 8dbd58077ccb664652e3c36e743b7454 204 PIRSF PIRSF005624 2 203 1.6E-46 T 29-03-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 Y880_RS22980 8dbd58077ccb664652e3c36e743b7454 204 Gene3D G3DSA:3.40.50.300 4 202 1.3E-18 T 29-03-2018 Y880_RS22980 8dbd58077ccb664652e3c36e743b7454 204 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 8 178 2.8E-35 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y880_RS22980 8dbd58077ccb664652e3c36e743b7454 204 SMART SM00382 4 183 0.0019 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS22980 8dbd58077ccb664652e3c36e743b7454 204 SUPERFAMILY SSF52540 3 197 1.79E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22980 8dbd58077ccb664652e3c36e743b7454 204 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 6 201 5.4E-106 T 29-03-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 Y880_RS22980 8dbd58077ccb664652e3c36e743b7454 204 Hamap MF_01389 Urease accessory protein UreG [ureG]. 4 202 48.063 T 29-03-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 Y880_RS12835 d76682d2ac9749f7dce41b5e1599eaab 336 Pfam PF02504 Fatty acid synthesis protein 6 325 3.5E-96 T 29-03-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Y880_RS12835 d76682d2ac9749f7dce41b5e1599eaab 336 SUPERFAMILY SSF53659 5 334 1.32E-101 T 29-03-2018 Y880_RS12835 d76682d2ac9749f7dce41b5e1599eaab 336 PIRSF PIRSF002465 3 335 1.3E-121 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Y880_RS12835 d76682d2ac9749f7dce41b5e1599eaab 336 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 336 140.598 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Y880_RS12835 d76682d2ac9749f7dce41b5e1599eaab 336 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 333 5.7E-100 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Y880_RS12835 d76682d2ac9749f7dce41b5e1599eaab 336 Gene3D G3DSA:3.40.718.10 2 335 2.3E-108 T 29-03-2018 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 Gene3D G3DSA:3.90.1150.10 343 444 3.4E-22 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 19 950 0.0 T 29-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 SUPERFAMILY SSF53383 929 951 2.09E-96 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 SUPERFAMILY SSF53383 473 887 2.09E-96 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 Gene3D G3DSA:3.90.1150.10 773 905 2.2E-40 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 Gene3D G3DSA:3.40.640.10 532 772 5.0E-36 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 10 956 25.761 T 29-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 SUPERFAMILY SSF53383 19 442 1.89E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 Gene3D G3DSA:3.40.640.10 98 342 1.9E-31 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 Pfam PF02347 Glycine cleavage system P-protein 18 441 4.4E-174 T 29-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y880_RS24665 5962f0de577f8c9530805806938d36a7 958 Pfam PF01212 Beta-eliminating lyase 546 711 7.0E-5 T 29-03-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Y880_RS13825 9d8ecff34df2b664f362bd657b81c67b 229 SUPERFAMILY SSF52540 7 223 9.46E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13825 9d8ecff34df2b664f362bd657b81c67b 229 Pfam PF02224 Cytidylate kinase 9 223 6.2E-77 T 29-03-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Y880_RS13825 9d8ecff34df2b664f362bd657b81c67b 229 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 220 1.4E-81 T 29-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Y880_RS13825 9d8ecff34df2b664f362bd657b81c67b 229 Hamap MF_00238 Cytidylate kinase [cmk]. 6 226 34.665 T 29-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Y880_RS13825 9d8ecff34df2b664f362bd657b81c67b 229 Gene3D G3DSA:3.40.50.300 5 225 1.1E-49 T 29-03-2018 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 SUPERFAMILY SSF102824 556 658 3.4E-22 T 29-03-2018 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 Pfam PF06958 S-type Pyocin 415 554 3.0E-36 T 29-03-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 Pfam PF11429 Colicin D 568 655 7.0E-21 T 29-03-2018 IPR024440 Colicin D C-terminal GO:0004540 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 SUPERFAMILY SSF69369 351 580 1.83E-53 T 29-03-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 PRINTS PR01300 Pyocin S killer protein signature 397 420 4.3E-69 T 29-03-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 PRINTS PR01300 Pyocin S killer protein signature 341 361 4.3E-69 T 29-03-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 PRINTS PR01300 Pyocin S killer protein signature 314 335 4.3E-69 T 29-03-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 PRINTS PR01300 Pyocin S killer protein signature 448 466 4.3E-69 T 29-03-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y880_RS02630 412d4f49bc361f4a51be0744aefd86ed 662 PRINTS PR01300 Pyocin S killer protein signature 362 380 4.3E-69 T 29-03-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 Pfam PF03129 Anticodon binding domain 335 422 2.0E-8 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 Gene3D G3DSA:3.40.50.800 328 429 6.8E-18 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 Pfam PF13393 Histidyl-tRNA synthetase 10 313 7.1E-45 T 29-03-2018 Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 PIRSF PIRSF001549 2 425 7.4E-116 T 29-03-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 414 2.6E-152 T 29-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 424 33.279 T 29-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 Gene3D G3DSA:3.30.930.10 2 324 1.3E-71 T 29-03-2018 Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 SUPERFAMILY SSF55681 6 323 6.7E-102 T 29-03-2018 Y880_RS17215 371c81b7db835f85b06f2ce3a7dd24ee 429 SUPERFAMILY SSF52954 330 425 5.4E-23 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 8.9E-58 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:3.40.50.300 68 186 1.8E-31 T 29-03-2018 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF54980 398 512 1.82E-25 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:2.40.30.10 187 293 5.3E-21 T 29-03-2018 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:3.30.70.870 302 400 1.2E-33 T 29-03-2018 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Pfam PF00679 Elongation factor G C-terminus 397 477 1.5E-21 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF54980 302 387 3.2E-15 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 1.7E-286 T 29-03-2018 IPR006298 GTP-binding protein TypA GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:3.40.50.300 2 67 5.4E-11 T 29-03-2018 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Pfam PF03144 Elongation factor Tu domain 2 219 289 9.6E-10 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF50447 151 299 1.79E-31 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:3.30.70.240 401 482 1.0E-17 T 29-03-2018 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF52540 3 219 3.85E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 1.1E-24 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:2.40.50.250 483 573 1.2E-35 T 29-03-2018 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 87 98 1.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 51 59 1.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 71 81 1.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 7 20 1.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS24145 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 123 132 1.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 SMART SM00825 Beta-ketoacyl synthase 4 405 3.9E-13 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 Gene3D G3DSA:3.40.47.10 258 403 1.0E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.1E-47 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 359 2.0E-29 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 SUPERFAMILY SSF53901 213 403 2.72E-60 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 Gene3D G3DSA:3.40.47.10 4 257 3.7E-59 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS05085 c00d6cbbf2a5ea5b9552be84ba781273 405 SUPERFAMILY SSF53901 1 251 1.58E-63 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 SMART SM00842 10 196 7.4E-107 T 29-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 Gene3D G3DSA:3.30.420.40 2 187 1.7E-40 T 29-03-2018 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 378 7.8E-159 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 SUPERFAMILY SSF53067 9 197 4.12E-63 T 29-03-2018 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 9.3E-32 T 29-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 PIRSF PIRSF003101 1 417 2.3E-161 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 Pfam PF14450 Cell division protein FtsA 11 193 2.6E-11 T 29-03-2018 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 Pfam PF14450 Cell division protein FtsA 207 374 4.0E-26 T 29-03-2018 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 Gene3D G3DSA:3.30.420.40 255 352 1.3E-22 T 29-03-2018 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 Gene3D G3DSA:3.30.420.40 197 254 5.8E-8 T 29-03-2018 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 417 31.729 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 Y880_RS20340 48e70e2a11407bbdc893c9d471f716c4 417 SUPERFAMILY SSF53067 198 378 6.68E-52 T 29-03-2018 Y880_RS04650 b797f19f9a88a3a28eb1b8ce239a3a30 84 Gene3D G3DSA:1.10.260.40 7 80 3.9E-14 T 29-03-2018 Y880_RS04650 b797f19f9a88a3a28eb1b8ce239a3a30 84 Pfam PF13560 Helix-turn-helix domain 15 73 1.7E-8 T 29-03-2018 Y880_RS04650 b797f19f9a88a3a28eb1b8ce239a3a30 84 SUPERFAMILY SSF47413 9 73 7.32E-13 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS04650 b797f19f9a88a3a28eb1b8ce239a3a30 84 SMART SM00530 16 71 1.2E-7 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 Gene3D G3DSA:3.40.640.10 83 372 2.4E-40 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 Pfam PF00155 Aminotransferase class I and II 167 449 5.6E-24 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 SUPERFAMILY SSF53383 98 467 3.85E-90 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 SUPERFAMILY SSF46785 2 69 7.12E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 Gene3D G3DSA:1.10.10.10 1 67 9.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 SMART SM00345 7 66 9.4E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.0E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS18910 51e6d3eecd731e702448303ea2390b23 471 Gene3D G3DSA:3.90.1150.10 373 469 2.7E-26 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS14255 9c92e8fbe408f71485fcfc290bf9bea5 211 Pfam PF00849 RNA pseudouridylate synthase 15 161 4.1E-30 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS14255 9c92e8fbe408f71485fcfc290bf9bea5 211 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 53 67 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS14255 9c92e8fbe408f71485fcfc290bf9bea5 211 SUPERFAMILY SSF55120 5 210 8.64E-62 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS14255 9c92e8fbe408f71485fcfc290bf9bea5 211 Gene3D G3DSA:3.30.2350.10 5 211 6.1E-60 T 29-03-2018 Y880_RS06645 b77f96a7cc791472ef2a689dda85f26e 162 Pfam PF03284 Phenazine biosynthesis protein A/B 10 162 1.8E-88 T 29-03-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y880_RS06645 b77f96a7cc791472ef2a689dda85f26e 162 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 15 162 4.0E-84 T 29-03-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y880_RS06645 b77f96a7cc791472ef2a689dda85f26e 162 SUPERFAMILY SSF54427 20 149 4.88E-25 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS06645 b77f96a7cc791472ef2a689dda85f26e 162 Gene3D G3DSA:3.10.450.50 12 152 2.8E-16 T 29-03-2018 Y880_RS06425 cd993a83a453d83efd91840254d55daa 480 Gene3D G3DSA:1.20.210.10 12 476 3.9E-91 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS06425 cd993a83a453d83efd91840254d55daa 480 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 13 468 3.2E-213 T 29-03-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y880_RS06425 cd993a83a453d83efd91840254d55daa 480 SUPERFAMILY SSF81442 11 468 4.84E-118 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS06425 cd993a83a453d83efd91840254d55daa 480 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 17 446 1.3E-109 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27900 aee78d5dba1fe8840718fa3f7dc76484 591 SUPERFAMILY SSF52540 178 265 1.65E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS27900 aee78d5dba1fe8840718fa3f7dc76484 591 SUPERFAMILY SSF52540 34 92 1.65E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS27900 aee78d5dba1fe8840718fa3f7dc76484 591 Gene3D G3DSA:3.40.50.300 39 411 4.9E-5 T 29-03-2018 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 21 71 2.2E-10 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 SUPERFAMILY SSF81923 10 131 5.23E-19 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 616 634 8.4E-31 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 661 679 8.4E-31 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 690 708 8.4E-31 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 723 737 8.4E-31 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 SMART SM00382 612 754 5.1E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 SMART SM00382 215 360 1.0E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Gene3D G3DSA:1.10.8.60 361 562 5.7E-38 T 29-03-2018 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 SUPERFAMILY SSF52540 561 838 9.56E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 10 849 0.0 T 29-03-2018 IPR017729 Type VI secretion system, ATPase ClpV1 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Gene3D G3DSA:1.10.8.60 796 849 2.4E-4 T 29-03-2018 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 220 332 2.7E-10 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Gene3D G3DSA:1.10.1780.10 1 159 1.2E-23 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 SUPERFAMILY SSF52540 176 535 4.51E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Gene3D G3DSA:3.40.50.300 564 795 1.1E-32 T 29-03-2018 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 781 848 1.7E-5 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Gene3D G3DSA:3.40.50.300 175 359 7.0E-21 T 29-03-2018 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 Pfam PF07724 AAA domain (Cdc48 subfamily) 611 775 4.2E-36 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS09200 0d4f99d3628772acf9ff95800822a64b 849 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 311 323 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y880_RS13450 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Pfam PF01513 ATP-NAD kinase 7 271 1.1E-68 T 29-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y880_RS13450 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Hamap MF_00361 NAD kinase [nadK]. 5 287 34.006 T 29-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y880_RS13450 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 SUPERFAMILY SSF111331 6 289 9.94E-90 T 29-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain Y880_RS13450 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Gene3D G3DSA:3.40.50.10330 1 140 1.2E-37 T 29-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 Y880_RS13450 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Gene3D G3DSA:2.60.200.30 141 264 6.0E-41 T 29-03-2018 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 Pfam PF00591 Glycosyl transferase family, a/b domain 75 329 9.5E-102 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 64 3.3E-18 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 Gene3D G3DSA:1.20.970.10 1 70 4.1E-23 T 29-03-2018 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 339 38.427 T 29-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 7 338 4.7E-121 T 29-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 Gene3D G3DSA:3.40.1030.10 73 349 2.2E-97 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 SUPERFAMILY SSF47648 1 67 9.81E-21 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS29950 1142b5fb766c82fa367be4b9eaded1c6 349 SUPERFAMILY SSF52418 75 340 1.57E-87 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SMART SM00267 460 629 1.7E-56 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Gene3D G3DSA:3.20.20.450 638 895 1.3E-103 T 29-03-2018 IPR001633 EAL domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Pfam PF00563 EAL domain 645 880 2.1E-78 T 29-03-2018 IPR001633 EAL domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 467 628 2.2E-35 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Pfam PF00990 Diguanylate cyclase, GGDEF domain 471 624 1.6E-39 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Gene3D G3DSA:3.30.70.270 486 637 2.3E-50 T 29-03-2018 Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SMART SM00086 418 460 8.1E-7 T 29-03-2018 IPR001610 PAC motif Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 346 466 1.1E-17 T 29-03-2018 IPR000014 PAS domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Pfam PF01590 GAF domain 193 332 7.5E-13 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Gene3D G3DSA:3.30.450.20 350 485 1.3E-28 T 29-03-2018 Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Gene3D G3DSA:3.30.450.40 155 349 6.8E-20 T 29-03-2018 IPR029016 GAF domain-like Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SMART SM00052 639 885 2.7E-123 T 29-03-2018 IPR001633 EAL domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SUPERFAMILY SSF55781 195 335 3.05E-19 T 29-03-2018 IPR029016 GAF domain-like Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SUPERFAMILY SSF141868 644 892 8.11E-92 T 29-03-2018 IPR001633 EAL domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SUPERFAMILY SSF55073 476 630 1.1E-43 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Pfam PF13426 PAS domain 358 459 7.6E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SMART SM00091 346 412 3.8E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SMART SM00091 24 87 59.0 T 29-03-2018 IPR000014 PAS domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SMART SM00065 192 343 5.2E-9 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 SUPERFAMILY SSF55785 352 458 3.22E-22 T 29-03-2018 IPR000014 PAS domain Y880_RS23635 5dbb740b1fd5fa97052365755732027c 899 Gene3D G3DSA:3.30.450.20 28 129 6.0E-5 T 29-03-2018 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 380 1.2E-51 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 Gene3D G3DSA:2.40.110.10 120 220 2.7E-35 T 29-03-2018 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 2.5E-18 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 SUPERFAMILY SSF47203 230 382 2.9E-55 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 PIRSF PIRSF016578 3 88 1.1 T 29-03-2018 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 PIRSF PIRSF016578 235 383 3.6E-13 T 29-03-2018 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 PIRSF PIRSF016578 129 195 0.02 T 29-03-2018 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 SUPERFAMILY SSF56645 1 243 6.54E-69 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 Gene3D G3DSA:1.10.540.10 1 119 2.2E-23 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 220 2.4E-25 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS23425 e293d9e64f6f5d29c58eb330e921e681 386 Gene3D G3DSA:1.20.140.10 221 384 2.8E-63 T 29-03-2018 Y880_RS09025 0c8be67b35698556d95d47bf5aa28b8a 446 SUPERFAMILY SSF50998 212 262 4.12E-7 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS09025 0c8be67b35698556d95d47bf5aa28b8a 446 SUPERFAMILY SSF50998 39 130 4.12E-7 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS09025 0c8be67b35698556d95d47bf5aa28b8a 446 SUPERFAMILY SSF50998 295 394 4.12E-7 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS09025 0c8be67b35698556d95d47bf5aa28b8a 446 Gene3D G3DSA:2.140.10.10 12 230 0.057 T 29-03-2018 Y880_RS09025 0c8be67b35698556d95d47bf5aa28b8a 446 Pfam PF05935 Arylsulfotransferase (ASST) 103 378 1.0E-22 T 29-03-2018 IPR010262 Arylsulfotransferase, C-terminal Y880_RS09025 0c8be67b35698556d95d47bf5aa28b8a 446 Gene3D G3DSA:2.140.10.10 231 423 6.5E-4 T 29-03-2018 Y880_RS08735 8b760c1f513b55b74b334a6eaffbd55d 156 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 134 7.6E-30 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily Y880_RS08735 8b760c1f513b55b74b334a6eaffbd55d 156 SMART SM00226 1 136 1.4E-54 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily Y880_RS08735 8b760c1f513b55b74b334a6eaffbd55d 156 SUPERFAMILY SSF52788 1 136 1.23E-36 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily Y880_RS08735 8b760c1f513b55b74b334a6eaffbd55d 156 Gene3D G3DSA:3.40.50.2300 1 135 4.9E-31 T 29-03-2018 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 Gene3D G3DSA:3.40.605.10 556 829 4.4E-74 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 74 187 2.2E-45 T 29-03-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 841 852 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 533 1037 5.5E-212 T 29-03-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 Pfam PF00171 Aldehyde dehydrogenase family 583 1037 2.2E-115 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 Gene3D G3DSA:3.20.20.220 114 533 2.1E-106 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 Gene3D G3DSA:3.20.20.220 17 113 6.0E-11 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 SUPERFAMILY SSF81935 19 189 1.83E-62 T 29-03-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 SUPERFAMILY SSF51730 190 540 4.32E-114 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 Pfam PF01619 Proline dehydrogenase 197 496 5.8E-95 T 29-03-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 PIRSF PIRSF000197 4 1057 0.0 T 29-03-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 SUPERFAMILY SSF53720 553 1042 1.2E-127 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS00525 768bc4cd4e37a92cb4961ca1604a9e55 1060 Gene3D G3DSA:3.40.309.10 830 1019 8.8E-48 T 29-03-2018 Y880_RS22840 bbd98d103d66c54e6bda4ac6e100ed7c 100 SUPERFAMILY SSF54111 1 99 2.09E-46 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22840 bbd98d103d66c54e6bda4ac6e100ed7c 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 1.0E-51 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22840 bbd98d103d66c54e6bda4ac6e100ed7c 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 5.0E-37 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22840 bbd98d103d66c54e6bda4ac6e100ed7c 100 Pfam PF00547 Urease, gamma subunit 1 99 3.6E-47 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22840 bbd98d103d66c54e6bda4ac6e100ed7c 100 PIRSF PIRSF001223 1 100 1.8E-50 T 29-03-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22840 bbd98d103d66c54e6bda4ac6e100ed7c 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.757 T 29-03-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22840 bbd98d103d66c54e6bda4ac6e100ed7c 100 Gene3D G3DSA:3.30.280.10 2 99 6.1E-48 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS04105 5d4239518d0156d907a289d04488eb2a 529 Gene3D G3DSA:2.130.10.10 434 523 5.1E-10 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS04105 5d4239518d0156d907a289d04488eb2a 529 Gene3D G3DSA:2.130.10.10 10 178 1.8E-9 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS04105 5d4239518d0156d907a289d04488eb2a 529 SUPERFAMILY SSF50998 427 511 5.18E-22 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS04105 5d4239518d0156d907a289d04488eb2a 529 SUPERFAMILY SSF50998 19 121 5.18E-22 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS04105 5d4239518d0156d907a289d04488eb2a 529 SUPERFAMILY SSF50998 207 262 5.18E-22 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS04105 5d4239518d0156d907a289d04488eb2a 529 Gene3D G3DSA:2.120.10.30 208 433 8.9E-5 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 Gene3D G3DSA:2.40.50.100 280 358 2.1E-21 T 29-03-2018 Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 Pfam PF00005 ABC transporter 19 162 8.0E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 SUPERFAMILY SSF52540 10 225 1.45E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 SMART SM00382 25 212 2.3E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 SUPERFAMILY SSF50331 239 360 4.54E-21 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 Pfam PF03459 TOBE domain 297 359 7.8E-18 T 29-03-2018 IPR005116 Transport-associated OB, type 1 Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 Gene3D G3DSA:3.40.50.300 1 234 1.6E-57 T 29-03-2018 Y880_RS06450 e0b2d889ba16b99f76ea5d99e2439787 361 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 4 359 3.9E-142 T 29-03-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 Y880_RS20520 8d49de4ffc9ce6e1db406f1dd145acdb 305 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 28 260 2.3E-67 T 29-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 Y880_RS20520 8d49de4ffc9ce6e1db406f1dd145acdb 305 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 8 305 3.7E-159 T 29-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y880_RS20520 8d49de4ffc9ce6e1db406f1dd145acdb 305 Gene3D G3DSA:3.40.50.620 2 303 2.0E-41 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS20520 8d49de4ffc9ce6e1db406f1dd145acdb 305 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 3 305 56.959 T 29-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y880_RS20520 8d49de4ffc9ce6e1db406f1dd145acdb 305 PIRSF PIRSF002936 1 305 1.5E-155 T 29-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y880_RS20520 8d49de4ffc9ce6e1db406f1dd145acdb 305 SUPERFAMILY SSF52402 5 209 1.65E-77 T 29-03-2018 Y880_RS01865 c56e8d6d68bc30d165131b8bad69a91c 383 PIRSF PIRSF000429 3 375 1.1E-25 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS01865 c56e8d6d68bc30d165131b8bad69a91c 383 Pfam PF02803 Thiolase, C-terminal domain 250 358 3.7E-7 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS01865 c56e8d6d68bc30d165131b8bad69a91c 383 SUPERFAMILY SSF53901 248 369 1.54E-25 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01865 c56e8d6d68bc30d165131b8bad69a91c 383 SUPERFAMILY SSF53901 8 224 3.01E-23 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01865 c56e8d6d68bc30d165131b8bad69a91c 383 Gene3D G3DSA:3.40.47.10 24 112 0.064 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01865 c56e8d6d68bc30d165131b8bad69a91c 383 Gene3D G3DSA:3.40.47.10 140 373 2.2E-30 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 Pfam PF00122 E1-E2 ATPase 121 312 3.6E-52 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SUPERFAMILY SSF81660 339 539 2.18E-54 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SMART SM00831 11 84 1.3E-32 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 Gene3D G3DSA:3.40.1110.10 295 542 6.7E-46 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 334 340 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 668 693 6.0E-20 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 636 652 6.0E-20 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 608 624 6.0E-20 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 493 511 6.0E-20 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 332 346 1.5E-41 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 169 183 1.5E-41 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 535 546 1.5E-41 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 672 1.5E-41 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 636 655 1.5E-41 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 557 567 1.5E-41 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 Pfam PF00690 Cation transporter/ATPase, N-terminus 13 78 6.8E-16 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SUPERFAMILY SSF81653 122 229 2.48E-30 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 Gene3D G3DSA:2.70.150.10 20 232 2.4E-44 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 90 353 6.7E-41 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 607 728 1.1E-35 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 Pfam PF00702 haloacid dehalogenase-like hydrolase 329 650 3.0E-21 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 Gene3D G3DSA:1.20.1110.10 572 902 3.8E-90 T 29-03-2018 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SUPERFAMILY SSF56784 330 350 3.04E-62 T 29-03-2018 IPR023214 HAD-like domain Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SUPERFAMILY SSF56784 490 740 3.04E-62 T 29-03-2018 IPR023214 HAD-like domain Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SUPERFAMILY SSF81665 232 326 3.53E-121 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SUPERFAMILY SSF81665 686 898 3.53E-121 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 SUPERFAMILY SSF81665 11 122 3.53E-121 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS04115 4fab246c1f105b0ffdb4ae9e458b1045 902 Pfam PF00689 Cation transporting ATPase, C-terminus 721 893 4.2E-45 T 29-03-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Y880_RS15365 d20f14767423ee7ee70568123a090b2b 212 Gene3D G3DSA:3.30.1020.10 152 212 2.2E-25 T 29-03-2018 Y880_RS15365 d20f14767423ee7ee70568123a090b2b 212 SUPERFAMILY SSF52833 3 209 6.94E-69 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS15365 d20f14767423ee7ee70568123a090b2b 212 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 191 7.5E-12 T 29-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS15365 d20f14767423ee7ee70568123a090b2b 212 PIRSF PIRSF000239 1 209 1.5E-78 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS15365 d20f14767423ee7ee70568123a090b2b 212 Gene3D G3DSA:3.40.30.10 1 151 2.3E-39 T 29-03-2018 Y880_RS15365 d20f14767423ee7ee70568123a090b2b 212 Pfam PF00578 AhpC/TSA family 6 135 1.1E-30 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS06600 5cd974247938799d3863d42fb2678fb4 207 SUPERFAMILY SSF52833 1 85 1.88E-22 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS06600 5cd974247938799d3863d42fb2678fb4 207 Gene3D G3DSA:3.40.30.10 1 93 2.3E-27 T 29-03-2018 Y880_RS06600 5cd974247938799d3863d42fb2678fb4 207 Gene3D G3DSA:1.20.1050.10 94 194 1.1E-22 T 29-03-2018 Y880_RS06600 5cd974247938799d3863d42fb2678fb4 207 SUPERFAMILY SSF47616 80 200 5.57E-28 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS06600 5cd974247938799d3863d42fb2678fb4 207 Pfam PF00043 Glutathione S-transferase, C-terminal domain 111 196 6.0E-6 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS06600 5cd974247938799d3863d42fb2678fb4 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 80 7.0E-15 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 SMART SM00052 515 761 1.9E-110 T 29-03-2018 IPR001633 EAL domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 341 503 1.6E-45 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 SUPERFAMILY SSF55073 350 506 5.1E-47 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 Pfam PF00990 Diguanylate cyclase, GGDEF domain 345 501 1.6E-46 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 SMART SM00267 334 505 1.0E-55 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 Pfam PF03707 Bacterial signalling protein N terminal repeat 259 320 1.2E-6 T 29-03-2018 IPR005330 MHYT domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 Pfam PF03707 Bacterial signalling protein N terminal repeat 189 241 9.1E-15 T 29-03-2018 IPR005330 MHYT domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 Pfam PF03707 Bacterial signalling protein N terminal repeat 126 182 2.2E-16 T 29-03-2018 IPR005330 MHYT domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 Gene3D G3DSA:3.30.70.270 339 512 7.1E-57 T 29-03-2018 Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 SUPERFAMILY SSF141868 520 769 5.1E-88 T 29-03-2018 IPR001633 EAL domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 Pfam PF00563 EAL domain 521 756 2.8E-75 T 29-03-2018 IPR001633 EAL domain Y880_RS14630 cb6e5fd638f4ddb046e831ad36c3da6a 783 Gene3D G3DSA:3.20.20.450 513 774 1.1E-99 T 29-03-2018 IPR001633 EAL domain Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 258 44.824 T 29-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 SUPERFAMILY SSF56281 3 258 5.24E-73 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 Pfam PF00753 Metallo-beta-lactamase superfamily 14 170 1.7E-15 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 PIRSF PIRSF005457 1 258 1.9E-104 T 29-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 258 1.1E-105 T 29-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 Gene3D G3DSA:3.60.15.10 1 258 3.9E-74 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 171 258 2.5E-26 T 29-03-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y880_RS06195 5bd7398071c4f9c1d2729e5e648a437f 258 SMART SM00849 12 170 3.6E-38 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS02035 84fac98e0b220772ede9e9a089a33525 293 Pfam PF00691 OmpA family 195 274 1.3E-13 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS02035 84fac98e0b220772ede9e9a089a33525 293 SUPERFAMILY SSF103088 168 280 6.28E-26 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS02035 84fac98e0b220772ede9e9a089a33525 293 Gene3D G3DSA:3.30.1330.60 133 286 1.8E-26 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS07815 d61a24aef997364cc47b015b2f5ff9a6 310 Pfam PF03466 LysR substrate binding domain 88 290 1.0E-42 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS07815 d61a24aef997364cc47b015b2f5ff9a6 310 Gene3D G3DSA:3.40.190.10 176 262 4.5E-23 T 29-03-2018 Y880_RS07815 d61a24aef997364cc47b015b2f5ff9a6 310 Gene3D G3DSA:3.40.190.10 79 175 8.6E-18 T 29-03-2018 Y880_RS07815 d61a24aef997364cc47b015b2f5ff9a6 310 SUPERFAMILY SSF46785 6 111 8.18E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07815 d61a24aef997364cc47b015b2f5ff9a6 310 Gene3D G3DSA:1.10.10.10 2 78 5.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07815 d61a24aef997364cc47b015b2f5ff9a6 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 1.4E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07815 d61a24aef997364cc47b015b2f5ff9a6 310 SUPERFAMILY SSF53850 87 294 6.88E-43 T 29-03-2018 Y880_RS16195 c6038ae8eff90cfc980fcec93f76d070 256 Gene3D G3DSA:1.10.3720.10 5 251 8.6E-44 T 29-03-2018 Y880_RS16195 c6038ae8eff90cfc980fcec93f76d070 256 SUPERFAMILY SSF161098 3 249 1.12E-55 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS16195 c6038ae8eff90cfc980fcec93f76d070 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 245 7.7E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS29905 f4768a7bb9d1a96ddef2af2447393683 256 Gene3D G3DSA:3.40.140.10 1 103 2.6E-15 T 29-03-2018 Y880_RS29905 f4768a7bb9d1a96ddef2af2447393683 256 Pfam PF14464 Prokaryotic homologs of the JAB domain 5 100 1.3E-18 T 29-03-2018 IPR028090 JAB domain, prokaryotic Y880_RS29905 f4768a7bb9d1a96ddef2af2447393683 256 Pfam PF00877 NlpC/P60 family 119 250 1.1E-19 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y880_RS29905 f4768a7bb9d1a96ddef2af2447393683 256 SUPERFAMILY SSF102712 1 139 2.22E-24 T 29-03-2018 Y880_RS29905 f4768a7bb9d1a96ddef2af2447393683 256 SUPERFAMILY SSF54001 113 253 2.84E-14 T 29-03-2018 Y880_RS29905 f4768a7bb9d1a96ddef2af2447393683 256 Gene3D G3DSA:3.90.1720.10 104 256 1.2E-11 T 29-03-2018 Y880_RS29905 f4768a7bb9d1a96ddef2af2447393683 256 SMART SM00232 1 127 9.5E-5 T 29-03-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 PRINTS PR00050 Cold shock protein signature 7 22 6.6E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 PRINTS PR00050 Cold shock protein signature 42 60 6.6E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 PRINTS PR00050 Cold shock protein signature 27 36 6.6E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 Gene3D G3DSA:2.40.50.140 1 69 8.7E-27 T 29-03-2018 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 2.3E-28 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 PIRSF PIRSF002599 1 69 2.0E-22 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 29-03-2018 IPR019844 Cold-shock conserved site Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 SMART SM00357 6 69 4.0E-29 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 Y880_RS14375 d401db42343047fc26861ae9ec183bf4 69 SUPERFAMILY SSF50249 3 68 1.09E-23 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS27410 ee3debc7f5f111db74575a83dcac343f 356 Gene3D G3DSA:2.40.50.100 56 112 2.1E-16 T 29-03-2018 Y880_RS27410 ee3debc7f5f111db74575a83dcac343f 356 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 351 5.1E-74 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS27410 ee3debc7f5f111db74575a83dcac343f 356 Gene3D G3DSA:2.40.50.100 165 349 2.5E-8 T 29-03-2018 Y880_RS27410 ee3debc7f5f111db74575a83dcac343f 356 Gene3D G3DSA:1.10.287.470 113 149 4.3E-8 T 29-03-2018 Y880_RS27410 ee3debc7f5f111db74575a83dcac343f 356 Gene3D G3DSA:1.10.287.470 150 164 0.26 T 29-03-2018 Y880_RS27410 ee3debc7f5f111db74575a83dcac343f 356 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 264 4.0E-17 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS27410 ee3debc7f5f111db74575a83dcac343f 356 SUPERFAMILY SSF111369 47 274 8.63E-24 T 29-03-2018 Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 Gene3D G3DSA:3.40.50.10090 11 56 7.5E-11 T 29-03-2018 Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 253 6.7E-54 T 29-03-2018 Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.6E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 2.6E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 2.6E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 2.6E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.6E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 2.6E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 Gene3D G3DSA:3.40.50.720 57 266 2.6E-50 T 29-03-2018 Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 197 0.001 T 29-03-2018 Y880_RS12405 ca78baf00c36a38a7e34b2ea2b105932 292 SUPERFAMILY SSF51735 13 254 1.85E-69 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 SUPERFAMILY SSF52540 152 346 2.25E-33 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 2 948 28.072 T 29-03-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 Gene3D G3DSA:3.40.50.10810 155 371 7.0E-25 T 29-03-2018 Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 SMART SM00487 149 346 5.0E-19 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 Gene3D G3DSA:3.40.50.300 458 621 3.9E-22 T 29-03-2018 Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 SUPERFAMILY SSF52540 463 630 2.92E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 SUPERFAMILY SSF52540 270 334 2.92E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 Pfam PF12137 RNA polymerase recycling family C-terminal 588 946 2.6E-139 T 29-03-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 SMART SM00490 500 584 1.2E-15 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 Pfam PF00176 SNF2 family N-terminal domain 173 356 2.7E-14 T 29-03-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y880_RS14610 effe0640ba47a6d06d9a2964b0f8bf19 948 Pfam PF00271 Helicase conserved C-terminal domain 475 584 4.3E-13 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS07075 88e81ce7c991d9db2d50a1d1d1bec91d 145 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 62 138 8.5E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07075 88e81ce7c991d9db2d50a1d1d1bec91d 145 Gene3D G3DSA:1.10.760.10 46 145 9.9E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07075 88e81ce7c991d9db2d50a1d1d1bec91d 145 SUPERFAMILY SSF46626 11 141 4.66E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07075 88e81ce7c991d9db2d50a1d1d1bec91d 145 TIGRFAM TIGR04494 c550_PedF: cytochrome c-550 PedF 11 143 1.0E-63 T 29-03-2018 IPR030991 Cytochrome c-550 PedF Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 SUPERFAMILY SSF52540 73 152 8.76E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 SUPERFAMILY SSF52540 188 373 8.76E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 Pfam PF01926 50S ribosome-binding GTPase 219 307 4.6E-24 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 455 32.863 T 29-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 SUPERFAMILY SSF116878 121 220 1.96E-50 T 29-03-2018 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 SUPERFAMILY SSF116878 380 455 1.96E-50 T 29-03-2018 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 Pfam PF12631 MnmE helical domain 123 452 6.7E-59 T 29-03-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 Gene3D G3DSA:1.20.120.430 282 455 2.1E-34 T 29-03-2018 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 286 304 5.2E-5 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 239 5.2E-5 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 217 367 5.1E-20 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 Gene3D G3DSA:1.20.120.430 122 281 6.2E-28 T 29-03-2018 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 120 2.5E-36 T 29-03-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 Gene3D G3DSA:3.30.1360.120 1 121 1.7E-43 T 29-03-2018 Y880_RS26570 fe36e97abae377cffa1d31616724ede0 455 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 12 455 3.3E-103 T 29-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Y880_RS04340 cc9bc41bbb895896b5c710a7a58af7b3 492 Pfam PF02120 Flagellar hook-length control protein FliK 398 478 4.4E-19 T 29-03-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Y880_RS29975 902d81795222cec74c793babab6bf0b7 215 Gene3D G3DSA:1.20.1260.10 45 188 6.9E-23 T 29-03-2018 IPR012347 Ferritin-related Y880_RS29975 902d81795222cec74c793babab6bf0b7 215 SUPERFAMILY SSF47240 51 183 8.57E-18 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS29975 902d81795222cec74c793babab6bf0b7 215 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 14 215 30.303 T 29-03-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Y880_RS29975 902d81795222cec74c793babab6bf0b7 215 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 53 212 9.2E-39 T 29-03-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Y880_RS03945 498fdcfc082135f9eba8b2e2fde3810a 745 SUPERFAMILY SSF53474 299 499 7.18E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03945 498fdcfc082135f9eba8b2e2fde3810a 745 Gene3D G3DSA:3.40.50.1820 215 546 5.0E-49 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03945 498fdcfc082135f9eba8b2e2fde3810a 745 Pfam PF01764 Lipase (class 3) 356 480 4.3E-28 T 29-03-2018 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 Y880_RS25060 667db6c23d7a55f034f55aab0a6978b7 86 Pfam PF04380 Membrane fusogenic activity 5 78 5.5E-25 T 29-03-2018 IPR007475 Membrane fusogenic activity Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 Gene3D G3DSA:3.90.180.10 1 145 5.1E-30 T 29-03-2018 Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 Pfam PF00107 Zinc-binding dehydrogenase 154 287 6.1E-20 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 SUPERFAMILY SSF50129 2 136 3.21E-26 T 29-03-2018 IPR011032 GroES-like Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 Pfam PF16884 N-terminal domain of oxidoreductase 4 108 3.1E-22 T 29-03-2018 Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 SMART SM00829 14 328 3.4E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 Gene3D G3DSA:3.90.180.10 236 331 1.7E-7 T 29-03-2018 Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 SUPERFAMILY SSF51735 120 296 6.91E-44 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS17020 3188c53879c5b7fdcd2de2a8848f5bd3 331 Gene3D G3DSA:3.40.50.720 146 235 9.0E-15 T 29-03-2018 Y880_RS27075 54e697c2550471b9854c335bedfdf642 430 Pfam PF05488 PAAR motif 80 151 1.7E-12 T 29-03-2018 IPR008727 PAAR motif Y880_RS27075 54e697c2550471b9854c335bedfdf642 430 Pfam PF15538 Bacterial toxin 46 266 422 3.0E-97 T 29-03-2018 IPR028238 Bacterial toxin 46 Y880_RS22260 e6b8616b2d5c6e134a441db2369a2381 104 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 12 93 2.0E-41 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y880_RS22260 e6b8616b2d5c6e134a441db2369a2381 104 Gene3D G3DSA:3.30.110.60 2 97 6.3E-23 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y880_RS22260 e6b8616b2d5c6e134a441db2369a2381 104 SUPERFAMILY SSF75471 1 96 9.55E-28 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y880_RS22260 e6b8616b2d5c6e134a441db2369a2381 104 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 2.7E-18 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y880_RS22260 e6b8616b2d5c6e134a441db2369a2381 104 SMART SM01103 3 86 1.6E-38 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y880_RS22260 e6b8616b2d5c6e134a441db2369a2381 104 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 94 2.4E-23 T 29-03-2018 IPR017924 RNA-binding protein YhbY GO:0003723 Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 SUPERFAMILY SSF46785 12 79 8.52E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 Gene3D G3DSA:1.10.10.10 9 78 1.3E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 Pfam PF07729 FCD domain 85 204 2.5E-28 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 SUPERFAMILY SSF48008 82 215 6.54E-28 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 6.6E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 SMART SM00345 17 75 3.9E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 SMART SM00895 85 206 1.2E-19 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS03250 84714106c48ce87005ee06d8adc50fb5 222 Gene3D G3DSA:1.20.120.530 79 222 1.8E-30 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 1.1E-55 T 29-03-2018 Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 193 5.1E-5 T 29-03-2018 Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.7E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 2.7E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 2.7E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.0E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.0E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.0E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.0E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.0E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 2.0E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 Gene3D G3DSA:3.40.50.10090 1 49 3.7E-8 T 29-03-2018 Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 SUPERFAMILY SSF51735 4 250 1.9E-72 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS20240 e5396bf928a513de5af6b83f02d5250c 252 Gene3D G3DSA:3.40.50.720 50 252 2.3E-59 T 29-03-2018 Y880_RS27195 68d43444f221e5f3c88bb7e0b0ed4c7a 157 SUPERFAMILY SSF46785 6 144 2.03E-43 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27195 68d43444f221e5f3c88bb7e0b0ed4c7a 157 Pfam PF01638 HxlR-like helix-turn-helix 19 104 4.0E-23 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type Y880_RS27195 68d43444f221e5f3c88bb7e0b0ed4c7a 157 Gene3D G3DSA:1.10.10.10 1 147 6.6E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04235 767c09584c9086cc6188aaf389a390ae 429 Pfam PF00448 SRP54-type protein, GTPase domain 211 399 4.8E-40 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS04235 767c09584c9086cc6188aaf389a390ae 429 SUPERFAMILY SSF52540 207 398 2.64E-28 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS04235 767c09584c9086cc6188aaf389a390ae 429 SMART SM00382 208 379 4.4E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS04235 767c09584c9086cc6188aaf389a390ae 429 Gene3D G3DSA:3.40.50.300 206 402 6.3E-16 T 29-03-2018 Y880_RS04235 767c09584c9086cc6188aaf389a390ae 429 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 297 7.0E-77 T 29-03-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 Y880_RS04235 767c09584c9086cc6188aaf389a390ae 429 SMART SM00962 209 401 2.9E-46 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y880_RS14285 9f07b24f4fb8098fd874ad1717912554 279 SUPERFAMILY SSF161098 7 275 8.11E-43 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS14285 9f07b24f4fb8098fd874ad1717912554 279 Gene3D G3DSA:1.10.3720.10 9 279 3.0E-34 T 29-03-2018 Y880_RS14285 9f07b24f4fb8098fd874ad1717912554 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 270 5.2E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24255 70394b6f889b7968cce56619dac237e9 251 SUPERFAMILY SSF53850 30 250 5.25E-36 T 29-03-2018 Y880_RS24255 70394b6f889b7968cce56619dac237e9 251 Gene3D G3DSA:3.40.190.10 176 251 0.017 T 29-03-2018 Y880_RS24255 70394b6f889b7968cce56619dac237e9 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 250 3.3E-19 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS24255 70394b6f889b7968cce56619dac237e9 251 Gene3D G3DSA:3.40.190.10 21 175 1.5E-16 T 29-03-2018 Y880_RS24255 70394b6f889b7968cce56619dac237e9 251 SMART SM00062 29 251 0.0032 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS16245 7abf20a080e7986101d8950ecee5174b 335 Pfam PF07676 WD40-like Beta Propeller Repeat 91 111 0.014 T 29-03-2018 IPR011659 WD40-like Beta Propeller Y880_RS16245 7abf20a080e7986101d8950ecee5174b 335 Gene3D G3DSA:2.140.10.30 157 314 3.9E-5 T 29-03-2018 Y880_RS16245 7abf20a080e7986101d8950ecee5174b 335 Gene3D G3DSA:2.140.10.30 17 156 3.2E-12 T 29-03-2018 Y880_RS16245 7abf20a080e7986101d8950ecee5174b 335 SUPERFAMILY SSF69304 45 313 1.31E-17 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 SUPERFAMILY SSF47781 416 603 1.37E-52 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:3.30.1490.70 253 333 3.2E-21 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:1.10.287.610 1 70 1.8E-27 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 SMART SM00292 713 790 2.1E-9 T 29-03-2018 IPR001357 BRCT domain Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 SUPERFAMILY SSF52113 714 788 3.92E-17 T 29-03-2018 IPR001357 BRCT domain Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 330 5.3E-125 T 29-03-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Pfam PF12826 Helix-hairpin-helix motif 534 597 3.1E-21 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Pfam PF12826 Helix-hairpin-helix motif 631 687 1.3E-8 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:2.40.50.140 334 402 7.1E-34 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 419 458 1.3E-13 T 29-03-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 14 617 1.4E-221 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:3.40.50.10190 720 791 4.0E-15 T 29-03-2018 IPR001357 BRCT domain Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 SMART SM00532 6 472 8.1E-257 T 29-03-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 128 157 - T 29-03-2018 IPR018239 NAD-dependent DNA ligase, active site Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:3.30.470.30 132 252 5.0E-53 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 SUPERFAMILY SSF50249 330 412 3.26E-28 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Hamap MF_01588 DNA ligase [ligA]. 5 787 53.002 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 SUPERFAMILY SSF56091 3 328 2.16E-118 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:1.10.150.20 623 707 1.3E-14 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:1.10.150.20 530 612 6.4E-23 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 713 787 1.4E-11 T 29-03-2018 IPR001357 BRCT domain Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 334 410 3.1E-35 T 29-03-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 PIRSF PIRSF001604 1 622 1.8E-211 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 PIRSF PIRSF001604 620 792 1.7E-31 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 SUPERFAMILY SSF47781 618 704 7.41E-14 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 Gene3D G3DSA:1.10.150.20 456 529 3.7E-26 T 29-03-2018 Y880_RS04620 91ede2bc259a45896c213e28ae90ab91 794 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 343 358 - T 29-03-2018 IPR033136 NAD-dependent DNA ligase, conserved site Y880_RS15305 d243245aec86c699a165b8d264972dab 123 Pfam PF02152 Dihydroneopterin aldolase 11 119 2.1E-25 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y880_RS15305 d243245aec86c699a165b8d264972dab 123 SMART SM00905 11 121 1.1E-32 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y880_RS15305 d243245aec86c699a165b8d264972dab 123 SUPERFAMILY SSF55620 7 120 2.48E-30 T 29-03-2018 Y880_RS15305 d243245aec86c699a165b8d264972dab 123 Gene3D G3DSA:3.30.1130.10 3 123 7.3E-30 T 29-03-2018 Y880_RS15305 d243245aec86c699a165b8d264972dab 123 TIGRFAM TIGR00526 folB_dom: FolB domain 8 119 1.5E-31 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 SUPERFAMILY SSF48179 287 490 3.74E-61 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 SUPERFAMILY SSF51735 2 286 3.15E-104 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 Gene3D G3DSA:3.40.50.720 1 285 1.7E-112 T 29-03-2018 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 27 192 7.0E-47 T 29-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 PRINTS PR00084 Mannitol dehydrogenase signature 252 267 6.0E-21 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 PRINTS PR00084 Mannitol dehydrogenase signature 222 235 6.0E-21 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 PRINTS PR00084 Mannitol dehydrogenase signature 183 196 6.0E-21 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 PRINTS PR00084 Mannitol dehydrogenase signature 29 39 6.0E-21 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 Gene3D G3DSA:1.10.1040.10 286 491 2.2E-66 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 222 234 - T 29-03-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y880_RS09055 1c06f571d28c395b68983d1653aacbda 491 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 221 455 3.4E-76 T 29-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 Y880_RS04615 fff8a43449bceb4e21918d0450591efe 289 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 150 277 7.0E-70 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y880_RS04615 fff8a43449bceb4e21918d0450591efe 289 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 149 276 4.4E-49 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y880_RS04615 fff8a43449bceb4e21918d0450591efe 289 Gene3D G3DSA:3.30.1400.10 148 280 3.6E-52 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y880_RS04615 fff8a43449bceb4e21918d0450591efe 289 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 5 277 2.5E-106 T 29-03-2018 IPR011919 Cell division protein ZipA GO:0007049|GO:0016021|GO:0090529 Y880_RS04615 fff8a43449bceb4e21918d0450591efe 289 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 279 23.775 T 29-03-2018 IPR011919 Cell division protein ZipA GO:0007049|GO:0016021|GO:0090529 Y880_RS04615 fff8a43449bceb4e21918d0450591efe 289 SUPERFAMILY SSF64383 147 283 2.75E-47 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y880_RS04615 fff8a43449bceb4e21918d0450591efe 289 SMART SM00771 147 277 7.5E-71 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y880_RS12850 c61529f2231555767e1818309ef0482e 192 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 2.0E-56 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS12850 c61529f2231555767e1818309ef0482e 192 PIRSF PIRSF006305 1 191 1.9E-46 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS12850 c61529f2231555767e1818309ef0482e 192 Pfam PF02545 Maf-like protein 4 185 8.1E-45 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS12850 c61529f2231555767e1818309ef0482e 192 SUPERFAMILY SSF52972 2 185 6.21E-58 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y880_RS12850 c61529f2231555767e1818309ef0482e 192 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 31.15 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS12850 c61529f2231555767e1818309ef0482e 192 Gene3D G3DSA:3.90.950.10 2 192 2.6E-57 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y880_RS24125 85bab3916645c5caee1abbd75c97187e 464 Gene3D G3DSA:2.60.120.260 42 234 6.2E-6 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS24125 85bab3916645c5caee1abbd75c97187e 464 Pfam PF13163 Protein of unknown function (DUF3999) 31 456 2.9E-149 T 29-03-2018 IPR025060 Protein of unknown function DUF3999 Y880_RS25590 186da5be8e9f7e1958278f52dec4d0aa 312 SUPERFAMILY SSF53850 23 299 8.96E-77 T 29-03-2018 Y880_RS25590 186da5be8e9f7e1958278f52dec4d0aa 312 Gene3D G3DSA:3.40.190.10 147 312 5.0E-34 T 29-03-2018 Y880_RS25590 186da5be8e9f7e1958278f52dec4d0aa 312 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 22 310 5.3E-133 T 29-03-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 Y880_RS25590 186da5be8e9f7e1958278f52dec4d0aa 312 Gene3D G3DSA:3.40.190.10 22 146 1.2E-16 T 29-03-2018 Y880_RS25590 186da5be8e9f7e1958278f52dec4d0aa 312 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 30 283 3.1E-54 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Y880_RS17770 811c298834a610b8cea239732c0fc0e3 780 Gene3D G3DSA:3.60.10.10 455 768 1.3E-32 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS17770 811c298834a610b8cea239732c0fc0e3 780 SUPERFAMILY SSF56219 453 769 1.43E-36 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS17770 811c298834a610b8cea239732c0fc0e3 780 Pfam PF00932 Lamin Tail Domain 20 129 2.8E-15 T 29-03-2018 IPR001322 Lamin Tail Domain Y880_RS17770 811c298834a610b8cea239732c0fc0e3 780 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 458 761 5.0E-9 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS17770 811c298834a610b8cea239732c0fc0e3 780 Gene3D G3DSA:2.40.50.200 186 299 2.9E-6 T 29-03-2018 Y880_RS17770 811c298834a610b8cea239732c0fc0e3 780 Gene3D G3DSA:2.60.40.1260 19 129 3.1E-9 T 29-03-2018 IPR001322 Lamin Tail Domain Y880_RS24980 93ad2c68027b8a143f70f178f0ce3455 69 Pfam PF06945 Protein of unknown function (DUF1289) 16 61 1.9E-15 T 29-03-2018 IPR010710 Protein of unknown function DUF1289 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Gene3D G3DSA:3.30.930.10 485 690 1.1E-39 T 29-03-2018 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Gene3D G3DSA:3.50.40.10 196 394 2.7E-72 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SMART SM00896 698 791 1.9E-46 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Pfam PF03483 B3/4 domain 211 383 1.9E-70 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Gene3D G3DSA:3.30.70.380 694 791 3.0E-27 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SUPERFAMILY SSF54991 692 791 2.09E-32 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Pfam PF01588 Putative tRNA binding domain 45 144 1.2E-24 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SUPERFAMILY SSF55681 467 683 6.46E-54 T 29-03-2018 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SUPERFAMILY SSF50249 39 190 2.08E-49 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Gene3D G3DSA:2.40.50.140 38 141 1.6E-44 T 29-03-2018 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SMART SM00873 211 384 2.1E-95 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 1.1E-258 T 29-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 7.5E-31 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 46.892 T 29-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Gene3D G3DSA:3.30.56.10 142 183 6.6E-8 T 29-03-2018 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SUPERFAMILY SSF56037 195 392 2.88E-74 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SMART SM00874 402 471 4.0E-27 T 29-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Gene3D G3DSA:3.30.56.10 402 475 1.2E-21 T 29-03-2018 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 Pfam PF03484 tRNA synthetase B5 domain 405 471 6.2E-19 T 29-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Y880_RS11150 6e75da8e970bca4c31798b071c8306cd 792 SUPERFAMILY SSF46955 403 475 1.19E-17 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS22340 b565538431fb1b23d020d29b8090d5c0 159 SUPERFAMILY SSF74982 5 136 1.22E-50 T 29-03-2018 IPR023620 Small protein B Y880_RS22340 b565538431fb1b23d020d29b8090d5c0 159 Gene3D G3DSA:2.40.280.10 12 131 2.2E-46 T 29-03-2018 IPR023620 Small protein B Y880_RS22340 b565538431fb1b23d020d29b8090d5c0 159 TIGRFAM TIGR00086 smpB: SsrA-binding protein 12 154 2.0E-52 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 Y880_RS22340 b565538431fb1b23d020d29b8090d5c0 159 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 12 136 4.0E-68 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 Y880_RS22340 b565538431fb1b23d020d29b8090d5c0 159 Hamap MF_00023 SsrA-binding protein [smpB]. 1 159 71.799 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 Y880_RS22340 b565538431fb1b23d020d29b8090d5c0 159 Pfam PF01668 SmpB protein 12 154 1.9E-58 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 Y880_RS22340 b565538431fb1b23d020d29b8090d5c0 159 ProSitePatterns PS01317 SsrA-binding protein. 30 42 - T 29-03-2018 IPR020081 SsrA-binding protein, conserved site Y880_RS29985 8da77391f77377ae9f5bc0ff607600e9 493 SUPERFAMILY SSF52540 41 214 1.39E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS29985 8da77391f77377ae9f5bc0ff607600e9 493 Gene3D G3DSA:3.40.50.300 25 211 0.082 T 29-03-2018 Y880_RS29985 8da77391f77377ae9f5bc0ff607600e9 493 SMART SM00382 265 398 4.4E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS29985 8da77391f77377ae9f5bc0ff607600e9 493 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 269 395 4.8E-27 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS29985 8da77391f77377ae9f5bc0ff607600e9 493 Gene3D G3DSA:3.40.50.300 227 402 1.4E-29 T 29-03-2018 Y880_RS29985 8da77391f77377ae9f5bc0ff607600e9 493 SUPERFAMILY SSF52540 234 448 1.41E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS29985 8da77391f77377ae9f5bc0ff607600e9 493 Gene3D G3DSA:1.10.8.60 403 483 9.4E-9 T 29-03-2018 Y880_RS25105 62c28b87f8b64d690197b33f6ebb4102 190 Gene3D G3DSA:3.40.50.2020 3 188 2.5E-24 T 29-03-2018 Y880_RS25105 62c28b87f8b64d690197b33f6ebb4102 190 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 40.963 T 29-03-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 Y880_RS25105 62c28b87f8b64d690197b33f6ebb4102 190 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 188 1.9E-83 T 29-03-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 Y880_RS25105 62c28b87f8b64d690197b33f6ebb4102 190 SUPERFAMILY SSF53271 2 188 2.41E-45 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS25105 62c28b87f8b64d690197b33f6ebb4102 190 Pfam PF00156 Phosphoribosyl transferase domain 31 156 1.2E-7 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y880_RS00480 044a3c8b57a6c1120c90c1a535d8f9f8 248 Gene3D G3DSA:3.20.20.70 7 241 2.4E-103 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS00480 044a3c8b57a6c1120c90c1a535d8f9f8 248 SUPERFAMILY SSF63892 7 242 6.15E-97 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y880_RS00480 044a3c8b57a6c1120c90c1a535d8f9f8 248 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 9 242 1.4E-96 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y880_RS00480 044a3c8b57a6c1120c90c1a535d8f9f8 248 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 248 127.619 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y880_RS00480 044a3c8b57a6c1120c90c1a535d8f9f8 248 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 9 241 8.9E-102 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y880_RS00105 bb2681e7aa35c8cc5735b669ce5ee337 368 Pfam PF12849 PBP superfamily domain 21 313 1.5E-30 T 29-03-2018 IPR024370 PBP domain Y880_RS00105 bb2681e7aa35c8cc5735b669ce5ee337 368 SUPERFAMILY SSF53850 24 366 3.26E-70 T 29-03-2018 Y880_RS00105 bb2681e7aa35c8cc5735b669ce5ee337 368 Gene3D G3DSA:3.40.190.10 113 289 7.7E-33 T 29-03-2018 Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 SUPERFAMILY SSF56176 62 271 3.32E-35 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 Gene3D G3DSA:3.30.465.10 142 288 7.3E-12 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 Pfam PF09129 Cholesterol oxidase, substrate-binding 277 597 7.5E-159 T 29-03-2018 IPR015213 Cholesterol oxidase, substrate-binding Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 22 54 4.1E-5 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 Gene3D G3DSA:1.10.45.10 549 596 1.1E-17 T 29-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 Pfam PF01565 FAD binding domain 92 211 1.2E-12 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 Gene3D G3DSA:3.30.43.10 70 141 1.6E-14 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 SUPERFAMILY SSF55103 277 597 1.18E-159 T 29-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y880_RS18955 48167fc4b7f17aacfb142cb6a8d9e499 597 Gene3D G3DSA:3.40.462.10 289 547 9.6E-89 T 29-03-2018 IPR016170 Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 252 267 6.8E-18 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 267 278 6.8E-18 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 78 91 6.8E-18 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 233 245 6.8E-18 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 280 1.3E-31 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 16 282 2.9E-124 T 29-03-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Gene3D G3DSA:1.10.10.10 223 282 1.4E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 SUPERFAMILY SSF88659 197 282 3.18E-18 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 54.249 T 29-03-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Pfam PF04545 Sigma-70, region 4 229 279 1.1E-15 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 SUPERFAMILY SSF88946 15 123 2.09E-39 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Gene3D G3DSA:1.10.601.10 14 123 1.3E-34 T 29-03-2018 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Pfam PF00140 Sigma-70 factor, region 1.2 17 41 6.9E-6 T 29-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Pfam PF04542 Sigma-70 region 2 55 123 1.1E-15 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28535 d40ecc598d4fb6cca09f5e79fe0e32bb 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS16745 41f2fc27340a88180de06887232677d4 413 Pfam PF07690 Major Facilitator Superfamily 25 331 9.8E-28 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS16745 41f2fc27340a88180de06887232677d4 413 Gene3D G3DSA:1.20.1250.20 209 408 2.6E-17 T 29-03-2018 Y880_RS16745 41f2fc27340a88180de06887232677d4 413 SUPERFAMILY SSF103473 8 395 1.7E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS16745 41f2fc27340a88180de06887232677d4 413 Gene3D G3DSA:1.20.1250.20 15 193 2.4E-22 T 29-03-2018 Y880_RS21120 d5d04df6c8387db7f9cd224dcbc8dd24 314 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 38.006 T 29-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Y880_RS21120 d5d04df6c8387db7f9cd224dcbc8dd24 314 Pfam PF02401 LytB protein 3 283 1.5E-92 T 29-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Y880_RS21120 d5d04df6c8387db7f9cd224dcbc8dd24 314 Gene3D G3DSA:3.40.50.720 106 246 0.01 T 29-03-2018 Y880_RS21120 d5d04df6c8387db7f9cd224dcbc8dd24 314 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 5.2E-100 T 29-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Y880_RS19005 d2edbf89e71f49bb2773ed32f9369425 324 Pfam PF00676 Dehydrogenase E1 component 16 312 5.0E-98 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 Y880_RS19005 d2edbf89e71f49bb2773ed32f9369425 324 SUPERFAMILY SSF52518 4 324 7.86E-102 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS19005 d2edbf89e71f49bb2773ed32f9369425 324 Gene3D G3DSA:3.40.50.970 1 324 1.2E-89 T 29-03-2018 Y880_RS11095 684d5c5241855e525b5ccd41072aa5c9 1015 Gene3D G3DSA:3.60.110.10 719 987 4.6E-14 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS11095 684d5c5241855e525b5ccd41072aa5c9 1015 SUPERFAMILY SSF56317 753 979 2.62E-10 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS11095 684d5c5241855e525b5ccd41072aa5c9 1015 Gene3D G3DSA:3.30.70.270 182 332 3.5E-7 T 29-03-2018 Y880_RS11095 684d5c5241855e525b5ccd41072aa5c9 1015 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 170 308 5.2E-8 T 29-03-2018 IPR000477 Reverse transcriptase domain Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 Gene3D G3DSA:3.40.1020.10 339 515 3.2E-72 T 29-03-2018 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 Gene3D G3DSA:3.40.50.1100 147 322 5.5E-51 T 29-03-2018 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 330 420 9.5E-24 T 29-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 430 513 2.7E-25 T 29-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 16 513 2.5E-241 T 29-03-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 SUPERFAMILY SSF55021 421 513 2.75E-27 T 29-03-2018 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 SUPERFAMILY SSF53686 16 366 1.7E-103 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 Gene3D G3DSA:3.40.50.1100 40 146 4.4E-30 T 29-03-2018 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y880_RS03530 e71e3026872b40f9efbdf595cdf7377e 515 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 317 1.2E-81 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS26175 3512595aa0379fc87a64bf7768d54476 307 SUPERFAMILY SSF53807 25 304 7.85E-69 T 29-03-2018 Y880_RS26175 3512595aa0379fc87a64bf7768d54476 307 Gene3D G3DSA:3.40.50.1980 188 305 2.2E-20 T 29-03-2018 Y880_RS26175 3512595aa0379fc87a64bf7768d54476 307 Pfam PF01297 Zinc-uptake complex component A periplasmic 28 297 1.3E-51 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Y880_RS26175 3512595aa0379fc87a64bf7768d54476 307 Gene3D G3DSA:3.40.50.1980 25 187 2.4E-42 T 29-03-2018 Y880_RS29780 3832dc1e87b66a830bc405bce7b83097 149 Pfam PF16085 Bacteriophage holin Hol, superfamily III 33 145 8.4E-63 T 29-03-2018 IPR032128 Pyocin R2, holin Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 6.8E-15 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 6.8E-15 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 6.8E-15 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 SUPERFAMILY SSF46785 4 62 3.33E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 SMART SM00344 4 113 4.5E-38 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 1.3E-22 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 1.6E-18 T 29-03-2018 Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 Gene3D G3DSA:1.10.10.10 1 54 1.5E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 Gene3D G3DSA:3.30.70.920 57 148 5.4E-24 T 29-03-2018 Y880_RS08565 e2a523c485885e12328fcb3f16c988aa 153 SUPERFAMILY SSF54909 66 153 8.85E-20 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 1.4E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SUPERFAMILY SSF46785 5 75 2.57E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SUPERFAMILY SSF48008 78 215 3.66E-9 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SMART SM00345 13 71 5.4E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Pfam PF07729 FCD domain 88 202 3.8E-10 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Gene3D G3DSA:1.20.120.530 74 219 3.4E-17 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SMART SM00895 81 207 0.0076 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS04605 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Gene3D G3DSA:1.10.10.10 1 73 5.4E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 SUPERFAMILY SSF46894 136 233 5.39E-22 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 Pfam PF00072 Response regulator receiver domain 8 120 5.5E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 SUPERFAMILY SSF52172 4 129 1.99E-42 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 Gene3D G3DSA:1.10.10.10 127 238 8.7E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 Gene3D G3DSA:3.40.50.2300 2 126 2.0E-36 T 29-03-2018 Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 SMART SM00862 156 232 1.3E-15 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS13980 eb4aaa960397cf4ef27582c3eb7f9a31 242 SMART SM00448 6 119 1.5E-43 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS30005 6565911d4e8a5b0cdf4e8401575290dd 140 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 2 140 1.2E-49 T 29-03-2018 IPR005265 Uncharacterised protein family UPF0093 Y880_RS30005 6565911d4e8a5b0cdf4e8401575290dd 140 PIRSF PIRSF004638 1 140 3.6E-62 T 29-03-2018 IPR005265 Uncharacterised protein family UPF0093 Y880_RS30005 6565911d4e8a5b0cdf4e8401575290dd 140 Pfam PF03653 Uncharacterised protein family (UPF0093) 1 140 1.2E-56 T 29-03-2018 IPR005265 Uncharacterised protein family UPF0093 Y880_RS20185 11f0a0eeeff2d6662967efbb317f4dcc 227 SUPERFAMILY SSF53335 11 224 1.31E-27 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS20185 11f0a0eeeff2d6662967efbb317f4dcc 227 Gene3D G3DSA:3.40.50.150 8 221 2.5E-22 T 29-03-2018 Y880_RS20185 11f0a0eeeff2d6662967efbb317f4dcc 227 Pfam PF13649 Methyltransferase domain 56 151 2.3E-13 T 29-03-2018 Y880_RS23490 106d4d26ac544b085948b78784428868 391 Gene3D G3DSA:3.50.50.60 6 329 8.6E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23490 106d4d26ac544b085948b78784428868 391 Pfam PF01266 FAD dependent oxidoreductase 8 314 2.3E-19 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS23490 106d4d26ac544b085948b78784428868 391 SUPERFAMILY SSF51905 7 222 5.83E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23490 106d4d26ac544b085948b78784428868 391 SUPERFAMILY SSF51905 252 289 5.83E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS29110 60705d0f06021c9201519d2ceb20e2c2 171 PIRSF PIRSF028103 1 171 5.1E-56 T 29-03-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 Y880_RS29110 60705d0f06021c9201519d2ceb20e2c2 171 Pfam PF01842 ACT domain 96 125 5.3E-7 T 29-03-2018 IPR002912 ACT domain Y880_RS29110 60705d0f06021c9201519d2ceb20e2c2 171 Pfam PF13740 ACT domain 3 65 1.0E-11 T 29-03-2018 Y880_RS29110 60705d0f06021c9201519d2ceb20e2c2 171 Gene3D G3DSA:3.30.70.260 2 80 4.6E-13 T 29-03-2018 Y880_RS29110 60705d0f06021c9201519d2ceb20e2c2 171 SUPERFAMILY SSF55021 87 168 1.47E-17 T 29-03-2018 Y880_RS29110 60705d0f06021c9201519d2ceb20e2c2 171 SUPERFAMILY SSF55021 1 67 4.2E-14 T 29-03-2018 Y880_RS29110 60705d0f06021c9201519d2ceb20e2c2 171 Gene3D G3DSA:3.30.70.260 85 171 8.4E-15 T 29-03-2018 Y880_RS17030 e062a788c27d06d56d2408671c397d2a 230 Gene3D G3DSA:1.20.1250.20 37 219 4.8E-21 T 29-03-2018 Y880_RS17030 e062a788c27d06d56d2408671c397d2a 230 Pfam PF07690 Major Facilitator Superfamily 70 217 1.6E-12 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS17030 e062a788c27d06d56d2408671c397d2a 230 SUPERFAMILY SSF103473 8 220 2.22E-26 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS02150 8d747360fbc9aafe721718c73b011817 233 PIRSF PIRSF039137 1 233 3.7E-104 T 29-03-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Y880_RS02150 8d747360fbc9aafe721718c73b011817 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS02150 8d747360fbc9aafe721718c73b011817 233 SUPERFAMILY SSF52540 2 231 2.02E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02150 8d747360fbc9aafe721718c73b011817 233 Pfam PF00005 ABC transporter 17 161 3.1E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS02150 8d747360fbc9aafe721718c73b011817 233 SMART SM00382 26 212 3.9E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS02150 8d747360fbc9aafe721718c73b011817 233 Gene3D G3DSA:3.40.50.300 1 232 6.1E-60 T 29-03-2018 Y880_RS23375 3bd00af7902e49913b3a19e70a35af89 272 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 203 258 8.0E-26 T 29-03-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 Y880_RS23375 3bd00af7902e49913b3a19e70a35af89 272 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 14 258 41.647 T 29-03-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 Y880_RS23375 3bd00af7902e49913b3a19e70a35af89 272 SUPERFAMILY SSF56300 16 267 2.47E-54 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS23375 3bd00af7902e49913b3a19e70a35af89 272 Gene3D G3DSA:3.60.21.10 1 264 1.1E-36 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS23375 3bd00af7902e49913b3a19e70a35af89 272 Pfam PF00149 Calcineurin-like phosphoesterase 17 203 2.3E-12 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 SUPERFAMILY SSF90123 31 343 2.88E-48 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 Gene3D G3DSA:3.40.50.300 345 606 2.4E-73 T 29-03-2018 Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 ProSitePatterns PS00211 ABC transporters family signature. 504 518 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 SUPERFAMILY SSF52540 351 602 2.66E-86 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 SMART SM00382 387 578 1.1E-22 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 Gene3D G3DSA:1.20.1560.10 16 340 2.9E-33 T 29-03-2018 Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 Pfam PF00005 ABC transporter 379 532 2.0E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS14165 e41367e78ff8b1824c3bc3c5685d958c 610 Pfam PF00664 ABC transporter transmembrane region 42 301 1.2E-14 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 SMART SM00864 13 205 1.9E-113 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 Gene3D G3DSA:3.40.50.1440 8 214 8.5E-42 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 29-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 366 37.72 T 29-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 4.1E-40 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 Pfam PF12327 FtsZ family, C-terminal domain 222 316 7.1E-36 T 29-03-2018 IPR024757 Cell division protein FtsZ, C-terminal Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 Gene3D G3DSA:3.30.1330.20 215 325 2.6E-43 T 29-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 29-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 9 328 2.4E-127 T 29-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 SMART SM00865 207 325 3.0E-57 T 29-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 SUPERFAMILY SSF55307 204 319 3.89E-42 T 29-03-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 SUPERFAMILY SSF52490 13 208 5.89E-69 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 98 118 3.9E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 189 211 3.9E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 212 233 3.9E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS20335 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 126 147 3.9E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y880_RS08825 01ae0051a8b156659d9e97827034024f 468 Gene3D G3DSA:3.40.190.10 146 335 8.6E-22 T 29-03-2018 Y880_RS08825 01ae0051a8b156659d9e97827034024f 468 Gene3D G3DSA:3.40.190.10 19 145 1.3E-10 T 29-03-2018 Y880_RS08825 01ae0051a8b156659d9e97827034024f 468 SUPERFAMILY SSF160387 372 465 3.66E-14 T 29-03-2018 Y880_RS08825 01ae0051a8b156659d9e97827034024f 468 SUPERFAMILY SSF53850 58 326 4.08E-36 T 29-03-2018 Y880_RS08825 01ae0051a8b156659d9e97827034024f 468 Pfam PF13379 NMT1-like family 24 267 1.4E-14 T 29-03-2018 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 SUPERFAMILY SSF55874 365 523 5.5E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 SMART SM00091 196 260 9.1E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 Gene3D G3DSA:3.30.565.10 373 526 6.8E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 Gene3D G3DSA:1.10.287.130 302 371 7.3E-16 T 29-03-2018 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 SMART SM00388 309 375 2.0E-17 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 417 523 2.0E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 3.9E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 486 3.9E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 3.9E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 Gene3D G3DSA:3.30.450.20 180 301 2.4E-6 T 29-03-2018 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 SMART SM00387 416 527 1.1E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 Pfam PF00512 His Kinase A (phospho-acceptor) domain 310 374 8.4E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS21065 2ac0107295a97bfe3c1ecd51136ff7f2 530 SUPERFAMILY SSF47384 298 372 1.77E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 SMART SM00421 143 200 2.8E-20 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 198 1.4E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 SMART SM00448 3 117 1.8E-16 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 Pfam PF00072 Response regulator receiver domain 5 117 7.7E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 Gene3D G3DSA:3.40.50.2300 2 130 3.4E-23 T 29-03-2018 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 SUPERFAMILY SSF52172 3 127 8.97E-23 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 Gene3D G3DSA:1.10.10.10 137 207 8.2E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 SUPERFAMILY SSF46894 136 201 2.38E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 9.1E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 9.1E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03920 936090ec89f41b4d10085c50d08f43f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 9.1E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 12 602 9.0E-257 T 29-03-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Gene3D G3DSA:1.10.10.60 404 449 8.9E-14 T 29-03-2018 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Pfam PF00364 Biotin-requiring enzyme 540 605 2.4E-17 T 29-03-2018 IPR000089 Biotin/lipoyl attachment Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 SUPERFAMILY SSF51569 5 305 6.04E-90 T 29-03-2018 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Pfam PF00682 HMGL-like 12 273 1.1E-50 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 SUPERFAMILY SSF51230 532 605 2.36E-21 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Pfam PF02436 Conserved carboxylase domain 297 488 7.0E-57 T 29-03-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Gene3D G3DSA:2.40.50.100 529 607 1.7E-19 T 29-03-2018 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Gene3D G3DSA:3.20.20.70 3 289 1.3E-76 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS25835 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 SUPERFAMILY SSF89000 302 452 1.61E-51 T 29-03-2018 Y880_RS00190 08b5ba9611be35247e9213c5422bea56 464 Pfam PF01425 Amidase 28 442 1.4E-89 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS00190 08b5ba9611be35247e9213c5422bea56 464 SUPERFAMILY SSF75304 2 451 2.09E-123 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS00190 08b5ba9611be35247e9213c5422bea56 464 Gene3D G3DSA:3.90.1300.10 1 462 8.1E-123 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS00045 59bd22079acb328c6403f46b487eaefb 319 PIRSF PIRSF018266 5 318 2.5E-71 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS00045 59bd22079acb328c6403f46b487eaefb 319 Pfam PF16220 Domain of unknown function (DUF4880) 17 57 1.5E-11 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS00045 59bd22079acb328c6403f46b487eaefb 319 Pfam PF04773 FecR protein 115 208 2.5E-14 T 29-03-2018 IPR006860 FecR protein Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 Gene3D G3DSA:3.40.50.20 1 117 3.4E-49 T 29-03-2018 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 Gene3D G3DSA:3.30.1490.20 118 203 2.7E-21 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 Gene3D G3DSA:3.30.470.20 204 443 3.2E-95 T 29-03-2018 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 SMART SM00878 334 440 1.2E-61 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 2 443 5.1E-190 T 29-03-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 320 2.4E-73 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 109 1.1E-42 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 SUPERFAMILY SSF56059 82 346 1.1E-67 T 29-03-2018 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 Pfam PF02785 Biotin carboxylase C-terminal domain 334 440 5.8E-41 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 SUPERFAMILY SSF51246 329 445 3.09E-43 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y880_RS25840 23417921b32004da26d70710c9d4dc01 471 SUPERFAMILY SSF52440 1 112 7.91E-45 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS25220 75e3538f3cb74b472ef9a4728f71a47a 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 150 1.7E-47 T 29-03-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|Reactome: R-HSA-499943 Y880_RS25220 75e3538f3cb74b472ef9a4728f71a47a 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 33.215 T 29-03-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|Reactome: R-HSA-499943 Y880_RS25220 75e3538f3cb74b472ef9a4728f71a47a 151 SUPERFAMILY SSF51283 2 149 1.57E-52 T 29-03-2018 IPR029054 dUTPase-like Y880_RS25220 75e3538f3cb74b472ef9a4728f71a47a 151 Pfam PF00692 dUTPase 17 149 5.2E-40 T 29-03-2018 IPR029054 dUTPase-like Y880_RS25220 75e3538f3cb74b472ef9a4728f71a47a 151 Gene3D G3DSA:2.70.40.10 116 150 4.1E-14 T 29-03-2018 Y880_RS25220 75e3538f3cb74b472ef9a4728f71a47a 151 Gene3D G3DSA:2.70.40.10 3 115 6.2E-39 T 29-03-2018 Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 SUPERFAMILY SSF82861 25 107 2.88E-16 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 SUPERFAMILY SSF82689 177 272 2.35E-26 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 Pfam PF00924 Mechanosensitive ion channel 67 262 1.5E-49 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 Gene3D G3DSA:2.30.30.60 124 173 3.2E-16 T 29-03-2018 Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 138 172 - T 29-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 Gene3D G3DSA:3.30.70.100 174 267 5.9E-23 T 29-03-2018 Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 SUPERFAMILY SSF50182 109 174 5.89E-18 T 29-03-2018 IPR010920 LSM domain Y880_RS20265 71f85ae38e8f141da3031470263717ca 278 Pfam PF05552 Conserved TM helix 15 59 2.8E-7 T 29-03-2018 IPR008910 Conserved TM helix Y880_RS17810 71576fb27b3d1c9fd5fbd53f9dc8ea53 83 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 83 6.6E-19 T 29-03-2018 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 Reactome: R-HSA-947581 Y880_RS17810 71576fb27b3d1c9fd5fbd53f9dc8ea53 83 SUPERFAMILY SSF54285 1 83 7.66E-22 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y880_RS17810 71576fb27b3d1c9fd5fbd53f9dc8ea53 83 Pfam PF02597 ThiS family 4 83 3.2E-19 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 Y880_RS17810 71576fb27b3d1c9fd5fbd53f9dc8ea53 83 Gene3D G3DSA:3.10.20.30 1 83 5.1E-18 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS11105 9b8af701ce3ac970f533b69f5a8a8f45 330 PIRSF PIRSF031853 1 330 1.9E-139 T 29-03-2018 IPR016984 Uncharacterised conserved protein UCP031853 Y880_RS11105 9b8af701ce3ac970f533b69f5a8a8f45 330 Gene3D G3DSA:3.40.1350.10 182 313 4.4E-21 T 29-03-2018 Y880_RS11105 9b8af701ce3ac970f533b69f5a8a8f45 330 SUPERFAMILY SSF52980 196 309 1.93E-11 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y880_RS11105 9b8af701ce3ac970f533b69f5a8a8f45 330 Pfam PF04471 Restriction endonuclease 193 304 1.1E-23 T 29-03-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 Y880_RS17505 1d6eab796aa9f74415fc76681840961b 340 Gene3D G3DSA:3.40.190.10 25 139 2.2E-20 T 29-03-2018 Y880_RS17505 1d6eab796aa9f74415fc76681840961b 340 Gene3D G3DSA:3.40.190.10 140 224 5.8E-13 T 29-03-2018 Y880_RS17505 1d6eab796aa9f74415fc76681840961b 340 SMART SM00062 35 257 5.8E-44 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17505 1d6eab796aa9f74415fc76681840961b 340 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 249 7.5E-30 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17505 1d6eab796aa9f74415fc76681840961b 340 SUPERFAMILY SSF53850 26 255 3.46E-46 T 29-03-2018 Y880_RS17505 1d6eab796aa9f74415fc76681840961b 340 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 Y880_RS05025 dfdbc04fa4ab09e79c06d3f119aceb8b 241 Pfam PF01738 Dienelactone hydrolase family 29 239 6.3E-41 T 29-03-2018 IPR002925 Dienelactone hydrolase GO:0016787 Y880_RS05025 dfdbc04fa4ab09e79c06d3f119aceb8b 241 Gene3D G3DSA:3.40.50.1820 1 238 6.1E-25 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05025 dfdbc04fa4ab09e79c06d3f119aceb8b 241 SUPERFAMILY SSF53474 6 238 1.39E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS22080 6b4e98327eb99553c4bbd656ca75c4a4 235 Pfam PF03749 Sugar fermentation stimulation protein 13 226 2.5E-72 T 29-03-2018 IPR005224 Sugar fermentation stimulation protein Y880_RS22080 6b4e98327eb99553c4bbd656ca75c4a4 235 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 235 56.604 T 29-03-2018 IPR005224 Sugar fermentation stimulation protein Y880_RS22080 6b4e98327eb99553c4bbd656ca75c4a4 235 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 5 233 3.6E-64 T 29-03-2018 IPR005224 Sugar fermentation stimulation protein Y880_RS08700 02bc9adbb8dcd005d60c73ad26be226f 565 SUPERFAMILY SSF56519 49 216 2.09E-37 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y880_RS08700 02bc9adbb8dcd005d60c73ad26be226f 565 Gene3D G3DSA:3.90.1310.10 22 217 9.2E-37 T 29-03-2018 Y880_RS08700 02bc9adbb8dcd005d60c73ad26be226f 565 SUPERFAMILY SSF56601 217 545 1.31E-87 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS08700 02bc9adbb8dcd005d60c73ad26be226f 565 Pfam PF00905 Penicillin binding protein transpeptidase domain 242 538 5.6E-81 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y880_RS08700 02bc9adbb8dcd005d60c73ad26be226f 565 Gene3D G3DSA:3.40.710.10 218 564 5.1E-81 T 29-03-2018 Y880_RS08700 02bc9adbb8dcd005d60c73ad26be226f 565 Pfam PF03717 Penicillin-binding Protein dimerisation domain 53 201 1.0E-11 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y880_RS16690 4ee703f37e60f67c8e5aefb0435e4484 171 SUPERFAMILY SSF50341 17 158 2.35E-25 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS16690 4ee703f37e60f67c8e5aefb0435e4484 171 Gene3D G3DSA:2.40.50.180 33 116 3.3E-16 T 29-03-2018 Y880_RS16690 4ee703f37e60f67c8e5aefb0435e4484 171 SMART SM00260 12 153 1.1E-10 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS16690 4ee703f37e60f67c8e5aefb0435e4484 171 Pfam PF01584 CheW-like domain 17 155 8.9E-25 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS29830 bd32a9a3ddcff544ff20c9121a7bc899 114 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 20 94 3.2E-18 T 29-03-2018 IPR019289 Bacteriophage tail protein Gp41, putative Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 Gene3D G3DSA:3.50.50.60 2 128 7.5E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 270 8.7E-13 T 29-03-2018 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 8.7E-13 T 29-03-2018 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 8.7E-13 T 29-03-2018 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 284 3.2E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 101 109 2.9E-13 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 123 135 2.9E-13 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 258 276 2.9E-13 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 2.9E-13 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 Gene3D G3DSA:3.50.50.60 129 297 7.6E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS03750 886d282760fa8b7a50983d1fb6ceeb2c 297 SUPERFAMILY SSF51905 1 292 1.56E-32 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 Pfam PF00005 ABC transporter 504 653 1.1E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 Gene3D G3DSA:3.40.50.300 476 719 2.1E-62 T 29-03-2018 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 Gene3D G3DSA:1.20.1560.10 149 472 4.1E-37 T 29-03-2018 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 SUPERFAMILY SSF52540 483 709 3.27E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 SMART SM00382 513 697 1.3E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 Pfam PF00664 ABC transporter transmembrane region 175 436 1.7E-38 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 Gene3D G3DSA:3.90.70.10 17 148 2.9E-41 T 29-03-2018 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 Pfam PF03412 Peptidase C39 family 15 143 4.3E-37 T 29-03-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 SUPERFAMILY SSF90123 163 469 1.11E-56 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS18970 e7a7617665bbd96d2eebf210e34772a1 719 ProSitePatterns PS00211 ABC transporters family signature. 625 639 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS00705 7b6f0fce743a5ae707e7adc5e0f684e5 141 SUPERFAMILY SSF54593 6 131 2.95E-25 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS00705 7b6f0fce743a5ae707e7adc5e0f684e5 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 129 3.2E-8 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS00705 7b6f0fce743a5ae707e7adc5e0f684e5 141 Gene3D G3DSA:3.10.180.10 4 132 7.8E-20 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 Gene3D G3DSA:1.10.10.60 142 200 7.2E-12 T 29-03-2018 Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 Pfam PF12833 Helix-turn-helix domain 169 247 1.0E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 Gene3D G3DSA:1.10.10.60 201 253 5.9E-16 T 29-03-2018 Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 SUPERFAMILY SSF51182 17 130 1.06E-6 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 Gene3D G3DSA:2.60.120.10 10 71 8.9E-5 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 SUPERFAMILY SSF46689 152 196 9.68E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 SMART SM00342 163 246 1.5E-28 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 SUPERFAMILY SSF46689 199 249 1.7E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 230 5.1E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS14125 840601bd7511eee4a915da504fc191f0 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 246 5.1E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS23005 f972e60b373e54dc58f82b33ec162451 417 Pfam PF03573 outer membrane porin, OprD family 31 416 1.4E-148 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS23005 f972e60b373e54dc58f82b33ec162451 417 Gene3D G3DSA:2.40.160.10 1 416 3.2E-113 T 29-03-2018 Y880_RS21980 92f3e68393dc858965b390dabab0acd1 520 Gene3D G3DSA:3.90.1200.10 121 334 3.3E-15 T 29-03-2018 Y880_RS21980 92f3e68393dc858965b390dabab0acd1 520 SUPERFAMILY SSF52540 339 516 4.72E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21980 92f3e68393dc858965b390dabab0acd1 520 SUPERFAMILY SSF56112 12 294 4.96E-24 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS21980 92f3e68393dc858965b390dabab0acd1 520 Pfam PF01636 Phosphotransferase enzyme family 123 279 1.0E-5 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS21980 92f3e68393dc858965b390dabab0acd1 520 Pfam PF13671 AAA domain 338 487 1.0E-37 T 29-03-2018 Y880_RS21980 92f3e68393dc858965b390dabab0acd1 520 Gene3D G3DSA:3.40.50.300 338 493 6.9E-14 T 29-03-2018 Y880_RS18665 5322b4dc2d4bcf9fe9369833eb31c8a9 835 Pfam PF00577 Outer membrane usher protein 178 734 1.3E-155 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 Y880_RS18665 5322b4dc2d4bcf9fe9369833eb31c8a9 835 Pfam PF13954 PapC N-terminal domain 10 163 4.5E-36 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 Y880_RS18665 5322b4dc2d4bcf9fe9369833eb31c8a9 835 SUPERFAMILY SSF141729 8 136 1.44E-23 T 29-03-2018 Y880_RS18665 5322b4dc2d4bcf9fe9369833eb31c8a9 835 Pfam PF13953 PapC C-terminal domain 745 809 7.8E-19 T 29-03-2018 IPR025949 PapC-like, C-terminal domain Y880_RS14915 c9899dc0afe2c9ce4a75e2b2bc67e558 346 Pfam PF00795 Carbon-nitrogen hydrolase 22 267 3.3E-53 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS14915 c9899dc0afe2c9ce4a75e2b2bc67e558 346 SUPERFAMILY SSF56317 12 275 4.71E-56 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS14915 c9899dc0afe2c9ce4a75e2b2bc67e558 346 Hamap MF_01242 Aliphatic amidase [amiE]. 1 340 87.691 T 29-03-2018 IPR023719 Aliphatic amidase GO:0004040 KEGG: 00330+3.5.1.4|KEGG: 00360+3.5.1.4|KEGG: 00380+3.5.1.4|KEGG: 00627+3.5.1.4|KEGG: 00643+3.5.1.4|MetaCyc: PWY-3161|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 Y880_RS14915 c9899dc0afe2c9ce4a75e2b2bc67e558 346 Gene3D G3DSA:3.60.110.10 1 345 1.1E-67 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS13395 48267996ae0a590c2d78a33d0eeb0c8c 431 SUPERFAMILY SSF55874 306 427 8.7E-12 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13395 48267996ae0a590c2d78a33d0eeb0c8c 431 SMART SM00388 235 299 7.4E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13395 48267996ae0a590c2d78a33d0eeb0c8c 431 SMART SM00387 339 430 0.0054 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13395 48267996ae0a590c2d78a33d0eeb0c8c 431 SUPERFAMILY SSF47384 218 295 1.77E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13395 48267996ae0a590c2d78a33d0eeb0c8c 431 Gene3D G3DSA:3.30.565.10 304 431 4.3E-12 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13395 48267996ae0a590c2d78a33d0eeb0c8c 431 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 297 2.6E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13395 48267996ae0a590c2d78a33d0eeb0c8c 431 Gene3D G3DSA:1.10.287.130 226 295 5.3E-12 T 29-03-2018 Y880_RS05005 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 Gene3D G3DSA:3.10.129.10 1 141 1.9E-22 T 29-03-2018 Y880_RS05005 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 112 2.4E-12 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS05005 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 SUPERFAMILY SSF54637 1 139 6.87E-27 T 29-03-2018 IPR029069 HotDog domain Y880_RS05005 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 Pfam PF03061 Thioesterase superfamily 52 127 3.0E-10 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS03460 e2dd78eebc6f99658e836b4b23fe6782 452 Gene3D G3DSA:1.20.1250.20 3 194 1.8E-27 T 29-03-2018 Y880_RS03460 e2dd78eebc6f99658e836b4b23fe6782 452 Pfam PF07690 Major Facilitator Superfamily 12 401 1.7E-39 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS03460 e2dd78eebc6f99658e836b4b23fe6782 452 SUPERFAMILY SSF103473 239 441 1.7E-50 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03460 e2dd78eebc6f99658e836b4b23fe6782 452 SUPERFAMILY SSF103473 6 188 1.7E-50 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03460 e2dd78eebc6f99658e836b4b23fe6782 452 Gene3D G3DSA:1.20.1250.20 250 442 8.8E-19 T 29-03-2018 Y880_RS25495 c6bab9b1952d31a54654f03d6638333a 438 Gene3D G3DSA:1.20.1250.20 20 235 2.2E-24 T 29-03-2018 Y880_RS25495 c6bab9b1952d31a54654f03d6638333a 438 Gene3D G3DSA:1.20.1250.20 238 436 1.1E-17 T 29-03-2018 Y880_RS25495 c6bab9b1952d31a54654f03d6638333a 438 Pfam PF00083 Sugar (and other) transporter 27 237 2.2E-20 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS25495 c6bab9b1952d31a54654f03d6638333a 438 SUPERFAMILY SSF103473 7 426 1.96E-60 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS22875 a9d99ab3c6ad39b0857a3677c9a1ecad 287 SUPERFAMILY SSF51621 8 283 8.07E-67 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS22875 a9d99ab3c6ad39b0857a3677c9a1ecad 287 Hamap MF_01299 Oxaloacetate decarboxylase. 4 287 48.662 T 29-03-2018 IPR023687 Oxaloacetate decarboxylase, bacterial GO:0008948 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Y880_RS22875 a9d99ab3c6ad39b0857a3677c9a1ecad 287 Pfam PF13714 Phosphoenolpyruvate phosphomutase 13 247 1.2E-43 T 29-03-2018 Y880_RS22875 a9d99ab3c6ad39b0857a3677c9a1ecad 287 Gene3D G3DSA:3.20.20.60 1 287 5.5E-67 T 29-03-2018 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 SUPERFAMILY SSF53067 5 192 5.83E-65 T 29-03-2018 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 6 17 6.4E-43 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 374 386 6.4E-43 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 200 221 6.4E-43 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 170 183 6.4E-43 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 319 335 6.4E-43 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 297 310 6.4E-43 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 TIGRFAM TIGR00016 ackA: acetate kinase 3 392 5.2E-133 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PIRSF PIRSF000722 2 394 4.6E-131 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 SUPERFAMILY SSF53067 153 393 1.11E-82 T 29-03-2018 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Pfam PF00871 Acetokinase family 6 386 4.1E-133 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Hamap MF_00020 Acetate kinase [ackA]. 1 394 169.52 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Gene3D G3DSA:3.30.420.40 194 394 3.1E-70 T 29-03-2018 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 29-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y880_RS00925 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Gene3D G3DSA:3.30.420.40 5 191 2.0E-69 T 29-03-2018 Y880_RS07960 516dd760a19140f162c86c971da721ca 163 Pfam PF02308 MgtC family 31 154 3.1E-35 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS07960 516dd760a19140f162c86c971da721ca 163 PRINTS PR01837 MgtC/SapB protein signature 109 133 2.9E-37 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS07960 516dd760a19140f162c86c971da721ca 163 PRINTS PR01837 MgtC/SapB protein signature 34 53 2.9E-37 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS07960 516dd760a19140f162c86c971da721ca 163 PRINTS PR01837 MgtC/SapB protein signature 53 71 2.9E-37 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS07960 516dd760a19140f162c86c971da721ca 163 PRINTS PR01837 MgtC/SapB protein signature 80 102 2.9E-37 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 1.9E-69 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 1.9E-69 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 1.9E-69 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 1.9E-69 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 1.9E-69 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 1.9E-69 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 SUPERFAMILY SSF55681 10 291 1.57E-136 T 29-03-2018 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 299 1.6E-162 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 291 1.7E-152 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 61.704 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 Gene3D G3DSA:1.20.58.180 218 294 2.7E-33 T 29-03-2018 Y880_RS26630 9c5e64ae51abacc04b9793a3ffdb9532 315 Gene3D G3DSA:3.30.930.10 1 216 3.8E-91 T 29-03-2018 Y880_RS17950 b819fc2e342dc22f82199ad1b934cc0e 138 Gene3D G3DSA:3.40.109.10 13 138 2.0E-19 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS17950 b819fc2e342dc22f82199ad1b934cc0e 138 SUPERFAMILY SSF55469 21 123 3.43E-9 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS25315 a9a48ce641746a8bdcf84bed6c2c4408 126 Pfam PF01042 Endoribonuclease L-PSP 9 124 5.1E-43 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS25315 a9a48ce641746a8bdcf84bed6c2c4408 126 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 29-03-2018 IPR019897 RidA, conserved site Y880_RS25315 a9a48ce641746a8bdcf84bed6c2c4408 126 Gene3D G3DSA:3.30.1330.40 1 126 8.8E-48 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS25315 a9a48ce641746a8bdcf84bed6c2c4408 126 SUPERFAMILY SSF55298 1 125 3.93E-46 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS25315 a9a48ce641746a8bdcf84bed6c2c4408 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 2.3E-53 T 29-03-2018 IPR006056 RidA family Y880_RS18085 b20d13b8119766d3dfe2d1d7722add43 189 SUPERFAMILY SSF55120 10 187 1.26E-44 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS18085 b20d13b8119766d3dfe2d1d7722add43 189 Gene3D G3DSA:3.30.70.1560 90 171 3.1E-27 T 29-03-2018 Y880_RS18085 b20d13b8119766d3dfe2d1d7722add43 189 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 46 60 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y880_RS18085 b20d13b8119766d3dfe2d1d7722add43 189 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 15 184 2.5E-58 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y880_RS18085 b20d13b8119766d3dfe2d1d7722add43 189 Pfam PF00849 RNA pseudouridylate synthase 11 155 8.0E-16 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS18085 b20d13b8119766d3dfe2d1d7722add43 189 Gene3D G3DSA:3.30.70.580 6 89 6.9E-18 T 29-03-2018 Y880_RS13580 edd59e90a816a977fbf94caf0895de21 429 TIGRFAM TIGR01499 folC: bifunctional protein FolC 25 420 1.7E-92 T 29-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Y880_RS13580 edd59e90a816a977fbf94caf0895de21 429 SUPERFAMILY SSF53244 286 422 2.75E-26 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS13580 edd59e90a816a977fbf94caf0895de21 429 Gene3D G3DSA:3.40.1190.10 1 285 1.5E-75 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS13580 edd59e90a816a977fbf94caf0895de21 429 Pfam PF08245 Mur ligase middle domain 47 186 2.6E-11 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS13580 edd59e90a816a977fbf94caf0895de21 429 SUPERFAMILY SSF53623 3 283 5.49E-87 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS13580 edd59e90a816a977fbf94caf0895de21 429 Gene3D G3DSA:3.90.190.20 286 429 3.1E-22 T 29-03-2018 Y880_RS13580 edd59e90a816a977fbf94caf0895de21 429 PIRSF PIRSF001563 1 426 9.3E-101 T 29-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 SUPERFAMILY SSF48498 87 195 4.0E-14 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 63 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 4.7E-16 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 SUPERFAMILY SSF46689 11 91 1.41E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 7.7E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 7.7E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 Gene3D G3DSA:1.10.357.10 87 198 2.9E-10 T 29-03-2018 Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 Gene3D G3DSA:1.10.10.60 5 41 5.3E-13 T 29-03-2018 Y880_RS12395 bb30523f53f2926f9e18079a78acf73c 198 Gene3D G3DSA:1.10.260.40 42 86 1.6E-12 T 29-03-2018 Y880_RS11895 a6cff9540edf95a580cbbc31e5ed7bc3 485 Gene3D G3DSA:1.20.1170.10 29 232 5.9E-7 T 29-03-2018 Y880_RS11895 a6cff9540edf95a580cbbc31e5ed7bc3 485 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 2 475 4.9E-190 T 29-03-2018 IPR021207 Integrating conjugative element protein, PFL4705 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 Pfam PF00206 Lyase 17 298 2.6E-41 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 Pfam PF10397 Adenylosuccinate lyase C-terminus 367 442 1.4E-16 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 Gene3D G3DSA:1.10.275.10 4 104 1.2E-17 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 SUPERFAMILY SSF48557 11 445 7.23E-116 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 SMART SM00998 366 445 2.4E-25 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00149 Fumarate lyase superfamily signature 277 293 8.6E-24 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 8.6E-24 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00149 Fumarate lyase superfamily signature 147 165 8.6E-24 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00149 Fumarate lyase superfamily signature 102 120 8.6E-24 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 ProSitePatterns PS00163 Fumarate lyases signature. 277 286 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 15 444 2.2E-99 T 29-03-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 Gene3D G3DSA:1.10.40.30 374 444 3.7E-20 T 29-03-2018 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00145 Argininosuccinate lyase family signature 277 293 2.4E-10 T 29-03-2018 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 2.4E-10 T 29-03-2018 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00145 Argininosuccinate lyase family signature 101 123 2.4E-10 T 29-03-2018 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 PRINTS PR00145 Argininosuccinate lyase family signature 142 162 2.4E-10 T 29-03-2018 Y880_RS15700 3af3899a25986f041ac92ebd64b8360f 477 Gene3D G3DSA:1.20.200.10 105 373 2.0E-74 T 29-03-2018 Y880_RS22510 79431ce8707cfdcb9083203715480d3f 240 Gene3D G3DSA:3.60.110.10 2 238 6.9E-48 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS22510 79431ce8707cfdcb9083203715480d3f 240 SUPERFAMILY SSF56317 4 234 1.57E-46 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS22510 79431ce8707cfdcb9083203715480d3f 240 Pfam PF00795 Carbon-nitrogen hydrolase 4 231 1.5E-23 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS21155 a4041d29f3bd2b2423d85998f8e74521 154 Pfam PF05981 CreA protein 23 150 2.6E-59 T 29-03-2018 IPR010292 Uncharacterised protein family CreA Y880_RS21155 a4041d29f3bd2b2423d85998f8e74521 154 PIRSF PIRSF003174 1 154 1.5E-69 T 29-03-2018 IPR010292 Uncharacterised protein family CreA Y880_RS28760 2b34e64d329bdf412264a2cb4a6b8a07 240 Gene3D G3DSA:3.40.1280.10 73 240 1.9E-61 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y880_RS28760 2b34e64d329bdf412264a2cb4a6b8a07 240 SUPERFAMILY SSF88697 3 69 4.97E-16 T 29-03-2018 IPR015947 PUA-like domain Y880_RS28760 2b34e64d329bdf412264a2cb4a6b8a07 240 PIRSF PIRSF015601 3 238 4.5E-59 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS28760 2b34e64d329bdf412264a2cb4a6b8a07 240 SUPERFAMILY SSF75217 74 239 6.98E-54 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases Y880_RS28760 2b34e64d329bdf412264a2cb4a6b8a07 240 Gene3D G3DSA:2.40.240.20 1 72 4.3E-20 T 29-03-2018 Y880_RS28760 2b34e64d329bdf412264a2cb4a6b8a07 240 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 19 237 1.2E-61 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS28760 2b34e64d329bdf412264a2cb4a6b8a07 240 Pfam PF04452 RNA methyltransferase 19 233 5.3E-71 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 Gene3D G3DSA:1.10.10.60 267 304 8.1E-15 T 29-03-2018 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 Gene3D G3DSA:2.60.120.280 36 214 5.8E-20 T 29-03-2018 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 Gene3D G3DSA:3.90.1240.10 215 266 7.6E-15 T 29-03-2018 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 293 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 SUPERFAMILY SSF51215 36 187 3.53E-32 T 29-03-2018 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 2.7E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 2.7E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 SUPERFAMILY SSF46689 251 301 1.93E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 SUPERFAMILY SSF46689 203 246 1.16E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 SMART SM00342 214 297 8.7E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 Pfam PF12833 Helix-turn-helix domain 220 299 1.1E-15 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS15980 cbe9dd687a60d0c71ff4b9616691dcfb 307 Pfam PF02311 AraC-like ligand binding domain 47 184 4.0E-28 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 Gene3D G3DSA:1.10.45.10 432 470 1.0E-12 T 29-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 Gene3D G3DSA:3.30.43.10 8 107 2.0E-18 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 Pfam PF01565 FAD binding domain 56 194 5.5E-36 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 59 470 1.7E-171 T 29-03-2018 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 470 1.2E-72 T 29-03-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 Gene3D G3DSA:3.30.465.10 108 252 3.6E-38 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 SUPERFAMILY SSF56176 19 231 7.01E-65 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS25400 6664bb9b08278dd07979c87f31a27f82 499 SUPERFAMILY SSF55103 204 473 3.43E-77 T 29-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y880_RS17290 7c5b8f4d4100a7c0e26ebff6e2b69368 257 Pfam PF00588 SpoU rRNA Methylase family 5 155 2.9E-34 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Y880_RS17290 7c5b8f4d4100a7c0e26ebff6e2b69368 257 SUPERFAMILY SSF75217 4 170 1.18E-38 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases Y880_RS17290 7c5b8f4d4100a7c0e26ebff6e2b69368 257 PIRSF PIRSF004808 1 251 2.1E-72 T 29-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Y880_RS17290 7c5b8f4d4100a7c0e26ebff6e2b69368 257 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 2 245 6.4E-76 T 29-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Y880_RS17290 7c5b8f4d4100a7c0e26ebff6e2b69368 257 Gene3D G3DSA:3.40.1280.10 1 166 3.2E-45 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 Pfam PF00005 ABC transporter 375 523 4.5E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 Pfam PF00664 ABC transporter transmembrane region 63 313 7.9E-29 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 SMART SM00382 384 575 7.3E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 Gene3D G3DSA:3.40.50.300 357 590 2.6E-67 T 29-03-2018 Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 SUPERFAMILY SSF90123 13 343 3.01E-54 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 SUPERFAMILY SSF52540 356 591 1.96E-79 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01050 a967091ba9077aa69f5cec36b26aade9 596 Gene3D G3DSA:1.20.1560.10 6 347 1.6E-45 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 TIGRFAM TIGR00746 arcC: carbamate kinase 1 301 9.9E-139 T 29-03-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 Gene3D G3DSA:3.40.1160.10 1 302 1.1E-46 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PIRSF PIRSF000723 1 302 1.1E-111 T 29-03-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 103 122 2.6E-70 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 151 170 2.6E-70 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 174 192 2.6E-70 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 206 221 2.6E-70 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 257 272 2.6E-70 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 41 60 2.6E-70 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 71 89 2.6E-70 T 29-03-2018 Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 SUPERFAMILY SSF53633 1 300 3.8E-78 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS24455 b21b6b6ed6d833f3872ad64b7df1c877 310 Pfam PF00696 Amino acid kinase family 1 283 1.2E-25 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS29170 569c3b21ff1ca0f8865d10423c4c29f5 325 SMART SM00797 24 312 2.1E-133 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y880_RS29170 569c3b21ff1ca0f8865d10423c4c29f5 325 SUPERFAMILY SSF50891 180 304 1.52E-9 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS29170 569c3b21ff1ca0f8865d10423c4c29f5 325 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 320 7.6E-77 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y880_RS29170 569c3b21ff1ca0f8865d10423c4c29f5 325 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 298 4.0E-83 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y880_RS06750 3edfcbe1b41a0d0a6ec2014fdd3cf824 466 Gene3D G3DSA:3.50.50.60 23 460 1.4E-34 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS06750 3edfcbe1b41a0d0a6ec2014fdd3cf824 466 Pfam PF01266 FAD dependent oxidoreductase 35 396 4.8E-54 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS06750 3edfcbe1b41a0d0a6ec2014fdd3cf824 466 SUPERFAMILY SSF51905 359 413 1.77E-40 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS06750 3edfcbe1b41a0d0a6ec2014fdd3cf824 466 SUPERFAMILY SSF51905 34 259 1.77E-40 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 448 6.1E-199 T 29-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 Pfam PF13481 AAA domain 76 219 1.2E-13 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 Pfam PF13541 Subunit ChlI of Mg-chelatase 364 427 5.5E-7 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 PRINTS PR01874 DNA repair protein radA signature 10 34 2.8E-94 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 PRINTS PR01874 DNA repair protein radA signature 121 138 2.8E-94 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 PRINTS PR01874 DNA repair protein radA signature 171 195 2.8E-94 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 PRINTS PR01874 DNA repair protein radA signature 80 108 2.8E-94 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 PRINTS PR01874 DNA repair protein radA signature 210 238 2.8E-94 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 PRINTS PR01874 DNA repair protein radA signature 319 342 2.8E-94 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 PRINTS PR01874 DNA repair protein radA signature 245 271 2.8E-94 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 SUPERFAMILY SSF52540 66 286 2.01E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 SUPERFAMILY SSF54211 252 266 2.73E-40 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 SUPERFAMILY SSF54211 300 452 2.73E-40 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 SMART SM00382 88 241 2.5E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 Hamap MF_01498 DNA repair protein RadA [radA]. 21 452 43.868 T 29-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 Gene3D G3DSA:3.40.50.300 70 280 2.5E-42 T 29-03-2018 Y880_RS21390 cac8379b6336e4e33c73876a6a3244c2 453 Gene3D G3DSA:3.30.230.10 282 453 1.5E-29 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS24745 d3fbbfac9491b9a37f1ed4bc723e329d 203 PIRSF PIRSF006806 7 196 5.2E-33 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Y880_RS24745 d3fbbfac9491b9a37f1ed4bc723e329d 203 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 193 6.7E-39 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Y880_RS24745 d3fbbfac9491b9a37f1ed4bc723e329d 203 SUPERFAMILY SSF100950 8 200 4.33E-52 T 29-03-2018 Y880_RS24745 d3fbbfac9491b9a37f1ed4bc723e329d 203 Gene3D G3DSA:3.40.50.10420 2 199 1.8E-53 T 29-03-2018 Y880_RS24745 d3fbbfac9491b9a37f1ed4bc723e329d 203 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 193 4.0E-44 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 SUPERFAMILY SSF51905 1 276 2.81E-68 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 SUPERFAMILY SSF51905 434 492 2.81E-68 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 PIRSF PIRSF000137 310 492 3.0E-42 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 PIRSF PIRSF000137 1 326 2.1E-71 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 Pfam PF05199 GMC oxidoreductase 349 486 9.9E-38 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 75 98 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 SUPERFAMILY SSF54373 303 434 7.06E-31 T 29-03-2018 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 Gene3D G3DSA:3.30.560.10 98 450 1.8E-83 T 29-03-2018 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 Pfam PF00732 GMC oxidoreductase 2 283 1.1E-61 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 Gene3D G3DSA:4.10.450.10 45 97 2.3E-14 T 29-03-2018 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 243 257 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS07820 85c5c252ee75bc1d4840ed0d1f02ea84 492 Gene3D G3DSA:3.50.50.60 1 44 0.003 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS14870 ea1d8e9c2083daf1d520494c31d36667 448 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 10 440 1.9E-240 T 29-03-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Y880_RS14870 ea1d8e9c2083daf1d520494c31d36667 448 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 448 258.787 T 29-03-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Y880_RS14870 ea1d8e9c2083daf1d520494c31d36667 448 SUPERFAMILY SSF53686 98 440 8.64E-55 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS14870 ea1d8e9c2083daf1d520494c31d36667 448 Gene3D G3DSA:3.40.50.1100 249 443 1.1E-26 T 29-03-2018 Y880_RS14870 ea1d8e9c2083daf1d520494c31d36667 448 Gene3D G3DSA:3.40.50.1100 75 248 3.3E-26 T 29-03-2018 Y880_RS14870 ea1d8e9c2083daf1d520494c31d36667 448 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 109 123 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y880_RS14870 ea1d8e9c2083daf1d520494c31d36667 448 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 97 398 3.4E-57 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS29415 de1d151a6a422825c4f52568d6f3e8a9 322 Pfam PF10503 Esterase PHB depolymerase 55 181 1.1E-15 T 29-03-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 Y880_RS29415 de1d151a6a422825c4f52568d6f3e8a9 322 Gene3D G3DSA:3.40.50.1820 47 320 1.2E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29415 de1d151a6a422825c4f52568d6f3e8a9 322 SUPERFAMILY SSF53474 46 218 1.03E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29415 de1d151a6a422825c4f52568d6f3e8a9 322 SUPERFAMILY SSF53474 263 296 1.03E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS00195 bf2442b0a128f8b9cf13108ed719d01c 299 Pfam PF00535 Glycosyl transferase family 2 20 179 6.9E-34 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS00195 bf2442b0a128f8b9cf13108ed719d01c 299 Gene3D G3DSA:3.90.550.10 3 298 3.2E-51 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS00195 bf2442b0a128f8b9cf13108ed719d01c 299 SUPERFAMILY SSF53448 17 229 1.41E-57 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS08570 e0a233dec157007ca46d4e884f0e7dc5 410 Gene3D G3DSA:3.40.50.970 2 408 9.9E-91 T 29-03-2018 Y880_RS08570 e0a233dec157007ca46d4e884f0e7dc5 410 Pfam PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal 5 45 1.0E-20 T 29-03-2018 IPR022593 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain KEGG: 00280+1.2.4.4|KEGG: 00640+1.2.4.4|MetaCyc: PWY-5046 Y880_RS08570 e0a233dec157007ca46d4e884f0e7dc5 410 Pfam PF00676 Dehydrogenase E1 component 81 376 1.6E-98 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 Y880_RS08570 e0a233dec157007ca46d4e884f0e7dc5 410 SUPERFAMILY SSF52518 4 407 3.32E-96 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS10540 59b989225fb870adccdb931950f6b5a7 156 SUPERFAMILY SSF55811 4 143 4.74E-28 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS10540 59b989225fb870adccdb931950f6b5a7 156 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS10540 59b989225fb870adccdb931950f6b5a7 156 Pfam PF00293 NUDIX domain 4 119 1.3E-16 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS10540 59b989225fb870adccdb931950f6b5a7 156 Gene3D G3DSA:3.90.79.10 1 150 1.6E-29 T 29-03-2018 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 Pfam PF11842 Domain of unknown function (DUF3362) 593 728 8.8E-53 T 29-03-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 379 399 - T 29-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 23 645 49.862 T 29-03-2018 IPR022946 Uncharacterised protein family UPF0313 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 SUPERFAMILY SSF102114 469 620 4.45E-14 T 29-03-2018 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 SUPERFAMILY SSF102114 370 439 4.45E-14 T 29-03-2018 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 Pfam PF04055 Radical SAM superfamily 379 584 4.5E-22 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 23 643 4.7E-264 T 29-03-2018 IPR022946 Uncharacterised protein family UPF0313 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 Pfam PF08497 Radical SAM N-terminal 23 378 4.0E-146 T 29-03-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 Gene3D G3DSA:3.20.20.70 258 729 2.4E-37 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 SMART SM00729 375 628 1.4E-7 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS23155 0dfc34b6b1e24efa2f04937116591e09 747 Gene3D G3DSA:3.40.50.280 135 207 0.05 T 29-03-2018 Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 Gene3D G3DSA:2.30.38.10 362 437 1.0E-20 T 29-03-2018 Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 Pfam PF00501 AMP-binding enzyme 27 443 1.1E-100 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 528 6.6E-21 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 Gene3D G3DSA:3.40.50.980 21 189 3.8E-41 T 29-03-2018 Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 Gene3D G3DSA:3.30.300.30 438 548 3.4E-29 T 29-03-2018 Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 Gene3D G3DSA:3.40.50.980 190 339 5.2E-35 T 29-03-2018 Y880_RS08345 8d245dbe9018020ed3ffd8f247f95b55 549 SUPERFAMILY SSF56801 16 540 1.96E-144 T 29-03-2018 Y880_RS16230 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Pfam PF02631 RecX family 33 148 3.8E-32 T 29-03-2018 IPR003783 Regulatory protein RecX GO:0006282 Y880_RS16230 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Gene3D G3DSA:1.10.10.10 10 55 1.4E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16230 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Gene3D G3DSA:1.10.10.10 103 153 1.1E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16230 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Hamap MF_01114 Regulatory protein RecX [recX]. 6 153 13.77 T 29-03-2018 IPR003783 Regulatory protein RecX GO:0006282 Y880_RS16230 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Gene3D G3DSA:1.10.10.10 57 101 2.1E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23010 31a1e51dcb2a25afdf900d7ccbb3ae29 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS23010 31a1e51dcb2a25afdf900d7ccbb3ae29 489 SUPERFAMILY SSF53720 15 483 3.67E-148 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS23010 31a1e51dcb2a25afdf900d7ccbb3ae29 489 Gene3D G3DSA:3.40.309.10 275 462 2.5E-67 T 29-03-2018 Y880_RS23010 31a1e51dcb2a25afdf900d7ccbb3ae29 489 Gene3D G3DSA:3.40.605.10 13 274 1.2E-77 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS23010 31a1e51dcb2a25afdf900d7ccbb3ae29 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 284 295 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS23010 31a1e51dcb2a25afdf900d7ccbb3ae29 489 Pfam PF00171 Aldehyde dehydrogenase family 18 475 7.2E-152 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS14925 46355e9a4ec19967385907d0fecef204 190 Gene3D G3DSA:1.25.10.10 1 170 3.9E-22 T 29-03-2018 IPR011989 Armadillo-like helical Y880_RS14925 46355e9a4ec19967385907d0fecef204 190 Pfam PF13646 HEAT repeats 60 116 1.4E-7 T 29-03-2018 Y880_RS14925 46355e9a4ec19967385907d0fecef204 190 Pfam PF02985 HEAT repeat 130 152 4.0E-4 T 29-03-2018 IPR000357 HEAT repeat GO:0005515 Y880_RS14925 46355e9a4ec19967385907d0fecef204 190 SUPERFAMILY SSF48371 5 165 1.15E-24 T 29-03-2018 IPR016024 Armadillo-type fold GO:0005488 Y880_RS14925 46355e9a4ec19967385907d0fecef204 190 SMART SM00567 E-Z type HEAT repeats 140 170 25.0 T 29-03-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y880_RS14925 46355e9a4ec19967385907d0fecef204 190 SMART SM00567 E-Z type HEAT repeats 68 103 18.0 T 29-03-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 Gene3D G3DSA:2.60.120.10 5 105 4.8E-10 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 Gene3D G3DSA:1.10.10.60 153 211 3.7E-12 T 29-03-2018 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 Pfam PF02311 AraC-like ligand binding domain 26 92 8.6E-7 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 249 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 SUPERFAMILY SSF46689 207 256 2.11E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 SUPERFAMILY SSF51182 5 180 3.26E-18 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 SMART SM00342 171 253 5.2E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 Gene3D G3DSA:1.10.10.60 212 260 1.4E-9 T 29-03-2018 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 Pfam PF12833 Helix-turn-helix domain 177 254 1.6E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 253 5.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS05035 10bfe365431308ce8370e0d619a0441a 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 222 237 5.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS14065 eb943573af4cf04775682d8975416257 186 PIRSF PIRSF000232 1 186 2.0E-66 T 29-03-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like Y880_RS14065 eb943573af4cf04775682d8975416257 186 Gene3D G3DSA:3.40.109.10 1 185 9.4E-33 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS14065 eb943573af4cf04775682d8975416257 186 SUPERFAMILY SSF55469 1 182 1.7E-38 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS14065 eb943573af4cf04775682d8975416257 186 Pfam PF00881 Nitroreductase family 9 163 1.3E-23 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 SUPERFAMILY SSF54373 297 401 1.5E-17 T 29-03-2018 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 SUPERFAMILY SSF51905 26 316 1.94E-55 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 SUPERFAMILY SSF51905 413 456 1.94E-55 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 PRINTS PR00757 Flavin-containing amine oxidase signature 29 48 1.6E-10 T 29-03-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 PRINTS PR00757 Flavin-containing amine oxidase signature 403 425 1.6E-10 T 29-03-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 PRINTS PR00757 Flavin-containing amine oxidase signature 434 451 1.6E-10 T 29-03-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 Gene3D G3DSA:3.40.50.720 21 133 1.9E-9 T 29-03-2018 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 Pfam PF01593 Flavin containing amine oxidoreductase 37 452 3.5E-47 T 29-03-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 Gene3D G3DSA:3.90.660.10 233 393 5.6E-26 T 29-03-2018 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 Gene3D G3DSA:3.50.50.60 394 461 6.2E-10 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28775 54e27e73a038e8573ad64713fb187d23 496 Gene3D G3DSA:1.10.405.10 134 211 1.2E-11 T 29-03-2018 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 SUPERFAMILY SSF56059 133 334 1.01E-54 T 29-03-2018 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 277 305 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 100 111 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 6 335 35.411 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 PIRSF PIRSF039102 3 343 2.2E-98 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 Gene3D G3DSA:3.30.470.20 201 344 2.6E-40 T 29-03-2018 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 Gene3D G3DSA:3.40.50.20 1 134 6.8E-36 T 29-03-2018 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 Gene3D G3DSA:3.30.1490.20 135 200 2.0E-18 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 Pfam PF01820 D-ala D-ala ligase N-terminus 7 123 7.7E-22 T 29-03-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 SUPERFAMILY SSF52440 5 132 1.92E-26 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 331 7.4E-88 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS19280 dd404c1c9df4f9a2dd01340406106192 346 Pfam PF07478 D-ala D-ala ligase C-terminus 146 330 5.0E-51 T 29-03-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 Gene3D G3DSA:1.20.1250.20 1 202 2.8E-9 T 29-03-2018 Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 Pfam PF07690 Major Facilitator Superfamily 19 387 8.6E-17 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 SUPERFAMILY SSF69593 385 573 2.62E-28 T 29-03-2018 Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 Gene3D G3DSA:1.20.1250.20 221 420 1.5E-16 T 29-03-2018 Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 Pfam PF01553 Acyltransferase 443 570 1.5E-23 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 SUPERFAMILY SSF103473 12 426 2.49E-26 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 SMART SM00563 457 573 3.5E-28 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS14380 7ce95685ade5cbb40c301623aeb2384b 624 Gene3D G3DSA:3.40.1130.10 421 620 4.3E-35 T 29-03-2018 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Pfam PF00512 His Kinase A (phospho-acceptor) domain 798 864 2.0E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Gene3D G3DSA:3.30.450.20 634 788 6.2E-21 T 29-03-2018 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 SMART SM00387 908 1018 2.0E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 SUPERFAMILY SSF55785 629 751 1.9E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 SUPERFAMILY SSF47384 781 865 3.53E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 SUPERFAMILY SSF52172 1037 1157 1.71E-20 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 SUPERFAMILY SSF55874 854 1017 9.43E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Pfam PF12860 PAS fold 644 758 2.1E-45 T 29-03-2018 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 909 1017 9.3E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Pfam PF00072 Response regulator receiver domain 1041 1151 5.5E-11 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 SMART SM00448 1039 1152 9.5E-11 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 SMART SM00388 798 864 1.4E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Gene3D G3DSA:3.30.565.10 859 1018 5.5E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 978 996 6.3E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1002 1015 6.3E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 943 957 6.3E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 961 971 6.3E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Gene3D G3DSA:3.40.50.2300 1023 1159 1.0E-19 T 29-03-2018 Y880_RS14400 be32f9477c508559eb99e7a8334d63d2 1159 Gene3D G3DSA:1.10.287.130 789 858 6.6E-13 T 29-03-2018 Y880_RS01960 3aa0ccab2cde426f5e9209579330dd18 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 81 2.0E-13 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS01960 3aa0ccab2cde426f5e9209579330dd18 213 Gene3D G3DSA:1.20.1050.10 95 145 2.5E-16 T 29-03-2018 Y880_RS01960 3aa0ccab2cde426f5e9209579330dd18 213 Gene3D G3DSA:1.20.1050.10 146 201 1.0E-15 T 29-03-2018 Y880_RS01960 3aa0ccab2cde426f5e9209579330dd18 213 Gene3D G3DSA:3.40.30.10 1 94 9.2E-26 T 29-03-2018 Y880_RS01960 3aa0ccab2cde426f5e9209579330dd18 213 SUPERFAMILY SSF52833 1 84 3.77E-21 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS01960 3aa0ccab2cde426f5e9209579330dd18 213 SUPERFAMILY SSF47616 78 207 7.78E-39 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS01960 3aa0ccab2cde426f5e9209579330dd18 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 197 6.7E-11 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS24875 81aa99e3ceecb774db8562f1dc4dc1e1 352 ProDom PD032367 ALGINATE REGULATORY ALGR3 ALGP TRANSCRIPTION TRANSCRIPTIONAL DNA-BINDING ACTIVATOR KINASES KINASE 1 123 2.0E-47 T 29-03-2018 Y880_RS24875 81aa99e3ceecb774db8562f1dc4dc1e1 352 Gene3D G3DSA:1.20.1170.10 12 343 3.0E-6 T 29-03-2018 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 Pfam PF01339 CheB methylesterase 154 330 2.0E-57 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 PIRSF PIRSF000876 1 335 1.1E-97 T 29-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 SMART SM00448 1 118 3.6E-9 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 SUPERFAMILY SSF52172 2 104 1.42E-20 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 Gene3D G3DSA:3.40.50.2300 1 126 2.0E-22 T 29-03-2018 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 Gene3D G3DSA:3.40.50.180 144 335 4.1E-69 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 SUPERFAMILY SSF52738 151 334 1.96E-61 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 Pfam PF00072 Response regulator receiver domain 4 102 3.1E-16 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16670 4b90b4ba6d6527a6615579b5bb6488fd 335 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 1 335 32.552 T 29-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 249 2.5E-61 T 29-03-2018 Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 190 0.0013 T 29-03-2018 Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 3.8E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.8E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 3.8E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.7E-35 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.7E-35 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.7E-35 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.7E-35 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.7E-35 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.7E-35 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 SUPERFAMILY SSF51735 10 249 3.19E-76 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 Gene3D G3DSA:3.40.50.720 46 250 4.9E-61 T 29-03-2018 Y880_RS27535 cf480524004bb4b9e9b4733de4dd8cd1 250 Gene3D G3DSA:3.40.50.720 3 45 2.8E-9 T 29-03-2018 Y880_RS27205 2692738787bbf84bd93535310e8355b6 195 Gene3D G3DSA:3.40.30.10 2 195 1.3E-51 T 29-03-2018 Y880_RS27205 2692738787bbf84bd93535310e8355b6 195 PIRSF PIRSF006386 1 195 3.6E-68 T 29-03-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590 Y880_RS27205 2692738787bbf84bd93535310e8355b6 195 Pfam PF01323 DSBA-like thioredoxin domain 4 194 7.0E-45 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 Y880_RS27205 2692738787bbf84bd93535310e8355b6 195 SUPERFAMILY SSF52833 1 194 1.06E-47 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 217 387 1.4E-33 T 29-03-2018 Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 Gene3D G3DSA:1.10.150.210 228 274 2.4E-24 T 29-03-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 Gene3D G3DSA:3.40.50.1000 275 420 2.7E-27 T 29-03-2018 IPR023214 HAD-like domain Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 Pfam PF13740 ACT domain 28 104 2.4E-26 T 29-03-2018 Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 Gene3D G3DSA:3.30.70.260 25 120 3.0E-15 T 29-03-2018 Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 202 420 1.2E-79 T 29-03-2018 Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 Gene3D G3DSA:3.30.70.260 121 213 2.4E-19 T 29-03-2018 Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 SUPERFAMILY SSF55021 27 108 1.6E-14 T 29-03-2018 Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 SUPERFAMILY SSF56784 216 422 2.4E-52 T 29-03-2018 IPR023214 HAD-like domain Y880_RS23330 baa2b9faada1fc4fb25b51a4f42defc5 429 Pfam PF12710 haloacid dehalogenase-like hydrolase 218 385 3.6E-25 T 29-03-2018 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 SUPERFAMILY SSF50465 331 433 1.97E-33 T 29-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Pfam PF01583 Adenylylsulphate kinase 464 614 1.9E-52 T 29-03-2018 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 PRINTS PR00315 GTP-binding elongation factor signature 107 117 3.1E-13 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 PRINTS PR00315 GTP-binding elongation factor signature 26 39 3.1E-13 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 PRINTS PR00315 GTP-binding elongation factor signature 160 169 3.1E-13 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 PRINTS PR00315 GTP-binding elongation factor signature 87 95 3.1E-13 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 PRINTS PR00315 GTP-binding elongation factor signature 123 134 3.1E-13 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 460 55.211 T 29-03-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Gene3D G3DSA:3.40.50.300 1 235 1.8E-40 T 29-03-2018 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 SUPERFAMILY SSF52540 17 234 1.23E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 211 2.4E-14 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 463 631 32.412 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Gene3D G3DSA:2.40.30.10 329 434 1.3E-24 T 29-03-2018 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 432 1.5E-205 T 29-03-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Gene3D G3DSA:2.40.30.10 236 327 1.7E-23 T 29-03-2018 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 SUPERFAMILY SSF50447 243 328 3.98E-25 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 SUPERFAMILY SSF52540 463 629 1.74E-28 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Gene3D G3DSA:3.40.50.300 461 633 3.4E-34 T 29-03-2018 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 450 627 2.4E-41 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y880_RS20515 7c7d4d04f41a636ed86739ae933ad503 633 Pfam PF00009 Elongation factor Tu GTP binding domain 23 225 2.5E-44 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS19030 72ecb8eeeb09d56221b0486bbd30b63f 435 PIRSF PIRSF000337 2 435 3.0E-150 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y880_RS19030 72ecb8eeeb09d56221b0486bbd30b63f 435 SUPERFAMILY SSF51679 4 433 3.01E-102 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS19030 72ecb8eeeb09d56221b0486bbd30b63f 435 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 20 428 7.2E-109 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y880_RS19030 72ecb8eeeb09d56221b0486bbd30b63f 435 Gene3D G3DSA:3.20.20.30 3 435 3.4E-80 T 29-03-2018 Y880_RS19030 72ecb8eeeb09d56221b0486bbd30b63f 435 Pfam PF00296 Luciferase-like monooxygenase 34 387 6.1E-51 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS08285 9889ffde2a6515fcf5d4ead9700f9f2c 391 Gene3D G3DSA:3.30.390.10 1 137 8.9E-45 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS08285 9889ffde2a6515fcf5d4ead9700f9f2c 391 SUPERFAMILY SSF54826 1 143 1.13E-33 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS08285 9889ffde2a6515fcf5d4ead9700f9f2c 391 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 39 139 1.3E-20 T 29-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Y880_RS08285 9889ffde2a6515fcf5d4ead9700f9f2c 391 SMART SM00922 159 262 1.8E-22 T 29-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Y880_RS08285 9889ffde2a6515fcf5d4ead9700f9f2c 391 Pfam PF13378 Enolase C-terminal domain-like 163 382 1.7E-55 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS08285 9889ffde2a6515fcf5d4ead9700f9f2c 391 Gene3D G3DSA:3.20.20.120 138 380 8.2E-56 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS08285 9889ffde2a6515fcf5d4ead9700f9f2c 391 SUPERFAMILY SSF51604 127 388 4.06E-69 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS25305 2f7b9e0750b55a019522f844daf10501 88 Pfam PF01192 RNA polymerase Rpb6 8 59 4.7E-17 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Y880_RS25305 2f7b9e0750b55a019522f844daf10501 88 SMART SM01409 8 61 4.8E-17 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Y880_RS25305 2f7b9e0750b55a019522f844daf10501 88 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 8.0E-23 T 29-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS25305 2f7b9e0750b55a019522f844daf10501 88 SUPERFAMILY SSF63562 1 77 2.79E-25 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Y880_RS25305 2f7b9e0750b55a019522f844daf10501 88 Gene3D G3DSA:3.90.940.10 1 87 3.2E-26 T 29-03-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Y880_RS25305 2f7b9e0750b55a019522f844daf10501 88 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.792 T 29-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS03450 9ecfbccc13cd30e230e64f8e40b67526 275 Gene3D G3DSA:3.40.50.1000 97 261 9.2E-22 T 29-03-2018 IPR023214 HAD-like domain Y880_RS03450 9ecfbccc13cd30e230e64f8e40b67526 275 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 81 206 4.0E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS03450 9ecfbccc13cd30e230e64f8e40b67526 275 Gene3D G3DSA:1.10.150.240 27 96 8.7E-34 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS03450 9ecfbccc13cd30e230e64f8e40b67526 275 SUPERFAMILY SSF56784 10 262 7.24E-57 T 29-03-2018 IPR023214 HAD-like domain Y880_RS03450 9ecfbccc13cd30e230e64f8e40b67526 275 Pfam PF00702 haloacid dehalogenase-like hydrolase 14 201 6.5E-7 T 29-03-2018 Y880_RS03450 9ecfbccc13cd30e230e64f8e40b67526 275 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 9 259 1.3E-112 T 29-03-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 Y880_RS03450 9ecfbccc13cd30e230e64f8e40b67526 275 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 275 142.353 T 29-03-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 29-03-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 Gene3D G3DSA:3.30.1140.32 108 207 9.7E-42 T 29-03-2018 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 Pfam PF07650 KH domain 38 111 4.2E-22 T 29-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 Gene3D G3DSA:3.30.300.20 17 107 3.8E-29 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 SMART SM00322 60 125 3.0E-9 T 29-03-2018 IPR004087 K Homology domain GO:0003676 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 3.2E-42 T 29-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 40.232 T 29-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 SUPERFAMILY SSF54814 2 106 7.85E-39 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 SUPERFAMILY SSF54821 108 206 9.94E-43 T 29-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19545 397f374ffa27cc6b634f1a88a3a5d2aa 228 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.1E-99 T 29-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Y880_RS13865 e610ab7299ec35d3d3fba79385b3fbca 232 Gene3D G3DSA:3.40.50.150 1 231 1.1E-51 T 29-03-2018 Y880_RS13865 e610ab7299ec35d3d3fba79385b3fbca 232 Pfam PF13489 Methyltransferase domain 47 199 2.3E-27 T 29-03-2018 Y880_RS13865 e610ab7299ec35d3d3fba79385b3fbca 232 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 8 225 2.1E-87 T 29-03-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Y880_RS13865 e610ab7299ec35d3d3fba79385b3fbca 232 SUPERFAMILY SSF53335 12 226 9.76E-52 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS13865 e610ab7299ec35d3d3fba79385b3fbca 232 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 6 231 38.774 T 29-03-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Y880_RS27780 bb2cc2649237f2d93cefa68fecd78ffd 259 Gene3D G3DSA:3.30.450.40 73 256 4.2E-40 T 29-03-2018 IPR029016 GAF domain-like Y880_RS27780 bb2cc2649237f2d93cefa68fecd78ffd 259 Pfam PF01614 Bacterial transcriptional regulator 124 250 9.7E-19 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS27780 bb2cc2649237f2d93cefa68fecd78ffd 259 SMART SM00346 2 93 7.6E-19 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS27780 bb2cc2649237f2d93cefa68fecd78ffd 259 SUPERFAMILY SSF46785 6 76 1.07E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27780 bb2cc2649237f2d93cefa68fecd78ffd 259 Pfam PF09339 IclR helix-turn-helix domain 6 56 2.5E-17 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS27780 bb2cc2649237f2d93cefa68fecd78ffd 259 Gene3D G3DSA:1.10.10.10 2 72 3.4E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27780 bb2cc2649237f2d93cefa68fecd78ffd 259 SUPERFAMILY SSF55781 70 251 2.88E-38 T 29-03-2018 IPR029016 GAF domain-like Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 SUPERFAMILY SSF52540 560 857 1.23E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 SMART SM01086 782 874 1.9E-8 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 787 856 8.6E-11 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Gene3D G3DSA:1.10.8.60 784 874 6.3E-10 T 29-03-2018 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Gene3D G3DSA:3.40.50.300 164 349 1.5E-22 T 29-03-2018 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Gene3D G3DSA:1.10.1780.10 7 152 1.9E-18 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 660 678 2.0E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 689 707 2.0E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 722 736 2.0E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 615 633 2.0E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 SUPERFAMILY SSF52540 167 544 1.25E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Gene3D G3DSA:1.10.8.60 350 561 1.2E-35 T 29-03-2018 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Gene3D G3DSA:3.40.50.300 566 781 5.4E-38 T 29-03-2018 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 SMART SM00382 611 772 2.8E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 SMART SM00382 205 350 2.6E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Pfam PF07724 AAA domain (Cdc48 subfamily) 611 776 8.2E-42 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 SUPERFAMILY SSF81923 20 128 4.71E-11 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 15 865 0.0 T 29-03-2018 IPR017729 Type VI secretion system, ATPase ClpV1 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 341 7.2E-10 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 29 75 3.1E-4 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS05370 e2e3e06769847cf23dacb371a0033c6b 877 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 645 663 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 86 2.4E-4 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 SUPERFAMILY SSF56645 18 225 7.46E-42 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 140 216 4.3E-9 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 Gene3D G3DSA:1.20.140.10 216 383 6.4E-19 T 29-03-2018 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 256 366 1.6E-9 T 29-03-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 Gene3D G3DSA:2.40.110.10 123 215 1.4E-20 T 29-03-2018 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 PIRSF PIRSF016578 2 383 6.2E-31 T 29-03-2018 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 Gene3D G3DSA:1.10.540.10 9 97 1.2E-9 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS10395 cb1c89abfda7f5d156f8d92a05e51477 383 SUPERFAMILY SSF47203 246 381 1.93E-20 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS14330 35423628047c5795295414fbf817195b 103 SUPERFAMILY SSF47413 49 98 9.92E-12 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS14330 35423628047c5795295414fbf817195b 103 Gene3D G3DSA:3.40.1620.10 2 26 0.0022 T 29-03-2018 Y880_RS14330 35423628047c5795295414fbf817195b 103 Pfam PF01381 Helix-turn-helix 51 99 3.4E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS14330 35423628047c5795295414fbf817195b 103 Gene3D G3DSA:1.10.10.60 27 61 9.7E-4 T 29-03-2018 Y880_RS14330 35423628047c5795295414fbf817195b 103 Gene3D G3DSA:1.10.260.40 62 101 2.6E-13 T 29-03-2018 Y880_RS14330 35423628047c5795295414fbf817195b 103 SMART SM00530 49 103 1.0E-9 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS23575 79994cd1c8e88959935f79661a837fe1 252 Gene3D G3DSA:3.90.1200.10 56 248 5.1E-10 T 29-03-2018 Y880_RS23575 79994cd1c8e88959935f79661a837fe1 252 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 23 224 2.3E-70 T 29-03-2018 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 Reactome: R-HSA-6782315|Reactome: R-HSA-6804756 Y880_RS23575 79994cd1c8e88959935f79661a837fe1 252 PIRSF PIRSF026326 3 246 9.5E-68 T 29-03-2018 IPR027023 Putative lipopolysaccharide kinase InaA Y880_RS23575 79994cd1c8e88959935f79661a837fe1 252 SUPERFAMILY SSF56112 35 242 9.49E-13 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 SUPERFAMILY SSF53927 5 146 7.03E-49 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 90 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 9 364 7.2E-116 T 29-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 Pfam PF01872 RibD C-terminal domain 149 363 4.7E-47 T 29-03-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 Gene3D G3DSA:3.40.430.10 127 366 1.2E-69 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 SUPERFAMILY SSF53597 147 365 1.68E-55 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 101 1.2E-19 T 29-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 Gene3D G3DSA:3.40.140.10 2 126 1.8E-34 T 29-03-2018 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 148 367 3.1E-53 T 29-03-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 Y880_RS18520 85e02b085a1af98b9cb42f8a7fd82be8 373 PIRSF PIRSF006769 1 370 1.2E-127 T 29-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 Gene3D G3DSA:3.50.50.60 184 318 2.0E-10 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 294 2.5E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 206 222 1.1E-10 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.1E-10 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 1.1E-10 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 Gene3D G3DSA:3.90.180.10 144 183 0.023 T 29-03-2018 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.2E-8 T 29-03-2018 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 1.2E-8 T 29-03-2018 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 291 1.2E-8 T 29-03-2018 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 Gene3D G3DSA:3.50.50.60 3 143 1.9E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04415 f023365a654c8927949814d16fcb5ca3 412 SUPERFAMILY SSF51905 2 315 5.83E-34 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 SMART SM00448 5 120 4.7E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 Gene3D G3DSA:1.10.10.10 135 244 3.5E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 237 6.8E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 Pfam PF00072 Response regulator receiver domain 7 120 4.9E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 Gene3D G3DSA:3.40.50.2300 2 134 2.4E-36 T 29-03-2018 Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 SUPERFAMILY SSF46894 138 238 3.4E-25 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 SMART SM00862 162 237 2.1E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS23450 5576a940bdf8d5510159d02b6364fd59 244 SUPERFAMILY SSF52172 5 132 1.29E-36 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.4E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 1.4E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.4E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.4E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 243 1.3E-40 T 29-03-2018 Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 Gene3D G3DSA:3.40.50.720 2 246 1.1E-52 T 29-03-2018 Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 SUPERFAMILY SSF51735 2 244 2.7E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 3.8E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08470 b0d7e2482264b890cd96105741abf410 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 3.8E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01360 6830d02b51ed6f30d9ee682114bbbdc8 153 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 2.5E-25 T 29-03-2018 IPR009921 Domain of unknown function DUF1456 Y880_RS01360 6830d02b51ed6f30d9ee682114bbbdc8 153 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 1.1E-20 T 29-03-2018 IPR009921 Domain of unknown function DUF1456 Y880_RS06770 1ffc6dd159d7f7a70569e8e11a24c333 269 SUPERFAMILY SSF53335 9 202 2.28E-31 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS06770 1ffc6dd159d7f7a70569e8e11a24c333 269 Pfam PF13649 Methyltransferase domain 49 155 3.7E-9 T 29-03-2018 Y880_RS06770 1ffc6dd159d7f7a70569e8e11a24c333 269 Gene3D G3DSA:3.40.50.150 2 267 5.0E-29 T 29-03-2018 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 Gene3D G3DSA:2.40.37.10 204 358 2.3E-62 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 SMART SM01005 233 357 2.3E-67 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 Pfam PF00842 Alanine racemase, C-terminal domain 233 356 6.4E-42 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 29-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 7.9E-62 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 TIGRFAM TIGR00492 alr: alanine racemase 4 356 2.0E-104 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 Hamap MF_01201 Alanine racemase. 1 357 35.201 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 SUPERFAMILY SSF51419 8 234 1.83E-69 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 SUPERFAMILY SSF50621 227 357 4.19E-47 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 266 281 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 121 133 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 26 42 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 61 79 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 339 352 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 192 219 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 287 304 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 155 166 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 249 264 3.9E-63 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS23165 f697dca3a7c9a9b59ea1e58fdb76e258 358 Gene3D G3DSA:3.20.20.10 5 203 4.2E-38 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 Gene3D G3DSA:3.40.50.720 184 338 2.6E-24 T 29-03-2018 Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 144 1.7E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 SUPERFAMILY SSF50129 4 187 2.6E-64 T 29-03-2018 IPR011032 GroES-like Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 TIGRFAM TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent 2 395 6.9E-229 T 29-03-2018 IPR014184 Formaldehyde dehydrogenase, glutathione-independent GO:0016491|GO:0055114 Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 SUPERFAMILY SSF51735 162 356 1.49E-66 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 Pfam PF00107 Zinc-binding dehydrogenase 197 265 2.3E-9 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS25755 c7f9863475490f33f9b117bbffa7a3b0 399 Gene3D G3DSA:3.90.180.10 5 183 8.8E-39 T 29-03-2018 Y880_RS11595 35415cd9956167d4ef06a302b862ec5f 259 PIRSF PIRSF006648 2 255 4.3E-23 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS11595 35415cd9956167d4ef06a302b862ec5f 259 Pfam PF01061 ABC-2 type transporter 13 221 2.2E-39 T 29-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Y880_RS11595 35415cd9956167d4ef06a302b862ec5f 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 61 83 5.6E-9 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS11595 35415cd9956167d4ef06a302b862ec5f 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 199 218 5.6E-9 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS11595 35415cd9956167d4ef06a302b862ec5f 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 179 198 5.6E-9 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS16190 3cc5ee2e82d95b21cf9aca9e47a67b12 297 Gene3D G3DSA:1.10.3720.10 6 293 4.0E-42 T 29-03-2018 Y880_RS16190 3cc5ee2e82d95b21cf9aca9e47a67b12 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 286 9.8E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS16190 3cc5ee2e82d95b21cf9aca9e47a67b12 297 SUPERFAMILY SSF161098 4 283 1.44E-53 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS19315 6a8d39ed517f76a04ee6a89e7eb4a19a 487 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 20 466 1.3E-94 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS19315 6a8d39ed517f76a04ee6a89e7eb4a19a 487 SUPERFAMILY SSF56954 5 466 5.23E-94 T 29-03-2018 Y880_RS19315 6a8d39ed517f76a04ee6a89e7eb4a19a 487 Gene3D G3DSA:1.20.1600.10 24 468 1.7E-90 T 29-03-2018 Y880_RS19315 6a8d39ed517f76a04ee6a89e7eb4a19a 487 Pfam PF02321 Outer membrane efflux protein 285 464 3.9E-21 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS19315 6a8d39ed517f76a04ee6a89e7eb4a19a 487 Pfam PF02321 Outer membrane efflux protein 68 253 1.8E-26 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 617 45.432 T 29-03-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 SUPERFAMILY SSF100934 504 615 2.75E-33 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 SUPERFAMILY SSF100920 384 535 2.75E-50 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 Gene3D G3DSA:3.30.420.40 211 358 4.2E-36 T 29-03-2018 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 SUPERFAMILY SSF53067 200 376 1.5E-47 T 29-03-2018 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 385 404 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 48 60 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 329 345 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 360 380 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 466 482 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 211 221 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 152 172 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 PRINTS PR00301 70kDa heat shock protein signature 20 33 2.4E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 Gene3D G3DSA:2.60.34.10 387 528 5.0E-49 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 Gene3D G3DSA:1.20.1270.10 529 616 2.7E-12 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 Gene3D G3DSA:3.30.420.40 20 210 8.8E-57 T 29-03-2018 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 616 3.0E-282 T 29-03-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 SUPERFAMILY SSF53067 19 197 1.72E-51 T 29-03-2018 Y880_RS17255 258e159c96acfb68826be1f78d40f14d 619 Pfam PF00012 Hsp70 protein 21 600 1.1E-182 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS06780 a813b131484ba8f770cd90ac2cdd1c60 1245 Pfam PF02514 CobN/Magnesium Chelatase 124 1177 1.2E-288 T 29-03-2018 IPR003672 CobN/magnesium chelatase GO:0009058 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 7 463 2.4E-243 T 29-03-2018 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 SUPERFAMILY SSF52172 5 186 4.84E-43 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 Pfam PF00158 Sigma-54 interaction domain 141 308 3.8E-71 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 2.7E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 2.7E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:3.40.50.300 148 313 4.1E-31 T 29-03-2018 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:3.40.50.2300 2 147 3.9E-33 T 29-03-2018 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:1.10.8.60 314 382 1.9E-22 T 29-03-2018 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 SMART SM00382 161 304 7.8E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 Pfam PF00072 Response regulator receiver domain 7 115 1.4E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 SUPERFAMILY SSF52540 140 384 2.01E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 SUPERFAMILY SSF46689 381 465 6.27E-21 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 Pfam PF02954 Bacterial regulatory protein, Fis family 423 463 4.7E-13 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:1.10.10.60 383 466 1.4E-17 T 29-03-2018 Y880_RS24190 52c6c342f610b5d2d564aea994e3b4ba 476 SMART SM00448 5 116 5.5E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS26280 7816eaedd5989e99db21f3945ab4f7a1 567 Gene3D G3DSA:1.20.91.10 239 321 1.8E-7 T 29-03-2018 Y880_RS26280 7816eaedd5989e99db21f3945ab4f7a1 567 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 2.7E-73 T 29-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 Y880_RS26280 7816eaedd5989e99db21f3945ab4f7a1 567 Pfam PF02254 TrkA-N domain 424 537 6.0E-23 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y880_RS26280 7816eaedd5989e99db21f3945ab4f7a1 567 Pfam PF00999 Sodium/hydrogen exchanger family 12 384 4.2E-76 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y880_RS26280 7816eaedd5989e99db21f3945ab4f7a1 567 SUPERFAMILY SSF51735 422 549 2.23E-26 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26280 7816eaedd5989e99db21f3945ab4f7a1 567 Gene3D G3DSA:3.40.50.720 416 537 1.6E-18 T 29-03-2018 Y880_RS27360 974a1c1b44d5fb72e9a1f9e2fe58b495 316 Gene3D G3DSA:3.20.20.140 1 313 7.2E-78 T 29-03-2018 Y880_RS27360 974a1c1b44d5fb72e9a1f9e2fe58b495 316 SUPERFAMILY SSF51556 2 312 1.7E-84 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS27360 974a1c1b44d5fb72e9a1f9e2fe58b495 316 Pfam PF00962 Adenosine/AMP deaminase 8 310 2.1E-72 T 29-03-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 Y880_RS27360 974a1c1b44d5fb72e9a1f9e2fe58b495 316 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 8 312 7.0E-110 T 29-03-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 Y880_RS27360 974a1c1b44d5fb72e9a1f9e2fe58b495 316 Hamap MF_01962 Adenine deaminase. 4 316 86.708 T 29-03-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Y880_RS23530 a38cb7edbe096798f6721f32d25879c8 216 SUPERFAMILY SSF56112 15 157 3.24E-16 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS23530 a38cb7edbe096798f6721f32d25879c8 216 Gene3D G3DSA:3.90.1200.10 28 215 1.4E-7 T 29-03-2018 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 658 739 2.9E-25 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 538 556 1.1E-37 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 614 1.1E-37 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 496 514 1.1E-37 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 567 585 1.1E-37 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 SUPERFAMILY SSF52540 173 427 9.68E-71 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 740 0.0 T 29-03-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 SUPERFAMILY SSF81923 1 142 5.1E-61 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 SUPERFAMILY SSF52540 442 744 1.52E-80 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 SMART SM00382 492 659 1.6E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 SMART SM00382 211 356 5.4E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Gene3D G3DSA:1.10.8.60 658 758 3.0E-22 T 29-03-2018 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 307 319 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 7.4E-16 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 491 652 3.1E-49 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 523 541 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Gene3D G3DSA:3.40.50.300 455 656 1.9E-46 T 29-03-2018 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Gene3D G3DSA:3.40.50.300 170 355 5.3E-28 T 29-03-2018 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 216 328 5.8E-12 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Gene3D G3DSA:1.10.8.60 356 454 1.6E-27 T 29-03-2018 Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 SMART SM01086 658 748 3.0E-33 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS10515 3e54ac9fd6ff3c4b41e320f6db133cf0 758 Gene3D G3DSA:1.10.1780.10 1 143 2.8E-27 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 411 43.118 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 9.5E-27 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 368 381 9.5E-27 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 9.5E-27 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 9.5E-27 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 9.5E-27 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 SUPERFAMILY SSF51419 26 282 4.97E-81 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 280 1.5E-80 T 29-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 Gene3D G3DSA:2.40.37.10 261 415 2.2E-49 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 410 2.2E-162 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 SUPERFAMILY SSF50621 255 411 1.15E-53 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 5.0E-30 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 5.0E-30 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 5.0E-30 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 378 400 5.0E-30 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 Gene3D G3DSA:3.20.20.10 34 260 6.0E-59 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 29-03-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Y880_RS24995 547ba5556f547a4014d8a15ae7e8c324 415 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 30 368 2.6E-25 T 29-03-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 5 76 2.0E-8 T 29-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 SUPERFAMILY SSF46767 78 158 4.05E-31 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 Gene3D G3DSA:1.10.10.10 75 160 2.3E-33 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 SUPERFAMILY SSF53155 5 84 2.94E-16 T 29-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 159 41.728 T 29-03-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 80 158 1.9E-31 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 79 158 4.9E-35 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS01750 ca24b024ed0e0052bbf948d1b64e6be6 173 Gene3D G3DSA:3.30.160.70 1 74 3.4E-18 T 29-03-2018 Y880_RS19690 f636b39349c02df05fbc530638930311 721 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 35 701 2.0E-221 T 29-03-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 Y880_RS19690 f636b39349c02df05fbc530638930311 721 SUPERFAMILY SSF52540 343 382 8.63E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19690 f636b39349c02df05fbc530638930311 721 SUPERFAMILY SSF52540 521 678 8.63E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19690 f636b39349c02df05fbc530638930311 721 SUPERFAMILY SSF52540 411 442 8.63E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19690 f636b39349c02df05fbc530638930311 721 Gene3D G3DSA:3.40.50.300 164 419 1.2E-54 T 29-03-2018 Y880_RS19690 f636b39349c02df05fbc530638930311 721 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 43 699 49.028 T 29-03-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 Y880_RS19690 f636b39349c02df05fbc530638930311 721 Pfam PF13538 UvrD-like helicase C-terminal domain 629 676 8.2E-15 T 29-03-2018 IPR027785 UvrD-like helicase C-terminal domain Y880_RS19690 f636b39349c02df05fbc530638930311 721 SUPERFAMILY SSF52540 37 424 1.61E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19690 f636b39349c02df05fbc530638930311 721 Gene3D G3DSA:3.40.50.300 429 690 1.7E-28 T 29-03-2018 Y880_RS19690 f636b39349c02df05fbc530638930311 721 Pfam PF13604 AAA domain 213 380 1.3E-29 T 29-03-2018 Y880_RS27365 5c16582b5f6b9f270257a190a6bdf11a 181 Pfam PF08281 Sigma-70, region 4 113 164 4.4E-16 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS27365 5c16582b5f6b9f270257a190a6bdf11a 181 SUPERFAMILY SSF88946 17 93 1.69E-13 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS27365 5c16582b5f6b9f270257a190a6bdf11a 181 Gene3D G3DSA:1.10.1740.10 3 93 5.4E-13 T 29-03-2018 Y880_RS27365 5c16582b5f6b9f270257a190a6bdf11a 181 Pfam PF04542 Sigma-70 region 2 21 81 8.7E-15 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS27365 5c16582b5f6b9f270257a190a6bdf11a 181 Gene3D G3DSA:1.10.10.10 94 174 2.3E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27365 5c16582b5f6b9f270257a190a6bdf11a 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 165 5.2E-25 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS27365 5c16582b5f6b9f270257a190a6bdf11a 181 SUPERFAMILY SSF88659 88 169 4.49E-16 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:1.10.10.60 366 445 2.6E-17 T 29-03-2018 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 221 236 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 SMART SM00382 155 298 8.5E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:1.10.8.60 308 365 8.7E-25 T 29-03-2018 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 Pfam PF00072 Response regulator receiver domain 7 115 2.4E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:3.40.50.2300 1 142 2.7E-35 T 29-03-2018 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 SUPERFAMILY SSF52172 1 178 3.7E-44 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 SMART SM00448 4 115 7.0E-35 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 SUPERFAMILY SSF52540 135 377 1.15E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 SUPERFAMILY SSF46689 349 445 3.99E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 Pfam PF02954 Bacterial regulatory protein, Fis family 402 442 2.3E-16 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 Pfam PF00158 Sigma-54 interaction domain 135 301 5.2E-67 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 348 357 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 159 172 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 408 425 1.5E-12 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 445 1.5E-12 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS21070 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:3.40.50.300 143 307 1.1E-25 T 29-03-2018 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 SUPERFAMILY SSF53335 85 277 4.57E-56 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 PIRSF PIRSF000410 3 280 5.7E-95 T 29-03-2018 IPR026024 Chemotaxis protein methyltransferase CheR Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 Gene3D G3DSA:3.40.50.150 84 280 2.1E-45 T 29-03-2018 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 SUPERFAMILY SSF47757 12 84 1.57E-18 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 Pfam PF01739 CheR methyltransferase, SAM binding domain 85 276 6.5E-56 T 29-03-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 PRINTS PR00996 Glutamate methyltransferase family signature 220 234 3.3E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 PRINTS PR00996 Glutamate methyltransferase family signature 239 262 3.3E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 PRINTS PR00996 Glutamate methyltransferase family signature 148 164 3.3E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 PRINTS PR00996 Glutamate methyltransferase family signature 41 54 3.3E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 PRINTS PR00996 Glutamate methyltransferase family signature 78 90 3.3E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 PRINTS PR00996 Glutamate methyltransferase family signature 114 134 3.3E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 SMART SM00138 19 280 8.6E-93 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 Gene3D G3DSA:1.10.155.10 11 83 1.1E-19 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS27500 63e58411f4a057e13581fa619d717c7e 280 Pfam PF03705 CheR methyltransferase, all-alpha domain 20 72 1.3E-15 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS26370 a7ccff6bd3f54687dda5acd52fa7f0f0 134 SUPERFAMILY SSF109635 1 92 3.92E-24 T 29-03-2018 Y880_RS26370 a7ccff6bd3f54687dda5acd52fa7f0f0 134 SUPERFAMILY SSF57716 93 131 2.71E-9 T 29-03-2018 Y880_RS26370 a7ccff6bd3f54687dda5acd52fa7f0f0 134 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 91 126 4.2E-11 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y880_RS26370 a7ccff6bd3f54687dda5acd52fa7f0f0 134 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 11 132 27.461 T 29-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y880_RS26370 a7ccff6bd3f54687dda5acd52fa7f0f0 134 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 15 123 4.5E-40 T 29-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y880_RS21060 350ef54ea22c43ded4966594c4d6daca 81 Gene3D G3DSA:2.30.170.10 40 80 6.1E-7 T 29-03-2018 Y880_RS06960 ae18a263e6cf70d97f979f1dce9169dd 311 Gene3D G3DSA:1.10.10.10 2 85 4.7E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06960 ae18a263e6cf70d97f979f1dce9169dd 311 SUPERFAMILY SSF46785 4 87 1.41E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06960 ae18a263e6cf70d97f979f1dce9169dd 311 Pfam PF03466 LysR substrate binding domain 90 295 4.8E-40 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS06960 ae18a263e6cf70d97f979f1dce9169dd 311 Gene3D G3DSA:3.40.190.10 181 266 7.1E-18 T 29-03-2018 Y880_RS06960 ae18a263e6cf70d97f979f1dce9169dd 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.4E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06960 ae18a263e6cf70d97f979f1dce9169dd 311 Gene3D G3DSA:3.40.190.10 93 180 1.2E-13 T 29-03-2018 Y880_RS06960 ae18a263e6cf70d97f979f1dce9169dd 311 SUPERFAMILY SSF53850 90 298 1.72E-40 T 29-03-2018 Y880_RS03870 50d5aca2966fac2a83191ac5bd189e38 422 Gene3D G3DSA:2.70.50.60 264 404 1.2E-19 T 29-03-2018 Y880_RS03870 50d5aca2966fac2a83191ac5bd189e38 422 SUPERFAMILY SSF52540 37 236 1.63E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03870 50d5aca2966fac2a83191ac5bd189e38 422 Pfam PF00005 ABC transporter 45 177 9.4E-19 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS03870 50d5aca2966fac2a83191ac5bd189e38 422 Pfam PF14524 Wzt C-terminal domain 269 404 2.5E-19 T 29-03-2018 IPR029439 Wzt, C-terminal Y880_RS03870 50d5aca2966fac2a83191ac5bd189e38 422 SMART SM00382 54 234 2.1E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS03870 50d5aca2966fac2a83191ac5bd189e38 422 Gene3D G3DSA:3.40.50.300 5 263 2.3E-46 T 29-03-2018 Y880_RS03870 50d5aca2966fac2a83191ac5bd189e38 422 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 Gene3D G3DSA:2.70.150.10 36 275 1.8E-40 T 29-03-2018 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 17 902 0.0 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 375 381 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 Pfam PF00690 Cation transporter/ATPase, N-terminus 29 94 3.5E-14 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SMART SM00831 26 99 8.8E-17 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 771 787 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 286 302 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 719 730 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 407 420 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 303 322 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 856 877 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 701 716 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 806 827 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 PRINTS PR01836 Magnesium-transporting ATPase signature 751 764 9.2E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 Pfam PF00122 E1-E2 ATPase 147 353 3.8E-43 T 29-03-2018 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 Pfam PF00702 haloacid dehalogenase-like hydrolase 369 657 6.2E-20 T 29-03-2018 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SUPERFAMILY SSF81653 161 273 2.35E-26 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SUPERFAMILY SSF81665 274 367 4.05E-99 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SUPERFAMILY SSF81665 692 900 4.05E-99 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SUPERFAMILY SSF81665 42 148 4.05E-99 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SUPERFAMILY SSF56784 371 391 1.48E-37 T 29-03-2018 IPR023214 HAD-like domain Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SUPERFAMILY SSF56784 493 742 1.48E-37 T 29-03-2018 IPR023214 HAD-like domain Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 392 7.6E-20 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 732 1.3E-28 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 Pfam PF00689 Cation transporting ATPase, C-terminus 726 893 4.7E-16 T 29-03-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 Gene3D G3DSA:3.40.1110.10 331 550 3.5E-37 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 Gene3D G3DSA:1.20.1110.10 566 898 2.2E-52 T 29-03-2018 Y880_RS22635 4fd5dc980844cfefc5cb4f21c3d01996 903 SUPERFAMILY SSF81660 368 551 6.1E-36 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y880_RS02850 7839cc5996764f382469e19b37e4a11a 223 SUPERFAMILY SSF48150 37 182 2.12E-39 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y880_RS02850 7839cc5996764f382469e19b37e4a11a 223 Gene3D G3DSA:1.10.340.30 34 150 4.5E-26 T 29-03-2018 Y880_RS02850 7839cc5996764f382469e19b37e4a11a 223 Pfam PF03352 Methyladenine glycosylase 39 132 2.9E-18 T 29-03-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.2E-32 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.2E-32 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.2E-32 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.2E-32 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 Gene3D G3DSA:3.40.50.300 1 79 3.3E-8 T 29-03-2018 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 PIRSF PIRSF006641 1 366 1.3E-159 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 SUPERFAMILY SSF81271 282 363 5.01E-38 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 Gene3D G3DSA:1.10.150.300 110 202 3.1E-26 T 29-03-2018 IPR023192 TGS-like domain Reactome: R-HSA-114608 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 5.2E-162 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 SUPERFAMILY SSF52540 3 304 1.74E-81 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 2.1E-41 T 29-03-2018 IPR013029 Domain of unknown function DUF933 Reactome: R-HSA-114608 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 Gene3D G3DSA:3.10.20.30 266 365 2.1E-47 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 45.261 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Y880_RS21740 1f09514349a2e4a5af6a81dccb56358b 366 Pfam PF01926 50S ribosome-binding GTPase 5 121 5.0E-22 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 Pfam PF00037 4Fe-4S binding domain 34 56 3.1E-6 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 SUPERFAMILY SSF54862 3 101 3.35E-22 T 29-03-2018 Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 Gene3D G3DSA:3.30.70.20 2 45 2.0E-11 T 29-03-2018 Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.9E-18 T 29-03-2018 IPR000813 7Fe ferredoxin GO:0009055 Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.9E-18 T 29-03-2018 IPR000813 7Fe ferredoxin GO:0009055 Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.9E-18 T 29-03-2018 IPR000813 7Fe ferredoxin GO:0009055 Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 Gene3D G3DSA:3.30.70.20 46 109 5.1E-7 T 29-03-2018 Y880_RS11015 87b5db5063e260f18e64edbdcc31346c 112 Pfam PF11953 Domain of unknown function (DUF3470) 66 109 1.5E-14 T 29-03-2018 IPR022569 Ferredoxin, C-terminal Y880_RS16425 cbfb8b68f9452577f28cbbc4968e9e3f 245 Gene3D G3DSA:3.40.1160.10 1 244 4.4E-44 T 29-03-2018 Y880_RS16425 cbfb8b68f9452577f28cbbc4968e9e3f 245 Pfam PF00696 Amino acid kinase family 13 222 1.0E-26 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS16425 cbfb8b68f9452577f28cbbc4968e9e3f 245 SUPERFAMILY SSF53633 10 242 7.99E-73 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS16425 cbfb8b68f9452577f28cbbc4968e9e3f 245 PIRSF PIRSF005650 7 245 3.0E-89 T 29-03-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Y880_RS16425 cbfb8b68f9452577f28cbbc4968e9e3f 245 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 12 243 8.9E-99 T 29-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Y880_RS16425 cbfb8b68f9452577f28cbbc4968e9e3f 245 Hamap MF_01220_B Uridylate kinase [pyrH]. 10 243 44.024 T 29-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Y880_RS29040 ce4d1d3f276619786a5089a9fa6c45d4 802 Gene3D G3DSA:2.170.130.10 109 261 2.8E-21 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS29040 ce4d1d3f276619786a5089a9fa6c45d4 802 SMART SM00965 57 108 5.9E-8 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS29040 ce4d1d3f276619786a5089a9fa6c45d4 802 SUPERFAMILY SSF56935 111 802 1.63E-140 T 29-03-2018 Y880_RS29040 ce4d1d3f276619786a5089a9fa6c45d4 802 Pfam PF07715 TonB-dependent Receptor Plug Domain 151 248 2.1E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS29040 ce4d1d3f276619786a5089a9fa6c45d4 802 Pfam PF00593 TonB dependent receptor 322 801 4.1E-62 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS29040 ce4d1d3f276619786a5089a9fa6c45d4 802 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 151 801 1.3E-121 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS29040 ce4d1d3f276619786a5089a9fa6c45d4 802 Gene3D G3DSA:2.40.170.20 262 802 7.5E-88 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS20875 02105450830067427afd80bc8133af87 850 Gene3D G3DSA:3.40.50.80 705 849 5.3E-26 T 29-03-2018 Y880_RS20875 02105450830067427afd80bc8133af87 850 Gene3D G3DSA:2.40.30.10 543 701 1.1E-19 T 29-03-2018 Y880_RS20875 02105450830067427afd80bc8133af87 850 Pfam PF00258 Flavodoxin 393 522 5.9E-25 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00369 Flavodoxin signature 471 481 5.4E-6 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00369 Flavodoxin signature 392 405 5.4E-6 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00369 Flavodoxin signature 440 451 5.4E-6 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 Pfam PF00175 Oxidoreductase NAD-binding domain 719 823 2.9E-11 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 SUPERFAMILY SSF52343 707 850 3.93E-36 T 29-03-2018 Y880_RS20875 02105450830067427afd80bc8133af87 850 SUPERFAMILY SSF52218 388 531 8.6E-38 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS20875 02105450830067427afd80bc8133af87 850 Pfam PF03929 PepSY-associated TM region 6 366 1.7E-66 T 29-03-2018 IPR005625 PepSY-associated TM protein Y880_RS20875 02105450830067427afd80bc8133af87 850 SUPERFAMILY SSF63380 539 709 1.67E-24 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 Gene3D G3DSA:3.40.50.360 365 538 3.3E-31 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 682 691 2.3E-12 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 579 589 2.3E-12 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 786 802 2.3E-12 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 654 661 2.3E-12 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 718 737 2.3E-12 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 809 817 2.3E-12 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS20875 02105450830067427afd80bc8133af87 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 742 751 2.3E-12 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS24025 15d2a33cf8017e31522b7274e0a48927 510 SUPERFAMILY SSF48557 7 494 1.73E-162 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS24025 15d2a33cf8017e31522b7274e0a48927 510 Pfam PF00221 Aromatic amino acid lyase 14 470 1.4E-160 T 29-03-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Y880_RS24025 15d2a33cf8017e31522b7274e0a48927 510 Gene3D G3DSA:1.10.275.10 6 198 5.0E-54 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS24025 15d2a33cf8017e31522b7274e0a48927 510 Gene3D G3DSA:1.20.200.10 199 507 7.7E-116 T 29-03-2018 Y880_RS20870 220587db52ca1e341ee07dbd35e44e82 299 SUPERFAMILY SSF51197 98 239 3.3E-19 T 29-03-2018 Y880_RS20870 220587db52ca1e341ee07dbd35e44e82 299 Gene3D G3DSA:2.60.120.330 61 245 8.8E-44 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS20870 220587db52ca1e341ee07dbd35e44e82 299 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 222 2.7E-48 T 29-03-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 Y880_RS27285 2399f5cb2b8b95f015b29c44c1ff6d86 456 SUPERFAMILY SSF51338 47 109 8.63E-7 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS27285 2399f5cb2b8b95f015b29c44c1ff6d86 456 SUPERFAMILY SSF51556 93 396 1.0E-100 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS27285 2399f5cb2b8b95f015b29c44c1ff6d86 456 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 50 449 2.0E-181 T 29-03-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 Y880_RS27285 2399f5cb2b8b95f015b29c44c1ff6d86 456 Gene3D G3DSA:3.20.20.140 102 382 1.0E-70 T 29-03-2018 Y880_RS27285 2399f5cb2b8b95f015b29c44c1ff6d86 456 Gene3D G3DSA:2.30.40.10 383 456 0.32 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS27285 2399f5cb2b8b95f015b29c44c1ff6d86 456 Gene3D G3DSA:2.30.40.10 30 101 1.8E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS27285 2399f5cb2b8b95f015b29c44c1ff6d86 456 Pfam PF01979 Amidohydrolase family 91 450 3.2E-64 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS00230 9c323fde22a696c8ed99709c075a9746 85 Gene3D G3DSA:1.10.10.10 47 84 0.027 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00230 9c323fde22a696c8ed99709c075a9746 85 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 1 85 28.922 T 29-03-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair Y880_RS00230 9c323fde22a696c8ed99709c075a9746 85 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 1 85 2.2E-39 T 29-03-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair Y880_RS26525 340ddc6022528465f23c151efcf27e2c 289 Pfam PF00119 ATP synthase A chain 51 282 1.3E-55 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26525 340ddc6022528465f23c151efcf27e2c 289 Hamap MF_01393 ATP synthase subunit a [atpB]. 10 288 15.57 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26525 340ddc6022528465f23c151efcf27e2c 289 SUPERFAMILY SSF81336 99 282 3.14E-39 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26525 340ddc6022528465f23c151efcf27e2c 289 ProSitePatterns PS00449 ATP synthase a subunit signature. 217 226 - T 29-03-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26525 340ddc6022528465f23c151efcf27e2c 289 Gene3D G3DSA:1.20.120.220 98 289 5.2E-43 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26525 340ddc6022528465f23c151efcf27e2c 289 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 41 283 4.4E-41 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS27955 d6f44c334d38537c01c065c3ec4b5eda 399 Gene3D G3DSA:1.10.3210.10 139 389 3.1E-29 T 29-03-2018 Y880_RS27955 d6f44c334d38537c01c065c3ec4b5eda 399 SMART SM00448 8 123 2.7E-14 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS27955 d6f44c334d38537c01c065c3ec4b5eda 399 SUPERFAMILY SSF109604 150 397 1.35E-37 T 29-03-2018 Y880_RS27955 d6f44c334d38537c01c065c3ec4b5eda 399 SUPERFAMILY SSF52172 10 127 1.25E-22 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS27955 d6f44c334d38537c01c065c3ec4b5eda 399 Gene3D G3DSA:3.40.50.2300 1 133 1.1E-22 T 29-03-2018 Y880_RS27955 d6f44c334d38537c01c065c3ec4b5eda 399 Pfam PF00072 Response regulator receiver domain 10 123 9.7E-13 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS27955 d6f44c334d38537c01c065c3ec4b5eda 399 Pfam PF08668 HDOD domain 162 348 9.4E-40 T 29-03-2018 IPR013976 Metal-dependent hydrolase HDOD Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 SUPERFAMILY SSF63380 2 96 2.2E-26 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 243 307 5.4E-13 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 133 142 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 86 100 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 187 195 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 86 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 26 36 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 36 48 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 108 127 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 48 62 5.6E-48 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 SUPERFAMILY SSF54292 209 316 4.85E-30 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 Gene3D G3DSA:2.40.30.10 1 96 1.3E-14 T 29-03-2018 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 Gene3D G3DSA:3.40.50.80 101 218 9.8E-22 T 29-03-2018 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 SUPERFAMILY SSF52343 102 221 1.7E-28 T 29-03-2018 Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 Gene3D G3DSA:3.10.20.30 219 317 9.5E-23 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS23040 c7ab7b01dfa0636f6b74b6c27c736b0d 317 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 266 274 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS12090 66e3dc94bcb01564c04ecadf4eb2e46f 163 Gene3D G3DSA:1.10.10.10 18 148 2.3E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12090 66e3dc94bcb01564c04ecadf4eb2e46f 163 SUPERFAMILY SSF46785 15 155 2.02E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12090 66e3dc94bcb01564c04ecadf4eb2e46f 163 Pfam PF01047 MarR family 47 110 3.5E-11 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12090 66e3dc94bcb01564c04ecadf4eb2e46f 163 SMART SM00347 40 143 2.9E-14 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS19590 9b9df0300477dc738c38223795cda693 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 7.7E-67 T 29-03-2018 IPR023798 Ribosomal protein S7 domain Y880_RS19590 9b9df0300477dc738c38223795cda693 156 Gene3D G3DSA:1.10.455.10 6 156 8.0E-60 T 29-03-2018 IPR023798 Ribosomal protein S7 domain Y880_RS19590 9b9df0300477dc738c38223795cda693 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 8.4E-68 T 29-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Y880_RS19590 9b9df0300477dc738c38223795cda693 156 SUPERFAMILY SSF47973 6 149 7.72E-60 T 29-03-2018 IPR023798 Ribosomal protein S7 domain Y880_RS19590 9b9df0300477dc738c38223795cda693 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 29-03-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19590 9b9df0300477dc738c38223795cda693 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.331 T 29-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Y880_RS19590 9b9df0300477dc738c38223795cda693 156 PIRSF PIRSF002122 2 156 2.6E-59 T 29-03-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 Gene3D G3DSA:3.40.50.10490 11 139 4.4E-37 T 29-03-2018 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 Pfam PF00342 Phosphoglucose isomerase 55 545 5.7E-194 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 501 518 - T 29-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 Gene3D G3DSA:3.40.50.10490 263 516 7.0E-110 T 29-03-2018 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 Gene3D G3DSA:1.10.1390.10 517 554 4.0E-15 T 29-03-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 Gene3D G3DSA:3.40.50.10490 140 262 4.0E-43 T 29-03-2018 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 269 282 - T 29-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 49 528 40.844 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 153 172 2.6E-51 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 501 514 2.6E-51 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 469 487 2.6E-51 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 487 501 2.6E-51 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 342 363 2.6E-51 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 265 283 2.6E-51 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22140 5daab83886895ecd19799ba58766423c 554 SUPERFAMILY SSF53697 9 551 2.63E-208 T 29-03-2018 Y880_RS06230 3b2383b1e98132a85ca69accfbfd8845 500 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 5 497 9.3E-228 T 29-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 Y880_RS06230 3b2383b1e98132a85ca69accfbfd8845 500 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 500 320.973 T 29-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 9.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 9.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 247 3.4E-63 T 29-03-2018 Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.8E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.8E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.8E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.8E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.8E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.8E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 SUPERFAMILY SSF51735 4 247 1.05E-76 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 Gene3D G3DSA:3.40.50.720 40 248 7.6E-65 T 29-03-2018 Y880_RS13665 6cc4395d5bf3a7e911d95e8da108d170 248 Gene3D G3DSA:3.40.50.720 1 39 2.5E-7 T 29-03-2018 Y880_RS09305 8e5bd6a16036e323672de2f39dd64388 663 Gene3D G3DSA:3.40.50.300 7 280 2.0E-67 T 29-03-2018 Y880_RS09305 8e5bd6a16036e323672de2f39dd64388 663 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS09305 8e5bd6a16036e323672de2f39dd64388 663 SUPERFAMILY SSF52540 10 245 1.73E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09305 8e5bd6a16036e323672de2f39dd64388 663 Pfam PF02687 FtsX-like permease family 570 656 1.4E-9 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y880_RS09305 8e5bd6a16036e323672de2f39dd64388 663 Pfam PF12704 MacB-like periplasmic core domain 291 507 4.1E-37 T 29-03-2018 IPR025857 MacB-like periplasmic core domain Y880_RS09305 8e5bd6a16036e323672de2f39dd64388 663 SMART SM00382 40 227 3.9E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09305 8e5bd6a16036e323672de2f39dd64388 663 Pfam PF00005 ABC transporter 31 179 2.2E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS21340 a6880e950e6961dfb49eccdf80b8d8a9 387 SUPERFAMILY SSF111369 51 296 7.19E-75 T 29-03-2018 Y880_RS21340 a6880e950e6961dfb49eccdf80b8d8a9 387 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 370 1.7E-82 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS21340 a6880e950e6961dfb49eccdf80b8d8a9 387 Gene3D G3DSA:2.40.50.100 166 366 3.5E-6 T 29-03-2018 Y880_RS21340 a6880e950e6961dfb49eccdf80b8d8a9 387 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 289 1.3E-11 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS21340 a6880e950e6961dfb49eccdf80b8d8a9 387 Gene3D G3DSA:2.40.50.100 62 107 6.3E-16 T 29-03-2018 Y880_RS21340 a6880e950e6961dfb49eccdf80b8d8a9 387 Gene3D G3DSA:1.10.287.470 108 165 1.6E-12 T 29-03-2018 Y880_RS22355 72c69b8a89513a0de9813425ca444d65 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 29-03-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Y880_RS22355 72c69b8a89513a0de9813425ca444d65 381 SUPERFAMILY SSF51395 223 374 2.56E-98 T 29-03-2018 Y880_RS22355 72c69b8a89513a0de9813425ca444d65 381 SUPERFAMILY SSF51395 7 193 2.56E-98 T 29-03-2018 Y880_RS22355 72c69b8a89513a0de9813425ca444d65 381 Gene3D G3DSA:3.20.20.70 2 379 1.0E-96 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS22355 72c69b8a89513a0de9813425ca444d65 381 PIRSF PIRSF000138 2 379 2.6E-122 T 29-03-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Y880_RS22355 72c69b8a89513a0de9813425ca444d65 381 Pfam PF01070 FMN-dependent dehydrogenase 13 375 1.7E-125 T 29-03-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Y880_RS22355 72c69b8a89513a0de9813425ca444d65 381 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 75.027 T 29-03-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 SUPERFAMILY SSF53850 97 304 6.43E-33 T 29-03-2018 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 Gene3D G3DSA:1.10.10.10 2 89 9.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 Pfam PF03466 LysR substrate binding domain 95 301 1.7E-32 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 SUPERFAMILY SSF46785 5 116 4.17E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.6E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 Gene3D G3DSA:3.40.190.10 183 271 9.1E-13 T 29-03-2018 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 6.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 6.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 6.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 TIGRFAM TIGR02424 TF_pcaQ: pca operon transcription factor PcaQ 6 302 8.3E-115 T 29-03-2018 IPR012787 Pca transcription factor PcaQ GO:0003677|GO:0019619|GO:0045893 Y880_RS27380 d8b0fd06d66b48152b825178c9758741 305 Gene3D G3DSA:3.40.190.10 93 182 7.5E-19 T 29-03-2018 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 Pfam PF00293 NUDIX domain 145 258 2.9E-22 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 SUPERFAMILY SSF55811 8 112 2.23E-23 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 19 107 1.0E-11 T 29-03-2018 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 109 140 1.5E-11 T 29-03-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 SUPERFAMILY SSF55811 94 260 1.33E-45 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 Hamap MF_00297 NADH pyrophosphatase [nudC]. 8 273 50.644 T 29-03-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 Gene3D G3DSA:3.90.79.10 142 273 2.3E-37 T 29-03-2018 Y880_RS06245 74cdbe97249da67a29a9234d57241b3b 278 ProSitePatterns PS00893 Nudix box signature. 175 196 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS09275 4d756d06b33931c371e95f2fbc889168 107 Gene3D G3DSA:1.10.10.10 2 81 3.1E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09275 4d756d06b33931c371e95f2fbc889168 107 PIRSF PIRSF029502 1 98 1.8E-50 T 29-03-2018 IPR016921 Uncharacterised conserved protein UCP029502 Y880_RS09275 4d756d06b33931c371e95f2fbc889168 107 SUPERFAMILY SSF46785 6 74 2.66E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23965 b15cdaa089873c05ab01301cb1fabc6a 158 SUPERFAMILY SSF55811 5 133 8.53E-20 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS23965 b15cdaa089873c05ab01301cb1fabc6a 158 Pfam PF00293 NUDIX domain 9 127 2.3E-11 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS23965 b15cdaa089873c05ab01301cb1fabc6a 158 Gene3D G3DSA:3.90.79.10 1 145 3.0E-19 T 29-03-2018 Y880_RS11515 a620127baebaa8a0b43be2d8246fdfb2 332 Gene3D G3DSA:3.20.20.70 12 253 6.5E-43 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS11515 a620127baebaa8a0b43be2d8246fdfb2 332 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 10 331 50.859 T 29-03-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Y880_RS11515 a620127baebaa8a0b43be2d8246fdfb2 332 SUPERFAMILY SSF51395 15 325 9.89E-73 T 29-03-2018 Y880_RS11515 a620127baebaa8a0b43be2d8246fdfb2 332 PIRSF PIRSF006621 5 330 6.8E-75 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS11515 a620127baebaa8a0b43be2d8246fdfb2 332 Pfam PF01207 Dihydrouridine synthase (Dus) 18 311 4.3E-83 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS11515 a620127baebaa8a0b43be2d8246fdfb2 332 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 14 329 3.9E-139 T 29-03-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Y880_RS11515 a620127baebaa8a0b43be2d8246fdfb2 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 97 115 - T 29-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS21845 f0612122032a5fdf51a4eb05b4651187 742 Gene3D G3DSA:2.40.170.20 152 742 8.6E-50 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS21845 f0612122032a5fdf51a4eb05b4651187 742 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 49 742 1.6E-90 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS21845 f0612122032a5fdf51a4eb05b4651187 742 Pfam PF00593 TonB dependent receptor 274 740 9.8E-31 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS21845 f0612122032a5fdf51a4eb05b4651187 742 Gene3D G3DSA:2.170.130.10 28 151 7.0E-26 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS21845 f0612122032a5fdf51a4eb05b4651187 742 SUPERFAMILY SSF56935 477 742 1.15E-93 T 29-03-2018 Y880_RS21845 f0612122032a5fdf51a4eb05b4651187 742 SUPERFAMILY SSF56935 35 446 1.15E-93 T 29-03-2018 Y880_RS21845 f0612122032a5fdf51a4eb05b4651187 742 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 150 2.2E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS29025 e19ca1471e2cd9baa130a0a17f1263ac 316 Gene3D G3DSA:2.120.10.30 242 305 0.037 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS29025 e19ca1471e2cd9baa130a0a17f1263ac 316 Gene3D G3DSA:2.120.10.30 110 241 2.2E-16 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS29025 e19ca1471e2cd9baa130a0a17f1263ac 316 Gene3D G3DSA:2.120.10.30 15 109 2.0E-6 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS29025 e19ca1471e2cd9baa130a0a17f1263ac 316 SUPERFAMILY SSF101898 31 274 2.07E-31 T 29-03-2018 Y880_RS29025 e19ca1471e2cd9baa130a0a17f1263ac 316 PIRSF PIRSF026412 1 316 1.3E-122 T 29-03-2018 IPR011217 Streptogramin lyase GO:0000287|GO:0016835|GO:0017001|GO:0046677 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 SUPERFAMILY SSF55347 179 486 4.58E-114 T 29-03-2018 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 Gene3D G3DSA:3.30.360.10 186 488 1.1E-126 T 29-03-2018 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 187 485 1.6E-116 T 29-03-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 8 485 2.3E-174 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 PIRSF PIRSF000110 2 488 3.3E-171 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 Gene3D G3DSA:3.40.50.720 6 185 4.0E-59 T 29-03-2018 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 SUPERFAMILY SSF51735 7 187 6.89E-54 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 140 153 1.7E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 164 192 1.7E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 216 233 1.7E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 234 250 1.7E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 325 351 1.7E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 8 487 90.046 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 184 4.7E-53 T 29-03-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS13925 b71e37e65cbc4db2259fc4917dd53637 489 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 174 180 - T 29-03-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 SMART SM00283 452 713 1.7E-81 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 Gene3D G3DSA:1.10.287.950 483 679 2.8E-51 T 29-03-2018 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 SMART SM00304 383 437 1.1E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 Pfam PF02743 Cache domain 90 333 8.4E-17 T 29-03-2018 IPR033479 Double Cache domain 1 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 Gene3D G3DSA:3.30.450.20 228 340 1.4E-9 T 29-03-2018 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 525 681 1.9E-45 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 Gene3D G3DSA:3.30.450.20 90 227 9.4E-22 T 29-03-2018 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 SUPERFAMILY SSF58104 405 713 2.88E-82 T 29-03-2018 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 Pfam PF00672 HAMP domain 384 433 1.1E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10695 29abd09e4b1928e3d42794b90da766ed 714 Gene3D G3DSA:1.10.287.950 382 482 2.4E-8 T 29-03-2018 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 SUPERFAMILY SSF47757 5 71 4.71E-15 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 Gene3D G3DSA:1.10.155.10 1 70 1.4E-12 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 SUPERFAMILY SSF53335 72 265 3.92E-48 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 SMART SM00138 5 271 4.5E-95 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 27 40 1.2E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 1.2E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 230 253 1.2E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 65 77 1.2E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 142 158 1.2E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 211 225 1.2E-43 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 Pfam PF01739 CheR methyltransferase, SAM binding domain 72 268 1.6E-67 T 29-03-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 Gene3D G3DSA:3.40.50.150 71 273 5.0E-45 T 29-03-2018 Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 PIRSF PIRSF000410 1 274 1.7E-75 T 29-03-2018 IPR026024 Chemotaxis protein methyltransferase CheR Y880_RS14825 0b10ba61fddaca5c0f11b388045f8bc8 274 Pfam PF03705 CheR methyltransferase, all-alpha domain 6 56 2.5E-13 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS13590 978982f6d4c8becb3d2915221fb0a85a 211 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 6 201 3.8E-45 T 29-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Y880_RS13590 978982f6d4c8becb3d2915221fb0a85a 211 SUPERFAMILY SSF51366 5 205 8.63E-62 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Y880_RS13590 978982f6d4c8becb3d2915221fb0a85a 211 Gene3D G3DSA:3.20.20.70 3 208 4.4E-68 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS13590 978982f6d4c8becb3d2915221fb0a85a 211 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 4 206 41.819 T 29-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 1.6E-17 T 29-03-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.99.4 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Gene3D G3DSA:3.40.228.10 225 663 3.8E-100 T 29-03-2018 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 1131 1158 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Gene3D G3DSA:3.40.50.740 108 212 5.0E-6 T 29-03-2018 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 780 797 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Pfam PF01568 Molydopterin dinucleotide binding domain 1094 1208 1.3E-22 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Gene3D G3DSA:3.30.2070.10 798 839 4.6E-4 T 29-03-2018 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 29-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 SUPERFAMILY SSF50692 1085 1241 4.07E-48 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Pfam PF00384 Molybdopterin oxidoreductase 108 836 1.1E-163 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Gene3D G3DSA:2.40.40.20 1054 1244 1.0E-44 T 29-03-2018 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1241 0.0 T 29-03-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 SMART SM00926 43 105 5.5E-8 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Gene3D G3DSA:4.10.1200.10 1 26 1.2E-13 T 29-03-2018 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 SUPERFAMILY SSF53706 4 1076 0.0 T 29-03-2018 Y880_RS17585 317212e50e775062aff4852dd0d3a25d 1261 Gene3D G3DSA:2.20.25.90 55 98 1.3E-28 T 29-03-2018 Y880_RS06340 6592ec4b5b00717abd7aaf89aad6d061 120 Pfam PF08980 Domain of unknown function (DUF1883) 21 95 2.8E-32 T 29-03-2018 IPR015073 Atu1913-like Y880_RS06340 6592ec4b5b00717abd7aaf89aad6d061 120 SUPERFAMILY SSF141099 20 116 1.28E-37 T 29-03-2018 IPR015073 Atu1913-like Y880_RS06340 6592ec4b5b00717abd7aaf89aad6d061 120 Gene3D G3DSA:4.10.1210.10 21 113 4.1E-36 T 29-03-2018 IPR015073 Atu1913-like Y880_RS02095 4bd294f9ab97ed6b1406dd9f7881b629 115 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 17 105 8.2E-27 T 29-03-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 Y880_RS02095 4bd294f9ab97ed6b1406dd9f7881b629 115 Pfam PF03334 Na+/H+ antiporter subunit 17 97 3.1E-27 T 29-03-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 SMART SM01382 124 252 1.5E-90 T 29-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 Gene3D G3DSA:2.30.30.30 119 195 1.0E-29 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 SUPERFAMILY SSF50104 127 272 1.32E-60 T 29-03-2018 IPR008991 Translation protein SH3-like domain Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 Gene3D G3DSA:4.10.950.10 197 273 3.1E-35 T 29-03-2018 IPR014726 Ribosomal protein L2, domain 3 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 29-03-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 SMART SM01383 42 118 1.3E-43 T 29-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 PIRSF PIRSF002158 12 273 1.2E-100 T 29-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 1.7E-128 T 29-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 Gene3D G3DSA:2.40.50.140 1 114 2.2E-46 T 29-03-2018 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.774 T 29-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.1E-32 T 29-03-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 8.4E-56 T 29-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Y880_RS19560 3a8202fe29993bc194e7292d6f7d4d8e 273 SUPERFAMILY SSF50249 2 125 1.27E-47 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 Pfam PF07695 7TM diverse intracellular signalling 231 434 1.6E-37 T 29-03-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 SMART SM00267 485 657 3.5E-64 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 Gene3D G3DSA:1.20.1600.10 89 493 3.2E-4 T 29-03-2018 Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 Pfam PF07696 7TMR-DISM extracellular 2 85 219 8.8E-26 T 29-03-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 492 656 1.6E-48 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 Gene3D G3DSA:3.30.70.270 494 665 3.3E-60 T 29-03-2018 Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 SUPERFAMILY SSF55073 501 656 3.69E-50 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS23160 a8278d85bd004f0365a175a006aeb575 680 Pfam PF00990 Diguanylate cyclase, GGDEF domain 496 651 7.8E-49 T 29-03-2018 IPR000160 GGDEF domain Y880_RS17935 1f51be8b5f25b377479cee1b71978da1 93 SUPERFAMILY SSF47729 3 92 7.65E-28 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS17935 1f51be8b5f25b377479cee1b71978da1 93 Gene3D G3DSA:4.10.520.10 1 93 9.0E-29 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS17935 1f51be8b5f25b377479cee1b71978da1 93 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 1.6E-11 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS17935 1f51be8b5f25b377479cee1b71978da1 93 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 1.6E-11 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS17935 1f51be8b5f25b377479cee1b71978da1 93 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 1.6E-11 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS17935 1f51be8b5f25b377479cee1b71978da1 93 SMART SM00411 3 92 1.2E-28 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS17935 1f51be8b5f25b377479cee1b71978da1 93 Pfam PF00216 Bacterial DNA-binding protein 3 92 3.1E-28 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 SMART SM00244 90 250 2.8E-33 T 29-03-2018 IPR001107 Band 7 domain Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 PRINTS PR00721 Stomatin signature 226 244 6.5E-7 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 PRINTS PR00721 Stomatin signature 97 119 6.5E-7 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 PRINTS PR00721 Stomatin signature 144 165 6.5E-7 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 Pfam PF01145 SPFH domain / Band 7 family 94 265 2.1E-29 T 29-03-2018 IPR001107 Band 7 domain Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 Pfam PF12221 Bacterial membrane protein N terminal 1 55 1.8E-15 T 29-03-2018 IPR020980 Menbrane protein HflK, N-terminal Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 SUPERFAMILY SSF117892 122 255 9.94E-24 T 29-03-2018 IPR001107 Band 7 domain Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 TIGRFAM TIGR01933 hflK: HflK protein 92 353 9.8E-113 T 29-03-2018 IPR010201 HflK GO:0016021 Y880_RS23235 a1a580d99c6ba17d4fe71aa1780294df 400 Gene3D G3DSA:1.20.5.620 259 305 2.9E-4 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain Y880_RS08920 c1ab7fc53de14588cb989dad7eb8b018 169 SUPERFAMILY SSF56601 13 169 1.07E-41 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS08920 c1ab7fc53de14588cb989dad7eb8b018 169 Gene3D G3DSA:3.40.710.10 3 169 4.1E-40 T 29-03-2018 Y880_RS08920 c1ab7fc53de14588cb989dad7eb8b018 169 Pfam PF00144 Beta-lactamase 16 168 6.0E-36 T 29-03-2018 IPR001466 Beta-lactamase-related Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 Gene3D G3DSA:3.40.190.10 204 311 5.9E-11 T 29-03-2018 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 Gene3D G3DSA:3.40.190.10 19 203 4.7E-28 T 29-03-2018 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 Pfam PF13416 Bacterial extracellular solute-binding protein 40 301 1.8E-29 T 29-03-2018 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 SUPERFAMILY SSF53850 24 346 1.18E-82 T 29-03-2018 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PIRSF PIRSF019574 5 347 5.7E-109 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 120 136 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 73 87 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 89 102 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 167 186 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 293 319 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 204 223 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 248 267 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 30 46 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28250 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 46 67 1.6E-46 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 Gene3D G3DSA:1.10.8.60 334 412 8.7E-24 T 29-03-2018 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 99 596 2.4E-239 T 29-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 SUPERFAMILY SSF52540 145 393 7.98E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 SUPERFAMILY SSF140990 404 606 2.35E-77 T 29-03-2018 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 Pfam PF01434 Peptidase family M41 384 595 1.0E-81 T 29-03-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 625 37.77 T 29-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 Gene3D G3DSA:3.40.50.300 134 333 2.1E-63 T 29-03-2018 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 322 9.8E-46 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 Pfam PF06480 FtsH Extracellular 5 91 1.2E-12 T 29-03-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 ProSitePatterns PS00674 AAA-protein family signature. 293 311 - T 29-03-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Y880_RS22250 df0cdcf7573af69298f2bab61f0be212 639 SMART SM00382 186 325 6.4E-26 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS25965 2947f45669677198f71c618e46f4eca9 380 Pfam PF01757 Acyltransferase family 7 341 2.0E-26 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 SUPERFAMILY SSF69864 175 400 1.96E-93 T 29-03-2018 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 118 129 - T 29-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 399 1.8E-142 T 29-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 29-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 Gene3D G3DSA:1.20.5.470 367 400 2.1E-15 T 29-03-2018 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 Gene3D G3DSA:3.40.50.620 1 165 1.5E-30 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 Gene3D G3DSA:3.90.1260.10 166 357 1.1E-97 T 29-03-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 Pfam PF00764 Arginosuccinate synthase 8 397 8.3E-155 T 29-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 SUPERFAMILY SSF52402 5 209 3.31E-51 T 29-03-2018 Y880_RS15740 8108f5a9a8743fd0dfffc94bdbfbc065 405 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 402 52.756 T 29-03-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 23 211 1.9E-27 T 29-03-2018 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 21 43 2.6E-9 T 29-03-2018 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 181 206 2.6E-9 T 29-03-2018 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 2.6E-9 T 29-03-2018 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 Gene3D G3DSA:3.50.50.60 19 177 5.0E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 SUPERFAMILY SSF51905 19 229 9.39E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 22 41 3.3E-5 T 29-03-2018 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 181 199 3.3E-5 T 29-03-2018 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 Gene3D G3DSA:3.50.50.60 181 429 3.2E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25615 a77679f1bba75e6d525108b3bd69d010 450 SUPERFAMILY SSF51905 182 418 2.11E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 Pfam PF02163 Peptidase family M50 11 437 1.5E-83 T 29-03-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889|Reactome: R-MMU-8963889 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 Pfam PF13180 PDZ domain 227 289 6.8E-10 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 450 9.2E-124 T 29-03-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 SUPERFAMILY SSF50156 208 290 1.97E-16 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 SMART SM00228 211 280 3.2E-8 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 SMART SM00228 114 186 8.4E-6 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 Gene3D G3DSA:2.30.42.10 221 307 8.0E-18 T 29-03-2018 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 SUPERFAMILY SSF50156 87 181 9.2E-15 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS16400 24ac403d563b683373f17d773c3684b4 450 Gene3D G3DSA:2.30.42.10 125 220 3.9E-14 T 29-03-2018 Y880_RS09115 451a560615bba954f0af31adc7015f66 376 Gene3D G3DSA:3.40.50.300 26 200 5.1E-26 T 29-03-2018 Y880_RS09115 451a560615bba954f0af31adc7015f66 376 Gene3D G3DSA:1.10.8.60 202 270 1.8E-24 T 29-03-2018 Y880_RS09115 451a560615bba954f0af31adc7015f66 376 Pfam PF00158 Sigma-54 interaction domain 32 195 2.0E-69 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS09115 451a560615bba954f0af31adc7015f66 376 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 115 130 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS09115 451a560615bba954f0af31adc7015f66 376 SUPERFAMILY SSF52540 33 270 2.95E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09115 451a560615bba954f0af31adc7015f66 376 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 242 251 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS09115 451a560615bba954f0af31adc7015f66 376 SMART SM00382 49 192 6.9E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09115 451a560615bba954f0af31adc7015f66 376 SUPERFAMILY SSF46689 242 350 6.27E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09115 451a560615bba954f0af31adc7015f66 376 Gene3D G3DSA:1.10.10.60 271 354 1.9E-5 T 29-03-2018 Y880_RS09115 451a560615bba954f0af31adc7015f66 376 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 53 66 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 SUPERFAMILY SSF55874 331 469 9.17E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 Gene3D G3DSA:1.10.287.130 260 368 3.7E-9 T 29-03-2018 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 468 1.8E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 271 311 5.2E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 SMART SM00387 366 471 2.6E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 SUPERFAMILY SSF158472 219 267 6.41E-5 T 29-03-2018 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 SMART SM00388 270 328 1.8E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 SMART SM00304 217 269 3.6E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 468 1.4E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 1.4E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 1.4E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 1.4E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 SUPERFAMILY SSF47384 254 313 1.73E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 Gene3D G3DSA:3.30.565.10 369 473 1.2E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS13975 764b724a2fe6afbb40813c15147d0165 473 Pfam PF00672 HAMP domain 218 265 2.1E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS16030 1e366be7aecaad19b922237fb5127ad7 261 SUPERFAMILY SSF54506 1 260 9.89E-86 T 29-03-2018 Y880_RS16030 1e366be7aecaad19b922237fb5127ad7 261 Pfam PF02567 Phenazine biosynthesis-like protein 8 256 3.3E-62 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS16030 1e366be7aecaad19b922237fb5127ad7 261 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 259 8.0E-42 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS16030 1e366be7aecaad19b922237fb5127ad7 261 Gene3D G3DSA:3.10.310.10 1 123 1.7E-30 T 29-03-2018 Y880_RS16030 1e366be7aecaad19b922237fb5127ad7 261 PIRSF PIRSF016184 1 260 6.2E-62 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS16030 1e366be7aecaad19b922237fb5127ad7 261 Gene3D G3DSA:3.10.310.10 124 248 7.4E-41 T 29-03-2018 Y880_RS00255 692f23fbce9f418116d4785f6112dfa4 245 Pfam PF13645 L,D-transpeptidase catalytic domain 44 210 1.1E-63 T 29-03-2018 IPR032676 Putative L,D-transpeptidase catalytic domain Y880_RS14930 3da068a0ff6e46112ab28304ecf3561d 208 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 27 102 4.7E-24 T 29-03-2018 IPR022385 Rhs repeat-associated core GO:0097264 Y880_RS14930 3da068a0ff6e46112ab28304ecf3561d 208 PRINTS PR00394 RHS protein signature 46 66 1.7E-11 T 29-03-2018 IPR001826 RHS protein Y880_RS14930 3da068a0ff6e46112ab28304ecf3561d 208 PRINTS PR00394 RHS protein signature 69 88 1.7E-11 T 29-03-2018 IPR001826 RHS protein Y880_RS14930 3da068a0ff6e46112ab28304ecf3561d 208 Pfam PF15606 Bacterial toxin 34 142 206 2.3E-9 T 29-03-2018 IPR028947 Bacterial toxin 34 Y880_RS02710 226ca1ea1acfba730b9af9e7ea481709 262 Pfam PF01738 Dienelactone hydrolase family 46 258 5.5E-46 T 29-03-2018 IPR002925 Dienelactone hydrolase GO:0016787 Y880_RS02710 226ca1ea1acfba730b9af9e7ea481709 262 Gene3D G3DSA:3.40.50.1820 17 257 2.6E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS02710 226ca1ea1acfba730b9af9e7ea481709 262 SUPERFAMILY SSF53474 21 258 8.25E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS18060 8bd22bdee383c835875eb18aa7eb4670 298 Pfam PF01545 Cation efflux family 17 208 2.2E-37 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y880_RS18060 8bd22bdee383c835875eb18aa7eb4670 298 SUPERFAMILY SSF161111 9 209 9.29E-53 T 29-03-2018 Y880_RS18060 8bd22bdee383c835875eb18aa7eb4670 298 SUPERFAMILY SSF160240 212 289 8.5E-21 T 29-03-2018 Y880_RS18060 8bd22bdee383c835875eb18aa7eb4670 298 Gene3D G3DSA:1.20.1510.10 10 207 5.3E-38 T 29-03-2018 Y880_RS18060 8bd22bdee383c835875eb18aa7eb4670 298 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 15 290 1.9E-65 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y880_RS18060 8bd22bdee383c835875eb18aa7eb4670 298 Pfam PF16916 Dimerisation domain of Zinc Transporter 213 288 1.6E-22 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain Y880_RS18060 8bd22bdee383c835875eb18aa7eb4670 298 Gene3D G3DSA:3.30.70.1350 208 297 3.7E-22 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 272 285 - T 29-03-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 264 285 4.4E-37 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 233 252 4.4E-37 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 4.4E-37 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 4.4E-37 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 SUPERFAMILY SSF52943 2 286 1.83E-95 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 Pfam PF00231 ATP synthase 5 285 3.4E-96 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 286 36.72 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 Gene3D G3DSA:3.40.1380.10 42 235 1.1E-72 T 29-03-2018 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 Gene3D G3DSA:1.10.287.80 2 41 1.7E-15 T 29-03-2018 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 Gene3D G3DSA:1.10.287.80 236 281 7.1E-16 T 29-03-2018 Y880_RS26500 54d82bce207089d40a4917f143e29be5 286 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 286 1.1E-106 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 297 314 1.9E-30 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 278 296 1.9E-30 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 170 180 1.9E-30 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 257 278 1.9E-30 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 Gene3D G3DSA:3.30.2420.10 266 343 2.0E-17 T 29-03-2018 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 262 338 4.2E-21 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 263 339 1.5E-21 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS26345 3f4ebed0ff27bd8b4ffa051291cb3cef 343 SUPERFAMILY SSF74653 256 337 1.31E-24 T 29-03-2018 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 Gene3D G3DSA:3.40.50.150 96 344 2.2E-31 T 29-03-2018 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 313 319 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 Gene3D G3DSA:3.40.50.150 519 725 4.5E-39 T 29-03-2018 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 7 725 33.126 T 29-03-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 Pfam PF02926 THUMP domain 45 156 1.1E-11 T 29-03-2018 IPR004114 THUMP domain GO:0003723 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 PIRSF PIRSF037618 2 725 0.0 T 29-03-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 SUPERFAMILY SSF53335 421 720 1.01E-67 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 SUPERFAMILY SSF53335 265 384 1.17E-38 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 SUPERFAMILY SSF53335 143 224 1.17E-38 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 Gene3D G3DSA:3.30.750.80 418 518 5.4E-8 T 29-03-2018 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 Pfam PF01170 Putative RNA methylase family UPF0020 165 380 1.1E-43 T 29-03-2018 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 SMART SM00981 59 157 1.6E-22 T 29-03-2018 IPR004114 THUMP domain GO:0003723 Y880_RS13250 988736c1c4715a60d2b5be5556cab37b 725 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 504 678 6.5E-19 T 29-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 SUPERFAMILY SSF55874 293 461 1.15E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 Gene3D G3DSA:1.10.287.130 229 300 2.3E-10 T 29-03-2018 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 SMART SM00388 239 304 2.6E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 SUPERFAMILY SSF47384 222 303 1.2E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 Gene3D G3DSA:3.30.565.10 308 467 1.6E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 SMART SM00387 348 459 1.2E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 Gene3D G3DSA:1.20.5.1040 7 61 2.5E-6 T 29-03-2018 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 Gene3D G3DSA:1.20.5.1040 139 186 5.0E-4 T 29-03-2018 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 303 4.4E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 458 1.2E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 456 7.8E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 7.8E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 413 7.8E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22385 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 7.8E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 261 275 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 SUPERFAMILY SSF54373 297 479 6.08E-64 T 29-03-2018 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 Gene3D G3DSA:4.10.450.10 40 104 5.7E-24 T 29-03-2018 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 Gene3D G3DSA:3.30.560.10 105 492 9.7E-100 T 29-03-2018 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 84 107 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 TIGRFAM TIGR01810 betA: choline dehydrogenase 6 539 4.5E-281 T 29-03-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 3 556 64.894 T 29-03-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 Pfam PF05199 GMC oxidoreductase 395 529 9.5E-42 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 Pfam PF00732 GMC oxidoreductase 5 302 1.1E-95 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 SUPERFAMILY SSF51905 1 295 1.2E-88 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 SUPERFAMILY SSF51905 478 537 1.2E-88 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25505 d18d23cafeddafc8a7c881b6cbb1e8aa 561 PIRSF PIRSF000137 1 540 1.4E-135 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS08975 7108f39ef25e9ad820113787423822cf 469 Gene3D G3DSA:3.20.20.30 1 457 1.1E-113 T 29-03-2018 Y880_RS08975 7108f39ef25e9ad820113787423822cf 469 SUPERFAMILY SSF51679 1 440 1.7E-128 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS08975 7108f39ef25e9ad820113787423822cf 469 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 434 2.5E-171 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y880_RS08975 7108f39ef25e9ad820113787423822cf 469 Pfam PF00296 Luciferase-like monooxygenase 27 389 6.8E-53 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS08975 7108f39ef25e9ad820113787423822cf 469 PIRSF PIRSF000337 2 448 2.2E-146 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y880_RS12635 a049c5cbb07becd695230578af9845a9 196 Gene3D G3DSA:1.10.10.60 1 61 2.1E-16 T 29-03-2018 Y880_RS12635 a049c5cbb07becd695230578af9845a9 196 Gene3D G3DSA:1.10.357.10 62 194 5.4E-24 T 29-03-2018 Y880_RS12635 a049c5cbb07becd695230578af9845a9 196 SUPERFAMILY SSF46689 2 85 1.9E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS12635 a049c5cbb07becd695230578af9845a9 196 SUPERFAMILY SSF48498 81 196 6.81E-29 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS12635 a049c5cbb07becd695230578af9845a9 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 8.8E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 169 2.8E-53 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 SUPERFAMILY SSF52518 3 179 2.54E-48 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 Gene3D G3DSA:3.40.50.970 336 532 2.3E-42 T 29-03-2018 Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 Gene3D G3DSA:3.40.50.970 1 177 4.2E-50 T 29-03-2018 Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 189 319 8.1E-30 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 7.0E-39 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 SUPERFAMILY SSF52467 154 335 1.8E-38 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 SUPERFAMILY SSF52518 356 534 2.95E-58 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 Gene3D G3DSA:3.40.50.1220 178 335 2.5E-33 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS19170 7bb1b847a5887a7a2133656ae53634a7 547 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y880_RS20405 9f0652c37da236107089333afda01a3f 151 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 136 8.4E-45 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Y880_RS20405 9f0652c37da236107089333afda01a3f 151 SUPERFAMILY SSF89447 2 136 8.27E-44 T 29-03-2018 Y880_RS20405 9f0652c37da236107089333afda01a3f 151 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 132 5.0E-63 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Y880_RS20405 9f0652c37da236107089333afda01a3f 151 Pfam PF02381 MraZ protein, putative antitoxin-like 2 75 2.0E-16 T 29-03-2018 IPR020603 MraZ domain Y880_RS20405 9f0652c37da236107089333afda01a3f 151 Pfam PF02381 MraZ protein, putative antitoxin-like 78 132 4.4E-15 T 29-03-2018 IPR020603 MraZ domain Y880_RS20405 9f0652c37da236107089333afda01a3f 151 Gene3D G3DSA:2.10.260.10 80 129 1.1E-5 T 29-03-2018 Y880_RS20405 9f0652c37da236107089333afda01a3f 151 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 151 54.967 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Y880_RS04050 3dd4f7781d5eba7f091ae48628f81313 460 SUPERFAMILY SSF56176 5 213 9.0E-56 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS04050 3dd4f7781d5eba7f091ae48628f81313 460 Gene3D G3DSA:3.30.43.10 3 91 1.4E-15 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS04050 3dd4f7781d5eba7f091ae48628f81313 460 Gene3D G3DSA:1.10.45.10 419 458 1.4E-11 T 29-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y880_RS04050 3dd4f7781d5eba7f091ae48628f81313 460 Gene3D G3DSA:3.30.465.10 92 237 4.5E-35 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS04050 3dd4f7781d5eba7f091ae48628f81313 460 Pfam PF02913 FAD linked oxidases, C-terminal domain 219 458 2.8E-55 T 29-03-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y880_RS04050 3dd4f7781d5eba7f091ae48628f81313 460 SUPERFAMILY SSF55103 189 459 6.54E-46 T 29-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y880_RS04050 3dd4f7781d5eba7f091ae48628f81313 460 Pfam PF01565 FAD binding domain 42 175 3.1E-33 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y880_RS17490 eb781d86bd87af03d406fab5a3b3a697 233 Gene3D G3DSA:1.20.1050.10 80 231 1.0E-16 T 29-03-2018 Y880_RS17490 eb781d86bd87af03d406fab5a3b3a697 233 SUPERFAMILY SSF47616 158 229 6.55E-10 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS17490 eb781d86bd87af03d406fab5a3b3a697 233 SUPERFAMILY SSF52833 1 102 4.9E-13 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS17490 eb781d86bd87af03d406fab5a3b3a697 233 Gene3D G3DSA:3.40.30.10 1 76 1.6E-7 T 29-03-2018 Y880_RS17490 eb781d86bd87af03d406fab5a3b3a697 233 Pfam PF17172 Glutathione S-transferase N-terminal domain 18 114 1.9E-26 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS17490 eb781d86bd87af03d406fab5a3b3a697 233 Pfam PF17171 Glutathione S-transferase, C-terminal domain 164 226 1.9E-16 T 29-03-2018 IPR033468 Metaxin, glutathione S-transferase domain Y880_RS25260 99ef45c503c7e262d51c9a9948064ba3 129 SUPERFAMILY SSF46626 54 124 2.4E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25260 99ef45c503c7e262d51c9a9948064ba3 129 Gene3D G3DSA:1.10.760.10 53 128 4.9E-10 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25260 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 59 70 4.3E-7 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25260 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 113 124 4.3E-7 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25260 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 70 80 4.3E-7 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25260 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 98 110 4.3E-7 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS25260 99ef45c503c7e262d51c9a9948064ba3 129 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 51 123 4.5E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 248 380 3.1E-20 T 29-03-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 Gene3D G3DSA:1.20.140.10 231 404 1.0E-25 T 29-03-2018 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 SUPERFAMILY SSF56645 27 229 2.75E-48 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 27 128 1.6E-10 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 PIRSF PIRSF016578 7 396 3.2E-30 T 29-03-2018 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 Gene3D G3DSA:1.10.540.10 6 130 6.0E-17 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 Gene3D G3DSA:2.40.110.10 131 230 1.3E-16 T 29-03-2018 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 SUPERFAMILY SSF47203 233 399 1.93E-26 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS09080 eebb2ba6588c893fb7582e64401fdfbf 405 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 15 404 3.2E-197 T 29-03-2018 IPR023922 Sulphate-starvation-induced SfnB Y880_RS00595 550ff6126a6233854308595a1b00b220 375 Gene3D G3DSA:1.10.580.10 302 355 1.2E-9 T 29-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain Y880_RS00595 550ff6126a6233854308595a1b00b220 375 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 5.5E-155 T 29-03-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 SUPERFAMILY SSF48256 10 375 4.06E-128 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 1.0E-119 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 Gene3D G3DSA:1.10.580.10 16 263 1.9E-81 T 29-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain Y880_RS00595 550ff6126a6233854308595a1b00b220 375 PIRSF PIRSF001369 3 375 2.1E-119 T 29-03-2018 IPR024176 Citrate synthase, bacterial-type Y880_RS00595 550ff6126a6233854308595a1b00b220 375 ProSitePatterns PS00480 Citrate synthase signature. 258 270 - T 29-03-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 PRINTS PR00143 Citrate synthase signature 328 342 7.5E-41 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 PRINTS PR00143 Citrate synthase signature 198 226 7.5E-41 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 PRINTS PR00143 Citrate synthase signature 251 271 7.5E-41 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 PRINTS PR00143 Citrate synthase signature 176 191 7.5E-41 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 PRINTS PR00143 Citrate synthase signature 308 324 7.5E-41 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS00595 550ff6126a6233854308595a1b00b220 375 PRINTS PR00143 Citrate synthase signature 126 139 7.5E-41 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Hamap MF_01113 DNA polymerase IV [dinB]. 1 348 38.056 T 29-03-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Pfam PF11799 impB/mucB/samB family C-terminal domain 234 338 1.8E-4 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 SUPERFAMILY SSF56672 2 234 1.42E-93 T 29-03-2018 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Pfam PF11798 IMS family HHH motif 169 197 8.7E-6 T 29-03-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Gene3D G3DSA:3.30.70.270 41 112 4.2E-27 T 29-03-2018 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Gene3D G3DSA:3.30.70.270 113 170 5.9E-21 T 29-03-2018 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Gene3D G3DSA:1.10.150.20 171 242 1.2E-23 T 29-03-2018 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Gene3D G3DSA:3.30.1490.100 243 349 2.7E-18 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 SUPERFAMILY SSF100879 242 348 1.96E-23 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y880_RS01410 b1a8f77647076c1b4779c115304b959c 349 Pfam PF00817 impB/mucB/samB family 7 154 1.4E-52 T 29-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y880_RS28795 225c22e06b0519d5e10a78f392d4b3d8 442 Gene3D G3DSA:2.40.50.100 209 405 5.9E-7 T 29-03-2018 Y880_RS28795 225c22e06b0519d5e10a78f392d4b3d8 442 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 117 337 5.6E-16 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS28795 225c22e06b0519d5e10a78f392d4b3d8 442 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 97 419 7.6E-77 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS28795 225c22e06b0519d5e10a78f392d4b3d8 442 SUPERFAMILY SSF111369 108 344 5.75E-94 T 29-03-2018 Y880_RS28795 225c22e06b0519d5e10a78f392d4b3d8 442 Gene3D G3DSA:2.40.50.100 121 208 2.0E-15 T 29-03-2018 Y880_RS28795 225c22e06b0519d5e10a78f392d4b3d8 442 Pfam PF00529 HlyD membrane-fusion protein of T1SS 119 405 6.0E-9 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS02985 7cdc8c3ff42ceb560ff3bab2e7e0f2bb 420 SUPERFAMILY SSF52777 50 207 6.67E-7 T 29-03-2018 Y880_RS02985 7cdc8c3ff42ceb560ff3bab2e7e0f2bb 420 Gene3D G3DSA:3.30.559.10 15 241 1.6E-4 T 29-03-2018 Y880_RS08860 5e458073009b03d6dc1007cc0c650989 339 Gene3D G3DSA:3.60.130.10 22 333 1.4E-66 T 29-03-2018 Y880_RS08860 5e458073009b03d6dc1007cc0c650989 339 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 39 330 1.2E-49 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS08860 5e458073009b03d6dc1007cc0c650989 339 SUPERFAMILY SSF51197 27 332 5.49E-84 T 29-03-2018 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 SMART SM00382 159 303 1.1E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 422 442 5.2E-5 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 405 422 5.2E-5 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 SUPERFAMILY SSF46689 352 441 1.13E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 Gene3D G3DSA:3.40.50.300 133 310 1.0E-25 T 29-03-2018 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 Gene3D G3DSA:1.10.8.60 312 382 3.2E-22 T 29-03-2018 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 Gene3D G3DSA:1.10.10.60 395 441 1.1E-10 T 29-03-2018 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 SUPERFAMILY SSF52540 139 380 6.02E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 Pfam PF00158 Sigma-54 interaction domain 140 305 2.2E-71 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS06880 b805f8c74fb6d073bf458ca990646b7a 442 Pfam PF02954 Bacterial regulatory protein, Fis family 403 435 2.0E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS21105 67787af6d13d2c894dc17d2807e44a7d 1163 SUPERFAMILY SSF50998 671 950 3.53E-12 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS21105 67787af6d13d2c894dc17d2807e44a7d 1163 Gene3D G3DSA:3.40.50.410 42 497 3.7E-33 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS21105 67787af6d13d2c894dc17d2807e44a7d 1163 Pfam PF05567 Neisseria PilC beta-propeller domain 637 1003 1.5E-223 T 29-03-2018 IPR008707 PilC beta-propeller domain Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 Gene3D G3DSA:3.30.565.10 392 580 1.9E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 Pfam PF00512 His Kinase A (phospho-acceptor) domain 362 430 9.4E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 SMART SM00387 472 581 1.0E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 560 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 578 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 525 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 539 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 SUPERFAMILY SSF103190 108 193 1.16E-13 T 29-03-2018 IPR029151 Periplasmic sensor domain-like Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 SMART SM00388 362 430 3.2E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 579 1.8E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 PIRSF PIRSF036431 1 588 1.2E-192 T 29-03-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 SUPERFAMILY SSF55874 433 579 9.3E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 SUPERFAMILY SSF47384 358 431 1.96E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 Gene3D G3DSA:3.30.450.20 186 391 4.5E-5 T 29-03-2018 Y880_RS26245 65d28635d04ae756420d229c8c8fc139 588 Gene3D G3DSA:3.30.450.20 59 181 1.5E-20 T 29-03-2018 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 29-03-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 SUPERFAMILY SSF143034 2 61 6.67E-20 T 29-03-2018 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 17.841 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 4.6E-20 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.6E-20 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 4.6E-20 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 61 1.0E-23 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y880_RS11165 9b683c4717ddf2f13ced5e382f6c7249 64 Pfam PF01632 Ribosomal protein L35 2 60 4.0E-23 T 29-03-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS28175 26ac05d687bdbe1611bee3516669587c 339 SUPERFAMILY SSF53474 79 322 1.9E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS28175 26ac05d687bdbe1611bee3516669587c 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 171 184 1.3E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS28175 26ac05d687bdbe1611bee3516669587c 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 279 293 1.3E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS28175 26ac05d687bdbe1611bee3516669587c 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 137 1.3E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS28175 26ac05d687bdbe1611bee3516669587c 339 Pfam PF12146 Serine aminopeptidase, S33 93 323 2.7E-30 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 Y880_RS28175 26ac05d687bdbe1611bee3516669587c 339 Gene3D G3DSA:3.40.50.1820 70 338 6.8E-27 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS20115 7a47e2274047e77e782c39d110faf632 200 Pfam PF01810 LysE type translocator 15 198 4.8E-42 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 SUPERFAMILY SSF47384 226 307 1.51E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 SUPERFAMILY SSF55874 314 460 1.92E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 SUPERFAMILY SSF158472 191 239 3.92E-5 T 29-03-2018 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 SMART SM00304 189 242 7.6E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 5.0E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 5.0E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 Gene3D G3DSA:1.10.287.130 233 305 2.6E-12 T 29-03-2018 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 SMART SM00388 243 309 6.2E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 448 1.4E-11 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 Pfam PF00672 HAMP domain 189 238 5.3E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 SMART SM00387 352 461 8.0E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 307 2.3E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 460 1.8E-175 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y880_RS22945 16633473dc754856be518550f8f2a3c8 463 Gene3D G3DSA:3.30.565.10 313 463 2.7E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 SUPERFAMILY SSF69349 442 493 1.41E-9 T 29-03-2018 Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 SUPERFAMILY SSF69279 9 182 1.62E-47 T 29-03-2018 Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 Gene3D G3DSA:2.40.50.230 370 452 1.3E-35 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 Gene3D G3DSA:3.55.50.10 96 185 5.7E-20 T 29-03-2018 Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 475 581 4.3E-34 T 29-03-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 493 2.0E-160 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 SUPERFAMILY SSF69279 197 365 1.7E-31 T 29-03-2018 Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 615 759 5.2E-49 T 29-03-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 Pfam PF05954 Phage late control gene D protein (GPD) 27 327 7.0E-75 T 29-03-2018 Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 SUPERFAMILY SSF69255 364 451 1.02E-33 T 29-03-2018 Y880_RS04530 2b7603cef4a5131c60db867a953bc498 842 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 19 502 1.8E-120 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS06430 3899909de2275935d60fc66c7f8497a0 307 PIRSF PIRSF016660 1 305 1.5E-123 T 29-03-2018 IPR008526 Inner membrane protein YedI Y880_RS06430 3899909de2275935d60fc66c7f8497a0 307 Gene3D G3DSA:1.20.5.510 272 296 3.7E-4 T 29-03-2018 Y880_RS06430 3899909de2275935d60fc66c7f8497a0 307 Pfam PF05661 Protein of unknown function (DUF808) 4 291 1.8E-118 T 29-03-2018 IPR008526 Inner membrane protein YedI Y880_RS24325 05c3598b4f44b6a8097df4e5046ca6f9 360 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 11 124 5.8E-22 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Y880_RS24325 05c3598b4f44b6a8097df4e5046ca6f9 360 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 145 219 6.4E-8 T 29-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 Y880_RS24325 05c3598b4f44b6a8097df4e5046ca6f9 360 SUPERFAMILY SSF51735 10 203 1.1E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24325 05c3598b4f44b6a8097df4e5046ca6f9 360 Gene3D G3DSA:3.40.50.720 6 142 2.5E-36 T 29-03-2018 Y880_RS24325 05c3598b4f44b6a8097df4e5046ca6f9 360 Gene3D G3DSA:3.30.360.10 143 358 5.5E-37 T 29-03-2018 Y880_RS01790 381a9ceeace40cd237e750b1cc7bbc64 332 Pfam PF03466 LysR substrate binding domain 139 292 6.2E-14 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS01790 381a9ceeace40cd237e750b1cc7bbc64 332 SUPERFAMILY SSF46785 3 78 1.2E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01790 381a9ceeace40cd237e750b1cc7bbc64 332 Gene3D G3DSA:3.40.190.10 166 260 1.4E-9 T 29-03-2018 Y880_RS01790 381a9ceeace40cd237e750b1cc7bbc64 332 Gene3D G3DSA:1.10.10.10 3 81 1.3E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01790 381a9ceeace40cd237e750b1cc7bbc64 332 SUPERFAMILY SSF53850 140 296 1.16E-18 T 29-03-2018 Y880_RS01790 381a9ceeace40cd237e750b1cc7bbc64 332 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 6.3E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 Gene3D G3DSA:3.55.50.10 95 187 2.2E-24 T 29-03-2018 Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 SUPERFAMILY SSF69349 441 623 9.42E-33 T 29-03-2018 Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 Pfam PF05954 Phage late control gene D protein (GPD) 29 321 5.0E-70 T 29-03-2018 Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 SUPERFAMILY SSF69279 10 183 4.25E-51 T 29-03-2018 Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 503 1.3E-110 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 SUPERFAMILY SSF69279 184 364 1.38E-41 T 29-03-2018 Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 Gene3D G3DSA:2.40.50.230 369 451 6.3E-35 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 SUPERFAMILY SSF69255 366 451 9.94E-31 T 29-03-2018 Y880_RS03925 8751215dee673fc5db76dd9598d230d3 691 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 10 521 5.3E-184 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS02695 d60033a32db4f36fd8db9eff649f6717 869 Gene3D G3DSA:3.90.550.10 392 671 2.7E-46 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02695 d60033a32db4f36fd8db9eff649f6717 869 Pfam PF13641 Glycosyltransferase like family 2 421 649 2.2E-31 T 29-03-2018 Y880_RS02695 d60033a32db4f36fd8db9eff649f6717 869 SUPERFAMILY SSF53448 405 662 2.1E-50 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02695 d60033a32db4f36fd8db9eff649f6717 869 Gene3D G3DSA:3.20.20.80 40 304 2.0E-38 T 29-03-2018 Y880_RS02695 d60033a32db4f36fd8db9eff649f6717 869 ProSitePatterns PS00587 Glycosyl hydrolases family 17 signature. 223 236 - T 29-03-2018 IPR000490 Glycoside hydrolase family 17 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.39 Y880_RS02695 d60033a32db4f36fd8db9eff649f6717 869 SUPERFAMILY SSF51445 39 302 1.38E-54 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 Gene3D G3DSA:3.30.365.10 261 361 1.6E-12 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 Gene3D G3DSA:3.30.365.10 362 521 5.6E-28 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 Gene3D G3DSA:3.30.365.10 540 736 5.7E-27 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 690 881 1.6E-16 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 265 602 2.6E-52 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 SUPERFAMILY SSF54665 52 174 4.53E-12 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 Gene3D G3DSA:3.90.1170.50 33 175 2.9E-6 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 SUPERFAMILY SSF56003 797 942 2.88E-122 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 SUPERFAMILY SSF56003 638 742 2.88E-122 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 SUPERFAMILY SSF56003 264 610 2.88E-122 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS21460 d68875042d1252a93bf4bf12143d795d 943 Gene3D G3DSA:3.30.365.10 766 943 1.8E-37 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS18025 50195376e18bda26cd7b4db5fb40742f 144 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 127 6.8E-6 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS18025 50195376e18bda26cd7b4db5fb40742f 144 Gene3D G3DSA:3.10.180.10 1 144 5.8E-18 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS18025 50195376e18bda26cd7b4db5fb40742f 144 SUPERFAMILY SSF54593 8 133 5.78E-22 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS10545 f94ed94035e97b67731049f7ef0eab6a 375 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 12 363 5.4E-139 T 29-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 Y880_RS10545 f94ed94035e97b67731049f7ef0eab6a 375 Gene3D G3DSA:3.40.50.620 3 216 2.8E-65 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS10545 f94ed94035e97b67731049f7ef0eab6a 375 Pfam PF03054 tRNA methyl transferase 12 363 1.7E-136 T 29-03-2018 Y880_RS10545 f94ed94035e97b67731049f7ef0eab6a 375 Gene3D G3DSA:2.30.30.280 217 284 1.9E-26 T 29-03-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 Y880_RS10545 f94ed94035e97b67731049f7ef0eab6a 375 SUPERFAMILY SSF52402 11 248 9.7E-57 T 29-03-2018 Y880_RS10545 f94ed94035e97b67731049f7ef0eab6a 375 Gene3D G3DSA:2.40.30.10 286 370 1.3E-26 T 29-03-2018 Y880_RS10545 f94ed94035e97b67731049f7ef0eab6a 375 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 11 364 40.523 T 29-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 Y880_RS14580 5d2baa36f1636a7e66e30056e0d47f5e 277 Gene3D G3DSA:2.40.50.100 152 245 1.5E-4 T 29-03-2018 Y880_RS14580 5d2baa36f1636a7e66e30056e0d47f5e 277 Pfam PF13533 Biotin-lipoyl like 43 88 9.1E-16 T 29-03-2018 Y880_RS14580 5d2baa36f1636a7e66e30056e0d47f5e 277 Gene3D G3DSA:2.40.50.100 43 151 1.4E-11 T 29-03-2018 Y880_RS14580 5d2baa36f1636a7e66e30056e0d47f5e 277 Pfam PF13437 HlyD family secretion protein 153 236 2.0E-12 T 29-03-2018 Y880_RS14580 5d2baa36f1636a7e66e30056e0d47f5e 277 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 235 2.3E-31 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS14580 5d2baa36f1636a7e66e30056e0d47f5e 277 SUPERFAMILY SSF111369 42 223 1.23E-18 T 29-03-2018 Y880_RS17575 a9c06c2a6681eeb061e036b42421fdcb 246 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 13 164 3.6E-35 T 29-03-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 Y880_RS17575 a9c06c2a6681eeb061e036b42421fdcb 246 Gene3D G3DSA:1.10.3480.10 30 201 9.7E-28 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone Y880_RS17575 a9c06c2a6681eeb061e036b42421fdcb 246 Pfam PF02613 Nitrate reductase delta subunit 39 161 3.6E-11 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone Y880_RS17575 a9c06c2a6681eeb061e036b42421fdcb 246 SUPERFAMILY SSF89155 6 166 6.41E-30 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone Y880_RS06240 7d6bf02f6c9bcb4b28d9fda9e1089d72 562 Gene3D G3DSA:1.20.120.160 429 561 5.8E-7 T 29-03-2018 Y880_RS06240 7d6bf02f6c9bcb4b28d9fda9e1089d72 562 Gene3D G3DSA:1.20.120.160 5 134 2.5E-6 T 29-03-2018 Y880_RS06240 7d6bf02f6c9bcb4b28d9fda9e1089d72 562 SUPERFAMILY SSF47226 8 125 1.0E-6 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS06240 7d6bf02f6c9bcb4b28d9fda9e1089d72 562 Gene3D G3DSA:1.20.120.160 305 408 0.082 T 29-03-2018 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 Pfam PF00072 Response regulator receiver domain 9 118 1.5E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 199 3.7E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 SMART SM00448 7 118 3.5E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 Gene3D G3DSA:1.10.10.10 133 205 2.5E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 SUPERFAMILY SSF46894 132 206 2.82E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 SMART SM00421 142 199 5.5E-16 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 Gene3D G3DSA:3.40.50.2300 2 132 2.6E-29 T 29-03-2018 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 SUPERFAMILY SSF52172 9 156 1.1E-33 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 4.2E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 4.2E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19255 5e33996ac88f2f3c83f954a2dab3cb43 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 4.2E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 Gene3D G3DSA:3.90.1150.10 237 404 4.9E-51 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 Gene3D G3DSA:3.40.640.10 1 236 1.6E-50 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 2.6E-234 T 29-03-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 PIRSF PIRSF005572 2 384 3.3E-131 T 29-03-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 Pfam PF00266 Aminotransferase class-V 5 368 4.8E-84 T 29-03-2018 IPR000192 Aminotransferase class V domain Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 53.608 T 29-03-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Y880_RS17275 59782e5ebe6157e88a79deff7ede8e8a 404 SUPERFAMILY SSF53383 5 391 6.12E-111 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 Gene3D G3DSA:3.40.50.1220 185 330 6.7E-36 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 318 2.9E-29 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 1.7E-36 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 SUPERFAMILY SSF52467 181 346 3.45E-42 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 SUPERFAMILY SSF52518 357 558 7.79E-56 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 Gene3D G3DSA:3.40.50.970 1 184 3.0E-43 T 29-03-2018 Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 SUPERFAMILY SSF52518 4 182 1.1E-44 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 Gene3D G3DSA:3.40.50.970 331 535 8.8E-36 T 29-03-2018 Y880_RS25100 9f4e14a75d0c812ce67b652ff1da25c3 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 2.4E-41 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y880_RS24260 9c8b9575cbb7925b7c3f906d50873e52 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 250 3.4E-18 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS24260 9c8b9575cbb7925b7c3f906d50873e52 250 SUPERFAMILY SSF53850 30 250 7.29E-35 T 29-03-2018 Y880_RS24260 9c8b9575cbb7925b7c3f906d50873e52 250 Gene3D G3DSA:3.40.190.10 131 207 2.6E-8 T 29-03-2018 Y880_RS24260 9c8b9575cbb7925b7c3f906d50873e52 250 Gene3D G3DSA:3.40.190.10 22 130 1.7E-10 T 29-03-2018 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 ProSitePatterns PS00543 HlyD family secretion proteins signature. 396 418 - T 29-03-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 Pfam PF00529 HlyD membrane-fusion protein of T1SS 23 388 2.0E-20 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 Gene3D G3DSA:1.20.1600.10 123 387 1.7E-15 T 29-03-2018 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 12 431 9.4E-122 T 29-03-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 296 317 7.0E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 353 376 7.0E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 63 83 7.0E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 329 353 7.0E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 21 44 7.0E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 396 411 7.0E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 411 431 7.0E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 SUPERFAMILY SSF111369 54 111 3.01E-6 T 29-03-2018 Y880_RS03125 937f34d461ca0c798ff53cb25ac94da1 432 Gene3D G3DSA:2.40.50.100 51 122 5.5E-13 T 29-03-2018 Y880_RS17085 bc97d9ff6d041f596b3e6133b77d6ea9 459 Gene3D G3DSA:2.40.50.140 11 116 2.1E-10 T 29-03-2018 Y880_RS17085 bc97d9ff6d041f596b3e6133b77d6ea9 459 Gene3D G3DSA:3.40.50.1970 117 252 0.001 T 29-03-2018 Y880_RS17085 bc97d9ff6d041f596b3e6133b77d6ea9 459 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 360 1.7E-131 T 29-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS17085 bc97d9ff6d041f596b3e6133b77d6ea9 459 Pfam PF02601 Exonuclease VII, large subunit 132 443 7.0E-100 T 29-03-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Y880_RS17085 bc97d9ff6d041f596b3e6133b77d6ea9 459 Gene3D G3DSA:3.90.20.10 253 399 5.3E-4 T 29-03-2018 Y880_RS17085 bc97d9ff6d041f596b3e6133b77d6ea9 459 Pfam PF13742 OB-fold nucleic acid binding domain 16 108 2.7E-28 T 29-03-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 Y880_RS17085 bc97d9ff6d041f596b3e6133b77d6ea9 459 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 446 31.882 T 29-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS00315 16acf55a51d4dda6681518aad6ffbeab 213 Pfam PF13460 NAD(P)H-binding 7 198 3.7E-34 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS00315 16acf55a51d4dda6681518aad6ffbeab 213 Gene3D G3DSA:3.40.50.720 1 213 1.4E-32 T 29-03-2018 Y880_RS00315 16acf55a51d4dda6681518aad6ffbeab 213 SUPERFAMILY SSF51735 1 211 2.96E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS12700 48558d7e561ab2b0b925e45d68b0a6ee 364 Pfam PF00793 DAHP synthetase I family 60 353 1.4E-78 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y880_RS12700 48558d7e561ab2b0b925e45d68b0a6ee 364 Gene3D G3DSA:3.20.20.70 26 364 5.9E-113 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS12700 48558d7e561ab2b0b925e45d68b0a6ee 364 PIRSF PIRSF001361 14 364 2.4E-145 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y880_RS12700 48558d7e561ab2b0b925e45d68b0a6ee 364 SUPERFAMILY SSF51569 28 361 4.81E-118 T 29-03-2018 Y880_RS12700 48558d7e561ab2b0b925e45d68b0a6ee 364 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 27 364 5.7E-130 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y880_RS16455 db8d369399cfd3e7720cf0db4e010f9d 581 Pfam PF00999 Sodium/hydrogen exchanger family 35 447 3.1E-84 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y880_RS16455 db8d369399cfd3e7720cf0db4e010f9d 581 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 35 573 3.3E-127 T 29-03-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 28 41 4.9E-29 T 29-03-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 92 102 4.9E-29 T 29-03-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 66 79 4.9E-29 T 29-03-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 81 91 4.9E-29 T 29-03-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 43 56 4.9E-29 T 29-03-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 26 100 1.5E-6 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 SUPERFAMILY SSF46626 25 103 2.22E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29280 0c22eb0a87ea5a6e9f8fc615a0473325 104 Gene3D G3DSA:1.10.760.10 23 104 5.7E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 SUPERFAMILY SSF53187 300 382 1.07E-64 T 29-03-2018 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 SUPERFAMILY SSF53187 9 186 1.07E-64 T 29-03-2018 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 Pfam PF01546 Peptidase family M20/M25/M40 69 379 4.4E-41 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 9 383 51.892 T 29-03-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 Gene3D G3DSA:3.40.630.10 7 288 7.6E-61 T 29-03-2018 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 12 381 3.4E-162 T 29-03-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 105 143 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 SUPERFAMILY SSF55031 187 296 4.04E-30 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS02690 837acdca475ff46da2d663cc72882d7b 383 Pfam PF07687 Peptidase dimerisation domain 183 289 1.3E-27 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS04205 fc545aa330fc1afe2e79346775eb5e5e 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 2.9E-29 T 29-03-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 Y880_RS04205 fc545aa330fc1afe2e79346775eb5e5e 89 Pfam PF01313 Bacterial export proteins, family 3 6 78 3.5E-29 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS04205 fc545aa330fc1afe2e79346775eb5e5e 89 PIRSF PIRSF004669 1 89 1.6E-30 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS04205 fc545aa330fc1afe2e79346775eb5e5e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 7.9E-17 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS04205 fc545aa330fc1afe2e79346775eb5e5e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 7.9E-17 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS04205 fc545aa330fc1afe2e79346775eb5e5e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 7.9E-17 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS05405 04655b65839c8ca5313a53bbe2990f02 1175 Pfam PF06744 Type VI secretion protein IcmF C-terminal 923 1123 6.5E-57 T 29-03-2018 IPR010623 Type VI secretion system IcmF, C-terminal Y880_RS05405 04655b65839c8ca5313a53bbe2990f02 1175 Pfam PF14331 ImcF-related N-terminal domain 198 452 9.5E-78 T 29-03-2018 IPR025743 ImcF-related, N-terminal domain Y880_RS05405 04655b65839c8ca5313a53bbe2990f02 1175 SUPERFAMILY SSF52540 117 332 1.17E-9 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05405 04655b65839c8ca5313a53bbe2990f02 1175 Gene3D G3DSA:3.40.50.300 87 591 1.1E-8 T 29-03-2018 Y880_RS05405 04655b65839c8ca5313a53bbe2990f02 1175 Pfam PF06761 Intracellular multiplication and human macrophage-killing 518 792 1.1E-69 T 29-03-2018 IPR009612 ImcF-related Y880_RS05405 04655b65839c8ca5313a53bbe2990f02 1175 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 18 1172 0.0 T 29-03-2018 IPR017731 Type VI secretion system, IcmF Y880_RS27850 92999107fdbb80ce7ad72a39d80da62a 144 SMART SM00116 15 62 2.3E-6 T 29-03-2018 IPR000644 CBS domain Y880_RS27850 92999107fdbb80ce7ad72a39d80da62a 144 SMART SM00116 80 127 2.2E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS27850 92999107fdbb80ce7ad72a39d80da62a 144 Gene3D G3DSA:3.10.580.10 4 143 2.3E-28 T 29-03-2018 Y880_RS27850 92999107fdbb80ce7ad72a39d80da62a 144 Pfam PF00571 CBS domain 74 125 1.3E-11 T 29-03-2018 IPR000644 CBS domain Y880_RS27850 92999107fdbb80ce7ad72a39d80da62a 144 Pfam PF00571 CBS domain 14 61 6.9E-10 T 29-03-2018 IPR000644 CBS domain Y880_RS27850 92999107fdbb80ce7ad72a39d80da62a 144 SUPERFAMILY SSF54631 10 142 1.64E-32 T 29-03-2018 Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 Gene3D G3DSA:3.40.50.970 1 199 1.7E-41 T 29-03-2018 Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 Gene3D G3DSA:3.40.50.1220 200 347 1.0E-25 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 SUPERFAMILY SSF52518 362 535 2.5E-38 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 326 2.3E-15 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 423 442 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 Gene3D G3DSA:3.40.50.970 348 537 1.7E-29 T 29-03-2018 Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 SUPERFAMILY SSF52467 162 352 2.77E-29 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 SUPERFAMILY SSF52518 6 189 1.65E-41 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 533 2.6E-29 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y880_RS15645 0976cc2e22fee2870c5228e3f51db536 560 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 177 6.2E-44 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y880_RS22995 60eb0c6e4e1fc42f9ed9ac4a0210b912 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 168 2.9E-15 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS22995 60eb0c6e4e1fc42f9ed9ac4a0210b912 178 SUPERFAMILY SSF88946 8 108 6.67E-11 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS22995 60eb0c6e4e1fc42f9ed9ac4a0210b912 178 Pfam PF08281 Sigma-70, region 4 119 170 4.4E-13 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS22995 60eb0c6e4e1fc42f9ed9ac4a0210b912 178 Pfam PF04542 Sigma-70 region 2 18 88 4.8E-6 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS22995 60eb0c6e4e1fc42f9ed9ac4a0210b912 178 Gene3D G3DSA:1.10.10.10 85 176 3.0E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22995 60eb0c6e4e1fc42f9ed9ac4a0210b912 178 Gene3D G3DSA:1.10.1740.10 2 84 2.8E-12 T 29-03-2018 Y880_RS22995 60eb0c6e4e1fc42f9ed9ac4a0210b912 178 SUPERFAMILY SSF88659 114 175 3.05E-12 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 Gene3D G3DSA:3.90.190.20 310 446 1.5E-39 T 29-03-2018 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 307 380 1.3E-7 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 Gene3D G3DSA:3.40.50.720 10 98 5.2E-12 T 29-03-2018 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 Pfam PF08245 Mur ligase middle domain 114 285 5.3E-26 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 SUPERFAMILY SSF51984 11 97 5.62E-15 T 29-03-2018 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 Gene3D G3DSA:3.40.1190.10 99 305 8.0E-56 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 SUPERFAMILY SSF53623 100 303 2.62E-52 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 445 9.8E-118 T 29-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 8 447 34.528 T 29-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20370 486b2a5939f7e849db1b825e4a12af5a 448 SUPERFAMILY SSF53244 305 447 7.1E-47 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS19615 82b085c3289986888f34905f67156a75 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 27.953 T 29-03-2018 IPR022973 Ribosomal protein L10 Y880_RS19615 82b085c3289986888f34905f67156a75 166 SUPERFAMILY SSF160369 4 160 2.35E-49 T 29-03-2018 Y880_RS19615 82b085c3289986888f34905f67156a75 166 Pfam PF00466 Ribosomal protein L10 6 101 2.6E-26 T 29-03-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 Y880_RS19615 82b085c3289986888f34905f67156a75 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 29-03-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19615 82b085c3289986888f34905f67156a75 166 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 75 154 1.0E-5 T 29-03-2018 Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SUPERFAMILY SSF82697 1 150 1.99E-47 T 29-03-2018 Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SMART SM01211 1042 1297 6.4E-155 T 29-03-2018 Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1297 0.0 T 29-03-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SUPERFAMILY SSF109736 153 218 1.96E-21 T 29-03-2018 Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SUPERFAMILY SSF56042 430 612 8.67E-54 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SUPERFAMILY SSF52317 1039 1297 5.21E-96 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SUPERFAMILY SSF55326 622 814 2.33E-67 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Pfam PF02769 AIR synthase related protein, C-terminal domain 836 966 2.3E-15 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Pfam PF02769 AIR synthase related protein, C-terminal domain 430 586 6.0E-31 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Gene3D G3DSA:3.40.50.880 1041 1296 1.1E-29 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1298 21.373 T 29-03-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Gene3D G3DSA:3.30.1330.10 613 811 1.4E-23 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Gene3D G3DSA:3.30.1330.10 217 423 3.4E-48 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Gene3D G3DSA:3.30.1330.10 181 216 0.0012 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1042 1297 7.2E-106 T 29-03-2018 Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SUPERFAMILY SSF56042 823 1036 5.08E-56 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Gene3D G3DSA:3.90.650.10 820 997 1.3E-35 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 Gene3D G3DSA:3.90.650.10 424 612 4.7E-32 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS16985 9797e09e84561f8a177eafed1700a75a 1298 SUPERFAMILY SSF55326 219 426 2.37E-63 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 SUPERFAMILY SSF52540 2 191 4.53E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 SUPERFAMILY SSF46785 578 626 5.44E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 SUPERFAMILY SSF50465 269 365 6.83E-19 T 29-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Gene3D G3DSA:2.40.30.10 269 349 5.7E-17 T 29-03-2018 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Gene3D G3DSA:2.40.30.10 175 262 1.6E-18 T 29-03-2018 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Gene3D G3DSA:1.10.10.10 568 626 8.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 159 1.3E-12 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Pfam PF09106 Elongation factor SelB, winged helix 442 497 3.1E-15 T 29-03-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 627 7.1E-146 T 29-03-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 SUPERFAMILY SSF50447 172 261 1.04E-17 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 SUPERFAMILY SSF46785 504 566 5.27E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 SUPERFAMILY SSF46785 432 502 6.26E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Gene3D G3DSA:1.10.10.10 506 565 3.8E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Pfam PF00009 Elongation factor Tu GTP binding domain 2 161 3.1E-31 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Pfam PF09107 Elongation factor SelB, winged helix 583 625 2.0E-18 T 29-03-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Gene3D G3DSA:1.10.10.10 433 497 8.5E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 Gene3D G3DSA:3.40.50.300 1 174 7.0E-34 T 29-03-2018 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.0E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.0E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.0E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS22540 e7b245cbbd567c87eb04461cc4064bf9 641 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.0E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 Gene3D G3DSA:2.60.40.10 339 444 4.8E-13 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 SUPERFAMILY SSF51055 438 481 5.1E-14 T 29-03-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 Gene3D G3DSA:2.10.10.20 445 481 3.5E-10 T 29-03-2018 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 SMART SM00060 343 417 3.6E-6 T 29-03-2018 IPR003961 Fibronectin type III GO:0005515 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 SUPERFAMILY SSF51445 25 321 7.0E-47 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 SMART SM00495 436 482 2.7E-4 T 29-03-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 Pfam PF00704 Glycosyl hydrolases family 18 29 311 2.7E-27 T 29-03-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 Gene3D G3DSA:3.20.20.80 22 337 2.2E-41 T 29-03-2018 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 ProSitePatterns PS01095 Chitinases family 18 active site. 135 143 - T 29-03-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Y880_RS08845 6665d5e885674ab10eaee5752476e78c 483 SUPERFAMILY SSF49265 342 427 4.43E-11 T 29-03-2018 IPR003961 Fibronectin type III GO:0005515 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 Gene3D G3DSA:3.30.420.10 153 349 4.7E-42 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 SUPERFAMILY SSF53098 5 391 1.39E-94 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 SMART SM00486 150 557 6.8E-63 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 ProSitePatterns PS00116 DNA polymerase family B signature. 545 553 - T 29-03-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 Pfam PF00136 DNA polymerase family B 379 740 8.9E-39 T 29-03-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 543 551 7.1E-10 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 491 503 7.1E-10 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 417 430 7.1E-10 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 SUPERFAMILY SSF56672 387 781 3.89E-113 T 29-03-2018 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 Gene3D G3DSA:3.90.1600.10 391 603 5.6E-52 T 29-03-2018 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06580 0aedc1a3f4ade6a761ff6df9f169383d 787 Pfam PF03104 DNA polymerase family B, exonuclease domain 73 298 2.4E-11 T 29-03-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 Gene3D G3DSA:3.30.300.30 439 545 3.4E-23 T 29-03-2018 Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 ProSitePatterns PS00455 Putative AMP-binding domain signature. 197 208 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 Pfam PF00501 AMP-binding enzyme 41 445 7.2E-86 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 Gene3D G3DSA:3.40.50.980 201 355 2.6E-36 T 29-03-2018 Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 SUPERFAMILY SSF56801 21 541 1.06E-133 T 29-03-2018 Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 Pfam PF13193 AMP-binding enzyme C-terminal domain 454 529 3.7E-15 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 Gene3D G3DSA:2.30.38.10 356 438 1.8E-23 T 29-03-2018 Y880_RS19400 e281c98eeb88b8740cae63a6fbecda49 547 Gene3D G3DSA:3.40.50.980 33 200 4.6E-30 T 29-03-2018 Y880_RS03285 e4e6b1c1e539d9713b93a0dd6ab5ae10 331 Gene3D G3DSA:3.40.640.10 48 221 5.3E-26 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS03285 e4e6b1c1e539d9713b93a0dd6ab5ae10 331 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 189 202 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y880_RS03285 e4e6b1c1e539d9713b93a0dd6ab5ae10 331 Pfam PF00155 Aminotransferase class I and II 54 308 1.1E-30 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS03285 e4e6b1c1e539d9713b93a0dd6ab5ae10 331 Gene3D G3DSA:3.90.1150.10 222 320 2.9E-10 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS03285 e4e6b1c1e539d9713b93a0dd6ab5ae10 331 SUPERFAMILY SSF53383 12 313 1.92E-56 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS03285 e4e6b1c1e539d9713b93a0dd6ab5ae10 331 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 4 322 5.6E-111 T 29-03-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 Gene3D G3DSA:3.40.50.1000 2 218 3.7E-27 T 29-03-2018 IPR023214 HAD-like domain Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 9.1E-9 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 9.1E-9 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 9.1E-9 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 9.1E-9 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 180 193 9.1E-9 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 SUPERFAMILY SSF56784 5 203 1.09E-42 T 29-03-2018 IPR023214 HAD-like domain Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 187 2.2E-13 T 29-03-2018 IPR023214 HAD-like domain Y880_RS24475 1b462a0ffcee93ecd6f859c9f41fcea5 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 91 186 1.7E-13 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 SMART SM00100 11 127 2.8E-5 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 Gene3D G3DSA:2.60.120.10 3 129 5.0E-15 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 Pfam PF03445 Putative nucleotidyltransferase DUF294 290 420 2.0E-41 T 29-03-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 Gene3D G3DSA:3.10.580.10 130 272 5.4E-13 T 29-03-2018 Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 458 594 7.9E-39 T 29-03-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 Pfam PF00571 CBS domain 222 263 0.0022 T 29-03-2018 IPR000644 CBS domain Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 Pfam PF00571 CBS domain 156 199 0.0072 T 29-03-2018 IPR000644 CBS domain Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 SUPERFAMILY SSF51206 9 135 9.95E-20 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 Pfam PF00027 Cyclic nucleotide-binding domain 31 111 4.6E-9 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS14190 783070d5a555bc09231d4e8b3086167d 599 SUPERFAMILY SSF54631 153 264 1.09E-14 T 29-03-2018 Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 Pfam PF00106 short chain dehydrogenase 15 201 9.8E-62 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 Gene3D G3DSA:3.40.50.720 52 266 1.4E-66 T 29-03-2018 Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 Gene3D G3DSA:3.40.50.720 6 51 2.0E-11 T 29-03-2018 Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 203 4.2E-6 T 29-03-2018 Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 6.0E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 6.0E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 6.0E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 230 250 6.0E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 6.0E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 6.0E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 3.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 3.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 3.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18995 1e77a11bda97dc962bea80db87c4f364 266 SUPERFAMILY SSF51735 9 265 1.16E-80 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS28325 be0548e784309c192ee31b627747bc80 217 Gene3D G3DSA:3.40.50.1000 79 208 7.3E-14 T 29-03-2018 IPR023214 HAD-like domain Y880_RS28325 be0548e784309c192ee31b627747bc80 217 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 7.1E-40 T 29-03-2018 Y880_RS28325 be0548e784309c192ee31b627747bc80 217 SUPERFAMILY SSF56784 2 210 1.58E-34 T 29-03-2018 IPR023214 HAD-like domain Y880_RS28325 be0548e784309c192ee31b627747bc80 217 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 202 7.0E-42 T 29-03-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y880_RS28325 be0548e784309c192ee31b627747bc80 217 Gene3D G3DSA:1.20.1440.100 16 78 6.0E-28 T 29-03-2018 Y880_RS28325 be0548e784309c192ee31b627747bc80 217 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 190 1.6E-26 T 29-03-2018 Y880_RS13755 1fb47cd378c7dfb05236ce7f8b582149 665 Gene3D G3DSA:3.40.50.720 295 646 9.9E-58 T 29-03-2018 Y880_RS13755 1fb47cd378c7dfb05236ce7f8b582149 665 Gene3D G3DSA:3.40.50.720 161 282 2.3E-26 T 29-03-2018 Y880_RS13755 1fb47cd378c7dfb05236ce7f8b582149 665 Pfam PF02719 Polysaccharide biosynthesis protein 301 608 7.0E-129 T 29-03-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Y880_RS13755 1fb47cd378c7dfb05236ce7f8b582149 665 SUPERFAMILY SSF53335 159 345 7.47E-17 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS13755 1fb47cd378c7dfb05236ce7f8b582149 665 SUPERFAMILY SSF51735 299 587 8.32E-51 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 Pfam PF00196 Bacterial regulatory proteins, luxR family 201 253 7.7E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 216 2.0E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 232 244 2.0E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 216 232 2.0E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 SMART SM00421 199 256 2.7E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 ProSitePatterns PS00622 LuxR-type HTH domain signature. 216 243 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 Gene3D G3DSA:1.10.10.10 61 259 1.9E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10365 cc8aed39136c31472d1b18cf717ec17e 268 SUPERFAMILY SSF46894 189 257 2.01E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS22900 d6dbab4817e74ee81f48bc8922e258c8 135 Pfam PF07498 Rho termination factor, N-terminal domain 102 133 1.1E-7 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y880_RS22900 d6dbab4817e74ee81f48bc8922e258c8 135 SUPERFAMILY SSF68912 100 133 5.89E-5 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y880_RS22900 d6dbab4817e74ee81f48bc8922e258c8 135 Gene3D G3DSA:1.10.720.10 98 135 3.6E-11 T 29-03-2018 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 838 17.304 T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:2.40.30.10 513 648 3.4E-30 T 29-03-2018 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:2.40.30.10 741 839 1.5E-28 T 29-03-2018 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF52156 621 747 5.75E-34 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF52540 332 510 1.71E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 265 315 1.9E-14 T 29-03-2018 IPR006847 Translation initiation factor IF-2, N-terminal Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 61 95 2.5E-11 T 29-03-2018 IPR013575 Initiation factor 2 associated domain, bacterial Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:3.30.56.50 4 46 1.5E-7 T 29-03-2018 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:3.30.56.50 267 308 2.2E-9 T 29-03-2018 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF46955 3 51 5.86E-10 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF50447 742 838 2.75E-32 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:3.40.50.10050 649 719 5.5E-24 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 343 499 2.7E-31 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 259 839 1.4E-263 T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF11987 Translation-initiation factor 2 625 730 2.0E-34 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF50447 513 595 1.79E-26 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:3.40.50.300 337 511 2.1E-39 T 29-03-2018 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 ProSitePatterns PS01176 Initiation factor 2 signature. 791 813 - T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Y880_RS22205 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF00009 Elongation factor Tu GTP binding domain 344 501 2.0E-34 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 PIRSF PIRSF000445 1 422 1.4E-157 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 31.249 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 SUPERFAMILY SSF69075 315 416 1.7E-27 T 29-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 SUPERFAMILY SSF69742 1 156 6.02E-49 T 29-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 1.2E-50 T 29-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 29-03-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 Gene3D G3DSA:1.10.1200.70 330 416 7.7E-25 T 29-03-2018 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 SUPERFAMILY SSF51735 160 313 3.38E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 Gene3D G3DSA:3.40.50.720 159 312 2.2E-23 T 29-03-2018 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 319 415 1.7E-23 T 29-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 1.1E-141 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y880_RS21700 fbe12e0416aebd409fddcfc1704da6ce 422 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 4.2E-50 T 29-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 SUPERFAMILY SSF53335 9 286 6.2E-55 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 PIRSF PIRSF037167 1 300 3.2E-140 T 29-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Pfam PF05175 Methyltransferase small domain 122 208 9.7E-16 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Gene3D G3DSA:1.10.8.10 7 94 3.6E-16 T 29-03-2018 Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Gene3D G3DSA:3.40.50.150 95 273 1.3E-36 T 29-03-2018 Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 1 293 52.859 T 29-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 6 287 5.9E-131 T 29-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 8 286 4.4E-80 T 29-03-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Y880_RS05450 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 197 203 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 Gene3D G3DSA:3.40.50.300 337 521 8.5E-24 T 29-03-2018 Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 SUPERFAMILY SSF52540 309 515 6.39E-31 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 Gene3D G3DSA:3.40.50.300 598 782 7.5E-14 T 29-03-2018 Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 Pfam PF04851 Type III restriction enzyme, res subunit 358 504 1.8E-32 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 Gene3D G3DSA:1.20.5.340 92 181 4.8E-4 T 29-03-2018 Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 SUPERFAMILY SSF52540 590 739 1.18E-18 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 SUPERFAMILY SSF52540 374 414 1.18E-18 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 154 315 3.1E-9 T 29-03-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 Pfam PF08463 EcoEI R protein C-terminal 967 1114 7.6E-17 T 29-03-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 SMART SM00487 353 528 9.9E-16 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS00825 c7783c00b22ed2c218801ae26c5bcc2e 1126 Pfam PF00271 Helicase conserved C-terminal domain 619 718 8.4E-9 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS25155 5b105919850375226c4956c483327c26 162 SUPERFAMILY SSF46785 10 69 1.56E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25155 5b105919850375226c4956c483327c26 162 SUPERFAMILY SSF54909 73 159 3.35E-20 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS25155 5b105919850375226c4956c483327c26 162 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 57 1.6E-19 T 29-03-2018 Y880_RS25155 5b105919850375226c4956c483327c26 162 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 1.0E-20 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS25155 5b105919850375226c4956c483327c26 162 Gene3D G3DSA:3.30.70.920 64 157 3.1E-24 T 29-03-2018 Y880_RS25155 5b105919850375226c4956c483327c26 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 3.3E-20 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS25155 5b105919850375226c4956c483327c26 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 3.3E-20 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS25155 5b105919850375226c4956c483327c26 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 3.3E-20 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS25155 5b105919850375226c4956c483327c26 162 Gene3D G3DSA:1.10.10.10 12 63 1.2E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25155 5b105919850375226c4956c483327c26 162 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y880_RS25155 5b105919850375226c4956c483327c26 162 SMART SM00344 11 120 5.9E-48 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 SUPERFAMILY SSF81301 29 185 2.4E-39 T 29-03-2018 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 Pfam PF12626 Polymerase A arginine-rich C-terminus 330 446 2.9E-44 T 29-03-2018 IPR025866 Polymerase A arginine-rich C-terminal domain Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 215 276 1.2E-20 T 29-03-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 13 459 38.005 T 29-03-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 Gene3D G3DSA:3.30.460.10 22 184 4.5E-51 T 29-03-2018 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 Gene3D G3DSA:1.10.3090.10 185 440 2.0E-44 T 29-03-2018 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 SUPERFAMILY SSF81891 186 421 1.29E-50 T 29-03-2018 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 25 457 2.9E-184 T 29-03-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Y880_RS22115 059e15ea857ea23aa1159cdbeaaa7fd2 467 Pfam PF01743 Poly A polymerase head domain 56 188 7.5E-38 T 29-03-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y880_RS05230 3d333226196d2c830d68c5f0ea7fc3c1 230 Gene3D G3DSA:1.10.10.10 126 230 3.6E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05230 3d333226196d2c830d68c5f0ea7fc3c1 230 SUPERFAMILY SSF52172 7 185 4.27E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS05230 3d333226196d2c830d68c5f0ea7fc3c1 230 SMART SM00448 6 116 7.6E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS05230 3d333226196d2c830d68c5f0ea7fc3c1 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 227 4.4E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS05230 3d333226196d2c830d68c5f0ea7fc3c1 230 SMART SM00862 151 227 2.8E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS05230 3d333226196d2c830d68c5f0ea7fc3c1 230 Pfam PF00072 Response regulator receiver domain 8 116 1.4E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS05230 3d333226196d2c830d68c5f0ea7fc3c1 230 Gene3D G3DSA:3.40.50.2300 1 125 1.6E-31 T 29-03-2018 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 Pfam PF01084 Ribosomal protein S18 19 68 3.1E-25 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 2.9E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 2.9E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 2.9E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 2.9E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 2.0E-22 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.983 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 29-03-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.5E-37 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 Gene3D G3DSA:4.10.640.10 1 76 2.7E-31 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23185 dbfded01c87925bee7d1bff9987c6438 76 SUPERFAMILY SSF46911 3 74 2.62E-29 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS14980 3810e3243d07f850309959d8186e5a0e 238 SMART SM00382 36 233 1.9E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS14980 3810e3243d07f850309959d8186e5a0e 238 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS14980 3810e3243d07f850309959d8186e5a0e 238 SUPERFAMILY SSF52540 4 227 4.31E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14980 3810e3243d07f850309959d8186e5a0e 238 Pfam PF00005 ABC transporter 27 181 4.7E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS14980 3810e3243d07f850309959d8186e5a0e 238 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 4 226 2.4E-107 T 29-03-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y880_RS14980 3810e3243d07f850309959d8186e5a0e 238 Gene3D G3DSA:3.40.50.300 1 236 4.9E-43 T 29-03-2018 Y880_RS22950 2da358b2c1f869800ac49bd23603da30 438 SUPERFAMILY SSF103473 8 372 1.57E-41 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS22950 2da358b2c1f869800ac49bd23603da30 438 Gene3D G3DSA:1.20.1250.20 4 192 9.7E-13 T 29-03-2018 Y880_RS22950 2da358b2c1f869800ac49bd23603da30 438 Pfam PF00083 Sugar (and other) transporter 39 158 9.6E-8 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS22950 2da358b2c1f869800ac49bd23603da30 438 Gene3D G3DSA:1.20.1250.20 197 385 2.4E-21 T 29-03-2018 Y880_RS22950 2da358b2c1f869800ac49bd23603da30 438 Pfam PF07690 Major Facilitator Superfamily 206 386 1.4E-18 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS12205 ce5535630450bea765a1e125a0f4606e 339 Gene3D G3DSA:3.40.190.10 205 288 8.6E-24 T 29-03-2018 Y880_RS12205 ce5535630450bea765a1e125a0f4606e 339 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 30 86 3.3E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12205 ce5535630450bea765a1e125a0f4606e 339 SUPERFAMILY SSF53850 114 323 8.87E-37 T 29-03-2018 Y880_RS12205 ce5535630450bea765a1e125a0f4606e 339 Pfam PF03466 LysR substrate binding domain 113 322 4.3E-35 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12205 ce5535630450bea765a1e125a0f4606e 339 SUPERFAMILY SSF46785 31 136 6.21E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12205 ce5535630450bea765a1e125a0f4606e 339 Gene3D G3DSA:3.40.190.10 106 204 1.7E-15 T 29-03-2018 Y880_RS12205 ce5535630450bea765a1e125a0f4606e 339 Gene3D G3DSA:1.10.10.10 7 105 6.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04075 412b561faef652036c03400ece8f6422 319 ProSitePatterns PS01053 Arginase family signature. 241 262 - T 29-03-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Y880_RS04075 412b561faef652036c03400ece8f6422 319 PIRSF PIRSF036979 15 316 1.1E-102 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS04075 412b561faef652036c03400ece8f6422 319 PRINTS PR00116 Arginase signature 238 267 2.2E-13 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS04075 412b561faef652036c03400ece8f6422 319 PRINTS PR00116 Arginase signature 125 140 2.2E-13 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS04075 412b561faef652036c03400ece8f6422 319 SUPERFAMILY SSF52768 4 313 5.94E-100 T 29-03-2018 Y880_RS04075 412b561faef652036c03400ece8f6422 319 Pfam PF00491 Arginase family 39 310 6.7E-89 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS04075 412b561faef652036c03400ece8f6422 319 Gene3D G3DSA:3.40.800.10 12 315 2.9E-99 T 29-03-2018 Y880_RS04075 412b561faef652036c03400ece8f6422 319 TIGRFAM TIGR01230 agmatinase: agmatinase 34 311 3.5E-63 T 29-03-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 Y880_RS23885 d671422f9ab5d8423cd8f0ff25039ee2 533 Pfam PF03109 ABC1 family 114 233 1.7E-36 T 29-03-2018 IPR004147 UbiB domain Y880_RS23885 d671422f9ab5d8423cd8f0ff25039ee2 533 Gene3D G3DSA:3.30.200.20 106 246 1.8E-24 T 29-03-2018 Y880_RS23885 d671422f9ab5d8423cd8f0ff25039ee2 533 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 533 54.219 T 29-03-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Y880_RS23885 d671422f9ab5d8423cd8f0ff25039ee2 533 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 447 1.6E-177 T 29-03-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Y880_RS23885 d671422f9ab5d8423cd8f0ff25039ee2 533 SUPERFAMILY SSF56112 97 160 1.86E-47 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS23885 d671422f9ab5d8423cd8f0ff25039ee2 533 SUPERFAMILY SSF56112 195 438 1.86E-47 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Gene3D G3DSA:1.10.287.130 273 344 1.2E-21 T 29-03-2018 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SMART SM00448 665 781 4.3E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SMART SM00304 191 243 1.4E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Gene3D G3DSA:3.40.50.2300 515 657 0.0025 T 29-03-2018 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SUPERFAMILY SSF52172 663 786 5.12E-38 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Pfam PF00512 His Kinase A (phospho-acceptor) domain 284 348 5.9E-22 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SUPERFAMILY SSF158472 191 240 1.27E-5 T 29-03-2018 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Pfam PF00072 Response regulator receiver domain 668 781 1.1E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SUPERFAMILY SSF47384 269 349 4.51E-23 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 36 167 3.5E-20 T 29-03-2018 IPR019247 Histidine kinase BarA, N-terminal Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Gene3D G3DSA:1.20.120.160 800 915 3.4E-13 T 29-03-2018 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SMART SM00073 817 913 1.1E-12 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Pfam PF01627 Hpt domain 826 907 5.3E-12 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Gene3D G3DSA:3.30.450.20 29 115 1.4E-4 T 29-03-2018 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SUPERFAMILY SSF55874 337 509 2.75E-46 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SMART SM00387 395 511 3.4E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Gene3D G3DSA:3.30.565.10 352 514 2.0E-51 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 510 1.4E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SMART SM00388 283 348 4.0E-27 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 Gene3D G3DSA:3.40.50.2300 658 798 1.4E-41 T 29-03-2018 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SUPERFAMILY SSF47226 764 777 3.79E-22 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 SUPERFAMILY SSF47226 806 901 3.79E-22 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 450 5.0E-16 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 489 5.0E-16 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 464 5.0E-16 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS01435 dfcb4371aca6479e2369ef4593ffc548 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 508 5.0E-16 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 Gene3D G3DSA:2.30.40.10 1 116 4.8E-19 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 Pfam PF07969 Amidohydrolase family 50 532 1.2E-120 T 29-03-2018 IPR013108 Amidohydrolase 3 Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 Gene3D G3DSA:2.30.40.10 472 540 1.2E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 SUPERFAMILY SSF51338 1 62 4.61E-25 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 SUPERFAMILY SSF51338 491 537 4.61E-25 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 SUPERFAMILY SSF51556 61 123 2.69E-43 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 SUPERFAMILY SSF51556 203 491 2.69E-43 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS10925 1a77ff4ed859a66958a07d9fd9b1056c 612 Gene3D G3DSA:3.20.20.140 187 471 7.3E-36 T 29-03-2018 Y880_RS02330 6f5666942ffb9cf1e19ff13d7252d8d4 132 TIGRFAM TIGR00208 fliS: flagellar protein FliS 4 119 7.2E-17 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS02330 6f5666942ffb9cf1e19ff13d7252d8d4 132 PIRSF PIRSF039090 1 130 1.5E-35 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS02330 6f5666942ffb9cf1e19ff13d7252d8d4 132 Pfam PF02561 Flagellar protein FliS 6 119 2.6E-28 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS02330 6f5666942ffb9cf1e19ff13d7252d8d4 132 SUPERFAMILY SSF101116 13 121 2.35E-28 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS02330 6f5666942ffb9cf1e19ff13d7252d8d4 132 Gene3D G3DSA:1.20.120.340 1 123 2.2E-30 T 29-03-2018 Y880_RS20215 a69da7f68303a06bdc22e080fa1c4826 228 Gene3D G3DSA:1.10.8.10 155 216 1.1E-13 T 29-03-2018 Y880_RS20215 a69da7f68303a06bdc22e080fa1c4826 228 PIRSF PIRSF029669 15 228 2.3E-82 T 29-03-2018 IPR016932 Uncharacterised conserved protein UCP029669 Y880_RS20215 a69da7f68303a06bdc22e080fa1c4826 228 Gene3D G3DSA:3.90.1530.10 25 154 2.7E-38 T 29-03-2018 Y880_RS20215 a69da7f68303a06bdc22e080fa1c4826 228 SUPERFAMILY SSF110849 29 225 8.37E-58 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS20215 a69da7f68303a06bdc22e080fa1c4826 228 Pfam PF08857 Putative ParB-like nuclease 32 187 1.6E-46 T 29-03-2018 IPR014956 Putative ParB-like nuclease Y880_RS27800 b45af8a37fbbc3c81b15ff0447ac3a78 416 Gene3D G3DSA:2.40.160.10 5 416 1.5E-109 T 29-03-2018 Y880_RS27800 b45af8a37fbbc3c81b15ff0447ac3a78 416 Pfam PF03573 outer membrane porin, OprD family 26 414 2.3E-150 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 Gene3D G3DSA:3.90.1150.10 330 452 3.9E-25 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 Pfam PF00202 Aminotransferase class-III 28 439 1.8E-121 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 PIRSF PIRSF000521 29 416 4.7E-28 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 SUPERFAMILY SSF53383 10 442 2.87E-130 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 447 49.797 T 29-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 Gene3D G3DSA:3.40.640.10 193 329 4.8E-45 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 442 8.0E-175 T 29-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Y880_RS28765 7caee573ce7ecc27f133d467a27a6496 467 Gene3D G3DSA:3.90.1150.10 3 172 1.1E-46 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS11690 0fa0ea14da51c05c6aee6a84364df796 291 Pfam PF13614 AAA domain 1 158 2.7E-25 T 29-03-2018 IPR025669 AAA domain Y880_RS11690 0fa0ea14da51c05c6aee6a84364df796 291 Gene3D G3DSA:3.40.50.300 1 277 9.2E-46 T 29-03-2018 Y880_RS11690 0fa0ea14da51c05c6aee6a84364df796 291 SUPERFAMILY SSF52540 1 266 2.8E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01575 67fa2c10583f99dda767408fee617883 154 Pfam PF00578 AhpC/TSA family 26 132 4.5E-18 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS01575 67fa2c10583f99dda767408fee617883 154 ProSitePatterns PS00194 Thioredoxin family active site. 43 61 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS01575 67fa2c10583f99dda767408fee617883 154 Gene3D G3DSA:3.40.30.10 23 152 1.2E-26 T 29-03-2018 Y880_RS01575 67fa2c10583f99dda767408fee617883 154 SUPERFAMILY SSF52833 6 150 5.8E-30 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS22155 fa722109d5f0141e3a25c229a6f068e0 1088 Pfam PF00691 OmpA family 907 946 1.9E-4 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS22155 fa722109d5f0141e3a25c229a6f068e0 1088 Pfam PF05359 Domain of Unknown Function (DUF748) 140 291 2.4E-33 T 29-03-2018 IPR008023 Protein of unknown function DUF748 Y880_RS22155 fa722109d5f0141e3a25c229a6f068e0 1088 Pfam PF05359 Domain of Unknown Function (DUF748) 692 837 7.0E-41 T 29-03-2018 IPR008023 Protein of unknown function DUF748 Y880_RS22155 fa722109d5f0141e3a25c229a6f068e0 1088 Pfam PF05359 Domain of Unknown Function (DUF748) 476 627 5.3E-32 T 29-03-2018 IPR008023 Protein of unknown function DUF748 Y880_RS22155 fa722109d5f0141e3a25c229a6f068e0 1088 SUPERFAMILY SSF103088 904 945 1.7E-5 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS22155 fa722109d5f0141e3a25c229a6f068e0 1088 Gene3D G3DSA:3.30.1330.60 383 1074 5.9E-18 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS13440 14fff67fc2784b2ada72181fd6e31de0 286 Gene3D G3DSA:1.20.1540.10 82 279 1.5E-31 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Y880_RS13440 14fff67fc2784b2ada72181fd6e31de0 286 Pfam PF16733 Rhomboid N-terminal domain 2 68 2.7E-32 T 29-03-2018 IPR031976 Rhomboid protease, N-terminal Y880_RS13440 14fff67fc2784b2ada72181fd6e31de0 286 SUPERFAMILY SSF144091 82 285 7.46E-36 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Y880_RS13440 14fff67fc2784b2ada72181fd6e31de0 286 Pfam PF01694 Rhomboid family 136 277 6.7E-30 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 112 4.2E-39 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 514 531 - T 29-03-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Gene3D G3DSA:3.90.226.10 838 1088 8.8E-55 T 29-03-2018 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Gene3D G3DSA:2.40.50.100 484 558 3.1E-15 T 29-03-2018 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 SUPERFAMILY SSF52096 807 1075 4.97E-66 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 SUPERFAMILY SSF52096 581 838 1.33E-48 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 SMART SM00878 343 451 4.5E-46 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Gene3D G3DSA:3.30.470.20 213 454 1.1E-85 T 29-03-2018 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Gene3D G3DSA:3.30.1490.20 126 212 7.6E-14 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 327 1.3E-57 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Pfam PF01039 Carboxyl transferase domain 605 1077 2.1E-70 T 29-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Gene3D G3DSA:3.40.50.20 5 125 3.5E-44 T 29-03-2018 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Pfam PF02785 Biotin carboxylase C-terminal domain 343 451 9.4E-29 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 SUPERFAMILY SSF51230 485 558 1.16E-15 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 291 298 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 SUPERFAMILY SSF52440 4 114 1.65E-38 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 SUPERFAMILY SSF56059 85 334 1.94E-56 T 29-03-2018 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Gene3D G3DSA:3.90.226.10 565 836 7.5E-45 T 29-03-2018 Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 Pfam PF00364 Biotin-requiring enzyme 493 555 4.5E-12 T 29-03-2018 IPR000089 Biotin/lipoyl attachment Y880_RS03965 9dff7b75ef4ca3b540ff0af7a18f8a14 1095 SUPERFAMILY SSF51246 338 457 6.28E-30 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 SMART SM01008 223 312 2.2E-23 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Gene3D G3DSA:3.90.1170.50 200 349 4.8E-29 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Gene3D G3DSA:3.30.365.10 350 444 1.1E-27 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 SUPERFAMILY SSF56003 12 256 5.93E-47 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Gene3D G3DSA:3.30.365.10 618 765 5.4E-36 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Gene3D G3DSA:3.30.365.10 445 617 3.9E-29 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 14 36 2.4E-5 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 SUPERFAMILY SSF56003 334 762 1.57E-111 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 332 614 3.9E-28 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 628 709 9.2E-15 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 60 191 7.7E-17 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 Gene3D G3DSA:3.30.365.10 42 199 2.4E-39 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS09240 54ce95ea57f5e68941d0538fe9931835 771 PIRSF PIRSF036389 4 769 3.0E-281 T 29-03-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related Y880_RS18235 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 SUPERFAMILY SSF117991 7 93 4.32E-25 T 29-03-2018 IPR027471 YbeD-like domain Y880_RS18235 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 Gene3D G3DSA:3.30.70.260 8 93 1.8E-27 T 29-03-2018 Y880_RS18235 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 4 93 25.298 T 29-03-2018 IPR007454 Uncharacterised protein family UPF0250 Y880_RS18235 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 Pfam PF04359 Protein of unknown function (DUF493) 10 93 2.1E-27 T 29-03-2018 IPR007454 Uncharacterised protein family UPF0250 Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 Gene3D G3DSA:3.40.50.300 22 496 1.2E-20 T 29-03-2018 Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 SMART SM00491 562 695 1.1E-29 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 Gene3D G3DSA:3.40.50.300 529 710 1.2E-10 T 29-03-2018 Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 SUPERFAMILY SSF52540 516 689 8.54E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 SUPERFAMILY SSF52540 475 489 8.54E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 SUPERFAMILY SSF52540 57 105 8.54E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 SUPERFAMILY SSF52540 208 283 8.54E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02020 244417ba132609a70f0fbe4822514b12 714 Pfam PF13307 Helicase C-terminal domain 553 708 4.3E-34 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 Gene3D G3DSA:1.10.287.130 206 272 5.9E-20 T 29-03-2018 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 SMART SM00388 209 276 4.4E-21 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF11808 Domain of unknown function (DUF3329) 9 94 2.2E-28 T 29-03-2018 IPR021766 Protein of unknown function DUF3329 GO:0004673 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 322 430 4.2E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 Gene3D G3DSA:3.30.565.10 280 442 2.4E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 SMART SM00091 102 170 6.6E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 SUPERFAMILY SSF55874 265 429 1.57E-40 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 SMART SM00387 321 433 2.4E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 Gene3D G3DSA:3.30.450.20 83 205 8.3E-11 T 29-03-2018 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 98 429 3.5E-139 T 29-03-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF00989 PAS fold 102 156 1.6E-5 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 275 5.2E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 386 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 430 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 SUPERFAMILY SSF55785 113 208 1.12E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS25430 a905ba48ac467246d54f7e3c1bfab724 443 SUPERFAMILY SSF47384 195 276 7.65E-22 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS06670 6c0394fde8e2690c49765f7e901c3556 278 Pfam PF02567 Phenazine biosynthesis-like protein 7 274 6.3E-85 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS06670 6c0394fde8e2690c49765f7e901c3556 278 SUPERFAMILY SSF54506 2 277 2.27E-67 T 29-03-2018 Y880_RS06670 6c0394fde8e2690c49765f7e901c3556 278 Gene3D G3DSA:3.10.310.10 125 267 2.6E-34 T 29-03-2018 Y880_RS06670 6c0394fde8e2690c49765f7e901c3556 278 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 273 1.0E-55 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS06670 6c0394fde8e2690c49765f7e901c3556 278 PIRSF PIRSF016184 1 278 7.4E-82 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS06670 6c0394fde8e2690c49765f7e901c3556 278 Gene3D G3DSA:3.10.310.10 1 124 3.6E-29 T 29-03-2018 Y880_RS01805 eb7516fd430917af8dd34d6d2b2e97d5 83 SUPERFAMILY SSF64307 6 82 1.07E-22 T 29-03-2018 IPR001455 TusA-like domain Y880_RS01805 eb7516fd430917af8dd34d6d2b2e97d5 83 Pfam PF01206 Sulfurtransferase TusA 14 82 1.1E-21 T 29-03-2018 IPR001455 TusA-like domain Y880_RS01805 eb7516fd430917af8dd34d6d2b2e97d5 83 Gene3D G3DSA:3.30.110.40 6 83 3.1E-25 T 29-03-2018 IPR001455 TusA-like domain Y880_RS01805 eb7516fd430917af8dd34d6d2b2e97d5 83 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 15 39 - T 29-03-2018 IPR001455 TusA-like domain Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 Pfam PF01227 GTP cyclohydrolase I 4 180 1.7E-76 T 29-03-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 108 118 - T 29-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 4 181 3.6E-78 T 29-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 60 76 - T 29-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 SUPERFAMILY SSF55620 3 181 4.74E-79 T 29-03-2018 Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 Gene3D G3DSA:3.30.1130.10 51 181 1.8E-62 T 29-03-2018 Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 Gene3D G3DSA:1.10.286.10 2 49 1.6E-19 T 29-03-2018 Y880_RS05430 34e6fa3509af1020796fbc27caf66f39 181 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 37.02 T 29-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 Gene3D G3DSA:3.40.50.720 137 306 1.1E-46 T 29-03-2018 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 297 304 - T 29-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 139 249 1.9E-20 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 SMART SM00846 138 299 5.1E-53 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 140 473 3.2E-111 T 29-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 304 461 1.2E-47 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 SUPERFAMILY SSF55347 299 462 2.44E-55 T 29-03-2018 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 257 270 1.2E-18 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 320 336 1.2E-18 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 418 433 1.2E-18 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 376 393 1.2E-18 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 293 311 1.2E-18 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 SUPERFAMILY SSF51735 139 315 8.05E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13005 0efeb4a48ae49bd21d68d466869efdd2 488 Gene3D G3DSA:3.30.360.10 307 463 1.2E-51 T 29-03-2018 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 261 349 1.1E-19 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 253 2.9E-82 T 29-03-2018 IPR006222 Glycine cleavage T-protein-like, N-terminal Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 355 43.61 T 29-03-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 4 354 3.0E-125 T 29-03-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 SUPERFAMILY SSF103025 4 276 4.55E-87 T 29-03-2018 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:2.40.30.110 277 358 3.1E-19 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:4.10.1250.10 231 275 7.0E-16 T 29-03-2018 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 SUPERFAMILY SSF101790 269 357 9.81E-26 T 29-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 PIRSF PIRSF006487 1 358 2.2E-80 T 29-03-2018 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:3.30.1360.120 132 230 5.3E-15 T 29-03-2018 Y880_RS24675 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:3.30.1360.120 3 131 2.1E-33 T 29-03-2018 Y880_RS08365 4afad971919b64a83785feeb87058158 306 PIRSF PIRSF000103 5 303 4.3E-76 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y880_RS08365 4afad971919b64a83785feeb87058158 306 Gene3D G3DSA:1.10.1040.10 174 299 5.6E-9 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS08365 4afad971919b64a83785feeb87058158 306 Gene3D G3DSA:3.40.50.720 10 168 1.4E-19 T 29-03-2018 Y880_RS08365 4afad971919b64a83785feeb87058158 306 SUPERFAMILY SSF48179 183 296 3.74E-5 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS08365 4afad971919b64a83785feeb87058158 306 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 13 165 8.6E-17 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 Y880_RS08365 4afad971919b64a83785feeb87058158 306 SUPERFAMILY SSF51735 13 165 1.25E-22 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18630 49c42ed5574ab0ebf0f2e360c5ff53f0 68 SMART SM00530 4 59 2.8E-18 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS18630 49c42ed5574ab0ebf0f2e360c5ff53f0 68 Pfam PF01381 Helix-turn-helix 5 57 2.0E-16 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS18630 49c42ed5574ab0ebf0f2e360c5ff53f0 68 SUPERFAMILY SSF47413 3 64 2.12E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS18630 49c42ed5574ab0ebf0f2e360c5ff53f0 68 Gene3D G3DSA:3.30.1190.10 25 68 8.3E-12 T 29-03-2018 Y880_RS18630 49c42ed5574ab0ebf0f2e360c5ff53f0 68 Gene3D G3DSA:1.10.10.60 2 24 1.6E-7 T 29-03-2018 Y880_RS00990 e064d60a2d6ee4d6af486b66e49a6918 199 PIRSF PIRSF000239 1 198 6.5E-54 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS00990 e064d60a2d6ee4d6af486b66e49a6918 199 SUPERFAMILY SSF52833 3 193 3.43E-64 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS00990 e064d60a2d6ee4d6af486b66e49a6918 199 Gene3D G3DSA:3.30.1020.10 161 198 1.2E-15 T 29-03-2018 Y880_RS00990 e064d60a2d6ee4d6af486b66e49a6918 199 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 159 192 1.4E-12 T 29-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS00990 e064d60a2d6ee4d6af486b66e49a6918 199 Gene3D G3DSA:3.40.30.10 4 160 1.2E-38 T 29-03-2018 Y880_RS00990 e064d60a2d6ee4d6af486b66e49a6918 199 Pfam PF00578 AhpC/TSA family 5 138 9.8E-34 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 16 39 1.1E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 Pfam PF07963 Prokaryotic N-terminal methylation motif 14 38 1.8E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 Pfam PF08334 Type II secretion system (T2SS), protein G 41 147 3.7E-40 T 29-03-2018 IPR013545 Type II secretion system protein G Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 SUPERFAMILY SSF54523 45 147 2.09E-34 T 29-03-2018 Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 18 43 3.1E-16 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 54 72 3.1E-16 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 Gene3D G3DSA:3.30.700.10 32 147 1.5E-28 T 29-03-2018 Y880_RS00070 535e5c93fac504cf8b1ebbad95d742a0 149 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 17 148 4.6E-55 T 29-03-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Y880_RS00565 cf7cc224abb42244ab8be921c3eb8808 471 PIRSF PIRSF006060 1 465 1.6E-74 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS00565 cf7cc224abb42244ab8be921c3eb8808 471 Pfam PF00324 Amino acid permease 22 450 2.1E-117 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS00565 cf7cc224abb42244ab8be921c3eb8808 471 ProSitePatterns PS00218 Amino acid permeases signature. 47 77 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS00620 5a63a5ff4348ace92764a44915f3f662 177 Pfam PF12365 Protein of unknown function (DUF3649) 143 169 4.9E-7 T 29-03-2018 IPR022109 Protein of unknown function DUF3649 Y880_RS02945 f6e497868a0d6a93a12013d8ef521437 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 72 89 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS02945 f6e497868a0d6a93a12013d8ef521437 409 Gene3D G3DSA:1.20.1250.20 211 406 7.8E-21 T 29-03-2018 Y880_RS02945 f6e497868a0d6a93a12013d8ef521437 409 Pfam PF07690 Major Facilitator Superfamily 22 356 7.9E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS02945 f6e497868a0d6a93a12013d8ef521437 409 Gene3D G3DSA:1.20.1250.20 7 196 2.6E-24 T 29-03-2018 Y880_RS02945 f6e497868a0d6a93a12013d8ef521437 409 SUPERFAMILY SSF103473 18 395 2.88E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 343 599 6.5E-70 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 Pfam PF13721 SecD export protein N-terminal TM region 2 104 8.5E-34 T 29-03-2018 IPR027398 SecD export protein N-terminal TM domain Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 SUPERFAMILY SSF82866 325 346 2.09E-42 T 29-03-2018 Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 SUPERFAMILY SSF82866 416 611 2.09E-42 T 29-03-2018 Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 124 606 4.8E-134 T 29-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 Gene3D G3DSA:1.20.1640.10 377 611 1.7E-32 T 29-03-2018 Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 Pfam PF07549 SecD/SecF GG Motif 117 141 4.1E-6 T 29-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 619 50.12 T 29-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Y880_RS17310 8e3d102bbd07675990fba89d144b61fa 620 Pfam PF02355 Protein export membrane protein 443 606 2.7E-17 T 29-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 Gene3D G3DSA:3.40.190.10 176 268 2.7E-25 T 29-03-2018 Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 SUPERFAMILY SSF46785 1 85 6.2E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.5E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 Gene3D G3DSA:3.40.190.10 87 175 1.8E-18 T 29-03-2018 Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 Gene3D G3DSA:1.10.10.10 1 82 1.9E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 Pfam PF03466 LysR substrate binding domain 88 294 7.7E-44 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS25340 935590f0a244a1c748ceaae8427e68fb 310 SUPERFAMILY SSF53850 88 294 1.02E-37 T 29-03-2018 Y880_RS28660 f9d07bc6ae206d6244cc2e621f6e581e 394 Gene3D G3DSA:3.90.1150.10 260 394 4.5E-58 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS28660 f9d07bc6ae206d6244cc2e621f6e581e 394 PIRSF PIRSF001434 1 394 2.2E-147 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS28660 f9d07bc6ae206d6244cc2e621f6e581e 394 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS28660 f9d07bc6ae206d6244cc2e621f6e581e 394 Gene3D G3DSA:3.40.640.10 13 259 5.3E-59 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS28660 f9d07bc6ae206d6244cc2e621f6e581e 394 SUPERFAMILY SSF53383 17 393 6.12E-121 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS28660 f9d07bc6ae206d6244cc2e621f6e581e 394 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 17 391 8.0E-153 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 329 4.3E-69 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 Gene3D G3DSA:3.30.390.30 337 465 1.3E-42 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 3.2E-39 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 SUPERFAMILY SSF51905 1 375 2.59E-64 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 SUPERFAMILY SSF55424 344 465 9.11E-41 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 Gene3D G3DSA:3.40.50.720 169 336 1.7E-31 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 2.6E-35 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.6E-35 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 2.6E-35 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 2.6E-35 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 2.6E-35 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 465 3.8E-158 T 29-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 Gene3D G3DSA:3.50.50.60 1 168 1.9E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 5.4E-78 T 29-03-2018 Y880_RS22655 d533ec572d921adfbc6c0d427db1bdd8 467 PIRSF PIRSF000350 1 463 3.6E-91 T 29-03-2018 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.10.10 453 503 3.7E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 616 46.887 T 29-03-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 SUPERFAMILY SSF88946 115 450 7.72E-105 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04545 Sigma-70, region 4 551 604 1.0E-18 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 4.7E-13 T 29-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 SUPERFAMILY SSF88659 513 615 9.16E-27 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 SUPERFAMILY SSF88659 456 529 1.0E-20 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 379 615 2.8E-122 T 29-03-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 576 591 6.5E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 591 602 6.5E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 407 420 6.5E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 431 439 6.5E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 555 567 6.5E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04546 Sigma-70, non-essential region 139 352 3.1E-65 T 29-03-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04539 Sigma-70 region 3 462 538 7.3E-30 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04542 Sigma-70 region 2 383 452 1.7E-21 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 407 420 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.601.10 2 114 1.9E-12 T 29-03-2018 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.601.10 115 452 1.1E-106 T 29-03-2018 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 576 602 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF03979 Sigma-70 factor, region 1.1 6 83 6.6E-30 T 29-03-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 379 604 1.2E-37 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29590 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.10.10 545 616 8.6E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14335 1bc3aed8d76f3e04674ced24e3083f05 248 Gene3D G3DSA:3.40.190.10 17 122 1.2E-7 T 29-03-2018 Y880_RS14335 1bc3aed8d76f3e04674ced24e3083f05 248 SUPERFAMILY SSF53850 19 240 1.99E-30 T 29-03-2018 Y880_RS14335 1bc3aed8d76f3e04674ced24e3083f05 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 239 1.6E-15 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS14335 1bc3aed8d76f3e04674ced24e3083f05 248 Gene3D G3DSA:3.40.190.10 123 198 1.2E-7 T 29-03-2018 Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 SUPERFAMILY SSF52402 133 269 9.21E-16 T 29-03-2018 Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 Gene3D G3DSA:3.40.50.620 1 128 1.8E-22 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 PRINTS PR01438 Universal stress protein signature 231 243 1.2E-5 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 PRINTS PR01438 Universal stress protein signature 133 151 1.2E-5 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 PRINTS PR01438 Universal stress protein signature 249 271 1.2E-5 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 SUPERFAMILY SSF52402 1 124 1.09E-22 T 29-03-2018 Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 Gene3D G3DSA:3.40.50.620 129 271 2.6E-17 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 Pfam PF00582 Universal stress protein family 133 270 1.1E-15 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS23690 6f258099e6aba92c699326a2620dae85 271 Pfam PF00582 Universal stress protein family 1 124 5.4E-21 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS09435 84a48bbcea19a24dbbd8d7ad5376c44d 312 SUPERFAMILY SSF46785 7 92 1.18E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09435 84a48bbcea19a24dbbd8d7ad5376c44d 312 Gene3D G3DSA:3.40.190.10 185 270 1.8E-20 T 29-03-2018 Y880_RS09435 84a48bbcea19a24dbbd8d7ad5376c44d 312 SUPERFAMILY SSF53850 94 303 1.18E-38 T 29-03-2018 Y880_RS09435 84a48bbcea19a24dbbd8d7ad5376c44d 312 Gene3D G3DSA:3.40.190.10 97 184 7.2E-14 T 29-03-2018 Y880_RS09435 84a48bbcea19a24dbbd8d7ad5376c44d 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 9.9E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09435 84a48bbcea19a24dbbd8d7ad5376c44d 312 Pfam PF03466 LysR substrate binding domain 93 300 2.6E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09435 84a48bbcea19a24dbbd8d7ad5376c44d 312 Gene3D G3DSA:1.10.10.10 7 95 1.7E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05725 fe12709c82cf7e05351be7dc48a4b062 470 PIRSF PIRSF005522 1 470 1.3E-231 T 29-03-2018 IPR016450 Uncharacterised conserved protein UCP005522 Y880_RS05725 fe12709c82cf7e05351be7dc48a4b062 470 Gene3D G3DSA:3.30.470.20 10 205 0.039 T 29-03-2018 Y880_RS05725 fe12709c82cf7e05351be7dc48a4b062 470 SUPERFAMILY SSF56059 15 210 1.94E-63 T 29-03-2018 Y880_RS05725 fe12709c82cf7e05351be7dc48a4b062 470 SUPERFAMILY SSF56059 315 461 1.94E-63 T 29-03-2018 Y880_RS05725 fe12709c82cf7e05351be7dc48a4b062 470 Pfam PF14403 Circularly permuted ATP-grasp type 2 72 446 2.2E-165 T 29-03-2018 IPR025841 Circularly permuted ATP-grasp type 2 Y880_RS05725 fe12709c82cf7e05351be7dc48a4b062 470 Gene3D G3DSA:3.30.470.20 335 464 1.4E-5 T 29-03-2018 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 25 113 2.3E-25 T 29-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 SUPERFAMILY SSF51690 116 280 1.41E-60 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 17 279 4.1E-95 T 29-03-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 PIRSF PIRSF006250 7 282 9.1E-110 T 29-03-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 116 279 6.9E-57 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 Gene3D G3DSA:3.90.1170.20 4 140 1.3E-43 T 29-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 SUPERFAMILY SSF54675 12 114 7.06E-32 T 29-03-2018 Y880_RS20930 802a954d2b7085ebb8cae99ac3e99d4d 282 Gene3D G3DSA:3.20.20.70 141 270 3.9E-44 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS01045 1ce91fa625a6f94535b5c11ef1956f6e 200 Pfam PF01323 DSBA-like thioredoxin domain 1 175 1.7E-13 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 Y880_RS01045 1ce91fa625a6f94535b5c11ef1956f6e 200 Gene3D G3DSA:3.40.30.10 1 197 7.9E-36 T 29-03-2018 Y880_RS01045 1ce91fa625a6f94535b5c11ef1956f6e 200 SUPERFAMILY SSF52833 1 196 1.14E-36 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:1.10.4050.10 8 129 2.4E-13 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:1.10.4050.10 552 661 7.6E-20 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:1.20.120.330 837 980 2.9E-38 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 45 982 19.837 T 29-03-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 577 830 1.2E-93 T 29-03-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 48 296 5.4E-98 T 29-03-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:1.20.120.330 305 460 2.0E-48 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF08335 GlnD PII-uridylyltransferase 317 456 2.8E-44 T 29-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF08335 GlnD PII-uridylyltransferase 852 955 2.8E-12 T 29-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81593 307 456 1.18E-41 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81593 840 979 1.02E-28 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81301 29 306 5.07E-88 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81301 549 840 9.48E-83 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:3.30.460.10 662 836 2.3E-56 T 29-03-2018 Y880_RS23610 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:3.30.460.10 131 304 5.3E-61 T 29-03-2018 Y880_RS06635 9436461e40ce5a991af281035c88775f 255 Pfam PF04116 Fatty acid hydroxylase superfamily 76 206 1.6E-28 T 29-03-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Y880_RS04460 d9dc779f9184b3f1ebf15da62b5f56c1 304 Gene3D G3DSA:1.10.3430.10 2 295 1.3E-63 T 29-03-2018 Y880_RS04460 d9dc779f9184b3f1ebf15da62b5f56c1 304 PIRSF PIRSF016502 3 303 3.7E-71 T 29-03-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 Y880_RS04460 d9dc779f9184b3f1ebf15da62b5f56c1 304 Pfam PF03253 Urea transporter 11 282 4.3E-50 T 29-03-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 Y880_RS20800 5a365aa8f2f2dcbe2b0c31644c19fbd8 187 Pfam PF12844 Helix-turn-helix domain 7 69 2.5E-7 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS20800 5a365aa8f2f2dcbe2b0c31644c19fbd8 187 Pfam PF07883 Cupin domain 109 175 1.7E-17 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS20800 5a365aa8f2f2dcbe2b0c31644c19fbd8 187 SMART SM00530 9 64 2.6E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS20800 5a365aa8f2f2dcbe2b0c31644c19fbd8 187 SUPERFAMILY SSF51182 57 179 2.41E-27 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS20800 5a365aa8f2f2dcbe2b0c31644c19fbd8 187 Gene3D G3DSA:2.60.120.10 68 186 3.6E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS20800 5a365aa8f2f2dcbe2b0c31644c19fbd8 187 Gene3D G3DSA:1.10.260.40 2 67 2.1E-11 T 29-03-2018 Y880_RS20800 5a365aa8f2f2dcbe2b0c31644c19fbd8 187 SUPERFAMILY SSF47413 3 69 1.27E-11 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS02815 c34c88c9c8e543e308e70afa64c24bd0 339 SUPERFAMILY SSF51679 28 326 1.24E-55 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS02815 c34c88c9c8e543e308e70afa64c24bd0 339 Pfam PF00296 Luciferase-like monooxygenase 31 227 4.5E-37 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS02815 c34c88c9c8e543e308e70afa64c24bd0 339 Gene3D G3DSA:3.20.20.30 8 329 2.8E-55 T 29-03-2018 Y880_RS02815 c34c88c9c8e543e308e70afa64c24bd0 339 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 18 326 3.7E-120 T 29-03-2018 IPR020020 Luciferase-type oxidoreductase Y880_RS14775 7bd9f6ecd6cde7c906a159cc1639d896 243 SUPERFAMILY SSF48452 10 65 6.33E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS14775 7bd9f6ecd6cde7c906a159cc1639d896 243 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 200 241 1.6E-16 T 29-03-2018 IPR020011 Motility protein FimV, C-terminal Y880_RS14775 7bd9f6ecd6cde7c906a159cc1639d896 243 Gene3D G3DSA:1.25.40.10 3 88 4.8E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS14775 7bd9f6ecd6cde7c906a159cc1639d896 243 Gene3D G3DSA:1.25.40.10 190 243 0.0025 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17280 1df965c74fe08cf678ff5c2716a1800a 163 SUPERFAMILY SSF46785 2 132 1.82E-36 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17280 1df965c74fe08cf678ff5c2716a1800a 163 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 4.5E-47 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type Y880_RS17280 1df965c74fe08cf678ff5c2716a1800a 163 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 5.7E-67 T 29-03-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 Y880_RS17280 1df965c74fe08cf678ff5c2716a1800a 163 Pfam PF02082 Transcriptional regulator 1 83 8.0E-28 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type Y880_RS17280 1df965c74fe08cf678ff5c2716a1800a 163 Gene3D G3DSA:1.10.10.10 1 141 1.7E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03265 5ceec8146b243e5dbbbd6b02170d9dd4 203 SUPERFAMILY SSF52540 12 203 1.53E-71 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03265 5ceec8146b243e5dbbbd6b02170d9dd4 203 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 29 203 1.3E-68 T 29-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Y880_RS03265 5ceec8146b243e5dbbbd6b02170d9dd4 203 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 1 26 1.6E-9 T 29-03-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Y880_RS03265 5ceec8146b243e5dbbbd6b02170d9dd4 203 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 33 203 6.1E-59 T 29-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Y880_RS03265 5ceec8146b243e5dbbbd6b02170d9dd4 203 PIRSF PIRSF015617 6 203 4.3E-71 T 29-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Y880_RS03265 5ceec8146b243e5dbbbd6b02170d9dd4 203 Gene3D G3DSA:3.40.50.300 11 203 6.8E-70 T 29-03-2018 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 PRINTS PR00116 Arginase signature 122 137 5.9E-11 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 PRINTS PR00116 Arginase signature 235 264 5.9E-11 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 ProSitePatterns PS01053 Arginase family signature. 238 259 - T 29-03-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 PIRSF PIRSF036979 14 314 1.4E-91 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 SUPERFAMILY SSF52768 15 311 4.32E-95 T 29-03-2018 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 TIGRFAM TIGR01230 agmatinase: agmatinase 39 308 3.2E-54 T 29-03-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 Pfam PF00491 Arginase family 36 307 1.3E-86 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS28065 1a7f4cef68e8ae96bbce38e82797c3e5 318 Gene3D G3DSA:3.40.800.10 3 318 7.2E-96 T 29-03-2018 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 SUPERFAMILY SSF53850 96 301 1.52E-35 T 29-03-2018 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 Pfam PF03466 LysR substrate binding domain 94 300 1.9E-37 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27765 b10d80874186463937a8f81efa868a31 313 Gene3D G3DSA:3.40.190.10 183 269 2.4E-16 T 29-03-2018 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 4.6E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 Gene3D G3DSA:3.40.190.10 93 182 6.8E-20 T 29-03-2018 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27765 b10d80874186463937a8f81efa868a31 313 Gene3D G3DSA:1.10.10.10 2 89 3.6E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27765 b10d80874186463937a8f81efa868a31 313 SUPERFAMILY SSF46785 5 116 5.99E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 SUPERFAMILY SSF53448 565 782 2.15E-35 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 Gene3D G3DSA:3.90.550.10 538 925 1.4E-30 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 Pfam PF13641 Glycosyltransferase like family 2 563 794 3.3E-17 T 29-03-2018 Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 Gene3D G3DSA:3.40.50.2000 990 1149 3.1E-9 T 29-03-2018 Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 Pfam PF00535 Glycosyl transferase family 2 8 123 1.9E-20 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 SUPERFAMILY SSF53756 882 1149 1.33E-8 T 29-03-2018 Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 Gene3D G3DSA:3.90.550.10 2 273 1.5E-31 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 Gene3D G3DSA:3.90.550.10 296 502 4.7E-5 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 SUPERFAMILY SSF53448 6 230 9.72E-40 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02310 9d73e2f8b127d3811958c58d5703b9d3 1168 SUPERFAMILY SSF53448 327 498 4.66E-10 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS25045 68b45b96820f77202bbf69e4653f95fb 141 Gene3D G3DSA:2.60.120.460 1 139 2.9E-54 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 Y880_RS25045 68b45b96820f77202bbf69e4653f95fb 141 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 139 1.5E-38 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 Y880_RS25045 68b45b96820f77202bbf69e4653f95fb 141 PIRSF PIRSF004681 1 139 8.5E-43 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 Y880_RS25045 68b45b96820f77202bbf69e4653f95fb 141 Pfam PF01894 Uncharacterised protein family UPF0047 19 134 7.0E-35 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 Y880_RS25045 68b45b96820f77202bbf69e4653f95fb 141 SUPERFAMILY SSF111038 1 139 8.5E-45 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 Gene3D G3DSA:1.10.10.60 199 241 2.7E-11 T 29-03-2018 Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 Gene3D G3DSA:1.10.10.60 242 299 2.4E-12 T 29-03-2018 Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 SUPERFAMILY SSF46689 191 242 7.44E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 SUPERFAMILY SSF52317 15 174 5.34E-33 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 Pfam PF12833 Helix-turn-helix domain 215 293 1.3E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 Gene3D G3DSA:3.40.50.880 3 198 8.8E-37 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 SMART SM00342 208 291 2.5E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 Pfam PF01965 DJ-1/PfpI family 18 151 3.7E-6 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 245 287 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS20485 0fa901025f4d4a4a1ddc20b564da1b31 299 SUPERFAMILY SSF46689 244 295 2.02E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS06200 1e7654f2fba477385067e6905122e522 253 Gene3D G3DSA:3.40.50.150 34 222 3.2E-13 T 29-03-2018 Y880_RS06200 1e7654f2fba477385067e6905122e522 253 SUPERFAMILY SSF53335 90 178 1.44E-14 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS06200 1e7654f2fba477385067e6905122e522 253 Pfam PF08241 Methyltransferase domain 82 131 1.8E-6 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.3E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.3E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.3E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 SUPERFAMILY SSF51735 12 250 3.23E-74 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 Gene3D G3DSA:3.40.50.720 3 251 7.6E-67 T 29-03-2018 Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 249 1.4E-54 T 29-03-2018 Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 9.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 9.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 9.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 9.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 9.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08340 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 9.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 159 315 4.9E-17 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 SMART SM00859 3 142 8.1E-64 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 142 3.8E-38 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 Gene3D G3DSA:3.40.50.720 1 159 3.7E-48 T 29-03-2018 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 145 161 - T 29-03-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 344 1.4E-132 T 29-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 SUPERFAMILY SSF55347 150 312 1.83E-51 T 29-03-2018 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 SUPERFAMILY SSF51735 2 172 1.74E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 Gene3D G3DSA:3.30.360.10 160 312 3.1E-57 T 29-03-2018 Y880_RS30010 dd4c6b7cc7c5bb7cd8cd334370eafcf6 344 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 338 42.952 T 29-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Gene3D G3DSA:1.25.40.10 184 265 1.1E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Gene3D G3DSA:1.25.40.10 474 527 2.2E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SUPERFAMILY SSF48452 126 226 7.59E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Gene3D G3DSA:1.25.40.10 48 182 0.0082 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Gene3D G3DSA:1.25.40.10 370 473 2.6E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Gene3D G3DSA:1.25.40.10 266 363 5.8E-17 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Pfam PF13432 Tetratricopeptide repeat 319 362 0.0027 T 29-03-2018 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Pfam PF13432 Tetratricopeptide repeat 516 574 6.9E-8 T 29-03-2018 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Pfam PF13432 Tetratricopeptide repeat 445 508 3.9E-5 T 29-03-2018 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Pfam PF14559 Tetratricopeptide repeat 248 305 5.6E-11 T 29-03-2018 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SUPERFAMILY SSF48452 234 573 8.65E-27 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 Gene3D G3DSA:1.25.40.10 528 588 2.7E-10 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SMART SM00028 235 268 96.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SMART SM00028 508 541 0.055 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SMART SM00028 439 472 170.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SMART SM00028 405 438 120.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SMART SM00028 303 336 170.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SMART SM00028 370 403 160.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS21705 4ef339896ce60816aabcb603174d7c9a 590 SMART SM00028 473 507 120.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS06105 a587958a2d38bd970f8b32565790eae2 612 Gene3D G3DSA:3.40.710.10 36 388 2.0E-70 T 29-03-2018 Y880_RS06105 a587958a2d38bd970f8b32565790eae2 612 SUPERFAMILY SSF56601 34 383 1.05E-70 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS06105 a587958a2d38bd970f8b32565790eae2 612 Pfam PF00144 Beta-lactamase 43 380 1.2E-60 T 29-03-2018 IPR001466 Beta-lactamase-related Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 164 235 2.7E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 Gene3D G3DSA:1.10.10.10 130 239 1.8E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 SUPERFAMILY SSF52172 7 178 1.99E-39 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 SMART SM00862 158 235 5.8E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 SUPERFAMILY SSF46894 154 235 1.22E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 SMART SM00448 9 119 1.1E-41 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 Pfam PF00072 Response regulator receiver domain 12 119 1.4E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS01440 f226aca5d3d7b58a12037431d6e649d3 239 Gene3D G3DSA:3.40.50.2300 3 129 1.3E-34 T 29-03-2018 Y880_RS02890 a86a44e66dd65ef524b13a551a6aff75 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.1E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02890 a86a44e66dd65ef524b13a551a6aff75 304 SUPERFAMILY SSF53850 90 301 2.9E-47 T 29-03-2018 Y880_RS02890 a86a44e66dd65ef524b13a551a6aff75 304 Gene3D G3DSA:1.10.10.10 1 85 1.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02890 a86a44e66dd65ef524b13a551a6aff75 304 Gene3D G3DSA:3.40.190.10 175 264 1.1E-28 T 29-03-2018 Y880_RS02890 a86a44e66dd65ef524b13a551a6aff75 304 Gene3D G3DSA:3.40.190.10 91 174 4.5E-11 T 29-03-2018 Y880_RS02890 a86a44e66dd65ef524b13a551a6aff75 304 Pfam PF03466 LysR substrate binding domain 91 296 4.0E-49 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS02890 a86a44e66dd65ef524b13a551a6aff75 304 SUPERFAMILY SSF46785 2 112 9.41E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04065 f30a20ed74adc32badd07bceb7aa2a39 503 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 20 448 1.3E-46 T 29-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 Y880_RS04065 f30a20ed74adc32badd07bceb7aa2a39 503 PIRSF PIRSF002744 1 483 2.5E-96 T 29-03-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 205 1.5E-28 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 Gene3D G3DSA:3.40.1010.10 3 114 3.2E-38 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 PIRSF PIRSF005917 1 281 2.4E-101 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 Gene3D G3DSA:3.30.950.10 115 234 1.1E-39 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 5 226 36.409 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 SUPERFAMILY SSF53790 4 224 9.16E-80 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 83 94 - T 29-03-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20415 d7b1aa7046ecf1439b2e118619388a3b 282 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 6 277 7.6E-91 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS06835 898655ff560d1b3f0f641bdc8f0e668a 126 Pfam PF14263 Domain of unknown function (DUF4354) 1 123 1.9E-48 T 29-03-2018 IPR025581 Protein of unknown function DUF4354 Y880_RS06835 898655ff560d1b3f0f641bdc8f0e668a 126 Gene3D G3DSA:2.60.40.1240 32 119 6.8E-5 T 29-03-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 SUPERFAMILY SSF101801 247 322 3.14E-14 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 PIRSF PIRSF002888 3 323 1.8E-91 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 Gene3D G3DSA:2.30.330.10 237 323 4.7E-16 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 Pfam PF02154 Flagellar motor switch protein FliM 38 229 4.3E-75 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 5 319 2.3E-109 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 Gene3D G3DSA:3.40.1550.10 46 234 6.0E-43 T 29-03-2018 IPR028976 CheC-like domain Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 3.4E-21 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 3.4E-21 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 3.4E-21 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 3.4E-21 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 251 319 1.4E-16 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 SUPERFAMILY SSF103039 55 230 1.28E-19 T 29-03-2018 IPR028976 CheC-like domain Y880_RS04185 cd00c6d6044b70d67ce0592151621b7f 323 SUPERFAMILY SSF103039 6 15 1.28E-19 T 29-03-2018 IPR028976 CheC-like domain Y880_RS18000 c66535535e1005efa870161cf3f674c3 167 Pfam PF01936 NYN domain 11 159 5.0E-35 T 29-03-2018 IPR021139 NYN domain, limkain-b1-type Y880_RS18000 c66535535e1005efa870161cf3f674c3 167 Gene3D G3DSA:3.40.50.1010 2 165 5.2E-33 T 29-03-2018 IPR029060 PIN domain-like Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 187 207 2.5E-21 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 2.5E-21 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 2.5E-21 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 2.5E-21 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 SUPERFAMILY SSF58104 232 541 1.14E-70 T 29-03-2018 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 SMART SM00304 211 264 5.9E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 Gene3D G3DSA:1.10.287.950 305 501 1.8E-48 T 29-03-2018 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 Gene3D G3DSA:1.10.287.950 502 540 0.23 T 29-03-2018 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 Gene3D G3DSA:1.10.287.950 80 304 4.7E-4 T 29-03-2018 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 184 3.4E-9 T 29-03-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 Pfam PF00672 HAMP domain 212 258 2.3E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 505 6.5E-41 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS23090 e5daa580842c33fdc68472c3f615ca95 541 SMART SM00283 279 540 3.0E-70 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 17 143 3.0E-69 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 147 75.469 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 SUPERFAMILY SSF52304 3 145 2.75E-63 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 Pfam PF01220 Dehydroquinase class II 4 140 1.6E-60 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 Gene3D G3DSA:3.40.50.9100 1 147 3.4E-67 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 PIRSF PIRSF001399 1 146 1.4E-58 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 143 8.4E-62 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22745 fc0d747fc3254ba82f4319ee979026f0 147 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 29-03-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS17445 135430772ea03bf043700d3ca196c144 180 SUPERFAMILY SSF52499 2 178 3.14E-46 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS17445 135430772ea03bf043700d3ca196c144 180 Gene3D G3DSA:3.40.50.850 2 179 5.0E-36 T 29-03-2018 Y880_RS17445 135430772ea03bf043700d3ca196c144 180 Pfam PF00857 Isochorismatase family 8 156 7.0E-26 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 SUPERFAMILY SSF53613 4 295 5.77E-64 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 Gene3D G3DSA:2.20.150.10 11 44 5.7E-13 T 29-03-2018 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 307 6.5E-104 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 Gene3D G3DSA:3.40.1190.20 45 310 6.8E-43 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 PIRSF PIRSF000535 1 310 3.2E-83 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 Pfam PF00294 pfkB family carbohydrate kinase 17 289 3.1E-42 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB Y880_RS15925 dbf384865a44c32a9d48130f4599e2f6 314 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 4 307 1.7E-104 T 29-03-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 Gene3D G3DSA:3.40.50.1100 42 142 5.0E-37 T 29-03-2018 Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 Pfam PF00571 CBS domain 344 387 1.0E-9 T 29-03-2018 IPR000644 CBS domain Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 11 303 7.6E-65 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 SUPERFAMILY SSF53686 6 321 1.96E-92 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 Gene3D G3DSA:3.40.50.1100 143 324 1.2E-48 T 29-03-2018 Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 SMART SM00116 344 391 1.8E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 SUPERFAMILY SSF54631 334 453 8.09E-18 T 29-03-2018 Y880_RS28655 0e1ffc4aaa9260684e910748df737a7b 457 Gene3D G3DSA:3.10.580.10 326 456 9.9E-19 T 29-03-2018 Y880_RS26305 4cc1b16130be2fc866271694692da502 464 Gene3D G3DSA:3.40.640.10 177 340 5.3E-34 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS26305 4cc1b16130be2fc866271694692da502 464 Gene3D G3DSA:3.90.1150.10 16 176 3.6E-23 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS26305 4cc1b16130be2fc866271694692da502 464 Pfam PF00202 Aminotransferase class-III 50 429 2.3E-41 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS26305 4cc1b16130be2fc866271694692da502 464 SUPERFAMILY SSF53383 45 455 2.28E-82 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS26305 4cc1b16130be2fc866271694692da502 464 Gene3D G3DSA:3.90.1150.10 341 457 0.0029 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS18270 fdeea7d54955d5362d7e550a9b615e08 118 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 1.3E-27 T 29-03-2018 Y880_RS18270 fdeea7d54955d5362d7e550a9b615e08 118 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 6.6E-39 T 29-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Y880_RS18270 fdeea7d54955d5362d7e550a9b615e08 118 SUPERFAMILY SSF81301 1 111 8.66E-41 T 29-03-2018 Y880_RS18270 fdeea7d54955d5362d7e550a9b615e08 118 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 26.368 T 29-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Y880_RS18270 fdeea7d54955d5362d7e550a9b615e08 118 Gene3D G3DSA:3.30.460.10 1 118 2.0E-39 T 29-03-2018 Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 Pfam PF00005 ABC transporter 22 191 3.9E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 Pfam PF00005 ABC transporter 340 473 1.1E-22 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 SUPERFAMILY SSF52540 302 530 3.28E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 Gene3D G3DSA:3.40.50.300 12 289 3.0E-52 T 29-03-2018 Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 Pfam PF12848 ABC transporter 230 304 6.5E-11 T 29-03-2018 IPR032781 ABC-transporter extension domain Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 Gene3D G3DSA:3.40.50.300 290 552 1.7E-57 T 29-03-2018 Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 4.2E-296 T 29-03-2018 IPR022374 ABC transporter, ATP-binding protein, ChvD Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 SUPERFAMILY SSF52540 13 244 4.43E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 SMART SM00382 348 522 2.3E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21315 d7a1f241d103e201ff0797d0dbd7d80b 554 SMART SM00382 31 240 6.6E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS05130 36f2ef9c51fda26a287427823f8395d3 145 SUPERFAMILY SSF54637 13 139 8.13E-31 T 29-03-2018 IPR029069 HotDog domain Y880_RS05130 36f2ef9c51fda26a287427823f8395d3 145 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 23 136 9.0E-36 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS05130 36f2ef9c51fda26a287427823f8395d3 145 Gene3D G3DSA:3.10.129.10 1 144 3.5E-27 T 29-03-2018 Y880_RS05130 36f2ef9c51fda26a287427823f8395d3 145 Pfam PF03061 Thioesterase superfamily 51 126 6.2E-14 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS20255 d3706950da4f79f18b179206aa6b1a6b 127 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 30 109 2.2E-20 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS20255 d3706950da4f79f18b179206aa6b1a6b 127 Gene3D G3DSA:1.10.10.10 23 127 1.1E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20255 d3706950da4f79f18b179206aa6b1a6b 127 SUPERFAMILY SSF46767 29 110 3.92E-21 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS10100 f9b0505383430c75ec82aec79a344fe2 304 SUPERFAMILY SSF53850 91 297 3.26E-47 T 29-03-2018 Y880_RS10100 f9b0505383430c75ec82aec79a344fe2 304 Gene3D G3DSA:3.40.190.10 180 267 3.4E-29 T 29-03-2018 Y880_RS10100 f9b0505383430c75ec82aec79a344fe2 304 Gene3D G3DSA:1.10.10.10 6 92 2.9E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10100 f9b0505383430c75ec82aec79a344fe2 304 Gene3D G3DSA:3.40.190.10 93 179 9.3E-15 T 29-03-2018 Y880_RS10100 f9b0505383430c75ec82aec79a344fe2 304 Pfam PF03466 LysR substrate binding domain 90 295 5.5E-48 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS10100 f9b0505383430c75ec82aec79a344fe2 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.1E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10100 f9b0505383430c75ec82aec79a344fe2 304 SUPERFAMILY SSF46785 7 114 2.09E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 29-03-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 Gene3D G3DSA:3.30.360.10 145 351 4.9E-59 T 29-03-2018 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 354 4.4E-63 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 Gene3D G3DSA:3.40.50.720 1 144 1.5E-20 T 29-03-2018 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 368 4.3E-197 T 29-03-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 SMART SM00859 3 122 6.3E-28 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.434 T 29-03-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 PIRSF PIRSF000148 1 370 2.2E-64 T 29-03-2018 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 SUPERFAMILY SSF51735 1 147 1.16E-54 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 SUPERFAMILY SSF55347 134 355 3.35E-76 T 29-03-2018 Y880_RS13610 a8be0c31547178063df844cb7d4d0666 370 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 122 8.9E-25 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 457 1.0E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 1.0E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 1.0E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 1.0E-19 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 Pfam PF00512 His Kinase A (phospho-acceptor) domain 210 309 9.6E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 Gene3D G3DSA:1.10.287.130 191 306 5.2E-10 T 29-03-2018 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 Gene3D G3DSA:3.30.565.10 309 460 2.6E-41 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 SUPERFAMILY SSF47384 278 309 1.92E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 SUPERFAMILY SSF47384 203 243 1.92E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 Gene3D G3DSA:3.40.50.2300 19 190 1.0E-5 T 29-03-2018 Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 SUPERFAMILY SSF55874 300 460 4.98E-44 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 459 8.9E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10240 0d38176c521fe8e5a07446827549df3a 470 SMART SM00387 351 460 1.3E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20135 b1890bbc84f5eefd09bb1ac704f70578 190 Pfam PF04011 LemA family 9 185 5.1E-57 T 29-03-2018 IPR007156 LemA Y880_RS20135 b1890bbc84f5eefd09bb1ac704f70578 190 SUPERFAMILY SSF140478 26 177 3.01E-45 T 29-03-2018 IPR023353 LemA-like domain Y880_RS20135 b1890bbc84f5eefd09bb1ac704f70578 190 Gene3D G3DSA:1.20.1440.20 14 186 1.4E-47 T 29-03-2018 Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 67 91 1.4 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 217 251 2.2E-4 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 200 216 0.02 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 129 164 1.8E-7 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 94 128 9.1E-10 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 SMART SM00671 165 216 91.0 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 SMART SM00671 93 128 2.9E-10 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 SMART SM00671 61 92 20.0 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 SMART SM00671 217 252 2.8E-4 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 SMART SM00671 129 164 1.7E-7 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS28450 54197f24ddca5007244926346e3a4809 328 SUPERFAMILY SSF81901 52 177 2.49E-30 T 29-03-2018 Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Gene3D G3DSA:2.60.40.1180 125 194 9.7E-15 T 29-03-2018 Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Gene3D G3DSA:2.60.40.1180 29 124 5.6E-13 T 29-03-2018 Y880_RS28450 54197f24ddca5007244926346e3a4809 328 Gene3D G3DSA:2.60.40.1180 195 270 3.8E-10 T 29-03-2018 Y880_RS28450 54197f24ddca5007244926346e3a4809 328 SUPERFAMILY SSF81901 196 259 1.44E-11 T 29-03-2018 Y880_RS19235 2bbff6f1c38177503c5cc3f303810e83 247 PIRSF PIRSF039085 1 241 1.1E-104 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y880_RS19235 2bbff6f1c38177503c5cc3f303810e83 247 SUPERFAMILY SSF52540 1 235 7.34E-80 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19235 2bbff6f1c38177503c5cc3f303810e83 247 SMART SM00382 26 213 1.0E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS19235 2bbff6f1c38177503c5cc3f303810e83 247 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS19235 2bbff6f1c38177503c5cc3f303810e83 247 Pfam PF00005 ABC transporter 18 165 1.9E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS19235 2bbff6f1c38177503c5cc3f303810e83 247 Gene3D G3DSA:3.40.50.300 1 245 1.7E-72 T 29-03-2018 Y880_RS26225 a79baeb76eea8cc705e481f19a88fdd1 443 Pfam PF00120 Glutamine synthetase, catalytic domain 106 426 1.9E-88 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS26225 a79baeb76eea8cc705e481f19a88fdd1 443 SUPERFAMILY SSF55931 105 440 1.18E-80 T 29-03-2018 Y880_RS26225 a79baeb76eea8cc705e481f19a88fdd1 443 SMART SM01230 105 353 2.0E-67 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS26225 a79baeb76eea8cc705e481f19a88fdd1 443 Gene3D G3DSA:3.30.590.10 102 443 1.3E-89 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y880_RS26225 a79baeb76eea8cc705e481f19a88fdd1 443 Gene3D G3DSA:3.10.20.70 1 101 1.6E-14 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS26225 a79baeb76eea8cc705e481f19a88fdd1 443 Pfam PF16952 Glutamine synthetase N-terminal domain 3 104 1.3E-44 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS29900 192e966caec40411e901c3753b2efa71 231 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 7 226 3.0E-76 T 29-03-2018 IPR006487 Bacteriophage lambda, GpL, minor tail Y880_RS29900 192e966caec40411e901c3753b2efa71 231 Pfam PF05100 Phage minor tail protein L 24 228 2.6E-96 T 29-03-2018 IPR006487 Bacteriophage lambda, GpL, minor tail Y880_RS29165 9f643df2e27b14efc6f9c79338ded51d 292 SUPERFAMILY SSF50891 92 248 3.22E-26 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS29165 9f643df2e27b14efc6f9c79338ded51d 292 Gene3D G3DSA:3.30.1360.40 1 86 2.5E-15 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 Y880_RS29165 9f643df2e27b14efc6f9c79338ded51d 292 Gene3D G3DSA:2.40.100.10 90 250 1.4E-38 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS29165 9f643df2e27b14efc6f9c79338ded51d 292 SUPERFAMILY SSF160467 6 96 3.66E-14 T 29-03-2018 Y880_RS29165 9f643df2e27b14efc6f9c79338ded51d 292 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 220 3.5E-48 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y880_RS29165 9f643df2e27b14efc6f9c79338ded51d 292 SMART SM00796 5 226 3.2E-73 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y880_RS23115 e1ef486465ae82017fe70a44f2dab472 275 TIGRFAM TIGR00552 nadE: NAD+ synthetase 27 273 1.0E-67 T 29-03-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 Y880_RS23115 e1ef486465ae82017fe70a44f2dab472 275 Gene3D G3DSA:3.40.50.620 3 275 3.1E-60 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23115 e1ef486465ae82017fe70a44f2dab472 275 SUPERFAMILY SSF52402 20 272 3.45E-77 T 29-03-2018 Y880_RS23115 e1ef486465ae82017fe70a44f2dab472 275 Pfam PF02540 NAD synthase 28 272 8.4E-65 T 29-03-2018 IPR022310 NAD/GMP synthase Y880_RS23115 e1ef486465ae82017fe70a44f2dab472 275 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 22 275 32.708 T 29-03-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 Gene3D G3DSA:3.40.50.620 1 158 1.8E-38 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 SUPERFAMILY SSF52374 1 156 4.29E-47 T 29-03-2018 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 2.6E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 2.6E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 2.6E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 2.6E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 2.6E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 63 4.2E-20 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 Pfam PF01467 Cytidylyltransferase-like 5 133 7.9E-24 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 36.504 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 94 1.0E-5 T 29-03-2018 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 156 1.0E-59 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y880_RS28465 78e6ca3073c342d1ff05d89bf42d4dc8 159 SMART SM00764 12 153 0.0096 T 29-03-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 Y880_RS23580 35889c9f07d58fcaf08af90785460181 244 SUPERFAMILY SSF56112 34 181 2.32E-17 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS23580 35889c9f07d58fcaf08af90785460181 244 Gene3D G3DSA:3.90.1200.10 129 242 1.9E-7 T 29-03-2018 Y880_RS23580 35889c9f07d58fcaf08af90785460181 244 Gene3D G3DSA:3.30.200.20 11 104 2.8E-4 T 29-03-2018 Y880_RS23580 35889c9f07d58fcaf08af90785460181 244 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 42 211 9.1E-18 T 29-03-2018 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 Reactome: R-HSA-6782315|Reactome: R-HSA-6804756 Y880_RS23580 35889c9f07d58fcaf08af90785460181 244 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 154 166 - T 29-03-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 9 653 0.0 T 29-03-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 63 509 6.5E-136 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 Gene3D G3DSA:1.20.210.10 50 568 2.0E-181 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 SUPERFAMILY SSF81442 50 567 7.19E-175 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 287 341 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 Gene3D G3DSA:1.10.287.70 580 646 1.3E-8 T 29-03-2018 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 54 79 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 234 253 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 468 489 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 331 346 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 285 306 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 390 408 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 205 223 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 104 127 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 131 155 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 355 376 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 418 437 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS11970 3202692cfce0b8c0ac4a8fde59c55b73 659 PRINTS PR01165 Cytochrome c oxidase subunit I signature 173 185 6.9E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS18690 7420fb900248378c2306794b899100b9 253 SUPERFAMILY SSF51735 5 245 1.75E-77 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18690 7420fb900248378c2306794b899100b9 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS18690 7420fb900248378c2306794b899100b9 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 187 5.0E-5 T 29-03-2018 Y880_RS18690 7420fb900248378c2306794b899100b9 253 Gene3D G3DSA:3.40.50.720 42 250 3.1E-63 T 29-03-2018 Y880_RS18690 7420fb900248378c2306794b899100b9 253 Gene3D G3DSA:3.40.50.720 1 41 9.2E-11 T 29-03-2018 Y880_RS18690 7420fb900248378c2306794b899100b9 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 243 7.5E-62 T 29-03-2018 Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.4E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 4.4E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.4E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18690 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 Gene3D G3DSA:1.10.10.10 1 85 1.1E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 Pfam PF03466 LysR substrate binding domain 90 293 5.1E-26 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.1E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 SUPERFAMILY SSF46785 5 88 1.25E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 Gene3D G3DSA:3.40.190.10 91 181 1.8E-9 T 29-03-2018 Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 9.0E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 9.0E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 9.0E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 Gene3D G3DSA:3.40.190.10 182 263 4.5E-9 T 29-03-2018 Y880_RS29085 9c1a9f93fd9778c7d294e30c1cb186eb 316 SUPERFAMILY SSF53850 91 297 1.59E-25 T 29-03-2018 Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 Gene3D G3DSA:3.30.70.20 46 106 8.1E-9 T 29-03-2018 Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.4E-18 T 29-03-2018 IPR000813 7Fe ferredoxin GO:0009055 Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.4E-18 T 29-03-2018 IPR000813 7Fe ferredoxin GO:0009055 Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.4E-18 T 29-03-2018 IPR000813 7Fe ferredoxin GO:0009055 Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 Gene3D G3DSA:3.30.70.20 18 45 2.8E-10 T 29-03-2018 Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 9.1E-24 T 29-03-2018 IPR022569 Ferredoxin, C-terminal Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 Pfam PF00037 4Fe-4S binding domain 34 55 4.7E-6 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 Gene3D G3DSA:3.30.70.20 2 17 0.08 T 29-03-2018 Y880_RS16260 44cb5f54294b451693acde72a0a29904 107 SUPERFAMILY SSF54862 3 104 1.2E-24 T 29-03-2018 Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 5.6E-13 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 1.3E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 1.3E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 Gene3D G3DSA:1.10.10.60 2 76 2.0E-18 T 29-03-2018 Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 Pfam PF08362 YcdC-like protein, C-terminal region 75 216 1.7E-53 T 29-03-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 SUPERFAMILY SSF48498 92 216 2.19E-43 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 SUPERFAMILY SSF46689 16 95 6.67E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS27460 fde57cadd89d3e454ad76cbdc711b4d7 221 Gene3D G3DSA:1.10.357.10 77 216 1.5E-25 T 29-03-2018 Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 Gene3D G3DSA:1.10.1660.10 1 57 1.2E-19 T 29-03-2018 Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 SUPERFAMILY SSF55136 120 269 1.05E-32 T 29-03-2018 Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 SUPERFAMILY SSF46955 2 108 1.31E-25 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 Pfam PF13411 MerR HTH family regulatory protein 3 68 9.3E-16 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 SMART SM00871 120 270 1.4E-33 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 Pfam PF14526 Integron-associated effector binding protein 123 269 1.4E-37 T 29-03-2018 IPR029441 Integron-associated effector binding protein Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 SMART SM00422 2 72 4.8E-20 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 Gene3D G3DSA:3.20.80.10 118 269 2.6E-40 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain Y880_RS22905 c03b58cfba07ef486f9beed267f57291 270 Gene3D G3DSA:1.10.1660.10 58 117 3.3E-4 T 29-03-2018 Y880_RS28295 6b6ff7c984edea64a1ee43e09081cef4 223 Gene3D G3DSA:3.40.50.1360 1 141 1.0E-39 T 29-03-2018 Y880_RS28295 6b6ff7c984edea64a1ee43e09081cef4 223 Gene3D G3DSA:3.30.70.260 142 200 7.5E-24 T 29-03-2018 Y880_RS28295 6b6ff7c984edea64a1ee43e09081cef4 223 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 219 8.2E-65 T 29-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS28295 6b6ff7c984edea64a1ee43e09081cef4 223 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 53 217 1.0E-57 T 29-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS28295 6b6ff7c984edea64a1ee43e09081cef4 223 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 221 33.609 T 29-03-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS28295 6b6ff7c984edea64a1ee43e09081cef4 223 SUPERFAMILY SSF75445 131 202 7.98E-24 T 29-03-2018 Y880_RS28295 6b6ff7c984edea64a1ee43e09081cef4 223 SUPERFAMILY SSF100950 1 150 2.7E-42 T 29-03-2018 Y880_RS10460 83d6e95eeb2a848fdff476762e3c60db 327 Pfam PF00591 Glycosyl transferase family, a/b domain 105 244 4.2E-5 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS10460 83d6e95eeb2a848fdff476762e3c60db 327 SUPERFAMILY SSF47648 18 78 7.06E-16 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS10460 83d6e95eeb2a848fdff476762e3c60db 327 SUPERFAMILY SSF52418 81 324 5.76E-59 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS10460 83d6e95eeb2a848fdff476762e3c60db 327 Pfam PF02885 Glycosyl transferase family, helical bundle domain 22 76 3.4E-17 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS10460 83d6e95eeb2a848fdff476762e3c60db 327 Gene3D G3DSA:3.40.1030.10 83 324 1.2E-43 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y880_RS10460 83d6e95eeb2a848fdff476762e3c60db 327 Gene3D G3DSA:1.20.970.10 12 79 5.8E-19 T 29-03-2018 Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 PRINTS PR00969 Pili chaperone signature 123 138 1.7E-26 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 PRINTS PR00969 Pili chaperone signature 72 93 1.7E-26 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 PRINTS PR00969 Pili chaperone signature 26 35 1.7E-26 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 PRINTS PR00969 Pili chaperone signature 100 117 1.7E-26 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 PRINTS PR00969 Pili chaperone signature 162 177 1.7E-26 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 229 8.7E-17 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 Gene3D G3DSA:2.60.40.10 144 237 8.6E-24 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 Gene3D G3DSA:2.60.40.10 25 142 1.4E-35 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 SUPERFAMILY SSF49584 135 232 1.83E-16 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 SUPERFAMILY SSF49354 20 141 7.33E-40 T 29-03-2018 IPR008962 PapD-like Y880_RS01740 7f60e816272a4521ee3c3429b5dd5b89 237 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 25 141 1.6E-40 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y880_RS04290 42e3911d656a96874d25cf873e6b0112 159 SUPERFAMILY SSF50341 11 154 2.88E-42 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS04290 42e3911d656a96874d25cf873e6b0112 159 Gene3D G3DSA:2.30.30.40 96 142 1.5E-18 T 29-03-2018 Y880_RS04290 42e3911d656a96874d25cf873e6b0112 159 Pfam PF01584 CheW-like domain 15 151 7.2E-40 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS04290 42e3911d656a96874d25cf873e6b0112 159 Gene3D G3DSA:2.40.50.180 32 95 2.2E-23 T 29-03-2018 Y880_RS04290 42e3911d656a96874d25cf873e6b0112 159 SMART SM00260 11 148 5.6E-53 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82693 676 725 4.97E-27 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82693 812 861 4.97E-27 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82714 185 273 3.27E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82693 569 675 9.94E-25 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Pfam PF00873 AcrB/AcrD/AcrF family 4 1031 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Gene3D G3DSA:3.30.70.1430 573 672 2.2E-17 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1038 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82693 137 184 5.75E-25 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82693 276 332 5.75E-25 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82866 298 499 6.67E-51 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82714 726 811 4.71E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82866 835 1030 3.4E-43 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 625 639 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.7E-84 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Gene3D G3DSA:1.20.1640.10 850 1041 3.0E-36 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Gene3D G3DSA:3.30.70.1320 771 849 2.3E-6 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Gene3D G3DSA:3.30.70.1430 40 142 1.5E-27 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Gene3D G3DSA:1.20.1640.10 279 500 8.5E-50 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 SUPERFAMILY SSF82693 40 134 1.15E-27 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Gene3D G3DSA:3.30.70.1440 676 770 8.9E-21 T 29-03-2018 Y880_RS15725 1e9294264b2c3dcced77f965be04b7ce 1053 Gene3D G3DSA:3.30.2090.10 183 277 5.4E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 Gene3D G3DSA:3.40.50.1390 2 126 6.9E-33 T 29-03-2018 Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 Pfam PF00239 Resolvase, N terminal domain 5 159 5.8E-29 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 Gene3D G3DSA:1.10.10.60 149 199 5.7E-7 T 29-03-2018 Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 SUPERFAMILY SSF53041 1 159 5.49E-31 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 ProSitePatterns PS00398 Site-specific recombinases signature 2. 62 74 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 Gene3D G3DSA:1.20.5.40 127 148 7.1E-5 T 29-03-2018 Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Y880_RS00720 9d6f0ccfa2d68e397026e9e6f78ad9ba 203 SMART SM00857 3 159 1.1E-43 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y880_RS13765 11875bb13a19d8b1bb10d3fd78b5026c 320 SUPERFAMILY SSF51735 4 319 1.6E-70 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13765 11875bb13a19d8b1bb10d3fd78b5026c 320 Gene3D G3DSA:3.40.50.720 2 320 6.1E-59 T 29-03-2018 Y880_RS13765 11875bb13a19d8b1bb10d3fd78b5026c 320 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 227 6.4E-35 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 132 259 5.0E-8 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 SMART SM01009 9 126 8.4E-49 T 29-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 Gene3D G3DSA:1.10.150.20 230 259 0.17 T 29-03-2018 Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 SUPERFAMILY SSF48150 117 293 1.47E-45 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 Pfam PF06029 AlkA N-terminal domain 9 126 9.0E-32 T 29-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 Gene3D G3DSA:3.30.310.20 9 126 1.4E-30 T 29-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 Gene3D G3DSA:1.10.1670.10 260 296 1.2E-12 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 SUPERFAMILY SSF55945 9 107 1.88E-27 T 29-03-2018 Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 SMART SM00478 136 294 3.6E-15 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y880_RS05495 b86d19132f860ac4158314496ce9000c 297 Gene3D G3DSA:1.10.340.30 127 229 6.3E-26 T 29-03-2018 Y880_RS13180 0a059a8b01f70f0f46c94f73e172a924 185 SUPERFAMILY SSF46689 3 76 3.44E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS13180 0a059a8b01f70f0f46c94f73e172a924 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 2.4E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS13180 0a059a8b01f70f0f46c94f73e172a924 185 Gene3D G3DSA:1.10.10.60 2 52 4.3E-18 T 29-03-2018 Y880_RS13180 0a059a8b01f70f0f46c94f73e172a924 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 8.1E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS13180 0a059a8b01f70f0f46c94f73e172a924 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 8.1E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS13180 0a059a8b01f70f0f46c94f73e172a924 185 SUPERFAMILY SSF48498 76 180 1.09E-14 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS13180 0a059a8b01f70f0f46c94f73e172a924 185 Gene3D G3DSA:1.10.357.10 53 181 3.5E-26 T 29-03-2018 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 Gene3D G3DSA:3.40.50.2300 5 133 5.5E-21 T 29-03-2018 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 Pfam PF00072 Response regulator receiver domain 8 122 2.1E-16 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 SUPERFAMILY SSF46894 140 208 5.44E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 SMART SM00421 149 206 6.6E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 Gene3D G3DSA:1.10.10.10 134 211 1.5E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.0E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.0E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.0E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 3.3E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 SUPERFAMILY SSF52172 5 141 4.27E-24 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS18645 002f0229a4ea720e500103244ef2db56 214 SMART SM00448 6 122 7.5E-14 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS09065 c2db0b79393d40ec0cb56059adf10b31 407 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 131 1.6E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09065 c2db0b79393d40ec0cb56059adf10b31 407 Gene3D G3DSA:3.50.50.60 1 138 8.6E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09065 c2db0b79393d40ec0cb56059adf10b31 407 SUPERFAMILY SSF51905 123 266 7.95E-20 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09065 c2db0b79393d40ec0cb56059adf10b31 407 Gene3D G3DSA:3.50.50.60 139 266 1.1E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09065 c2db0b79393d40ec0cb56059adf10b31 407 SUPERFAMILY SSF51905 11 152 2.51E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21800 60e9bb5ab50da094d9fd0bbf3c063af5 96 Pfam PF17525 Family of unknown function (DUF5447) 7 96 6.1E-47 T 29-03-2018 IPR035229 Protein of unknown function DUF5447 Y880_RS21800 60e9bb5ab50da094d9fd0bbf3c063af5 96 ProDom PD066019 ORF PA0718 PHAGE 1 96 2.0E-50 T 29-03-2018 IPR035229 Protein of unknown function DUF5447 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 Gene3D G3DSA:3.90.930.12 86 177 6.6E-40 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 Gene3D G3DSA:3.90.930.12 5 85 7.9E-26 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 7.3E-76 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 Pfam PF00347 Ribosomal protein L6 90 164 8.0E-19 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 Pfam PF00347 Ribosomal protein L6 12 82 2.5E-16 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 29-03-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 SUPERFAMILY SSF56053 1 82 1.12E-22 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 SUPERFAMILY SSF56053 83 177 3.17E-36 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 38.095 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 PIRSF PIRSF002162 1 177 2.6E-46 T 29-03-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.0E-34 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.0E-34 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y880_RS19500 498ad56a7234b8f83975d6c9b437e371 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.0E-34 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y880_RS03455 ece9cd86e014bd5ba0c7fb4532679c46 303 Gene3D G3DSA:3.40.190.10 88 173 1.9E-14 T 29-03-2018 Y880_RS03455 ece9cd86e014bd5ba0c7fb4532679c46 303 SUPERFAMILY SSF53850 89 299 1.71E-37 T 29-03-2018 Y880_RS03455 ece9cd86e014bd5ba0c7fb4532679c46 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.0E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03455 ece9cd86e014bd5ba0c7fb4532679c46 303 Pfam PF03466 LysR substrate binding domain 88 297 6.2E-45 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS03455 ece9cd86e014bd5ba0c7fb4532679c46 303 SUPERFAMILY SSF46785 3 87 1.14E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03455 ece9cd86e014bd5ba0c7fb4532679c46 303 Gene3D G3DSA:3.40.190.10 174 265 2.2E-15 T 29-03-2018 Y880_RS03455 ece9cd86e014bd5ba0c7fb4532679c46 303 Gene3D G3DSA:1.10.10.10 1 87 2.7E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 SUPERFAMILY SSF52172 3 125 2.85E-44 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 Gene3D G3DSA:3.40.50.2300 2 124 1.6E-37 T 29-03-2018 Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 SUPERFAMILY SSF46894 128 226 7.11E-29 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 SMART SM00862 151 225 6.4E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 Gene3D G3DSA:1.10.10.10 125 229 2.8E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.4E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 Pfam PF00072 Response regulator receiver domain 6 117 1.5E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 3 226 3.5E-109 T 29-03-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 Y880_RS25425 3b61ef0ae834381c5006c92e8233f6e5 229 SMART SM00448 4 117 8.3E-46 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 SMART SM01086 276 368 6.3E-18 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 Gene3D G3DSA:1.10.8.60 277 368 2.5E-14 T 29-03-2018 Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 SMART SM00382 88 237 2.5E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 SUPERFAMILY SSF52540 47 346 3.68E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 Pfam PF07724 AAA domain (Cdc48 subfamily) 87 269 2.0E-39 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 170 188 4.0E-29 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 92 110 4.0E-29 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 204 218 4.0E-29 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 137 155 4.0E-29 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 278 347 5.0E-18 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS14910 ad35633cbd21e21faae4173599293e94 371 Gene3D G3DSA:3.40.50.300 46 275 1.4E-38 T 29-03-2018 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 Gene3D G3DSA:1.10.287.70 150 198 8.5E-14 T 29-03-2018 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 SUPERFAMILY SSF81324 24 234 1.71E-51 T 29-03-2018 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 59 82 9.5E-30 T 29-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 85 105 9.5E-30 T 29-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 121 147 9.5E-30 T 29-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 150 173 9.5E-30 T 29-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 208 234 9.5E-30 T 29-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 17 45 9.5E-30 T 29-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 179 201 9.5E-30 T 29-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 Pfam PF00520 Ion transport protein 26 235 1.2E-28 T 29-03-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 Gene3D G3DSA:1.20.5.110 200 236 1.7E-13 T 29-03-2018 Y880_RS04455 adb6c61c484b4b96164dff917f5b1edd 283 Gene3D G3DSA:1.20.120.350 22 149 3.9E-25 T 29-03-2018 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 125 140 2.8E-25 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 42 58 2.8E-25 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 70 85 2.8E-25 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 152 171 2.8E-25 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 ProSitePatterns PS01071 grpE protein signature. 128 171 - T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 Gene3D G3DSA:3.90.20.20 13 116 6.8E-31 T 29-03-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 Hamap MF_01151 Protein GrpE [grpE]. 3 173 20.578 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 Pfam PF01025 GrpE 13 173 9.0E-52 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 SUPERFAMILY SSF58014 20 115 1.16E-26 T 29-03-2018 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 Gene3D G3DSA:2.30.22.10 118 179 6.8E-22 T 29-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Y880_RS22305 2d844661287b9f98def46a9d20975916 186 SUPERFAMILY SSF51064 118 174 4.97E-19 T 29-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Y880_RS07740 d9205ffc2c7959abd10bd794fd8ef048 237 Gene3D G3DSA:3.30.1360.40 1 87 1.5E-12 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 Y880_RS07740 d9205ffc2c7959abd10bd794fd8ef048 237 SMART SM00796 6 207 6.3E-84 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y880_RS07740 d9205ffc2c7959abd10bd794fd8ef048 237 Gene3D G3DSA:2.40.100.10 91 225 4.4E-43 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS07740 d9205ffc2c7959abd10bd794fd8ef048 237 SUPERFAMILY SSF50891 94 223 7.96E-41 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS07740 d9205ffc2c7959abd10bd794fd8ef048 237 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 7 206 3.2E-60 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y880_RS07740 d9205ffc2c7959abd10bd794fd8ef048 237 SUPERFAMILY SSF160467 7 97 7.32E-13 T 29-03-2018 Y880_RS26935 b4785111d1a01d49a2552e2696283807 221 Gene3D G3DSA:1.10.150.240 24 79 8.4E-20 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS26935 b4785111d1a01d49a2552e2696283807 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 189 1.6E-25 T 29-03-2018 IPR023214 HAD-like domain Y880_RS26935 b4785111d1a01d49a2552e2696283807 221 SUPERFAMILY SSF56784 7 220 2.76E-55 T 29-03-2018 IPR023214 HAD-like domain Y880_RS26935 b4785111d1a01d49a2552e2696283807 221 Gene3D G3DSA:3.40.50.1000 80 221 5.4E-29 T 29-03-2018 IPR023214 HAD-like domain Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 25 362 4.4E-114 T 29-03-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 PIRSF PIRSF001220 31 362 9.3E-86 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 Gene3D G3DSA:3.40.50.1170 32 244 9.7E-52 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 Gene3D G3DSA:3.40.50.40 248 361 1.4E-23 T 29-03-2018 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 39 47 - T 29-03-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 SMART SM00870 36 356 5.7E-126 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 PRINTS PR00139 Asparaginase/glutaminase family signature 117 135 2.3E-21 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 PRINTS PR00139 Asparaginase/glutaminase family signature 295 313 2.3E-21 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 PRINTS PR00139 Asparaginase/glutaminase family signature 37 48 2.3E-21 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 SUPERFAMILY SSF53774 34 361 5.1E-96 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 Pfam PF00710 Asparaginase, N-terminal 36 227 4.5E-54 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 PIRSF PIRSF500176 33 362 1.7E-77 T 29-03-2018 Y880_RS03595 a8c28a9db547d78d0f1d5e8b47cbd356 362 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 118 128 - T 29-03-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.9E-43 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 29-03-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 Gene3D G3DSA:3.30.70.120 1 109 3.5E-48 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 SMART SM00938 4 105 4.6E-66 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 SUPERFAMILY SSF54913 1 112 6.35E-45 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 29-03-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 PIRSF PIRSF039144 1 112 1.9E-55 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 23 41 1.5E-43 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 83 103 1.5E-43 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 2 17 1.5E-43 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y880_RS25055 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 52 75 1.5E-43 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 29-03-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 878 18.762 T 29-03-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 136 147 - T 29-03-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 Gene3D G3DSA:1.20.1440.90 276 387 9.6E-26 T 29-03-2018 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 188 204 8.9E-69 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 135 148 8.9E-69 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 247 262 8.9E-69 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 8.9E-69 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 707 733 8.9E-69 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 8.9E-69 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 8.9E-69 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 SUPERFAMILY SSF51621 5 878 0.0 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS16590 6a315838e7bd37f3918b54e058c85831 878 Pfam PF00311 Phosphoenolpyruvate carboxylase 131 878 8.8E-275 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y880_RS22590 100423210740590b89c2bf49d1903123 164 Pfam PF03692 Putative zinc- or iron-chelating domain 59 159 1.2E-15 T 29-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 104 129 - T 29-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 Gene3D G3DSA:3.20.20.120 134 373 2.2E-49 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 6 372 7.1E-152 T 29-03-2018 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 129 1.3E-35 T 29-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 Pfam PF13378 Enolase C-terminal domain-like 152 365 2.4E-44 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 Gene3D G3DSA:3.30.390.10 1 133 7.3E-33 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 195 226 - T 29-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 SUPERFAMILY SSF51604 129 370 3.93E-61 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 SUPERFAMILY SSF54826 6 130 1.44E-32 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS09885 05119e58afb8237341d725cb8226dd24 373 SMART SM00922 147 245 5.1E-17 T 29-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 SUPERFAMILY SSF56784 432 451 4.89E-52 T 29-03-2018 IPR023214 HAD-like domain Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 SUPERFAMILY SSF56784 490 732 4.89E-52 T 29-03-2018 IPR023214 HAD-like domain Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 182 735 4.3E-175 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 SUPERFAMILY SSF55008 41 111 6.03E-10 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 Gene3D G3DSA:3.40.1110.10 450 558 1.5E-26 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 579 589 6.5E-21 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 433 447 6.5E-21 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 632 651 6.5E-21 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 656 668 6.5E-21 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 282 296 6.5E-21 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00941 Cadmium-transporting ATPase signature 217 237 1.6E-10 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00941 Cadmium-transporting ATPase signature 298 314 1.6E-10 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 PRINTS PR00941 Cadmium-transporting ATPase signature 317 331 1.6E-10 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 SUPERFAMILY SSF81653 235 332 2.48E-22 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 435 441 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 Gene3D G3DSA:3.30.70.100 35 117 3.6E-6 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 Gene3D G3DSA:1.20.1110.10 183 449 3.7E-36 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 532 708 1.4E-38 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 205 458 6.6E-37 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 Pfam PF00702 haloacid dehalogenase-like hydrolase 431 646 2.7E-41 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 Pfam PF00122 E1-E2 ATPase 233 412 1.9E-54 T 29-03-2018 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 SUPERFAMILY SSF81665 183 236 3.27E-14 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 SUPERFAMILY SSF81665 333 420 3.27E-14 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS16605 73919f8649989b8fe67ff170994449a7 740 Gene3D G3DSA:3.40.50.1000 559 700 5.8E-36 T 29-03-2018 IPR023214 HAD-like domain Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.50.100 907 1010 5.2E-32 T 29-03-2018 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1366 0.0 T 29-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1316 2.6E-77 T 29-03-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.50.100 1011 1040 4.8E-6 T 29-03-2018 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 SUPERFAMILY SSF64484 1133 1363 0.0 T 29-03-2018 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 SUPERFAMILY SSF64484 16 944 0.0 T 29-03-2018 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 4.4E-20 T 29-03-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 381 2.2E-7 T 29-03-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 2.5E-28 T 29-03-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 SMART SM00663 235 514 5.7E-185 T 29-03-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.40.20 346 488 4.8E-40 T 29-03-2018 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 643 4.9E-30 T 29-03-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 14 1387 19.056 T 29-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 342 2.4E-90 T 29-03-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.50.100 1153 1213 5.5E-15 T 29-03-2018 Y880_RS19600 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.50.100 1041 1123 7.2E-11 T 29-03-2018 Y880_RS00125 ffc77443e95b7fa4ac61a12215f74265 544 Pfam PF08479 POTRA domain, ShlB-type 48 121 5.8E-18 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y880_RS00125 ffc77443e95b7fa4ac61a12215f74265 544 Gene3D G3DSA:3.10.20.310 53 120 5.1E-13 T 29-03-2018 Y880_RS00125 ffc77443e95b7fa4ac61a12215f74265 544 Gene3D G3DSA:3.10.20.310 121 161 0.11 T 29-03-2018 Y880_RS00125 ffc77443e95b7fa4ac61a12215f74265 544 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 184 506 7.2E-21 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y880_RS00125 ffc77443e95b7fa4ac61a12215f74265 544 Gene3D G3DSA:2.40.160.50 162 544 2.3E-47 T 29-03-2018 Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 Gene3D G3DSA:3.90.1280.10 228 284 7.3E-21 T 29-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 SUPERFAMILY SSF64397 4 234 7.72E-70 T 29-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 Gene3D G3DSA:3.55.30.10 1 173 1.2E-58 T 29-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 Gene3D G3DSA:1.10.287.480 183 227 2.2E-20 T 29-03-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 287 32.192 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 PIRSF PIRSF005261 1 287 1.1E-76 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 Pfam PF01430 Hsp33 protein 5 276 1.1E-82 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Y880_RS24565 4cc0f96136abef540f07c62c4e11ab6a 297 SUPERFAMILY SSF118352 226 285 3.01E-18 T 29-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Y880_RS01315 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Pfam PF01381 Helix-turn-helix 7 60 9.7E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS01315 d341dc888990dd6c8e58fb6d7fdfbe5f 237 SUPERFAMILY SSF47413 3 61 2.49E-13 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS01315 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Gene3D G3DSA:2.10.109.10 109 235 1.1E-19 T 29-03-2018 Y880_RS01315 d341dc888990dd6c8e58fb6d7fdfbe5f 237 SMART SM00530 6 60 3.3E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS01315 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Gene3D G3DSA:1.10.260.40 1 68 5.1E-16 T 29-03-2018 Y880_RS01315 d341dc888990dd6c8e58fb6d7fdfbe5f 237 SUPERFAMILY SSF51306 101 233 6.54E-22 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS01315 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Pfam PF00717 Peptidase S24-like 148 214 1.4E-12 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS03815 971e06b06830b402734130a107ae32f8 380 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 33 277 2.7E-14 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Y880_RS03815 971e06b06830b402734130a107ae32f8 380 Gene3D G3DSA:3.40.50.720 1 103 7.9E-20 T 29-03-2018 Y880_RS03815 971e06b06830b402734130a107ae32f8 380 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 363 44.846 T 29-03-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 Y880_RS03815 971e06b06830b402734130a107ae32f8 380 Gene3D G3DSA:3.40.50.720 104 257 1.1E-36 T 29-03-2018 Y880_RS03815 971e06b06830b402734130a107ae32f8 380 SUPERFAMILY SSF51735 91 258 2.83E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS03815 971e06b06830b402734130a107ae32f8 380 Pfam PF11890 Domain of unknown function (DUF3410) 290 376 2.6E-22 T 29-03-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 Y880_RS03815 971e06b06830b402734130a107ae32f8 380 SUPERFAMILY SSF52283 5 103 2.76E-15 T 29-03-2018 Y880_RS03815 971e06b06830b402734130a107ae32f8 380 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 256 1.7E-34 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y880_RS03815 971e06b06830b402734130a107ae32f8 380 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 SUPERFAMILY SSF69055 300 393 1.7E-30 T 29-03-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 7 390 46.959 T 29-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 Gene3D G3DSA:3.40.50.720 4 153 4.0E-45 T 29-03-2018 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 149 237 8.3E-38 T 29-03-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 135 8.8E-43 T 29-03-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 PIRSF PIRSF006205 4 396 1.5E-148 T 29-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6 389 9.3E-158 T 29-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 SUPERFAMILY SSF55347 129 272 1.8E-61 T 29-03-2018 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 Gene3D G3DSA:1.10.1740.10 310 394 1.9E-29 T 29-03-2018 Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 SUPERFAMILY SSF51735 4 153 9.97E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS16405 c59dcb149784e9b68dec1a7a9e07b570 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 269 385 2.0E-43 T 29-03-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Y880_RS22450 48c7ca033e33c1815688dc0c2430068d 101 SUPERFAMILY SSF101386 1 99 2.94E-30 T 29-03-2018 Y880_RS22450 48c7ca033e33c1815688dc0c2430068d 101 Gene3D G3DSA:1.10.287.1080 1 97 2.4E-20 T 29-03-2018 Y880_RS22450 48c7ca033e33c1815688dc0c2430068d 101 PIRSF PIRSF029826 1 101 5.7E-36 T 29-03-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Y880_RS22450 48c7ca033e33c1815688dc0c2430068d 101 Pfam PF12643 MazG-like family 31 94 1.9E-7 T 29-03-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 26 529 8.4E-212 T 29-03-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 322 343 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 142 154 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 25 50 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 99 123 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 201 220 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 357 375 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 385 404 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 72 95 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 435 456 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 252 273 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 172 190 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 298 313 1.3E-121 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 254 308 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 34 477 5.5E-151 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 Gene3D G3DSA:1.20.210.10 22 530 3.2E-218 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27145 cc5bee05f25a00c94538a6354be68929 530 SUPERFAMILY SSF81442 23 529 6.54E-193 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS25745 7fffbac0136ff8fef594b3df5008f715 211 TIGRFAM TIGR01375 soxG: sarcosine oxidase, gamma subunit family 52 204 8.2E-62 T 29-03-2018 IPR006280 Sarcosine oxidase, gamma subunit, heterotetrameric KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y880_RS25745 7fffbac0136ff8fef594b3df5008f715 211 SUPERFAMILY SSF103025 84 209 4.91E-21 T 29-03-2018 Y880_RS25745 7fffbac0136ff8fef594b3df5008f715 211 Pfam PF04268 Sarcosine oxidase, gamma subunit family 53 204 3.2E-59 T 29-03-2018 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y880_RS25745 7fffbac0136ff8fef594b3df5008f715 211 Gene3D G3DSA:3.30.70.1520 46 127 6.9E-22 T 29-03-2018 Y880_RS16110 4ab406e7233441d4effaea41a438eb84 575 Gene3D G3DSA:1.20.140.10 289 455 1.2E-34 T 29-03-2018 Y880_RS16110 4ab406e7233441d4effaea41a438eb84 575 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 402 421 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS16110 4ab406e7233441d4effaea41a438eb84 575 Gene3D G3DSA:2.40.110.10 177 288 1.1E-26 T 29-03-2018 Y880_RS16110 4ab406e7233441d4effaea41a438eb84 575 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 287 443 2.3E-35 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS16110 4ab406e7233441d4effaea41a438eb84 575 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 178 276 3.1E-16 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS16110 4ab406e7233441d4effaea41a438eb84 575 SUPERFAMILY SSF56645 101 296 1.26E-40 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS16110 4ab406e7233441d4effaea41a438eb84 575 SUPERFAMILY SSF47203 285 445 3.22E-39 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS13190 88949f1bfb7736e19d390c02f786f678 310 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 37 123 1.0E-9 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS13190 88949f1bfb7736e19d390c02f786f678 310 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 167 262 7.7E-13 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS13190 88949f1bfb7736e19d390c02f786f678 310 SUPERFAMILY SSF50475 203 272 4.8E-7 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS13190 88949f1bfb7736e19d390c02f786f678 310 Gene3D G3DSA:2.30.110.10 29 151 1.3E-8 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS13190 88949f1bfb7736e19d390c02f786f678 310 Gene3D G3DSA:2.30.110.10 162 302 3.0E-13 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS07325 e532af3b555e18fcbf47b89dfbc84374 302 Pfam PF04954 Siderophore-interacting protein 146 298 6.7E-38 T 29-03-2018 IPR007037 Siderophore-interacting protein Y880_RS07325 e532af3b555e18fcbf47b89dfbc84374 302 SUPERFAMILY SSF63380 6 128 5.67E-11 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS07325 e532af3b555e18fcbf47b89dfbc84374 302 Pfam PF08021 Siderophore-interacting FAD-binding domain 13 129 1.0E-39 T 29-03-2018 IPR013113 FAD-binding 9, siderophore-interacting Y880_RS07325 e532af3b555e18fcbf47b89dfbc84374 302 Gene3D G3DSA:3.40.50.80 140 301 4.6E-40 T 29-03-2018 Y880_RS07325 e532af3b555e18fcbf47b89dfbc84374 302 Gene3D G3DSA:2.40.30.10 1 129 2.1E-33 T 29-03-2018 Y880_RS20290 5c4aa40ac033c02a244623ae76630481 192 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 14 186 2.0E-83 T 29-03-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 Y880_RS20290 5c4aa40ac033c02a244623ae76630481 192 Pfam PF01923 Cobalamin adenosyltransferase 8 173 1.4E-55 T 29-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 Y880_RS20290 5c4aa40ac033c02a244623ae76630481 192 Gene3D G3DSA:1.20.1200.10 17 191 4.9E-57 T 29-03-2018 Y880_RS20290 5c4aa40ac033c02a244623ae76630481 192 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 186 1.2E-52 T 29-03-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 Y880_RS20290 5c4aa40ac033c02a244623ae76630481 192 SUPERFAMILY SSF89028 7 186 1.45E-59 T 29-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 Y880_RS01795 90a6d83c3ea9c739564b513fee210330 352 Gene3D G3DSA:3.40.50.10800 24 111 1.8E-18 T 29-03-2018 Y880_RS01795 90a6d83c3ea9c739564b513fee210330 352 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 30 341 5.5E-111 T 29-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y880_RS01795 90a6d83c3ea9c739564b513fee210330 352 Pfam PF02445 Quinolinate synthetase A protein 34 339 2.9E-104 T 29-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y880_RS01795 90a6d83c3ea9c739564b513fee210330 352 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 346 70.748 T 29-03-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y880_RS01795 90a6d83c3ea9c739564b513fee210330 352 Gene3D G3DSA:3.40.50.10800 211 322 2.7E-36 T 29-03-2018 Y880_RS01795 90a6d83c3ea9c739564b513fee210330 352 Gene3D G3DSA:3.40.50.10800 117 210 1.3E-20 T 29-03-2018 Y880_RS01795 90a6d83c3ea9c739564b513fee210330 352 SUPERFAMILY SSF142754 31 340 1.29E-109 T 29-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y880_RS28095 104048a121a1b25e2f3fe85c9e22f188 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 63 7.2E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28095 104048a121a1b25e2f3fe85c9e22f188 221 Gene3D G3DSA:1.10.10.60 55 189 6.6E-4 T 29-03-2018 Y880_RS28095 104048a121a1b25e2f3fe85c9e22f188 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 6.1E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28095 104048a121a1b25e2f3fe85c9e22f188 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 6.1E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28095 104048a121a1b25e2f3fe85c9e22f188 221 Gene3D G3DSA:1.10.10.60 1 54 1.5E-15 T 29-03-2018 Y880_RS28095 104048a121a1b25e2f3fe85c9e22f188 221 SUPERFAMILY SSF46689 11 82 1.59E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS18475 94b7971ee5142b3586c40c68840b4c83 205 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 45.084 T 29-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Y880_RS18475 94b7971ee5142b3586c40c68840b4c83 205 SUPERFAMILY SSF142695 3 172 1.7E-65 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Y880_RS18475 94b7971ee5142b3586c40c68840b4c83 205 Pfam PF00925 GTP cyclohydrolase II 8 170 1.4E-67 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Y880_RS18475 94b7971ee5142b3586c40c68840b4c83 205 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 1.3E-80 T 29-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Y880_RS02910 c1c1817dc612b22a1d22826bca3c5ecf 315 SUPERFAMILY SSF51182 25 297 5.44E-70 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS02910 c1c1817dc612b22a1d22826bca3c5ecf 315 PIRSF PIRSF006232 19 300 4.8E-81 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y880_RS02910 c1c1817dc612b22a1d22826bca3c5ecf 315 Gene3D G3DSA:2.60.120.10 18 264 2.6E-62 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS02910 c1c1817dc612b22a1d22826bca3c5ecf 315 Pfam PF02678 Pirin 40 139 1.8E-30 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y880_RS02910 c1c1817dc612b22a1d22826bca3c5ecf 315 Pfam PF05726 Pirin C-terminal cupin domain 191 288 3.4E-23 T 29-03-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 884 0.0 T 29-03-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 Gene3D G3DSA:1.25.50.10 556 884 2.5E-131 T 29-03-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 2.4E-10 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 331 2.4E-10 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 132 147 2.4E-10 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 264 274 2.4E-10 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 300 315 2.4E-10 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 450 554 1.0E-30 T 29-03-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 Gene3D G3DSA:2.60.40.1730 16 199 1.4E-27 T 29-03-2018 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 559 885 3.3E-123 T 29-03-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 SUPERFAMILY SSF63737 4 199 2.22E-42 T 29-03-2018 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 SUPERFAMILY SSF55486 209 457 2.01E-78 T 29-03-2018 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 Pfam PF01433 Peptidase family M1 domain 214 445 1.2E-60 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y880_RS13425 3cc9f42184b052f68063117b6da8edfa 885 Gene3D G3DSA:1.10.390.10 286 449 1.1E-51 T 29-03-2018 Y880_RS26330 2bfbb81552d9b39d4380dda3294a4d9f 284 SUPERFAMILY SSF54427 154 282 1.31E-5 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS26330 2bfbb81552d9b39d4380dda3294a4d9f 284 Pfam PF04280 Tim44-like domain 161 282 4.1E-8 T 29-03-2018 IPR007379 Tim44-like domain Y880_RS26330 2bfbb81552d9b39d4380dda3294a4d9f 284 SMART SM00978 152 283 2.8E-20 T 29-03-2018 IPR007379 Tim44-like domain Y880_RS00490 edbbaadb69348ba10d5447d010391487 246 SUPERFAMILY SSF53335 21 244 1.32E-33 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS00490 edbbaadb69348ba10d5447d010391487 246 Pfam PF13649 Methyltransferase domain 62 162 8.7E-12 T 29-03-2018 Y880_RS00490 edbbaadb69348ba10d5447d010391487 246 Gene3D G3DSA:3.40.50.150 18 245 4.4E-32 T 29-03-2018 Y880_RS00490 edbbaadb69348ba10d5447d010391487 246 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 246 40.533 T 29-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 Y880_RS00490 edbbaadb69348ba10d5447d010391487 246 PIRSF PIRSF006325 1 246 8.0E-115 T 29-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 Y880_RS00490 edbbaadb69348ba10d5447d010391487 246 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 5 245 7.9E-87 T 29-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 Y880_RS09270 22a9e6b7ae69ba8c619a78d5c7ce7d5c 196 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 1.5E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09270 22a9e6b7ae69ba8c619a78d5c7ce7d5c 196 Pfam PF03466 LysR substrate binding domain 95 194 1.4E-10 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09270 22a9e6b7ae69ba8c619a78d5c7ce7d5c 196 SUPERFAMILY SSF53850 97 194 1.61E-10 T 29-03-2018 Y880_RS09270 22a9e6b7ae69ba8c619a78d5c7ce7d5c 196 SUPERFAMILY SSF46785 5 118 2.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09270 22a9e6b7ae69ba8c619a78d5c7ce7d5c 196 Gene3D G3DSA:1.10.10.10 10 91 6.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09270 22a9e6b7ae69ba8c619a78d5c7ce7d5c 196 Gene3D G3DSA:3.40.190.10 92 196 9.3E-11 T 29-03-2018 Y880_RS01455 60507205f09995f904939f536e07f3da 299 Gene3D G3DSA:3.40.50.1100 25 133 2.6E-32 T 29-03-2018 Y880_RS01455 60507205f09995f904939f536e07f3da 299 SUPERFAMILY SSF53686 5 294 2.23E-90 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS01455 60507205f09995f904939f536e07f3da 299 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 285 2.6E-68 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS01455 60507205f09995f904939f536e07f3da 299 Gene3D G3DSA:3.40.50.1100 134 299 7.4E-45 T 29-03-2018 Y880_RS01455 60507205f09995f904939f536e07f3da 299 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Y880_RS01455 60507205f09995f904939f536e07f3da 299 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 296 1.3E-124 T 29-03-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y880_RS01455 60507205f09995f904939f536e07f3da 299 TIGRFAM TIGR01138 cysM: cysteine synthase B 7 296 8.5E-171 T 29-03-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 SUPERFAMILY SSF47384 241 319 2.75E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 369 465 1.7E-10 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 Gene3D G3DSA:1.10.287.130 236 314 8.1E-12 T 29-03-2018 Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 SUPERFAMILY SSF55874 310 473 9.95E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 Pfam PF00672 HAMP domain 205 251 2.0E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 SMART SM00388 255 320 3.4E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 SMART SM00304 204 255 3.5E-5 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 319 2.2E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 SMART SM00387 365 474 2.7E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 Gene3D G3DSA:3.30.565.10 315 474 3.2E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 SUPERFAMILY SSF103190 79 179 2.86E-12 T 29-03-2018 IPR029151 Periplasmic sensor domain-like Y880_RS29000 8b9621bc8b058c536caffe65fc674321 474 Gene3D G3DSA:3.30.450.20 28 177 3.7E-32 T 29-03-2018 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 SUPERFAMILY SSF51419 75 352 1.23E-67 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PIRSF PIRSF001336 1 636 2.1E-250 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 282 297 - T 29-03-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 TIGRFAM TIGR01273 speA: arginine decarboxylase 14 636 3.9E-276 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 SUPERFAMILY SSF50621 459 567 1.81E-6 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 107 125 - T 29-03-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 100 350 1.5E-43 T 29-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 12 636 41.846 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 Gene3D G3DSA:2.40.37.10 404 584 8.2E-66 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 Gene3D G3DSA:2.40.37.10 6 89 1.5E-17 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 468 489 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 546 567 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 153 168 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 179 200 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 493 518 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 203 225 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 99 113 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 75 90 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 330 347 5.1E-69 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 130 142 2.4E-16 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 340 359 2.4E-16 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 107 125 2.4E-16 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 246 259 2.4E-16 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 546 559 2.4E-16 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS22705 2b3b664b3ddbaa450286e18ab7433d74 636 Gene3D G3DSA:3.20.20.10 90 352 4.7E-41 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 Gene3D G3DSA:3.30.565.10 279 431 4.2E-42 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 4.5E-22 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 4.5E-22 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 4.5E-22 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 4.5E-22 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 167 275 4.7E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 SUPERFAMILY SSF47384 161 196 2.16E-6 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 Gene3D G3DSA:3.10.580.10 5 159 3.0E-15 T 29-03-2018 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 424 4.9E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 SUPERFAMILY SSF54631 11 136 2.85E-13 T 29-03-2018 Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF00571 CBS domain 11 57 1.1E-5 T 29-03-2018 IPR000644 CBS domain Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF00571 CBS domain 76 134 2.3E-6 T 29-03-2018 IPR000644 CBS domain Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 SMART SM00387 317 425 4.5E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 SUPERFAMILY SSF55874 268 424 7.33E-46 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12380 1e7417d12083afcd1152b03702f4ae1b 433 Gene3D G3DSA:1.10.287.130 160 273 5.3E-9 T 29-03-2018 Y880_RS00500 aa1eda225854c6735262441b9d16e1ea 250 Gene3D G3DSA:3.40.190.10 44 248 2.3E-4 T 29-03-2018 Y880_RS00500 aa1eda225854c6735262441b9d16e1ea 250 SUPERFAMILY SSF53850 21 245 4.13E-20 T 29-03-2018 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Pfam PF00384 Molybdopterin oxidoreductase 79 492 9.2E-84 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 SMART SM00926 7 60 2.2E-19 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Gene3D G3DSA:3.40.50.740 64 169 4.9E-18 T 29-03-2018 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 PIRSF PIRSF036643 2 731 1.6E-169 T 29-03-2018 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Gene3D G3DSA:2.20.25.90 7 58 8.1E-18 T 29-03-2018 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 8 56 8.5E-18 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 SUPERFAMILY SSF53706 6 499 1.1E-197 T 29-03-2018 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Pfam PF01568 Molydopterin dinucleotide binding domain 591 700 7.6E-28 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Pfam PF04324 BFD-like [2Fe-2S] binding domain 853 899 1.2E-8 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Gene3D G3DSA:3.40.50.740 261 549 1.9E-88 T 29-03-2018 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 438 455 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Gene3D G3DSA:3.40.228.10 170 260 2.7E-24 T 29-03-2018 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 12 30 - T 29-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 SUPERFAMILY SSF50692 562 706 1.18E-41 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain Y880_RS05985 8a250f94b2e22cc289740f093d18791f 908 Gene3D G3DSA:2.40.40.20 550 707 4.0E-41 T 29-03-2018 Y880_RS25190 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 29-03-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS25190 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 14.99 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS25190 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 51 2.4E-25 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS25190 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 SUPERFAMILY SSF57829 1 49 2.93E-18 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Y880_RS25190 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 Pfam PF00471 Ribosomal protein L33 4 49 3.6E-17 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS26210 8fa4cec39ef9a9bc9a5ca142c0d7c6f3 260 SUPERFAMILY SSF53850 25 260 2.17E-86 T 29-03-2018 Y880_RS26210 8fa4cec39ef9a9bc9a5ca142c0d7c6f3 260 Gene3D G3DSA:3.40.190.10 21 118 1.2E-26 T 29-03-2018 Y880_RS26210 8fa4cec39ef9a9bc9a5ca142c0d7c6f3 260 Pfam PF03180 NLPA lipoprotein 25 260 9.8E-103 T 29-03-2018 IPR004872 Lipoprotein NlpA family Y880_RS26210 8fa4cec39ef9a9bc9a5ca142c0d7c6f3 260 Gene3D G3DSA:3.40.190.10 119 260 1.8E-57 T 29-03-2018 Y880_RS26210 8fa4cec39ef9a9bc9a5ca142c0d7c6f3 260 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 45 259 5.1E-70 T 29-03-2018 IPR004872 Lipoprotein NlpA family Y880_RS26210 8fa4cec39ef9a9bc9a5ca142c0d7c6f3 260 PIRSF PIRSF002854 1 260 6.1E-107 T 29-03-2018 IPR004872 Lipoprotein NlpA family Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82714 187 267 1.7E-11 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 Gene3D G3DSA:3.30.70.1320 228 310 8.1E-16 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82714 714 800 2.75E-14 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 Gene3D G3DSA:3.30.70.1430 562 668 2.0E-10 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 Pfam PF00873 AcrB/AcrD/AcrF family 7 1013 3.0E-172 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 Gene3D G3DSA:3.30.70.1430 42 146 2.2E-28 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 Gene3D G3DSA:3.30.2090.10 711 801 3.7E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82693 42 136 1.83E-19 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82693 140 184 3.14E-17 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82693 270 325 3.14E-17 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82866 301 490 2.22E-36 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82866 796 1019 1.05E-46 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 3.0E-23 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 3.0E-23 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 3.0E-23 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 3.0E-23 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 3.0E-23 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 547 564 3.0E-23 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 SUPERFAMILY SSF82693 566 659 7.59E-5 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 Gene3D G3DSA:1.20.1640.10 821 1025 1.2E-30 T 29-03-2018 Y880_RS16535 4dd83ccbf0cd9fcf36087b8675778b7f 1025 Gene3D G3DSA:1.20.1640.10 311 501 1.8E-31 T 29-03-2018 Y880_RS13350 0183fd8e809b7a73fdef37799c2b0a06 326 SUPERFAMILY SSF52540 10 298 2.84E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13350 0183fd8e809b7a73fdef37799c2b0a06 326 Gene3D G3DSA:1.10.8.300 208 323 1.6E-34 T 29-03-2018 Y880_RS13350 0183fd8e809b7a73fdef37799c2b0a06 326 Gene3D G3DSA:3.40.50.300 25 191 1.2E-25 T 29-03-2018 Y880_RS13350 0183fd8e809b7a73fdef37799c2b0a06 326 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 44 174 1.4E-63 T 29-03-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Y880_RS13350 0183fd8e809b7a73fdef37799c2b0a06 326 PIRSF PIRSF002849 1 326 7.1E-128 T 29-03-2018 Y880_RS05105 66a9c2b99d265e403af7fa40fe6aa20a 702 SUPERFAMILY SSF56935 367 664 3.4E-82 T 29-03-2018 Y880_RS05105 66a9c2b99d265e403af7fa40fe6aa20a 702 SUPERFAMILY SSF56935 37 309 3.4E-82 T 29-03-2018 Y880_RS05105 66a9c2b99d265e403af7fa40fe6aa20a 702 Gene3D G3DSA:2.40.170.20 164 702 1.3E-45 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS05105 66a9c2b99d265e403af7fa40fe6aa20a 702 Pfam PF00593 TonB dependent receptor 243 660 1.7E-26 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS05105 66a9c2b99d265e403af7fa40fe6aa20a 702 Gene3D G3DSA:2.170.130.10 34 163 1.6E-25 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS05105 66a9c2b99d265e403af7fa40fe6aa20a 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 156 5.7E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 8.9E-35 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 8.9E-35 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 8.9E-35 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 8.9E-35 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 29-03-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 29-03-2018 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 69.373 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 286 9.8E-116 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 PIRSF PIRSF001365 1 292 2.3E-100 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 285 1.6E-109 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 SMART SM01130 1 289 1.5E-151 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 Gene3D G3DSA:3.20.20.70 1 292 1.8E-103 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS01825 a690f3e6c6bcced61a82ee4278ce937e 292 SUPERFAMILY SSF51569 2 289 3.87E-107 T 29-03-2018 Y880_RS24515 3461ed7329d4eaf39b28996f429d0228 185 Pfam PF01817 Chorismate mutase type II 31 101 3.0E-8 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS24515 3461ed7329d4eaf39b28996f429d0228 185 SMART SM00830 23 103 8.5E-14 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS24515 3461ed7329d4eaf39b28996f429d0228 185 SUPERFAMILY SSF48600 30 182 3.36E-30 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS24515 3461ed7329d4eaf39b28996f429d0228 185 PIRSF PIRSF026640 1 183 3.5E-62 T 29-03-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS24515 3461ed7329d4eaf39b28996f429d0228 185 Gene3D G3DSA:1.20.59.10 31 108 3.4E-14 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS24515 3461ed7329d4eaf39b28996f429d0228 185 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 27 134 3.3E-38 T 29-03-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Gene3D G3DSA:3.30.565.10 656 836 3.3E-44 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SMART SM00062 86 292 3.6E-21 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SMART SM00062 324 550 3.9E-6 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Gene3D G3DSA:3.40.190.10 308 438 6.3E-9 T 29-03-2018 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Gene3D G3DSA:3.40.190.10 71 297 1.0E-11 T 29-03-2018 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Pfam PF00072 Response regulator receiver domain 864 978 1.1E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Pfam PF00512 His Kinase A (phospho-acceptor) domain 608 673 3.6E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SUPERFAMILY SSF55874 663 833 1.01E-40 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SUPERFAMILY SSF53850 87 286 1.0E-28 T 29-03-2018 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Gene3D G3DSA:3.40.50.2300 848 980 6.3E-37 T 29-03-2018 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SMART SM00448 862 978 3.0E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SUPERFAMILY SSF53850 318 547 4.76E-25 T 29-03-2018 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Gene3D G3DSA:3.40.190.10 439 504 2.5E-8 T 29-03-2018 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SMART SM00387 720 835 1.7E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SUPERFAMILY SSF52172 862 979 1.02E-34 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Gene3D G3DSA:1.10.287.130 597 655 1.9E-13 T 29-03-2018 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SMART SM00388 607 673 2.7E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 721 833 3.2E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 SUPERFAMILY SSF47384 593 674 1.31E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 760 774 3.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 778 788 3.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 795 813 3.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 819 832 3.9E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 88 284 2.3E-18 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS10305 95c34e9c60a65410b47beb20d8112501 992 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 339 547 5.5E-17 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23705 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 ProSitePatterns PS00216 Sugar transport proteins signature 1. 102 118 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS23705 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 Gene3D G3DSA:1.20.1250.20 40 232 4.7E-35 T 29-03-2018 Y880_RS23705 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 Pfam PF07690 Major Facilitator Superfamily 52 360 2.0E-39 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS23705 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 Gene3D G3DSA:1.20.1250.20 242 438 2.7E-18 T 29-03-2018 Y880_RS23705 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 SUPERFAMILY SSF103473 40 424 1.31E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 Gene3D G3DSA:3.40.50.720 1 136 6.1E-44 T 29-03-2018 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 Gene3D G3DSA:3.40.50.720 137 295 8.6E-37 T 29-03-2018 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 1.9E-47 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 1.5E-37 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 Gene3D G3DSA:3.30.70.260 328 408 5.3E-14 T 29-03-2018 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 SUPERFAMILY SSF52283 7 136 3.4E-51 T 29-03-2018 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 SUPERFAMILY SSF55021 334 408 2.18E-16 T 29-03-2018 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Y880_RS28215 9deeaffbb2ecd64557a13d509f548150 409 SUPERFAMILY SSF51735 108 295 3.19E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS28240 b79f606b93b86f80a9881c7d548ce9b4 344 SUPERFAMILY SSF52768 2 341 1.1E-85 T 29-03-2018 Y880_RS28240 b79f606b93b86f80a9881c7d548ce9b4 344 PRINTS PR01270 Histone deacetylase superfamily signature 274 284 1.3E-12 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS28240 b79f606b93b86f80a9881c7d548ce9b4 344 PRINTS PR01270 Histone deacetylase superfamily signature 155 178 1.3E-12 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS28240 b79f606b93b86f80a9881c7d548ce9b4 344 PRINTS PR01270 Histone deacetylase superfamily signature 188 203 1.3E-12 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS28240 b79f606b93b86f80a9881c7d548ce9b4 344 Gene3D G3DSA:3.40.800.20 1 342 2.1E-79 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS28240 b79f606b93b86f80a9881c7d548ce9b4 344 Pfam PF00850 Histone deacetylase domain 28 336 5.1E-61 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 232 244 4.7E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 216 4.7E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 216 232 4.7E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 Gene3D G3DSA:3.30.450.40 6 115 0.17 T 29-03-2018 IPR029016 GAF domain-like Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 Pfam PF00196 Bacterial regulatory proteins, luxR family 201 252 9.8E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 ProSitePatterns PS00622 LuxR-type HTH domain signature. 216 243 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 Gene3D G3DSA:1.10.10.10 140 260 1.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 SMART SM00421 199 256 3.0E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16145 25f872dd2fc6076195a5d01a68b23ab3 261 SUPERFAMILY SSF46894 196 258 3.03E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS27270 52686d1e87b65186fb45bbd7babd221e 95 SUPERFAMILY SSF51182 4 91 5.2E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS27270 52686d1e87b65186fb45bbd7babd221e 95 Gene3D G3DSA:2.60.120.10 3 95 6.0E-15 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS27270 52686d1e87b65186fb45bbd7babd221e 95 Pfam PF07883 Cupin domain 23 90 7.9E-8 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS10500 a8eeb2f352f2ec375b6a25d5e396d23f 226 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 35 215 1.3E-63 T 29-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Y880_RS10500 a8eeb2f352f2ec375b6a25d5e396d23f 226 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 204 1.2E-75 T 29-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Y880_RS10500 a8eeb2f352f2ec375b6a25d5e396d23f 226 SUPERFAMILY SSF55729 2 220 6.89E-94 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS10500 a8eeb2f352f2ec375b6a25d5e396d23f 226 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 226 100.425 T 29-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Y880_RS24985 1a209ae39dc3410429ff54689c551667 111 Gene3D G3DSA:3.30.920.10 1 111 5.8E-27 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS24985 1a209ae39dc3410429ff54689c551667 111 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 5 108 3.2E-34 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS24985 1a209ae39dc3410429ff54689c551667 111 Pfam PF01491 Frataxin-like domain 4 105 1.9E-22 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS24985 1a209ae39dc3410429ff54689c551667 111 ProSitePatterns PS01344 Frataxin family signature. 51 65 - T 29-03-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS24985 1a209ae39dc3410429ff54689c551667 111 Hamap MF_00142 Protein CyaY [cyaY]. 4 108 25.623 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS24985 1a209ae39dc3410429ff54689c551667 111 SUPERFAMILY SSF55387 2 106 3.49E-31 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS24985 1a209ae39dc3410429ff54689c551667 111 SMART SM01219 4 109 1.1E-46 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 SUPERFAMILY SSF53328 5 210 5.49E-67 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 Gene3D G3DSA:3.10.25.10 210 311 8.6E-30 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 Gene3D G3DSA:3.40.50.170 2 209 7.2E-70 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 305 37.137 T 29-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 306 5.5E-95 T 29-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 SUPERFAMILY SSF50486 208 307 4.71E-31 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 Pfam PF02911 Formyl transferase, C-terminal domain 207 302 5.6E-26 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 Pfam PF00551 Formyl transferase 6 184 4.8E-47 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS26675 a8fac33f7f1b301769e35595b171f67d 314 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 29-03-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS15780 80d5fdf6347d0133c58bb3867e1d0d88 108 Pfam PF00462 Glutaredoxin 16 80 1.5E-18 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Y880_RS15780 80d5fdf6347d0133c58bb3867e1d0d88 108 SUPERFAMILY SSF52833 1 103 1.53E-34 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS15780 80d5fdf6347d0133c58bb3867e1d0d88 108 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 1.8E-46 T 29-03-2018 IPR004480 Monothiol glutaredoxin-related Y880_RS15780 80d5fdf6347d0133c58bb3867e1d0d88 108 Gene3D G3DSA:3.40.30.10 1 108 1.5E-29 T 29-03-2018 Y880_RS15780 80d5fdf6347d0133c58bb3867e1d0d88 108 PIRSF PIRSF005894 1 107 3.1E-50 T 29-03-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 Y880_RS20465 52e8b4b61635dfaa9791524f7549dd69 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.1E-46 T 29-03-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 Y880_RS20465 52e8b4b61635dfaa9791524f7549dd69 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 29-03-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 Y880_RS20465 52e8b4b61635dfaa9791524f7549dd69 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.217 T 29-03-2018 IPR023035 Ribosomal protein S9, bacterial/plastid Y880_RS20465 52e8b4b61635dfaa9791524f7549dd69 130 Gene3D G3DSA:3.30.230.10 3 130 3.0E-52 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS20465 52e8b4b61635dfaa9791524f7549dd69 130 SUPERFAMILY SSF54211 6 130 1.93E-48 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 SUPERFAMILY SSF69349 444 626 1.1E-37 T 29-03-2018 Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 Gene3D G3DSA:2.40.50.230 372 454 2.4E-39 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 Gene3D G3DSA:3.55.50.10 95 188 3.8E-31 T 29-03-2018 Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 SUPERFAMILY SSF69279 10 184 4.82E-57 T 29-03-2018 Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 2.9E-125 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 Pfam PF05954 Phage late control gene D protein (GPD) 29 322 2.2E-79 T 29-03-2018 Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 SUPERFAMILY SSF69279 184 366 3.91E-45 T 29-03-2018 Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 SUPERFAMILY SSF69255 366 454 2.46E-34 T 29-03-2018 Y880_RS24940 fb8e0826d6abf26740af6cdff15a4960 691 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 524 1.8E-204 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 Pfam PF00271 Helicase conserved C-terminal domain 241 344 2.7E-26 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 SMART SM00490 263 344 1.6E-32 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 Gene3D G3DSA:3.40.50.300 227 377 5.5E-44 T 29-03-2018 Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 SUPERFAMILY SSF52540 80 365 3.4E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 SMART SM00487 20 227 8.3E-62 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 Gene3D G3DSA:3.40.50.300 7 226 4.0E-58 T 29-03-2018 Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 SUPERFAMILY SSF52540 24 101 3.19E-5 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 Pfam PF00270 DEAD/DEAH box helicase 25 199 3.8E-45 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS28810 f8ba29b5c225575f71efd9e50dd33143 637 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 564 50.64 T 29-03-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 Pfam PF13412 Winged helix-turn-helix DNA-binding 14 60 3.7E-23 T 29-03-2018 Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 Pfam PF01037 Lrp/AsnC ligand binding domain 80 155 1.9E-22 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 Gene3D G3DSA:1.10.10.10 8 64 2.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 Gene3D G3DSA:3.30.70.920 66 165 6.3E-26 T 29-03-2018 Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 ProSitePatterns PS00519 AsnC-type HTH domain signature. 32 58 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 SUPERFAMILY SSF46785 5 132 3.13E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 SMART SM00344 14 124 2.0E-43 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 41 3.2E-19 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 41 60 3.2E-19 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS18070 dd489196d53138eeafbe766819b3b55f 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 14 30 3.2E-19 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 SUPERFAMILY SSF55604 494 567 1.31E-8 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 Pfam PF02378 Phosphotransferase system, EIIC 14 303 2.8E-72 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 360 444 1.2E-14 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 7 457 3.7E-176 T 29-03-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 Gene3D G3DSA:3.30.1360.60 491 568 5.0E-13 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 Gene3D G3DSA:3.30.1360.60 383 460 9.3E-22 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 Pfam PF00367 phosphotransferase system, EIIB 496 527 1.2E-4 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 Pfam PF00367 phosphotransferase system, EIIB 390 418 9.0E-9 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 SUPERFAMILY SSF55604 385 459 3.4E-16 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Y880_RS16970 1118fa974bb9825e875f84ff9ab2aa13 570 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 398 415 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 SUPERFAMILY SSF53850 92 294 2.17E-36 T 29-03-2018 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 Gene3D G3DSA:3.40.190.10 94 179 6.7E-13 T 29-03-2018 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 4.8E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 SUPERFAMILY SSF46785 3 85 1.04E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 Pfam PF03466 LysR substrate binding domain 90 294 5.6E-33 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 Gene3D G3DSA:3.40.190.10 180 268 2.2E-24 T 29-03-2018 Y880_RS05765 e49ac9eaa572237f2283ae4a7908f2ef 304 Gene3D G3DSA:1.10.10.10 2 86 3.0E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 405 2.3E-12 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 SUPERFAMILY SSF52413 305 434 2.62E-25 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 Gene3D G3DSA:3.40.50.720 228 436 1.0E-43 T 29-03-2018 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 SMART SM00984 317 425 2.2E-19 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 Gene3D G3DSA:3.40.50.720 1 203 3.1E-45 T 29-03-2018 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 Gene3D G3DSA:1.20.5.170 204 227 1.5E-12 T 29-03-2018 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 298 2.2E-28 T 29-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 190 1.1E-65 T 29-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 SUPERFAMILY SSF51735 1 195 2.91E-51 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 410 3.2E-131 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 SUPERFAMILY SSF48179 204 300 7.48E-28 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 PIRSF PIRSF500135 1 436 2.2E-249 T 29-03-2018 IPR028358 GDP-mannose 6-dehydrogenase GO:0042121|GO:0047919 KEGG: 00040+1.1.1.13|KEGG: 00051+1.1.1.132|KEGG: 00520+1.1.1.132|MetaCyc: PWY-6073|MetaCyc: PWY-6082 Y880_RS15815 0d850c5342cefa0f63a3bc0fdbab94e5 436 PIRSF PIRSF000124 1 436 1.1E-145 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 433 1.0E-160 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 434 40.731 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 Pfam PF00815 Histidinol dehydrogenase 30 433 1.1E-168 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 368 386 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 207 232 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 327 352 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 143 169 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 258 277 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 177 203 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PRINTS PR00083 Histidinol dehydrogenase signature 236 257 2.7E-88 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 236 268 - T 29-03-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 Gene3D G3DSA:3.40.50.1980 233 378 9.8E-69 T 29-03-2018 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 SUPERFAMILY SSF53720 33 434 2.35E-86 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 PIRSF PIRSF000099 8 436 4.2E-159 T 29-03-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y880_RS20545 3913815ea0d82374a1dbb220ad719f22 440 Gene3D G3DSA:3.40.50.1980 32 232 1.9E-87 T 29-03-2018 Y880_RS19335 bfdaaa09a7eebe073dbd48706a134254 30 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 14 30 0.006 T 29-03-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y880_RS08475 3e63c25a602ed1e1a37023533c2ea178 239 Gene3D G3DSA:2.40.33.20 8 237 2.0E-57 T 29-03-2018 Y880_RS08475 3e63c25a602ed1e1a37023533c2ea178 239 Pfam PF03473 MOSC domain 51 164 2.1E-25 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y880_RS08475 3e63c25a602ed1e1a37023533c2ea178 239 Pfam PF03475 3-alpha domain 175 217 2.4E-13 T 29-03-2018 IPR005163 3-alpha domain Y880_RS08475 3e63c25a602ed1e1a37023533c2ea178 239 SUPERFAMILY SSF50800 8 228 4.13E-76 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 SUPERFAMILY SSF52304 4 145 1.27E-62 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 148 73.13 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 18 142 2.0E-61 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 PIRSF PIRSF001399 1 147 4.6E-63 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 29-03-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 142 6.6E-62 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 Gene3D G3DSA:3.40.50.9100 1 147 3.9E-66 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS27825 3099c1f9f66af573283a2fa2e540345a 148 Pfam PF01220 Dehydroquinase class II 5 140 1.2E-61 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS29250 22bde135cfc76473fe5ba13c9dbf58f7 171 Gene3D G3DSA:3.30.70.920 62 162 1.9E-12 T 29-03-2018 Y880_RS29250 22bde135cfc76473fe5ba13c9dbf58f7 171 Gene3D G3DSA:1.10.10.10 9 61 5.9E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 SUPERFAMILY SSF58104 260 567 1.03E-77 T 29-03-2018 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 Gene3D G3DSA:1.10.287.950 336 539 1.7E-54 T 29-03-2018 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 SMART SM00283 306 567 8.6E-81 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 SMART SM00304 239 291 5.8E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 SMART SM00304 326 386 13.0 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 433 462 3.3E-8 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 320 349 3.3E-8 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 351 534 3.1E-44 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 Gene3D G3DSA:1.10.287.950 119 335 1.0E-7 T 29-03-2018 Y880_RS10180 8777b8df1c6d3aed2ab7aaddf38011f2 568 Pfam PF00672 HAMP domain 239 278 1.2E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS27255 f48df482eaaaff8ac9096770d1b37901 113 Gene3D G3DSA:2.20.25.10 2 40 2.8E-19 T 29-03-2018 Y880_RS27255 f48df482eaaaff8ac9096770d1b37901 113 Pfam PF08274 PhnA Zinc-Ribbon 3 32 2.6E-17 T 29-03-2018 IPR013987 PhnA protein, N-terminal Y880_RS27255 f48df482eaaaff8ac9096770d1b37901 113 SUPERFAMILY SSF57783 3 37 2.13E-15 T 29-03-2018 Y880_RS27255 f48df482eaaaff8ac9096770d1b37901 113 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 112 2.5E-50 T 29-03-2018 IPR004624 PhnA protein Y880_RS27255 f48df482eaaaff8ac9096770d1b37901 113 Pfam PF03831 PhnA domain 46 113 6.3E-33 T 29-03-2018 IPR013988 PhnA protein, C-terminal Y880_RS27255 f48df482eaaaff8ac9096770d1b37901 113 Gene3D G3DSA:2.30.30.40 45 112 1.6E-36 T 29-03-2018 Y880_RS27255 f48df482eaaaff8ac9096770d1b37901 113 SUPERFAMILY SSF82057 41 113 9.16E-29 T 29-03-2018 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 2.4E-20 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Gene3D G3DSA:1.10.340.30 19 117 2.0E-24 T 29-03-2018 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 SMART SM00525 186 206 5.2E-5 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 3.2E-4 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 PIRSF PIRSF001435 1 212 2.3E-52 T 29-03-2018 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 SMART SM00478 38 185 1.8E-59 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 SUPERFAMILY SSF48150 3 208 1.88E-73 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.768 T 29-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 TIGRFAM TIGR01083 nth: endonuclease III 5 194 2.6E-86 T 29-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Pfam PF00633 Helix-hairpin-helix motif 100 127 7.1E-10 T 29-03-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Y880_RS15590 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Gene3D G3DSA:1.10.1670.10 118 212 1.2E-30 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Y880_RS22420 fbcc95252a1b661ab412b809b9cf8e8e 296 SUPERFAMILY SSF103481 187 290 5.62E-14 T 29-03-2018 Y880_RS22420 fbcc95252a1b661ab412b809b9cf8e8e 296 SUPERFAMILY SSF103481 44 145 1.7E-11 T 29-03-2018 Y880_RS22420 fbcc95252a1b661ab412b809b9cf8e8e 296 Pfam PF00892 EamA-like transporter family 15 141 1.5E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS22420 fbcc95252a1b661ab412b809b9cf8e8e 296 Pfam PF00892 EamA-like transporter family 152 284 6.4E-18 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 SUPERFAMILY SSF52374 3 199 4.22E-132 T 29-03-2018 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 SUPERFAMILY SSF52374 401 652 4.22E-132 T 29-03-2018 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 SUPERFAMILY SSF50677 201 401 5.76E-54 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Pfam PF08264 Anticodon-binding domain of tRNA 691 847 1.1E-27 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Gene3D G3DSA:3.40.50.620 389 646 1.4E-68 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 399 414 3.1E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 3.1E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 576 3.1E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 235 258 3.1E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 529 542 3.1E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 SUPERFAMILY SSF47323 658 934 2.43E-77 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 646 9.8E-197 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Gene3D G3DSA:3.30.2320.20 825 901 4.3E-22 T 29-03-2018 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Gene3D G3DSA:3.40.50.620 44 120 3.7E-28 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Gene3D G3DSA:1.10.730.10 647 824 1.2E-40 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Gene3D G3DSA:3.90.740.10 197 388 7.4E-59 T 29-03-2018 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 849 1.6E-276 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 934 21.211 T 29-03-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 Y880_RS21135 d63aad8cb8b2d53a5a7f1ca937940c07 943 Pfam PF06827 Zinc finger found in FPG and IleRS 905 931 1.8E-7 T 29-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Y880_RS16290 82ad9b3cab8e9740db15894802fe13ea 157 SUPERFAMILY SSF69765 1 155 5.63E-67 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y880_RS16290 82ad9b3cab8e9740db15894802fe13ea 157 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 29-03-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y880_RS16290 82ad9b3cab8e9740db15894802fe13ea 157 Gene3D G3DSA:3.30.1330.50 1 157 1.3E-74 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y880_RS16290 82ad9b3cab8e9740db15894802fe13ea 157 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.806 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y880_RS16290 82ad9b3cab8e9740db15894802fe13ea 157 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 155 4.2E-73 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y880_RS16290 82ad9b3cab8e9740db15894802fe13ea 157 Pfam PF02542 YgbB family 1 154 8.6E-68 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y880_RS18330 909c4e093bf9b478a653a1dc397889fd 213 SUPERFAMILY SSF51735 5 198 4.09E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18330 909c4e093bf9b478a653a1dc397889fd 213 Pfam PF08732 HIM1 57 156 3.3E-7 T 29-03-2018 IPR014843 Protein Him1/Fmp52 Y880_RS18330 909c4e093bf9b478a653a1dc397889fd 213 Gene3D G3DSA:3.40.50.720 1 213 1.2E-19 T 29-03-2018 Y880_RS25915 3f2b8cc504483102325bccebe446c9f9 375 SUPERFAMILY SSF53756 11 373 1.88E-65 T 29-03-2018 Y880_RS25915 3f2b8cc504483102325bccebe446c9f9 375 Pfam PF00534 Glycosyl transferases group 1 198 335 1.3E-25 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS25915 3f2b8cc504483102325bccebe446c9f9 375 Pfam PF13439 Glycosyltransferase Family 4 16 171 8.1E-9 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS25915 3f2b8cc504483102325bccebe446c9f9 375 Gene3D G3DSA:3.40.50.2000 156 366 2.2E-37 T 29-03-2018 Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 9 217 1.7E-52 T 29-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 103 183 6.6E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 189 1.9E-34 T 29-03-2018 IPR023214 HAD-like domain Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 Gene3D G3DSA:1.10.150.240 21 78 4.1E-18 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 Gene3D G3DSA:3.40.50.1000 79 225 2.0E-38 T 29-03-2018 IPR023214 HAD-like domain Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 6 220 35.587 T 29-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 SUPERFAMILY SSF56784 4 221 7.89E-62 T 29-03-2018 IPR023214 HAD-like domain Y880_RS13870 dcc59f8adca480a9da418e7d5162bccd 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 90 187 7.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 PRINTS PR00885 Bacterial general secretion pathway protein H signature 2 16 2.9E-12 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 PRINTS PR00885 Bacterial general secretion pathway protein H signature 17 31 2.9E-12 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 PRINTS PR00885 Bacterial general secretion pathway protein H signature 128 143 2.9E-12 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 2.4E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 3 149 2.1E-19 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 Pfam PF12019 Type II transport protein GspH 42 161 3.9E-10 T 29-03-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 Gene3D G3DSA:3.55.40.10 34 169 8.4E-33 T 29-03-2018 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 SUPERFAMILY SSF54523 7 89 4.55E-13 T 29-03-2018 Y880_RS13525 f27049841bc1d015f5f4fdf3ca35e290 172 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.1E-8 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS11565 a32f8f98ff7d1f7198a5e53e482826ad 87 Pfam PF14357 Domain of unknown function (DUF4404) 7 87 4.0E-27 T 29-03-2018 IPR025516 Protein of unknown function DUF4404 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 203 244 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 217 232 5.0E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 232 248 5.0E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 Gene3D G3DSA:1.10.10.60 205 250 6.8E-9 T 29-03-2018 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 Pfam PF12833 Helix-turn-helix domain 173 248 3.1E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 SUPERFAMILY SSF46689 203 248 1.7E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 Pfam PF02311 AraC-like ligand binding domain 12 109 1.2E-9 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 Gene3D G3DSA:1.10.10.60 146 204 1.4E-15 T 29-03-2018 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 SMART SM00342 166 248 3.8E-30 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 SUPERFAMILY SSF51182 6 181 8.34E-22 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS03065 7c44c39ae1d74ce48ddfbe12a317a5a9 260 Gene3D G3DSA:2.60.120.10 1 120 8.0E-12 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 SUPERFAMILY SSF46689 275 320 4.48E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 SMART SM00342 239 322 6.5E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 Gene3D G3DSA:1.10.10.60 280 329 1.2E-10 T 29-03-2018 Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 SUPERFAMILY SSF46689 223 273 9.86E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 Pfam PF06719 AraC-type transcriptional regulator N-terminus 60 210 1.2E-50 T 29-03-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 Pfam PF12833 Helix-turn-helix domain 245 319 1.2E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 Gene3D G3DSA:1.10.10.60 220 279 1.5E-17 T 29-03-2018 Y880_RS07405 134fe24af43019eb4af6a5feb774a55c 329 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 276 318 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS19155 0624a3c487fe6dcf862ebed54770e694 133 SUPERFAMILY SSF51316 1 132 1.15E-41 T 29-03-2018 IPR011057 Mss4-like Y880_RS19155 0624a3c487fe6dcf862ebed54770e694 133 Gene3D G3DSA:3.90.1590.10 1 133 6.1E-37 T 29-03-2018 Y880_RS19155 0624a3c487fe6dcf862ebed54770e694 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 116 1.7E-16 T 29-03-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y880_RS16285 0cef595c837e25958eb54720d17095ca 355 Gene3D G3DSA:3.30.2340.10 172 304 8.4E-26 T 29-03-2018 Y880_RS16285 0cef595c837e25958eb54720d17095ca 355 SUPERFAMILY SSF55120 13 342 1.73E-94 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS16285 0cef595c837e25958eb54720d17095ca 355 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 9 345 27.072 T 29-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS16285 0cef595c837e25958eb54720d17095ca 355 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 191 340 5.8E-18 T 29-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS16285 0cef595c837e25958eb54720d17095ca 355 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 23 172 7.0E-38 T 29-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS16285 0cef595c837e25958eb54720d17095ca 355 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 81 94 - T 29-03-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 Y880_RS17910 d3015c54ddfb0d0ed7e7c8bdd7f980b2 277 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 5 270 3.4E-67 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS17910 d3015c54ddfb0d0ed7e7c8bdd7f980b2 277 SUPERFAMILY SSF51197 3 277 1.33E-95 T 29-03-2018 Y880_RS17910 d3015c54ddfb0d0ed7e7c8bdd7f980b2 277 Gene3D G3DSA:3.60.130.10 1 277 9.3E-78 T 29-03-2018 Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 SMART SM00471 173 324 8.6E-7 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 Gene3D G3DSA:1.10.3210.10 134 365 2.2E-37 T 29-03-2018 Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 SUPERFAMILY SSF52172 13 160 1.2E-38 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 SMART SM00448 11 124 3.2E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 Gene3D G3DSA:3.40.50.2300 4 133 1.8E-35 T 29-03-2018 Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 Pfam PF13487 HD domain 236 305 5.6E-17 T 29-03-2018 Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 Pfam PF00072 Response regulator receiver domain 13 124 7.5E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22410 a3d1037e62e49be08076901e127af33c 393 SUPERFAMILY SSF109604 153 353 1.82E-26 T 29-03-2018 Y880_RS02210 5ab6de3b0b0977f1d6802cc232c1c012 249 Pfam PF00460 Flagella basal body rod protein 5 35 5.1E-6 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y880_RS02210 5ab6de3b0b0977f1d6802cc232c1c012 249 SUPERFAMILY SSF117143 78 207 7.59E-16 T 29-03-2018 Y880_RS02210 5ab6de3b0b0977f1d6802cc232c1c012 249 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 1.9E-31 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Y880_RS02210 5ab6de3b0b0977f1d6802cc232c1c012 249 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 226 2.5E-53 T 29-03-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 Y880_RS02210 5ab6de3b0b0977f1d6802cc232c1c012 249 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 239 4.3E-18 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y880_RS26785 f5860aed3d8b39563773aca1c9dd6119 75 Pfam PF06649 Protein of unknown function (DUF1161) 25 74 2.5E-24 T 29-03-2018 IPR010595 Protein of unknown function DUF1161 Y880_RS26785 f5860aed3d8b39563773aca1c9dd6119 75 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 3 75 3.0E-35 T 29-03-2018 IPR010595 Protein of unknown function DUF1161 Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 48 561 9.1E-207 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 SUPERFAMILY SSF69279 48 221 1.06E-62 T 29-03-2018 Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 SUPERFAMILY SSF69279 229 400 6.29E-35 T 29-03-2018 Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 Pfam PF05954 Phage late control gene D protein (GPD) 66 367 1.4E-102 T 29-03-2018 Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 59 543 2.5E-199 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 566 589 5.3E-5 T 29-03-2018 IPR010609 Gp5, C-terminal Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 SUPERFAMILY SSF69349 479 697 1.26E-55 T 29-03-2018 Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 Gene3D G3DSA:3.55.50.10 135 226 6.3E-33 T 29-03-2018 Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 Gene3D G3DSA:2.40.50.230 407 489 1.6E-39 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS10860 c9ad942215fe1f127135e6a307363223 726 SUPERFAMILY SSF69255 402 489 3.92E-35 T 29-03-2018 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 SUPERFAMILY SSF51246 328 423 2.04E-33 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 330 420 7.9E-30 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 102 295 2.2E-82 T 29-03-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Gene3D G3DSA:3.90.600.10 329 423 6.4E-36 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Gene3D G3DSA:3.40.50.20 2 94 3.4E-36 T 29-03-2018 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 SUPERFAMILY SSF52440 1 102 1.18E-34 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 422 1.2E-179 T 29-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Gene3D G3DSA:3.30.1490.20 133 188 1.5E-23 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 SMART SM01210 329 422 3.2E-55 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Gene3D G3DSA:3.30.470.20 190 328 1.7E-58 T 29-03-2018 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 422 43.447 T 29-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 SUPERFAMILY SSF56059 103 319 5.13E-64 T 29-03-2018 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 101 3.0E-33 T 29-03-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 SMART SM01209 102 295 1.9E-140 T 29-03-2018 Y880_RS22790 191d261ff75925ea4c630aead3620cd8 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 289 296 - T 29-03-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 545 5.3E-206 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 683 3.2E-245 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 683 25.437 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 241 256 2.6E-35 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 313 329 2.6E-35 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 2.6E-35 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 389 408 2.6E-35 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 2.6E-35 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 Gene3D G3DSA:1.10.730.10 571 677 5.2E-11 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 SUPERFAMILY SSF109604 334 485 2.04E-17 T 29-03-2018 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 Pfam PF05746 DALR anticodon binding domain 577 671 1.2E-6 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 SMART SM00836 580 683 0.0029 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y880_RS26625 713cb557cf4b126bb2c1b98476da62af 684 Gene3D G3DSA:1.10.3210.10 211 514 1.1E-6 T 29-03-2018 Y880_RS18275 2369378cd22fdc836ea01a6363ff6484 214 SUPERFAMILY SSF52374 1 211 3.75E-53 T 29-03-2018 Y880_RS18275 2369378cd22fdc836ea01a6363ff6484 214 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 7 210 1.1E-50 T 29-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Y880_RS18275 2369378cd22fdc836ea01a6363ff6484 214 Gene3D G3DSA:3.40.50.620 2 214 1.5E-59 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS18275 2369378cd22fdc836ea01a6363ff6484 214 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 68 1.5E-9 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS18275 2369378cd22fdc836ea01a6363ff6484 214 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 3 211 31.119 T 29-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Y880_RS18275 2369378cd22fdc836ea01a6363ff6484 214 Pfam PF01467 Cytidylyltransferase-like 7 184 6.9E-31 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS03740 da3ee53fffdac817662f929eb2b2aded 278 PIRSF PIRSF016184 3 278 1.6E-61 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS03740 da3ee53fffdac817662f929eb2b2aded 278 SUPERFAMILY SSF54506 4 276 1.57E-67 T 29-03-2018 Y880_RS03740 da3ee53fffdac817662f929eb2b2aded 278 Gene3D G3DSA:3.10.310.10 1 131 1.2E-27 T 29-03-2018 Y880_RS03740 da3ee53fffdac817662f929eb2b2aded 278 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 256 5.5E-51 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS03740 da3ee53fffdac817662f929eb2b2aded 278 Gene3D G3DSA:3.10.310.10 132 266 8.5E-36 T 29-03-2018 Y880_RS03740 da3ee53fffdac817662f929eb2b2aded 278 Pfam PF02567 Phenazine biosynthesis-like protein 10 256 2.5E-50 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 SMART SM00382 222 367 2.0E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 Pfam PF00158 Sigma-54 interaction domain 203 369 2.9E-64 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 SUPERFAMILY SSF55785 80 130 3.29E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:3.30.450.20 78 178 1.5E-6 T 29-03-2018 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 461 508 1.5E-24 T 29-03-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:3.40.50.300 196 374 1.1E-21 T 29-03-2018 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:3.30.70.260 1 77 2.2E-6 T 29-03-2018 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:1.10.8.60 376 447 4.7E-21 T 29-03-2018 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 Pfam PF13188 PAS domain 81 133 2.6E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 416 425 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 SUPERFAMILY SSF46689 456 508 2.45E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 226 239 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 SUPERFAMILY SSF52540 203 445 1.2E-66 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09605 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:1.10.10.60 449 508 5.6E-7 T 29-03-2018 Y880_RS04490 07c4964980d1706293e9224e826bc650 143 SUPERFAMILY SSF143744 2 136 2.22E-34 T 29-03-2018 Y880_RS04490 07c4964980d1706293e9224e826bc650 143 Gene3D G3DSA:2.30.130.10 13 56 0.0065 T 29-03-2018 IPR002478 PUA domain GO:0003723 Y880_RS04490 07c4964980d1706293e9224e826bc650 143 Pfam PF03928 Haem-degrading 4 133 8.3E-27 T 29-03-2018 IPR005624 Haem-degrading Y880_RS12335 14d59effcd50350519248831b04b1106 668 SUPERFAMILY SSF54001 270 600 7.85E-74 T 29-03-2018 Y880_RS12335 14d59effcd50350519248831b04b1106 668 Gene3D G3DSA:3.90.260.10 348 534 1.2E-20 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS12335 14d59effcd50350519248831b04b1106 668 Pfam PF01841 Transglutaminase-like superfamily 349 465 2.8E-23 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS12335 14d59effcd50350519248831b04b1106 668 SMART SM00460 396 467 3.2E-20 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS12335 14d59effcd50350519248831b04b1106 668 Pfam PF11992 Domain of unknown function (DUF3488) 9 321 8.1E-109 T 29-03-2018 IPR021878 Protein of unknown function DUF3488 Y880_RS12335 14d59effcd50350519248831b04b1106 668 Pfam PF13559 Domain of unknown function (DUF4129) 581 642 1.5E-10 T 29-03-2018 IPR025403 Domain of unknown function DUF4129 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 189 277 1.94E-27 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 104 185 8.95E-15 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.3E-88 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 1 91 3.8E-9 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 361 435 6.6E-21 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 274 348 2.2E-25 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 429 536 8.95E-24 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 1 112 1.33E-20 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 275 347 1.8E-26 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 362 434 9.7E-21 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 190 260 1.4E-28 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 449 520 2.6E-21 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 103 171 1.3E-8 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 19 87 2.0E-5 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.5E-220 T 29-03-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 342 440 7.46E-23 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 189 260 9.1E-22 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 448 520 1.1E-15 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 361 434 9.8E-19 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 103 171 1.8E-11 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 19 85 3.7E-7 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 275 347 2.0E-21 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 451 545 1.2E-20 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PIRSF PIRSF002111 1 386 2.0E-178 T 29-03-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 PIRSF PIRSF002111 384 551 1.4E-39 T 29-03-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 101 180 2.1E-7 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 181 266 1.3E-26 T 29-03-2018 Y880_RS13820 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 255 355 6.56E-26 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS07810 f900d30ce2ed9791df3f3eaa274d53a4 378 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 226 369 3.5E-22 T 29-03-2018 IPR019587 Polyketide cyclase/dehydrase Y880_RS07810 f900d30ce2ed9791df3f3eaa274d53a4 378 Gene3D G3DSA:3.30.530.20 218 378 1.8E-18 T 29-03-2018 IPR023393 START-like domain Y880_RS07810 f900d30ce2ed9791df3f3eaa274d53a4 378 SUPERFAMILY SSF55961 226 371 5.5E-17 T 29-03-2018 Y880_RS07810 f900d30ce2ed9791df3f3eaa274d53a4 378 Pfam PF04116 Fatty acid hydroxylase superfamily 60 213 1.5E-10 T 29-03-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 20 400 1.5E-144 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 SUPERFAMILY SSF53383 41 401 2.7E-123 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 Gene3D G3DSA:3.90.1150.10 269 403 1.3E-50 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 211 225 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 20 400 8.6E-205 T 29-03-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 PIRSF PIRSF001434 7 403 4.8E-135 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 Gene3D G3DSA:3.40.640.10 17 268 1.4E-63 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS13560 8fbbaf8a65853fdd7dca178c5a6109e6 403 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 21 401 55.072 T 29-03-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Gene3D G3DSA:1.20.58.310 55 157 3.3E-35 T 29-03-2018 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Gene3D G3DSA:3.30.1840.10 158 354 2.0E-60 T 29-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 53 726 4.3E-288 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Gene3D G3DSA:3.30.870.10 367 547 2.5E-21 T 29-03-2018 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 SUPERFAMILY SSF56024 548 727 1.32E-73 T 29-03-2018 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 PIRSF PIRSF015589 24 734 3.5E-288 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 SUPERFAMILY SSF143724 156 361 1.0E-61 T 29-03-2018 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Pfam PF13090 Polyphosphate kinase C-terminal domain 379 725 2.8E-153 T 29-03-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 SUPERFAMILY SSF140356 50 154 9.16E-37 T 29-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Pfam PF02503 Polyphosphate kinase middle domain 169 369 1.7E-63 T 29-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Gene3D G3DSA:3.30.870.10 548 732 2.2E-41 T 29-03-2018 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Pfam PF13089 Polyphosphate kinase N-terminal domain 53 158 2.0E-35 T 29-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 SUPERFAMILY SSF56024 362 544 1.54E-56 T 29-03-2018 Y880_RS24815 7b676ac5a22bbe7ee5b3e945edb67626 736 Hamap MF_00347 Polyphosphate kinase [ppk]. 51 730 29.658 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Y880_RS29745 66d94483da397e4f92f50c44fae48e39 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 3.9E-89 T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS29745 66d94483da397e4f92f50c44fae48e39 224 PIRSF PIRSF001461 1 224 3.1E-103 T 29-03-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS29745 66d94483da397e4f92f50c44fae48e39 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 216 4.6E-99 T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS29745 66d94483da397e4f92f50c44fae48e39 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS29745 66d94483da397e4f92f50c44fae48e39 224 SUPERFAMILY SSF51366 4 217 7.85E-76 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Y880_RS29745 66d94483da397e4f92f50c44fae48e39 224 Gene3D G3DSA:3.20.20.70 1 220 2.6E-86 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS29745 66d94483da397e4f92f50c44fae48e39 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 4 172 22.047 T 29-03-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 SMART SM00271 4 69 1.1E-7 T 29-03-2018 IPR001623 DnaJ domain Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 Pfam PF00226 DnaJ domain 19 73 5.5E-7 T 29-03-2018 IPR001623 DnaJ domain Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 Pfam PF07743 HSCB C-terminal oligomerisation domain 89 164 3.5E-16 T 29-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 SUPERFAMILY SSF47144 84 173 3.92E-23 T 29-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 Gene3D G3DSA:1.10.287.110 2 82 4.4E-10 T 29-03-2018 IPR001623 DnaJ domain Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 17 171 6.9E-30 T 29-03-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 SUPERFAMILY SSF46565 6 77 6.02E-17 T 29-03-2018 IPR001623 DnaJ domain Y880_RS17260 d86db32bade4d3ae220a4ae78da5ac41 173 Gene3D G3DSA:1.20.1280.20 86 172 4.3E-22 T 29-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Gene3D G3DSA:3.40.50.300 291 501 3.3E-30 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 6 197 1.1E-41 T 29-03-2018 IPR003111 Lon, substrate-binding domain Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 TIGRFAM TIGR00763 lon: endopeptidase La 8 766 3.3E-302 T 29-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 SMART SM00382 344 488 9.3E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 698 717 2.5E-54 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 590 606 2.5E-54 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 721 739 2.5E-54 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 352 371 2.5E-54 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 668 687 2.5E-54 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Gene3D G3DSA:2.30.130.40 2 114 9.3E-30 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Gene3D G3DSA:1.10.4060.10 119 207 1.2E-27 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 SUPERFAMILY SSF88697 6 197 4.72E-49 T 29-03-2018 IPR015947 PUA-like domain Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Gene3D G3DSA:1.10.8.60 502 571 1.1E-31 T 29-03-2018 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 SUPERFAMILY SSF54211 590 765 4.55E-58 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 PIRSF PIRSF001174 1 770 0.0 T 29-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 SUPERFAMILY SSF52540 309 581 6.88E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 565 767 1.1E-97 T 29-03-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 348 484 9.3E-19 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Hamap MF_01973 Lon protease [lon]. 7 767 71.453 T 29-03-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 SMART SM00464 6 198 5.2E-73 T 29-03-2018 IPR003111 Lon, substrate-binding domain Y880_RS06140 e3b82f29519787baf8b24a3ad64e9b26 798 Gene3D G3DSA:3.30.230.10 572 791 5.7E-67 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS14465 9701cf39b055d2875f522d2ae44965f3 284 Hamap MF_00697 UPF0276 protein . 9 277 45.456 T 29-03-2018 IPR007801 Uncharacterised protein family UPF0276 Y880_RS14465 9701cf39b055d2875f522d2ae44965f3 284 Gene3D G3DSA:3.20.20.150 4 280 2.5E-76 T 29-03-2018 Y880_RS14465 9701cf39b055d2875f522d2ae44965f3 284 Pfam PF05114 Protein of unknown function (DUF692) 8 269 8.6E-98 T 29-03-2018 IPR007801 Uncharacterised protein family UPF0276 Y880_RS14465 9701cf39b055d2875f522d2ae44965f3 284 SUPERFAMILY SSF51658 39 236 2.36E-5 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 284 772 7.7E-68 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 7 89 5.4E-28 T 29-03-2018 IPR021993 Putative metal-binding domain of cation transport ATPase Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Pfam PF00702 haloacid dehalogenase-like hydrolase 504 708 8.9E-33 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF81665 262 309 4.71E-8 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF81665 411 501 4.71E-8 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:3.30.70.100 91 158 4.2E-15 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF55008 87 164 6.68E-17 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 276 797 4.6E-113 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 248 796 2.8E-154 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:3.40.1110.10 521 659 1.1E-23 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00941 Cadmium-transporting ATPase signature 97 106 4.7E-5 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00941 Cadmium-transporting ATPase signature 376 392 4.7E-5 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00941 Cadmium-transporting ATPase signature 108 129 4.7E-5 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF56784 558 794 3.49E-50 T 29-03-2018 IPR023214 HAD-like domain Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF56784 506 526 3.49E-50 T 29-03-2018 IPR023214 HAD-like domain Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 651 5.0E-21 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 717 729 5.0E-21 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 694 713 5.0E-21 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 508 522 5.0E-21 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 360 374 5.0E-21 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:1.20.1110.10 159 520 3.4E-36 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Pfam PF00403 Heavy-metal-associated domain 97 156 1.1E-8 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 510 516 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Pfam PF00122 E1-E2 ATPase 310 487 1.0E-47 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 231 796 2.6E-139 T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF81653 323 409 3.4E-22 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 ProSitePatterns PS01229 Hypothetical cof family signature 2. 694 716 - T 29-03-2018 Y880_RS04760 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:1.20.1110.10 660 795 9.2E-26 T 29-03-2018 Y880_RS27700 1b8e9d25eddef58dab957b2ee7d94c94 477 PIRSF PIRSF006060 2 472 7.7E-82 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS27700 1b8e9d25eddef58dab957b2ee7d94c94 477 Pfam PF13520 Amino acid permease 21 411 2.3E-38 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS02135 aee0ad4f35713bee653979cb00b9ae21 304 Gene3D G3DSA:3.40.190.10 176 263 2.1E-25 T 29-03-2018 Y880_RS02135 aee0ad4f35713bee653979cb00b9ae21 304 SUPERFAMILY SSF53850 91 295 1.03E-39 T 29-03-2018 Y880_RS02135 aee0ad4f35713bee653979cb00b9ae21 304 SUPERFAMILY SSF46785 3 87 6.99E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02135 aee0ad4f35713bee653979cb00b9ae21 304 Pfam PF03466 LysR substrate binding domain 88 292 2.7E-39 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS02135 aee0ad4f35713bee653979cb00b9ae21 304 Gene3D G3DSA:1.10.10.10 2 84 3.5E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02135 aee0ad4f35713bee653979cb00b9ae21 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.0E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02135 aee0ad4f35713bee653979cb00b9ae21 304 Gene3D G3DSA:3.40.190.10 89 175 3.8E-14 T 29-03-2018 Y880_RS15685 d91fb5881bf4de36ebfeaec6b486c650 283 Pfam PF00005 ABC transporter 49 187 1.1E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS15685 d91fb5881bf4de36ebfeaec6b486c650 283 SMART SM00382 57 238 8.8E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS15685 d91fb5881bf4de36ebfeaec6b486c650 283 SUPERFAMILY SSF52540 27 246 7.43E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15685 d91fb5881bf4de36ebfeaec6b486c650 283 Gene3D G3DSA:3.40.50.300 23 254 1.1E-57 T 29-03-2018 Y880_RS15685 d91fb5881bf4de36ebfeaec6b486c650 283 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS18480 d740b9d5924abb0a9f87c3984b7255c9 214 Gene3D G3DSA:2.40.70.10 92 202 1.7E-18 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS18480 d740b9d5924abb0a9f87c3984b7255c9 214 SUPERFAMILY SSF50630 98 201 3.5E-20 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS18480 d740b9d5924abb0a9f87c3984b7255c9 214 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 117 128 - T 29-03-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 Y880_RS18480 d740b9d5924abb0a9f87c3984b7255c9 214 Pfam PF13975 gag-polyprotein putative aspartyl protease 107 198 1.2E-26 T 29-03-2018 Y880_RS18480 d740b9d5924abb0a9f87c3984b7255c9 214 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 94 211 1.4E-42 T 29-03-2018 IPR011969 Clan AA aspartic peptidase, C-terminal Y880_RS01650 7fa3ce9e7b30b34ab7c3b40d2c69fb37 148 SUPERFAMILY SSF54637 8 137 1.45E-41 T 29-03-2018 IPR029069 HotDog domain Y880_RS01650 7fa3ce9e7b30b34ab7c3b40d2c69fb37 148 PIRSF PIRSF003230 3 142 1.1E-44 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y880_RS01650 7fa3ce9e7b30b34ab7c3b40d2c69fb37 148 Pfam PF03061 Thioesterase superfamily 24 107 2.3E-17 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS01650 7fa3ce9e7b30b34ab7c3b40d2c69fb37 148 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 10 135 4.7E-48 T 29-03-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 Y880_RS01650 7fa3ce9e7b30b34ab7c3b40d2c69fb37 148 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 13 130 5.5E-33 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y880_RS01650 7fa3ce9e7b30b34ab7c3b40d2c69fb37 148 Gene3D G3DSA:3.10.129.10 2 140 1.2E-38 T 29-03-2018 Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 Pfam PF13602 Zinc-binding dehydrogenase 194 334 2.9E-24 T 29-03-2018 Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 89 3.0E-6 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 SUPERFAMILY SSF51735 117 287 1.12E-37 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 Gene3D G3DSA:3.40.50.720 144 300 6.1E-23 T 29-03-2018 Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 Gene3D G3DSA:3.90.180.10 1 143 1.9E-34 T 29-03-2018 Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 337 2.5E-177 T 29-03-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 SMART SM00829 16 334 7.3E-12 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 SUPERFAMILY SSF50129 9 137 1.48E-33 T 29-03-2018 IPR011032 GroES-like Y880_RS15960 191d53dad0755775ed02a51c760d4d4c 337 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 150 171 - T 29-03-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Y880_RS06990 e0a65917c910a9719d96f836dd10c537 123 Gene3D G3DSA:3.30.429.10 1 122 9.7E-33 T 29-03-2018 Y880_RS06990 e0a65917c910a9719d96f836dd10c537 123 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 117 7.4E-6 T 29-03-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 Y880_RS06990 e0a65917c910a9719d96f836dd10c537 123 SUPERFAMILY SSF55331 2 122 5.68E-31 T 29-03-2018 IPR014347 Tautomerase/MIF superfamily Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 SUPERFAMILY SSF88723 12 74 5.3E-17 T 29-03-2018 IPR029060 PIN domain-like Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 SUPERFAMILY SSF88723 110 161 5.3E-17 T 29-03-2018 IPR029060 PIN domain-like Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 Pfam PF02562 PhoH-like protein 254 450 1.4E-45 T 29-03-2018 IPR003714 PhoH-like protein GO:0005524 Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 Pfam PF13638 PIN domain 15 160 2.0E-39 T 29-03-2018 IPR002716 PIN domain Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 SMART SM00670 13 147 4.8E-10 T 29-03-2018 IPR002716 PIN domain Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 Gene3D G3DSA:3.40.50.1010 11 223 1.9E-36 T 29-03-2018 IPR029060 PIN domain-like Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 Gene3D G3DSA:3.40.50.300 252 456 2.5E-18 T 29-03-2018 Y880_RS17820 6094d8df2798aa55a7786a580c2f1742 463 SUPERFAMILY SSF52540 208 442 1.64E-28 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS29055 4699a705272f5b657a1078c46eb324da 249 Gene3D G3DSA:1.20.1050.10 93 235 1.4E-17 T 29-03-2018 Y880_RS29055 4699a705272f5b657a1078c46eb324da 249 SUPERFAMILY SSF47616 78 205 1.99E-16 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS29055 4699a705272f5b657a1078c46eb324da 249 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 80 9.4E-21 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS29055 4699a705272f5b657a1078c46eb324da 249 Gene3D G3DSA:3.40.30.10 3 92 4.5E-24 T 29-03-2018 Y880_RS29055 4699a705272f5b657a1078c46eb324da 249 SUPERFAMILY SSF52833 5 104 1.06E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS13650 e50ce94ed3ff666a8afc727d1800ada6 442 Gene3D G3DSA:3.40.50.1110 206 428 1.7E-31 T 29-03-2018 Y880_RS13650 e50ce94ed3ff666a8afc727d1800ada6 442 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 218 413 2.6E-26 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS13650 e50ce94ed3ff666a8afc727d1800ada6 442 SUPERFAMILY SSF52266 212 419 1.18E-50 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS10605 6ab86feb224a51179bda043ce2ef2b5a 137 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 26 123 1.0E-33 T 29-03-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10605 6ab86feb224a51179bda043ce2ef2b5a 137 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 124 20.119 T 29-03-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 PRINTS PR00050 Cold shock protein signature 26 35 1.7E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 PRINTS PR00050 Cold shock protein signature 6 21 1.7E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 PRINTS PR00050 Cold shock protein signature 41 59 1.7E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 35 - T 29-03-2018 IPR019844 Cold-shock conserved site Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 PIRSF PIRSF002599 1 69 1.5E-23 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 67 4.6E-29 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 Gene3D G3DSA:2.40.50.140 1 69 9.5E-29 T 29-03-2018 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 SMART SM00357 5 68 3.6E-29 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 Y880_RS28955 9e2e5c27e8b6374fe031d2d06ee26562 69 SUPERFAMILY SSF50249 3 68 4.41E-25 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 6.9E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 Pfam PF03466 LysR substrate binding domain 93 296 7.4E-32 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 SUPERFAMILY SSF46785 2 82 4.03E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 Gene3D G3DSA:1.10.10.10 1 87 1.1E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 SUPERFAMILY SSF53850 90 295 7.6E-50 T 29-03-2018 Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 Gene3D G3DSA:3.40.190.10 182 267 2.8E-16 T 29-03-2018 Y880_RS10125 d853f3452c1fbca8f6a7548a145eaddd 310 Gene3D G3DSA:3.40.190.10 94 181 2.3E-17 T 29-03-2018 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 8.6E-15 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 8.6E-15 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 8.6E-15 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 8.6E-15 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 SMART SM01130 2 290 1.9E-90 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 1.2E-55 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 Gene3D G3DSA:3.20.20.70 1 300 1.6E-82 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 PIRSF PIRSF001365 1 299 7.2E-81 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS19215 f6ab9b5e47933d5310cefca35af980e5 303 SUPERFAMILY SSF51569 2 289 7.64E-84 T 29-03-2018 Y880_RS23475 cf96aa3bfdea8d3de434929ee149a5ff 425 SUPERFAMILY SSF53756 54 413 3.18E-18 T 29-03-2018 Y880_RS23475 cf96aa3bfdea8d3de434929ee149a5ff 425 Gene3D G3DSA:3.40.50.2000 211 405 4.0E-17 T 29-03-2018 Y880_RS23475 cf96aa3bfdea8d3de434929ee149a5ff 425 Pfam PF00534 Glycosyl transferases group 1 294 401 2.9E-6 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS23475 cf96aa3bfdea8d3de434929ee149a5ff 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 210 1.1E-66 T 29-03-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Y880_RS08510 48da4403a472e4751fa186c3e45aedb2 662 Gene3D G3DSA:3.40.50.300 508 662 7.1E-5 T 29-03-2018 Y880_RS08510 48da4403a472e4751fa186c3e45aedb2 662 Pfam PF13807 G-rich domain on putative tyrosine kinase 403 479 1.7E-6 T 29-03-2018 IPR032807 Tyrosine kinase, G-rich domain Y880_RS08510 48da4403a472e4751fa186c3e45aedb2 662 Gene3D G3DSA:3.30.1890.10 36 457 1.2E-11 T 29-03-2018 Y880_RS01765 76c2e8539c8f842db718ff4ba138110a 348 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 253 341 7.4E-21 T 29-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS01765 76c2e8539c8f842db718ff4ba138110a 348 Gene3D G3DSA:3.40.47.10 229 345 8.9E-24 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01765 76c2e8539c8f842db718ff4ba138110a 348 SUPERFAMILY SSF53901 7 342 2.46E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01765 76c2e8539c8f842db718ff4ba138110a 348 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 124 200 1.8E-18 T 29-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS01765 76c2e8539c8f842db718ff4ba138110a 348 Gene3D G3DSA:3.40.47.10 2 228 1.4E-24 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 Pfam PF09339 IclR helix-turn-helix domain 35 86 2.2E-14 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 SUPERFAMILY SSF55781 98 277 6.38E-49 T 29-03-2018 IPR029016 GAF domain-like Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 30 276 4.2E-101 T 29-03-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 Gene3D G3DSA:1.10.10.10 26 100 1.2E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 SMART SM00346 33 121 3.0E-33 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 SUPERFAMILY SSF46785 34 105 4.76E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 Pfam PF01614 Bacterial transcriptional regulator 151 275 4.2E-37 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS27400 8aac29ba7cd8ad8521a7835210102b9a 279 Gene3D G3DSA:3.30.450.40 101 279 1.7E-52 T 29-03-2018 IPR029016 GAF domain-like Y880_RS17800 d900c1057b0938dad8db20c1bd800a4a 185 SMART SM00852 15 159 7.7E-27 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17800 d900c1057b0938dad8db20c1bd800a4a 185 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 13 152 4.6E-32 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17800 d900c1057b0938dad8db20c1bd800a4a 185 PIRSF PIRSF006443 1 167 6.4E-59 T 29-03-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 Y880_RS17800 d900c1057b0938dad8db20c1bd800a4a 185 SUPERFAMILY SSF53218 8 169 2.75E-44 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17800 d900c1057b0938dad8db20c1bd800a4a 185 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 8 170 1.6E-83 T 29-03-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 Y880_RS17800 d900c1057b0938dad8db20c1bd800a4a 185 Gene3D G3DSA:3.40.980.10 4 172 2.6E-31 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17800 d900c1057b0938dad8db20c1bd800a4a 185 Pfam PF00994 Probable molybdopterin binding domain 15 156 1.7E-30 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS09320 aa524688d0b136ebebb16c00d06aa988 448 SUPERFAMILY SSF51556 360 443 5.44E-77 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS09320 aa524688d0b136ebebb16c00d06aa988 448 SUPERFAMILY SSF51556 42 303 5.44E-77 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS09320 aa524688d0b136ebebb16c00d06aa988 448 Gene3D G3DSA:3.20.20.140 40 447 1.5E-91 T 29-03-2018 Y880_RS09320 aa524688d0b136ebebb16c00d06aa988 448 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 49 436 4.8E-106 T 29-03-2018 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 Y880_RS29150 4e4d3fdcc1c874a19e109b4c17917e38 252 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 40.793 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF Y880_RS29150 4e4d3fdcc1c874a19e109b4c17917e38 252 Gene3D G3DSA:3.20.20.370 3 250 3.0E-95 T 29-03-2018 Y880_RS29150 4e4d3fdcc1c874a19e109b4c17917e38 252 SUPERFAMILY SSF88713 3 249 2.15E-88 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS29150 4e4d3fdcc1c874a19e109b4c17917e38 252 Pfam PF03746 LamB/YcsF family 4 242 3.4E-90 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 SMART SM00490 311 411 1.6E-15 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 SMART SM00382 87 391 9.2E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 Pfam PF04408 Helicase associated domain (HA2) 474 558 8.2E-20 T 29-03-2018 IPR007502 Helicase-associated domain GO:0004386 Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 Gene3D G3DSA:3.40.50.300 71 229 1.2E-28 T 29-03-2018 Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 Pfam PF00271 Helicase conserved C-terminal domain 294 410 1.5E-11 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 SUPERFAMILY SSF52540 74 591 2.14E-104 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 647 723 7.5E-22 T 29-03-2018 IPR011709 Domain of unknown function DUF1605 Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 SMART SM00487 69 254 3.7E-24 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 SMART SM00847 471 561 5.9E-37 T 29-03-2018 IPR007502 Helicase-associated domain GO:0004386 Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 Gene3D G3DSA:3.40.50.300 248 430 1.9E-44 T 29-03-2018 Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 Pfam PF11898 Domain of unknown function (DUF3418) 736 1323 1.9E-201 T 29-03-2018 IPR024590 RNA helicase HrpA, C-terminal Y880_RS14540 3822bddf10ce662fbcf6a7428c8d29f5 1326 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 13 1323 0.0 T 29-03-2018 IPR010222 RNA helicase HrpA GO:0004004 Y880_RS19460 6612f1505ad78f0c94ed2173877365bd 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 29-03-2018 IPR018102 Ribosomal S11, conserved site Y880_RS19460 6612f1505ad78f0c94ed2173877365bd 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 9.2E-56 T 29-03-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19460 6612f1505ad78f0c94ed2173877365bd 129 Pfam PF00411 Ribosomal protein S11 19 128 2.2E-51 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Y880_RS19460 6612f1505ad78f0c94ed2173877365bd 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.706 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Y880_RS19460 6612f1505ad78f0c94ed2173877365bd 129 Gene3D G3DSA:3.30.420.80 5 129 3.3E-45 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Y880_RS19460 6612f1505ad78f0c94ed2173877365bd 129 SUPERFAMILY SSF53137 15 129 2.09E-47 T 29-03-2018 Y880_RS19460 6612f1505ad78f0c94ed2173877365bd 129 PIRSF PIRSF002131 1 129 1.7E-53 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 Pfam PF03466 LysR substrate binding domain 87 273 6.9E-22 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 Gene3D G3DSA:3.40.190.10 77 203 3.0E-15 T 29-03-2018 Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.1E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 SUPERFAMILY SSF53850 87 275 1.72E-24 T 29-03-2018 Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 Gene3D G3DSA:1.10.10.10 1 76 4.8E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06410 cd5db7e6d2d4537063c7c3993f237a43 287 SUPERFAMILY SSF46785 1 109 1.27E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01910 2c6d5e6e3b9fe8e8c44801730ccbc1af 328 SUPERFAMILY SSF51412 5 318 1.27E-66 T 29-03-2018 Y880_RS01910 2c6d5e6e3b9fe8e8c44801730ccbc1af 328 Gene3D G3DSA:3.20.20.70 3 322 1.4E-62 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS01910 2c6d5e6e3b9fe8e8c44801730ccbc1af 328 Pfam PF03060 Nitronate monooxygenase 6 311 2.2E-53 T 29-03-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 Gene3D G3DSA:1.10.10.60 241 283 1.2E-8 T 29-03-2018 Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 Gene3D G3DSA:1.10.10.60 284 339 1.4E-11 T 29-03-2018 Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 SUPERFAMILY SSF52317 15 205 4.07E-48 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 277 319 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 Pfam PF12833 Helix-turn-helix domain 246 324 1.3E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 SUPERFAMILY SSF46689 224 274 2.15E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 Pfam PF01965 DJ-1/PfpI family 20 183 9.3E-18 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 Gene3D G3DSA:3.40.50.880 11 240 1.1E-49 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 SMART SM00342 240 323 9.5E-29 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25550 acd9a8eeb529fb490c74ac7580ba1bac 367 SUPERFAMILY SSF46689 276 325 8.06E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 PIRSF PIRSF000171 1 561 4.4E-234 T 29-03-2018 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.7E-10 T 29-03-2018 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 1.7E-10 T 29-03-2018 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 370 377 2.8E-6 T 29-03-2018 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 2.8E-6 T 29-03-2018 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 Gene3D G3DSA:4.10.80.40 517 559 5.7E-4 T 29-03-2018 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 Gene3D G3DSA:3.50.50.60 1 423 5.2E-56 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 SUPERFAMILY SSF51905 4 260 3.71E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 SUPERFAMILY SSF51905 356 407 3.71E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 SUPERFAMILY SSF46977 425 552 3.14E-37 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 Pfam PF02910 Fumarate reductase flavoprotein C-term 440 541 4.5E-13 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 Pfam PF00890 FAD binding domain 9 378 6.7E-37 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS08835 68c3a7e00f2f277555ca7b9d7c0bd960 574 Gene3D G3DSA:1.20.58.100 424 516 1.6E-20 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS03430 106cfaec7969c6f80029b25f3a08d723 257 Gene3D G3DSA:3.60.20.10 1 257 2.1E-40 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS03430 106cfaec7969c6f80029b25f3a08d723 257 Pfam PF13230 Glutamine amidotransferases class-II 1 254 7.0E-107 T 29-03-2018 IPR026869 Putative glutamine amidotransferase type 2 Y880_RS03430 106cfaec7969c6f80029b25f3a08d723 257 SUPERFAMILY SSF56235 2 251 8.93E-49 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 Pfam PF14559 Tetratricopeptide repeat 129 195 5.5E-11 T 29-03-2018 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 TIGRFAM TIGR01068 thioredoxin: thioredoxin 13 110 1.7E-30 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 PRINTS PR00421 Thioredoxin family signature 36 45 1.5E-7 T 29-03-2018 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 PRINTS PR00421 Thioredoxin family signature 28 36 1.5E-7 T 29-03-2018 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 PRINTS PR00421 Thioredoxin family signature 76 87 1.5E-7 T 29-03-2018 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 Gene3D G3DSA:1.25.40.10 207 289 0.0013 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 Gene3D G3DSA:1.25.40.10 127 201 1.7E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 Gene3D G3DSA:3.40.30.10 4 126 1.9E-32 T 29-03-2018 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 Pfam PF14561 Tetratricopeptide repeat 200 289 4.4E-27 T 29-03-2018 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 SUPERFAMILY SSF52833 5 113 7.72E-37 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 SUPERFAMILY SSF48452 225 247 6.64E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 SUPERFAMILY SSF48452 125 190 6.64E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 ProSitePatterns PS00194 Thioredoxin family active site. 29 47 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS18545 137ef78d654d7e8d2dbc0701bf04a352 289 Pfam PF00085 Thioredoxin 9 109 1.8E-27 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 SUPERFAMILY SSF51215 21 144 2.48E-15 T 29-03-2018 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 SMART SM00342 177 259 7.2E-30 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 Pfam PF02311 AraC-like ligand binding domain 12 141 1.8E-21 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 Gene3D G3DSA:1.10.10.60 215 264 1.9E-11 T 29-03-2018 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 SUPERFAMILY SSF46689 161 211 8.51E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 167 206 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 SUPERFAMILY SSF46689 213 261 4.48E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 Gene3D G3DSA:1.10.10.60 166 214 1.6E-12 T 29-03-2018 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 Pfam PF12833 Helix-turn-helix domain 183 260 9.6E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS28745 a14dad603266809511c8e891166f48f0 264 Gene3D G3DSA:2.60.120.280 5 165 6.2E-8 T 29-03-2018 Y880_RS13845 a30c261c0313c31cacf44c22cbc5d88b 361 Gene3D G3DSA:3.40.640.10 17 258 2.7E-26 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS13845 a30c261c0313c31cacf44c22cbc5d88b 361 Gene3D G3DSA:3.90.1150.10 259 359 3.2E-37 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS13845 a30c261c0313c31cacf44c22cbc5d88b 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 3 360 51.871 T 29-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Y880_RS13845 a30c261c0313c31cacf44c22cbc5d88b 361 Pfam PF00266 Aminotransferase class-V 6 349 1.9E-49 T 29-03-2018 IPR000192 Aminotransferase class V domain Y880_RS13845 a30c261c0313c31cacf44c22cbc5d88b 361 PIRSF PIRSF000525 1 361 3.4E-151 T 29-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Y880_RS13845 a30c261c0313c31cacf44c22cbc5d88b 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 6 360 1.8E-166 T 29-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Y880_RS13845 a30c261c0313c31cacf44c22cbc5d88b 361 SUPERFAMILY SSF53383 4 359 1.64E-117 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS27545 973372e972f792917fb35cdc56fa663d 279 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS27545 973372e972f792917fb35cdc56fa663d 279 SMART SM00382 42 223 2.6E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS27545 973372e972f792917fb35cdc56fa663d 279 SUPERFAMILY SSF52540 14 253 1.04E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS27545 973372e972f792917fb35cdc56fa663d 279 Gene3D G3DSA:3.40.50.300 10 235 1.8E-61 T 29-03-2018 Y880_RS27545 973372e972f792917fb35cdc56fa663d 279 Pfam PF00005 ABC transporter 34 172 1.8E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS21305 7aa0dbba85fde10263cbba04a8a0f324 397 Pfam PF02687 FtsX-like permease family 302 390 2.6E-10 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y880_RS21305 7aa0dbba85fde10263cbba04a8a0f324 397 Gene3D G3DSA:1.20.1250.20 14 382 1.8E-5 T 29-03-2018 Y880_RS21305 7aa0dbba85fde10263cbba04a8a0f324 397 Pfam PF12704 MacB-like periplasmic core domain 25 239 2.6E-21 T 29-03-2018 IPR025857 MacB-like periplasmic core domain Y880_RS01955 fd7f790aece9480e6e3a73ece6cdd136 847 Gene3D G3DSA:1.10.439.10 30 189 1.0E-43 T 29-03-2018 IPR023343 Penicillin amidase type, domain1 GO:0016811 Y880_RS01955 fd7f790aece9480e6e3a73ece6cdd136 847 PIRSF PIRSF001227 17 842 5.6E-165 T 29-03-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y880_RS01955 fd7f790aece9480e6e3a73ece6cdd136 847 Gene3D G3DSA:3.60.20.10 265 643 6.4E-91 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS01955 fd7f790aece9480e6e3a73ece6cdd136 847 Gene3D G3DSA:3.60.20.10 644 836 6.4E-28 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS01955 fd7f790aece9480e6e3a73ece6cdd136 847 Pfam PF01804 Penicillin amidase 56 833 6.3E-197 T 29-03-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y880_RS01955 fd7f790aece9480e6e3a73ece6cdd136 847 SUPERFAMILY SSF56235 52 840 2.11E-206 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS17065 3ce14fe8589e425d8e108ff2d49550ab 385 Gene3D G3DSA:1.20.1250.20 14 206 1.2E-13 T 29-03-2018 Y880_RS17065 3ce14fe8589e425d8e108ff2d49550ab 385 SUPERFAMILY SSF103473 18 385 2.35E-33 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS17065 3ce14fe8589e425d8e108ff2d49550ab 385 Pfam PF07690 Major Facilitator Superfamily 32 348 1.2E-10 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS17065 3ce14fe8589e425d8e108ff2d49550ab 385 Gene3D G3DSA:1.20.1250.20 207 385 1.9E-10 T 29-03-2018 Y880_RS11545 6af0970088af234871bcda7d5ee878d8 134 Gene3D G3DSA:3.10.129.10 5 134 1.7E-30 T 29-03-2018 Y880_RS11545 6af0970088af234871bcda7d5ee878d8 134 SUPERFAMILY SSF54637 5 133 1.93E-31 T 29-03-2018 IPR029069 HotDog domain Y880_RS11545 6af0970088af234871bcda7d5ee878d8 134 Pfam PF13279 Thioesterase-like superfamily 14 133 2.1E-14 T 29-03-2018 Y880_RS00435 77beb0ece776f0d1a5e083861cec6711 316 Pfam PF03888 MucB/RseB N-terminal domain 23 194 1.8E-55 T 29-03-2018 IPR033434 MucB/RseB, N-terminal Y880_RS00435 77beb0ece776f0d1a5e083861cec6711 316 Pfam PF17188 MucB/RseB C-terminal domain 210 309 9.5E-24 T 29-03-2018 IPR033436 MucB/RseB, C-terminal Y880_RS00435 77beb0ece776f0d1a5e083861cec6711 316 Gene3D G3DSA:2.50.20.10 16 213 8.7E-25 T 29-03-2018 Y880_RS00435 77beb0ece776f0d1a5e083861cec6711 316 PIRSF PIRSF005427 1 315 2.1E-97 T 29-03-2018 IPR005588 MucB/RseB Y880_RS06455 bf78ea211c0a560525b583670b440deb 226 SUPERFAMILY SSF161098 5 216 9.94E-47 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS06455 bf78ea211c0a560525b583670b440deb 226 Gene3D G3DSA:1.10.3720.10 3 222 4.9E-34 T 29-03-2018 Y880_RS06455 bf78ea211c0a560525b583670b440deb 226 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 217 1.6E-71 T 29-03-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 Y880_RS06455 bf78ea211c0a560525b583670b440deb 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 215 3.7E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 Gene3D G3DSA:1.20.1640.10 91 292 2.0E-29 T 29-03-2018 Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 SUPERFAMILY SSF82866 70 286 4.32E-38 T 29-03-2018 Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 PRINTS PR01755 Bacterial translocase SecF protein signature 35 50 2.6E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 PRINTS PR01755 Bacterial translocase SecF protein signature 147 161 2.6E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 PRINTS PR01755 Bacterial translocase SecF protein signature 195 213 2.6E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 PRINTS PR01755 Bacterial translocase SecF protein signature 227 242 2.6E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 8 290 28.186 T 29-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 Pfam PF07549 SecD/SecF GG Motif 31 57 1.7E-12 T 29-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 36 279 9.7E-80 T 29-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 92 276 1.4E-54 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y880_RS17305 29c6769fa5086076a5ebf6afd8752ba2 306 Pfam PF02355 Protein export membrane protein 111 287 4.5E-64 T 29-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Pfam PF01807 CHC2 zinc finger 6 101 9.9E-42 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Gene3D G3DSA:3.90.580.10 1 103 1.5E-36 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 SUPERFAMILY SSF117023 525 654 7.85E-27 T 29-03-2018 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Hamap MF_00974 DNA primase [dnaG]. 4 655 30.062 T 29-03-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 SUPERFAMILY SSF56731 117 427 7.19E-110 T 29-03-2018 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Gene3D G3DSA:1.10.860.10 512 658 1.0E-28 T 29-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Pfam PF10410 DnaB-helicase binding domain of primase 374 426 1.3E-8 T 29-03-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 SMART SM00493 262 333 2.8E-21 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Gene3D G3DSA:1.20.50.20 377 421 8.5E-17 T 29-03-2018 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 SUPERFAMILY SSF57783 4 101 1.7E-37 T 29-03-2018 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Gene3D G3DSA:3.90.980.10 110 243 5.7E-48 T 29-03-2018 IPR013264 DNA primase, catalytic core, N-terminal Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Pfam PF08278 DNA primase DnaG DnaB-binding 529 652 3.4E-23 T 29-03-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 SMART SM00766 526 654 9.3E-34 T 29-03-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Pfam PF13662 Toprim domain 262 331 1.6E-17 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 255 5.4E-43 T 29-03-2018 IPR013264 DNA primase, catalytic core, N-terminal Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 Gene3D G3DSA:3.40.1360.20 258 376 1.1E-34 T 29-03-2018 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 TIGRFAM TIGR01391 dnaG: DNA primase 5 421 5.0E-147 T 29-03-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 Y880_RS29595 23b242240f65345033c5712e3ca4ace8 664 SMART SM00400 36 90 1.8E-34 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 Pfam PF00196 Bacterial regulatory proteins, luxR family 180 234 1.3E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 TIGRFAM TIGR03541 reg_near_HchA: LuxR family transcriptional regulatory, chaperone HchA-associated 5 241 1.3E-109 T 29-03-2018 IPR019941 Transcription regulator LuxR, chaperone HchA-associated Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 Gene3D G3DSA:3.30.450.80 1 185 6.1E-25 T 29-03-2018 Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 195 2.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 211 2.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 211 223 2.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 Gene3D G3DSA:1.10.10.10 186 241 2.3E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 SUPERFAMILY SSF75516 8 171 1.83E-16 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 Pfam PF03472 Autoinducer binding domain 20 161 4.5E-24 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 SMART SM00421 178 235 3.7E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS02560 88d83103095aea5d9ed54e83215b7dc6 243 SUPERFAMILY SSF46894 174 241 4.42E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS02110 81d8177f0c8c73aa53afaef54b7afeb2 173 Gene3D G3DSA:3.40.630.30 1 172 4.9E-28 T 29-03-2018 Y880_RS02110 81d8177f0c8c73aa53afaef54b7afeb2 173 Pfam PF00583 Acetyltransferase (GNAT) family 14 139 4.0E-17 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS02110 81d8177f0c8c73aa53afaef54b7afeb2 173 SUPERFAMILY SSF55729 3 162 1.34E-24 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 Pfam PF00570 HRDC domain 215 282 3.3E-17 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 SMART SM00474 6 174 1.8E-35 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 SUPERFAMILY SSF53098 5 212 1.6E-60 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 SUPERFAMILY SSF47819 297 372 9.91E-16 T 29-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 SMART SM00341 212 292 1.1E-11 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 Gene3D G3DSA:1.10.150.80 197 296 3.7E-23 T 29-03-2018 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 Gene3D G3DSA:3.30.420.10 5 196 1.3E-40 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 SUPERFAMILY SSF47819 197 303 2.62E-29 T 29-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 Pfam PF01612 3'-5' exonuclease 6 173 2.0E-38 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 TIGRFAM TIGR01388 rnd: ribonuclease D 8 373 4.2E-157 T 29-03-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 Y880_RS03365 d1e60a7e88e66298aaf6f86d22f79eea 374 Hamap MF_01899 Ribonuclease D [rnd]. 6 372 43.397 T 29-03-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF00563 EAL domain 440 674 6.5E-72 T 29-03-2018 IPR001633 EAL domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SUPERFAMILY SSF55073 268 425 3.37E-54 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 418 2.7E-51 T 29-03-2018 IPR000160 GGDEF domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Gene3D G3DSA:3.30.70.270 264 430 5.1E-66 T 29-03-2018 Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 261 421 5.1E-47 T 29-03-2018 IPR000160 GGDEF domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 109 2.3E-21 T 29-03-2018 IPR005330 MHYT domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 182 245 8.7E-15 T 29-03-2018 IPR005330 MHYT domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 115 171 1.3E-15 T 29-03-2018 IPR005330 MHYT domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SMART SM00267 252 423 7.3E-68 T 29-03-2018 IPR000160 GGDEF domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SUPERFAMILY SSF141868 439 682 3.66E-89 T 29-03-2018 IPR001633 EAL domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SMART SM00052 433 679 5.4E-120 T 29-03-2018 IPR001633 EAL domain Y880_RS05705 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Gene3D G3DSA:3.20.20.450 431 683 7.9E-100 T 29-03-2018 IPR001633 EAL domain Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 SUPERFAMILY SSF51445 199 565 6.09E-89 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 18 661 47.399 T 29-03-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16 Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:1.20.58.280 116 184 3.1E-8 T 29-03-2018 Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 SMART SM00642 213 651 7.7E-5 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 Pfam PF11896 Domain of unknown function (DUF3416) 21 203 2.5E-46 T 29-03-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16 Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:2.60.40.1180 570 664 5.5E-24 T 29-03-2018 Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 Pfam PF00128 Alpha amylase, catalytic domain 227 332 4.2E-6 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:3.20.20.80 205 568 1.9E-63 T 29-03-2018 Y880_RS07975 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:2.60.40.10 18 115 1.0E-24 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS04035 90ce412abf6db130d641940b894f2b9d 290 Gene3D G3DSA:3.40.190.10 175 261 1.2E-17 T 29-03-2018 Y880_RS04035 90ce412abf6db130d641940b894f2b9d 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.4E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS04035 90ce412abf6db130d641940b894f2b9d 290 Gene3D G3DSA:3.40.190.10 78 174 6.6E-21 T 29-03-2018 Y880_RS04035 90ce412abf6db130d641940b894f2b9d 290 SUPERFAMILY SSF46785 2 109 1.5E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04035 90ce412abf6db130d641940b894f2b9d 290 Gene3D G3DSA:1.10.10.10 1 77 1.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04035 90ce412abf6db130d641940b894f2b9d 290 SUPERFAMILY SSF53850 86 285 1.15E-40 T 29-03-2018 Y880_RS04035 90ce412abf6db130d641940b894f2b9d 290 Pfam PF03466 LysR substrate binding domain 85 283 3.3E-44 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS29205 7bbfbc897cd1250ff324e04bf0133c62 228 SUPERFAMILY SSF52540 1 214 6.02E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS29205 7bbfbc897cd1250ff324e04bf0133c62 228 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 176 1.8E-44 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Y880_RS29205 7bbfbc897cd1250ff324e04bf0133c62 228 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 218 29.0 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Y880_RS29205 7bbfbc897cd1250ff324e04bf0133c62 228 PIRSF PIRSF006755 1 226 9.2E-77 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Y880_RS29205 7bbfbc897cd1250ff324e04bf0133c62 228 Pfam PF13500 AAA domain 3 211 1.4E-35 T 29-03-2018 Y880_RS29205 7bbfbc897cd1250ff324e04bf0133c62 228 Gene3D G3DSA:3.40.50.300 1 218 4.0E-58 T 29-03-2018 Y880_RS14385 209903049cac7ddebeadbcd667a3f2f5 721 Gene3D G3DSA:2.40.170.20 171 721 1.6E-76 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS14385 209903049cac7ddebeadbcd667a3f2f5 721 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 704 721 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS14385 209903049cac7ddebeadbcd667a3f2f5 721 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 52 721 3.6E-96 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS14385 209903049cac7ddebeadbcd667a3f2f5 721 Pfam PF00593 TonB dependent receptor 240 718 8.2E-56 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS14385 209903049cac7ddebeadbcd667a3f2f5 721 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 164 2.6E-21 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS14385 209903049cac7ddebeadbcd667a3f2f5 721 SUPERFAMILY SSF56935 35 721 4.27E-119 T 29-03-2018 Y880_RS14385 209903049cac7ddebeadbcd667a3f2f5 721 Gene3D G3DSA:2.170.130.10 23 170 1.6E-27 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 362 1.9E-30 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 SUPERFAMILY SSF53738 155 256 2.43E-31 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 443 46.762 T 29-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Gene3D G3DSA:3.40.120.10 2 153 6.9E-47 T 29-03-2018 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 5.2E-19 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 9.0E-44 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 SUPERFAMILY SSF55957 357 444 1.7E-20 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 441 8.0E-193 T 29-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Gene3D G3DSA:3.30.310.50 373 444 3.3E-18 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Gene3D G3DSA:3.40.120.10 268 372 3.9E-28 T 29-03-2018 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 439 2.0E-11 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 Gene3D G3DSA:3.40.120.10 155 267 3.6E-33 T 29-03-2018 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 SUPERFAMILY SSF53738 257 363 1.18E-29 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 SUPERFAMILY SSF53738 2 180 9.81E-47 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 9.2E-15 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 9.2E-15 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS22240 1654615152f2555fc6d7cf11d4b41498 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 9.2E-15 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS00980 2fb98bc99dd20bc0a355c02f349d5abd 246 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 3 243 27.562 T 29-03-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 Y880_RS00980 2fb98bc99dd20bc0a355c02f349d5abd 246 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 9 225 3.4E-36 T 29-03-2018 Y880_RS15560 3ff9d1242dba712eaa3ef5fb8d02416a 194 PIRSF PIRSF006102 1 193 2.1E-60 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS15560 3ff9d1242dba712eaa3ef5fb8d02416a 194 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 192 1.9E-82 T 29-03-2018 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 Y880_RS15560 3ff9d1242dba712eaa3ef5fb8d02416a 194 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 2 192 24.557 T 29-03-2018 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 Y880_RS15560 3ff9d1242dba712eaa3ef5fb8d02416a 194 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 191 4.1E-61 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 2.7E-17 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 329 398 4.6E-15 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 272 7.2E-41 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 412 547 2.5E-10 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 SUPERFAMILY SSF55124 1 125 3.76E-30 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 SUPERFAMILY SSF56014 409 548 5.5E-38 T 29-03-2018 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 Gene3D G3DSA:3.30.413.10 406 550 5.6E-32 T 29-03-2018 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 SUPERFAMILY SSF56014 120 285 1.83E-47 T 29-03-2018 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 SUPERFAMILY SSF55124 315 421 1.39E-24 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 SUPERFAMILY SSF55124 252 276 1.39E-24 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 Gene3D G3DSA:3.30.413.10 120 238 1.8E-26 T 29-03-2018 Y880_RS06320 d2ea65b881b9c092a474ab55bf811d84 552 Gene3D G3DSA:3.90.480.10 239 405 1.7E-24 T 29-03-2018 Y880_RS04710 bc404187a7779544df157a8c62240fdf 224 Gene3D G3DSA:1.10.260.40 47 83 2.1E-4 T 29-03-2018 Y880_RS04710 bc404187a7779544df157a8c62240fdf 224 Gene3D G3DSA:1.10.357.10 84 181 0.0062 T 29-03-2018 Y880_RS04710 bc404187a7779544df157a8c62240fdf 224 SUPERFAMILY SSF46689 14 76 1.21E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS04710 bc404187a7779544df157a8c62240fdf 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 6.0E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS04710 bc404187a7779544df157a8c62240fdf 224 Gene3D G3DSA:1.10.10.60 3 46 4.8E-11 T 29-03-2018 Y880_RS29285 524245174da2c59b56c9eab9b2638192 568 SUPERFAMILY SSF51004 143 568 1.57E-128 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain Y880_RS29285 524245174da2c59b56c9eab9b2638192 568 Pfam PF02239 Cytochrome D1 heme domain 171 563 4.4E-167 T 29-03-2018 Y880_RS29285 524245174da2c59b56c9eab9b2638192 568 Gene3D G3DSA:1.10.760.10 26 141 2.8E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29285 524245174da2c59b56c9eab9b2638192 568 Gene3D G3DSA:2.140.10.20 143 568 2.1E-140 T 29-03-2018 Y880_RS29285 524245174da2c59b56c9eab9b2638192 568 SUPERFAMILY SSF46626 18 159 5.16E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29285 524245174da2c59b56c9eab9b2638192 568 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 62 134 6.2E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS03745 d5fa826d61210480e526acb5444b66c2 157 Pfam PF04191 Phospholipid methyltransferase 45 146 1.3E-13 T 29-03-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 Y880_RS03745 d5fa826d61210480e526acb5444b66c2 157 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 116 157 3.0E-7 T 29-03-2018 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 Gene3D G3DSA:3.40.1060.10 160 294 1.7E-42 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 ProSitePatterns PS00450 Aconitase family signature 1. 345 361 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 139 154 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 292 306 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 114 122 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 125 138 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 201 214 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 349 360 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 406 419 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 215 228 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 88 101 7.5E-48 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 Gene3D G3DSA:3.30.499.10 1 159 1.0E-39 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 472 3.5E-233 T 29-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 SUPERFAMILY SSF53732 2 472 2.49E-163 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 Pfam PF00330 Aconitase family (aconitate hydratase) 8 464 1.6E-159 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 Gene3D G3DSA:3.30.499.10 324 474 4.5E-50 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13630 922f5b848e2337631c98e688e7f83e30 474 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 473 61.578 T 29-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Y880_RS29510 346583360c44423a3f85afb6eb987663 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 3.5E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29510 346583360c44423a3f85afb6eb987663 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 3.5E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29510 346583360c44423a3f85afb6eb987663 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 3.5E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29510 346583360c44423a3f85afb6eb987663 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 3.5E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29510 346583360c44423a3f85afb6eb987663 224 Gene3D G3DSA:1.10.150.240 20 74 9.7E-8 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS29510 346583360c44423a3f85afb6eb987663 224 SUPERFAMILY SSF56784 4 219 1.8E-51 T 29-03-2018 IPR023214 HAD-like domain Y880_RS29510 346583360c44423a3f85afb6eb987663 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 183 6.3E-17 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29510 346583360c44423a3f85afb6eb987663 224 Gene3D G3DSA:3.40.50.1000 75 223 3.1E-27 T 29-03-2018 IPR023214 HAD-like domain Y880_RS29510 346583360c44423a3f85afb6eb987663 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 183 5.1E-23 T 29-03-2018 IPR023214 HAD-like domain Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 SMART SM00481 6 73 2.8E-25 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 Gene3D G3DSA:1.10.150.280 787 895 2.9E-10 T 29-03-2018 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 290 736 2.9E-176 T 29-03-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF01336 OB-fold nucleic acid binding domain 1009 1083 6.3E-10 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 Gene3D G3DSA:2.40.50.140 991 1088 1.1E-16 T 29-03-2018 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1045 0.0 T 29-03-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 Gene3D G3DSA:3.20.20.140 3 255 3.1E-37 T 29-03-2018 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF14579 Helix-hairpin-helix motif 810 895 8.5E-26 T 29-03-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 SUPERFAMILY SSF89550 5 262 1.24E-14 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Y880_RS16355 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF02811 PHP domain 7 171 2.3E-41 T 29-03-2018 IPR004013 PHP domain GO:0003824 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 656 678 4.3E-48 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 684 707 4.3E-48 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 760 787 4.3E-48 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 446 465 4.3E-48 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 581 592 4.3E-48 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 618 641 4.3E-48 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 294 365 6.4E-22 T 29-03-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 Pfam PF03477 ATP cone domain 33 128 2.6E-18 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 Pfam PF03477 ATP cone domain 149 233 7.7E-8 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 Pfam PF02867 Ribonucleotide reductase, barrel domain 371 905 1.2E-182 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 Gene3D G3DSA:3.20.70.20 274 912 5.8E-210 T 29-03-2018 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 SUPERFAMILY SSF48168 154 369 4.45E-64 T 29-03-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 SUPERFAMILY SSF51998 840 907 5.8E-182 T 29-03-2018 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 SUPERFAMILY SSF51998 370 809 5.8E-182 T 29-03-2018 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 297 907 3.0E-216 T 29-03-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02660 f918cd8bb43911338ab2aaa104636425 963 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 750 771 - T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.30.70.870 405 500 3.2E-38 T 29-03-2018 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF54980 411 488 1.22E-25 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 SMART SM00838 614 701 7.2E-55 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:2.40.30.10 288 404 3.9E-31 T 29-03-2018 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 7.8E-65 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-17 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 12 25 6.6E-17 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-17 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 58 66 6.6E-17 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-17 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.30.70.240 628 705 3.8E-30 T 29-03-2018 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Hamap MF_00054_B Elongation factor G [fusA]. 6 705 108.332 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF52540 6 287 9.06E-104 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF14492 Elongation Factor G, domain II 411 485 2.4E-35 T 29-03-2018 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 SMART SM00889 487 612 1.3E-66 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF03144 Elongation factor Tu domain 2 331 398 7.1E-18 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF54211 486 612 8.09E-37 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.30.230.10 501 627 1.0E-36 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 186 5.1E-33 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF54980 617 703 2.78E-29 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF00679 Elongation factor G C-terminus 615 699 1.2E-30 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 705 0.0 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.40.50.300 1 287 1.1E-58 T 29-03-2018 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF03764 Elongation factor G, domain IV 486 611 7.7E-42 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y880_RS19585 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF50447 271 411 5.52E-35 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 Gene3D G3DSA:3.30.930.10 3 203 5.4E-58 T 29-03-2018 Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 Pfam PF03099 Biotin/lipoate A/B protein ligase family 62 158 3.6E-5 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 SUPERFAMILY SSF55681 6 204 2.57E-66 T 29-03-2018 Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 Hamap MF_00013 Octanoyltransferase [lipB]. 4 205 37.338 T 29-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 70 85 - T 29-03-2018 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 28 194 1.4E-62 T 29-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 127 1.0E-12 T 29-03-2018 Y880_RS18230 1b70f9ba5b30266d5b24540a1af2b04c 217 PIRSF PIRSF016262 4 215 8.5E-58 T 29-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y880_RS18880 920e2e6b4476b1ed696cb4a2ccdcbade 434 Pfam PF07690 Major Facilitator Superfamily 30 392 1.9E-49 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS18880 920e2e6b4476b1ed696cb4a2ccdcbade 434 SUPERFAMILY SSF103473 18 426 5.75E-81 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS18880 920e2e6b4476b1ed696cb4a2ccdcbade 434 Gene3D G3DSA:1.20.1250.20 16 224 5.0E-37 T 29-03-2018 Y880_RS18880 920e2e6b4476b1ed696cb4a2ccdcbade 434 Gene3D G3DSA:1.20.1250.20 238 429 7.9E-24 T 29-03-2018 Y880_RS26480 09d5da67a3ac5ea1be9a70240d011f1b 169 Gene3D G3DSA:2.70.70.10 21 168 4.0E-23 T 29-03-2018 Y880_RS26480 09d5da67a3ac5ea1be9a70240d011f1b 169 SUPERFAMILY SSF51261 23 138 9.42E-27 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS26480 09d5da67a3ac5ea1be9a70240d011f1b 169 Pfam PF01551 Peptidase family M23 50 137 2.4E-19 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 SUPERFAMILY SSF46689 211 256 1.43E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 Gene3D G3DSA:2.60.120.10 6 93 7.3E-7 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 Pfam PF12833 Helix-turn-helix domain 180 256 8.6E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 256 1.1E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 225 240 1.1E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 Gene3D G3DSA:1.10.10.60 155 212 2.4E-10 T 29-03-2018 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 SMART SM00342 174 256 3.6E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 Gene3D G3DSA:1.10.10.60 213 267 1.8E-12 T 29-03-2018 Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 SUPERFAMILY SSF51182 16 183 1.54E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS19715 437e48f2c6cc6e64c9166cc3139f2c8c 267 Pfam PF02311 AraC-like ligand binding domain 21 99 6.6E-11 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS26615 68343af7874fd45b80547b0262af8705 178 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 147 1.8E-43 T 29-03-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 Y880_RS26615 68343af7874fd45b80547b0262af8705 178 PIRSF PIRSF004682 1 174 2.2E-53 T 29-03-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 Y880_RS26615 68343af7874fd45b80547b0262af8705 178 Pfam PF13242 HAD-hyrolase-like 101 170 2.9E-12 T 29-03-2018 Y880_RS26615 68343af7874fd45b80547b0262af8705 178 SUPERFAMILY SSF56784 2 177 3.39E-46 T 29-03-2018 IPR023214 HAD-like domain Y880_RS26615 68343af7874fd45b80547b0262af8705 178 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 148 4.8E-35 T 29-03-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Y880_RS26615 68343af7874fd45b80547b0262af8705 178 Gene3D G3DSA:3.40.50.1000 5 178 7.0E-32 T 29-03-2018 IPR023214 HAD-like domain Y880_RS12860 ab9d0cd735232a883bcf8b1c8226c717 230 SUPERFAMILY SSF56784 3 215 5.65E-58 T 29-03-2018 IPR023214 HAD-like domain Y880_RS12860 ab9d0cd735232a883bcf8b1c8226c717 230 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 103 180 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS12860 ab9d0cd735232a883bcf8b1c8226c717 230 Gene3D G3DSA:3.40.50.1000 1 31 0.16 T 29-03-2018 IPR023214 HAD-like domain Y880_RS12860 ab9d0cd735232a883bcf8b1c8226c717 230 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 186 5.4E-30 T 29-03-2018 IPR023214 HAD-like domain Y880_RS12860 ab9d0cd735232a883bcf8b1c8226c717 230 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 125 186 1.7E-8 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS12860 ab9d0cd735232a883bcf8b1c8226c717 230 Gene3D G3DSA:3.40.50.1000 77 222 8.0E-35 T 29-03-2018 IPR023214 HAD-like domain Y880_RS12860 ab9d0cd735232a883bcf8b1c8226c717 230 Gene3D G3DSA:1.10.150.240 32 76 5.2E-15 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 Pfam PF00561 alpha/beta hydrolase fold 30 251 1.4E-28 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 TIGRFAM TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase 4 279 7.2E-192 T 29-03-2018 IPR011942 Poly(3-hydroxyalkanoate) depolymerase Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 Gene3D G3DSA:3.40.50.1820 5 267 7.5E-40 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 SUPERFAMILY SSF53474 3 267 9.4E-55 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 3.9E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 3.9E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 3.9E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS23845 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.9E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS12105 02a76c47c9db83d9d3ad2d14c3463b27 403 Gene3D G3DSA:3.90.1150.10 280 403 8.3E-22 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS12105 02a76c47c9db83d9d3ad2d14c3463b27 403 Pfam PF00155 Aminotransferase class I and II 35 385 5.2E-48 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS12105 02a76c47c9db83d9d3ad2d14c3463b27 403 SUPERFAMILY SSF53383 6 401 3.36E-95 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS12105 02a76c47c9db83d9d3ad2d14c3463b27 403 Gene3D G3DSA:3.40.640.10 52 279 4.0E-50 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS15390 ad6edecc9cfd01e9f469a7bf67b67648 496 Gene3D G3DSA:3.40.50.300 2 250 1.2E-72 T 29-03-2018 Y880_RS15390 ad6edecc9cfd01e9f469a7bf67b67648 496 Gene3D G3DSA:3.40.50.300 251 496 5.4E-83 T 29-03-2018 Y880_RS15390 ad6edecc9cfd01e9f469a7bf67b67648 496 SUPERFAMILY SSF52540 302 489 1.21E-24 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15390 ad6edecc9cfd01e9f469a7bf67b67648 496 SUPERFAMILY SSF52540 41 215 2.57E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15390 ad6edecc9cfd01e9f469a7bf67b67648 496 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 11 234 3.6E-53 T 29-03-2018 IPR022488 Polyphosphate kinase-2-related Y880_RS15390 ad6edecc9cfd01e9f469a7bf67b67648 496 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 269 495 3.1E-99 T 29-03-2018 IPR022488 Polyphosphate kinase-2-related Y880_RS15390 ad6edecc9cfd01e9f469a7bf67b67648 496 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 2 491 1.5E-235 T 29-03-2018 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 SMART SM00244 21 178 4.5E-63 T 29-03-2018 IPR001107 Band 7 domain Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 PRINTS PR00721 Stomatin signature 198 221 1.7E-60 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 PRINTS PR00721 Stomatin signature 154 172 1.7E-60 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 PRINTS PR00721 Stomatin signature 28 50 1.7E-60 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 PRINTS PR00721 Stomatin signature 110 127 1.7E-60 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 PRINTS PR00721 Stomatin signature 173 194 1.7E-60 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 PRINTS PR00721 Stomatin signature 75 96 1.7E-60 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 PRINTS PR00721 Stomatin signature 130 153 1.7E-60 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 Pfam PF01145 SPFH domain / Band 7 family 26 194 2.0E-34 T 29-03-2018 IPR001107 Band 7 domain Y880_RS28935 19f0947abcb7652be0159e6833b18290 264 SUPERFAMILY SSF117892 52 185 3.53E-43 T 29-03-2018 IPR001107 Band 7 domain Y880_RS03475 25498fde42957f78391e7a2a0cc097e5 513 SUPERFAMILY SSF103473 1 199 2.35E-66 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03475 25498fde42957f78391e7a2a0cc097e5 513 SUPERFAMILY SSF103473 463 488 2.35E-66 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03475 25498fde42957f78391e7a2a0cc097e5 513 SUPERFAMILY SSF103473 245 415 2.35E-66 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03475 25498fde42957f78391e7a2a0cc097e5 513 Gene3D G3DSA:1.20.1250.20 248 493 2.1E-29 T 29-03-2018 Y880_RS03475 25498fde42957f78391e7a2a0cc097e5 513 ProSitePatterns PS00216 Sugar transport proteins signature 1. 63 79 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS03475 25498fde42957f78391e7a2a0cc097e5 513 Gene3D G3DSA:1.20.1250.20 4 197 2.1E-32 T 29-03-2018 Y880_RS03475 25498fde42957f78391e7a2a0cc097e5 513 Pfam PF07690 Major Facilitator Superfamily 13 405 6.5E-52 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS13775 4896262397a4c0120cdd2f1c7d3a1bc9 383 Pfam PF13439 Glycosyltransferase Family 4 16 180 6.5E-12 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS13775 4896262397a4c0120cdd2f1c7d3a1bc9 383 Gene3D G3DSA:3.40.50.2000 188 362 3.5E-39 T 29-03-2018 Y880_RS13775 4896262397a4c0120cdd2f1c7d3a1bc9 383 Gene3D G3DSA:3.40.50.2000 22 187 2.8E-12 T 29-03-2018 Y880_RS13775 4896262397a4c0120cdd2f1c7d3a1bc9 383 SUPERFAMILY SSF53756 5 376 9.94E-65 T 29-03-2018 Y880_RS13775 4896262397a4c0120cdd2f1c7d3a1bc9 383 Pfam PF00534 Glycosyl transferases group 1 191 356 1.7E-26 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 44 171 1.5E-41 T 29-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 246 257 - T 29-03-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 Gene3D G3DSA:1.10.645.10 411 582 1.6E-32 T 29-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 Gene3D G3DSA:1.10.645.10 205 410 7.2E-46 T 29-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 43 170 3.1E-42 T 29-03-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 19 179 25.66 T 29-03-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 10 593 71.848 T 29-03-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 SUPERFAMILY SSF143243 18 223 4.58E-60 T 29-03-2018 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 205 593 42.347 T 29-03-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 323 593 2.3E-106 T 29-03-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 99 154 1.0E-26 T 29-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 209 593 3.9E-172 T 29-03-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10615 f7e72e4e6d8842b628980b50c71da063 593 SUPERFAMILY SSF56762 219 593 5.89E-123 T 29-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 526 640 2.6E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Gene3D G3DSA:3.30.565.10 474 641 3.2E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SUPERFAMILY SSF55874 468 640 8.51E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Pfam PF07696 7TMR-DISM extracellular 2 49 170 2.4E-21 T 29-03-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Pfam PF00072 Response regulator receiver domain 661 776 6.2E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Pfam PF00072 Response regulator receiver domain 810 924 4.1E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Gene3D G3DSA:3.40.50.2300 652 798 3.1E-26 T 29-03-2018 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SUPERFAMILY SSF47384 409 480 1.18E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Gene3D G3DSA:1.10.287.130 395 473 6.8E-17 T 29-03-2018 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 580 5.7E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 638 5.7E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 619 5.7E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SUPERFAMILY SSF52172 656 782 4.27E-27 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SMART SM00387 526 641 2.3E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SMART SM00388 414 479 1.9E-23 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Pfam PF00512 His Kinase A (phospho-acceptor) domain 415 479 1.1E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SUPERFAMILY SSF52172 807 929 2.85E-35 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Pfam PF07695 7TM diverse intracellular signalling 189 388 1.3E-22 T 29-03-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SMART SM00448 658 777 6.2E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 SMART SM00448 808 924 9.9E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22795 4d4139d7169c3d7456de0f9b41963026 942 Gene3D G3DSA:3.40.50.2300 799 940 1.3E-37 T 29-03-2018 Y880_RS02160 4fdd2e35ee9e5ba926426f1c71df5f95 417 Pfam PF11862 Domain of unknown function (DUF3382) 3 105 7.9E-20 T 29-03-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal Y880_RS02160 4fdd2e35ee9e5ba926426f1c71df5f95 417 Pfam PF02653 Branched-chain amino acid transport system / permease component 114 398 1.1E-51 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS02160 4fdd2e35ee9e5ba926426f1c71df5f95 417 Gene3D G3DSA:1.10.3470.10 89 403 1.9E-41 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS03865 05e735c247f506cc7aa044f0a985c7c9 374 SUPERFAMILY SSF53756 22 372 1.79E-57 T 29-03-2018 Y880_RS03865 05e735c247f506cc7aa044f0a985c7c9 374 Gene3D G3DSA:3.40.50.2000 22 197 3.4E-10 T 29-03-2018 Y880_RS03865 05e735c247f506cc7aa044f0a985c7c9 374 Pfam PF00534 Glycosyl transferases group 1 198 354 1.9E-27 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS03865 05e735c247f506cc7aa044f0a985c7c9 374 Gene3D G3DSA:3.40.50.2000 198 362 9.3E-37 T 29-03-2018 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 Gene3D G3DSA:3.40.190.10 90 175 1.6E-17 T 29-03-2018 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.1E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 Gene3D G3DSA:3.40.190.10 176 256 1.7E-15 T 29-03-2018 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 3.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 3.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 3.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 SUPERFAMILY SSF46785 7 113 4.61E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 Pfam PF03466 LysR substrate binding domain 90 286 1.6E-39 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 SUPERFAMILY SSF53850 92 291 5.25E-43 T 29-03-2018 Y880_RS17440 f5da2a4c0998617391541157e069cfaf 298 Gene3D G3DSA:1.10.10.10 4 87 1.7E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 29-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 652 9.9E-214 T 29-03-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 SMART SM00926 221 275 1.4E-11 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Gene3D G3DSA:3.40.50.740 294 709 1.6E-30 T 29-03-2018 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 3.5E-12 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 29-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 127 1.1E-14 T 29-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 SUPERFAMILY SSF54862 81 213 1.17E-33 T 29-03-2018 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 29-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Gene3D G3DSA:1.10.1060.10 111 225 8.0E-4 T 29-03-2018 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Gene3D G3DSA:3.10.20.30 1 92 2.2E-7 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 SUPERFAMILY SSF50692 812 889 9.27E-8 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Gene3D G3DSA:2.40.40.20 822 898 3.2E-6 T 29-03-2018 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Gene3D G3DSA:2.20.25.90 226 280 8.4E-11 T 29-03-2018 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 75 2.7E-10 T 29-03-2018 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 SUPERFAMILY SSF53706 219 685 3.87E-86 T 29-03-2018 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 SUPERFAMILY SSF54292 1 77 7.88E-19 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 Pfam PF00384 Molybdopterin oxidoreductase 550 635 1.0E-10 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10630 5aa4f20359819a15a6d9691ed14bb683 905 SMART SM00929 88 128 2.6E-19 T 29-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82866 814 1039 1.19E-58 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82693 155 191 8.72E-21 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82693 277 333 8.72E-21 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82714 726 817 3.79E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1046 0.0 T 29-03-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 Gene3D G3DSA:3.30.2090.10 190 277 2.0E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 Pfam PF00873 AcrB/AcrD/AcrF family 5 1035 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 Gene3D G3DSA:3.30.2090.10 725 818 2.5E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82693 579 668 2.56E-6 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.5E-20 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 1.5E-20 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.5E-20 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.5E-20 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 PRINTS PR00702 Acriflavin resistance protein family signature 624 638 1.5E-20 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.5E-20 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 Gene3D G3DSA:3.30.70.1430 42 135 4.0E-25 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82866 299 506 3.66E-34 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 Gene3D G3DSA:3.30.70.1430 568 670 6.2E-12 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82693 42 127 5.49E-24 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 Gene3D G3DSA:1.20.1640.10 820 1039 2.4E-39 T 29-03-2018 Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 SUPERFAMILY SSF82714 192 274 9.29E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09950 801c1bf13571bcb18154a4d54f8b2e98 1051 Gene3D G3DSA:1.20.1640.10 293 518 9.3E-35 T 29-03-2018 Y880_RS07870 e8e229f9455f4659df64cc4ecb0fa177 285 SUPERFAMILY SSF141868 29 264 3.01E-39 T 29-03-2018 IPR001633 EAL domain Y880_RS07870 e8e229f9455f4659df64cc4ecb0fa177 285 Gene3D G3DSA:3.20.20.450 12 273 9.4E-44 T 29-03-2018 IPR001633 EAL domain Y880_RS07870 e8e229f9455f4659df64cc4ecb0fa177 285 Pfam PF00563 EAL domain 28 259 6.7E-41 T 29-03-2018 IPR001633 EAL domain Y880_RS07870 e8e229f9455f4659df64cc4ecb0fa177 285 SMART SM00052 22 264 5.9E-13 T 29-03-2018 IPR001633 EAL domain Y880_RS15540 f395509365f45167133f9d76d41f308b 677 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 543 677 1.9E-40 T 29-03-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF52374 4 140 1.15E-98 T 29-03-2018 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF52374 175 386 1.15E-98 T 29-03-2018 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:1.10.730.10 372 536 3.5E-34 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Hamap MF_00098 Methionine--tRNA ligase [metG]. 5 545 39.351 T 29-03-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF47323 389 547 1.4E-42 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:2.20.28.20 141 174 1.6E-15 T 29-03-2018 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:2.170.220.10 180 248 3.0E-15 T 29-03-2018 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF50249 570 676 2.03E-26 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Pfam PF01588 Putative tRNA binding domain 581 674 4.4E-20 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 2.2E-24 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 2.2E-24 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 250 261 2.2E-24 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 2.2E-24 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 290 305 2.2E-24 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 383 394 2.2E-24 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 25 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:2.40.50.140 567 677 1.3E-22 T 29-03-2018 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Pfam PF09334 tRNA synthetases class I (M) 7 395 4.0E-154 T 29-03-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 535 2.3E-174 T 29-03-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:3.40.50.620 249 366 4.6E-20 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS15540 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:3.40.50.620 3 80 7.1E-20 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS15540 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF57770 141 175 5.36E-12 T 29-03-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1800.10 1282 1324 7.7E-12 T 29-03-2018 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04560 RNA polymerase Rpb2, domain 7 1281 1356 4.3E-27 T 29-03-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1110.10 152 436 7.3E-68 T 29-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1100.10 437 650 2.2E-78 T 29-03-2018 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1100.10 651 718 5.0E-16 T 29-03-2018 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 SUPERFAMILY SSF64484 1056 1357 0.0 T 29-03-2018 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 SUPERFAMILY SSF64484 11 230 0.0 T 29-03-2018 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 SUPERFAMILY SSF64484 348 944 0.0 T 29-03-2018 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:2.40.50.150 834 1062 1.1E-53 T 29-03-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:2.40.270.10 1063 1257 1.1E-79 T 29-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1357 12.349 T 29-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:2.40.50.100 720 800 4.3E-29 T 29-03-2018 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1354 0.0 T 29-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04565 RNA polymerase Rpb2, domain 3 518 585 4.6E-31 T 29-03-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1080 1092 - T 29-03-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF00562 RNA polymerase Rpb2, domain 6 722 1279 2.3E-160 T 29-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF10385 RNA polymerase beta subunit external 1 domain 596 661 4.7E-20 T 29-03-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04561 RNA polymerase Rpb2, domain 2 359 459 1.1E-14 T 29-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04561 RNA polymerase Rpb2, domain 2 156 227 1.8E-8 T 29-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19605 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04563 RNA polymerase beta subunit 26 504 6.3E-41 T 29-03-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Pfam PF01568 Molydopterin dinucleotide binding domain 644 754 9.0E-17 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Pfam PF00384 Molybdopterin oxidoreductase 63 452 7.4E-35 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 SUPERFAMILY SSF53706 7 494 3.93E-112 T 29-03-2018 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Gene3D G3DSA:3.40.50.740 376 508 5.3E-19 T 29-03-2018 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 7 58 3.5E-16 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Gene3D G3DSA:3.40.228.10 154 375 4.7E-41 T 29-03-2018 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Gene3D G3DSA:2.40.40.20 552 768 7.1E-24 T 29-03-2018 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Gene3D G3DSA:2.20.25.90 1 63 9.3E-15 T 29-03-2018 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 SUPERFAMILY SSF50692 628 762 5.2E-25 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 SMART SM00926 6 59 1.3E-12 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 425 442 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y880_RS11010 e8ff01f88e9ebbf251dab63f369ad92e 769 Gene3D G3DSA:3.40.50.740 64 153 1.4E-9 T 29-03-2018 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 5.0E-33 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 29-03-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 SUPERFAMILY SSF54719 88 201 3.27E-43 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 Gene3D G3DSA:1.10.287.990 20 89 2.5E-29 T 29-03-2018 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 197 4.1E-37 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 SUPERFAMILY SSF46609 1 90 1.31E-37 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.9E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 3.9E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.9E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 3.9E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 125 133 3.9E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20645 5cfe4531640d7a7710ea4d31c0fc9e82 203 PIRSF PIRSF000349 1 203 3.2E-80 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 Pfam PF00158 Sigma-54 interaction domain 145 310 4.5E-67 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 SUPERFAMILY SSF52172 5 187 1.85E-43 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 Pfam PF02954 Bacterial regulatory protein, Fis family 394 433 1.1E-6 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 Pfam PF00072 Response regulator receiver domain 5 113 7.0E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:3.40.50.300 144 315 5.8E-27 T 29-03-2018 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:1.10.10.60 397 441 1.4E-10 T 29-03-2018 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:3.40.50.2300 3 143 1.0E-32 T 29-03-2018 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 SMART SM00382 164 307 4.2E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 SUPERFAMILY SSF46689 355 436 3.76E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:1.10.8.60 316 396 1.7E-21 T 29-03-2018 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 SMART SM00448 3 114 1.0E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS26240 2ee032b71f1432ca04bf81882ebc8ead 447 SUPERFAMILY SSF52540 144 373 4.49E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09690 729735204bdc850321acfbba0cbb267b 353 TIGRFAM TIGR02272 gentisate_1_2: gentisate 1,2-dioxygenase 9 348 3.4E-163 T 29-03-2018 IPR011960 Gentisate 1,2-dioxygenase Y880_RS09690 729735204bdc850321acfbba0cbb267b 353 Gene3D G3DSA:2.60.120.10 35 351 2.7E-38 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS09690 729735204bdc850321acfbba0cbb267b 353 Pfam PF07883 Cupin domain 93 164 1.3E-24 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS09690 729735204bdc850321acfbba0cbb267b 353 SUPERFAMILY SSF51182 6 346 7.0E-117 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PIRSF PIRSF000724 1 387 4.6E-132 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 Gene3D G3DSA:3.40.50.1260 3 174 4.7E-60 T 29-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 SUPERFAMILY SSF53748 4 383 2.59E-144 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 Gene3D G3DSA:3.40.50.1260 175 371 1.8E-76 T 29-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 3.2E-80 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 29-03-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 Pfam PF00162 Phosphoglycerate kinase 6 373 1.5E-140 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29460 193e3ac28e2cda951fddc81f32dce19d 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.967 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 SUPERFAMILY SSF55486 22 220 1.21E-20 T 29-03-2018 Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 Gene3D G3DSA:2.60.120.260 290 452 1.6E-7 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 Gene3D G3DSA:3.40.390.10 9 261 1.6E-16 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 Gene3D G3DSA:2.60.120.260 455 597 6.1E-13 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 SUPERFAMILY SSF49785 455 598 4.25E-24 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 Pfam PF02018 Carbohydrate binding domain 458 583 1.6E-9 T 29-03-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 SUPERFAMILY SSF49785 306 440 8.22E-14 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS11450 d28c727f47c11a0e3bb969a49b3ade8b 599 Pfam PF13582 Metallo-peptidase family M12B Reprolysin-like 46 175 7.2E-25 T 29-03-2018 Y880_RS04270 97cd79891da9cc4188b091843a6bb06d 246 Pfam PF01618 MotA/TolQ/ExbB proton channel family 105 219 3.1E-25 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 Gene3D G3DSA:1.10.439.10 38 202 4.6E-48 T 29-03-2018 IPR023343 Penicillin amidase type, domain1 GO:0016811 Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 Gene3D G3DSA:3.60.20.10 347 567 6.4E-54 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 Gene3D G3DSA:1.10.1400.10 568 672 3.2E-20 T 29-03-2018 Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 Gene3D G3DSA:3.60.20.10 673 791 3.3E-4 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 Gene3D G3DSA:3.60.20.10 254 345 3.4E-26 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 SUPERFAMILY SSF56235 44 790 5.92E-194 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 PIRSF PIRSF001227 16 794 1.8E-170 T 29-03-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y880_RS06615 a57dcbfe1d398be7b0fa31397b7e29a2 809 Pfam PF01804 Penicillin amidase 50 783 5.6E-197 T 29-03-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 SUPERFAMILY SSF55785 39 153 1.21E-18 T 29-03-2018 IPR000014 PAS domain Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 Pfam PF00990 Diguanylate cyclase, GGDEF domain 162 318 2.8E-44 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 SMART SM00086 108 151 4.3E-5 T 29-03-2018 IPR001610 PAC motif Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 158 5.7E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 SMART SM00091 33 102 0.0022 T 29-03-2018 IPR000014 PAS domain Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 SUPERFAMILY SSF55073 167 322 3.3E-46 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 Gene3D G3DSA:3.30.450.20 15 165 2.7E-28 T 29-03-2018 Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 SMART SM00267 151 323 1.4E-51 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 Gene3D G3DSA:3.30.70.270 166 323 2.3E-55 T 29-03-2018 Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 Pfam PF08447 PAS fold 57 145 3.3E-18 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS28075 a8ba5090ea6bad896d79680cb3f2285b 323 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 158 321 1.8E-43 T 29-03-2018 IPR000160 GGDEF domain Y880_RS19950 ed18a2c4a1fc213a50b6c43c70cd2789 507 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 326 486 4.3E-49 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Y880_RS19950 ed18a2c4a1fc213a50b6c43c70cd2789 507 Pfam PF05683 Fumarase C-terminus 289 488 5.6E-80 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Y880_RS19950 ed18a2c4a1fc213a50b6c43c70cd2789 507 Gene3D G3DSA:3.20.130.10 315 488 2.4E-66 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Y880_RS19950 ed18a2c4a1fc213a50b6c43c70cd2789 507 PIRSF PIRSF001394 1 506 2.1E-226 T 29-03-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 Y880_RS19950 ed18a2c4a1fc213a50b6c43c70cd2789 507 SUPERFAMILY SSF117457 318 487 8.5E-64 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Y880_RS19950 ed18a2c4a1fc213a50b6c43c70cd2789 507 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 7.1E-102 T 29-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Y880_RS19950 ed18a2c4a1fc213a50b6c43c70cd2789 507 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 286 2.0E-66 T 29-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Y880_RS05950 593c4af23b6a09f72659a5c2766d9cbd 162 Pfam PF03737 Aldolase/RraA 5 153 3.2E-46 T 29-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Y880_RS05950 593c4af23b6a09f72659a5c2766d9cbd 162 SUPERFAMILY SSF89562 4 158 3.79E-52 T 29-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Y880_RS05950 593c4af23b6a09f72659a5c2766d9cbd 162 Gene3D G3DSA:3.50.30.40 1 160 1.8E-50 T 29-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Y880_RS05950 593c4af23b6a09f72659a5c2766d9cbd 162 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 7.3E-73 T 29-03-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 Y880_RS17035 f54291099f76c5e886a223389aaceef2 320 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 220 1.1E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17035 f54291099f76c5e886a223389aaceef2 320 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 1.1E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17035 f54291099f76c5e886a223389aaceef2 320 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 1.1E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17035 f54291099f76c5e886a223389aaceef2 320 Pfam PF00106 short chain dehydrogenase 30 224 1.3E-22 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17035 f54291099f76c5e886a223389aaceef2 320 SUPERFAMILY SSF51735 27 278 2.0E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS17035 f54291099f76c5e886a223389aaceef2 320 Gene3D G3DSA:3.40.50.720 14 318 2.8E-57 T 29-03-2018 Y880_RS10505 c16c7d0e25d3f741bda098fa74ec81e7 235 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 105 226 2.0E-40 T 29-03-2018 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7799 Y880_RS10505 c16c7d0e25d3f741bda098fa74ec81e7 235 SUPERFAMILY SSF55729 78 233 1.56E-25 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS10505 c16c7d0e25d3f741bda098fa74ec81e7 235 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 15 85 2.2E-18 T 29-03-2018 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7799 Y880_RS10505 c16c7d0e25d3f741bda098fa74ec81e7 235 PIRSF PIRSF037208 1 235 4.0E-94 T 29-03-2018 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic MetaCyc: PWY-7799 Y880_RS10505 c16c7d0e25d3f741bda098fa74ec81e7 235 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 1 235 44.83 T 29-03-2018 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic MetaCyc: PWY-7799 Y880_RS10505 c16c7d0e25d3f741bda098fa74ec81e7 235 Gene3D G3DSA:3.40.630.30 74 217 7.5E-8 T 29-03-2018 Y880_RS27265 752b3dd9ccd42760f0530c7e875b43d9 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 481 2.1E-210 T 29-03-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 Y880_RS27265 752b3dd9ccd42760f0530c7e875b43d9 497 SUPERFAMILY SSF53720 3 483 5.76E-149 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS27265 752b3dd9ccd42760f0530c7e875b43d9 497 Gene3D G3DSA:3.40.309.10 264 459 3.2E-62 T 29-03-2018 Y880_RS27265 752b3dd9ccd42760f0530c7e875b43d9 497 Gene3D G3DSA:3.40.605.10 2 263 7.2E-86 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS27265 752b3dd9ccd42760f0530c7e875b43d9 497 Pfam PF00171 Aldehyde dehydrogenase family 15 477 5.7E-140 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS27265 752b3dd9ccd42760f0530c7e875b43d9 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 Gene3D G3DSA:3.40.190.10 210 333 5.3E-16 T 29-03-2018 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 1.2E-51 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 SUPERFAMILY SSF53850 29 366 9.32E-90 T 29-03-2018 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 Gene3D G3DSA:3.40.190.10 20 209 7.5E-27 T 29-03-2018 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 Pfam PF13416 Bacterial extracellular solute-binding protein 45 319 1.8E-26 T 29-03-2018 Y880_RS10370 8058aa8cd668ec5777dab32fb16018b6 367 PIRSF PIRSF019574 1 367 2.7E-117 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS15850 feae09c954206113ccbd66112e38169f 367 Hamap MF_00557 Alginate lyase [algL]. 5 367 55.773 T 29-03-2018 IPR022859 Alginate lyase GO:0042122|GO:0042597|GO:0045135 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 Y880_RS15850 feae09c954206113ccbd66112e38169f 367 Pfam PF05426 Alginate lyase 63 303 5.7E-59 T 29-03-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 Y880_RS15850 feae09c954206113ccbd66112e38169f 367 Gene3D G3DSA:1.50.10.100 42 364 1.7E-51 T 29-03-2018 Y880_RS15850 feae09c954206113ccbd66112e38169f 367 SUPERFAMILY SSF48230 30 361 1.19E-62 T 29-03-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 Gene3D G3DSA:3.40.50.620 1 134 2.5E-29 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 Gene3D G3DSA:3.40.50.620 135 286 4.3E-28 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 Pfam PF00582 Universal stress protein family 139 282 5.3E-23 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 Pfam PF00582 Universal stress protein family 1 129 1.5E-31 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 SUPERFAMILY SSF52402 139 284 3.43E-25 T 29-03-2018 Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 SUPERFAMILY SSF52402 1 129 7.37E-31 T 29-03-2018 Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 PRINTS PR01438 Universal stress protein signature 1 18 4.7E-12 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 PRINTS PR01438 Universal stress protein signature 92 104 4.7E-12 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS20045 17825e315b10e74abb66477bbeee6a56 286 PRINTS PR01438 Universal stress protein signature 110 132 4.7E-12 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 SMART SM00421 838 895 5.9E-27 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 SUPERFAMILY SSF52540 131 233 3.69E-9 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 SUPERFAMILY SSF52540 32 101 3.69E-9 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 Gene3D G3DSA:1.25.40.10 247 606 0.031 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 Gene3D G3DSA:3.40.50.300 24 183 2.7E-8 T 29-03-2018 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 SUPERFAMILY SSF46894 834 900 7.82E-21 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 ProSitePatterns PS00622 LuxR-type HTH domain signature. 855 882 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 Pfam PF00196 Bacterial regulatory proteins, luxR family 841 895 3.7E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 871 883 4.8E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 841 855 4.8E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 855 871 4.8E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 Gene3D G3DSA:1.10.10.10 808 901 1.7E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05875 1572fe0be448cb9c7108218f76b3e625 901 Gene3D G3DSA:1.25.40.10 619 807 3.5E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS29255 e3501cda4a4d2bb7e4c6ef9802795d1c 147 Gene3D G3DSA:1.10.10.10 1 53 4.2E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29255 e3501cda4a4d2bb7e4c6ef9802795d1c 147 Gene3D G3DSA:3.30.70.920 54 139 6.6E-9 T 29-03-2018 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 216 1.6E-22 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 SUPERFAMILY SSF47203 228 379 1.01E-18 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 118 1.4E-19 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 SUPERFAMILY SSF56645 9 239 4.71E-68 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 Gene3D G3DSA:2.40.110.10 119 215 6.7E-34 T 29-03-2018 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 Gene3D G3DSA:1.10.540.10 1 118 1.8E-24 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 377 1.8E-16 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS01900 621ee84e38d395472ada55173a3fcf5e 381 Gene3D G3DSA:1.20.140.10 216 381 2.8E-33 T 29-03-2018 Y880_RS05460 d694ae8be223334ea26bd56877667370 327 SUPERFAMILY SSF53474 237 296 1.19E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05460 d694ae8be223334ea26bd56877667370 327 SUPERFAMILY SSF53474 29 176 1.19E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05460 d694ae8be223334ea26bd56877667370 327 Gene3D G3DSA:3.40.50.1820 46 326 6.3E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05460 d694ae8be223334ea26bd56877667370 327 Pfam PF12146 Serine aminopeptidase, S33 83 170 4.2E-10 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 Y880_RS26420 199e2d9fdb518c3a88a85bf60a4377f5 394 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 121 360 0.0084 T 29-03-2018 IPR020803 Polyketide synthase, methyltransferase domain Y880_RS26420 199e2d9fdb518c3a88a85bf60a4377f5 394 PIRSF PIRSF003085 1 394 6.9E-130 T 29-03-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 Y880_RS26420 199e2d9fdb518c3a88a85bf60a4377f5 394 Gene3D G3DSA:3.40.50.150 96 376 1.7E-70 T 29-03-2018 Y880_RS26420 199e2d9fdb518c3a88a85bf60a4377f5 394 SUPERFAMILY SSF53335 109 377 1.21E-85 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS26420 199e2d9fdb518c3a88a85bf60a4377f5 394 Pfam PF02353 Mycolic acid cyclopropane synthetase 98 372 3.5E-106 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 PIRSF PIRSF000193 3 270 6.0E-83 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 223 245 - T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 267 27.612 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 1.4E-37 T 29-03-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 99 2.2E-23 T 29-03-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 Gene3D G3DSA:1.10.3730.10 165 272 3.2E-41 T 29-03-2018 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 267 3.0E-80 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 SUPERFAMILY SSF48179 162 270 2.72E-35 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 Gene3D G3DSA:3.40.50.720 1 164 2.1E-36 T 29-03-2018 Y880_RS28625 29646880142d645949f6a65e3b88ccf7 273 SUPERFAMILY SSF51735 5 160 9.05E-40 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS20680 99df5bf8efb96bff7d0f71b31116827c 282 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 29-03-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site Y880_RS20680 99df5bf8efb96bff7d0f71b31116827c 282 Pfam PF00795 Carbon-nitrogen hydrolase 3 254 5.3E-50 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS20680 99df5bf8efb96bff7d0f71b31116827c 282 Gene3D G3DSA:3.60.110.10 1 271 2.0E-72 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS20680 99df5bf8efb96bff7d0f71b31116827c 282 SUPERFAMILY SSF56317 1 268 1.96E-75 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS20885 30476805c7ffb3b506652d87850d94ec 226 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 1.1E-12 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS20885 30476805c7ffb3b506652d87850d94ec 226 SUPERFAMILY SSF51197 3 174 1.21E-6 T 29-03-2018 Y880_RS20885 30476805c7ffb3b506652d87850d94ec 226 SMART SM00702 1 177 1.4E-33 T 29-03-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 Y880_RS20885 30476805c7ffb3b506652d87850d94ec 226 Gene3D G3DSA:2.60.120.620 3 187 8.5E-36 T 29-03-2018 Y880_RS20885 30476805c7ffb3b506652d87850d94ec 226 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 226 46.239 T 29-03-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 Y880_RS07460 9cd3394106bcdf327f9a033f6084b46d 602 Gene3D G3DSA:3.10.105.10 318 561 2.1E-49 T 29-03-2018 Y880_RS07460 9cd3394106bcdf327f9a033f6084b46d 602 PIRSF PIRSF002741 5 594 1.6E-104 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y880_RS07460 9cd3394106bcdf327f9a033f6084b46d 602 Gene3D G3DSA:3.90.76.10 62 204 6.6E-23 T 29-03-2018 Y880_RS07460 9cd3394106bcdf327f9a033f6084b46d 602 Gene3D G3DSA:3.40.190.10 205 317 9.5E-20 T 29-03-2018 Y880_RS07460 9cd3394106bcdf327f9a033f6084b46d 602 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 102 505 3.0E-70 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain Y880_RS07460 9cd3394106bcdf327f9a033f6084b46d 602 SUPERFAMILY SSF53850 48 590 3.8E-116 T 29-03-2018 Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 Pfam PF05175 Methyltransferase small domain 94 185 8.6E-15 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 Gene3D G3DSA:1.10.8.10 4 83 4.4E-20 T 29-03-2018 Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 SUPERFAMILY SSF53335 12 272 2.99E-52 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 22 270 3.4E-89 T 29-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 274 46.395 T 29-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 18 274 8.8E-78 T 29-03-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Y880_RS21690 26bcb93a93d1f7b8da0717c28d71f2b5 276 Gene3D G3DSA:3.40.50.150 84 275 8.3E-41 T 29-03-2018 Y880_RS19395 c28af269655c9cc260abb5c342803b73 296 Gene3D G3DSA:1.10.10.60 251 296 4.8E-14 T 29-03-2018 Y880_RS19395 c28af269655c9cc260abb5c342803b73 296 SMART SM00342 214 296 2.6E-30 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS19395 c28af269655c9cc260abb5c342803b73 296 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 292 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS19395 c28af269655c9cc260abb5c342803b73 296 SUPERFAMILY SSF46689 250 296 3.05E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS19395 c28af269655c9cc260abb5c342803b73 296 SUPERFAMILY SSF46689 198 248 5.29E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS19395 c28af269655c9cc260abb5c342803b73 296 Pfam PF12833 Helix-turn-helix domain 220 296 1.1E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS19395 c28af269655c9cc260abb5c342803b73 296 Gene3D G3DSA:1.10.10.60 195 250 2.8E-10 T 29-03-2018 Y880_RS26135 95eaa55a04ef0dcc2ea73a45f4c8535f 201 SUPERFAMILY SSF46626 105 200 5.67E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26135 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Pfam PF00034 Cytochrome c 27 100 9.8E-8 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26135 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Pfam PF00034 Cytochrome c 112 199 1.3E-7 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26135 95eaa55a04ef0dcc2ea73a45f4c8535f 201 PIRSF PIRSF000005 1 201 1.6E-62 T 29-03-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Y880_RS26135 95eaa55a04ef0dcc2ea73a45f4c8535f 201 SUPERFAMILY SSF46626 13 99 1.73E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26135 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Gene3D G3DSA:1.10.760.10 100 199 8.9E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26135 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Gene3D G3DSA:1.10.760.10 15 99 4.5E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS03160 2476316002f63fb0f816fed0beb7d424 334 Gene3D G3DSA:1.10.1530.10 2 74 1.6E-22 T 29-03-2018 Y880_RS03160 2476316002f63fb0f816fed0beb7d424 334 Gene3D G3DSA:1.10.1530.10 277 323 2.2E-5 T 29-03-2018 Y880_RS03160 2476316002f63fb0f816fed0beb7d424 334 SUPERFAMILY SSF89733 2 333 3.4E-101 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 Y880_RS03160 2476316002f63fb0f816fed0beb7d424 334 Pfam PF02615 Malate/L-lactate dehydrogenase 5 329 3.7E-101 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 Y880_RS03160 2476316002f63fb0f816fed0beb7d424 334 Gene3D G3DSA:3.30.1370.60 75 274 8.6E-75 T 29-03-2018 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Gene3D G3DSA:3.30.450.20 38 182 1.1E-18 T 29-03-2018 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Pfam PF00072 Response regulator receiver domain 448 557 1.2E-11 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 SUPERFAMILY SSF55874 257 423 9.82E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Gene3D G3DSA:1.10.287.130 207 263 8.2E-8 T 29-03-2018 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 SMART SM00388 202 267 2.2E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 SMART SM00387 311 422 1.2E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 SUPERFAMILY SSF52172 443 562 7.4E-21 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 420 6.2E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Gene3D G3DSA:3.30.450.20 183 206 0.086 T 29-03-2018 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 40 164 2.5E-10 T 29-03-2018 IPR000014 PAS domain Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 361 3.7E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 400 3.7E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 419 3.7E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 SMART SM00448 445 557 4.5E-10 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Gene3D G3DSA:3.30.565.10 271 428 5.5E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 SUPERFAMILY SSF47384 185 266 2.75E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Gene3D G3DSA:3.40.50.2300 432 564 7.4E-19 T 29-03-2018 Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 SUPERFAMILY SSF55785 30 155 2.27E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS07115 7be2f51b56a889807994e30f867eb9ee 564 Pfam PF13188 PAS domain 44 91 2.4E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS21195 e8aa95870f619f79f1c83e5da5a3e681 205 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 4 108 2.9E-24 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y880_RS21195 e8aa95870f619f79f1c83e5da5a3e681 205 Gene3D G3DSA:1.10.287.460 1 89 7.9E-22 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y880_RS21195 e8aa95870f619f79f1c83e5da5a3e681 205 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 202 3.6E-26 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y880_RS21195 e8aa95870f619f79f1c83e5da5a3e681 205 Gene3D G3DSA:3.10.50.40 90 205 6.1E-39 T 29-03-2018 Y880_RS21195 e8aa95870f619f79f1c83e5da5a3e681 205 SUPERFAMILY SSF54534 7 204 2.95E-55 T 29-03-2018 Y880_RS21625 b5628780e7640e397547e252e709872a 262 Gene3D G3DSA:2.60.40.10 31 158 7.3E-24 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS21625 b5628780e7640e397547e252e709872a 262 Gene3D G3DSA:2.60.40.10 169 254 2.6E-6 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS21625 b5628780e7640e397547e252e709872a 262 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 41 156 4.1E-17 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y880_RS21625 b5628780e7640e397547e252e709872a 262 SUPERFAMILY SSF49354 32 161 2.62E-26 T 29-03-2018 IPR008962 PapD-like Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 SUPERFAMILY SSF49503 119 278 2.43E-49 T 29-03-2018 IPR008972 Cupredoxin Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 PIRSF PIRSF000292 1 310 2.8E-137 T 29-03-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 Gene3D G3DSA:1.10.287.90 27 112 1.2E-17 T 29-03-2018 Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 Gene3D G3DSA:2.60.40.420 113 278 1.1E-49 T 29-03-2018 IPR008972 Cupredoxin Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 Pfam PF06481 COX Aromatic Rich Motif 237 282 2.2E-15 T 29-03-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 15 237 3.3E-117 T 29-03-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 SUPERFAMILY SSF81464 26 116 3.43E-23 T 29-03-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03485 9db42d394cf820ff967f97c19aa20c8e 331 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 148 217 4.9E-7 T 29-03-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS14185 1f7aa3c6f8fb235230a9508508aa7854 208 SMART SM00479 31 204 8.8E-26 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS14185 1f7aa3c6f8fb235230a9508508aa7854 208 Gene3D G3DSA:1.20.5.140 187 201 9.7E-5 T 29-03-2018 Y880_RS14185 1f7aa3c6f8fb235230a9508508aa7854 208 SUPERFAMILY SSF53098 23 201 5.2E-36 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS14185 1f7aa3c6f8fb235230a9508508aa7854 208 Gene3D G3DSA:3.30.420.10 22 186 1.0E-27 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS14185 1f7aa3c6f8fb235230a9508508aa7854 208 Pfam PF00929 Exonuclease 34 194 6.5E-19 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS19375 6469790c2e1df0b5b9587ef9daf062db 261 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS19375 6469790c2e1df0b5b9587ef9daf062db 261 SMART SM00382 45 236 1.2E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS19375 6469790c2e1df0b5b9587ef9daf062db 261 Pfam PF00005 ABC transporter 36 184 1.4E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS19375 6469790c2e1df0b5b9587ef9daf062db 261 Gene3D G3DSA:3.40.50.300 5 260 1.2E-63 T 29-03-2018 Y880_RS19375 6469790c2e1df0b5b9587ef9daf062db 261 SUPERFAMILY SSF52540 13 254 1.46E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 Pfam PF00171 Aldehyde dehydrogenase family 6 453 1.7E-123 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 SUPERFAMILY SSF53720 5 448 2.88E-120 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 Gene3D G3DSA:3.40.605.10 2 250 2.7E-73 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 Gene3D G3DSA:3.40.309.10 251 436 5.7E-45 T 29-03-2018 Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 1 479 56.624 T 29-03-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 235 242 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 263 274 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS01260 627412ab8877ca20596edf89ea8024d1 479 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 4 478 6.3E-250 T 29-03-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 SMART SM00267 239 411 1.1E-43 T 29-03-2018 IPR000160 GGDEF domain Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 SMART SM00052 421 667 2.8E-122 T 29-03-2018 IPR001633 EAL domain Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 SUPERFAMILY SSF141868 426 676 4.71E-93 T 29-03-2018 IPR001633 EAL domain Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 249 409 6.2E-29 T 29-03-2018 IPR000160 GGDEF domain Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 SUPERFAMILY SSF55073 255 411 2.2E-38 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 Gene3D G3DSA:3.30.70.270 238 412 1.8E-48 T 29-03-2018 Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 Gene3D G3DSA:3.20.20.450 413 681 3.7E-102 T 29-03-2018 IPR001633 EAL domain Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 Pfam PF00990 Diguanylate cyclase, GGDEF domain 251 407 4.0E-38 T 29-03-2018 IPR000160 GGDEF domain Y880_RS20125 bea7401e252f6b02d578cdf6e60edaa0 687 Pfam PF00563 EAL domain 427 662 2.7E-75 T 29-03-2018 IPR001633 EAL domain Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Gene3D G3DSA:1.10.357.10 63 201 1.9E-23 T 29-03-2018 Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 SUPERFAMILY SSF46689 3 80 1.03E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Gene3D G3DSA:1.10.10.60 3 62 2.8E-17 T 29-03-2018 Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.2E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.2E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 55 1.3E-16 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 SUPERFAMILY SSF48498 76 200 6.43E-43 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS04495 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Pfam PF08362 YcdC-like protein, C-terminal region 59 200 9.1E-62 T 29-03-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y880_RS10635 e01916b27c466b8a9d40dbe88b481452 331 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 329 23.413 T 29-03-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10635 e01916b27c466b8a9d40dbe88b481452 331 Pfam PF00146 NADH dehydrogenase 17 322 7.0E-115 T 29-03-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10635 e01916b27c466b8a9d40dbe88b481452 331 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 212 225 - T 29-03-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS15845 d4711c0c7d4ba60db23dde2646dcc1d4 474 Gene3D G3DSA:3.40.50.1110 46 196 7.6E-7 T 29-03-2018 Y880_RS15845 d4711c0c7d4ba60db23dde2646dcc1d4 474 Gene3D G3DSA:3.40.50.1110 228 404 0.088 T 29-03-2018 Y880_RS15845 d4711c0c7d4ba60db23dde2646dcc1d4 474 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 64 325 2.7E-84 T 29-03-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain Y880_RS15845 d4711c0c7d4ba60db23dde2646dcc1d4 474 Pfam PF16824 C-terminal carbohydrate-binding module 346 465 3.5E-57 T 29-03-2018 IPR031798 Alginate biosynthesis protein AlgX, C-terminal carbohydrate-binding module Y880_RS17220 92bc4b8aa9c363c34d095ae7e235cbe7 369 PIRSF PIRSF004640 1 362 9.5E-151 T 29-03-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y880_RS17220 92bc4b8aa9c363c34d095ae7e235cbe7 369 SUPERFAMILY SSF56014 265 352 3.27E-12 T 29-03-2018 Y880_RS17220 92bc4b8aa9c363c34d095ae7e235cbe7 369 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 5.3E-133 T 29-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y880_RS17220 92bc4b8aa9c363c34d095ae7e235cbe7 369 SUPERFAMILY SSF51717 15 207 1.49E-10 T 29-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS17220 92bc4b8aa9c363c34d095ae7e235cbe7 369 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 359 35.441 T 29-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y880_RS17220 92bc4b8aa9c363c34d095ae7e235cbe7 369 Gene3D G3DSA:3.20.20.120 13 184 1.0E-20 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS17220 92bc4b8aa9c363c34d095ae7e235cbe7 369 Pfam PF04551 GcpE protein 13 352 7.8E-137 T 29-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y880_RS26325 3cdb7f519f46d2de945a2382f6694058 133 SUPERFAMILY SSF160631 2 132 2.49E-42 T 29-03-2018 Y880_RS26325 3cdb7f519f46d2de945a2382f6694058 133 Pfam PF14567 SMI1-KNR4 cell-wall 2 131 1.3E-42 T 29-03-2018 Y880_RS26325 3cdb7f519f46d2de945a2382f6694058 133 Gene3D G3DSA:3.40.1580.10 1 133 9.2E-16 T 29-03-2018 Y880_RS26325 3cdb7f519f46d2de945a2382f6694058 133 SMART SM00860 21 128 0.0026 T 29-03-2018 IPR018958 Knr4/Smi1-like domain Y880_RS07365 15807e2a392212a5d6efae2a132b5f06 456 Pfam PF00324 Amino acid permease 22 380 3.6E-38 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS07365 15807e2a392212a5d6efae2a132b5f06 456 PIRSF PIRSF006060 1 454 2.7E-78 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS16485 0e402fff6a7eb21519c1b87c14246f14 344 Gene3D G3DSA:2.160.10.10 173 341 1.7E-13 T 29-03-2018 Y880_RS16485 0e402fff6a7eb21519c1b87c14246f14 344 TIGRFAM TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 5 344 1.3E-186 T 29-03-2018 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria KEGG: 00300+2.3.1.117 Y880_RS16485 0e402fff6a7eb21519c1b87c14246f14 344 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 132 172 1.1E-15 T 29-03-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 Y880_RS16485 0e402fff6a7eb21519c1b87c14246f14 344 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 254 286 3.8E-12 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS16485 0e402fff6a7eb21519c1b87c14246f14 344 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 4 341 44.298 T 29-03-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 Y880_RS16485 0e402fff6a7eb21519c1b87c14246f14 344 SUPERFAMILY SSF51161 101 306 3.33E-37 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS16485 0e402fff6a7eb21519c1b87c14246f14 344 Gene3D G3DSA:3.30.60.70 132 172 7.5E-15 T 29-03-2018 Y880_RS21970 59a733e2ff1e2d557be86e79b0124e55 259 SUPERFAMILY SSF48452 159 255 1.28E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS21970 59a733e2ff1e2d557be86e79b0124e55 259 Gene3D G3DSA:1.25.40.10 60 259 1.7E-11 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS22525 32f3d3775658042b133de4baab33aa58 465 PIRSF PIRSF006060 1 458 9.8E-72 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS22525 32f3d3775658042b133de4baab33aa58 465 Pfam PF13520 Amino acid permease 14 435 3.8E-52 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS15465 37d32de6f9ab58c576340a51f7bffc39 180 Pfam PF01872 RibD C-terminal domain 93 166 9.3E-14 T 29-03-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Y880_RS15465 37d32de6f9ab58c576340a51f7bffc39 180 Gene3D G3DSA:3.40.430.10 4 173 2.5E-40 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Y880_RS15465 37d32de6f9ab58c576340a51f7bffc39 180 SUPERFAMILY SSF53597 3 174 1.09E-38 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 SUPERFAMILY SSF50129 1 96 5.56E-34 T 29-03-2018 IPR011032 GroES-like Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 26.57 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 25 46 2.9E-31 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 3 18 2.9E-31 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 60 72 2.9E-31 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 82 95 2.9E-31 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 29-03-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 Gene3D G3DSA:2.30.33.40 1 96 3.5E-36 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 4.4E-32 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS20225 5346c5c2f4ce088d6e5028068f1e4220 97 SMART SM00883 2 95 9.5E-56 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y880_RS22850 4c11d990bb9696ffbbc0dcfd518cca18 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 99 1.5E-45 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22850 4c11d990bb9696ffbbc0dcfd518cca18 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.995 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22850 4c11d990bb9696ffbbc0dcfd518cca18 101 Gene3D G3DSA:2.10.150.10 1 101 7.1E-47 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22850 4c11d990bb9696ffbbc0dcfd518cca18 101 SUPERFAMILY SSF51278 1 101 1.06E-47 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22850 4c11d990bb9696ffbbc0dcfd518cca18 101 Pfam PF00699 Urease beta subunit 3 99 8.5E-46 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS11735 9c656cdedcc30a3457d3c5abcee99e18 538 SUPERFAMILY SSF53335 19 216 6.64E-55 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS11735 9c656cdedcc30a3457d3c5abcee99e18 538 SUPERFAMILY SSF53335 382 529 6.64E-55 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS11735 9c656cdedcc30a3457d3c5abcee99e18 538 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 83 95 - T 29-03-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-5334118 Y880_RS11735 9c656cdedcc30a3457d3c5abcee99e18 538 Pfam PF00145 C-5 cytosine-specific DNA methylase 21 209 1.6E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS11735 9c656cdedcc30a3457d3c5abcee99e18 538 Pfam PF00145 C-5 cytosine-specific DNA methylase 471 525 1.6E-6 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS11735 9c656cdedcc30a3457d3c5abcee99e18 538 Gene3D G3DSA:3.90.120.10 372 513 7.5E-11 T 29-03-2018 Y880_RS11735 9c656cdedcc30a3457d3c5abcee99e18 538 Gene3D G3DSA:3.40.50.150 17 226 1.3E-40 T 29-03-2018 Y880_RS11155 9194027d1cbbebbe905d90106f8975fd 338 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 337 2.4E-107 T 29-03-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Y880_RS11155 9194027d1cbbebbe905d90106f8975fd 338 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 337 50.826 T 29-03-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 Y880_RS11155 9194027d1cbbebbe905d90106f8975fd 338 Pfam PF01409 tRNA synthetases class II core domain (F) 92 337 6.9E-109 T 29-03-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 Y880_RS11155 9194027d1cbbebbe905d90106f8975fd 338 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 6.7E-28 T 29-03-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Y880_RS11155 9194027d1cbbebbe905d90106f8975fd 338 SUPERFAMILY SSF46589 13 99 1.46E-23 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 Y880_RS11155 9194027d1cbbebbe905d90106f8975fd 338 SUPERFAMILY SSF55681 92 338 2.68E-82 T 29-03-2018 Y880_RS11155 9194027d1cbbebbe905d90106f8975fd 338 Gene3D G3DSA:3.30.930.10 7 338 1.1E-93 T 29-03-2018 Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 SUPERFAMILY SSF56801 19 643 4.84E-127 T 29-03-2018 Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 Pfam PF00501 AMP-binding enzyme 95 525 3.1E-43 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 36 91 1.8E-11 T 29-03-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 2 651 2.4E-276 T 29-03-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 Gene3D G3DSA:3.30.300.30 521 626 1.9E-13 T 29-03-2018 Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 Gene3D G3DSA:3.40.50.980 275 433 1.1E-21 T 29-03-2018 Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 ProSitePatterns PS00455 Putative AMP-binding domain signature. 269 280 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS07140 7f2f32ac9df6e7b5891945ad76183daf 651 Gene3D G3DSA:3.40.50.980 85 274 1.1E-32 T 29-03-2018 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 Pfam PF00406 Adenylate kinase 5 185 1.3E-56 T 29-03-2018 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 SUPERFAMILY SSF52540 1 212 1.01E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 81 97 5.1E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 4 17 5.1E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 32 46 5.1E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 156 171 5.1E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 173 187 5.1E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 Gene3D G3DSA:3.40.50.300 1 215 2.5E-65 T 29-03-2018 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 Hamap MF_00235 Adenylate kinase [adk]. 1 215 53.753 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.2E-16 T 29-03-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 TIGRFAM TIGR01351 adk: adenylate kinase 2 214 1.5E-77 T 29-03-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Y880_RS16585 f0dc0c5191739deb9736065f8027b3d9 215 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 29-03-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y880_RS16335 6846301b4aecd2a86a8fbb98a1f823c5 281 Pfam PF00793 DAHP synthetase I family 9 273 2.3E-80 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y880_RS16335 6846301b4aecd2a86a8fbb98a1f823c5 281 Gene3D G3DSA:3.20.20.70 17 277 1.9E-65 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS16335 6846301b4aecd2a86a8fbb98a1f823c5 281 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 275 48.256 T 29-03-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y880_RS16335 6846301b4aecd2a86a8fbb98a1f823c5 281 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 273 1.4E-114 T 29-03-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y880_RS16335 6846301b4aecd2a86a8fbb98a1f823c5 281 SUPERFAMILY SSF51569 3 277 1.01E-101 T 29-03-2018 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 SMART SM01232 130 222 6.8E-46 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 SMART SM00898 2 116 1.5E-55 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 1.6E-33 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 SUPERFAMILY SSF81624 2 135 1.15E-40 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 6.4E-9 T 29-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 SUPERFAMILY SSF57716 218 269 1.17E-16 T 29-03-2018 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 5.2E-23 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 44.769 T 29-03-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 Gene3D G3DSA:1.10.8.50 132 270 1.6E-46 T 29-03-2018 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 SUPERFAMILY SSF46946 131 222 1.09E-27 T 29-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 Gene3D G3DSA:3.20.190.10 1 131 8.9E-40 T 29-03-2018 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 29-03-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 Y880_RS28435 e454116f66a25fd6e3c6691e7bcb9837 270 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 1.1E-91 T 29-03-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Y880_RS17890 d912f53e0cba7543cc2ceb533e6d21ba 259 Pfam PF03180 NLPA lipoprotein 25 259 1.6E-101 T 29-03-2018 IPR004872 Lipoprotein NlpA family Y880_RS17890 d912f53e0cba7543cc2ceb533e6d21ba 259 SUPERFAMILY SSF53850 23 259 3.16E-85 T 29-03-2018 Y880_RS17890 d912f53e0cba7543cc2ceb533e6d21ba 259 Gene3D G3DSA:3.40.190.10 20 117 8.6E-24 T 29-03-2018 Y880_RS17890 d912f53e0cba7543cc2ceb533e6d21ba 259 PIRSF PIRSF002854 1 259 1.2E-103 T 29-03-2018 IPR004872 Lipoprotein NlpA family Y880_RS17890 d912f53e0cba7543cc2ceb533e6d21ba 259 Gene3D G3DSA:3.40.190.10 118 259 5.4E-56 T 29-03-2018 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 ProSitePatterns PS00711 Lipoxygenases iron-binding region signature 1. 372 386 - T 29-03-2018 IPR020833 Lipoxygenase, iron binding site GO:0016702|GO:0046872|GO:0055114 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 SUPERFAMILY SSF48484 197 685 1.96E-136 T 29-03-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 Pfam PF00305 Lipoxygenase 226 667 2.5E-60 T 29-03-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 ProSitePatterns PS00081 Lipoxygenases iron-binding region signature 2. 399 409 - T 29-03-2018 IPR020834 Lipoxygenase, conserved site GO:0016702|GO:0046872|GO:0055114 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 Gene3D G3DSA:1.20.245.10 369 685 4.1E-86 T 29-03-2018 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 Gene3D G3DSA:3.10.450.60 245 368 7.4E-23 T 29-03-2018 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 PRINTS PR00087 Lipoxygenase signature 392 412 4.5E-8 T 29-03-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 PRINTS PR00087 Lipoxygenase signature 354 371 4.5E-8 T 29-03-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y880_RS02725 7634aa7c6d3fb465d3b6dd77112b40ba 685 PRINTS PR00087 Lipoxygenase signature 372 389 4.5E-8 T 29-03-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 Gene3D G3DSA:3.20.20.450 333 587 1.8E-89 T 29-03-2018 IPR001633 EAL domain Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 Pfam PF00563 EAL domain 341 575 7.1E-70 T 29-03-2018 IPR001633 EAL domain Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 SUPERFAMILY SSF55073 172 308 5.73E-9 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 Pfam PF01590 GAF domain 28 157 1.1E-7 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 SMART SM00267 152 324 6.3E-4 T 29-03-2018 IPR000160 GGDEF domain Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 SUPERFAMILY SSF55781 28 164 5.1E-24 T 29-03-2018 IPR029016 GAF domain-like Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 Gene3D G3DSA:3.30.70.270 181 332 1.8E-15 T 29-03-2018 Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 SUPERFAMILY SSF141868 349 586 3.01E-80 T 29-03-2018 IPR001633 EAL domain Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 Gene3D G3DSA:3.30.450.40 22 180 1.9E-23 T 29-03-2018 IPR029016 GAF domain-like Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 SMART SM00065 26 169 0.0024 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 Pfam PF00990 Diguanylate cyclase, GGDEF domain 167 293 3.0E-6 T 29-03-2018 IPR000160 GGDEF domain Y880_RS10215 36ad2a22d060c8229c29a9a2c4fc5d01 587 SMART SM00052 334 580 3.4E-96 T 29-03-2018 IPR001633 EAL domain Y880_RS24245 478672af0cd6af06e1ebcd3c45cd6666 257 Gene3D G3DSA:3.20.20.370 24 245 1.5E-77 T 29-03-2018 Y880_RS24245 478672af0cd6af06e1ebcd3c45cd6666 257 Pfam PF04748 Divergent polysaccharide deacetylase 35 241 2.2E-72 T 29-03-2018 IPR006837 Divergent polysaccharide deacetylase Y880_RS24245 478672af0cd6af06e1ebcd3c45cd6666 257 SUPERFAMILY SSF88713 31 242 1.22E-65 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS12360 6bd4efe9d2db2d96a36c64bfb527899a 213 Pfam PF06041 Bacterial protein of unknown function (DUF924) 45 210 3.0E-49 T 29-03-2018 IPR010323 Protein of unknown function DUF924 Y880_RS12360 6bd4efe9d2db2d96a36c64bfb527899a 213 Gene3D G3DSA:1.20.58.320 35 113 6.2E-17 T 29-03-2018 Y880_RS12360 6bd4efe9d2db2d96a36c64bfb527899a 213 SUPERFAMILY SSF48452 39 209 4.55E-59 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS12360 6bd4efe9d2db2d96a36c64bfb527899a 213 Gene3D G3DSA:1.25.40.10 114 212 5.5E-32 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS01700 046fbe0ec5e5f47afbe2eba90a5b3625 429 Gene3D G3DSA:1.10.443.10 112 305 1.4E-27 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS01700 046fbe0ec5e5f47afbe2eba90a5b3625 429 Gene3D G3DSA:1.10.150.130 1 111 8.9E-12 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal Y880_RS01700 046fbe0ec5e5f47afbe2eba90a5b3625 429 Pfam PF00589 Phage integrase family 145 296 6.3E-24 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS01700 046fbe0ec5e5f47afbe2eba90a5b3625 429 SUPERFAMILY SSF56349 1 303 4.12E-39 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y880_RS17960 2278c9a0e27365f87d3bb55b556e554e 192 Gene3D G3DSA:3.40.630.30 2 192 1.2E-26 T 29-03-2018 Y880_RS17960 2278c9a0e27365f87d3bb55b556e554e 192 SUPERFAMILY SSF55729 11 159 2.61E-39 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS17960 2278c9a0e27365f87d3bb55b556e554e 192 Pfam PF13302 Acetyltransferase (GNAT) domain 17 158 1.8E-33 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 Pfam PF13555 P-loop containing region of AAA domain 26 67 3.4E-7 T 29-03-2018 Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 Gene3D G3DSA:3.40.50.300 929 1210 7.3E-17 T 29-03-2018 Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 SUPERFAMILY SSF52540 892 991 6.78E-18 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 SUPERFAMILY SSF52540 1059 1203 6.78E-18 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1100 1169 2.4E-12 T 29-03-2018 Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 Gene3D G3DSA:1.20.120.330 615 777 2.2E-5 T 29-03-2018 Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 Gene3D G3DSA:1.20.120.330 790 928 0.0019 T 29-03-2018 Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 Gene3D G3DSA:3.40.50.300 1 256 1.1E-30 T 29-03-2018 Y880_RS19685 a8799e4d1d873d4801723e0a909a6dfe 1211 SUPERFAMILY SSF52540 1 288 1.78E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 Pfam PF08245 Mur ligase middle domain 120 299 9.7E-28 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 SUPERFAMILY SSF51984 16 102 4.05E-29 T 29-03-2018 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 Gene3D G3DSA:3.40.1190.10 104 320 6.5E-51 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 SUPERFAMILY SSF53244 319 468 8.79E-47 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 Pfam PF01225 Mur ligase family, catalytic domain 17 115 3.8E-27 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 Gene3D G3DSA:3.40.50.720 2 103 5.3E-17 T 29-03-2018 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 15 472 43.794 T 29-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 410 8.7E-21 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 SUPERFAMILY SSF53623 101 318 1.27E-74 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 17 466 9.8E-170 T 29-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20355 72cd9eeddaa81b9875c63e82b7bdbd70 480 Gene3D G3DSA:3.90.190.20 321 470 9.5E-36 T 29-03-2018 Y880_RS13310 88734f9d33a3cbe947e3941217cfc055 507 SUPERFAMILY SSF53756 157 217 7.33E-59 T 29-03-2018 Y880_RS13310 88734f9d33a3cbe947e3941217cfc055 507 SUPERFAMILY SSF53756 247 502 7.33E-59 T 29-03-2018 Y880_RS13310 88734f9d33a3cbe947e3941217cfc055 507 SUPERFAMILY SSF53756 16 59 7.33E-59 T 29-03-2018 Y880_RS13310 88734f9d33a3cbe947e3941217cfc055 507 Gene3D G3DSA:3.40.50.2000 309 488 7.5E-34 T 29-03-2018 Y880_RS13310 88734f9d33a3cbe947e3941217cfc055 507 Gene3D G3DSA:3.40.50.2000 86 308 5.4E-10 T 29-03-2018 Y880_RS13310 88734f9d33a3cbe947e3941217cfc055 507 Pfam PF13692 Glycosyl transferases group 1 318 468 6.6E-22 T 29-03-2018 Y880_RS13310 88734f9d33a3cbe947e3941217cfc055 507 Pfam PF11997 Domain of unknown function (DUF3492) 12 290 4.4E-92 T 29-03-2018 IPR022622 Domain of unknown function DUF3492 Y880_RS14035 299cb11e9fbae1bb6567a876267edb2a 99 Gene3D G3DSA:3.30.70.1060 1 98 1.8E-26 T 29-03-2018 Y880_RS14035 299cb11e9fbae1bb6567a876267edb2a 99 SUPERFAMILY SSF54909 1 97 2.15E-30 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS14035 299cb11e9fbae1bb6567a876267edb2a 99 Pfam PF03795 YCII-related domain 1 95 5.3E-30 T 29-03-2018 IPR005545 YCII-related Y880_RS11045 1b9fe15ab757b5ca8d0c1e9efe10ba5e 159 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 119 1.2E-46 T 29-03-2018 IPR028973 PhnB-like Y880_RS11045 1b9fe15ab757b5ca8d0c1e9efe10ba5e 159 Gene3D G3DSA:3.10.180.10 1 131 2.7E-16 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS11045 1b9fe15ab757b5ca8d0c1e9efe10ba5e 159 SUPERFAMILY SSF54593 4 157 3.3E-48 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS11045 1b9fe15ab757b5ca8d0c1e9efe10ba5e 159 PIRSF PIRSF021700 1 159 1.3E-68 T 29-03-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 SMART SM00342 103 184 1.5E-6 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 PIRSF PIRSF000409 1 357 1.1E-147 T 29-03-2018 IPR016221 Bifunctional regulatory protein Ada Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 272 350 1.8E-33 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 321 327 - T 29-03-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Gene3D G3DSA:1.10.10.60 140 192 7.4E-4 T 29-03-2018 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Gene3D G3DSA:3.40.10.10 11 81 3.9E-22 T 29-03-2018 IPR035451 Ada-like domain Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Gene3D G3DSA:3.30.160.70 193 266 2.3E-9 T 29-03-2018 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 SUPERFAMILY SSF57884 9 87 5.89E-31 T 29-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Gene3D G3DSA:1.10.10.10 267 352 1.9E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Pfam PF02805 Metal binding domain of Ada 16 78 3.8E-27 T 29-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Gene3D G3DSA:1.10.10.60 89 139 3.4E-7 T 29-03-2018 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Pfam PF12833 Helix-turn-helix domain 110 186 2.8E-15 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 SUPERFAMILY SSF53155 191 274 2.16E-9 T 29-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 SUPERFAMILY SSF46767 271 351 1.09E-29 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS16130 c3dea092003c17b1fcab256dcc53f422 357 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 272 351 8.3E-30 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y880_RS27305 391542e997b54db9f0d3f8f6c2dfe289 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 282 5.4E-38 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS27305 391542e997b54db9f0d3f8f6c2dfe289 308 Gene3D G3DSA:1.10.3470.10 3 292 8.7E-36 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS09980 8916826e5b9a236553662b1abcef8bf9 499 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 475 5.0E-129 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS09980 8916826e5b9a236553662b1abcef8bf9 499 Pfam PF02321 Outer membrane efflux protein 292 473 1.8E-30 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS09980 8916826e5b9a236553662b1abcef8bf9 499 Pfam PF02321 Outer membrane efflux protein 73 266 1.1E-28 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS09980 8916826e5b9a236553662b1abcef8bf9 499 Gene3D G3DSA:1.20.1600.10 19 481 5.5E-113 T 29-03-2018 Y880_RS09980 8916826e5b9a236553662b1abcef8bf9 499 SUPERFAMILY SSF56954 2 478 9.29E-119 T 29-03-2018 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 Gene3D G3DSA:3.50.50.60 239 301 5.3E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 Gene3D G3DSA:3.50.50.60 302 379 1.1E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 20 126 3.2E-33 T 29-03-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 372 388 2.7E-19 T 29-03-2018 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 294 2.7E-19 T 29-03-2018 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 162 2.7E-19 T 29-03-2018 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 401 423 2.7E-19 T 29-03-2018 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 296 1.2E-9 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 164 1.2E-9 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 411 429 1.2E-9 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 SUPERFAMILY SSF51971 139 381 7.65E-51 T 29-03-2018 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 Gene3D G3DSA:3.50.50.60 380 455 2.1E-11 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 Gene3D G3DSA:1.10.1060.10 9 140 2.4E-31 T 29-03-2018 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 141 437 5.7E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 SUPERFAMILY SSF46548 15 151 1.52E-27 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y880_RS28875 c93602b30e34d0859f41da3c36ac31bf 455 Gene3D G3DSA:3.40.50.720 141 238 9.4E-17 T 29-03-2018 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 SUPERFAMILY SSF55124 38 122 1.96E-16 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 SUPERFAMILY SSF56014 133 287 2.76E-20 T 29-03-2018 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 Gene3D G3DSA:3.90.480.10 220 374 2.8E-24 T 29-03-2018 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 SUPERFAMILY SSF55124 245 372 5.72E-24 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 132 274 2.6E-14 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 45 392 2.5E-93 T 29-03-2018 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 62 118 9.6E-11 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 302 360 8.3E-15 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS12505 cc040a2f2b4b9885c762c13be2fabc4b 392 Gene3D G3DSA:3.90.480.10 62 208 2.9E-19 T 29-03-2018 Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 170 215 5.8E-5 T 29-03-2018 Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 SUPERFAMILY SSF48498 98 181 1.78E-7 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 74 9.6E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 Gene3D G3DSA:1.10.357.10 75 221 2.9E-22 T 29-03-2018 Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 SUPERFAMILY SSF46689 24 90 9.48E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 Gene3D G3DSA:1.10.10.60 1 74 1.4E-16 T 29-03-2018 Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 4.4E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS11995 ddb9eb813b58652ea478fe12de6884b8 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 4.4E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16220 31b87bb53447e3901f1988408f95020b 467 Pfam PF00753 Metallo-beta-lactamase superfamily 13 227 6.6E-12 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS16220 31b87bb53447e3901f1988408f95020b 467 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 397 459 2.7E-16 T 29-03-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Y880_RS16220 31b87bb53447e3901f1988408f95020b 467 Gene3D G3DSA:3.60.15.10 2 275 2.5E-50 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS16220 31b87bb53447e3901f1988408f95020b 467 SUPERFAMILY SSF56281 3 467 2.17E-130 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS16220 31b87bb53447e3901f1988408f95020b 467 SMART SM01027 255 383 2.6E-56 T 29-03-2018 IPR022712 Beta-Casp domain Y880_RS16220 31b87bb53447e3901f1988408f95020b 467 SMART SM00849 14 250 2.1E-25 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS16220 31b87bb53447e3901f1988408f95020b 467 Pfam PF10996 Beta-Casp domain 255 383 8.5E-26 T 29-03-2018 IPR022712 Beta-Casp domain Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.547 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 Gene3D G3DSA:1.10.1200.10 1 78 5.1E-28 T 29-03-2018 Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 8.9E-37 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 SMART SM00823 Phosphopantetheine attachment site 5 77 0.0084 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 9.0E-13 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.7E-17 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS12820 bf67608ca7d265aa4d65a517423f7750 78 SUPERFAMILY SSF47336 2 77 3.14E-24 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 Pfam PF03486 HI0933-like protein 11 403 4.5E-111 T 29-03-2018 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 SUPERFAMILY SSF51905 12 200 8.17E-45 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 SUPERFAMILY SSF51905 349 408 8.17E-45 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 12 402 7.2E-86 T 29-03-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 SUPERFAMILY SSF160996 210 350 6.54E-11 T 29-03-2018 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 Gene3D G3DSA:3.50.50.60 11 404 8.6E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 9.5E-5 T 29-03-2018 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 373 380 9.5E-5 T 29-03-2018 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 165 174 9.5E-5 T 29-03-2018 Y880_RS17990 f7f9ca691c7d718d9147e283e4e0155d 413 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 33 409 1.9E-160 T 29-03-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 Y880_RS12935 0265ee7715a479146d7bbc4e015131c4 416 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 416 1.3E-161 T 29-03-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 Y880_RS12935 0265ee7715a479146d7bbc4e015131c4 416 Pfam PF12704 MacB-like periplasmic core domain 27 232 1.3E-16 T 29-03-2018 IPR025857 MacB-like periplasmic core domain Y880_RS12935 0265ee7715a479146d7bbc4e015131c4 416 Pfam PF02687 FtsX-like permease family 301 409 4.4E-14 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y880_RS23140 b79825904463a3bb0fc4779b636c0e63 283 SUPERFAMILY SSF82689 182 279 2.09E-16 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y880_RS23140 b79825904463a3bb0fc4779b636c0e63 283 SUPERFAMILY SSF50182 115 180 9.15E-16 T 29-03-2018 IPR010920 LSM domain Y880_RS23140 b79825904463a3bb0fc4779b636c0e63 283 SUPERFAMILY SSF82861 29 112 1.11E-15 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y880_RS23140 b79825904463a3bb0fc4779b636c0e63 283 Gene3D G3DSA:2.30.30.60 130 179 6.2E-14 T 29-03-2018 Y880_RS23140 b79825904463a3bb0fc4779b636c0e63 283 Gene3D G3DSA:3.30.70.100 180 271 2.0E-8 T 29-03-2018 Y880_RS23140 b79825904463a3bb0fc4779b636c0e63 283 Pfam PF00924 Mechanosensitive ion channel 74 262 3.3E-36 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 ProSitePatterns PS00042 Crp-type HTH domain signature. 190 213 - T 29-03-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 SUPERFAMILY SSF46785 161 239 3.11E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 Gene3D G3DSA:2.60.120.10 31 159 1.5E-19 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 SUPERFAMILY SSF51206 18 157 4.32E-31 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 Pfam PF00027 Cyclic nucleotide-binding domain 45 129 4.6E-16 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 Gene3D G3DSA:1.10.10.10 160 243 6.6E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 204 219 9.9E-12 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 188 204 9.9E-12 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 Pfam PF00325 Bacterial regulatory proteins, crp family 188 219 9.8E-17 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 SMART SM00419 182 230 3.6E-16 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS04735 cbf5001cdb797fd5836264fd1665a83d 244 SMART SM00100 25 146 1.4E-19 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS28605 49d5076b27c73e65b1996471f8c543ca 379 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 8 376 50.562 T 29-03-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 Y880_RS28605 49d5076b27c73e65b1996471f8c543ca 379 SUPERFAMILY SSF53474 13 375 9.76E-101 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS28605 49d5076b27c73e65b1996471f8c543ca 379 Pfam PF00561 alpha/beta hydrolase fold 51 360 1.3E-31 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS28605 49d5076b27c73e65b1996471f8c543ca 379 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 21 370 1.1E-136 T 29-03-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 Y880_RS28605 49d5076b27c73e65b1996471f8c543ca 379 Gene3D G3DSA:3.40.50.1820 30 376 1.5E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS28605 49d5076b27c73e65b1996471f8c543ca 379 PIRSF PIRSF000443 2 379 2.3E-132 T 29-03-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 SUPERFAMILY SSF56322 66 390 1.07E-66 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00097 Anthranilate synthase component II signature 511 522 3.6E-8 T 29-03-2018 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00097 Anthranilate synthase component II signature 597 610 3.6E-8 T 29-03-2018 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00097 Anthranilate synthase component II signature 437 451 3.6E-8 T 29-03-2018 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Gene3D G3DSA:3.60.120.10 3 392 1.3E-79 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Pfam PF00117 Glutamine amidotransferase class-I 439 618 1.6E-25 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 511 522 2.8E-9 T 29-03-2018 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 478 487 2.8E-9 T 29-03-2018 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 597 610 2.8E-9 T 29-03-2018 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Pfam PF00425 chorismate binding enzyme 122 381 5.5E-47 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Gene3D G3DSA:3.40.50.880 435 626 6.2E-31 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 SUPERFAMILY SSF52317 437 624 1.12E-22 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 475 489 5.7E-5 T 29-03-2018 Y880_RS06665 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 511 527 5.7E-5 T 29-03-2018 Y880_RS16225 4c8a04745a07ea962dd2b7858ace3c21 356 SUPERFAMILY SSF102405 68 263 6.87E-47 T 29-03-2018 Y880_RS16225 4c8a04745a07ea962dd2b7858ace3c21 356 Pfam PF03641 Possible lysine decarboxylase 131 263 3.5E-29 T 29-03-2018 IPR031100 LOG family Y880_RS16225 4c8a04745a07ea962dd2b7858ace3c21 356 Gene3D G3DSA:3.40.50.450 61 350 3.3E-78 T 29-03-2018 Y880_RS30000 eaf8eb7eb462cd02b843d5f4269333ca 322 Gene3D G3DSA:3.20.20.70 4 317 1.2E-42 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS30000 eaf8eb7eb462cd02b843d5f4269333ca 322 SUPERFAMILY SSF51412 6 305 8.97E-59 T 29-03-2018 Y880_RS30000 eaf8eb7eb462cd02b843d5f4269333ca 322 Pfam PF03060 Nitronate monooxygenase 89 302 1.5E-27 T 29-03-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 29-03-2018 IPR025505 FHIPEP conserved site Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 Pfam PF00771 FHIPEP family 31 696 2.2E-267 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 704 4.3E-261 T 29-03-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 1.5E-55 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 1.5E-55 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 1.5E-55 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 1.5E-55 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 1.5E-55 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 1.5E-55 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS04230 568e3e52fe935e2cea711c9c8910f812 707 PIRSF PIRSF005419 7 707 1.6E-248 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 Gene3D G3DSA:3.40.190.10 92 173 1.8E-19 T 29-03-2018 Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 SUPERFAMILY SSF46785 1 86 3.76E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 Pfam PF03466 LysR substrate binding domain 87 290 3.5E-45 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.1E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 SUPERFAMILY SSF53850 90 290 9.78E-41 T 29-03-2018 Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 Gene3D G3DSA:1.10.10.10 1 91 7.6E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 Gene3D G3DSA:3.40.190.10 174 263 8.8E-22 T 29-03-2018 Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.7E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.7E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15280 4d804b8f3289eee34275510bbabbe433 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.7E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10735 2a7cbc19f7b34de80cfb2c1ba3d3b21e 88 ProDom PD031420 YFEK EXPORTED PRECURSOR SIGNAL PERIPLASMIC ECS3291 XCC0326 1 67 2.0E-17 T 29-03-2018 IPR035242 Protein of unknown function DUF5329 Y880_RS10735 2a7cbc19f7b34de80cfb2c1ba3d3b21e 88 Pfam PF17263 Family of unknown function (DUF5329) 1 85 1.1E-32 T 29-03-2018 IPR035242 Protein of unknown function DUF5329 Y880_RS09395 c295f2f5e9973a73393998c01eaca77a 301 Pfam PF00950 ABC 3 transport family 27 286 2.7E-51 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Y880_RS09395 c295f2f5e9973a73393998c01eaca77a 301 SUPERFAMILY SSF81345 19 283 3.79E-32 T 29-03-2018 IPR029022 ABC transporter, BtuC-like Y880_RS09395 c295f2f5e9973a73393998c01eaca77a 301 Gene3D G3DSA:1.10.3470.10 4 291 1.7E-24 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS16080 65952213c8573602d8832ec163150aad 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.7E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16080 65952213c8573602d8832ec163150aad 306 Gene3D G3DSA:3.40.190.10 89 180 1.3E-20 T 29-03-2018 Y880_RS16080 65952213c8573602d8832ec163150aad 306 SUPERFAMILY SSF46785 1 112 8.84E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16080 65952213c8573602d8832ec163150aad 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16080 65952213c8573602d8832ec163150aad 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16080 65952213c8573602d8832ec163150aad 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16080 65952213c8573602d8832ec163150aad 306 Gene3D G3DSA:3.40.190.10 181 268 1.7E-14 T 29-03-2018 Y880_RS16080 65952213c8573602d8832ec163150aad 306 SUPERFAMILY SSF53850 88 287 5.43E-36 T 29-03-2018 Y880_RS16080 65952213c8573602d8832ec163150aad 306 Pfam PF03466 LysR substrate binding domain 88 287 4.0E-37 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS16080 65952213c8573602d8832ec163150aad 306 Gene3D G3DSA:1.10.10.10 1 84 5.0E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18080 5dec418e6eecf9313b0989b71b9ae05e 130 SUPERFAMILY SSF46458 5 130 3.2E-34 T 29-03-2018 IPR009050 Globin-like Y880_RS18080 5dec418e6eecf9313b0989b71b9ae05e 130 Gene3D G3DSA:1.10.490.10 3 127 5.0E-18 T 29-03-2018 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:1.10.1420.10 407 534 6.7E-32 T 29-03-2018 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:3.30.420.110 132 262 3.8E-28 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:3.40.50.300 566 818 1.2E-41 T 29-03-2018 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF53150 114 266 9.16E-44 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF05190 MutS family domain IV 427 517 2.6E-29 T 29-03-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF55271 3 115 6.28E-43 T 29-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF00488 MutS domain V 609 795 4.9E-85 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:1.10.1420.10 263 406 1.9E-34 T 29-03-2018 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 SMART SM00534 606 792 1.4E-121 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 687 703 - T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF48334 267 564 7.06E-85 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF01624 MutS domain I 8 119 1.6E-42 T 29-03-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF05192 MutS domain III 270 558 2.9E-38 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 7 847 25.303 T 29-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:3.40.1170.10 1 131 3.9E-47 T 29-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 PIRSF PIRSF037677 200 833 8.6E-124 T 29-03-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 PIRSF PIRSF037677 2 180 3.3E-27 T 29-03-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 SMART SM00533 283 590 6.2E-109 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 7 852 0.0 T 29-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF52540 568 795 9.11E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16255 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF05188 MutS domain II 128 253 4.3E-31 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 SUPERFAMILY SSF53623 97 326 6.41E-77 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 Pfam PF08245 Mur ligase middle domain 106 306 2.3E-51 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 Gene3D G3DSA:3.90.190.20 333 486 1.0E-46 T 29-03-2018 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 Pfam PF01225 Mur ligase family, catalytic domain 18 94 6.1E-12 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 SUPERFAMILY SSF53244 329 480 5.95E-47 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 Gene3D G3DSA:3.40.1390.10 3 96 5.9E-22 T 29-03-2018 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 17 479 2.2E-155 T 29-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 479 35.031 T 29-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 SUPERFAMILY SSF63418 11 95 6.28E-21 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 Gene3D G3DSA:3.40.1190.10 97 331 1.6E-56 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20385 da32671baca46154d92bd53fed7cb036 487 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 412 4.8E-22 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS24460 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 Gene3D G3DSA:3.40.47.10 64 385 5.0E-35 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS24460 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 SMART SM00825 Beta-ketoacyl synthase 5 549 0.0015 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Y880_RS24460 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 SUPERFAMILY SSF53901 154 380 8.3E-30 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS24460 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 382 496 1.1E-10 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Y880_RS24460 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 Gene3D G3DSA:3.40.47.10 389 550 1.8E-28 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS24460 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 182 371 9.1E-13 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Y880_RS24460 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 SUPERFAMILY SSF53901 344 546 2.99E-30 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 2.0E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 SUPERFAMILY SSF46689 3 80 3.13E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 Gene3D G3DSA:1.10.10.60 2 62 7.9E-16 T 29-03-2018 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 Gene3D G3DSA:1.10.357.10 63 201 1.1E-24 T 29-03-2018 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.1E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.1E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 Pfam PF08362 YcdC-like protein, C-terminal region 59 199 3.9E-51 T 29-03-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y880_RS06465 9b92e228938332ed199489e0219e0fe4 216 SUPERFAMILY SSF48498 76 199 2.77E-33 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 29-03-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.3E-46 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.7E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.7E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.7E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 Gene3D G3DSA:3.30.70.600 3 102 5.9E-36 T 29-03-2018 IPR027486 Ribosomal protein S10 domain Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.007 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 29-03-2018 IPR027486 Ribosomal protein S10 domain Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 SMART SM01403 7 101 9.7E-56 T 29-03-2018 IPR027486 Ribosomal protein S10 domain Y880_RS19580 84d268ba9f127038231991402a4d5e4b 103 SUPERFAMILY SSF54999 6 101 1.12E-36 T 29-03-2018 IPR027486 Ribosomal protein S10 domain Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 202 213 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 22 358 2.4E-152 T 29-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 SUPERFAMILY SSF46548 147 265 1.05E-18 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 Pfam PF08331 Domain of unknown function (DUF1730) 70 148 5.4E-25 T 29-03-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 Pfam PF13484 4Fe-4S double cluster binding domain 201 265 1.6E-19 T 29-03-2018 Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 Gene3D G3DSA:3.30.70.20 208 290 2.1E-10 T 29-03-2018 Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 15 324 50.2 T 29-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 Y880_RS23275 0ae02b8079368bc568313bec03d8e287 361 Gene3D G3DSA:3.30.70.20 120 207 4.8E-4 T 29-03-2018 Y880_RS20375 68fa3879119b1156c358e505e8e16484 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20375 68fa3879119b1156c358e505e8e16484 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 7.9E-141 T 29-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20375 68fa3879119b1156c358e505e8e16484 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 24.643 T 29-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20375 68fa3879119b1156c358e505e8e16484 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 4.4E-5 T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20375 68fa3879119b1156c358e505e8e16484 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20375 68fa3879119b1156c358e505e8e16484 360 Pfam PF00953 Glycosyl transferase family 4 99 284 9.7E-37 T 29-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 Gene3D G3DSA:3.40.50.300 65 201 2.1E-19 T 29-03-2018 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 Gene3D G3DSA:3.30.300.20 202 304 5.6E-42 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS00470 02d71d074e42a0534186864c05d50273 305 TIGRFAM TIGR00436 era: GTP-binding protein Era 15 285 4.5E-100 T 29-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 175 2.4E-31 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 SUPERFAMILY SSF54814 188 302 3.92E-42 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 SUPERFAMILY SSF52540 17 210 8.83E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00470 02d71d074e42a0534186864c05d50273 305 Pfam PF01926 50S ribosome-binding GTPase 17 131 1.5E-23 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 Hamap MF_00367 GTPase Era [era]. 12 302 36.228 T 29-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 Pfam PF07650 KH domain 215 290 9.8E-21 T 29-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 17 37 2.3E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 66 81 2.3E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS00470 02d71d074e42a0534186864c05d50273 305 Gene3D G3DSA:3.40.50.300 11 64 3.9E-13 T 29-03-2018 Y880_RS12485 c4c7a7b59385feba5d54b9cc6dd1caa0 260 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 221 2.6E-33 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12485 c4c7a7b59385feba5d54b9cc6dd1caa0 260 Gene3D G3DSA:3.40.1010.10 8 132 6.6E-29 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12485 c4c7a7b59385feba5d54b9cc6dd1caa0 260 SUPERFAMILY SSF53790 8 257 4.84E-54 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12485 c4c7a7b59385feba5d54b9cc6dd1caa0 260 Gene3D G3DSA:3.30.950.10 133 255 3.5E-52 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12485 c4c7a7b59385feba5d54b9cc6dd1caa0 260 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 11 257 9.4E-86 T 29-03-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 Y880_RS30030 9f7b1cb4b397a9f8185199974bf29f7f 363 SUPERFAMILY SSF53067 63 108 6.91E-25 T 29-03-2018 Y880_RS30030 9f7b1cb4b397a9f8185199974bf29f7f 363 SUPERFAMILY SSF53067 138 307 6.91E-25 T 29-03-2018 Y880_RS30030 9f7b1cb4b397a9f8185199974bf29f7f 363 SUPERFAMILY SSF53067 3 36 6.91E-25 T 29-03-2018 Y880_RS30030 9f7b1cb4b397a9f8185199974bf29f7f 363 Gene3D G3DSA:3.30.420.40 207 363 9.3E-26 T 29-03-2018 Y880_RS30030 9f7b1cb4b397a9f8185199974bf29f7f 363 Gene3D G3DSA:3.30.420.40 1 180 2.9E-57 T 29-03-2018 Y880_RS30030 9f7b1cb4b397a9f8185199974bf29f7f 363 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 2 363 40.839 T 29-03-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 Y880_RS30030 9f7b1cb4b397a9f8185199974bf29f7f 363 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 3 363 7.8E-169 T 29-03-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 Y880_RS29060 192e52afa762f6dcfb87dfa6cd1f2e67 134 Gene3D G3DSA:3.10.129.10 4 134 2.0E-26 T 29-03-2018 Y880_RS29060 192e52afa762f6dcfb87dfa6cd1f2e67 134 Pfam PF03061 Thioesterase superfamily 48 124 5.2E-16 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS29060 192e52afa762f6dcfb87dfa6cd1f2e67 134 SUPERFAMILY SSF54637 3 132 3.02E-29 T 29-03-2018 IPR029069 HotDog domain Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 Gene3D G3DSA:1.10.10.10 22 95 9.9E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 SMART SM00345 28 87 5.4E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 Gene3D G3DSA:3.90.1150.10 373 469 7.4E-7 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 87 6.3E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 SUPERFAMILY SSF46785 24 95 6.12E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 Gene3D G3DSA:3.40.640.10 126 372 1.0E-44 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 Pfam PF00155 Aminotransferase class I and II 141 444 2.1E-24 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS07685 e3f438430c4111af552a83e2e95a618f 477 SUPERFAMILY SSF53383 138 465 2.55E-67 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS15100 d16ba9260a3c6529cf5151beb1fb3802 113 Pfam PF07119 Protein of unknown function (DUF1375) 11 99 4.4E-21 T 29-03-2018 IPR010780 Protein of unknown function DUF1375 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 Pfam PF11791 Aconitate B N-terminal domain 4 156 2.9E-67 T 29-03-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.30.499.10 405 523 7.3E-11 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 SUPERFAMILY SSF74778 2 160 1.06E-68 T 29-03-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.40.1060.10 524 685 5.7E-28 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.20.19.10 162 363 1.9E-32 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 SUPERFAMILY SSF52016 161 372 3.57E-70 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.9E-96 T 29-03-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.30.499.10 686 868 2.2E-49 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 SUPERFAMILY SSF53732 379 858 4.71E-148 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 857 0.0 T 29-03-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 PIRSF PIRSF036687 1 862 0.0 T 29-03-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y880_RS06025 c0640becf0762a86a9a01a5bfcc8ce06 869 Pfam PF00330 Aconitase family (aconitate hydratase) 475 821 2.5E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS15335 a773e670abe051054bee1690f59ce8d3 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 4 379 71.118 T 29-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y880_RS15335 a773e670abe051054bee1690f59ce8d3 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 4.6E-192 T 29-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y880_RS15335 a773e670abe051054bee1690f59ce8d3 382 SUPERFAMILY SSF51679 3 349 1.06E-96 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS15335 a773e670abe051054bee1690f59ce8d3 382 Gene3D G3DSA:3.20.20.30 1 359 1.1E-88 T 29-03-2018 Y880_RS15335 a773e670abe051054bee1690f59ce8d3 382 Pfam PF00296 Luciferase-like monooxygenase 4 325 7.7E-85 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS01820 565e643b18a769b6be672bc6e2e3b762 185 SUPERFAMILY SSF55021 7 87 5.49E-9 T 29-03-2018 Y880_RS01820 565e643b18a769b6be672bc6e2e3b762 185 PIRSF PIRSF028103 7 182 4.1E-67 T 29-03-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 Y880_RS01820 565e643b18a769b6be672bc6e2e3b762 185 SUPERFAMILY SSF55021 95 181 7.67E-15 T 29-03-2018 Y880_RS01820 565e643b18a769b6be672bc6e2e3b762 185 Gene3D G3DSA:3.30.70.260 7 91 9.0E-4 T 29-03-2018 Y880_RS01820 565e643b18a769b6be672bc6e2e3b762 185 Gene3D G3DSA:3.30.70.260 97 184 4.7E-7 T 29-03-2018 Y880_RS01820 565e643b18a769b6be672bc6e2e3b762 185 Pfam PF13740 ACT domain 9 83 1.3E-14 T 29-03-2018 Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 Pfam PF00155 Aminotransferase class I and II 105 461 1.1E-36 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 3.6E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 Gene3D G3DSA:3.90.1150.10 372 467 2.1E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 Gene3D G3DSA:3.40.640.10 124 371 6.3E-48 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 SUPERFAMILY SSF46785 1 74 4.31E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 SUPERFAMILY SSF53383 86 463 1.65E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 SMART SM00345 7 66 7.5E-21 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS07320 0f0c6d5329035e8246ad84ee62a90577 474 Gene3D G3DSA:1.10.10.10 1 67 2.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 SUPERFAMILY SSF55347 124 237 1.44E-30 T 29-03-2018 Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 SUPERFAMILY SSF51735 1 153 1.28E-17 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 PIRSF PIRSF005227 1 267 5.0E-98 T 29-03-2018 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 Gene3D G3DSA:3.30.360.10 135 237 4.9E-36 T 29-03-2018 Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 Gene3D G3DSA:3.40.50.720 1 134 3.9E-13 T 29-03-2018 Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 8 119 2.4E-24 T 29-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 1 267 36.813 T 29-03-2018 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 Y880_RS15640 eddc79db8efdbedbefdb49582b82e450 267 Pfam PF01958 Domain of unknown function DUF108 168 255 8.8E-33 T 29-03-2018 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21 Y880_RS20080 5a26a56179be21107ea821788695ead6 75 Pfam PF04023 FeoA domain 2 65 2.7E-11 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Y880_RS20080 5a26a56179be21107ea821788695ead6 75 SUPERFAMILY SSF50037 3 71 2.98E-17 T 29-03-2018 IPR008988 Transcriptional repressor, C-terminal Y880_RS20080 5a26a56179be21107ea821788695ead6 75 SMART SM00899 1 73 5.1E-12 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Y880_RS20080 5a26a56179be21107ea821788695ead6 75 Gene3D G3DSA:2.30.30.90 2 75 2.1E-15 T 29-03-2018 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 Pfam PF00529 HlyD membrane-fusion protein of T1SS 35 399 8.1E-19 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 Gene3D G3DSA:1.20.1600.10 132 395 3.4E-18 T 29-03-2018 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 22 443 3.0E-142 T 29-03-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 Gene3D G3DSA:2.40.50.100 64 131 7.2E-12 T 29-03-2018 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 1.2E-65 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 387 1.2E-65 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 1.2E-65 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 75 95 1.2E-65 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 328 1.2E-65 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 364 1.2E-65 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 33 56 1.2E-65 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS15135 1bb3177c7f805d6ce5e57071124521ea 443 SUPERFAMILY SSF111369 266 346 4.71E-5 T 29-03-2018 Y880_RS04000 a724ba267f9e179015d97dca41b42bbe 313 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 25 310 2.3E-170 T 29-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Y880_RS04000 a724ba267f9e179015d97dca41b42bbe 313 Gene3D G3DSA:3.40.50.150 90 282 3.5E-22 T 29-03-2018 Y880_RS04000 a724ba267f9e179015d97dca41b42bbe 313 SUPERFAMILY SSF53335 4 287 2.21E-53 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS21570 27939688951642da19f21be931631dc3 507 SUPERFAMILY SSF51905 8 275 1.37E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21570 27939688951642da19f21be931631dc3 507 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 9 492 2.4E-266 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y880_RS21570 27939688951642da19f21be931631dc3 507 Gene3D G3DSA:3.50.50.60 1 444 1.8E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21570 27939688951642da19f21be931631dc3 507 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 5 494 54.162 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y880_RS21570 27939688951642da19f21be931631dc3 507 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 8 494 2.1E-232 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 SUPERFAMILY SSF47384 194 277 1.82E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 SMART SM00388 211 277 6.7E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 Gene3D G3DSA:1.10.287.130 201 273 4.2E-13 T 29-03-2018 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 SMART SM00387 321 426 3.7E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 SMART SM00304 156 210 5.6E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 SUPERFAMILY SSF55874 287 423 6.29E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 424 3.9E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 276 1.2E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 Gene3D G3DSA:3.30.565.10 284 426 7.5E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 367 1.0E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 381 1.0E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20190 6c32b9043b2e1e4c1a075890708d68fe 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 405 1.0E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS28205 23619acac30924bc9894e12129a2fdb8 256 SUPERFAMILY SSF53850 2 250 2.8E-64 T 29-03-2018 Y880_RS28205 23619acac30924bc9894e12129a2fdb8 256 Gene3D G3DSA:3.40.190.10 127 256 2.7E-17 T 29-03-2018 Y880_RS28205 23619acac30924bc9894e12129a2fdb8 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 248 2.7E-60 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS28205 23619acac30924bc9894e12129a2fdb8 256 SMART SM00062 31 250 4.6E-64 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS28205 23619acac30924bc9894e12129a2fdb8 256 Gene3D G3DSA:3.40.190.10 21 126 3.9E-32 T 29-03-2018 Y880_RS28205 23619acac30924bc9894e12129a2fdb8 256 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 Y880_RS05390 2efff5d72dacc27cee9e3839e6406a17 168 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 20 151 1.2E-41 T 29-03-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y880_RS05390 2efff5d72dacc27cee9e3839e6406a17 168 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 10 154 3.9E-46 T 29-03-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:2.40.50.140 618 697 8.7E-25 T 29-03-2018 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF55666 451 550 4.49E-29 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF00575 S1 RNA binding domain 620 691 3.8E-18 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF54211 293 489 1.92E-49 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:3.30.230.70 14 252 9.9E-55 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF50249 615 693 1.94E-22 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF54211 3 143 4.0E-50 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 694 30.536 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF00013 KH domain 558 613 2.6E-12 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:3.30.1370.10 561 617 1.5E-16 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SMART SM00316 621 691 8.9E-25 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 PIRSF PIRSF005499 1 700 4.9E-294 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF03725 3' exoribonuclease family, domain 2 460 529 9.2E-6 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF03725 3' exoribonuclease family, domain 2 146 210 4.4E-11 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SMART SM00322 553 618 2.4E-13 T 29-03-2018 IPR004087 K Homology domain GO:0003676 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:1.10.10.400 253 311 2.6E-15 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF55666 144 235 8.41E-27 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 321 8.2E-23 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:3.30.230.70 312 560 1.1E-58 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 1.2E-22 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF01138 3' exoribonuclease family, domain 1 15 143 3.7E-22 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF54791 556 641 7.01E-24 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 Y880_RS22180 95f3b645db0618eee5516e3ff1ae6931 701 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 692 0.0 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.8E-13 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 281 4.8E-13 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 4.8E-13 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 4.8E-13 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PIRSF PIRSF037149 1 815 0.0 T 29-03-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Gene3D G3DSA:3.50.50.60 122 252 3.6E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 SUPERFAMILY SSF51905 2 306 7.07E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 633 772 4.9E-27 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 798 1.1E-286 T 29-03-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 563 625 1.4E-14 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 SUPERFAMILY SSF55124 522 642 4.91E-25 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00397 Sirohaem Fe-binding site signature 637 655 1.8E-7 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00397 Sirohaem Fe-binding site signature 680 698 1.8E-7 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Gene3D G3DSA:3.50.50.60 253 314 9.7E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 488 538 3.6E-15 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 471 7.7E-14 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 8.9E-20 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.9E-20 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 8.9E-20 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 8.9E-20 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 8.9E-20 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 SUPERFAMILY SSF56014 634 800 3.27E-50 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 680 696 - T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Gene3D G3DSA:3.30.413.10 632 808 3.7E-37 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Gene3D G3DSA:3.90.480.10 380 627 1.0E-16 T 29-03-2018 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 283 3.2E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS05995 e4d4a416dc4c3b5e6b05f98ed4109dbb 816 Gene3D G3DSA:3.50.50.60 2 121 4.0E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19570 f04d50fc81601fa1adb5c543ea51b6a5 200 Gene3D G3DSA:3.40.1370.10 140 198 1.5E-10 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 Y880_RS19570 f04d50fc81601fa1adb5c543ea51b6a5 200 Gene3D G3DSA:3.40.1370.10 1 139 1.1E-47 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 Y880_RS19570 f04d50fc81601fa1adb5c543ea51b6a5 200 SUPERFAMILY SSF52166 6 199 1.44E-71 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 Y880_RS19570 f04d50fc81601fa1adb5c543ea51b6a5 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 200 34.093 T 29-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19570 f04d50fc81601fa1adb5c543ea51b6a5 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 197 1.1E-63 T 29-03-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 Y880_RS19570 f04d50fc81601fa1adb5c543ea51b6a5 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 11 197 8.3E-74 T 29-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS20665 774bf8485e5cbc489de53476ee622046 449 Gene3D G3DSA:3.30.2290.10 11 235 9.7E-60 T 29-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain Y880_RS20665 774bf8485e5cbc489de53476ee622046 449 SUPERFAMILY SSF111283 15 449 9.68E-128 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS20665 774bf8485e5cbc489de53476ee622046 449 Pfam PF01523 Putative modulator of DNA gyrase 35 326 7.9E-62 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 SUPERFAMILY SSF55347 178 487 3.6E-116 T 29-03-2018 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 SUPERFAMILY SSF51735 5 191 4.13E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 190 486 3.8E-119 T 29-03-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 488 82.424 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 178 184 - T 29-03-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 Gene3D G3DSA:3.40.50.720 7 189 3.6E-60 T 29-03-2018 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 PIRSF PIRSF000110 2 488 2.7E-172 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 486 2.4E-174 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 188 1.5E-54 T 29-03-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 329 355 6.5E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 238 254 6.5E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 144 157 6.5E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 220 237 6.5E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 168 196 6.5E-49 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y880_RS25860 c86dd2e5fe49465f357b6d53c86e23c1 488 Gene3D G3DSA:3.30.360.10 190 488 1.9E-131 T 29-03-2018 Y880_RS28630 2239967f08b2775c8a97ca07e3cfe807 230 Pfam PF01168 Alanine racemase, N-terminal domain 9 223 4.3E-34 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS28630 2239967f08b2775c8a97ca07e3cfe807 230 SUPERFAMILY SSF51419 1 221 1.57E-81 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS28630 2239967f08b2775c8a97ca07e3cfe807 230 Gene3D G3DSA:3.20.20.10 1 230 3.7E-74 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS28630 2239967f08b2775c8a97ca07e3cfe807 230 PIRSF PIRSF004848 1 228 5.5E-70 T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein Y880_RS28630 2239967f08b2775c8a97ca07e3cfe807 230 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein Y880_RS28630 2239967f08b2775c8a97ca07e3cfe807 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 223 2.1E-74 T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 Gene3D G3DSA:1.10.10.10 137 219 2.1E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 SMART SM00421 156 213 8.2E-28 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 SUPERFAMILY SSF52172 11 143 4.55E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 Gene3D G3DSA:3.40.50.2300 11 136 1.4E-37 T 29-03-2018 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 SUPERFAMILY SSF46894 146 218 1.84E-22 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 213 1.4E-21 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 1.1E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 1.1E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 1.1E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 SMART SM00448 12 125 3.8E-34 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 173 200 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17605 a2052e4cde379f185910616fa5c80dd8 219 Pfam PF00072 Response regulator receiver domain 15 126 8.1E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS08395 e0d5ea453407a70f37bb810588e92fb9 508 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 182 206 8.0E-7 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS08395 e0d5ea453407a70f37bb810588e92fb9 508 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 13 35 8.0E-7 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS08395 e0d5ea453407a70f37bb810588e92fb9 508 SUPERFAMILY SSF51905 13 396 5.72E-50 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08395 e0d5ea453407a70f37bb810588e92fb9 508 Gene3D G3DSA:3.50.50.60 12 175 1.9E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08395 e0d5ea453407a70f37bb810588e92fb9 508 Pfam PF00743 Flavin-binding monooxygenase-like 85 353 1.2E-12 T 29-03-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 Y880_RS08395 e0d5ea453407a70f37bb810588e92fb9 508 Pfam PF13450 NAD(P)-binding Rossmann-like domain 16 73 1.9E-7 T 29-03-2018 Y880_RS08395 e0d5ea453407a70f37bb810588e92fb9 508 Gene3D G3DSA:3.50.50.60 176 436 7.4E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS22330 41b6860ed1308437bb23762410af98b9 101 Pfam PF03658 RnfH family Ubiquitin 4 88 1.2E-30 T 29-03-2018 IPR005346 RnfH protein Y880_RS22330 41b6860ed1308437bb23762410af98b9 101 Gene3D G3DSA:3.10.20.280 1 89 1.2E-30 T 29-03-2018 IPR005346 RnfH protein Y880_RS22330 41b6860ed1308437bb23762410af98b9 101 Hamap MF_00460 Protein RnfH [rnfH]. 4 96 24.947 T 29-03-2018 IPR005346 RnfH protein Y880_RS22330 41b6860ed1308437bb23762410af98b9 101 SUPERFAMILY SSF54285 4 80 1.26E-21 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 SUPERFAMILY SSF55031 188 300 1.57E-30 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 SUPERFAMILY SSF53187 6 201 1.08E-87 T 29-03-2018 Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 SUPERFAMILY SSF53187 302 389 1.08E-87 T 29-03-2018 Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 Gene3D G3DSA:3.40.630.10 273 392 1.2E-22 T 29-03-2018 Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 Gene3D G3DSA:3.40.630.10 1 272 4.4E-71 T 29-03-2018 Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 Pfam PF07687 Peptidase dimerisation domain 192 286 3.9E-11 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 Pfam PF01546 Peptidase family M20/M25/M40 77 385 4.4E-34 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 19 374 8.7E-108 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 Y880_RS20005 b312c96d30fea15509ee9a681590ac03 406 PIRSF PIRSF005962 4 391 5.7E-121 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 Gene3D G3DSA:3.40.50.920 638 792 5.0E-17 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 SUPERFAMILY SSF52518 420 620 2.62E-7 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 SUPERFAMILY SSF52518 81 390 9.61E-21 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 Gene3D G3DSA:3.40.50.970 423 630 3.6E-25 T 29-03-2018 Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 434 604 2.6E-42 T 29-03-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 PIRSF PIRSF017245 26 801 2.3E-226 T 29-03-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 Gene3D G3DSA:3.40.50.970 79 407 9.7E-23 T 29-03-2018 Y880_RS16215 c2169a3e406a763b845c62ecc410d62a 801 Pfam PF09364 XFP N-terminal domain 66 307 3.6E-14 T 29-03-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF03448 MgtE intracellular N domain 64 165 1.5E-25 T 29-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 SMART SM00924 64 167 1.3E-35 T 29-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 TIGRFAM TIGR00400 mgtE: magnesium transporter 44 481 3.5E-85 T 29-03-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 SUPERFAMILY SSF161093 308 481 5.49E-48 T 29-03-2018 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Gene3D G3DSA:1.25.60.10 30 155 5.3E-19 T 29-03-2018 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 SUPERFAMILY SSF54631 167 305 6.6E-29 T 29-03-2018 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 SMART SM00116 238 286 6.4E-5 T 29-03-2018 IPR000644 CBS domain Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 SMART SM00116 174 227 2.7 T 29-03-2018 IPR000644 CBS domain Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Gene3D G3DSA:1.10.357.20 307 482 3.6E-38 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF01769 Divalent cation transporter 351 474 1.6E-26 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 SUPERFAMILY SSF158791 41 164 2.22E-28 T 29-03-2018 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF00571 CBS domain 233 285 8.9E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF00571 CBS domain 167 223 5.4E-4 T 29-03-2018 IPR000644 CBS domain Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Gene3D G3DSA:3.10.580.10 156 216 1.9E-7 T 29-03-2018 Y880_RS01350 d5faef30d783b38cd1652e60568cfe4a 482 Gene3D G3DSA:3.10.580.10 217 289 5.7E-11 T 29-03-2018 Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 Pfam PF00155 Aminotransferase class I and II 137 450 1.7E-28 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 69 3.3E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 SMART SM00345 10 69 4.6E-22 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 Gene3D G3DSA:3.90.1150.10 375 471 2.3E-21 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 SUPERFAMILY SSF46785 4 73 1.16E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 Gene3D G3DSA:3.40.640.10 124 374 2.0E-43 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 Gene3D G3DSA:1.10.10.10 2 71 8.4E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12455 3c206f778e0dccbe6a3bb60e66eb0233 479 SUPERFAMILY SSF53383 94 465 1.53E-89 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS00020 d438f07799406c2de166d5fe2beccb6a 190 Gene3D G3DSA:3.40.50.300 32 146 1.0E-27 T 29-03-2018 Y880_RS00020 d438f07799406c2de166d5fe2beccb6a 190 SUPERFAMILY SSF52540 33 146 3.29E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00020 d438f07799406c2de166d5fe2beccb6a 190 PIRSF PIRSF037290 1 189 1.7E-73 T 29-03-2018 IPR017166 Uncharacterised conserved protein UCP037290 Y880_RS15975 75a747554a9197712f3806743549aaa6 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS15975 75a747554a9197712f3806743549aaa6 497 Gene3D G3DSA:3.40.605.10 1 263 5.7E-85 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS15975 75a747554a9197712f3806743549aaa6 497 Pfam PF00171 Aldehyde dehydrogenase family 18 477 1.1E-135 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS15975 75a747554a9197712f3806743549aaa6 497 Gene3D G3DSA:3.40.309.10 264 459 6.8E-59 T 29-03-2018 Y880_RS15975 75a747554a9197712f3806743549aaa6 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 481 7.7E-279 T 29-03-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 Y880_RS15975 75a747554a9197712f3806743549aaa6 497 SUPERFAMILY SSF53720 3 483 1.3E-144 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 SUPERFAMILY SSF50346 101 175 2.55E-21 T 29-03-2018 IPR011033 PRC-barrel-like Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 SUPERFAMILY SSF50447 7 94 1.73E-25 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 Pfam PF05239 PRC-barrel domain 98 170 3.1E-7 T 29-03-2018 IPR027275 PRC-barrel domain Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 174 1.9E-53 T 29-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 Pfam PF01782 RimM N-terminal domain 10 92 2.1E-26 T 29-03-2018 IPR002676 RimM protein GO:0006364 Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 8 175 24.458 T 29-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 Gene3D G3DSA:2.30.30.240 97 170 1.4E-21 T 29-03-2018 Y880_RS16880 dc078be22bac475e3a26082c360e3942 175 Gene3D G3DSA:2.40.30.60 7 95 1.6E-26 T 29-03-2018 IPR002676 RimM protein GO:0006364 Y880_RS08445 27146ed34fc67e629c3c6910890bf1ed 399 SUPERFAMILY SSF46689 335 365 1.72E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08445 27146ed34fc67e629c3c6910890bf1ed 399 Gene3D G3DSA:1.10.10.60 302 367 2.1E-8 T 29-03-2018 Y880_RS08445 27146ed34fc67e629c3c6910890bf1ed 399 Pfam PF13556 PucR C-terminal helix-turn-helix domain 332 386 5.3E-14 T 29-03-2018 IPR025736 PucR C-terminal helix-turn-helix domain Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Pfam PF08264 Anticodon-binding domain of tRNA 715 834 1.4E-14 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 SUPERFAMILY SSF47323 675 872 9.53E-34 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 872 23.377 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 SUPERFAMILY SSF52374 426 681 9.21E-151 T 29-03-2018 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 SUPERFAMILY SSF52374 5 226 9.21E-151 T 29-03-2018 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 SUPERFAMILY SSF50677 226 424 1.26E-49 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 536 558 6.8E-51 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 6.8E-51 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 6.8E-51 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 6.8E-51 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 497 515 6.8E-51 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 6.8E-51 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 569 579 6.8E-51 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 872 0.0 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Pfam PF09334 tRNA synthetases class I (M) 39 171 5.6E-19 T 29-03-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Gene3D G3DSA:3.40.50.620 421 660 9.4E-65 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 631 665 3.9E-7 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 428 584 6.9E-8 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Gene3D G3DSA:1.10.730.10 661 809 2.8E-31 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Gene3D G3DSA:3.40.50.620 1 229 2.5E-74 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 413 8.4E-68 T 29-03-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 Y880_RS18185 603673aef9e28bb5d1f6bd93e7693421 873 Gene3D G3DSA:3.90.740.10 230 420 3.7E-50 T 29-03-2018 Y880_RS06385 5b9acaab5a2549e9ac836d56d2624f4b 80 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 1.2E-28 T 29-03-2018 IPR010696 Protein of unknown function DUF1272 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SUPERFAMILY SSF53850 39 256 5.91E-51 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00267 797 969 2.1E-71 T 29-03-2018 IPR000160 GGDEF domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 804 968 1.6E-44 T 29-03-2018 IPR000160 GGDEF domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SUPERFAMILY SSF141868 984 1231 1.7E-89 T 29-03-2018 IPR001633 EAL domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SUPERFAMILY SSF55073 813 970 4.79E-54 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.40.190.10 149 263 4.7E-9 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.30.70.270 802 972 5.0E-66 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Pfam PF00990 Diguanylate cyclase, GGDEF domain 808 965 6.7E-54 T 29-03-2018 IPR000160 GGDEF domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.30.450.20 546 681 1.5E-23 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.30.450.20 287 432 1.0E-27 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00062 38 258 9.9E-33 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00086 510 550 3.5 T 29-03-2018 IPR001610 PAC motif Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00086 635 675 83.0 T 29-03-2018 IPR001610 PAC motif Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00086 386 426 1.0E-5 T 29-03-2018 IPR001610 PAC motif Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00086 755 797 5.5E-5 T 29-03-2018 IPR001610 PAC motif Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.40.190.10 22 148 8.4E-23 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.20.20.450 973 1238 1.3E-101 T 29-03-2018 IPR001633 EAL domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 256 5.0E-37 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.40.50.10600 682 801 1.5E-27 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00091 683 749 6.9E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00091 312 380 0.0026 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00091 438 505 3.2E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00091 562 629 6.6E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SUPERFAMILY SSF55785 297 424 1.5E-20 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Pfam PF00563 EAL domain 985 1220 3.1E-77 T 29-03-2018 IPR001633 EAL domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Gene3D G3DSA:3.30.450.20 433 545 4.8E-18 T 29-03-2018 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SUPERFAMILY SSF55785 423 548 2.44E-19 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Pfam PF13426 PAS domain 572 674 2.0E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Pfam PF13426 PAS domain 694 795 7.3E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Pfam PF13426 PAS domain 448 548 4.0E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SUPERFAMILY SSF55785 688 795 5.24E-29 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 308 432 3.0E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 687 804 5.5E-20 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 436 556 5.7E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 560 682 3.3E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 Pfam PF08447 PAS fold 336 408 2.9E-10 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SUPERFAMILY SSF55785 547 673 2.97E-19 T 29-03-2018 IPR000014 PAS domain Y880_RS29585 485b7a8b80c1c16ca578c6785a8b17c1 1245 SMART SM00052 979 1225 1.3E-123 T 29-03-2018 IPR001633 EAL domain Y880_RS08905 599b0125a4dad21576172a8222e86792 193 Pfam PF07883 Cupin domain 126 184 9.3E-11 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS08905 599b0125a4dad21576172a8222e86792 193 SUPERFAMILY SSF51182 56 190 1.21E-20 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS08905 599b0125a4dad21576172a8222e86792 193 Gene3D G3DSA:1.10.260.40 6 88 1.1E-15 T 29-03-2018 Y880_RS08905 599b0125a4dad21576172a8222e86792 193 Pfam PF01381 Helix-turn-helix 19 69 2.6E-12 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS08905 599b0125a4dad21576172a8222e86792 193 SMART SM00530 16 71 1.7E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS08905 599b0125a4dad21576172a8222e86792 193 SUPERFAMILY SSF47413 12 74 8.58E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS08905 599b0125a4dad21576172a8222e86792 193 Gene3D G3DSA:2.60.120.10 97 192 7.6E-13 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS10980 3aaa83da5f7ab17846598c2964c84fe9 324 Gene3D G3DSA:3.40.50.1100 140 316 7.1E-58 T 29-03-2018 Y880_RS10980 3aaa83da5f7ab17846598c2964c84fe9 324 SUPERFAMILY SSF53686 6 312 2.23E-98 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS10980 3aaa83da5f7ab17846598c2964c84fe9 324 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 313 1.4E-136 T 29-03-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y880_RS10980 3aaa83da5f7ab17846598c2964c84fe9 324 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Y880_RS10980 3aaa83da5f7ab17846598c2964c84fe9 324 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 313 2.5E-131 T 29-03-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y880_RS10980 3aaa83da5f7ab17846598c2964c84fe9 324 Gene3D G3DSA:3.40.50.1100 42 139 1.9E-33 T 29-03-2018 Y880_RS10980 3aaa83da5f7ab17846598c2964c84fe9 324 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 302 1.5E-66 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS06055 3ed2517bbc28ef82a3dcdf2f49894713 240 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 5.6E-8 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y880_RS06055 3ed2517bbc28ef82a3dcdf2f49894713 240 Gene3D G3DSA:3.60.21.10 1 238 1.2E-20 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS06055 3ed2517bbc28ef82a3dcdf2f49894713 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 233 2.7E-113 T 29-03-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 Y880_RS06055 3ed2517bbc28ef82a3dcdf2f49894713 240 SUPERFAMILY SSF56300 1 224 2.71E-28 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS06055 3ed2517bbc28ef82a3dcdf2f49894713 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 127.996 T 29-03-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 507 2.0E-42 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 Gene3D G3DSA:1.20.120.30 23 186 2.4E-16 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain Y880_RS03155 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 16 41 8.5E-23 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 8.5E-23 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 8.5E-23 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 188 208 8.5E-23 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 SMART SM00304 267 317 72.0 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 SMART SM00304 212 264 2.0E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 Gene3D G3DSA:1.10.287.950 304 541 7.4E-53 T 29-03-2018 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 SUPERFAMILY SSF58104 232 540 1.22E-73 T 29-03-2018 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 SMART SM00283 279 540 6.4E-77 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS03155 abce77e181ade8d9569817c77496d928 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 12 184 1.9E-20 T 29-03-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y880_RS01935 f0c8272de8b98c8875239cf0bc787f1d 428 Pfam PF01266 FAD dependent oxidoreductase 30 381 2.2E-50 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS01935 f0c8272de8b98c8875239cf0bc787f1d 428 Gene3D G3DSA:3.30.9.10 102 345 1.9E-27 T 29-03-2018 Y880_RS01935 f0c8272de8b98c8875239cf0bc787f1d 428 SUPERFAMILY SSF51905 345 399 1.75E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS01935 f0c8272de8b98c8875239cf0bc787f1d 428 SUPERFAMILY SSF51905 29 253 1.75E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS01935 f0c8272de8b98c8875239cf0bc787f1d 428 Gene3D G3DSA:3.40.50.720 29 101 4.0E-4 T 29-03-2018 Y880_RS12815 4883180ec932cd69996ef994017c587d 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site Y880_RS12815 4883180ec932cd69996ef994017c587d 414 Gene3D G3DSA:3.40.47.10 6 260 5.0E-81 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12815 4883180ec932cd69996ef994017c587d 414 Gene3D G3DSA:3.40.47.10 263 414 5.9E-56 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12815 4883180ec932cd69996ef994017c587d 414 SMART SM00825 Beta-ketoacyl synthase 6 414 3.2E-16 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Y880_RS12815 4883180ec932cd69996ef994017c587d 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 1.1E-60 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Y880_RS12815 4883180ec932cd69996ef994017c587d 414 PIRSF PIRSF000447 1 414 6.5E-192 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Y880_RS12815 4883180ec932cd69996ef994017c587d 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 2.1E-41 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Y880_RS12815 4883180ec932cd69996ef994017c587d 414 SUPERFAMILY SSF53901 215 412 1.5E-75 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12815 4883180ec932cd69996ef994017c587d 414 SUPERFAMILY SSF53901 4 252 5.32E-78 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12815 4883180ec932cd69996ef994017c587d 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 410 4.5E-198 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Y880_RS03200 70919ce890f4d0689961d2326772737a 273 Gene3D G3DSA:3.40.190.10 142 216 5.9E-15 T 29-03-2018 Y880_RS03200 70919ce890f4d0689961d2326772737a 273 SUPERFAMILY SSF53850 8 261 2.06E-57 T 29-03-2018 Y880_RS03200 70919ce890f4d0689961d2326772737a 273 SMART SM00062 36 262 2.1E-44 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS03200 70919ce890f4d0689961d2326772737a 273 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 260 3.8E-48 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS03200 70919ce890f4d0689961d2326772737a 273 Gene3D G3DSA:3.40.190.10 26 141 3.0E-27 T 29-03-2018 Y880_RS15245 2261e3df34201f6109a9f5968da033bc 256 Gene3D G3DSA:3.90.226.10 1 256 1.9E-65 T 29-03-2018 Y880_RS15245 2261e3df34201f6109a9f5968da033bc 256 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 97 117 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Y880_RS15245 2261e3df34201f6109a9f5968da033bc 256 SUPERFAMILY SSF52096 3 252 1.53E-68 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS15245 2261e3df34201f6109a9f5968da033bc 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 246 9.3E-41 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS28650 5720834efb8e6b1a5a6b3ed0246f3e9d 134 Pfam PF05154 TM2 domain 8 54 5.1E-15 T 29-03-2018 IPR007829 TM2 domain Y880_RS28650 5720834efb8e6b1a5a6b3ed0246f3e9d 134 Pfam PF05154 TM2 domain 74 119 7.7E-15 T 29-03-2018 IPR007829 TM2 domain Y880_RS14965 8942f3b3644e732c532f9af79e3076cc 256 SMART SM00849 36 225 0.0088 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS14965 8942f3b3644e732c532f9af79e3076cc 256 Pfam PF12706 Beta-lactamase superfamily domain 64 225 8.6E-17 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS14965 8942f3b3644e732c532f9af79e3076cc 256 SUPERFAMILY SSF56281 1 256 1.17E-38 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS14965 8942f3b3644e732c532f9af79e3076cc 256 Gene3D G3DSA:3.60.15.10 1 256 1.7E-47 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS14965 8942f3b3644e732c532f9af79e3076cc 256 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 253 2.3E-114 T 29-03-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 Pfam PF04073 Aminoacyl-tRNA editing domain 257 375 4.6E-24 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 SUPERFAMILY SSF55826 218 388 4.71E-29 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 PIRSF PIRSF001535 1 571 5.8E-271 T 29-03-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 Gene3D G3DSA:3.40.50.800 459 571 3.8E-28 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 Pfam PF03129 Anticodon binding domain 473 567 1.2E-15 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 SUPERFAMILY SSF55681 405 476 4.06E-108 T 29-03-2018 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 SUPERFAMILY SSF55681 10 237 4.06E-108 T 29-03-2018 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 SUPERFAMILY SSF52954 461 570 7.85E-28 T 29-03-2018 IPR004154 Anticodon-binding Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 457 3.2E-52 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 570 42.517 T 29-03-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 Gene3D G3DSA:3.30.930.10 11 458 2.8E-102 T 29-03-2018 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.3E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.3E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.3E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.3E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y880_RS01590 c809821269141ee2670cff4158c45a9c 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 567 8.5E-255 T 29-03-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:1.10.150.20 429 493 1.7E-15 T 29-03-2018 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:3.30.300.20 201 278 2.1E-30 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 412 28.844 T 29-03-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:2.40.50.140 131 200 1.8E-18 T 29-03-2018 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF54814 202 280 1.63E-27 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:1.10.150.20 351 420 8.1E-14 T 29-03-2018 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 344 5.4E-123 T 29-03-2018 IPR010213 Transcription termination factor NusA GO:0003723 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF69705 1 128 7.72E-39 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF14520 Helix-hairpin-helix domain 434 488 9.9E-10 T 29-03-2018 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 367 415 1.4E-21 T 29-03-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 442 491 1.1E-21 T 29-03-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:3.30.1480.10 1 130 2.1E-45 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF00575 S1 RNA binding domain 135 197 7.6E-8 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 SMART SM00316 135 202 4.7E-12 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF54814 281 344 1.5E-14 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF50249 134 201 3.82E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF13184 NusA-like KH domain 232 299 4.1E-26 T 29-03-2018 IPR025249 KH domain, NusA-like GO:0003723 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF47794 357 418 2.2E-17 T 29-03-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF47794 432 492 1.38E-15 T 29-03-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF08529 NusA N-terminal domain 4 125 5.0E-38 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Y880_RS22210 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:3.30.300.20 280 350 5.5E-13 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS10350 e1b690c0ad3ab50f52300ce40bcaf9a4 342 SMART SM00342 245 327 9.2E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS10350 e1b690c0ad3ab50f52300ce40bcaf9a4 342 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 43 198 2.9E-15 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS10350 e1b690c0ad3ab50f52300ce40bcaf9a4 342 Gene3D G3DSA:1.10.10.10 228 268 4.7E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10350 e1b690c0ad3ab50f52300ce40bcaf9a4 342 Pfam PF12833 Helix-turn-helix domain 251 328 2.6E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS10350 e1b690c0ad3ab50f52300ce40bcaf9a4 342 SUPERFAMILY SSF46689 280 329 2.11E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS10350 e1b690c0ad3ab50f52300ce40bcaf9a4 342 Gene3D G3DSA:1.10.10.60 283 339 5.8E-13 T 29-03-2018 Y880_RS28735 29efb729e234e29ba48f005ead315332 343 SUPERFAMILY SSF52738 149 332 6.15E-46 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS28735 29efb729e234e29ba48f005ead315332 343 Pfam PF01339 CheB methylesterase 153 328 1.3E-39 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS28735 29efb729e234e29ba48f005ead315332 343 SUPERFAMILY SSF52172 4 61 3.56E-5 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS28735 29efb729e234e29ba48f005ead315332 343 Gene3D G3DSA:3.40.50.2300 1 100 6.6E-4 T 29-03-2018 Y880_RS28735 29efb729e234e29ba48f005ead315332 343 PIRSF PIRSF000876 4 337 3.2E-65 T 29-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS28735 29efb729e234e29ba48f005ead315332 343 Gene3D G3DSA:3.40.50.180 141 337 3.2E-48 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 4 184 41.126 T 29-03-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 Pfam PF14697 4Fe-4S dicluster domain 106 160 1.4E-17 T 29-03-2018 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 Gene3D G3DSA:3.30.70.20 26 120 4.9E-11 T 29-03-2018 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 PIRSF PIRSF005784 3 186 2.0E-84 T 29-03-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 SUPERFAMILY SSF54862 40 172 2.14E-28 T 29-03-2018 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 187 7.0E-87 T 29-03-2018 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 Gene3D G3DSA:3.30.70.20 121 185 5.8E-17 T 29-03-2018 Y880_RS15565 3af9ad26ae98cf80fc0a742aed7e4a82 188 Pfam PF04060 Putative Fe-S cluster 44 75 4.4E-14 T 29-03-2018 IPR007202 4Fe-4S domain GO:0051536 Y880_RS07795 184ec1b79205ffdd214f3bbf7d2d14e2 370 Pfam PF11017 Protein of unknown function (DUF2855) 42 356 1.6E-106 T 29-03-2018 IPR021276 Protein of unknown function DUF2855 Y880_RS16240 6a98d5b0f7cab16c1bef8114052e2dee 168 Pfam PF02464 Competence-damaged protein 10 161 4.4E-55 T 29-03-2018 IPR008136 CinA, C-terminal Y880_RS16240 6a98d5b0f7cab16c1bef8114052e2dee 168 Gene3D G3DSA:3.90.950.20 1 167 1.6E-55 T 29-03-2018 Y880_RS16240 6a98d5b0f7cab16c1bef8114052e2dee 168 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 15 161 2.4E-43 T 29-03-2018 IPR008136 CinA, C-terminal Y880_RS16240 6a98d5b0f7cab16c1bef8114052e2dee 168 SUPERFAMILY SSF142433 4 161 3.4E-52 T 29-03-2018 IPR008136 CinA, C-terminal Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Pfam PF00204 DNA gyrase B 217 384 1.4E-38 T 29-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 413 427 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 265 278 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 561 577 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 496 513 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 30 45 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 108 122 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 516 528 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 65 78 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR00418 DNA topoisomerase II family signature 478 494 7.4E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 191 212 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 148 163 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 310 325 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 134 148 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 361 386 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 447 468 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 536 558 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 337 360 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 468 480 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 237 260 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 293 309 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 583 597 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 25 38 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 502 518 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 PRINTS PR01098 Topoisomerase IV subunit B signature 173 190 1.3E-116 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Gene3D G3DSA:3.30.565.10 16 215 6.7E-67 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 ProSitePatterns PS00177 DNA topoisomerase II signature. 415 423 - T 29-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 SMART SM00433 33 623 1.4E-207 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Pfam PF01751 Toprim domain 412 521 7.5E-13 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 2 623 0.0 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 SUPERFAMILY SSF54211 216 381 6.83E-45 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 170 4.0E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 SUPERFAMILY SSF55874 4 214 1.69E-68 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 627 46.883 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Gene3D G3DSA:3.30.230.10 216 390 9.4E-41 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Gene3D G3DSA:3.40.50.670 394 626 8.4E-76 T 29-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 SUPERFAMILY SSF56719 387 620 7.59E-76 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 SMART SM00387 26 172 8.6E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS23365 bb892b926a4cdda2c050853e35d79aa9 629 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 619 6.2E-24 T 29-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 SUPERFAMILY SSF48498 96 221 7.12E-34 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 43 2.0E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 51 74 2.0E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 76 6.2E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 Gene3D G3DSA:1.10.260.40 52 80 1.2E-8 T 29-03-2018 Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 Gene3D G3DSA:1.10.10.60 6 51 7.8E-15 T 29-03-2018 Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 Gene3D G3DSA:1.10.357.10 81 222 1.6E-17 T 29-03-2018 Y880_RS27815 191cee0b8afe80f9c3493f0f89e0d40d 222 SUPERFAMILY SSF46689 17 91 1.03E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 SUPERFAMILY SSF52540 396 708 2.52E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 Gene3D G3DSA:1.10.10.10 745 799 5.6E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 Pfam PF01580 FtsK/SpoIIIE family 425 635 3.6E-63 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 Gene3D G3DSA:3.40.50.300 246 674 3.3E-54 T 29-03-2018 Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 Pfam PF09397 Ftsk gamma domain 745 805 1.8E-26 T 29-03-2018 IPR018541 FtsK gamma domain Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 27 200 2.3E-40 T 29-03-2018 IPR025199 DNA translocase FtsK, 4TM region Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 SMART SM00843 743 808 7.7E-38 T 29-03-2018 IPR018541 FtsK gamma domain Y880_RS10490 0112690ac8040889da7ec316b42f5e56 811 SUPERFAMILY SSF46785 743 806 1.29E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01280 89abb3e4590e02999903ff9e9012f08e 334 Pfam PF01212 Beta-eliminating lyase 5 283 4.0E-95 T 29-03-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Y880_RS01280 89abb3e4590e02999903ff9e9012f08e 334 Gene3D G3DSA:3.90.1150.10 247 334 6.5E-20 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS01280 89abb3e4590e02999903ff9e9012f08e 334 Gene3D G3DSA:3.40.640.10 1 246 1.9E-45 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS01280 89abb3e4590e02999903ff9e9012f08e 334 PIRSF PIRSF017617 1 334 6.7E-133 T 29-03-2018 IPR023603 Threonine aldolase Y880_RS01280 89abb3e4590e02999903ff9e9012f08e 334 SUPERFAMILY SSF53383 4 332 2.04E-115 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS13170 a4d26011565a3c2f7b9500561ae12942 467 SUPERFAMILY SSF48695 231 271 1.93E-5 T 29-03-2018 IPR011031 Multihaem cytochrome Y880_RS13170 a4d26011565a3c2f7b9500561ae12942 467 SUPERFAMILY SSF48695 373 383 1.93E-5 T 29-03-2018 IPR011031 Multihaem cytochrome Y880_RS13170 a4d26011565a3c2f7b9500561ae12942 467 Gene3D G3DSA:1.10.760.10 201 321 0.0025 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS13170 a4d26011565a3c2f7b9500561ae12942 467 SUPERFAMILY SSF46626 345 467 1.83E-23 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS13170 a4d26011565a3c2f7b9500561ae12942 467 Gene3D G3DSA:1.10.760.10 341 467 4.1E-25 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 Gene3D G3DSA:1.20.5.1040 5 57 1.4E-6 T 29-03-2018 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 Gene3D G3DSA:1.20.5.1040 144 191 0.16 T 29-03-2018 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 SMART SM00387 357 460 1.7E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 Pfam PF08521 Two-component sensor kinase N-terminal 19 167 1.6E-41 T 29-03-2018 IPR013727 Two-component sensor kinase, N-terminal Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 SUPERFAMILY SSF47384 227 309 1.0E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 SMART SM00388 244 309 1.5E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 Gene3D G3DSA:3.30.565.10 317 460 1.4E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 459 1.1E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 309 1.3E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 Gene3D G3DSA:1.10.287.130 234 305 8.9E-14 T 29-03-2018 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 419 3.0E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 3.0E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 3.0E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS00395 c3f56b29e54252bd837f87fef1ac91bd 460 SUPERFAMILY SSF55874 298 458 1.7E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 SUPERFAMILY SSF51735 1 195 8.32E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 423 2.3E-132 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 SMART SM00984 320 427 3.6E-46 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 PIRSF PIRSF000124 1 442 2.8E-143 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 6.3E-37 T 29-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 PIRSF PIRSF500134 1 445 4.6E-178 T 29-03-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 426 5.9E-29 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 SUPERFAMILY SSF52413 312 437 2.62E-36 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 Gene3D G3DSA:3.40.50.720 235 453 2.1E-69 T 29-03-2018 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 Gene3D G3DSA:3.40.50.720 1 202 4.7E-63 T 29-03-2018 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 SUPERFAMILY SSF48179 204 301 1.05E-31 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 Gene3D G3DSA:1.20.5.170 204 232 5.8E-14 T 29-03-2018 Y880_RS07270 6d55e5d4ad243bdeae688dc5066f2dc5 453 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 7.8E-61 T 29-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y880_RS14800 fd49ec2188104aa4ca03df1366e83c18 389 SUPERFAMILY SSF55073 227 388 2.04E-44 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS14800 fd49ec2188104aa4ca03df1366e83c18 389 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 219 388 9.9E-49 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14800 fd49ec2188104aa4ca03df1366e83c18 389 Gene3D G3DSA:3.30.70.270 215 389 2.6E-52 T 29-03-2018 Y880_RS14800 fd49ec2188104aa4ca03df1366e83c18 389 SMART SM00267 211 389 7.5E-57 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14800 fd49ec2188104aa4ca03df1366e83c18 389 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 386 5.3E-49 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02420 9fe874611a2e0bed5b3f28fa91af3062 382 SUPERFAMILY SSF50952 37 379 5.23E-44 T 29-03-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Y880_RS02420 9fe874611a2e0bed5b3f28fa91af3062 382 Pfam PF07995 Glucose / Sorbosone dehydrogenase 46 377 2.0E-137 T 29-03-2018 IPR012938 Glucose/Sorbosone dehydrogenase Y880_RS02420 9fe874611a2e0bed5b3f28fa91af3062 382 Gene3D G3DSA:2.120.10.30 22 282 4.0E-48 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS02420 9fe874611a2e0bed5b3f28fa91af3062 382 Gene3D G3DSA:2.120.10.30 283 374 2.7E-15 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 280 296 6.2E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 265 280 6.2E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 Gene3D G3DSA:1.10.10.60 253 303 1.1E-15 T 29-03-2018 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 Gene3D G3DSA:2.60.120.280 16 183 7.7E-21 T 29-03-2018 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 SUPERFAMILY SSF46689 249 298 7.62E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 198 242 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 SMART SM00342 213 296 5.6E-31 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 Pfam PF12833 Helix-turn-helix domain 219 298 1.4E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 SUPERFAMILY SSF46689 196 245 9.43E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 Gene3D G3DSA:1.10.10.60 195 252 2.6E-11 T 29-03-2018 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 250 292 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 Pfam PF02311 AraC-like ligand binding domain 17 173 3.7E-37 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS29520 bb4823abfa8c211bcda4d3202a98ac80 303 SUPERFAMILY SSF51182 27 81 9.49E-8 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS15115 d7f3b528b33864e17936b3c9ad88d206 323 Gene3D G3DSA:1.10.287.470 107 165 2.9E-12 T 29-03-2018 Y880_RS15115 d7f3b528b33864e17936b3c9ad88d206 323 Gene3D G3DSA:1.20.1600.10 170 265 6.5E-9 T 29-03-2018 Y880_RS15115 d7f3b528b33864e17936b3c9ad88d206 323 SUPERFAMILY SSF111369 107 165 5.75E-6 T 29-03-2018 Y880_RS15115 d7f3b528b33864e17936b3c9ad88d206 323 SUPERFAMILY SSF111369 174 253 7.32E-10 T 29-03-2018 Y880_RS15115 d7f3b528b33864e17936b3c9ad88d206 323 Gene3D G3DSA:2.40.50.100 38 98 2.5E-14 T 29-03-2018 Y880_RS15115 d7f3b528b33864e17936b3c9ad88d206 323 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 40 285 2.6E-18 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS15115 d7f3b528b33864e17936b3c9ad88d206 323 SUPERFAMILY SSF111369 40 94 4.97E-6 T 29-03-2018 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 3.8E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 SMART SM00421 150 207 1.1E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 SMART SM00448 4 119 2.2E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 SUPERFAMILY SSF52172 3 180 5.69E-26 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 Gene3D G3DSA:3.40.50.2300 1 124 5.2E-27 T 29-03-2018 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 Gene3D G3DSA:1.10.10.10 125 217 1.9E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 Pfam PF00072 Response regulator receiver domain 6 120 8.0E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 4.5E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 4.5E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16170 97f2eabbbc87fc447916a662505090eb 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 4.5E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 Gene3D G3DSA:2.40.50.140 921 1025 2.7E-7 T 29-03-2018 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 SUPERFAMILY SSF89550 11 192 1.24E-10 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 Pfam PF02811 PHP domain 13 128 6.7E-18 T 29-03-2018 IPR004013 PHP domain GO:0003824 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 Pfam PF14579 Helix-hairpin-helix motif 774 862 8.6E-22 T 29-03-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 12 975 9.4E-172 T 29-03-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 275 699 6.9E-148 T 29-03-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 Gene3D G3DSA:3.20.20.140 9 233 8.3E-40 T 29-03-2018 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 11 1031 14.007 T 29-03-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS00010 773b9ac668c53ff6d9fc6a0cdeb3c95a 1031 SMART SM00481 12 79 4.1E-10 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 Gene3D G3DSA:2.40.50.140 5 59 0.3 T 29-03-2018 Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 Gene3D G3DSA:1.10.10.10 219 277 5.3E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 Gene3D G3DSA:2.40.50.140 143 217 7.4E-5 T 29-03-2018 Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 PIRSF PIRSF012524 1 279 2.6E-104 T 29-03-2018 IPR014464 Conserved virulence factor B Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 SMART SM00316 146 208 0.87 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 SMART SM00316 71 133 6.9 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 Gene3D G3DSA:2.40.50.140 60 138 1.5E-9 T 29-03-2018 Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 Pfam PF13509 S1 domain 4 66 2.3E-22 T 29-03-2018 Y880_RS02455 e9e55b841622e6f87f6522b8b3ba58ed 279 Pfam PF13509 S1 domain 73 131 3.6E-9 T 29-03-2018 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 Pfam PF00158 Sigma-54 interaction domain 195 361 1.6E-69 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 SUPERFAMILY SSF52540 194 436 3.55E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 Gene3D G3DSA:3.30.450.40 9 178 7.9E-14 T 29-03-2018 IPR029016 GAF domain-like Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 SMART SM00382 215 358 1.5E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 Gene3D G3DSA:1.10.10.60 440 500 3.3E-16 T 29-03-2018 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 477 497 1.3E-8 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 460 477 1.3E-8 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 SUPERFAMILY SSF46689 409 496 8.24E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 SUPERFAMILY SSF55781 27 174 3.49E-8 T 29-03-2018 IPR029016 GAF domain-like Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 219 232 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 Pfam PF02954 Bacterial regulatory protein, Fis family 454 493 7.6E-14 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 281 296 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 Gene3D G3DSA:1.10.8.60 368 439 2.9E-17 T 29-03-2018 Y880_RS05375 e3db94f3eabfc01bedc386b704a1a4d7 503 Gene3D G3DSA:3.40.50.300 191 367 3.9E-31 T 29-03-2018 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.8E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.8E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.8E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 Gene3D G3DSA:3.40.190.10 252 298 0.003 T 29-03-2018 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 Gene3D G3DSA:3.40.190.10 180 251 2.5E-16 T 29-03-2018 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 Pfam PF03466 LysR substrate binding domain 93 292 2.2E-24 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 Gene3D G3DSA:1.10.10.10 1 86 6.5E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 6.4E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 Gene3D G3DSA:3.40.190.10 96 179 3.5E-9 T 29-03-2018 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 SUPERFAMILY SSF53850 88 291 7.45E-39 T 29-03-2018 Y880_RS23025 4b393f058881d56cd6e9fde115c9819f 298 SUPERFAMILY SSF46785 2 86 7.48E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 Gene3D G3DSA:1.10.10.60 201 247 1.6E-11 T 29-03-2018 Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 Gene3D G3DSA:1.10.10.60 131 193 5.8E-7 T 29-03-2018 Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 Pfam PF12680 SnoaL-like domain 6 100 3.6E-10 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 Pfam PF12833 Helix-turn-helix domain 162 242 7.5E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 193 236 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 Gene3D G3DSA:3.10.450.50 1 109 3.6E-16 T 29-03-2018 Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 SUPERFAMILY SSF46689 208 242 6.72E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 SUPERFAMILY SSF54427 2 107 1.26E-16 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS15230 66901baaee591e78cd4b042064a8cd26 247 SMART SM00342 156 240 1.3E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS29875 b0e333c8e47add9ec2a09e8eb822d847 164 Pfam PF16460 Phage tail tube, TTP, lambda-like 25 161 8.0E-84 T 29-03-2018 IPR032495 Phage tail tube protein, lambda-like Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 Gene3D G3DSA:3.20.20.70 1 331 2.0E-105 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 7.1E-217 T 29-03-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 6.1E-92 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 PIRSF PIRSF001359 1 329 1.4E-83 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 8.2E-98 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y880_RS29475 4a1888f4f59c5cebc243ab1d0d538d93 354 SUPERFAMILY SSF51569 3 328 7.77E-107 T 29-03-2018 Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 Pfam PF00106 short chain dehydrogenase 4 192 3.4E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.3E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.3E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.3E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 Gene3D G3DSA:3.40.50.720 2 262 5.5E-57 T 29-03-2018 Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 186 6.6E-4 T 29-03-2018 Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 PIRSF PIRSF000126 1 260 1.9E-69 T 29-03-2018 Y880_RS29990 059ec4becca54abbe45a73345091d0a0 266 SUPERFAMILY SSF51735 3 256 5.8E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS01105 0350184aaaad2dc4f42f93c3ffa2af56 310 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 65 76 1.3E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y880_RS01105 0350184aaaad2dc4f42f93c3ffa2af56 310 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 142 155 1.3E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y880_RS01105 0350184aaaad2dc4f42f93c3ffa2af56 310 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 115 132 1.3E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y880_RS01105 0350184aaaad2dc4f42f93c3ffa2af56 310 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 260 9.1E-89 T 29-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Y880_RS01105 0350184aaaad2dc4f42f93c3ffa2af56 310 Gene3D G3DSA:3.40.710.10 16 299 7.2E-46 T 29-03-2018 Y880_RS01105 0350184aaaad2dc4f42f93c3ffa2af56 310 SUPERFAMILY SSF56601 8 276 2.88E-60 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS12275 373c35716d8a1834d2f65212ffb53be2 182 Gene3D G3DSA:3.90.1140.10 3 181 9.5E-33 T 29-03-2018 Y880_RS12275 373c35716d8a1834d2f65212ffb53be2 182 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 7 171 4.2E-30 T 29-03-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Y880_RS12275 373c35716d8a1834d2f65212ffb53be2 182 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 6 171 19.337 T 29-03-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Y880_RS12275 373c35716d8a1834d2f65212ffb53be2 182 Pfam PF13563 2'-5' RNA ligase superfamily 15 155 1.4E-12 T 29-03-2018 Y880_RS12275 373c35716d8a1834d2f65212ffb53be2 182 SUPERFAMILY SSF55144 7 173 9.24E-41 T 29-03-2018 IPR009097 Cyclic phosphodiesterase Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 7.7E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 7.7E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 7.7E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 SUPERFAMILY SSF46785 4 115 8.56E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 SUPERFAMILY SSF53850 94 301 2.17E-40 T 29-03-2018 Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 Gene3D G3DSA:1.10.10.10 2 90 4.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.8E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 Gene3D G3DSA:3.40.190.10 92 179 9.4E-23 T 29-03-2018 Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 Gene3D G3DSA:3.40.190.10 180 271 1.6E-19 T 29-03-2018 Y880_RS27685 5c8dde2b62b6fe521955efe33cd15971 306 Pfam PF03466 LysR substrate binding domain 93 298 8.0E-43 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 Pfam PF02743 Cache domain 37 260 3.2E-31 T 29-03-2018 IPR033479 Double Cache domain 1 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 Gene3D G3DSA:1.10.287.950 402 629 9.7E-51 T 29-03-2018 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 Gene3D G3DSA:1.10.287.950 296 401 7.4E-8 T 29-03-2018 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 SUPERFAMILY SSF58104 320 629 4.84E-76 T 29-03-2018 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 SMART SM00283 367 628 7.2E-96 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 Pfam PF00672 HAMP domain 299 348 1.1E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 Gene3D G3DSA:3.30.450.20 162 277 2.0E-28 T 29-03-2018 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 Gene3D G3DSA:3.30.450.20 29 161 1.8E-20 T 29-03-2018 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 SMART SM00304 298 352 7.7E-16 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 SMART SM00304 387 447 18.0 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 SUPERFAMILY SSF103190 84 184 3.92E-10 T 29-03-2018 IPR029151 Periplasmic sensor domain-like Y880_RS19825 2b2302ec64ff9e5927a474aeb10f190d 629 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 411 594 1.0E-44 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS24345 c73a94fe37e0036f271c8ba150568efd 257 SUPERFAMILY SSF52540 8 252 8.23E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24345 c73a94fe37e0036f271c8ba150568efd 257 SMART SM00382 32 230 1.6E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24345 c73a94fe37e0036f271c8ba150568efd 257 Pfam PF00005 ABC transporter 23 182 2.1E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS24345 c73a94fe37e0036f271c8ba150568efd 257 PIRSF PIRSF039085 4 257 3.7E-116 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y880_RS24345 c73a94fe37e0036f271c8ba150568efd 257 Gene3D G3DSA:3.40.50.300 4 257 2.1E-72 T 29-03-2018 Y880_RS24345 c73a94fe37e0036f271c8ba150568efd 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS19410 7bad598d98e2fb987bbd59da9d08a04a 101 Pfam PF01817 Chorismate mutase type II 14 90 3.5E-14 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS19410 7bad598d98e2fb987bbd59da9d08a04a 101 SUPERFAMILY SSF48600 1 94 5.36E-25 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS19410 7bad598d98e2fb987bbd59da9d08a04a 101 SMART SM00830 14 93 4.0E-23 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS19410 7bad598d98e2fb987bbd59da9d08a04a 101 PIRSF PIRSF029775 1 101 7.3E-41 T 29-03-2018 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS19410 7bad598d98e2fb987bbd59da9d08a04a 101 Gene3D G3DSA:1.20.59.10 1 98 1.3E-22 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS19410 7bad598d98e2fb987bbd59da9d08a04a 101 TIGRFAM TIGR01803 CM-like: chorismate mutase related enzymes 10 90 1.6E-39 T 29-03-2018 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y880_RS18370 60721cfc527b5a3edc9219e57027090c 153 Pfam PF00583 Acetyltransferase (GNAT) family 32 135 1.2E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS18370 60721cfc527b5a3edc9219e57027090c 153 Gene3D G3DSA:3.40.630.30 1 150 3.1E-25 T 29-03-2018 Y880_RS18370 60721cfc527b5a3edc9219e57027090c 153 SUPERFAMILY SSF55729 1 146 1.51E-37 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 Pfam PF14698 Argininosuccinate lyase C-terminal 369 437 7.6E-26 T 29-03-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 Gene3D G3DSA:1.10.40.30 381 438 4.3E-27 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 Gene3D G3DSA:1.20.200.10 113 380 1.4E-97 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 Gene3D G3DSA:1.10.275.10 8 112 3.0E-40 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 Hamap MF_00006 Argininosuccinate lyase [argH]. 8 459 44.01 T 29-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 SUPERFAMILY SSF48557 10 461 3.93E-156 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 Pfam PF00206 Lyase 12 306 1.5E-77 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 TIGRFAM TIGR00838 argH: argininosuccinate lyase 10 458 4.2E-193 T 29-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00149 Fumarate lyase superfamily signature 281 297 5.1E-31 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00149 Fumarate lyase superfamily signature 237 264 5.1E-31 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00149 Fumarate lyase superfamily signature 108 126 5.1E-31 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00149 Fumarate lyase superfamily signature 153 171 5.1E-31 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00145 Argininosuccinate lyase family signature 107 129 1.3E-69 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00145 Argininosuccinate lyase family signature 316 335 1.3E-69 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00145 Argininosuccinate lyase family signature 237 261 1.3E-69 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00145 Argininosuccinate lyase family signature 148 168 1.3E-69 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00145 Argininosuccinate lyase family signature 281 297 1.3E-69 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 PRINTS PR00145 Argininosuccinate lyase family signature 199 215 1.3E-69 T 29-03-2018 Y880_RS24925 17676e48e6e415c1a54420da0b4f3344 464 ProSitePatterns PS00163 Fumarate lyases signature. 281 290 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y880_RS11275 7f8214956c7d178ed4b6c2ed56c68965 156 Hamap MF_00706 Ecotin [eco]. 1 156 40.185 T 29-03-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria Y880_RS11275 7f8214956c7d178ed4b6c2ed56c68965 156 Gene3D G3DSA:4.10.1230.10 100 153 2.5E-28 T 29-03-2018 IPR027438 Ecotin, C-terminal Y880_RS11275 7f8214956c7d178ed4b6c2ed56c68965 156 PIRSF PIRSF006865 1 156 8.5E-66 T 29-03-2018 IPR005658 Proteinase inhibitor I11, ecotin Y880_RS11275 7f8214956c7d178ed4b6c2ed56c68965 156 SUPERFAMILY SSF49772 23 154 4.97E-55 T 29-03-2018 IPR023189 Proteinase inhibitor I11, ecotin domain Y880_RS11275 7f8214956c7d178ed4b6c2ed56c68965 156 Gene3D G3DSA:2.60.40.550 22 94 1.9E-32 T 29-03-2018 Y880_RS11275 7f8214956c7d178ed4b6c2ed56c68965 156 Pfam PF03974 Ecotin 26 146 1.0E-51 T 29-03-2018 IPR023189 Proteinase inhibitor I11, ecotin domain Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:1.20.1640.10 280 502 1.2E-47 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.70.1430 40 142 7.4E-26 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82866 816 1015 3.79E-44 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82866 290 490 2.22E-48 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 556 653 3.4E-16 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 40 133 6.02E-24 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.70.1430 558 657 3.9E-14 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.0E-78 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82714 708 791 3.14E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 793 836 6.28E-10 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 666 706 6.28E-10 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:1.20.1640.10 798 1016 1.4E-35 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82714 183 266 3.27E-14 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.2090.10 707 795 1.7E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.2090.10 181 269 2.7E-14 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 136 182 1.07E-24 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 268 324 1.07E-24 T 29-03-2018 Y880_RS09990 e21399d570b5bde3f4a55ed53515ffc6 1043 Pfam PF00873 AcrB/AcrD/AcrF family 6 1013 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.9E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.9E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.9E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 1.9E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 Pfam PF00106 short chain dehydrogenase 6 183 1.9E-51 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 Gene3D G3DSA:3.40.50.720 3 247 1.6E-58 T 29-03-2018 Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 2.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 2.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03770 37c3c94ca5419c6126394c9236c87b20 268 SUPERFAMILY SSF51735 5 232 3.47E-61 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS20570 525c346d72a8e5b47a4f6e03a350fbe1 215 Pfam PF05494 MlaC protein 33 195 4.5E-43 T 29-03-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Y880_RS20570 525c346d72a8e5b47a4f6e03a350fbe1 215 Gene3D G3DSA:3.10.450.50 76 169 1.5E-23 T 29-03-2018 Y880_RS20570 525c346d72a8e5b47a4f6e03a350fbe1 215 Gene3D G3DSA:3.10.450.50 25 75 0.003 T 29-03-2018 Y880_RS20570 525c346d72a8e5b47a4f6e03a350fbe1 215 PIRSF PIRSF004649 1 210 1.9E-59 T 29-03-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 Gene3D G3DSA:3.65.10.10 532 744 2.9E-52 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 325 738 2.6E-126 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 SUPERFAMILY SSF51735 16 183 3.83E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 Gene3D G3DSA:1.10.3660.10 195 310 2.1E-33 T 29-03-2018 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 Pfam PF02153 Prephenate dehydrogenase 29 285 3.9E-73 T 29-03-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 321 740 33.596 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 ProSitePatterns PS00104 EPSP synthase signature 1. 400 414 - T 29-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 SUPERFAMILY SSF48179 189 295 9.98E-35 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 SUPERFAMILY SSF55205 316 738 3.11E-133 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 ProSitePatterns PS00885 EPSP synthase signature 2. 652 670 - T 29-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 Gene3D G3DSA:3.40.50.720 11 186 9.4E-29 T 29-03-2018 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 318 731 2.8E-119 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y880_RS13830 36bc6dddcd7c45cd628aa382c59a9960 746 Gene3D G3DSA:3.65.10.10 332 531 6.0E-54 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y880_RS02595 41fea71757505275c32b71c3e4cd4b76 217 SUPERFAMILY SSF56784 2 204 2.38E-29 T 29-03-2018 IPR023214 HAD-like domain Y880_RS02595 41fea71757505275c32b71c3e4cd4b76 217 Gene3D G3DSA:1.20.1440.100 16 80 4.2E-24 T 29-03-2018 Y880_RS02595 41fea71757505275c32b71c3e4cd4b76 217 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 1.4E-35 T 29-03-2018 Y880_RS02595 41fea71757505275c32b71c3e4cd4b76 217 Gene3D G3DSA:3.40.50.1000 81 208 8.7E-11 T 29-03-2018 IPR023214 HAD-like domain Y880_RS02595 41fea71757505275c32b71c3e4cd4b76 217 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 201 5.8E-51 T 29-03-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y880_RS02595 41fea71757505275c32b71c3e4cd4b76 217 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 190 3.4E-41 T 29-03-2018 Y880_RS22930 f5d5139c4d542321646ed7bac512115a 204 Pfam PF01292 Prokaryotic cytochrome b561 6 190 2.9E-23 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y880_RS22930 f5d5139c4d542321646ed7bac512115a 204 Gene3D G3DSA:1.20.950.20 2 203 2.1E-33 T 29-03-2018 Y880_RS22930 f5d5139c4d542321646ed7bac512115a 204 SUPERFAMILY SSF81342 5 197 1.1E-33 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y880_RS22930 f5d5139c4d542321646ed7bac512115a 204 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 159 181 3.4E-5 T 29-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 Y880_RS22930 f5d5139c4d542321646ed7bac512115a 204 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 8 31 3.4E-5 T 29-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 Y880_RS26125 810dac3a7fe294d9c8fd1163761250c9 292 Gene3D G3DSA:3.60.10.10 22 272 2.0E-27 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS26125 810dac3a7fe294d9c8fd1163761250c9 292 SUPERFAMILY SSF56219 28 277 1.23E-33 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS26125 810dac3a7fe294d9c8fd1163761250c9 292 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 38 264 1.6E-11 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 SMART SM00895 75 212 3.0E-22 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 SMART SM00345 8 65 3.3E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 Pfam PF07729 FCD domain 77 211 1.0E-17 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 SUPERFAMILY SSF46785 6 94 5.16E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 SUPERFAMILY SSF48008 71 214 1.7E-17 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 Gene3D G3DSA:1.10.10.10 2 73 5.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 63 6.3E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS23045 512adfe37de5c913e876c2b51b63b3c9 237 Gene3D G3DSA:1.20.120.530 74 219 2.0E-27 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS03835 3c76069d459570395637be96027d13a2 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS03835 3c76069d459570395637be96027d13a2 277 Pfam PF00106 short chain dehydrogenase 5 188 4.4E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 6.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 6.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 6.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 Gene3D G3DSA:3.40.50.720 4 277 6.2E-67 T 29-03-2018 Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.7E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.7E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.7E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.7E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.7E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03835 3c76069d459570395637be96027d13a2 277 SUPERFAMILY SSF51735 5 245 2.0E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS00905 8f3578c0ddc73e01fcffadca7d6525b8 213 SMART SM00849 18 195 3.2E-34 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00905 8f3578c0ddc73e01fcffadca7d6525b8 213 Pfam PF00753 Metallo-beta-lactamase superfamily 15 195 2.7E-29 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00905 8f3578c0ddc73e01fcffadca7d6525b8 213 Gene3D G3DSA:3.60.15.10 7 213 2.0E-38 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00905 8f3578c0ddc73e01fcffadca7d6525b8 213 SUPERFAMILY SSF56281 8 212 1.82E-51 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS21905 2a152d963755db5a504c9a680f1d858d 335 Pfam PF13343 Bacterial extracellular solute-binding protein 81 313 6.4E-28 T 29-03-2018 Y880_RS21905 2a152d963755db5a504c9a680f1d858d 335 PIRSF PIRSF002825 12 334 4.9E-83 T 29-03-2018 IPR026045 Ferric binding protein Y880_RS21905 2a152d963755db5a504c9a680f1d858d 335 Gene3D G3DSA:3.40.190.10 165 310 3.6E-20 T 29-03-2018 Y880_RS21905 2a152d963755db5a504c9a680f1d858d 335 Gene3D G3DSA:3.40.190.10 26 162 1.3E-18 T 29-03-2018 Y880_RS21905 2a152d963755db5a504c9a680f1d858d 335 SUPERFAMILY SSF53850 27 323 1.2E-72 T 29-03-2018 Y880_RS21830 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 SUPERFAMILY SSF47413 10 91 8.3E-23 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS21830 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 Pfam PF01381 Helix-turn-helix 22 69 6.0E-6 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS21830 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 6 82 2.9E-32 T 29-03-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 Y880_RS21830 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 Gene3D G3DSA:1.10.260.40 1 97 3.0E-11 T 29-03-2018 Y880_RS21830 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 SMART SM00530 14 70 4.8E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS05735 b7a8c7f0eea29799bf0c6ea43daffd87 266 Pfam PF01841 Transglutaminase-like superfamily 111 212 1.2E-21 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS05735 b7a8c7f0eea29799bf0c6ea43daffd87 266 Gene3D G3DSA:3.90.260.10 135 244 2.2E-6 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS05735 b7a8c7f0eea29799bf0c6ea43daffd87 266 SMART SM00460 153 215 8.0E-16 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS05735 b7a8c7f0eea29799bf0c6ea43daffd87 266 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 7.5E-20 T 29-03-2018 IPR013589 Bacterial transglutaminase-like, N-terminal Y880_RS05735 b7a8c7f0eea29799bf0c6ea43daffd87 266 SUPERFAMILY SSF54001 51 258 1.08E-47 T 29-03-2018 Y880_RS15610 2e7a6ff5238559b92765fb3d42d1c0bf 144 Pfam PF01042 Endoribonuclease L-PSP 17 132 2.4E-14 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS15610 2e7a6ff5238559b92765fb3d42d1c0bf 144 Gene3D G3DSA:3.30.1330.40 1 144 2.5E-22 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS15610 2e7a6ff5238559b92765fb3d42d1c0bf 144 SUPERFAMILY SSF55298 16 134 1.32E-22 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS20735 270580b789722b01220fc646a97333d6 128 SUPERFAMILY SSF69118 5 119 2.09E-39 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS20735 270580b789722b01220fc646a97333d6 128 Gene3D G3DSA:1.20.1290.10 7 128 3.1E-38 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS20735 270580b789722b01220fc646a97333d6 128 Pfam PF02627 Carboxymuconolactone decarboxylase family 35 117 1.9E-26 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS09260 1d059b608c7cb02db9c30e3c500e3543 383 SUPERFAMILY SSF51395 4 376 1.22E-104 T 29-03-2018 Y880_RS09260 1d059b608c7cb02db9c30e3c500e3543 383 PIRSF PIRSF000138 1 380 3.2E-128 T 29-03-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Y880_RS09260 1d059b608c7cb02db9c30e3c500e3543 383 Pfam PF01070 FMN-dependent dehydrogenase 14 376 5.3E-136 T 29-03-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Y880_RS09260 1d059b608c7cb02db9c30e3c500e3543 383 Gene3D G3DSA:3.20.20.70 3 377 4.6E-103 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS09260 1d059b608c7cb02db9c30e3c500e3543 383 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 274 280 - T 29-03-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Y880_RS19945 b92005ffd37e4d8d98b3f785081d6789 375 SUPERFAMILY SSF55073 216 366 4.47E-46 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS19945 b92005ffd37e4d8d98b3f785081d6789 375 Pfam PF00990 Diguanylate cyclase, GGDEF domain 212 365 2.9E-43 T 29-03-2018 IPR000160 GGDEF domain Y880_RS19945 b92005ffd37e4d8d98b3f785081d6789 375 SMART SM00267 200 369 1.4E-58 T 29-03-2018 IPR000160 GGDEF domain Y880_RS19945 b92005ffd37e4d8d98b3f785081d6789 375 Gene3D G3DSA:3.30.70.270 205 373 9.2E-53 T 29-03-2018 Y880_RS19945 b92005ffd37e4d8d98b3f785081d6789 375 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 207 367 5.5E-42 T 29-03-2018 IPR000160 GGDEF domain Y880_RS12645 1526b762ab65b9a24ce9e3eaf271956c 392 Gene3D G3DSA:1.20.1250.20 194 385 7.0E-18 T 29-03-2018 Y880_RS12645 1526b762ab65b9a24ce9e3eaf271956c 392 Gene3D G3DSA:1.20.1250.20 2 192 7.4E-21 T 29-03-2018 Y880_RS12645 1526b762ab65b9a24ce9e3eaf271956c 392 Pfam PF07690 Major Facilitator Superfamily 9 340 5.0E-33 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS12645 1526b762ab65b9a24ce9e3eaf271956c 392 SUPERFAMILY SSF103473 4 379 2.88E-52 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 Gene3D G3DSA:2.102.10.10 43 153 3.6E-20 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 196 385 4.2E-18 T 29-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 SUPERFAMILY SSF50022 11 164 9.56E-45 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 9 438 5.6E-262 T 29-03-2018 IPR017639 Benzoate 1,2-dioxygenase, large subunit Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 6.1E-46 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 60 75 6.1E-46 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 30 55 6.1E-46 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 102 122 6.1E-46 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 148 174 6.1E-46 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 81 101 6.1E-46 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 SUPERFAMILY SSF55961 164 445 1.33E-70 T 29-03-2018 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 Pfam PF00355 Rieske [2Fe-2S] domain 45 129 2.0E-20 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 Gene3D G3DSA:3.90.380.10 154 454 6.3E-69 T 29-03-2018 Y880_RS09940 e0349d054c4a251e94512d34dae785f1 455 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 88 111 - T 29-03-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 Y880_RS13785 d308e99becac0621e3ae3eb5b27df862 348 Gene3D G3DSA:3.40.50.2000 4 163 6.0E-6 T 29-03-2018 Y880_RS13785 d308e99becac0621e3ae3eb5b27df862 348 SUPERFAMILY SSF53756 52 335 1.47E-29 T 29-03-2018 Y880_RS13785 d308e99becac0621e3ae3eb5b27df862 348 Gene3D G3DSA:3.40.50.2000 164 318 2.8E-19 T 29-03-2018 Y880_RS13785 d308e99becac0621e3ae3eb5b27df862 348 Pfam PF13692 Glycosyl transferases group 1 196 306 2.8E-9 T 29-03-2018 Y880_RS20890 2047125ae861863686b399d26b42f594 271 SMART SM00671 148 183 1.5E-7 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 SMART SM00671 76 111 6.6E-5 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 SMART SM00671 114 147 9.3E-7 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 SMART SM00671 40 75 1.2E-7 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 SUPERFAMILY SSF81901 15 251 1.92E-44 T 29-03-2018 Y880_RS20890 2047125ae861863686b399d26b42f594 271 Pfam PF08238 Sel1 repeat 236 250 0.72 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 Pfam PF08238 Sel1 repeat 41 75 1.7E-7 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 Pfam PF08238 Sel1 repeat 148 183 5.5E-6 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 Pfam PF08238 Sel1 repeat 202 215 120.0 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 Pfam PF08238 Sel1 repeat 77 110 0.051 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 Pfam PF08238 Sel1 repeat 114 147 6.3E-8 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS20890 2047125ae861863686b399d26b42f594 271 Gene3D G3DSA:2.60.40.1180 23 109 8.3E-19 T 29-03-2018 Y880_RS20890 2047125ae861863686b399d26b42f594 271 Gene3D G3DSA:2.60.40.1180 110 174 9.6E-19 T 29-03-2018 Y880_RS20890 2047125ae861863686b399d26b42f594 271 Gene3D G3DSA:1.25.40.10 175 260 5.1E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS09445 832da3aa8987e3513a06271201d24ca2 226 Gene3D G3DSA:3.40.50.850 7 215 1.0E-37 T 29-03-2018 Y880_RS09445 832da3aa8987e3513a06271201d24ca2 226 SUPERFAMILY SSF52499 12 209 4.32E-47 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS09445 832da3aa8987e3513a06271201d24ca2 226 Pfam PF00857 Isochorismatase family 20 172 6.5E-21 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS06300 df2b1c59e2710edb1f28e2c7de102d45 291 SUPERFAMILY SSF53474 3 265 1.53E-26 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06300 df2b1c59e2710edb1f28e2c7de102d45 291 Gene3D G3DSA:3.40.50.1820 2 273 9.2E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06300 df2b1c59e2710edb1f28e2c7de102d45 291 Pfam PF12146 Serine aminopeptidase, S33 27 118 4.6E-12 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 Y880_RS06300 df2b1c59e2710edb1f28e2c7de102d45 291 PIRSF PIRSF037442 2 287 1.6E-95 T 29-03-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 SUPERFAMILY SSF56645 36 281 4.58E-51 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Gene3D G3DSA:2.40.110.10 160 280 3.8E-22 T 29-03-2018 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 285 451 1.5E-17 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 156 3.0E-10 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 SUPERFAMILY SSF47203 289 474 5.15E-40 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 271 2.1E-14 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Gene3D G3DSA:1.10.540.10 6 158 1.9E-15 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Gene3D G3DSA:1.20.140.10 281 466 1.5E-37 T 29-03-2018 Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 471 595 1.7E-29 T 29-03-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y880_RS23650 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 7 34 3.6E-8 T 29-03-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 SUPERFAMILY SSF55821 2 202 5.72E-87 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 Gene3D G3DSA:3.90.870.10 1 212 1.6E-95 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 PIRSF PIRSF001259 1 365 1.8E-116 T 29-03-2018 Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 SUPERFAMILY SSF142695 204 363 5.1E-40 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 198 1.0E-84 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.815 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 199 4.5E-75 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18510 a61b96969e0063705c657fb40f85d175 365 Pfam PF00925 GTP cyclohydrolase II 208 363 7.7E-30 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Y880_RS17925 0cef4aba86472f771ed21ab1017caa66 337 Pfam PF09084 NMT1/THI5 like 62 243 1.9E-20 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS17925 0cef4aba86472f771ed21ab1017caa66 337 SMART SM00062 27 250 4.3E-4 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17925 0cef4aba86472f771ed21ab1017caa66 337 Gene3D G3DSA:3.40.190.10 128 330 1.5E-36 T 29-03-2018 Y880_RS17925 0cef4aba86472f771ed21ab1017caa66 337 Gene3D G3DSA:3.40.190.10 22 127 4.6E-13 T 29-03-2018 Y880_RS17925 0cef4aba86472f771ed21ab1017caa66 337 SUPERFAMILY SSF53850 28 247 9.5E-46 T 29-03-2018 Y880_RS17925 0cef4aba86472f771ed21ab1017caa66 337 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 28 326 8.6E-132 T 29-03-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 Y880_RS08165 13f75c8a5598e4e70d2b89a9ac3080e2 378 Pfam PF03497 Anthrax toxin LF subunit 40 203 1.7E-67 T 29-03-2018 IPR005165 Anthrax toxin, edema factor, central GO:0005576|GO:0008294|GO:0009405 KEGG: 00230+4.6.1.1 Y880_RS08165 13f75c8a5598e4e70d2b89a9ac3080e2 378 SUPERFAMILY SSF81298 26 378 1.83E-138 T 29-03-2018 IPR035099 Anthrax toxin, edema factor, C-terminal KEGG: 00230+4.6.1.1 Y880_RS08165 13f75c8a5598e4e70d2b89a9ac3080e2 378 Gene3D G3DSA:3.90.1760.10 67 211 4.7E-38 T 29-03-2018 IPR005165 Anthrax toxin, edema factor, central GO:0005576|GO:0008294|GO:0009405 KEGG: 00230+4.6.1.1 Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 Pfam PF07702 UTRA domain 97 236 8.0E-37 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 SMART SM00345 16 75 5.5E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 SUPERFAMILY SSF64288 63 243 2.04E-47 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 SUPERFAMILY SSF46785 7 79 2.19E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 Gene3D G3DSA:3.40.1410.10 75 244 2.3E-43 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 SMART SM00866 96 236 5.1E-33 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 8.7E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 8.7E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 Gene3D G3DSA:1.10.10.10 2 74 3.5E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08840 1460251549d9744fca245ff5c8082a4f 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 1.5E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS21655 8f38be811f4cd2db944a6156e450bc54 327 Gene3D G3DSA:3.90.660.10 58 286 4.3E-61 T 29-03-2018 Y880_RS21655 8f38be811f4cd2db944a6156e450bc54 327 Gene3D G3DSA:3.50.50.60 3 57 1.3E-4 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21655 8f38be811f4cd2db944a6156e450bc54 327 Pfam PF01593 Flavin containing amine oxidoreductase 109 324 3.0E-10 T 29-03-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Y880_RS21655 8f38be811f4cd2db944a6156e450bc54 327 SUPERFAMILY SSF51905 287 327 6.33E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21655 8f38be811f4cd2db944a6156e450bc54 327 SUPERFAMILY SSF51905 2 196 6.33E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21655 8f38be811f4cd2db944a6156e450bc54 327 Hamap MF_02074 Renalase. 1 327 62.756 T 29-03-2018 IPR034721 Bacterial renalase GO:0000166|GO:0016491 Y880_RS21655 8f38be811f4cd2db944a6156e450bc54 327 Pfam PF13450 NAD(P)-binding Rossmann-like domain 7 68 2.1E-15 T 29-03-2018 Y880_RS15175 137893beae7a1acd36d0669a92f3c588 88 Gene3D G3DSA:1.10.10.710 20 80 1.9E-26 T 29-03-2018 Y880_RS15175 137893beae7a1acd36d0669a92f3c588 88 Pfam PF07130 YebG protein 1 72 2.6E-26 T 29-03-2018 IPR009813 Uncharacterised protein family YebG Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 SUPERFAMILY SSF49354 24 150 1.41E-39 T 29-03-2018 IPR008962 PapD-like Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 Gene3D G3DSA:2.60.40.10 152 248 9.5E-16 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 150 2.8E-41 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 239 1.5E-12 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 SUPERFAMILY SSF49584 154 246 2.88E-13 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 132 147 2.3E-27 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 106 123 2.3E-27 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 171 186 2.3E-27 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 78 99 2.3E-27 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 29 38 2.3E-27 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07850 67014f6fa2154d5fe1d9a633a2d9926f 248 Gene3D G3DSA:2.60.40.10 28 151 1.5E-35 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 625 641 1.4E-15 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 503 521 1.4E-15 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 463 481 1.4E-15 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 381 400 1.4E-15 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 SUPERFAMILY SSF51395 4 366 9.3E-114 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 SUPERFAMILY SSF51905 562 657 2.88E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 SUPERFAMILY SSF51905 466 524 2.88E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 626 640 2.6E-6 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 380 402 2.6E-6 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 10 332 6.5E-87 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 SUPERFAMILY SSF51971 337 526 2.77E-43 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 Gene3D G3DSA:3.40.50.720 374 482 3.1E-23 T 29-03-2018 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 379 642 9.1E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 Gene3D G3DSA:3.50.50.60 483 632 1.1E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13470 61f29b36aded263e1c2e620cd63aa05f 679 Gene3D G3DSA:3.20.20.70 6 373 3.3E-112 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 SMART SM00823 Phosphopantetheine attachment site 510 579 0.0012 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 ProSitePatterns PS00455 Putative AMP-binding domain signature. 146 157 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 SUPERFAMILY SSF56801 6 522 1.19E-137 T 29-03-2018 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Gene3D G3DSA:1.10.1200.10 516 582 2.6E-17 T 29-03-2018 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Pfam PF00550 Phosphopantetheine attachment site 514 573 8.0E-10 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 SUPERFAMILY SSF51735 614 915 1.17E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 SUPERFAMILY SSF51735 944 963 1.17E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Gene3D G3DSA:3.40.50.980 1 129 1.9E-30 T 29-03-2018 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Gene3D G3DSA:3.40.50.980 130 302 1.1E-36 T 29-03-2018 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Gene3D G3DSA:2.30.38.10 303 387 1.0E-20 T 29-03-2018 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 SUPERFAMILY SSF47336 510 576 3.66E-14 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Gene3D G3DSA:3.40.50.720 615 975 2.0E-31 T 29-03-2018 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Pfam PF07993 Male sterility protein 623 866 8.3E-50 T 29-03-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Pfam PF13193 AMP-binding enzyme C-terminal domain 404 482 7.1E-12 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 ProSitePatterns PS00012 Phosphopantetheine attachment site. 534 549 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 31 419 8.9E-111 T 29-03-2018 IPR010071 Amino acid adenylation domain Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Gene3D G3DSA:3.30.300.30 390 515 4.6E-37 T 29-03-2018 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 Pfam PF00501 AMP-binding enzyme 10 395 8.1E-82 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS18635 527774eec9bbe63e9ec19326089b8199 991 TIGRFAM TIGR01746 Thioester-redct: thioester reductase domain 620 989 1.6E-119 T 29-03-2018 IPR010080 Thioester reductase-like domain Y880_RS29335 2899dae332d8d2ade01ccf120dd99963 233 SUPERFAMILY SSF50800 4 225 1.62E-77 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS29335 2899dae332d8d2ade01ccf120dd99963 233 Gene3D G3DSA:2.40.33.20 1 233 5.6E-54 T 29-03-2018 Y880_RS29335 2899dae332d8d2ade01ccf120dd99963 233 Pfam PF03473 MOSC domain 49 160 2.5E-21 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y880_RS29335 2899dae332d8d2ade01ccf120dd99963 233 Pfam PF03475 3-alpha domain 171 213 3.5E-15 T 29-03-2018 IPR005163 3-alpha domain Y880_RS04680 6ba06b9950648442ad3eb38e5d453384 108 Gene3D G3DSA:3.30.1310.10 1 108 7.0E-44 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y880_RS04680 6ba06b9950648442ad3eb38e5d453384 108 SUPERFAMILY SSF82607 10 102 5.89E-36 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y880_RS04680 6ba06b9950648442ad3eb38e5d453384 108 PIRSF PIRSF004555 2 108 1.5E-37 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y880_RS04680 6ba06b9950648442ad3eb38e5d453384 108 Pfam PF02575 YbaB/EbfC DNA-binding family 10 99 9.4E-35 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y880_RS04680 6ba06b9950648442ad3eb38e5d453384 108 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 104 1.4E-33 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y880_RS04680 6ba06b9950648442ad3eb38e5d453384 108 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 97 23.277 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y880_RS29550 241489e0cd3ca166f2f1880e3bf46d6d 115 SUPERFAMILY SSF160631 4 108 6.41E-11 T 29-03-2018 Y880_RS29550 241489e0cd3ca166f2f1880e3bf46d6d 115 Gene3D G3DSA:3.40.1580.10 2 109 4.6E-14 T 29-03-2018 Y880_RS27420 40bcca9168d56d1133ea143662372d9e 312 SUPERFAMILY SSF53850 91 296 4.5E-43 T 29-03-2018 Y880_RS27420 40bcca9168d56d1133ea143662372d9e 312 Gene3D G3DSA:1.10.10.10 3 84 7.7E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27420 40bcca9168d56d1133ea143662372d9e 312 Pfam PF03466 LysR substrate binding domain 90 293 7.6E-44 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27420 40bcca9168d56d1133ea143662372d9e 312 Gene3D G3DSA:3.40.190.10 178 264 1.7E-25 T 29-03-2018 Y880_RS27420 40bcca9168d56d1133ea143662372d9e 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.5E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27420 40bcca9168d56d1133ea143662372d9e 312 Gene3D G3DSA:3.40.190.10 89 177 3.3E-8 T 29-03-2018 Y880_RS27420 40bcca9168d56d1133ea143662372d9e 312 SUPERFAMILY SSF46785 4 85 2.1E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07420 c5d4ec78533c8005a7055a3e1e3258aa 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 163 5.5E-16 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07420 c5d4ec78533c8005a7055a3e1e3258aa 168 Gene3D G3DSA:1.10.10.10 71 168 1.4E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07420 c5d4ec78533c8005a7055a3e1e3258aa 168 Pfam PF08281 Sigma-70, region 4 110 162 5.6E-11 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07420 c5d4ec78533c8005a7055a3e1e3258aa 168 Gene3D G3DSA:1.10.1740.10 4 70 1.4E-11 T 29-03-2018 Y880_RS07420 c5d4ec78533c8005a7055a3e1e3258aa 168 Pfam PF04542 Sigma-70 region 2 19 79 3.5E-13 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07420 c5d4ec78533c8005a7055a3e1e3258aa 168 SUPERFAMILY SSF88659 90 166 1.44E-12 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07420 c5d4ec78533c8005a7055a3e1e3258aa 168 SUPERFAMILY SSF88946 6 76 5.49E-11 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 2.1E-149 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 SUPERFAMILY SSF53901 272 390 1.09E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 Gene3D G3DSA:3.40.47.10 152 267 4.3E-30 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 Gene3D G3DSA:3.40.47.10 1 148 1.7E-36 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 Gene3D G3DSA:3.40.47.10 268 390 4.8E-35 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 PIRSF PIRSF000429 1 392 1.3E-132 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 SUPERFAMILY SSF53901 3 270 4.32E-93 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 Pfam PF02803 Thiolase, C-terminal domain 271 390 4.0E-51 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 Pfam PF00108 Thiolase, N-terminal domain 4 262 1.2E-106 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS07160 6a13506ba4814dd2698b1d7a7bc713a8 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Y880_RS27200 caac0153f1c4d04aa2f29a8bbeaad2c5 242 SUPERFAMILY SSF51735 4 228 3.51E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS27200 caac0153f1c4d04aa2f29a8bbeaad2c5 242 Gene3D G3DSA:3.40.50.720 3 232 1.1E-38 T 29-03-2018 Y880_RS27200 caac0153f1c4d04aa2f29a8bbeaad2c5 242 Pfam PF00106 short chain dehydrogenase 5 194 6.8E-35 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27200 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.9E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27200 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27200 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.9E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS27200 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.9E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS11020 cc69f79a85dc0017b9b10d4000301248 411 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 338 1.1E-48 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS11020 cc69f79a85dc0017b9b10d4000301248 411 Gene3D G3DSA:3.20.20.70 1 367 5.8E-111 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS11020 cc69f79a85dc0017b9b10d4000301248 411 SUPERFAMILY SSF51395 2 348 1.16E-101 T 29-03-2018 Y880_RS13660 c6d3684162216b03f2cbe4156f9ed489 267 SUPERFAMILY SSF54593 4 115 7.65E-25 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS13660 c6d3684162216b03f2cbe4156f9ed489 267 Gene3D G3DSA:3.10.180.10 7 123 1.3E-18 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS13660 c6d3684162216b03f2cbe4156f9ed489 267 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 112 1.5E-4 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS13660 c6d3684162216b03f2cbe4156f9ed489 267 SUPERFAMILY SSF55729 125 257 7.89E-19 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS13660 c6d3684162216b03f2cbe4156f9ed489 267 Gene3D G3DSA:3.40.630.30 124 262 2.6E-19 T 29-03-2018 Y880_RS13660 c6d3684162216b03f2cbe4156f9ed489 267 Pfam PF00583 Acetyltransferase (GNAT) family 169 237 4.2E-8 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS27355 b2fac67eacb30e25d2b99c33ee2dbd7d 320 Gene3D G3DSA:2.60.120.330 1 314 2.0E-106 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS27355 b2fac67eacb30e25d2b99c33ee2dbd7d 320 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 4 128 4.5E-32 T 29-03-2018 IPR026992 Non-haem dioxygenase N-terminal domain Y880_RS27355 b2fac67eacb30e25d2b99c33ee2dbd7d 320 SUPERFAMILY SSF51197 3 314 6.87E-102 T 29-03-2018 Y880_RS27355 b2fac67eacb30e25d2b99c33ee2dbd7d 320 PRINTS PR00682 Isopenicillin N synthase signature 149 165 6.2E-14 T 29-03-2018 Y880_RS27355 b2fac67eacb30e25d2b99c33ee2dbd7d 320 PRINTS PR00682 Isopenicillin N synthase signature 234 260 6.2E-14 T 29-03-2018 Y880_RS27355 b2fac67eacb30e25d2b99c33ee2dbd7d 320 PRINTS PR00682 Isopenicillin N synthase signature 27 44 6.2E-14 T 29-03-2018 Y880_RS27355 b2fac67eacb30e25d2b99c33ee2dbd7d 320 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 174 274 6.3E-25 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 Pfam PF00455 DeoR C terminal sensor domain 75 231 2.4E-47 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 2.6E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.3E-9 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.3E-9 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 SMART SM00420 6 58 9.2E-16 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 SMART SM01134 73 232 4.9E-63 T 29-03-2018 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 Gene3D G3DSA:3.40.50.1360 71 248 7.2E-39 T 29-03-2018 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 SUPERFAMILY SSF46785 4 77 2.25E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 SUPERFAMILY SSF100950 75 232 4.71E-26 T 29-03-2018 Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 Gene3D G3DSA:1.10.10.10 1 70 3.9E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04425 0e4b145d825a2c058febe7712c316d76 258 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Y880_RS22710 6be6b54749d07984f83a9a7f58613370 123 Gene3D G3DSA:3.30.780.10 38 121 1.7E-16 T 29-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 Y880_RS22710 6be6b54749d07984f83a9a7f58613370 123 Pfam PF01253 Translation initiation factor SUI1 49 117 2.7E-16 T 29-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 Y880_RS22710 6be6b54749d07984f83a9a7f58613370 123 SUPERFAMILY SSF55159 13 120 1.15E-27 T 29-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 Y880_RS22710 6be6b54749d07984f83a9a7f58613370 123 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 14 123 9.5E-38 T 29-03-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 Y880_RS22710 6be6b54749d07984f83a9a7f58613370 123 PIRSF PIRSF037511 1 123 2.4E-44 T 29-03-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 29-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 Gene3D G3DSA:3.50.50.60 5 264 3.2E-76 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 Pfam PF13932 GidA associated domain 402 614 6.3E-77 T 29-03-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 SMART SM01228 544 615 3.5E-42 T 29-03-2018 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 29-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 620 1.3E-278 T 29-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 622 42.543 T 29-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.4E-5 T 29-03-2018 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 8.4E-5 T 29-03-2018 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 Pfam PF01134 Glucose inhibited division protein A 8 399 8.6E-170 T 29-03-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 SUPERFAMILY SSF51905 97 261 2.0E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS26550 90f5f85afc7fac55f3cc619ea42cc6c9 630 SUPERFAMILY SSF51905 7 66 2.0E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 321 1.1E-108 T 29-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 SUPERFAMILY SSF50715 341 552 4.6E-69 T 29-03-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 35 46 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:2.40.240.10 345 463 5.8E-44 T 29-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:2.40.240.10 464 551 3.3E-31 T 29-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 46 57 2.7E-8 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 61 74 2.7E-8 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 44 2.7E-8 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 211 221 2.7E-8 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 SUPERFAMILY SSF52374 28 347 8.16E-98 T 29-03-2018 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:3.40.50.620 20 42 0.04 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 30 553 5.2E-229 T 29-03-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:3.40.50.620 156 261 1.8E-22 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:3.40.50.620 43 153 3.7E-39 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 553 54.019 T 29-03-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 341 532 7.0E-58 T 29-03-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y880_RS06065 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:1.10.1160.10 262 339 2.5E-33 T 29-03-2018 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 499 599 3.0E-19 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 Gene3D G3DSA:1.10.1040.10 498 604 9.0E-16 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 SUPERFAMILY SSF51735 316 497 1.55E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 496 2.0E-59 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 SUPERFAMILY SSF52096 3 297 8.89E-62 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 203 1.3E-31 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 Gene3D G3DSA:1.10.1040.10 627 714 1.3E-16 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 Gene3D G3DSA:3.40.50.720 256 497 8.5E-63 T 29-03-2018 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 SUPERFAMILY SSF48179 498 640 1.7E-21 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 SUPERFAMILY SSF48179 622 714 3.4E-18 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS05760 5d2c32c8bc09de753455b99603e9e436 714 Gene3D G3DSA:3.90.226.10 2 219 2.6E-48 T 29-03-2018 Y880_RS20305 00872a5d2afe83f5a208ca86829e7014 405 Gene3D G3DSA:3.60.70.12 8 276 6.4E-96 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y880_RS20305 00872a5d2afe83f5a208ca86829e7014 405 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 405 152.787 T 29-03-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y880_RS20305 00872a5d2afe83f5a208ca86829e7014 405 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 14 405 1.2E-113 T 29-03-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y880_RS20305 00872a5d2afe83f5a208ca86829e7014 405 SUPERFAMILY SSF56266 14 402 4.05E-131 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y880_RS20305 00872a5d2afe83f5a208ca86829e7014 405 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 22 405 0.0 T 29-03-2018 Y880_RS20305 00872a5d2afe83f5a208ca86829e7014 405 Pfam PF01960 ArgJ family 21 405 5.5E-136 T 29-03-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y880_RS13460 c5eccc1af9f1365b591504327f4e9eb5 299 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 283 2.2E-15 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS13460 c5eccc1af9f1365b591504327f4e9eb5 299 Gene3D G3DSA:3.40.50.1100 118 297 5.3E-13 T 29-03-2018 Y880_RS13460 c5eccc1af9f1365b591504327f4e9eb5 299 SUPERFAMILY SSF53686 8 294 1.2E-54 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS13460 c5eccc1af9f1365b591504327f4e9eb5 299 PIRSF PIRSF006278 1 298 4.0E-72 T 29-03-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Y880_RS13460 c5eccc1af9f1365b591504327f4e9eb5 299 Gene3D G3DSA:3.40.50.1100 31 117 5.1E-19 T 29-03-2018 Y880_RS13015 24fe2738c3c00c454335d09e9c2a38d5 209 Pfam PF10972 Peptidoglycan-binding protein, CsiV 61 173 4.8E-19 T 29-03-2018 IPR021241 Peptidoglycan-binding protein, CsiV Y880_RS17965 0a65cf3107ae9a6889778fda7fd90de4 196 Pfam PF13302 Acetyltransferase (GNAT) domain 21 162 1.1E-29 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS17965 0a65cf3107ae9a6889778fda7fd90de4 196 Gene3D G3DSA:3.40.630.30 6 196 7.2E-25 T 29-03-2018 Y880_RS17965 0a65cf3107ae9a6889778fda7fd90de4 196 SUPERFAMILY SSF55729 15 189 2.08E-36 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 SUPERFAMILY SSF111369 198 295 1.7E-11 T 29-03-2018 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 SUPERFAMILY SSF111369 128 189 2.09E-5 T 29-03-2018 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 355 2.2E-9 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 68 88 2.2E-9 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 Pfam PF00529 HlyD membrane-fusion protein of T1SS 31 350 1.7E-8 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 Gene3D G3DSA:1.10.287.470 126 188 4.2E-7 T 29-03-2018 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 Gene3D G3DSA:1.20.1600.10 189 318 7.9E-20 T 29-03-2018 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 Gene3D G3DSA:2.40.50.100 57 125 4.7E-14 T 29-03-2018 Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 297 1.9E-18 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS13725 d89254e158d3519d8983814b088c72e3 355 SUPERFAMILY SSF111369 56 115 7.19E-7 T 29-03-2018 Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 473 43.397 T 29-03-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 Gene3D G3DSA:3.40.1190.20 2 309 4.1E-60 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 Pfam PF01467 Cytidylyltransferase-like 344 434 3.2E-16 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 341 407 2.2E-16 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 SUPERFAMILY SSF53613 12 309 1.56E-58 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 5 311 3.8E-126 T 29-03-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 Gene3D G3DSA:3.40.50.620 325 473 1.5E-26 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 SUPERFAMILY SSF52374 342 472 9.78E-25 T 29-03-2018 Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 Pfam PF00294 pfkB family carbohydrate kinase 13 304 1.0E-48 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y880_RS23520 b5417c68102ad35df6bbdef649c53502 473 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 331 472 1.3E-65 T 29-03-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-32 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.1E-16 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.1E-16 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.1E-16 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 Gene3D G3DSA:4.10.520.10 1 90 2.9E-33 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 SMART SM00411 1 90 3.5E-38 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS25360 6ef67f0f273137b64cc28549bf24951c 90 SUPERFAMILY SSF47729 1 90 2.65E-31 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS28720 f753441029432834b702d842c3485ff1 291 SMART SM00138 17 283 1.3E-127 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS28720 f753441029432834b702d842c3485ff1 291 Pfam PF01739 CheR methyltransferase, SAM binding domain 86 272 6.0E-59 T 29-03-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y880_RS28720 f753441029432834b702d842c3485ff1 291 Gene3D G3DSA:1.10.155.10 10 84 1.3E-16 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS28720 f753441029432834b702d842c3485ff1 291 Pfam PF03705 CheR methyltransferase, all-alpha domain 18 70 5.3E-10 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS28720 f753441029432834b702d842c3485ff1 291 Gene3D G3DSA:3.40.50.150 85 283 1.3E-35 T 29-03-2018 Y880_RS28720 f753441029432834b702d842c3485ff1 291 SUPERFAMILY SSF53335 87 275 1.25E-42 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS28720 f753441029432834b702d842c3485ff1 291 SUPERFAMILY SSF47757 7 85 2.88E-15 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS28720 f753441029432834b702d842c3485ff1 291 PRINTS PR00996 Glutamate methyltransferase family signature 39 52 2.3E-36 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS28720 f753441029432834b702d842c3485ff1 291 PRINTS PR00996 Glutamate methyltransferase family signature 118 138 2.3E-36 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS28720 f753441029432834b702d842c3485ff1 291 PRINTS PR00996 Glutamate methyltransferase family signature 79 91 2.3E-36 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS28720 f753441029432834b702d842c3485ff1 291 PRINTS PR00996 Glutamate methyltransferase family signature 223 237 2.3E-36 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS28720 f753441029432834b702d842c3485ff1 291 PRINTS PR00996 Glutamate methyltransferase family signature 154 170 2.3E-36 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS28720 f753441029432834b702d842c3485ff1 291 PRINTS PR00996 Glutamate methyltransferase family signature 242 265 2.3E-36 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 Gene3D G3DSA:1.20.200.10 133 411 6.4E-71 T 29-03-2018 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00145 Argininosuccinate lyase family signature 127 149 3.4E-5 T 29-03-2018 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00145 Argininosuccinate lyase family signature 169 189 3.4E-5 T 29-03-2018 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00145 Argininosuccinate lyase family signature 311 327 3.4E-5 T 29-03-2018 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 SUPERFAMILY SSF48557 3 454 9.42E-132 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 Gene3D G3DSA:1.10.275.10 2 132 3.3E-50 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 Pfam PF10415 Fumarase C C-terminus 402 454 5.7E-20 T 29-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 Pfam PF00206 Lyase 12 336 4.2E-86 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 456 78.574 T 29-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 ProSitePatterns PS00163 Fumarate lyases signature. 311 320 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 174 192 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 265 292 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 128 146 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 311 327 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS20655 f7f9519411539de56ac61298c59fa69b 458 Gene3D G3DSA:1.10.40.30 412 455 2.1E-20 T 29-03-2018 Y880_RS14905 6471ecf2e04cf2cc046854f58fe35c3a 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 6.7E-8 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS14905 6471ecf2e04cf2cc046854f58fe35c3a 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 237 255 6.7E-8 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS14905 6471ecf2e04cf2cc046854f58fe35c3a 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 81 6.7E-8 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS14905 6471ecf2e04cf2cc046854f58fe35c3a 385 Gene3D G3DSA:3.40.50.2300 132 309 8.6E-31 T 29-03-2018 Y880_RS14905 6471ecf2e04cf2cc046854f58fe35c3a 385 Gene3D G3DSA:3.40.50.2300 9 131 2.1E-13 T 29-03-2018 Y880_RS14905 6471ecf2e04cf2cc046854f58fe35c3a 385 Pfam PF13433 Periplasmic binding protein domain 10 369 5.6E-115 T 29-03-2018 Y880_RS14905 6471ecf2e04cf2cc046854f58fe35c3a 385 SUPERFAMILY SSF53822 10 375 1.82E-89 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 Gene3D G3DSA:3.30.1050.10 523 652 4.8E-26 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 SMART SM00849 122 344 5.1E-24 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 Pfam PF14864 Alkyl sulfatase C-terminal 529 652 1.4E-32 T 29-03-2018 IPR029229 Alkyl sulfatase, C-terminal Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 Pfam PF14863 Alkyl sulfatase dimerisation 381 519 2.0E-56 T 29-03-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 Gene3D G3DSA:3.60.15.10 95 388 5.9E-25 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 SUPERFAMILY SSF56281 22 521 1.15E-154 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 Pfam PF00753 Metallo-beta-lactamase superfamily 118 344 1.1E-47 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00310 a1420a20f114668e4b78cd18c5261057 658 SUPERFAMILY SSF55718 531 652 1.01E-34 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 SUPERFAMILY SSF53187 5 173 5.71E-61 T 29-03-2018 Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 SUPERFAMILY SSF53187 304 379 5.71E-61 T 29-03-2018 Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 Pfam PF07687 Peptidase dimerisation domain 171 280 3.2E-25 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 6 377 1.4E-123 T 29-03-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 SUPERFAMILY SSF55031 174 279 1.09E-21 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 Gene3D G3DSA:3.40.630.10 2 281 4.2E-61 T 29-03-2018 Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 Pfam PF01546 Peptidase family M20/M25/M40 66 378 6.1E-37 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Y880_RS25600 7a3e51ac572cd116a0862026f25c0bf9 384 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 100 137 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Y880_RS05570 8b970db150ffb5b89e62797058fed54b 123 Gene3D G3DSA:3.30.1460.10 4 119 1.6E-23 T 29-03-2018 Y880_RS05570 8b970db150ffb5b89e62797058fed54b 123 TIGRFAM TIGR02503 type_III_SycN: type III secretion chaperone SycN 4 122 2.1E-47 T 29-03-2018 IPR012673 Type III secretion system chaperone SycN GO:0009306 Y880_RS05570 8b970db150ffb5b89e62797058fed54b 123 SUPERFAMILY SSF69635 2 121 3.45E-40 T 29-03-2018 Y880_RS19160 fee7f5c373e36174b32b7d1e6ab8dcb3 247 SUPERFAMILY SSF53335 6 246 3.23E-38 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS19160 fee7f5c373e36174b32b7d1e6ab8dcb3 247 Pfam PF13649 Methyltransferase domain 45 135 1.8E-11 T 29-03-2018 Y880_RS19160 fee7f5c373e36174b32b7d1e6ab8dcb3 247 Gene3D G3DSA:3.40.50.150 22 235 2.6E-23 T 29-03-2018 Y880_RS26010 4aa9b80a2b0a644a0e582d997e3987b1 120 Pfam PF09498 Protein of unknown function (DUF2388) 54 117 4.9E-21 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS26010 4aa9b80a2b0a644a0e582d997e3987b1 120 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 51 117 2.7E-19 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS26090 18663f7b5d7c1398f5206fe0f20cd400 155 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 38 153 2.4E-46 T 29-03-2018 Y880_RS26090 18663f7b5d7c1398f5206fe0f20cd400 155 SUPERFAMILY SSF89872 27 155 3.66E-50 T 29-03-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 Y880_RS26090 18663f7b5d7c1398f5206fe0f20cd400 155 PIRSF PIRSF009103 1 155 1.4E-67 T 29-03-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 Y880_RS26090 18663f7b5d7c1398f5206fe0f20cd400 155 Gene3D G3DSA:3.40.1420.10 30 148 3.1E-36 T 29-03-2018 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 SUPERFAMILY SSF46626 38 168 1.28E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 Pfam PF00034 Cytochrome c 47 146 1.4E-5 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 Gene3D G3DSA:1.10.760.10 25 160 3.6E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 Gene3D G3DSA:1.10.760.10 322 427 1.6E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 SUPERFAMILY SSF46626 327 419 2.91E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 327 407 9.1E-10 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 PIRSF PIRSF000018 15 433 5.3E-137 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 SUPERFAMILY SSF46626 190 296 6.29E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05040 74d50147cb28cba28932ccd95a656138 433 Gene3D G3DSA:1.10.760.10 187 313 8.4E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS06765 64ddc81459df03bf516301b46a74703c 675 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 126 659 1.4E-133 T 29-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 Y880_RS06765 64ddc81459df03bf516301b46a74703c 675 Gene3D G3DSA:3.20.70.20 136 665 1.0E-183 T 29-03-2018 Y880_RS06765 64ddc81459df03bf516301b46a74703c 675 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 127 658 4.8E-168 T 29-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 Y880_RS06765 64ddc81459df03bf516301b46a74703c 675 SUPERFAMILY SSF51998 127 660 3.66E-153 T 29-03-2018 Y880_RS06765 64ddc81459df03bf516301b46a74703c 675 Pfam PF03477 ATP cone domain 14 96 4.3E-20 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y880_RS03905 27e6f131125e8b022e95f0ef93073190 196 Pfam PF01583 Adenylylsulphate kinase 23 176 5.1E-67 T 29-03-2018 Y880_RS03905 27e6f131125e8b022e95f0ef93073190 196 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 22 194 36.037 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y880_RS03905 27e6f131125e8b022e95f0ef93073190 196 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 11 190 6.4E-69 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y880_RS03905 27e6f131125e8b022e95f0ef93073190 196 SUPERFAMILY SSF52540 19 191 6.04E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03905 27e6f131125e8b022e95f0ef93073190 196 Gene3D G3DSA:3.40.50.300 19 195 5.5E-51 T 29-03-2018 Y880_RS15325 64aa95c7bc7f06046cceb08998807359 274 SUPERFAMILY SSF52540 21 222 1.36E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15325 64aa95c7bc7f06046cceb08998807359 274 Gene3D G3DSA:3.40.50.300 20 227 1.2E-57 T 29-03-2018 Y880_RS15325 64aa95c7bc7f06046cceb08998807359 274 SMART SM00382 45 219 9.6E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS15325 64aa95c7bc7f06046cceb08998807359 274 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS15325 64aa95c7bc7f06046cceb08998807359 274 Pfam PF00005 ABC transporter 36 169 2.4E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS16915 284c55f41a1465c81a9f02e0cc8304a4 249 Gene3D G3DSA:3.40.50.1110 50 243 3.9E-22 T 29-03-2018 Y880_RS16915 284c55f41a1465c81a9f02e0cc8304a4 249 SUPERFAMILY SSF52266 51 239 3.66E-30 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS16915 284c55f41a1465c81a9f02e0cc8304a4 249 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 58 229 3.9E-15 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS19900 70390495136abc708a26802d5f734419 443 Pfam PF01882 Protein of unknown function DUF58 199 283 6.2E-23 T 29-03-2018 IPR002881 Domain of unknown function DUF58 Y880_RS19900 70390495136abc708a26802d5f734419 443 SUPERFAMILY SSF53300 240 365 1.61E-7 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS19900 70390495136abc708a26802d5f734419 443 Gene3D G3DSA:3.40.50.410 211 381 2.2E-22 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS04745 47b85eb241fea8b0c719959ccf04bd57 460 PIRSF PIRSF000167 3 459 4.0E-168 T 29-03-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 Y880_RS04745 47b85eb241fea8b0c719959ccf04bd57 460 SUPERFAMILY SSF102114 5 448 1.27E-134 T 29-03-2018 Y880_RS04745 47b85eb241fea8b0c719959ccf04bd57 460 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 460 3.1E-173 T 29-03-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 Y880_RS04745 47b85eb241fea8b0c719959ccf04bd57 460 SMART SM00729 53 276 4.8E-51 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS04745 47b85eb241fea8b0c719959ccf04bd57 460 Gene3D G3DSA:3.20.20.70 38 357 5.3E-48 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS04745 47b85eb241fea8b0c719959ccf04bd57 460 Pfam PF06969 HemN C-terminal domain 369 435 5.0E-12 T 29-03-2018 IPR010723 HemN, C-terminal Y880_RS04745 47b85eb241fea8b0c719959ccf04bd57 460 Pfam PF04055 Radical SAM superfamily 58 232 3.4E-18 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 Gene3D G3DSA:3.90.226.10 14 287 3.1E-68 T 29-03-2018 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 6.0E-38 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 6.0E-38 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 6.0E-38 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 6.0E-38 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 6.0E-38 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 2 283 37.994 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 Pfam PF01039 Carboxyl transferase domain 98 242 4.5E-17 T 29-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 14 286 6.8E-133 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS13585 8ce4c28349bf87acf6b1918c73a18567 290 SUPERFAMILY SSF52096 27 285 6.53E-88 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 Pfam PF00158 Sigma-54 interaction domain 149 313 5.0E-63 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 SUPERFAMILY SSF52540 150 388 1.23E-71 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 SUPERFAMILY SSF52172 9 192 3.27E-39 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 Pfam PF00072 Response regulator receiver domain 11 119 4.1E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 Pfam PF02954 Bacterial regulatory protein, Fis family 407 447 1.1E-9 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:3.40.50.300 140 318 1.1E-24 T 29-03-2018 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 SMART SM00448 9 120 2.4E-34 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:1.10.10.60 394 449 5.0E-10 T 29-03-2018 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:1.10.8.60 319 393 1.1E-24 T 29-03-2018 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 SMART SM00382 167 318 4.6E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 360 369 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:3.40.50.2300 1 139 5.5E-33 T 29-03-2018 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 SUPERFAMILY SSF46689 360 449 1.31E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS26100 0f2591e24d6b1fe4e970175bc1886388 449 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 171 184 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS08270 e8621cb757b7c27cdd9a5c9ff5ddef56 337 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 38 329 5.7E-82 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Y880_RS08270 e8621cb757b7c27cdd9a5c9ff5ddef56 337 Gene3D G3DSA:3.40.718.10 1 337 1.4E-104 T 29-03-2018 Y880_RS08270 e8621cb757b7c27cdd9a5c9ff5ddef56 337 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 5 333 33.465 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Y880_RS08270 e8621cb757b7c27cdd9a5c9ff5ddef56 337 SUPERFAMILY SSF53659 7 334 7.73E-91 T 29-03-2018 Y880_RS07030 2f03dc354fe7adc8d116d8e985c37f97 399 Pfam PF13609 Gram-negative porin 27 378 2.7E-24 T 29-03-2018 Y880_RS07030 2f03dc354fe7adc8d116d8e985c37f97 399 SUPERFAMILY SSF56935 34 398 3.66E-28 T 29-03-2018 Y880_RS07030 2f03dc354fe7adc8d116d8e985c37f97 399 Gene3D G3DSA:2.40.160.10 19 398 8.7E-24 T 29-03-2018 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.1E-12 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.2E-9 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 SUPERFAMILY SSF52540 546 852 1.67E-81 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 758 1.8E-55 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:1.10.8.60 344 547 1.7E-44 T 29-03-2018 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 5.5E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 5.5E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 5.5E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 5.5E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 853 0.0 T 29-03-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:1.10.1780.10 1 151 4.5E-32 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 334 4.9E-12 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 SMART SM00382 198 343 2.1E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 SMART SM00382 597 765 4.0E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:3.40.50.300 157 342 1.3E-23 T 29-03-2018 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:3.40.50.300 552 763 1.2E-54 T 29-03-2018 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 SUPERFAMILY SSF81923 4 155 1.96E-38 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 842 2.9E-25 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:1.10.8.60 764 854 1.4E-21 T 29-03-2018 Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 SMART SM01086 764 853 1.4E-36 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS21040 9bd3b37841e722ae71996bd433ec927a 854 SUPERFAMILY SSF52540 159 545 2.51E-98 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 Gene3D G3DSA:3.10.310.10 127 263 6.4E-52 T 29-03-2018 Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 29-03-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 1.7E-90 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 40.365 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 Pfam PF01678 Diaminopimelate epimerase 5 125 3.7E-33 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 Pfam PF01678 Diaminopimelate epimerase 154 269 5.3E-27 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 SUPERFAMILY SSF54506 3 276 3.77E-52 T 29-03-2018 Y880_RS25000 15c40745818dbc6a3121094a2d217019 276 Gene3D G3DSA:3.10.310.10 1 126 1.4E-48 T 29-03-2018 Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 SUPERFAMILY SSF50331 239 360 1.87E-17 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 Gene3D G3DSA:2.40.50.100 242 292 2.6E-6 T 29-03-2018 Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 SUPERFAMILY SSF52540 5 243 4.83E-88 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 SMART SM00382 30 213 6.2E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 Gene3D G3DSA:2.40.50.140 293 353 8.3E-5 T 29-03-2018 Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 36 356 2.0E-117 T 29-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 Gene3D G3DSA:3.40.50.300 1 241 5.9E-74 T 29-03-2018 Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 Pfam PF08402 TOBE domain 280 360 8.1E-16 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Y880_RS16185 1851ff129ebb2cf74fbc480598cbb9a1 363 Pfam PF00005 ABC transporter 21 163 7.8E-37 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS14020 545fc42df5c159a7e61ee90a3a9b6bf2 209 SUPERFAMILY SSF55821 1 204 3.05E-63 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain Y880_RS14020 545fc42df5c159a7e61ee90a3a9b6bf2 209 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 2.8E-62 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 Y880_RS14020 545fc42df5c159a7e61ee90a3a9b6bf2 209 Gene3D G3DSA:3.90.870.10 1 205 3.2E-56 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain Y880_RS14020 545fc42df5c159a7e61ee90a3a9b6bf2 209 Pfam PF01300 Telomere recombination 22 198 1.9E-44 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 344 372 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 284 295 3.7E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 411 431 3.7E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 357 376 3.7E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 331 347 3.7E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 378 395 3.7E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 233 3.7E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 Gene3D G3DSA:3.40.50.720 211 362 7.5E-41 T 29-03-2018 Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 221 445 2.9E-50 T 29-03-2018 Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 215 388 5.0E-7 T 29-03-2018 Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 Gene3D G3DSA:3.40.50.720 363 449 8.3E-21 T 29-03-2018 Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 SUPERFAMILY SSF51735 210 447 1.31E-60 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 284 295 2.3E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 337 345 2.3E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 357 376 2.3E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22435 9349c119e3de7a4d02b43e04e7a3d2a9 451 Gene3D G3DSA:3.40.50.720 135 203 0.19 T 29-03-2018 Y880_RS01930 16becbc61feb18a1b3d7970388505a2a 529 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 284 291 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS01930 16becbc61feb18a1b3d7970388505a2a 529 Gene3D G3DSA:3.40.309.10 301 498 1.1E-49 T 29-03-2018 Y880_RS01930 16becbc61feb18a1b3d7970388505a2a 529 Pfam PF00171 Aldehyde dehydrogenase family 51 511 5.7E-127 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS01930 16becbc61feb18a1b3d7970388505a2a 529 Gene3D G3DSA:3.40.605.10 31 300 3.5E-74 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS01930 16becbc61feb18a1b3d7970388505a2a 529 SUPERFAMILY SSF53720 50 516 1.7E-130 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 Pfam PF12796 Ankyrin repeats (3 copies) 17 78 1.9E-6 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 Pfam PF12796 Ankyrin repeats (3 copies) 89 182 1.2E-12 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 PRINTS PR01415 Ankyrin repeat signature 167 181 8.1E-7 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 PRINTS PR01415 Ankyrin repeat signature 114 129 8.1E-7 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 14 43 2300.0 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 47 76 1.5E-4 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 80 109 1800.0 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 146 180 0.7 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 113 142 0.017 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 Gene3D G3DSA:1.25.40.20 136 210 2.8E-21 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 Gene3D G3DSA:1.25.40.20 8 135 4.8E-35 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS09830 23f977daeb2ef07ff3116f464e5dcb36 210 SUPERFAMILY SSF48403 18 209 4.66E-47 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS11905 6b0eb5cff596e81d0c20445f0edaca84 959 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 65 339 9.5E-70 T 29-03-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase Y880_RS11905 6b0eb5cff596e81d0c20445f0edaca84 959 SUPERFAMILY SSF52540 482 610 3.95E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11905 6b0eb5cff596e81d0c20445f0edaca84 959 SUPERFAMILY SSF52540 645 900 3.95E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11905 6b0eb5cff596e81d0c20445f0edaca84 959 Gene3D G3DSA:3.40.50.300 529 895 2.2E-16 T 29-03-2018 Y880_RS11905 6b0eb5cff596e81d0c20445f0edaca84 959 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 54 949 0.0 T 29-03-2018 IPR022303 Conjugative transfer ATPase Y880_RS15220 e766a031d8b5f021a76cf60c0eb53172 456 Gene3D G3DSA:2.50.20.10 162 452 1.3E-55 T 29-03-2018 Y880_RS15220 e766a031d8b5f021a76cf60c0eb53172 456 Pfam PF07044 Protein of unknown function (DUF1329) 84 451 3.8E-153 T 29-03-2018 IPR010752 Protein of unknown function DUF1329 Y880_RS07155 0b98d5de4aca98813e101f57334311d2 218 SMART SM00882 6 202 5.8E-72 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS07155 0b98d5de4aca98813e101f57334311d2 218 Gene3D G3DSA:3.40.1080.10 3 214 3.4E-64 T 29-03-2018 Y880_RS07155 0b98d5de4aca98813e101f57334311d2 218 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 208 1.1E-98 T 29-03-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 Y880_RS07155 0b98d5de4aca98813e101f57334311d2 218 SUPERFAMILY SSF100950 4 216 3.27E-74 T 29-03-2018 Y880_RS07155 0b98d5de4aca98813e101f57334311d2 218 Pfam PF01144 Coenzyme A transferase 6 201 1.8E-41 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS07155 0b98d5de4aca98813e101f57334311d2 218 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 29-03-2018 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 SUPERFAMILY SSF52467 187 308 1.45E-48 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 29-03-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 7.0E-37 T 29-03-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 SMART SM00893 3 182 2.8E-55 T 29-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 Gene3D G3DSA:3.40.50.620 1 183 3.9E-43 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 Pfam PF01012 Electron transfer flavoprotein domain 4 169 2.3E-39 T 29-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 Gene3D G3DSA:3.40.50.1220 185 309 1.6E-60 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 SUPERFAMILY SSF52402 3 184 1.34E-56 T 29-03-2018 Y880_RS12745 2bc4dcec2dafa431f0e2d3394902314f 309 PIRSF PIRSF000089 1 309 4.7E-106 T 29-03-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Y880_RS01255 22fe643c9a5e21234f3f42b5a4eda2d3 340 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 2 334 1.2E-155 T 29-03-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y880_RS01255 22fe643c9a5e21234f3f42b5a4eda2d3 340 Gene3D G3DSA:3.40.630.30 1 272 8.3E-24 T 29-03-2018 Y880_RS01255 22fe643c9a5e21234f3f42b5a4eda2d3 340 Gene3D G3DSA:2.40.40.20 273 334 2.7E-13 T 29-03-2018 Y880_RS01255 22fe643c9a5e21234f3f42b5a4eda2d3 340 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 333 9.4E-138 T 29-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y880_RS01255 22fe643c9a5e21234f3f42b5a4eda2d3 340 SUPERFAMILY SSF55729 1 334 2.41E-128 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS01255 22fe643c9a5e21234f3f42b5a4eda2d3 340 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 2 334 1.8E-144 T 29-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 SMART SM00245 177 369 1.8E-75 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 SMART SM00228 105 176 1.6E-17 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 Gene3D G3DSA:3.90.226.10 183 429 1.5E-69 T 29-03-2018 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 SUPERFAMILY SSF52096 196 370 1.06E-82 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 SUPERFAMILY SSF52096 42 123 1.06E-82 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 Gene3D G3DSA:2.30.42.10 105 182 3.0E-19 T 29-03-2018 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 59 376 8.5E-106 T 29-03-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 Gene3D G3DSA:3.30.750.44 44 104 5.7E-17 T 29-03-2018 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 Pfam PF03572 Peptidase family S41 203 368 1.3E-57 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 SUPERFAMILY SSF50156 97 178 8.87E-20 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS24240 672c2f59b418df00fbbabc099caf4df0 436 Pfam PF13180 PDZ domain 105 177 1.5E-11 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 9 79 2.0E-35 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 Pfam PF00366 Ribosomal protein S17 13 79 8.8E-34 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 2.1E-13 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 2.1E-13 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 2.1E-13 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 9 79 1.7E-37 T 29-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 Gene3D G3DSA:2.40.50.140 8 85 8.4E-33 T 29-03-2018 Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 SUPERFAMILY SSF50249 9 85 3.47E-33 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS19530 808061b58de0b6b1035bd0d56932bf94 88 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 83 25.574 T 29-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS27220 112e05e5c76ec004afc939c5f044f09b 244 SUPERFAMILY SSF48008 87 217 1.7E-21 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS27220 112e05e5c76ec004afc939c5f044f09b 244 SUPERFAMILY SSF46785 16 83 2.38E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27220 112e05e5c76ec004afc939c5f044f09b 244 Gene3D G3DSA:1.20.120.530 83 221 7.2E-25 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS27220 112e05e5c76ec004afc939c5f044f09b 244 Gene3D G3DSA:1.10.10.10 3 82 4.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27220 112e05e5c76ec004afc939c5f044f09b 244 SMART SM00895 89 212 5.5E-16 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS27220 112e05e5c76ec004afc939c5f044f09b 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 71 2.6E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27220 112e05e5c76ec004afc939c5f044f09b 244 Pfam PF07729 FCD domain 89 210 7.9E-17 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS07830 bc4432473e49c6f9cd349f1529a8dd50 211 SMART SM00470 52 150 2.9E-6 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS07830 bc4432473e49c6f9cd349f1529a8dd50 211 Gene3D G3DSA:3.90.1530.10 43 154 3.2E-13 T 29-03-2018 Y880_RS07830 bc4432473e49c6f9cd349f1529a8dd50 211 Pfam PF02195 ParB-like nuclease domain 53 149 1.4E-12 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS07830 bc4432473e49c6f9cd349f1529a8dd50 211 SUPERFAMILY SSF110849 50 183 1.92E-18 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS19210 d490537d4193e94f9864aaa1358f7f06 442 SUPERFAMILY SSF103473 8 436 1.7E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS19210 d490537d4193e94f9864aaa1358f7f06 442 Pfam PF00083 Sugar (and other) transporter 48 438 6.6E-52 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS19210 d490537d4193e94f9864aaa1358f7f06 442 ProSitePatterns PS00217 Sugar transport proteins signature 2. 116 141 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS19210 d490537d4193e94f9864aaa1358f7f06 442 Gene3D G3DSA:1.20.1250.20 227 442 2.6E-27 T 29-03-2018 Y880_RS19210 d490537d4193e94f9864aaa1358f7f06 442 Gene3D G3DSA:1.20.1250.20 17 213 5.1E-32 T 29-03-2018 Y880_RS13260 8161027cbe1f72041dbf2b1510093ce1 70 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 28.689 T 29-03-2018 IPR007040 Ribosome modulation factor Y880_RS13260 8161027cbe1f72041dbf2b1510093ce1 70 Gene3D G3DSA:1.10.10.620 3 54 4.7E-23 T 29-03-2018 Y880_RS13260 8161027cbe1f72041dbf2b1510093ce1 70 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 50 2.0E-23 T 29-03-2018 IPR007040 Ribosome modulation factor Y880_RS13260 8161027cbe1f72041dbf2b1510093ce1 70 Pfam PF04957 Ribosome modulation factor 1 54 7.1E-27 T 29-03-2018 IPR007040 Ribosome modulation factor Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 Gene3D G3DSA:2.40.30.20 94 191 6.5E-35 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 Pfam PF00677 Lumazine binding domain 3 87 3.3E-20 T 29-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 Pfam PF00677 Lumazine binding domain 100 184 2.5E-24 T 29-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 PIRSF PIRSF000498 1 212 6.4E-77 T 29-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 Gene3D G3DSA:2.40.30.20 1 89 1.8E-25 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 SUPERFAMILY SSF63380 93 194 7.4E-32 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 SUPERFAMILY SSF63380 1 88 4.0E-25 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS18515 3c4c0239ad845e416fe3beeaedd18205 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 198 2.6E-65 T 29-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS09695 14fc0f50c9f9edeec7d7dd101fc0f37d 232 Gene3D G3DSA:3.90.850.10 6 232 1.8E-74 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS09695 14fc0f50c9f9edeec7d7dd101fc0f37d 232 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 27 231 4.3E-52 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS09695 14fc0f50c9f9edeec7d7dd101fc0f37d 232 SUPERFAMILY SSF56529 21 232 6.28E-68 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 2.6E-97 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 3.8E-65 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 3.8E-65 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 3.8E-65 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 629 642 3.8E-65 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 3.8E-65 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 3.8E-65 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 3.8E-65 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 636 5.0E-128 T 29-03-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 639 2.7E-238 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04370 67e62be752845e8f0a430f67eb3e2fa9 657 Pfam PF01578 Cytochrome C assembly protein 89 296 7.2E-56 T 29-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 SUPERFAMILY SSF52540 133 367 6.75E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 Gene3D G3DSA:3.40.50.300 375 810 1.9E-9 T 29-03-2018 Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 58 118 2.1E-6 T 29-03-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 SMART SM00487 169 364 6.9E-20 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 Pfam PF00271 Helicase conserved C-terminal domain 417 528 9.2E-5 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 Pfam PF08463 EcoEI R protein C-terminal 649 803 1.4E-26 T 29-03-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 SUPERFAMILY SSF52540 193 229 3.64E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 SUPERFAMILY SSF52540 279 288 3.64E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 SUPERFAMILY SSF52540 399 530 3.64E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 Pfam PF04851 Type III restriction enzyme, res subunit 171 329 3.9E-40 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Y880_RS11130 680d8b0dbdcc2cb77dbd7c268ac6dc7b 811 Gene3D G3DSA:3.40.50.300 144 351 2.7E-27 T 29-03-2018 Y880_RS20740 434a23db4024c3ca012d9bebc98c70b6 263 Pfam PF09906 Uncharacterized protein conserved in bacteria (DUF2135) 193 248 1.2E-21 T 29-03-2018 IPR019220 Domain of unknown function DUF2135 Y880_RS20740 434a23db4024c3ca012d9bebc98c70b6 263 Gene3D G3DSA:2.60.120.380 34 222 2.4E-4 T 29-03-2018 Y880_RS20740 434a23db4024c3ca012d9bebc98c70b6 263 PIRSF PIRSF012281 1 262 6.1E-131 T 29-03-2018 IPR012039 Uncharacterised conserved protein UCP012281 Y880_RS17855 43775f8f8330cda56877fa65dfe31d63 560 Gene3D G3DSA:3.40.50.980 46 186 2.4E-30 T 29-03-2018 Y880_RS17855 43775f8f8330cda56877fa65dfe31d63 560 Gene3D G3DSA:3.30.300.30 442 552 7.9E-24 T 29-03-2018 Y880_RS17855 43775f8f8330cda56877fa65dfe31d63 560 SUPERFAMILY SSF56801 29 546 3.01E-131 T 29-03-2018 Y880_RS17855 43775f8f8330cda56877fa65dfe31d63 560 Gene3D G3DSA:2.30.38.10 364 441 7.1E-18 T 29-03-2018 Y880_RS17855 43775f8f8330cda56877fa65dfe31d63 560 Gene3D G3DSA:3.40.50.980 187 346 4.7E-38 T 29-03-2018 Y880_RS17855 43775f8f8330cda56877fa65dfe31d63 560 Pfam PF13193 AMP-binding enzyme C-terminal domain 456 536 1.0E-18 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS17855 43775f8f8330cda56877fa65dfe31d63 560 Pfam PF00501 AMP-binding enzyme 34 447 3.6E-89 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 SUPERFAMILY SSF52980 942 1239 2.47E-71 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Gene3D G3DSA:1.10.3170.10 160 362 1.9E-47 T 29-03-2018 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 SUPERFAMILY SSF52540 123 207 1.39E-109 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 SUPERFAMILY SSF52540 555 802 1.39E-109 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 SUPERFAMILY SSF52540 839 863 1.39E-109 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 SUPERFAMILY SSF52540 5 82 1.39E-109 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 SUPERFAMILY SSF52540 343 519 1.39E-109 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Gene3D G3DSA:3.40.50.300 646 876 2.2E-24 T 29-03-2018 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Gene3D G3DSA:3.40.50.300 471 634 2.3E-17 T 29-03-2018 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 8 1238 21.72 T 29-03-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Pfam PF00580 UvrD/REP helicase N-terminal domain 17 461 2.1E-57 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Gene3D G3DSA:3.90.320.10 931 1245 2.0E-74 T 29-03-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1011 1214 1.1E-6 T 29-03-2018 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 10 1237 0.0 T 29-03-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Gene3D G3DSA:3.40.50.300 363 423 0.0011 T 29-03-2018 Y880_RS19695 1592e606cbfa630a0456b5c960e3719a 1245 Pfam PF13361 UvrD-like helicase C-terminal domain 722 859 1.8E-12 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 SUPERFAMILY SSF54980 370 420 4.24E-8 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 PIRSF PIRSF006809 5 422 2.7E-149 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 Hamap MF_00900 GTPase HflX [hflX]. 28 391 47.028 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 Pfam PF13167 GTP-binding GTPase N-terminal 28 113 2.6E-31 T 29-03-2018 IPR025121 GTPase HflX, N-terminal Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 11 361 4.2E-155 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 Pfam PF01926 50S ribosome-binding GTPase 201 319 2.7E-21 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 222 240 3.2E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 201 221 3.2E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 286 3.2E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 Gene3D G3DSA:3.40.50.300 168 232 1.1E-12 T 29-03-2018 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 Gene3D G3DSA:3.40.50.300 233 379 1.8E-17 T 29-03-2018 Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 Pfam PF16360 GTP-binding GTPase Middle Region 115 193 2.3E-29 T 29-03-2018 IPR032305 GTP-binding protein, middle domain Y880_RS23240 430dedb91f9794190d9d233a6d743ce1 433 SUPERFAMILY SSF52540 199 374 4.94E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 9 583 9.9E-286 T 29-03-2018 IPR011918 ABC transporter, ATP-binding/permease protein Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 Gene3D G3DSA:3.40.50.300 342 579 4.6E-73 T 29-03-2018 Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 SUPERFAMILY SSF90123 16 323 5.62E-72 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 SUPERFAMILY SSF52540 338 583 1.04E-87 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 SMART SM00382 372 574 1.4E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 Pfam PF00664 ABC transporter transmembrane region 30 297 4.2E-50 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 Gene3D G3DSA:1.20.1560.10 6 331 4.3E-68 T 29-03-2018 Y880_RS02440 eeaf0aa4a9d63a4fecb47d776cafdfa8 588 Pfam PF00005 ABC transporter 364 512 9.7E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS07085 48b8fe5caa9e0835e5404ce029dfa0ea 304 SUPERFAMILY SSF56281 1 304 1.36E-67 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS07085 48b8fe5caa9e0835e5404ce029dfa0ea 304 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 304 3.7E-146 T 29-03-2018 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 Y880_RS07085 48b8fe5caa9e0835e5404ce029dfa0ea 304 Pfam PF12706 Beta-lactamase superfamily domain 50 271 1.1E-48 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS07085 48b8fe5caa9e0835e5404ce029dfa0ea 304 Gene3D G3DSA:3.60.15.10 1 304 6.0E-43 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS07085 48b8fe5caa9e0835e5404ce029dfa0ea 304 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 304 177.541 T 29-03-2018 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 Pfam PF00106 short chain dehydrogenase 6 196 4.2E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.8E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.8E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.8E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.8E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.8E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 SUPERFAMILY SSF51735 1 240 9.34E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS12430 75aeb2c82f7c39bb7cab825c0fa0a062 274 Gene3D G3DSA:3.40.50.720 1 274 3.6E-55 T 29-03-2018 Y880_RS19350 f1ea783aa564f90a2f44158b14f9a056 414 SUPERFAMILY SSF103473 5 399 1.24E-30 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS19350 f1ea783aa564f90a2f44158b14f9a056 414 TIGRFAM TIGR02718 sider_RhtX_FptX: siderophore transporter, RhtX/FptX family 9 398 3.2E-208 T 29-03-2018 IPR014090 Siderophore transporter, RhtX/FptX family Y880_RS19350 f1ea783aa564f90a2f44158b14f9a056 414 Gene3D G3DSA:1.20.1250.20 210 412 3.6E-10 T 29-03-2018 Y880_RS19350 f1ea783aa564f90a2f44158b14f9a056 414 Pfam PF13000 Acetyl-coenzyme A transporter 1 14 93 1.6E-19 T 29-03-2018 IPR024371 Acetyl-coenzyme A transporter 1 GO:0008521|GO:0016021 Reactome: R-HSA-425397 Y880_RS19350 f1ea783aa564f90a2f44158b14f9a056 414 Gene3D G3DSA:1.20.1250.20 1 198 6.8E-16 T 29-03-2018 Y880_RS27775 ffc4a3dc51da6791dce08618c3b79e96 448 ProSitePatterns PS00216 Sugar transport proteins signature 1. 84 100 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS27775 ffc4a3dc51da6791dce08618c3b79e96 448 SUPERFAMILY SSF103473 14 438 2.22E-79 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS27775 ffc4a3dc51da6791dce08618c3b79e96 448 Gene3D G3DSA:1.20.1250.20 242 439 2.4E-20 T 29-03-2018 Y880_RS27775 ffc4a3dc51da6791dce08618c3b79e96 448 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 13 412 5.0E-152 T 29-03-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0005215|GO:0006810|GO:0016021 Y880_RS27775 ffc4a3dc51da6791dce08618c3b79e96 448 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS27775 ffc4a3dc51da6791dce08618c3b79e96 448 Gene3D G3DSA:1.20.1250.20 19 221 1.4E-39 T 29-03-2018 Y880_RS27775 ffc4a3dc51da6791dce08618c3b79e96 448 Pfam PF07690 Major Facilitator Superfamily 35 405 2.1E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS02830 640a4a51a4815bdfd19df0561bc1cd70 165 Pfam PF17283 SprT-like zinc ribbon domain 118 159 6.5E-10 T 29-03-2018 IPR035240 SprT-like, zinc ribbon domain Y880_RS02830 640a4a51a4815bdfd19df0561bc1cd70 165 Pfam PF10263 SprT-like family 10 111 3.6E-19 T 29-03-2018 IPR006640 SprT-like Y880_RS02830 640a4a51a4815bdfd19df0561bc1cd70 165 SMART SM00731 7 159 5.8E-61 T 29-03-2018 IPR006640 SprT-like Y880_RS25565 46aca41ac19714aa7861dad06dd986bf 355 Pfam PF03601 Conserved hypothetical protein 698 21 335 1.4E-115 T 29-03-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 Y880_RS25565 46aca41ac19714aa7861dad06dd986bf 355 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 19 350 4.5E-115 T 29-03-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 Y880_RS10190 be393d7688bba6c1e3dcb7fc3cc2140e 495 ProSitePatterns PS01130 SLC26A transporters signature. 42 63 - T 29-03-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 Y880_RS10190 be393d7688bba6c1e3dcb7fc3cc2140e 495 Pfam PF01740 STAS domain 397 485 2.7E-6 T 29-03-2018 IPR002645 STAS domain Y880_RS10190 be393d7688bba6c1e3dcb7fc3cc2140e 495 Gene3D G3DSA:3.30.750.24 390 484 1.8E-12 T 29-03-2018 IPR002645 STAS domain Y880_RS10190 be393d7688bba6c1e3dcb7fc3cc2140e 495 Pfam PF00916 Sulfate permease family 13 141 2.2E-27 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y880_RS10190 be393d7688bba6c1e3dcb7fc3cc2140e 495 Pfam PF00916 Sulfate permease family 166 346 2.1E-28 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y880_RS10190 be393d7688bba6c1e3dcb7fc3cc2140e 495 SUPERFAMILY SSF52091 400 485 2.94E-10 T 29-03-2018 IPR002645 STAS domain Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 SUPERFAMILY SSF52540 404 656 2.26E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 SUPERFAMILY SSF52540 167 403 7.1E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 SMART SM00487 188 372 7.9E-33 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 Gene3D G3DSA:3.40.50.300 477 640 5.5E-38 T 29-03-2018 Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 Pfam PF00271 Helicase conserved C-terminal domain 493 602 4.5E-17 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 SMART SM00490 522 602 2.3E-21 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 Gene3D G3DSA:3.40.50.10810 168 412 2.8E-54 T 29-03-2018 Y880_RS00615 9e38a65b4ebad6ca69e6509b458a7137 663 Pfam PF00176 SNF2 family N-terminal domain 210 475 1.1E-63 T 29-03-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 SMART SM00878 336 441 1.6E-63 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 SMART SM01209 114 292 0.007 T 29-03-2018 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 1.3E-38 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 SUPERFAMILY SSF56059 83 346 3.01E-69 T 29-03-2018 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 SUPERFAMILY SSF52440 1 113 1.87E-46 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.3E-44 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 Gene3D G3DSA:3.30.1490.20 124 210 1.3E-21 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 SUPERFAMILY SSF51246 331 444 3.92E-42 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 446 1.6E-228 T 29-03-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 Gene3D G3DSA:3.30.470.20 211 444 5.3E-96 T 29-03-2018 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 Gene3D G3DSA:3.40.50.20 1 123 3.4E-52 T 29-03-2018 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 5.3E-87 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22755 ede04ff4cf4dcbe747c14149e941e370 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 SUPERFAMILY SSF160996 190 336 2.09E-39 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 390 6.4E-127 T 29-03-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 Gene3D G3DSA:3.50.50.60 2 200 2.8E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.2E-7 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 360 367 1.2E-7 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.2E-7 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 SUPERFAMILY SSF51905 335 391 5.74E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 SUPERFAMILY SSF51905 4 188 5.74E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 Gene3D G3DSA:2.40.30.10 201 268 1.1E-24 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 Pfam PF03486 HI0933-like protein 5 390 1.1E-150 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.3E-5 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 3.3E-5 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 345 367 3.3E-5 T 29-03-2018 Y880_RS29495 4dd33bc6c23ed095219ca0e3ff805b99 392 Gene3D G3DSA:1.10.8.260 269 319 5.6E-11 T 29-03-2018 IPR023166 HI0933 insert-like domain Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Gene3D G3DSA:1.10.268.10 348 487 5.0E-43 T 29-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 12 745 0.0 T 29-03-2018 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 SUPERFAMILY SSF56719 35 487 1.29E-155 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Gene3D G3DSA:3.90.199.10 38 219 4.4E-74 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 SMART SM00434 15 465 2.8E-230 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Gene3D G3DSA:2.120.10.90 501 752 3.4E-42 T 29-03-2018 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 34.133 T 29-03-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 649 689 2.9E-5 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 602 643 0.0061 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 SUPERFAMILY SSF101904 501 750 5.49E-53 T 29-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 472 3.7E-132 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS23350 c369e5bad2c7b4f521b844ebbb3c9ae5 754 Gene3D G3DSA:3.30.1360.40 242 335 8.3E-23 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 Y880_RS18685 13ca665993f4064f991d81a4a290ce0b 461 Gene3D G3DSA:3.90.1150.10 18 175 5.8E-23 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS18685 13ca665993f4064f991d81a4a290ce0b 461 Gene3D G3DSA:3.90.1150.10 337 455 0.061 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS18685 13ca665993f4064f991d81a4a290ce0b 461 SUPERFAMILY SSF53383 45 455 1.24E-77 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS18685 13ca665993f4064f991d81a4a290ce0b 461 Gene3D G3DSA:3.40.640.10 187 336 3.6E-33 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS18685 13ca665993f4064f991d81a4a290ce0b 461 Pfam PF00202 Aminotransferase class-III 53 435 7.5E-41 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS06875 86caf551f5e7854793d6e50829d49ebc 495 Gene3D G3DSA:3.30.1490.20 302 356 8.1E-12 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS06875 86caf551f5e7854793d6e50829d49ebc 495 Gene3D G3DSA:3.30.470.20 357 470 2.3E-23 T 29-03-2018 Y880_RS06875 86caf551f5e7854793d6e50829d49ebc 495 SUPERFAMILY SSF56059 277 484 3.91E-39 T 29-03-2018 Y880_RS06875 86caf551f5e7854793d6e50829d49ebc 495 Gene3D G3DSA:3.40.50.20 178 301 1.6E-20 T 29-03-2018 Y880_RS06875 86caf551f5e7854793d6e50829d49ebc 495 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 27 177 6.7E-49 T 29-03-2018 IPR025839 RimK-like ATPgrasp N-terminal domain Y880_RS06875 86caf551f5e7854793d6e50829d49ebc 495 Pfam PF08443 RimK-like ATP-grasp domain 286 463 1.1E-8 T 29-03-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 Gene3D G3DSA:3.30.230.40 92 197 1.7E-32 T 29-03-2018 Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 158 170 - T 29-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 197 43.382 T 29-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 SUPERFAMILY SSF54211 89 181 3.49E-35 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 63 76 - T 29-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 SUPERFAMILY SSF54211 4 88 3.67E-34 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 33 176 4.4E-65 T 29-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y880_RS24290 34ea8fd09ec03b88f1e03687cdce9cea 197 Gene3D G3DSA:3.30.230.40 1 90 4.9E-36 T 29-03-2018 Y880_RS16700 7cdbd1444fd68b26a7ef9a663d43d6a0 539 Gene3D G3DSA:1.20.1250.20 230 538 2.3E-28 T 29-03-2018 Y880_RS16700 7cdbd1444fd68b26a7ef9a663d43d6a0 539 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 321 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS16700 7cdbd1444fd68b26a7ef9a663d43d6a0 539 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS16700 7cdbd1444fd68b26a7ef9a663d43d6a0 539 SUPERFAMILY SSF103473 442 535 1.92E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS16700 7cdbd1444fd68b26a7ef9a663d43d6a0 539 SUPERFAMILY SSF103473 19 340 1.92E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS16700 7cdbd1444fd68b26a7ef9a663d43d6a0 539 Pfam PF00083 Sugar (and other) transporter 25 333 7.6E-31 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS16700 7cdbd1444fd68b26a7ef9a663d43d6a0 539 Gene3D G3DSA:1.20.1250.20 17 229 1.1E-25 T 29-03-2018 Y880_RS24425 1e65914c30b94322be4e074e5c44ae77 331 PIRSF PIRSF006470 1 330 3.3E-133 T 29-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Y880_RS24425 1e65914c30b94322be4e074e5c44ae77 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 313 1.1E-113 T 29-03-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Y880_RS24425 1e65914c30b94322be4e074e5c44ae77 331 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 272 3.4E-82 T 29-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Y880_RS26185 3a65a7d41efec3c07f35217234d4d174 269 SMART SM00382 30 199 2.8E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26185 3a65a7d41efec3c07f35217234d4d174 269 Pfam PF00005 ABC transporter 21 149 1.1E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS26185 3a65a7d41efec3c07f35217234d4d174 269 Gene3D G3DSA:3.40.50.300 1 235 4.1E-52 T 29-03-2018 Y880_RS26185 3a65a7d41efec3c07f35217234d4d174 269 SUPERFAMILY SSF52540 4 214 2.5E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26185 3a65a7d41efec3c07f35217234d4d174 269 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 Gene3D G3DSA:3.30.365.10 433 587 4.0E-33 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 Gene3D G3DSA:3.90.1170.50 5 136 1.9E-30 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 Gene3D G3DSA:3.30.365.10 588 734 1.6E-42 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 SUPERFAMILY SSF56003 136 733 8.9E-159 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 Gene3D G3DSA:3.30.365.10 266 432 3.5E-31 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 151 675 1.9E-108 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 135 1.5E-16 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 Gene3D G3DSA:3.30.365.10 158 265 2.1E-27 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 SUPERFAMILY SSF54665 7 147 8.5E-33 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS06830 9a57927584b23fd2996d323c9b7ab0b3 735 SMART SM01008 22 136 2.3E-35 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS23265 f3f1fa3907e7e1c6119c4c44a142e773 155 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 11 138 3.7E-47 T 29-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Y880_RS23265 f3f1fa3907e7e1c6119c4c44a142e773 155 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 11 130 2.2E-39 T 29-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Y880_RS23265 f3f1fa3907e7e1c6119c4c44a142e773 155 SUPERFAMILY SSF52540 29 128 6.27E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23265 f3f1fa3907e7e1c6119c4c44a142e773 155 Gene3D G3DSA:3.40.50.300 1 153 3.0E-49 T 29-03-2018 Y880_RS17400 52833517acaa2089fe7b4724e694cad4 264 SUPERFAMILY SSF52540 1 233 8.48E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17400 52833517acaa2089fe7b4724e694cad4 264 SMART SM00382 31 225 8.5E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS17400 52833517acaa2089fe7b4724e694cad4 264 Pfam PF00005 ABC transporter 22 177 7.3E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS17400 52833517acaa2089fe7b4724e694cad4 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS17400 52833517acaa2089fe7b4724e694cad4 264 Gene3D G3DSA:3.40.50.300 1 241 9.0E-53 T 29-03-2018 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 SMART SM00260 335 485 2.0E-34 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Gene3D G3DSA:3.40.50.2300 509 639 3.2E-37 T 29-03-2018 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 206 342 8.7E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Pfam PF00072 Response regulator receiver domain 520 632 2.4E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Gene3D G3DSA:2.30.30.40 423 485 2.5E-18 T 29-03-2018 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 303 321 3.1E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 340 3.1E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 247 261 3.1E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 19 156 1.4E-4 T 29-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 SUPERFAMILY SSF55874 159 340 1.05E-36 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Gene3D G3DSA:3.30.565.10 157 346 4.1E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 SMART SM00448 518 631 2.9E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 SUPERFAMILY SSF52172 517 636 6.4E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 SUPERFAMILY SSF50341 342 481 2.62E-22 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Pfam PF01584 CheW-like domain 348 487 1.4E-23 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 SMART SM00387 202 343 1.3E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 Gene3D G3DSA:1.10.287.560 18 156 1.3E-11 T 29-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y880_RS28730 7988da890b63b2fbee46e27e9297aa73 639 SMART SM01231 18 157 1.3E-11 T 29-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y880_RS06035 e09c8ce7ff404370850209cb3630360c 155 Pfam PF06945 Protein of unknown function (DUF1289) 8 53 3.9E-15 T 29-03-2018 IPR010710 Protein of unknown function DUF1289 Y880_RS18395 b134aa69193204bf8e5603a8619f9980 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y880_RS18395 b134aa69193204bf8e5603a8619f9980 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.083 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y880_RS18395 b134aa69193204bf8e5603a8619f9980 175 SUPERFAMILY SSF50324 3 174 2.09E-68 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y880_RS18395 b134aa69193204bf8e5603a8619f9980 175 Gene3D G3DSA:3.90.80.10 1 175 1.1E-53 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y880_RS18395 b134aa69193204bf8e5603a8619f9980 175 Pfam PF00719 Inorganic pyrophosphatase 18 172 2.5E-54 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y880_RS23035 63f8d3b36ff3d21cc80398e2792d456a 351 Gene3D G3DSA:2.102.10.10 2 106 3.0E-26 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS23035 63f8d3b36ff3d21cc80398e2792d456a 351 SUPERFAMILY SSF50022 3 110 7.46E-32 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS23035 63f8d3b36ff3d21cc80398e2792d456a 351 Gene3D G3DSA:3.90.380.10 107 346 1.5E-46 T 29-03-2018 Y880_RS23035 63f8d3b36ff3d21cc80398e2792d456a 351 Pfam PF00355 Rieske [2Fe-2S] domain 7 86 2.2E-17 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS23035 63f8d3b36ff3d21cc80398e2792d456a 351 SUPERFAMILY SSF55961 117 343 1.02E-57 T 29-03-2018 Y880_RS15340 6b091e163e42458592eb792cc8071b4b 323 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 32 313 8.7E-76 T 29-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y880_RS15340 6b091e163e42458592eb792cc8071b4b 323 SUPERFAMILY SSF53850 30 256 2.06E-54 T 29-03-2018 Y880_RS15340 6b091e163e42458592eb792cc8071b4b 323 SMART SM00062 31 247 6.2E-31 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS15340 6b091e163e42458592eb792cc8071b4b 323 Pfam PF09084 NMT1/THI5 like 56 250 1.8E-16 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS15340 6b091e163e42458592eb792cc8071b4b 323 Gene3D G3DSA:3.40.190.10 27 133 1.3E-16 T 29-03-2018 Y880_RS15340 6b091e163e42458592eb792cc8071b4b 323 Gene3D G3DSA:3.40.190.10 134 315 1.9E-35 T 29-03-2018 Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 Pfam PF08362 YcdC-like protein, C-terminal region 65 204 1.4E-54 T 29-03-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 2.3E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.4E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.4E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 SUPERFAMILY SSF46689 7 73 1.59E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 Gene3D G3DSA:1.10.10.60 4 60 7.8E-16 T 29-03-2018 Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 SUPERFAMILY SSF48498 81 204 9.64E-37 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS28850 e128ea8255adc36c8fb41e43ba72e88a 206 Gene3D G3DSA:1.10.357.10 61 205 1.1E-16 T 29-03-2018 Y880_RS05955 52470094570ee1232651e4d111f75cb0 332 Pfam PF01544 CorA-like Mg2+ transporter protein 41 328 1.9E-56 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y880_RS05955 52470094570ee1232651e4d111f75cb0 332 SUPERFAMILY SSF144083 267 329 5.75E-16 T 29-03-2018 Y880_RS05955 52470094570ee1232651e4d111f75cb0 332 SUPERFAMILY SSF143865 9 260 2.88E-49 T 29-03-2018 Y880_RS05955 52470094570ee1232651e4d111f75cb0 332 Gene3D G3DSA:1.20.58.340 265 332 1.4E-19 T 29-03-2018 Y880_RS05955 52470094570ee1232651e4d111f75cb0 332 Gene3D G3DSA:3.30.460.20 2 141 1.7E-14 T 29-03-2018 Y880_RS05955 52470094570ee1232651e4d111f75cb0 332 Gene3D G3DSA:1.20.58.340 142 264 4.8E-18 T 29-03-2018 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 SUPERFAMILY SSF53067 101 313 4.09E-43 T 29-03-2018 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 1.1E-117 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 Gene3D G3DSA:3.30.420.40 145 293 3.7E-17 T 29-03-2018 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 5.8E-133 T 29-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 SUPERFAMILY SSF53067 3 122 2.98E-32 T 29-03-2018 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.4E-51 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.4E-51 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.4E-51 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 1.4E-51 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.4E-51 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.4E-51 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 62.348 T 29-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 Pfam PF00814 Glycoprotease family 24 311 9.1E-101 T 29-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS29610 45aa42e5c761087b65ea25975b709c03 341 Gene3D G3DSA:3.30.420.40 1 144 3.6E-43 T 29-03-2018 Y880_RS04140 2dfc1cc7b7ee806a38642a606442c95d 237 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 74 181 1.7E-17 T 29-03-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted Y880_RS04140 2dfc1cc7b7ee806a38642a606442c95d 237 SUPERFAMILY SSF54001 71 137 8.83E-7 T 29-03-2018 Y880_RS01115 d1525cebf736e9cd0a293d44ab32c61b 118 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 19 110 2.8E-28 T 29-03-2018 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Y880_RS01115 d1525cebf736e9cd0a293d44ab32c61b 118 Gene3D G3DSA:3.30.1360.20 10 114 5.4E-29 T 29-03-2018 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Y880_RS01115 d1525cebf736e9cd0a293d44ab32c61b 118 SUPERFAMILY SSF55248 16 112 4.32E-33 T 29-03-2018 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Y880_RS01115 d1525cebf736e9cd0a293d44ab32c61b 118 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 111 22.011 T 29-03-2018 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Y880_RS18705 fbcc274e61d8ec89afce90e311d92807 170 Pfam PF01613 Flavin reductase like domain 15 163 3.7E-28 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 Y880_RS18705 fbcc274e61d8ec89afce90e311d92807 170 SUPERFAMILY SSF50475 11 163 2.21E-47 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS18705 fbcc274e61d8ec89afce90e311d92807 170 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 11 163 4.0E-72 T 29-03-2018 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 KEGG: 00740+1.5.1.36 Y880_RS18705 fbcc274e61d8ec89afce90e311d92807 170 SMART SM00903 15 162 1.0E-52 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 Y880_RS18705 fbcc274e61d8ec89afce90e311d92807 170 Gene3D G3DSA:2.30.110.10 4 163 2.2E-35 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS10260 d962daaace5854efbe24890f872285d2 200 Gene3D G3DSA:3.40.109.10 4 198 6.7E-28 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS10260 d962daaace5854efbe24890f872285d2 200 SUPERFAMILY SSF55469 5 199 1.57E-73 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS10260 d962daaace5854efbe24890f872285d2 200 Pfam PF00881 Nitroreductase family 9 177 1.9E-20 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y880_RS03520 0ea909f1ee7353eac7c522805bd1b83d 170 Gene3D G3DSA:2.60.40.10 37 160 2.7E-7 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS03520 0ea909f1ee7353eac7c522805bd1b83d 170 SUPERFAMILY SSF117074 14 169 2.35E-35 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 Gene3D G3DSA:3.50.50.60 271 327 6.5E-10 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 446 1.9E-35 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 414 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 441 1.8E-68 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 3.2E-69 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 5.3E-30 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 5.3E-30 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 5.3E-30 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.3E-30 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 5.3E-30 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 SUPERFAMILY SSF55424 335 447 3.95E-36 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 PIRSF PIRSF000350 1 444 1.5E-86 T 29-03-2018 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 Gene3D G3DSA:3.50.50.60 149 270 7.7E-28 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 Gene3D G3DSA:3.30.390.30 331 449 6.7E-39 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 SUPERFAMILY SSF51905 1 358 8.37E-60 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07285 5af6598b5853953722edf32a0d914a5c 451 Gene3D G3DSA:3.50.50.60 2 148 7.9E-32 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 26 210 3.4E-44 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 SMART SM00342 253 335 1.5E-16 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 SUPERFAMILY SSF46689 288 339 2.06E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 Gene3D G3DSA:1.10.10.60 290 344 2.8E-16 T 29-03-2018 Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 Pfam PF12833 Helix-turn-helix domain 259 337 1.0E-16 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 Gene3D G3DSA:1.10.10.10 217 276 0.17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 304 319 6.9E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS07660 2042bf5177e43319370a4a2117bd497d 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 319 335 6.9E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS21750 a5e51e71cd9ba5504625d8f441085cb3 333 Gene3D G3DSA:1.10.443.10 161 324 8.8E-36 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS21750 a5e51e71cd9ba5504625d8f441085cb3 333 Pfam PF00589 Phage integrase family 159 308 1.5E-19 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS21750 a5e51e71cd9ba5504625d8f441085cb3 333 Gene3D G3DSA:1.10.150.130 12 160 8.1E-6 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal Y880_RS21750 a5e51e71cd9ba5504625d8f441085cb3 333 SUPERFAMILY SSF56349 57 316 8.24E-50 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y880_RS23685 5e55a99b91e49f90864fa090b336f7e4 150 SUPERFAMILY SSF54637 11 145 6.66E-27 T 29-03-2018 IPR029069 HotDog domain Y880_RS23685 5e55a99b91e49f90864fa090b336f7e4 150 Pfam PF14539 Domain of unknown function (DUF4442) 13 138 1.2E-19 T 29-03-2018 IPR027961 Protein of unknown function DUF4442 Y880_RS23685 5e55a99b91e49f90864fa090b336f7e4 150 Gene3D G3DSA:3.10.129.10 2 147 2.2E-23 T 29-03-2018 Y880_RS03220 6d1a8e380ea278041780f1bbe9034301 55 Pfam PF08279 HTH domain 6 53 2.3E-13 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 Y880_RS03220 6d1a8e380ea278041780f1bbe9034301 55 Gene3D G3DSA:1.10.10.10 1 55 9.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03220 6d1a8e380ea278041780f1bbe9034301 55 SUPERFAMILY SSF46785 3 51 2.73E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12225 ecd79be54888e2ab8cb97c41979b4de4 376 PIRSF PIRSF015557 1 376 1.5E-170 T 29-03-2018 IPR016633 Uncharacterised conserved protein UCP015557 Y880_RS12225 ecd79be54888e2ab8cb97c41979b4de4 376 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 4 372 1.5E-161 T 29-03-2018 IPR016633 Uncharacterised conserved protein UCP015557 Y880_RS12225 ecd79be54888e2ab8cb97c41979b4de4 376 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 4 372 3.5E-152 T 29-03-2018 IPR016633 Uncharacterised conserved protein UCP015557 Y880_RS12030 c1399d6f45117a9c768492e7d37a8a29 103 SMART SM00530 28 83 7.1E-9 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS12030 c1399d6f45117a9c768492e7d37a8a29 103 SUPERFAMILY SSF47413 24 90 6.76E-15 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS12030 c1399d6f45117a9c768492e7d37a8a29 103 Pfam PF01381 Helix-turn-helix 29 81 2.4E-10 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS12030 c1399d6f45117a9c768492e7d37a8a29 103 Gene3D G3DSA:1.10.260.40 15 98 1.0E-14 T 29-03-2018 Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 SUPERFAMILY SSF52283 2 134 2.02E-38 T 29-03-2018 Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 Gene3D G3DSA:3.40.50.720 117 300 5.1E-57 T 29-03-2018 Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 2.3E-60 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 327 3.9E-32 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 SUPERFAMILY SSF51735 102 298 1.84E-60 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 Gene3D G3DSA:3.40.50.720 1 116 1.3E-31 T 29-03-2018 Y880_RS01430 730f253eba41cfe5a5181cde90e7dd27 329 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Y880_RS25335 d51a566d4cadeb0651ec50112bb2f6c4 283 Gene3D G3DSA:3.40.50.720 2 282 1.4E-32 T 29-03-2018 Y880_RS25335 d51a566d4cadeb0651ec50112bb2f6c4 283 SUPERFAMILY SSF51735 1 279 2.56E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25335 d51a566d4cadeb0651ec50112bb2f6c4 283 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 164 7.1E-8 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS01495 db2a992a93262d1bc98b5b3f19733a41 108 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 6 90 4.3E-27 T 29-03-2018 IPR009778 Modulator of Rho-dependent transcription termination Y880_RS01495 db2a992a93262d1bc98b5b3f19733a41 108 SUPERFAMILY SSF101744 1 90 1.57E-20 T 29-03-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 Y880_RS01495 db2a992a93262d1bc98b5b3f19733a41 108 Gene3D G3DSA:2.30.30.400 7 90 6.5E-23 T 29-03-2018 Y880_RS29080 5c19085198b925bdaff593a60d4ab21e 158 Pfam PF00583 Acetyltransferase (GNAT) family 41 136 3.2E-19 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS29080 5c19085198b925bdaff593a60d4ab21e 158 Gene3D G3DSA:3.40.630.30 1 158 3.2E-36 T 29-03-2018 Y880_RS29080 5c19085198b925bdaff593a60d4ab21e 158 SUPERFAMILY SSF55729 3 152 5.57E-38 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS21860 e2a8ef443277e3c2811f12804e369e0c 150 SUPERFAMILY SSF55729 5 148 6.92E-35 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS21860 e2a8ef443277e3c2811f12804e369e0c 150 Pfam PF00583 Acetyltransferase (GNAT) family 29 122 2.9E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS21860 e2a8ef443277e3c2811f12804e369e0c 150 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 14 144 2.5E-48 T 29-03-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 Y880_RS21860 e2a8ef443277e3c2811f12804e369e0c 150 Gene3D G3DSA:3.40.630.30 4 150 1.7E-35 T 29-03-2018 Y880_RS01375 ba46943f1446c012c8b63a5893e18252 634 Pfam PF02705 K+ potassium transporter 24 556 3.6E-205 T 29-03-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 Y880_RS01375 ba46943f1446c012c8b63a5893e18252 634 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 15 634 34.238 T 29-03-2018 IPR023051 Potassium uptake protein, low affinity, Kup Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 36.599 T 29-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 Gene3D G3DSA:3.40.50.300 1 48 1.5E-4 T 29-03-2018 Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 Pfam PF00625 Guanylate kinase 4 182 3.6E-54 T 29-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 SUPERFAMILY SSF52540 3 186 1.63E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 Gene3D G3DSA:3.30.63.10 49 80 6.6E-26 T 29-03-2018 Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 ProSitePatterns PS00856 Guanylate kinase-like signature. 37 54 - T 29-03-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 SMART SM00072 2 184 9.5E-62 T 29-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.0E-74 T 29-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Y880_RS25300 7baf81fa66da5d662e0023e48a6072b6 203 Gene3D G3DSA:3.40.50.300 81 184 7.3E-30 T 29-03-2018 Y880_RS10270 5a82895a87e46224105514400282a2fd 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 2.8E-12 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS10270 5a82895a87e46224105514400282a2fd 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 2.8E-12 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS10270 5a82895a87e46224105514400282a2fd 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 2.8E-12 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS10270 5a82895a87e46224105514400282a2fd 145 SUPERFAMILY SSF54909 64 137 3.75E-15 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS10270 5a82895a87e46224105514400282a2fd 145 Pfam PF01037 Lrp/AsnC ligand binding domain 68 134 1.1E-15 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS10270 5a82895a87e46224105514400282a2fd 145 SUPERFAMILY SSF46785 2 62 8.1E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10270 5a82895a87e46224105514400282a2fd 145 Gene3D G3DSA:3.30.70.920 52 140 2.0E-18 T 29-03-2018 Y880_RS10270 5a82895a87e46224105514400282a2fd 145 Gene3D G3DSA:1.10.10.10 2 51 9.1E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10270 5a82895a87e46224105514400282a2fd 145 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 49 8.9E-14 T 29-03-2018 Y880_RS10270 5a82895a87e46224105514400282a2fd 145 SMART SM00344 2 108 8.0E-28 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS01120 015b627f018491587b501660e9e43440 262 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 15 229 5.6E-47 T 29-03-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y880_RS01120 015b627f018491587b501660e9e43440 262 Gene3D G3DSA:1.10.800.10 1 249 1.6E-94 T 29-03-2018 IPR001273 Aromatic amino acid hydroxylase GO:0004497|GO:0005506|GO:0009072|GO:0055114 Y880_RS01120 015b627f018491587b501660e9e43440 262 SUPERFAMILY SSF56534 3 248 1.09E-100 T 29-03-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y880_RS01120 015b627f018491587b501660e9e43440 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 74 96 3.3E-9 T 29-03-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y880_RS01120 015b627f018491587b501660e9e43440 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 138 157 3.3E-9 T 29-03-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y880_RS01120 015b627f018491587b501660e9e43440 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 209 228 3.3E-9 T 29-03-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y880_RS01120 015b627f018491587b501660e9e43440 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 178 196 3.3E-9 T 29-03-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y880_RS01120 015b627f018491587b501660e9e43440 262 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 9 254 2.1E-134 T 29-03-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 Y880_RS01120 015b627f018491587b501660e9e43440 262 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 117 128 - T 29-03-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 Y880_RS04250 dfe8f2191185e18b44ff649561c51b98 124 SUPERFAMILY SSF52172 1 121 5.41E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS04250 dfe8f2191185e18b44ff649561c51b98 124 Gene3D G3DSA:3.40.50.2300 1 123 6.5E-37 T 29-03-2018 Y880_RS04250 dfe8f2191185e18b44ff649561c51b98 124 Pfam PF00072 Response regulator receiver domain 3 116 3.2E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS04250 dfe8f2191185e18b44ff649561c51b98 124 SMART SM00448 1 115 4.9E-35 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS05815 bcd69a6bf8aac03bf6f09a0210150c26 229 SUPERFAMILY SSF52096 3 224 5.77E-45 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS05815 bcd69a6bf8aac03bf6f09a0210150c26 229 Gene3D G3DSA:3.90.226.10 1 229 1.0E-40 T 29-03-2018 Y880_RS05815 bcd69a6bf8aac03bf6f09a0210150c26 229 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 226 1.3E-31 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS20625 abab9a30ba34f26173b432a6c91e9da5 154 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 3 149 1.5E-60 T 29-03-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 Y880_RS20625 abab9a30ba34f26173b432a6c91e9da5 154 SUPERFAMILY SSF55804 1 147 1.09E-41 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Y880_RS20625 abab9a30ba34f26173b432a6c91e9da5 154 Gene3D G3DSA:3.40.930.10 2 151 2.3E-40 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Y880_RS20625 abab9a30ba34f26173b432a6c91e9da5 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 147 5.9E-35 T 29-03-2018 IPR002178 PTS EIIA type-2 domain Y880_RS07220 10e3e3a07d2e95e1cd2e86af4086f9aa 265 SUPERFAMILY SSF52096 3 263 1.16E-73 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS07220 10e3e3a07d2e95e1cd2e86af4086f9aa 265 Gene3D G3DSA:1.10.12.10 221 265 1.3E-12 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS07220 10e3e3a07d2e95e1cd2e86af4086f9aa 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 263 1.1E-53 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS07220 10e3e3a07d2e95e1cd2e86af4086f9aa 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 105 125 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Y880_RS07220 10e3e3a07d2e95e1cd2e86af4086f9aa 265 Gene3D G3DSA:3.90.226.10 6 220 3.9E-54 T 29-03-2018 Y880_RS27845 c0d6c5481cb24099de3640e5dd9397ce 148 Pfam PF13508 Acetyltransferase (GNAT) domain 53 126 3.7E-15 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS27845 c0d6c5481cb24099de3640e5dd9397ce 148 SUPERFAMILY SSF55729 5 145 9.22E-26 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS27845 c0d6c5481cb24099de3640e5dd9397ce 148 Gene3D G3DSA:3.40.630.30 5 148 2.4E-27 T 29-03-2018 Y880_RS07620 c71972f16272493d413deaaed5e34c47 282 Gene3D G3DSA:3.40.50.150 2 213 1.2E-26 T 29-03-2018 Y880_RS07620 c71972f16272493d413deaaed5e34c47 282 SUPERFAMILY SSF53335 12 191 6.02E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS07620 c71972f16272493d413deaaed5e34c47 282 Pfam PF13649 Methyltransferase domain 41 136 1.0E-13 T 29-03-2018 Y880_RS16680 ad8c9ef567bd7e7928137d91bee72126 229 Gene3D G3DSA:2.40.50.180 99 169 1.7E-10 T 29-03-2018 Y880_RS16680 ad8c9ef567bd7e7928137d91bee72126 229 Pfam PF01584 CheW-like domain 83 223 1.8E-21 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS16680 ad8c9ef567bd7e7928137d91bee72126 229 Gene3D G3DSA:2.30.30.40 170 215 2.9E-5 T 29-03-2018 Y880_RS16680 ad8c9ef567bd7e7928137d91bee72126 229 SMART SM00260 78 221 3.3E-5 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS16680 ad8c9ef567bd7e7928137d91bee72126 229 SUPERFAMILY SSF50341 80 224 1.16E-21 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS07765 5af3cfe276f0b7468a1faecb6a30f0c2 265 SUPERFAMILY SSF160920 10 259 3.01E-101 T 29-03-2018 Y880_RS07765 5af3cfe276f0b7468a1faecb6a30f0c2 265 Hamap MF_01830 UPF0317 protein . 13 264 49.731 T 29-03-2018 IPR016938 Uncharacterised protein family UPF0317 Y880_RS07765 5af3cfe276f0b7468a1faecb6a30f0c2 265 PIRSF PIRSF029755 3 265 1.1E-114 T 29-03-2018 IPR016938 Uncharacterised protein family UPF0317 Y880_RS07765 5af3cfe276f0b7468a1faecb6a30f0c2 265 Pfam PF07286 Protein of unknown function (DUF1445) 117 259 3.4E-59 T 29-03-2018 IPR009906 D-glutamate cyclase Y880_RS07765 5af3cfe276f0b7468a1faecb6a30f0c2 265 Gene3D G3DSA:3.40.1640.10 3 168 4.8E-58 T 29-03-2018 Y880_RS07765 5af3cfe276f0b7468a1faecb6a30f0c2 265 Gene3D G3DSA:3.40.1640.10 205 264 3.3E-6 T 29-03-2018 Y880_RS12410 dac1d76c08a73528bc74b4412bebbad7 538 Gene3D G3DSA:3.90.226.10 9 273 1.5E-54 T 29-03-2018 Y880_RS12410 dac1d76c08a73528bc74b4412bebbad7 538 SUPERFAMILY SSF52096 277 535 2.13E-74 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS12410 dac1d76c08a73528bc74b4412bebbad7 538 Gene3D G3DSA:3.90.226.10 274 532 1.4E-58 T 29-03-2018 Y880_RS12410 dac1d76c08a73528bc74b4412bebbad7 538 Pfam PF01039 Carboxyl transferase domain 49 514 1.8E-115 T 29-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 Y880_RS12410 dac1d76c08a73528bc74b4412bebbad7 538 SUPERFAMILY SSF52096 33 269 2.85E-58 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 239 307 7.3E-11 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 41 53 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 77 91 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 138 147 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 189 197 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 113 132 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 31 41 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 91 105 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 53 67 1.7E-46 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 Gene3D G3DSA:3.10.20.30 219 318 1.8E-22 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 SUPERFAMILY SSF52343 99 223 2.1E-27 T 29-03-2018 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 267 275 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 SUPERFAMILY SSF54292 212 316 1.11E-28 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 SUPERFAMILY SSF63380 4 101 2.84E-24 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 Gene3D G3DSA:2.40.30.10 2 101 9.0E-13 T 29-03-2018 Y880_RS15605 57b0b4fc7e636f43a929e654ddedf67b 318 Gene3D G3DSA:3.40.50.80 104 218 9.7E-22 T 29-03-2018 Y880_RS11630 139066086d0bfd08929ec679d829cec1 241 SUPERFAMILY SSF51206 17 149 3.14E-20 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like Y880_RS11630 139066086d0bfd08929ec679d829cec1 241 Pfam PF13545 Crp-like helix-turn-helix domain 160 229 3.8E-13 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS11630 139066086d0bfd08929ec679d829cec1 241 Gene3D G3DSA:2.60.120.10 12 154 5.9E-19 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS11630 139066086d0bfd08929ec679d829cec1 241 SUPERFAMILY SSF46785 157 231 3.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11630 139066086d0bfd08929ec679d829cec1 241 Pfam PF00027 Cyclic nucleotide-binding domain 41 126 5.9E-11 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS11630 139066086d0bfd08929ec679d829cec1 241 SMART SM00100 22 140 4.0E-8 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS11630 139066086d0bfd08929ec679d829cec1 241 Gene3D G3DSA:1.10.10.10 155 232 6.4E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 SUPERFAMILY SSF56935 124 771 6.99E-111 T 29-03-2018 Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 Pfam PF00593 TonB dependent receptor 352 768 2.9E-42 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 SMART SM00965 32 83 2.8E-14 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 754 771 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 Pfam PF07715 TonB-dependent Receptor Plug Domain 129 227 1.8E-16 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 Gene3D G3DSA:2.40.170.20 245 771 2.4E-69 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 131 771 6.3E-111 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 Gene3D G3DSA:2.170.130.10 83 244 2.3E-21 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS06710 3c41805defe57aaa02fbea1ff6a4668d 771 Pfam PF07660 Secretin and TonB N terminus short domain 32 82 3.2E-7 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 Gene3D G3DSA:3.40.190.10 194 281 1.6E-11 T 29-03-2018 Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 Gene3D G3DSA:1.10.10.10 14 105 4.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 SUPERFAMILY SSF53850 105 312 1.76E-28 T 29-03-2018 Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 55 7.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 7.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 7.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 Pfam PF03466 LysR substrate binding domain 103 308 4.6E-34 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 SUPERFAMILY SSF46785 16 127 3.65E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 Gene3D G3DSA:3.40.190.10 106 193 5.5E-16 T 29-03-2018 Y880_RS23985 3d7c3a052789b3bfd16e99fc3ed8f541 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 19 77 2.9E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 Gene3D G3DSA:1.20.140.10 218 385 1.6E-50 T 29-03-2018 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 SUPERFAMILY SSF47203 229 377 3.22E-44 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 118 5.7E-33 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 PIRSF PIRSF016578 3 82 10.0 T 29-03-2018 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 PIRSF PIRSF016578 125 362 4.9E-11 T 29-03-2018 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 Gene3D G3DSA:2.40.110.10 121 217 2.9E-40 T 29-03-2018 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 1.5E-24 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 6.1E-43 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 Gene3D G3DSA:1.10.540.10 1 120 3.2E-37 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS12415 d915cc951a8e7aa3aac72b61548620ff 386 SUPERFAMILY SSF56645 2 241 2.62E-82 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS16940 e930c2018e982e423413482d9f607846 184 Pfam PF00293 NUDIX domain 44 141 7.7E-15 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS16940 e930c2018e982e423413482d9f607846 184 Pfam PF14803 Nudix N-terminal 2 35 3.1E-17 T 29-03-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 Y880_RS16940 e930c2018e982e423413482d9f607846 184 Gene3D G3DSA:3.90.79.10 36 183 1.3E-30 T 29-03-2018 Y880_RS16940 e930c2018e982e423413482d9f607846 184 SUPERFAMILY SSF55811 2 165 1.14E-41 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS16940 e930c2018e982e423413482d9f607846 184 ProSitePatterns PS00893 Nudix box signature. 70 91 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS16940 e930c2018e982e423413482d9f607846 184 Gene3D G3DSA:2.20.70.10 1 34 1.8E-16 T 29-03-2018 Y880_RS28675 a3694ff9795a41c914356700453ce477 170 SUPERFAMILY SSF53271 8 155 7.53E-35 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS28675 a3694ff9795a41c914356700453ce477 170 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 1 168 28.031 T 29-03-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Y880_RS28675 a3694ff9795a41c914356700453ce477 170 Pfam PF00156 Phosphoribosyl transferase domain 20 136 1.1E-16 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y880_RS28675 a3694ff9795a41c914356700453ce477 170 Gene3D G3DSA:3.40.50.2020 1 155 5.5E-23 T 29-03-2018 Y880_RS16315 9d967f9019d28f375d7fc8f41695c385 82 Pfam PF01206 Sulfurtransferase TusA 11 77 2.8E-18 T 29-03-2018 IPR001455 TusA-like domain Y880_RS16315 9d967f9019d28f375d7fc8f41695c385 82 SUPERFAMILY SSF64307 5 77 3.79E-20 T 29-03-2018 IPR001455 TusA-like domain Y880_RS16315 9d967f9019d28f375d7fc8f41695c385 82 Gene3D G3DSA:3.30.110.40 1 78 4.4E-18 T 29-03-2018 IPR001455 TusA-like domain Y880_RS20605 470b791a202dc896224abba07a009687 175 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 24 171 1.9E-46 T 29-03-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Y880_RS20605 470b791a202dc896224abba07a009687 175 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 2 171 23.831 T 29-03-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Y880_RS20605 470b791a202dc896224abba07a009687 175 Gene3D G3DSA:2.60.450.10 24 161 5.5E-24 T 29-03-2018 Y880_RS20605 470b791a202dc896224abba07a009687 175 Pfam PF03968 OstA-like protein 35 145 3.7E-26 T 29-03-2018 IPR005653 Organic solvent tolerance-like, N-terminal Y880_RS09880 10f632c80dfb821b77e646e3ce74d858 96 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 1.0E-27 T 29-03-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y880_RS09880 10f632c80dfb821b77e646e3ce74d858 96 SUPERFAMILY SSF54909 1 95 3.22E-35 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS09880 10f632c80dfb821b77e646e3ce74d858 96 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 1.2E-44 T 29-03-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y880_RS09880 10f632c80dfb821b77e646e3ce74d858 96 Pfam PF02426 Muconolactone delta-isomerase 1 90 7.6E-38 T 29-03-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y880_RS09880 10f632c80dfb821b77e646e3ce74d858 96 PIRSF PIRSF001486 1 94 2.0E-44 T 29-03-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y880_RS15025 f82272a2c3e4523eb0811a44e8988082 278 Pfam PF00005 ABC transporter 21 181 6.7E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS15025 f82272a2c3e4523eb0811a44e8988082 278 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS15025 f82272a2c3e4523eb0811a44e8988082 278 SUPERFAMILY SSF52540 4 242 1.66E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15025 f82272a2c3e4523eb0811a44e8988082 278 Gene3D G3DSA:3.40.50.300 1 270 7.3E-60 T 29-03-2018 Y880_RS15025 f82272a2c3e4523eb0811a44e8988082 278 SMART SM00382 29 238 9.6E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS15025 f82272a2c3e4523eb0811a44e8988082 278 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 4 250 1.2E-90 T 29-03-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 Gene3D G3DSA:3.40.190.10 89 179 6.6E-22 T 29-03-2018 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.7E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 Pfam PF03466 LysR substrate binding domain 88 293 1.2E-41 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 SUPERFAMILY SSF53850 90 295 5.16E-38 T 29-03-2018 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 Gene3D G3DSA:3.40.190.10 180 268 2.1E-27 T 29-03-2018 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 SUPERFAMILY SSF46785 3 86 1.33E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06260 c84962243b3db8a604a5da388cd4c462 301 Gene3D G3DSA:1.10.10.10 1 83 1.3E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14015 b3eb065f52ce7b25dd72c8b2d9a91679 250 Gene3D G3DSA:1.10.10.580 162 229 2.3E-14 T 29-03-2018 Y880_RS14015 b3eb065f52ce7b25dd72c8b2d9a91679 250 Hamap MF_01805 Segregation and condensation protein A [scpA]. 1 231 22.374 T 29-03-2018 IPR003768 Segregation and condensation protein A Y880_RS14015 b3eb065f52ce7b25dd72c8b2d9a91679 250 Pfam PF02616 Segregation and condensation protein ScpA 160 228 5.5E-8 T 29-03-2018 IPR003768 Segregation and condensation protein A Y880_RS14015 b3eb065f52ce7b25dd72c8b2d9a91679 250 Pfam PF02616 Segregation and condensation protein ScpA 18 109 5.6E-22 T 29-03-2018 IPR003768 Segregation and condensation protein A Y880_RS22815 28075beb63f70827ae29ba4f432d1fa9 359 Gene3D G3DSA:1.10.3470.10 44 357 2.1E-28 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS22815 28075beb63f70827ae29ba4f432d1fa9 359 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 44 352 8.3E-134 T 29-03-2018 IPR017778 ABC transporter, urea, permease protein, UrtC Y880_RS22815 28075beb63f70827ae29ba4f432d1fa9 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 341 8.7E-42 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS03090 05f0d13bc93b32fad9c86ce6a39f6ce2 265 Gene3D G3DSA:1.10.12.10 223 265 2.0E-14 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS03090 05f0d13bc93b32fad9c86ce6a39f6ce2 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 264 5.3E-34 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS03090 05f0d13bc93b32fad9c86ce6a39f6ce2 265 Gene3D G3DSA:3.90.226.10 10 222 4.2E-44 T 29-03-2018 Y880_RS03090 05f0d13bc93b32fad9c86ce6a39f6ce2 265 SUPERFAMILY SSF52096 10 265 4.35E-61 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS15495 6f406665b324d8c41983b2acb767056a 286 SUPERFAMILY SSF103481 35 131 3.53E-9 T 29-03-2018 Y880_RS15495 6f406665b324d8c41983b2acb767056a 286 SUPERFAMILY SSF103481 176 282 1.7E-9 T 29-03-2018 Y880_RS15495 6f406665b324d8c41983b2acb767056a 286 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 274 5.5E-90 T 29-03-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 Y880_RS15495 6f406665b324d8c41983b2acb767056a 286 Pfam PF00892 EamA-like transporter family 139 277 2.8E-10 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS15495 6f406665b324d8c41983b2acb767056a 286 Pfam PF00892 EamA-like transporter family 3 128 1.1E-10 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS20155 36d41f617db1bb3e4f6e7fe45f41ad57 364 PIRSF PIRSF028101 1 364 1.3E-157 T 29-03-2018 IPR008311 Uncharacterised conserved protein UCP028101 Y880_RS20155 36d41f617db1bb3e4f6e7fe45f41ad57 364 SUPERFAMILY SSF50969 52 347 2.51E-21 T 29-03-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Y880_RS20155 36d41f617db1bb3e4f6e7fe45f41ad57 364 Gene3D G3DSA:2.130.10.10 264 362 0.003 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS20155 36d41f617db1bb3e4f6e7fe45f41ad57 364 Pfam PF07433 Protein of unknown function (DUF1513) 60 363 7.0E-113 T 29-03-2018 IPR008311 Uncharacterised conserved protein UCP028101 Y880_RS20155 36d41f617db1bb3e4f6e7fe45f41ad57 364 Gene3D G3DSA:2.130.10.10 22 263 3.6E-12 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF141868 506 749 3.66E-88 T 29-03-2018 IPR001633 EAL domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF55785 87 199 3.32E-21 T 29-03-2018 IPR000014 PAS domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 209 327 3.3E-21 T 29-03-2018 IPR000014 PAS domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 79 197 1.3E-11 T 29-03-2018 IPR000014 PAS domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF08447 PAS fold 104 192 1.4E-21 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00091 206 272 3.4E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00091 81 149 6.1E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 486 5.0E-46 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.30.450.20 206 346 7.9E-34 T 29-03-2018 Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF00989 PAS fold 209 316 1.5E-15 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00086 156 198 8.7E-10 T 29-03-2018 IPR001610 PAC motif Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00086 278 320 3.1E-5 T 29-03-2018 IPR001610 PAC motif Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 327 489 1.9E-40 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00267 320 491 4.0E-61 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.30.450.20 57 205 8.9E-32 T 29-03-2018 Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF55785 211 318 1.93E-29 T 29-03-2018 IPR000014 PAS domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.20.20.450 499 751 2.6E-101 T 29-03-2018 IPR001633 EAL domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF00563 EAL domain 507 742 8.2E-76 T 29-03-2018 IPR001633 EAL domain Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.30.70.270 347 498 2.4E-57 T 29-03-2018 Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF55073 336 492 1.57E-48 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS28050 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00052 501 747 8.1E-121 T 29-03-2018 IPR001633 EAL domain Y880_RS18285 111d1fea71d1f92f6dff1f911307b824 407 Gene3D G3DSA:3.40.50.1820 5 285 9.3E-35 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS18285 111d1fea71d1f92f6dff1f911307b824 407 Pfam PF00561 alpha/beta hydrolase fold 40 270 6.0E-13 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS18285 111d1fea71d1f92f6dff1f911307b824 407 SUPERFAMILY SSF53474 21 283 2.96E-38 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS00210 062730f74248a545cadf3a7eb6425cd6 284 Gene3D G3DSA:1.10.10.10 1 82 2.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00210 062730f74248a545cadf3a7eb6425cd6 284 Gene3D G3DSA:3.40.190.10 86 170 6.1E-14 T 29-03-2018 Y880_RS00210 062730f74248a545cadf3a7eb6425cd6 284 SUPERFAMILY SSF53850 86 281 6.64E-37 T 29-03-2018 Y880_RS00210 062730f74248a545cadf3a7eb6425cd6 284 Pfam PF03466 LysR substrate binding domain 85 281 1.9E-42 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS00210 062730f74248a545cadf3a7eb6425cd6 284 SUPERFAMILY SSF46785 3 109 2.78E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00210 062730f74248a545cadf3a7eb6425cd6 284 Gene3D G3DSA:3.40.190.10 171 258 1.5E-15 T 29-03-2018 Y880_RS00210 062730f74248a545cadf3a7eb6425cd6 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 7.2E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29695 2b9b9917cc6c45710061ecc85fd72516 224 SUPERFAMILY SSF53448 1 220 1.08E-56 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS29695 2b9b9917cc6c45710061ecc85fd72516 224 Gene3D G3DSA:3.90.550.10 1 224 1.0E-39 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS29695 2b9b9917cc6c45710061ecc85fd72516 224 Pfam PF00483 Nucleotidyl transferase 2 117 7.6E-16 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y880_RS23055 f6236ce34ea940ee76336002b721d077 310 SUPERFAMILY SSF51735 2 309 3.64E-87 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS23055 f6236ce34ea940ee76336002b721d077 310 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 49 309 1.2E-61 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y880_RS23055 f6236ce34ea940ee76336002b721d077 310 Gene3D G3DSA:3.30.1780.10 2 134 2.0E-37 T 29-03-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Y880_RS23055 f6236ce34ea940ee76336002b721d077 310 PIRSF PIRSF001439 4 310 2.8E-72 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y880_RS23055 f6236ce34ea940ee76336002b721d077 310 Gene3D G3DSA:3.40.50.720 135 293 9.6E-33 T 29-03-2018 Y880_RS02995 fafd531a589903919758b36bd39088a1 385 Gene3D G3DSA:2.40.40.10 23 245 2.6E-36 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y880_RS02995 fafd531a589903919758b36bd39088a1 385 Gene3D G3DSA:2.40.40.10 246 383 2.2E-34 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y880_RS02995 fafd531a589903919758b36bd39088a1 385 Pfam PF06725 3D domain 303 375 1.2E-23 T 29-03-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 Y880_RS02995 fafd531a589903919758b36bd39088a1 385 Pfam PF03562 MltA specific insert domain 55 280 3.7E-76 T 29-03-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 Y880_RS02995 fafd531a589903919758b36bd39088a1 385 PIRSF PIRSF019422 4 383 2.5E-118 T 29-03-2018 IPR026044 Membrane-bound lytic murein transglycosylase A Y880_RS02995 fafd531a589903919758b36bd39088a1 385 SUPERFAMILY SSF50685 41 380 2.89E-125 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y880_RS02995 fafd531a589903919758b36bd39088a1 385 SMART SM00925 126 281 1.4E-85 T 29-03-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 Gene3D G3DSA:3.40.50.720 2 151 5.7E-38 T 29-03-2018 Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 SUPERFAMILY SSF51735 3 247 6.08E-58 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 Gene3D G3DSA:3.40.50.720 152 229 1.3E-14 T 29-03-2018 Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 4.6E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 4.6E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 4.6E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.6E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 4.6E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 Pfam PF00106 short chain dehydrogenase 3 185 3.8E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 8.2E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 8.2E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 8.2E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07680 68c233e19c7c85304ca914fb1e77d13e 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 166 0.0023 T 29-03-2018 Y880_RS13810 a66d200b9c48c74713aa119e3654167f 84 Pfam PF06305 Lipopolysaccharide assembly protein A domain 26 74 2.1E-7 T 29-03-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 Pfam PF03496 ADP-ribosyltransferase exoenzyme 246 432 5.5E-31 T 29-03-2018 IPR003540 ADP ribosyltransferase GO:0005576|GO:0009405 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 SUPERFAMILY SSF47233 100 231 8.24E-51 T 29-03-2018 IPR014773 Virulence factor YopE uncharacterised domain Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 Gene3D G3DSA:3.90.176.10 250 415 2.8E-25 T 29-03-2018 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 Pfam PF03545 Yersinia virulence determinant (YopE) 132 201 1.5E-33 T 29-03-2018 IPR014773 Virulence factor YopE uncharacterised domain Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 SUPERFAMILY SSF56399 230 427 2.38E-33 T 29-03-2018 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 Gene3D G3DSA:1.20.120.260 103 228 9.6E-44 T 29-03-2018 IPR014773 Virulence factor YopE uncharacterised domain Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 39 56 1.2E-27 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 23 36 1.2E-27 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 132 149 1.2E-27 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 215 232 1.2E-27 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS26830 a1dd8e61efc632b51a116f27ae6f6834 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 181 199 1.2E-27 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 ProSitePatterns PS00455 Putative AMP-binding domain signature. 258 269 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Pfam PF13193 AMP-binding enzyme C-terminal domain 528 606 3.8E-24 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Pfam PF00501 AMP-binding enzyme 82 519 3.2E-91 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Gene3D G3DSA:2.30.38.10 425 512 3.6E-10 T 29-03-2018 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 642 53.965 T 29-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 80 1.1E-21 T 29-03-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 SUPERFAMILY SSF56801 11 637 2.49E-185 T 29-03-2018 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Gene3D G3DSA:3.40.50.980 264 424 2.4E-39 T 29-03-2018 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 640 0.0 T 29-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Gene3D G3DSA:3.30.300.30 515 644 2.8E-25 T 29-03-2018 Y880_RS22145 4afd0d2e9d3d9fd1d84b3590c424a62f 645 Gene3D G3DSA:3.40.50.980 72 263 2.3E-54 T 29-03-2018 Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 SUPERFAMILY SSF69255 346 433 2.22E-33 T 29-03-2018 Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 18 503 2.7E-177 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 Pfam PF05954 Phage late control gene D protein (GPD) 29 321 1.1E-80 T 29-03-2018 Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 559 582 1.1E-6 T 29-03-2018 IPR010609 Gp5, C-terminal Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 Gene3D G3DSA:2.40.50.230 351 433 1.1E-37 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 SUPERFAMILY SSF69279 187 346 3.23E-37 T 29-03-2018 Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 46 485 3.1E-126 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 SUPERFAMILY SSF69349 423 639 2.51E-45 T 29-03-2018 Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 SUPERFAMILY SSF69279 20 182 1.7E-44 T 29-03-2018 Y880_RS09215 ce463cecf0dc56e40e3c60a6429064c5 667 Gene3D G3DSA:3.55.50.10 95 186 3.2E-32 T 29-03-2018 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF56112 852 994 7.55E-17 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF56112 724 811 7.55E-17 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF56112 1023 1041 7.55E-17 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Pfam PF00128 Alpha amylase, catalytic domain 38 396 3.1E-69 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 576 1090 2.9E-162 T 29-03-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Gene3D G3DSA:3.20.20.80 20 474 3.4E-121 T 29-03-2018 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 14 559 2.1E-284 T 29-03-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Gene3D G3DSA:2.60.40.1180 475 570 1.1E-25 T 29-03-2018 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF51011 477 558 2.72E-17 T 29-03-2018 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Gene3D G3DSA:1.10.510.10 762 1041 7.1E-14 T 29-03-2018 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SMART SM00642 23 427 7.6E-103 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Pfam PF16657 Maltogenic Amylase, C-terminal domain 475 556 2.4E-27 T 29-03-2018 IPR032091 Maltogenic Amylase, C-terminal Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF51445 365 472 2.11E-129 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS07980 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF51445 12 338 2.11E-129 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS25645 00767dfa41a0eab746d9ce64eb576a58 653 Pfam PF13183 4Fe-4S dicluster domain 242 336 7.6E-12 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS25645 00767dfa41a0eab746d9ce64eb576a58 653 Gene3D G3DSA:1.10.1060.10 213 360 6.4E-26 T 29-03-2018 Y880_RS25645 00767dfa41a0eab746d9ce64eb576a58 653 SUPERFAMILY SSF46548 222 352 2.27E-19 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y880_RS25645 00767dfa41a0eab746d9ce64eb576a58 653 Pfam PF02754 Cysteine-rich domain 525 611 9.9E-14 T 29-03-2018 IPR004017 Cysteine-rich domain Y880_RS25645 00767dfa41a0eab746d9ce64eb576a58 653 Pfam PF02754 Cysteine-rich domain 402 481 0.0079 T 29-03-2018 IPR004017 Cysteine-rich domain Y880_RS25645 00767dfa41a0eab746d9ce64eb576a58 653 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 323 334 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS25645 00767dfa41a0eab746d9ce64eb576a58 653 Pfam PF11982 Domain of unknown function (DUF3483) 4 220 1.4E-89 T 29-03-2018 IPR021872 Protein of unknown function DUF3483 Y880_RS21235 c8764e97f35e0a6f9d14b0b447da8629 184 Pfam PF08719 Domain of unknown function (DUF1768) 25 182 1.3E-52 T 29-03-2018 IPR012816 NADAR Y880_RS21235 c8764e97f35e0a6f9d14b0b447da8629 184 SUPERFAMILY SSF143990 19 183 1.44E-51 T 29-03-2018 Y880_RS21235 c8764e97f35e0a6f9d14b0b447da8629 184 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 23 182 2.5E-49 T 29-03-2018 IPR012816 NADAR Y880_RS01990 f9c358a4cdba2bdddc6ece461a40630c 157 Gene3D G3DSA:3.10.450.50 4 132 4.8E-40 T 29-03-2018 Y880_RS01990 f9c358a4cdba2bdddc6ece461a40630c 157 Gene3D G3DSA:3.10.450.50 138 157 0.11 T 29-03-2018 Y880_RS01990 f9c358a4cdba2bdddc6ece461a40630c 157 Pfam PF02810 SEC-C motif 6 20 3.1E-4 T 29-03-2018 IPR004027 SEC-C motif Y880_RS01990 f9c358a4cdba2bdddc6ece461a40630c 157 Pfam PF02810 SEC-C motif 136 154 4.2E-7 T 29-03-2018 IPR004027 SEC-C motif Y880_RS01990 f9c358a4cdba2bdddc6ece461a40630c 157 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 2 129 28.087 T 29-03-2018 IPR023006 Uncharacterised protein family UPF0225 Y880_RS01990 f9c358a4cdba2bdddc6ece461a40630c 157 SUPERFAMILY SSF103642 133 155 3.6E-7 T 29-03-2018 Y880_RS01990 f9c358a4cdba2bdddc6ece461a40630c 157 SUPERFAMILY SSF54427 25 130 2.63E-33 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS15000 da7ce28b1717463f01c3cbd49f1c3039 209 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 20 200 2.5E-52 T 29-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 Y880_RS15000 da7ce28b1717463f01c3cbd49f1c3039 209 PIRSF PIRSF020680 10 207 5.1E-63 T 29-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 Y880_RS15000 da7ce28b1717463f01c3cbd49f1c3039 209 SUPERFAMILY SSF159709 26 202 8.89E-54 T 29-03-2018 Y880_RS15000 da7ce28b1717463f01c3cbd49f1c3039 209 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 18 201 2.2E-57 T 29-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 Y880_RS06655 bf8985cd7a06c0a69b400732b41c62f5 405 SUPERFAMILY SSF51569 4 389 1.54E-143 T 29-03-2018 Y880_RS06655 bf8985cd7a06c0a69b400732b41c62f5 405 Pfam PF01474 Class-II DAHP synthetase family 160 383 5.7E-78 T 29-03-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 Gene3D G3DSA:3.40.50.150 3 210 8.6E-58 T 29-03-2018 Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 39 66 - T 29-03-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 SMART SM00650 23 195 1.6E-87 T 29-03-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 Pfam PF00398 Ribosomal RNA adenine dimethylase 7 259 3.1E-64 T 29-03-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 7 262 57.755 T 29-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 Gene3D G3DSA:1.10.8.100 211 265 6.6E-24 T 29-03-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 SUPERFAMILY SSF53335 7 264 8.74E-80 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS29670 3b4fca817f715a8235afb7f46c03c698 268 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 7 261 3.0E-83 T 29-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 Gene3D G3DSA:3.20.20.70 3 293 6.1E-76 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 Pfam PF00701 Dihydrodipicolinate synthetase family 8 289 1.0E-58 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 1.1E-9 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 1.1E-9 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 1.1E-9 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 PIRSF PIRSF001365 3 293 5.3E-75 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 SMART SM01130 6 294 1.4E-82 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS03170 a3d9c7e2b8c54afe36126d79a6bbdf53 294 SUPERFAMILY SSF51569 3 289 2.83E-79 T 29-03-2018 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 314 4.0E-85 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 Gene3D G3DSA:3.40.1020.10 336 512 1.5E-71 T 29-03-2018 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 SUPERFAMILY SSF55021 418 511 4.12E-26 T 29-03-2018 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 50 63 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 SUPERFAMILY SSF55021 335 421 2.06E-28 T 29-03-2018 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 12 511 8.2E-246 T 29-03-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 Gene3D G3DSA:3.40.50.1100 164 332 1.4E-41 T 29-03-2018 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 SUPERFAMILY SSF53686 17 363 3.01E-109 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 423 511 1.6E-21 T 29-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 327 417 2.4E-25 T 29-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y880_RS28300 32ce8044f219e42d64b63332571c354d 512 Gene3D G3DSA:3.40.50.1100 11 163 3.4E-46 T 29-03-2018 Y880_RS23130 8aa3edea9bed5e581ce6f351dcabbc82 195 Gene3D G3DSA:3.40.50.450 1 195 5.7E-61 T 29-03-2018 Y880_RS23130 8aa3edea9bed5e581ce6f351dcabbc82 195 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 5 179 1.7E-62 T 29-03-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG Y880_RS23130 8aa3edea9bed5e581ce6f351dcabbc82 195 SUPERFAMILY SSF102405 2 180 2.9E-63 T 29-03-2018 Y880_RS23130 8aa3edea9bed5e581ce6f351dcabbc82 195 Pfam PF03641 Possible lysine decarboxylase 48 177 4.5E-41 T 29-03-2018 IPR031100 LOG family Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 SUPERFAMILY SSF50156 385 472 4.86E-15 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 SMART SM00228 384 463 3.7E-11 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 SMART SM00228 270 352 3.9E-15 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 Gene3D G3DSA:2.40.10.10 164 264 2.8E-40 T 29-03-2018 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 28 470 2.7E-162 T 29-03-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 Gene3D G3DSA:2.30.42.10 383 474 1.2E-17 T 29-03-2018 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 Pfam PF13180 PDZ domain 271 360 3.5E-18 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 Pfam PF13180 PDZ domain 385 466 5.5E-10 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 Gene3D G3DSA:2.30.42.10 265 374 4.4E-27 T 29-03-2018 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 128 148 5.9E-53 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 310 322 5.9E-53 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 107 119 5.9E-53 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 168 192 5.9E-53 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 202 219 5.9E-53 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 224 241 5.9E-53 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 SUPERFAMILY SSF50156 252 358 4.05E-23 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 Gene3D G3DSA:2.40.10.10 25 163 3.6E-41 T 29-03-2018 Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 SUPERFAMILY SSF50494 95 279 2.58E-70 T 29-03-2018 IPR009003 Peptidase S1, PA clan Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 SUPERFAMILY SSF50494 6 48 2.58E-70 T 29-03-2018 IPR009003 Peptidase S1, PA clan Y880_RS00445 a3a90127e94a09ee89efb8ea18d07b85 474 Pfam PF13365 Trypsin-like peptidase domain 98 231 4.8E-35 T 29-03-2018 Y880_RS13690 1dd37db6e431af269a09737f11ed3249 180 SUPERFAMILY SSF46689 1 70 3.54E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS13690 1dd37db6e431af269a09737f11ed3249 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 5.2E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS13690 1dd37db6e431af269a09737f11ed3249 180 SUPERFAMILY SSF48498 78 179 1.25E-25 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS13690 1dd37db6e431af269a09737f11ed3249 180 Gene3D G3DSA:1.10.10.60 2 57 2.3E-14 T 29-03-2018 Y880_RS13690 1dd37db6e431af269a09737f11ed3249 180 Gene3D G3DSA:1.10.357.10 58 180 4.9E-16 T 29-03-2018 Y880_RS13690 1dd37db6e431af269a09737f11ed3249 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.9E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS13690 1dd37db6e431af269a09737f11ed3249 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.9E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS00265 09962757be0d643061a8d179182744de 230 Gene3D G3DSA:3.30.70.580 59 140 6.0E-13 T 29-03-2018 Y880_RS00265 09962757be0d643061a8d179182744de 230 Gene3D G3DSA:3.10.290.10 1 58 1.1E-13 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS00265 09962757be0d643061a8d179182744de 230 SUPERFAMILY SSF55174 1 91 3.93E-14 T 29-03-2018 Y880_RS00265 09962757be0d643061a8d179182744de 230 Gene3D G3DSA:3.30.70.1560 141 209 3.4E-20 T 29-03-2018 Y880_RS00265 09962757be0d643061a8d179182744de 230 SMART SM00363 1 58 9.4E-8 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS00265 09962757be0d643061a8d179182744de 230 Pfam PF00849 RNA pseudouridylate synthase 62 190 1.2E-12 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS00265 09962757be0d643061a8d179182744de 230 Pfam PF01479 S4 domain 1 42 3.4E-8 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS00265 09962757be0d643061a8d179182744de 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y880_RS00265 09962757be0d643061a8d179182744de 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 7.6E-41 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y880_RS00265 09962757be0d643061a8d179182744de 230 SUPERFAMILY SSF55120 61 227 5.44E-43 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 Gene3D G3DSA:1.10.760.10 225 318 1.7E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 33 314 1.1E-80 T 29-03-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 PRINTS PR00605 Class IC cytochrome C signature 192 214 2.8E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 PRINTS PR00605 Class IC cytochrome C signature 150 161 2.8E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 PIRSF PIRSF000006 1 314 2.4E-106 T 29-03-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 Gene3D G3DSA:1.10.760.10 104 224 9.0E-26 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 4.4E-23 T 29-03-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 229 307 2.8E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 140 214 5.6E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 SUPERFAMILY SSF46626 55 78 2.47E-32 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 SUPERFAMILY SSF46626 120 219 2.47E-32 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04780 f6fca4d1ebe70dff01776022797e8420 318 SUPERFAMILY SSF46626 225 313 1.69E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS19010 7650e036f9f5caf0eb2cc32f3f388a5c 339 Gene3D G3DSA:3.40.50.920 204 334 7.5E-38 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS19010 7650e036f9f5caf0eb2cc32f3f388a5c 339 Pfam PF02780 Transketolase, C-terminal domain 203 325 7.1E-44 T 29-03-2018 IPR033248 Transketolase, C-terminal domain Y880_RS19010 7650e036f9f5caf0eb2cc32f3f388a5c 339 SUPERFAMILY SSF52518 3 213 6.87E-64 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS19010 7650e036f9f5caf0eb2cc32f3f388a5c 339 SUPERFAMILY SSF52922 198 333 6.02E-42 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS19010 7650e036f9f5caf0eb2cc32f3f388a5c 339 Pfam PF02779 Transketolase, pyrimidine binding domain 4 189 5.6E-56 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS19010 7650e036f9f5caf0eb2cc32f3f388a5c 339 Gene3D G3DSA:3.40.50.970 1 203 1.1E-67 T 29-03-2018 Y880_RS19010 7650e036f9f5caf0eb2cc32f3f388a5c 339 SMART SM00861 5 189 1.5E-58 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS19985 ce1aed3d297dc4e954554b1cf5dfb647 190 SUPERFAMILY SSF101874 18 188 8.89E-16 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS19985 ce1aed3d297dc4e954554b1cf5dfb647 190 Pfam PF04264 YceI-like domain 20 160 8.2E-8 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS19985 ce1aed3d297dc4e954554b1cf5dfb647 190 PIRSF PIRSF029811 1 190 5.2E-62 T 29-03-2018 IPR027016 Uncharacterised protein with YceI domain Y880_RS19985 ce1aed3d297dc4e954554b1cf5dfb647 190 SMART SM00867 19 188 2.4E-10 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS19985 ce1aed3d297dc4e954554b1cf5dfb647 190 Gene3D G3DSA:2.40.128.110 16 190 7.8E-20 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS06045 ed0f320dc3a59843778538cd0ce6164f 207 Gene3D G3DSA:1.20.1260.10 2 207 1.2E-70 T 29-03-2018 IPR012347 Ferritin-related Y880_RS06045 ed0f320dc3a59843778538cd0ce6164f 207 PIRSF PIRSF020736 2 204 1.8E-90 T 29-03-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 Y880_RS06045 ed0f320dc3a59843778538cd0ce6164f 207 SUPERFAMILY SSF47240 6 203 4.87E-76 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS06045 ed0f320dc3a59843778538cd0ce6164f 207 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 57 199 1.0E-69 T 29-03-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 Y880_RS06045 ed0f320dc3a59843778538cd0ce6164f 207 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 4 55 3.8E-18 T 29-03-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 Y880_RS12140 96fc08d63fc2ee8868f4cc1faa1e70bc 530 Gene3D G3DSA:1.20.1250.20 22 219 3.7E-17 T 29-03-2018 Y880_RS12140 96fc08d63fc2ee8868f4cc1faa1e70bc 530 Pfam PF07690 Major Facilitator Superfamily 35 429 1.1E-31 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS12140 96fc08d63fc2ee8868f4cc1faa1e70bc 530 SUPERFAMILY SSF103473 17 213 1.31E-34 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS12140 96fc08d63fc2ee8868f4cc1faa1e70bc 530 SUPERFAMILY SSF103473 266 439 1.31E-34 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS12140 96fc08d63fc2ee8868f4cc1faa1e70bc 530 SUPERFAMILY SSF103473 493 517 1.31E-34 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS12140 96fc08d63fc2ee8868f4cc1faa1e70bc 530 Gene3D G3DSA:1.20.1250.20 277 527 5.5E-15 T 29-03-2018 Y880_RS18735 1caaa87e302e4a29bcb73647bff84733 434 Pfam PF04966 Carbohydrate-selective porin, OprB family 64 427 5.7E-68 T 29-03-2018 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 Y880_RS18735 1caaa87e302e4a29bcb73647bff84733 434 Gene3D G3DSA:2.40.160.10 94 425 5.8E-4 T 29-03-2018 Y880_RS02860 6ac5fdecd390b5dae88afef9a52706f3 254 Gene3D G3DSA:3.75.10.10 1 254 3.1E-55 T 29-03-2018 Y880_RS02860 6ac5fdecd390b5dae88afef9a52706f3 254 Pfam PF02274 Amidinotransferase 30 251 1.9E-16 T 29-03-2018 Y880_RS02860 6ac5fdecd390b5dae88afef9a52706f3 254 SUPERFAMILY SSF55909 2 253 1.71E-58 T 29-03-2018 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 SMART SM00382 150 293 7.1E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 Gene3D G3DSA:1.10.10.60 406 460 7.0E-11 T 29-03-2018 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 216 231 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 Pfam PF02954 Bacterial regulatory protein, Fis family 419 458 1.5E-12 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 343 352 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 SUPERFAMILY SSF46689 343 458 1.34E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 Pfam PF00072 Response regulator receiver domain 5 114 2.5E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 154 167 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 SUPERFAMILY SSF52540 132 371 1.62E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 SMART SM00448 3 114 1.3E-33 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 442 462 7.0E-6 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 442 7.0E-6 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 Gene3D G3DSA:3.40.50.2300 2 139 1.4E-33 T 29-03-2018 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 Gene3D G3DSA:1.10.8.60 303 374 5.5E-22 T 29-03-2018 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 Gene3D G3DSA:3.40.50.300 140 302 9.4E-27 T 29-03-2018 Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 SUPERFAMILY SSF52172 4 174 3.84E-41 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS02355 1d8c4fa06c1c94384ec23e2f317477f1 473 Pfam PF00158 Sigma-54 interaction domain 135 296 3.6E-67 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 SMART SM00388 305 370 2.2E-22 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Pfam PF00512 His Kinase A (phospho-acceptor) domain 306 370 1.1E-17 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 SMART SM00448 663 776 4.1E-41 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Gene3D G3DSA:3.40.50.2300 656 785 5.8E-45 T 29-03-2018 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Gene3D G3DSA:1.10.287.130 302 366 8.2E-16 T 29-03-2018 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 SUPERFAMILY SSF52172 542 645 1.46E-6 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Gene3D G3DSA:1.20.1600.10 7 301 2.2E-4 T 29-03-2018 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Gene3D G3DSA:3.40.50.2300 578 649 0.076 T 29-03-2018 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 SUPERFAMILY SSF55874 359 528 2.36E-48 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 526 1.3E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 1.3E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 524 1.3E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 1.3E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 1.3E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Gene3D G3DSA:3.30.565.10 374 532 2.3E-49 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 SUPERFAMILY SSF52172 662 781 3.98E-42 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 SUPERFAMILY SSF47384 290 371 1.04E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 SMART SM00387 416 527 8.2E-40 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS12085 152954167d722dd4ba1012ca55704a6c 786 Pfam PF00072 Response regulator receiver domain 665 776 1.7E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22075 013bdb1a14140e42791ce7fee0c77a00 363 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 363 41.185 T 29-03-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 Y880_RS22075 013bdb1a14140e42791ce7fee0c77a00 363 Gene3D G3DSA:3.40.50.150 160 363 2.9E-34 T 29-03-2018 Y880_RS22075 013bdb1a14140e42791ce7fee0c77a00 363 SUPERFAMILY SSF53335 10 362 9.77E-57 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22075 013bdb1a14140e42791ce7fee0c77a00 363 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 345 355 - T 29-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site Y880_RS22075 013bdb1a14140e42791ce7fee0c77a00 363 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 363 1.9E-170 T 29-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Y880_RS22075 013bdb1a14140e42791ce7fee0c77a00 363 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 11 363 3.0E-177 T 29-03-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 Y880_RS22075 013bdb1a14140e42791ce7fee0c77a00 363 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 296 325 - T 29-03-2018 IPR030390 RNA methyltransferase TrmA, active site Y880_RS20180 b2a1b62ca21a8dd5c42f773f679a4587 234 SUPERFAMILY SSF56112 18 187 6.83E-10 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS20180 b2a1b62ca21a8dd5c42f773f679a4587 234 Gene3D G3DSA:1.10.510.10 32 211 1.6E-4 T 29-03-2018 Y880_RS20180 b2a1b62ca21a8dd5c42f773f679a4587 234 PIRSF PIRSF026326 1 234 4.1E-110 T 29-03-2018 IPR027023 Putative lipopolysaccharide kinase InaA Y880_RS20180 b2a1b62ca21a8dd5c42f773f679a4587 234 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 18 221 4.2E-74 T 29-03-2018 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 Reactome: R-HSA-6782315|Reactome: R-HSA-6804756 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82714 183 264 3.53E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82693 267 323 6.28E-24 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82693 137 181 6.28E-24 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Gene3D G3DSA:3.30.70.1320 138 197 0.016 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82693 553 650 4.45E-23 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82714 699 781 7.06E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.1E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82693 42 132 4.45E-20 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Gene3D G3DSA:3.30.2090.10 698 784 2.2E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Gene3D G3DSA:3.30.2090.10 198 265 8.9E-12 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Gene3D G3DSA:3.30.70.1430 555 650 1.1E-10 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82866 290 490 3.4E-53 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Pfam PF00873 AcrB/AcrD/AcrF family 6 1002 9.0E-274 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82866 808 1003 4.19E-44 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Gene3D G3DSA:1.20.1640.10 785 1005 1.0E-40 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82693 650 698 1.88E-15 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 SUPERFAMILY SSF82693 785 832 1.88E-15 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Gene3D G3DSA:3.30.70.1430 41 137 3.3E-22 T 29-03-2018 Y880_RS20165 6ef1685d4460c29a3a751b16f31d9780 1018 Gene3D G3DSA:1.20.1640.10 280 497 1.7E-50 T 29-03-2018 Y880_RS17475 6657ee5dc9e59d4525d1490d9cbb12ef 311 Gene3D G3DSA:3.40.30.10 1 99 6.7E-12 T 29-03-2018 Y880_RS17475 6657ee5dc9e59d4525d1490d9cbb12ef 311 SUPERFAMILY SSF52833 4 91 1.51E-15 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS17475 6657ee5dc9e59d4525d1490d9cbb12ef 311 Gene3D G3DSA:1.20.1050.10 100 218 1.2E-18 T 29-03-2018 Y880_RS17475 6657ee5dc9e59d4525d1490d9cbb12ef 311 Pfam PF13410 Glutathione S-transferase, C-terminal domain 150 214 3.9E-8 T 29-03-2018 Y880_RS17475 6657ee5dc9e59d4525d1490d9cbb12ef 311 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 77 1.6E-12 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS17475 6657ee5dc9e59d4525d1490d9cbb12ef 311 SUPERFAMILY SSF47616 139 217 1.08E-13 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 SMART SM00091 433 500 5.4E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 654 761 2.5E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 Gene3D G3DSA:1.10.287.130 541 604 1.6E-6 T 29-03-2018 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 SMART SM01080 43 326 9.8E-88 T 29-03-2018 IPR007890 CHASE2 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 690 704 2.9E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 741 2.9E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 747 760 2.9E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 SMART SM00387 653 763 1.1E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 Gene3D G3DSA:3.30.565.10 611 766 1.9E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 SUPERFAMILY SSF47384 537 608 8.24E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 PIRSF PIRSF037347 2 766 3.2E-191 T 29-03-2018 IPR017181 Signal transduction histidine kinase, CHASE2 sensor domain-containing, predicted Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 Pfam PF05226 CHASE2 domain 35 323 2.0E-54 T 29-03-2018 IPR007890 CHASE2 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 SUPERFAMILY SSF55874 603 762 4.85E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 Gene3D G3DSA:3.30.450.20 412 540 7.3E-13 T 29-03-2018 Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 SUPERFAMILY SSF55785 418 535 3.24E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS18420 9fc7477200121c4414d4c5b321d9e172 766 Pfam PF08448 PAS fold 439 540 9.9E-7 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS20830 9c571862d631afc7e61bff30207f6269 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 70 2.1E-13 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Y880_RS20830 9c571862d631afc7e61bff30207f6269 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 300 9.2E-31 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS20830 9c571862d631afc7e61bff30207f6269 303 SUPERFAMILY SSF161098 94 281 5.63E-29 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS20830 9c571862d631afc7e61bff30207f6269 303 Gene3D G3DSA:1.10.3720.10 21 288 6.2E-44 T 29-03-2018 Y880_RS13675 5116dea1729aedca1c877166ec120c83 145 SUPERFAMILY SSF54637 3 139 2.8E-39 T 29-03-2018 IPR029069 HotDog domain Y880_RS13675 5116dea1729aedca1c877166ec120c83 145 Gene3D G3DSA:3.10.129.10 2 143 1.6E-30 T 29-03-2018 Y880_RS13675 5116dea1729aedca1c877166ec120c83 145 Pfam PF13279 Thioesterase-like superfamily 15 134 3.1E-12 T 29-03-2018 Y880_RS26275 b334c837010e742cbe71d725b0b47e38 194 Pfam PF09335 SNARE associated Golgi protein 51 155 3.3E-8 T 29-03-2018 IPR032816 SNARE associated Golgi protein Y880_RS21015 22cd04e82b6ef584b1f1af6e95999d82 545 Pfam PF08479 POTRA domain, ShlB-type 61 134 1.6E-22 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y880_RS21015 22cd04e82b6ef584b1f1af6e95999d82 545 Gene3D G3DSA:2.40.160.50 164 545 1.4E-44 T 29-03-2018 Y880_RS21015 22cd04e82b6ef584b1f1af6e95999d82 545 Gene3D G3DSA:3.10.20.310 63 134 4.3E-18 T 29-03-2018 Y880_RS21015 22cd04e82b6ef584b1f1af6e95999d82 545 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 196 489 7.5E-26 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 245 258 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 Gene3D G3DSA:3.90.1150.10 2 70 3.4E-15 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 SUPERFAMILY SSF53383 1 398 1.96E-115 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 PRINTS PR00799 Aspartate aminotransferase signature 275 300 3.6E-38 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 PRINTS PR00799 Aspartate aminotransferase signature 177 196 3.6E-38 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 PRINTS PR00799 Aspartate aminotransferase signature 343 361 3.6E-38 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 PRINTS PR00799 Aspartate aminotransferase signature 208 220 3.6E-38 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 Gene3D G3DSA:3.40.640.10 71 302 6.3E-28 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 Gene3D G3DSA:3.90.1150.10 304 398 3.0E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS13740 e509eca16ab4509257c27fa5c41ebc95 398 Pfam PF00155 Aminotransferase class I and II 30 394 2.9E-77 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS28420 8e194d8ecffa46268f7c63942157dbb4 398 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 171 344 7.8E-19 T 29-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Y880_RS28420 8e194d8ecffa46268f7c63942157dbb4 398 Gene3D G3DSA:2.30.130.10 1 74 1.2E-20 T 29-03-2018 IPR002478 PUA domain GO:0003723 Y880_RS28420 8e194d8ecffa46268f7c63942157dbb4 398 SUPERFAMILY SSF88697 4 75 3.73E-9 T 29-03-2018 IPR015947 PUA-like domain Y880_RS28420 8e194d8ecffa46268f7c63942157dbb4 398 Gene3D G3DSA:3.40.50.150 182 396 2.0E-39 T 29-03-2018 Y880_RS28420 8e194d8ecffa46268f7c63942157dbb4 398 Gene3D G3DSA:3.30.750.80 78 181 1.1E-29 T 29-03-2018 Y880_RS28420 8e194d8ecffa46268f7c63942157dbb4 398 SUPERFAMILY SSF53335 85 391 9.6E-73 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 521 3.8E-13 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 SUPERFAMILY SSF46977 425 529 1.57E-31 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 SUPERFAMILY SSF51905 356 448 1.3E-72 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 SUPERFAMILY SSF51905 3 255 1.3E-72 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 PIRSF PIRSF000171 1 323 6.2E-23 T 29-03-2018 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 PIRSF PIRSF000171 338 533 1.8E-11 T 29-03-2018 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 SUPERFAMILY SSF56425 238 353 8.07E-44 T 29-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 5.3E-9 T 29-03-2018 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.3E-9 T 29-03-2018 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 Pfam PF00890 FAD binding domain 8 392 3.8E-107 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 6 520 2.6E-201 T 29-03-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 Gene3D G3DSA:3.50.50.60 1 438 1.1E-70 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS00420 2c92fd1bbade562d3c9f969a0f55f195 538 Gene3D G3DSA:1.20.58.100 439 533 1.6E-27 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS11640 bdf7a1caff6bec8f20527b26649dff0c 80 Pfam PF11747 Killing trait 11 76 7.1E-26 T 29-03-2018 IPR021070 Killing trait, RebB Y880_RS23290 9d9d0ec2ecd9b318caaa03b1e325f89a 347 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 15 63 3.1E-17 T 29-03-2018 IPR025713 Motility protein B, N-terminal domain Y880_RS23290 9d9d0ec2ecd9b318caaa03b1e325f89a 347 SUPERFAMILY SSF103088 171 277 1.16E-22 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS23290 9d9d0ec2ecd9b318caaa03b1e325f89a 347 Gene3D G3DSA:3.30.1330.60 98 306 1.1E-37 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS23290 9d9d0ec2ecd9b318caaa03b1e325f89a 347 Pfam PF00691 OmpA family 174 264 4.0E-14 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS25380 e3804477997e34626629aecd705085ad 55 PRINTS PR00163 Rubredoxin signature 3 19 5.7E-9 T 29-03-2018 IPR024935 Rubredoxin domain GO:0005506 Y880_RS25380 e3804477997e34626629aecd705085ad 55 PRINTS PR00163 Rubredoxin signature 33 49 5.7E-9 T 29-03-2018 IPR024935 Rubredoxin domain GO:0005506 Y880_RS25380 e3804477997e34626629aecd705085ad 55 Gene3D G3DSA:2.20.28.10 1 54 6.7E-27 T 29-03-2018 Y880_RS25380 e3804477997e34626629aecd705085ad 55 PIRSF PIRSF000071 1 55 2.7E-25 T 29-03-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Y880_RS25380 e3804477997e34626629aecd705085ad 55 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 29-03-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Y880_RS25380 e3804477997e34626629aecd705085ad 55 SUPERFAMILY SSF57802 1 53 6.73E-23 T 29-03-2018 Y880_RS25380 e3804477997e34626629aecd705085ad 55 Pfam PF00301 Rubredoxin 3 49 2.7E-23 T 29-03-2018 IPR024935 Rubredoxin domain GO:0005506 Y880_RS08325 f85155faab270ed80b096353d590045c 351 Gene3D G3DSA:3.90.1200.10 138 329 2.3E-24 T 29-03-2018 Y880_RS08325 f85155faab270ed80b096353d590045c 351 Gene3D G3DSA:3.30.200.20 18 125 8.7E-16 T 29-03-2018 Y880_RS08325 f85155faab270ed80b096353d590045c 351 Pfam PF01636 Phosphotransferase enzyme family 41 288 2.1E-37 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS08325 f85155faab270ed80b096353d590045c 351 SUPERFAMILY SSF56112 37 322 3.94E-40 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 365 383 - T 29-03-2018 IPR018511 Hemolysin-type calcium-binding conserved site Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 PIRSF PIRSF001205 1 479 1.2E-230 T 29-03-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 Gene3D G3DSA:2.150.10.10 252 479 8.0E-56 T 29-03-2018 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 Gene3D G3DSA:3.40.390.10 27 251 1.1E-38 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 Pfam PF08548 Peptidase M10 serralysin C terminal 257 479 4.2E-82 T 29-03-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 SUPERFAMILY SSF55486 14 255 7.58E-71 T 29-03-2018 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 SUPERFAMILY SSF51120 256 478 6.41E-48 T 29-03-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 170 230 1.7E-5 T 29-03-2018 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 PRINTS PR00313 NodO calcium binding signature 369 377 3.9E-12 T 29-03-2018 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 PRINTS PR00313 NodO calcium binding signature 339 350 3.9E-12 T 29-03-2018 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 PRINTS PR00313 NodO calcium binding signature 360 368 3.9E-12 T 29-03-2018 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 PRINTS PR00313 NodO calcium binding signature 378 387 3.9E-12 T 29-03-2018 Y880_RS03145 cc14159267b53260ad6e77cdbc938390 479 SMART SM00235 78 241 4.9E-29 T 29-03-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 Y880_RS03320 09312e9eb4278a1fdcb6f599895a0ed0 149 SMART SM00347 36 135 1.4E-11 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS03320 09312e9eb4278a1fdcb6f599895a0ed0 149 Pfam PF12802 MarR family 42 98 9.3E-11 T 29-03-2018 Y880_RS03320 09312e9eb4278a1fdcb6f599895a0ed0 149 Gene3D G3DSA:1.10.10.10 5 149 1.2E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03320 09312e9eb4278a1fdcb6f599895a0ed0 149 SUPERFAMILY SSF46785 13 146 8.35E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27155 ca6c48466a5683aa24913dcc16163538 295 Gene3D G3DSA:1.20.120.80 77 295 8.1E-75 T 29-03-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27155 ca6c48466a5683aa24913dcc16163538 295 Gene3D G3DSA:1.10.287.70 1 76 5.9E-24 T 29-03-2018 Y880_RS27155 ca6c48466a5683aa24913dcc16163538 295 Pfam PF00510 Cytochrome c oxidase subunit III 7 294 2.3E-50 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27155 ca6c48466a5683aa24913dcc16163538 295 SUPERFAMILY SSF81452 3 294 7.85E-85 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS22780 d22432bf89785330dd5b954688982907 107 PRINTS PR01591 DNA-binding protein FIS signature 66 78 7.6E-12 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y880_RS22780 d22432bf89785330dd5b954688982907 107 PRINTS PR01591 DNA-binding protein FIS signature 35 51 7.6E-12 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y880_RS22780 d22432bf89785330dd5b954688982907 107 PRINTS PR01591 DNA-binding protein FIS signature 51 66 7.6E-12 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y880_RS22780 d22432bf89785330dd5b954688982907 107 SUPERFAMILY SSF46689 24 106 8.96E-23 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS22780 d22432bf89785330dd5b954688982907 107 PIRSF PIRSF002097 9 107 2.9E-42 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y880_RS22780 d22432bf89785330dd5b954688982907 107 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 87 107 2.2E-10 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS22780 d22432bf89785330dd5b954688982907 107 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 70 87 2.2E-10 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS22780 d22432bf89785330dd5b954688982907 107 Gene3D G3DSA:1.10.10.60 11 106 4.8E-20 T 29-03-2018 Y880_RS22780 d22432bf89785330dd5b954688982907 107 Pfam PF02954 Bacterial regulatory protein, Fis family 66 104 8.5E-14 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 Gene3D G3DSA:2.30.330.10 149 217 2.5E-7 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 40 303 1.0E-64 T 29-03-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 SUPERFAMILY SSF101801 232 308 1.7E-18 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 Gene3D G3DSA:2.30.330.10 220 309 3.3E-21 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 234 303 6.3E-17 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 236 248 3.9E-8 T 29-03-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 280 297 3.9E-8 T 29-03-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 Y880_RS05535 c521fc1c1158bb4530f8e5b9f9894d4a 309 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 175 185 3.9E-8 T 29-03-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 Y880_RS08140 7813afc4f09a45d8cf69d1b166188d6a 458 SMART SM01236 131 228 1.8E-27 T 29-03-2018 Y880_RS08140 7813afc4f09a45d8cf69d1b166188d6a 458 Pfam PF14518 Iron-containing redox enzyme 100 264 5.3E-33 T 29-03-2018 IPR028201 PqqC-like protein Y880_RS08140 7813afc4f09a45d8cf69d1b166188d6a 458 Gene3D G3DSA:1.10.10.10 325 350 0.029 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08140 7813afc4f09a45d8cf69d1b166188d6a 458 Gene3D G3DSA:1.20.910.10 94 270 1.7E-24 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS04255 83d5dbc190d12218af8c67335fa64e60 262 PIRSF PIRSF002884 26 262 3.5E-94 T 29-03-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 Y880_RS04255 83d5dbc190d12218af8c67335fa64e60 262 Pfam PF04344 Chemotaxis phosphatase, CheZ 50 262 3.0E-75 T 29-03-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 Y880_RS04255 83d5dbc190d12218af8c67335fa64e60 262 SUPERFAMILY SSF75708 38 261 1.18E-61 T 29-03-2018 Y880_RS04255 83d5dbc190d12218af8c67335fa64e60 262 Gene3D G3DSA:1.10.287.500 75 203 4.2E-18 T 29-03-2018 Y880_RS02765 ef72366235b28e851f319bf53fd2aa3f 55 Pfam PF06796 Periplasmic nitrate reductase protein NapE 2 53 1.4E-24 T 29-03-2018 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE Y880_RS02765 ef72366235b28e851f319bf53fd2aa3f 55 TIGRFAM TIGR02973 nitrate_rd_NapE: periplasmic nitrate reductase, NapE protein 11 52 1.8E-23 T 29-03-2018 IPR004448 Nitrate reductas, NapE, periplasmic Y880_RS18220 d3ba785988c3629061fae47e23b6d493 297 SUPERFAMILY SSF53850 97 289 5.12E-29 T 29-03-2018 Y880_RS18220 d3ba785988c3629061fae47e23b6d493 297 Gene3D G3DSA:1.10.10.10 6 93 2.6E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18220 d3ba785988c3629061fae47e23b6d493 297 Gene3D G3DSA:3.40.190.10 181 263 6.1E-12 T 29-03-2018 Y880_RS18220 d3ba785988c3629061fae47e23b6d493 297 Gene3D G3DSA:3.40.190.10 100 180 7.1E-17 T 29-03-2018 Y880_RS18220 d3ba785988c3629061fae47e23b6d493 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 72 1.1E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS18220 d3ba785988c3629061fae47e23b6d493 297 SUPERFAMILY SSF46785 9 119 1.58E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18220 d3ba785988c3629061fae47e23b6d493 297 Pfam PF03466 LysR substrate binding domain 97 285 1.6E-29 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS15705 b0f4761cb06a7b11710b8c71bd550767 328 SMART SM01236 174 276 3.7E-21 T 29-03-2018 Y880_RS15705 b0f4761cb06a7b11710b8c71bd550767 328 Pfam PF14515 Haem-oxygenase-associated N-terminal helices 1 93 3.5E-51 T 29-03-2018 IPR029474 Haem-oxygenase-associated, N-terminal helices Y880_RS15705 b0f4761cb06a7b11710b8c71bd550767 328 SUPERFAMILY SSF48613 107 321 5.72E-25 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS15705 b0f4761cb06a7b11710b8c71bd550767 328 Gene3D G3DSA:1.20.910.10 99 328 2.0E-27 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS15705 b0f4761cb06a7b11710b8c71bd550767 328 Gene3D G3DSA:1.10.1240.20 7 93 4.6E-43 T 29-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 Y880_RS15705 b0f4761cb06a7b11710b8c71bd550767 328 Pfam PF14518 Iron-containing redox enzyme 159 276 1.3E-13 T 29-03-2018 IPR028201 PqqC-like protein Y880_RS27315 e385d4640b0ebdaae40a0a618361f0a0 187 Gene3D G3DSA:3.30.1020.10 153 183 3.8E-10 T 29-03-2018 Y880_RS27315 e385d4640b0ebdaae40a0a618361f0a0 187 SUPERFAMILY SSF52833 1 186 1.15E-51 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS27315 e385d4640b0ebdaae40a0a618361f0a0 187 Pfam PF00578 AhpC/TSA family 4 132 4.5E-30 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS27315 e385d4640b0ebdaae40a0a618361f0a0 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 2.3E-7 T 29-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS27315 e385d4640b0ebdaae40a0a618361f0a0 187 PIRSF PIRSF000239 1 187 3.3E-45 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS27315 e385d4640b0ebdaae40a0a618361f0a0 187 Gene3D G3DSA:3.40.30.10 4 152 2.7E-30 T 29-03-2018 Y880_RS27315 e385d4640b0ebdaae40a0a618361f0a0 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.8E-95 T 29-03-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS29005 dc0c5d5b86d41a1d1e5ca308398303de 452 Pfam PF06123 Inner membrane protein CreD 5 438 4.7E-167 T 29-03-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Y880_RS29005 dc0c5d5b86d41a1d1e5ca308398303de 452 PIRSF PIRSF004548 1 451 2.2E-178 T 29-03-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Y880_RS04030 ed46a2a048fe9bd0233f75b7cc82c3a6 397 SUPERFAMILY SSF103473 9 379 6.15E-23 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS04030 ed46a2a048fe9bd0233f75b7cc82c3a6 397 Gene3D G3DSA:1.20.1250.20 206 385 1.7E-9 T 29-03-2018 Y880_RS04030 ed46a2a048fe9bd0233f75b7cc82c3a6 397 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 20 379 1.5E-127 T 29-03-2018 IPR010645 Uncharacterised MFS-type transporter YbfB Y880_RS04030 ed46a2a048fe9bd0233f75b7cc82c3a6 397 Gene3D G3DSA:1.20.1250.20 6 204 3.0E-10 T 29-03-2018 Y880_RS09450 9a93c880ba71f84b3cbb93515688ed5d 472 Gene3D G3DSA:2.40.160.10 57 471 6.4E-99 T 29-03-2018 Y880_RS09450 9a93c880ba71f84b3cbb93515688ed5d 472 Pfam PF03573 outer membrane porin, OprD family 52 470 6.0E-137 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS26770 28e798fab1488045615d6e039570f443 402 Gene3D G3DSA:3.40.50.1100 204 400 6.8E-39 T 29-03-2018 Y880_RS26770 28e798fab1488045615d6e039570f443 402 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 12 395 5.0E-196 T 29-03-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS26770 28e798fab1488045615d6e039570f443 402 Gene3D G3DSA:3.40.50.1100 74 203 3.4E-38 T 29-03-2018 Y880_RS26770 28e798fab1488045615d6e039570f443 402 Gene3D G3DSA:3.40.50.1100 14 73 8.2E-8 T 29-03-2018 Y880_RS26770 28e798fab1488045615d6e039570f443 402 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 58 383 3.0E-46 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS26770 28e798fab1488045615d6e039570f443 402 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 7 396 52.811 T 29-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS26770 28e798fab1488045615d6e039570f443 402 SUPERFAMILY SSF53686 8 394 1.7E-151 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS26770 28e798fab1488045615d6e039570f443 402 PIRSF PIRSF001413 4 402 3.7E-163 T 29-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS26770 28e798fab1488045615d6e039570f443 402 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 86 100 - T 29-03-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS17470 9a30c4b6b8ac8df1a23c405cf85889f7 250 Pfam PF01988 VIT family 32 242 1.5E-57 T 29-03-2018 IPR008217 Ccc1 family Y880_RS12605 2f90d017ffc1dfd07aa923ccc098fb28 255 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS12605 2f90d017ffc1dfd07aa923ccc098fb28 255 PIRSF PIRSF039085 1 255 2.2E-114 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y880_RS12605 2f90d017ffc1dfd07aa923ccc098fb28 255 SUPERFAMILY SSF52540 4 249 6.03E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12605 2f90d017ffc1dfd07aa923ccc098fb28 255 Gene3D G3DSA:3.40.50.300 2 254 1.3E-70 T 29-03-2018 Y880_RS12605 2f90d017ffc1dfd07aa923ccc098fb28 255 SMART SM00382 28 227 4.4E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS12605 2f90d017ffc1dfd07aa923ccc098fb28 255 Pfam PF00005 ABC transporter 19 179 1.7E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS07395 6dc069c6f12a27070bc121692eef751e 86 Pfam PF01809 Haemolytic domain 4 68 5.3E-31 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor Y880_RS07395 6dc069c6f12a27070bc121692eef751e 86 SMART SM01234 1 68 3.1E-48 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor Y880_RS07395 6dc069c6f12a27070bc121692eef751e 86 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 25.888 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor Y880_RS07395 6dc069c6f12a27070bc121692eef751e 86 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 74 2.5E-30 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor Y880_RS07395 6dc069c6f12a27070bc121692eef751e 86 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 3.0E-15 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor Y880_RS21205 3d4b6f937e6b2d962f925828b83181a5 162 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 6.6E-35 T 29-03-2018 IPR005134 Uncharacterised protein family UPF0114 Y880_RS21205 3d4b6f937e6b2d962f925828b83181a5 162 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 160 4.5E-74 T 29-03-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria Y880_RS21205 3d4b6f937e6b2d962f925828b83181a5 162 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 162 92.22 T 29-03-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria Y880_RS11890 27561b2973ff4c9f6a6cdb9cce02ed6d 306 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 16 277 9.1E-109 T 29-03-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y880_RS11890 27561b2973ff4c9f6a6cdb9cce02ed6d 306 Pfam PF11920 Protein of unknown function (DUF3438) 12 286 1.6E-120 T 29-03-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y880_RS04400 ec8cdbc833e756d36699ab3e1d6bdf7c 455 Pfam PF13520 Amino acid permease 15 423 5.0E-36 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS04400 ec8cdbc833e756d36699ab3e1d6bdf7c 455 PIRSF PIRSF006060 1 453 5.6E-56 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS29050 acc1b68e6cb2574afa815a0a45ba958c 172 Pfam PF08281 Sigma-70, region 4 111 163 2.5E-15 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29050 acc1b68e6cb2574afa815a0a45ba958c 172 Gene3D G3DSA:1.10.1740.10 6 71 2.3E-15 T 29-03-2018 Y880_RS29050 acc1b68e6cb2574afa815a0a45ba958c 172 SUPERFAMILY SSF88946 8 77 3.26E-13 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29050 acc1b68e6cb2574afa815a0a45ba958c 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 163 4.3E-21 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29050 acc1b68e6cb2574afa815a0a45ba958c 172 Pfam PF04542 Sigma-70 region 2 15 79 2.6E-13 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29050 acc1b68e6cb2574afa815a0a45ba958c 172 SUPERFAMILY SSF88659 89 167 1.29E-13 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS29050 acc1b68e6cb2574afa815a0a45ba958c 172 Gene3D G3DSA:1.10.10.10 72 168 4.3E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 Gene3D G3DSA:3.40.50.880 5 220 3.0E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 Gene3D G3DSA:3.30.300.10 401 525 1.7E-51 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 204 7.2E-77 T 29-03-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 Pfam PF02540 NAD synthase 219 291 3.3E-8 T 29-03-2018 IPR022310 NAD/GMP synthase Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 5.1E-7 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 5.1E-7 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 5.1E-7 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 55.92 T 29-03-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 SUPERFAMILY SSF52317 8 237 1.08E-53 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 Pfam PF00117 Glutamine amidotransferase class-I 12 200 5.2E-36 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 212 525 3.3E-149 T 29-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 Pfam PF00958 GMP synthase C terminal domain 433 524 9.1E-41 T 29-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 SUPERFAMILY SSF54810 405 525 3.4E-49 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 Gene3D G3DSA:3.40.50.620 221 400 1.9E-35 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 SUPERFAMILY SSF52402 197 420 9.7E-59 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 1.5E-5 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.5E-5 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.5E-5 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 8.8E-5 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 8.8E-5 T 29-03-2018 Y880_RS17045 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 8.8E-5 T 29-03-2018 Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 60 195 4.9E-25 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 50 9.7E-11 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 SUPERFAMILY SSF63867 210 281 5.36E-13 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 SMART SM00852 63 200 1.1E-35 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 Gene3D G3DSA:3.90.105.10 2 45 3.7E-18 T 29-03-2018 Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 Pfam PF00994 Probable molybdopterin binding domain 75 198 1.4E-22 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 SUPERFAMILY SSF63882 7 59 2.62E-13 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 Gene3D G3DSA:2.40.340.10 214 283 4.7E-13 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 SUPERFAMILY SSF53218 60 205 1.19E-38 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 Gene3D G3DSA:3.40.980.10 46 207 8.9E-50 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS17795 4b83e45b30a4cdfd1334892cbc39d1e0 285 Pfam PF03454 MoeA C-terminal region (domain IV) 214 280 8.9E-15 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS26975 0356ff352a9726422a039c655784cba8 239 SUPERFAMILY SSF52540 26 212 1.95E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26975 0356ff352a9726422a039c655784cba8 239 SMART SM00382 30 225 4.8E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS26975 0356ff352a9726422a039c655784cba8 239 Pfam PF00005 ABC transporter 26 176 1.1E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS26975 0356ff352a9726422a039c655784cba8 239 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS26975 0356ff352a9726422a039c655784cba8 239 Gene3D G3DSA:3.40.50.300 2 225 1.6E-43 T 29-03-2018 Y880_RS19535 3cab79791998fd7a72b4a131eb8f6227 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.891 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19535 3cab79791998fd7a72b4a131eb8f6227 63 Pfam PF00831 Ribosomal L29 protein 4 59 3.1E-23 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19535 3cab79791998fd7a72b4a131eb8f6227 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 29-03-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19535 3cab79791998fd7a72b4a131eb8f6227 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.3E-21 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19535 3cab79791998fd7a72b4a131eb8f6227 63 SUPERFAMILY SSF46561 1 61 1.44E-21 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19535 3cab79791998fd7a72b4a131eb8f6227 63 Gene3D G3DSA:1.10.287.310 1 63 4.0E-23 T 29-03-2018 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 36.436 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 SUPERFAMILY SSF54919 1 140 6.29E-59 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 SMART SM00562 3 140 1.8E-91 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.8E-41 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.8E-41 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.8E-41 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.8E-41 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.8E-41 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 Gene3D G3DSA:3.30.70.141 1 55 4.7E-18 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 Gene3D G3DSA:3.30.70.141 56 140 2.2E-36 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 29-03-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS17240 1a9506468d2b48dad3c71056d6f65686 143 Pfam PF00334 Nucleoside diphosphate kinase 4 137 5.3E-58 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 1.3E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 Gene3D G3DSA:3.40.50.2300 1 125 2.4E-35 T 29-03-2018 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 Gene3D G3DSA:1.10.10.10 126 211 1.1E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 5.3E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 5.3E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 5.3E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 SUPERFAMILY SSF52172 1 129 4.55E-34 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 SMART SM00421 145 202 3.6E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 Pfam PF00072 Response regulator receiver domain 3 115 6.3E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 SMART SM00448 1 114 2.5E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07060 70bfb6a2a578c25934189d564c5b352b 225 SUPERFAMILY SSF46894 142 208 1.12E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS12990 093caa195848d9a6f5173344849079dc 403 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 402 37.626 T 29-03-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 Y880_RS12990 093caa195848d9a6f5173344849079dc 403 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 398 1.0E-197 T 29-03-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 Y880_RS12990 093caa195848d9a6f5173344849079dc 403 Pfam PF03116 NQR2, RnfD, RnfE family 41 395 3.1E-110 T 29-03-2018 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 Y880_RS12990 093caa195848d9a6f5173344849079dc 403 PIRSF PIRSF016055 1 403 2.5E-204 T 29-03-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 Y880_RS25175 f01bde15287418f9c33519462185fcff 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS25175 f01bde15287418f9c33519462185fcff 497 SUPERFAMILY SSF53720 17 496 8.51E-167 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS25175 f01bde15287418f9c33519462185fcff 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS25175 f01bde15287418f9c33519462185fcff 497 Pfam PF00171 Aldehyde dehydrogenase family 32 492 2.0E-170 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS25175 f01bde15287418f9c33519462185fcff 497 Gene3D G3DSA:3.40.309.10 283 479 8.2E-73 T 29-03-2018 Y880_RS25175 f01bde15287418f9c33519462185fcff 497 Gene3D G3DSA:3.40.605.10 6 282 1.3E-93 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS01945 97f76e61c962b9e552ba76e52925b9ff 251 SMART SM00953 71 208 2.6E-36 T 29-03-2018 IPR014914 RES domain Y880_RS01945 97f76e61c962b9e552ba76e52925b9ff 251 Pfam PF08808 RES domain 63 207 3.7E-25 T 29-03-2018 IPR014914 RES domain Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 SMART SM00862 223 299 2.1E-13 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 Pfam PF00072 Response regulator receiver domain 81 187 3.1E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 Gene3D G3DSA:1.10.10.10 200 305 3.8E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 Gene3D G3DSA:3.40.50.2300 64 199 1.9E-34 T 29-03-2018 Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 SUPERFAMILY SSF52172 70 206 7.54E-36 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 Pfam PF00486 Transcriptional regulatory protein, C terminal 227 299 9.8E-17 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 SUPERFAMILY SSF46894 209 300 2.75E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS10865 48c6ea1ce1028409b1a139f6c367c7c1 305 SMART SM00448 78 188 5.2E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 Pfam PF01227 GTP cyclohydrolase I 6 182 6.4E-76 T 29-03-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 183 39.246 T 29-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 Gene3D G3DSA:1.10.286.10 3 51 2.0E-20 T 29-03-2018 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 62 78 - T 29-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 SUPERFAMILY SSF55620 5 183 8.89E-79 T 29-03-2018 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 6 183 1.4E-77 T 29-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 Gene3D G3DSA:3.30.1130.10 53 185 1.1E-63 T 29-03-2018 Y880_RS15300 bfdc28d6d607697c291964653a79df4a 186 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 110 120 - T 29-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 SUPERFAMILY SSF46689 9 76 4.14E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 Pfam PF13305 WHG domain 87 173 8.7E-8 T 29-03-2018 IPR025996 WHG domain Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 8.6E-16 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.5E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.5E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 SUPERFAMILY SSF48498 87 195 1.14E-9 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 Gene3D G3DSA:1.10.10.60 2 66 6.0E-18 T 29-03-2018 Y880_RS12775 0e71736700f26cd0b7393ffc6f605ef9 212 Gene3D G3DSA:1.10.357.10 67 198 3.9E-12 T 29-03-2018 Y880_RS01250 02e0b09d7dc26721f386b9129f22df9b 338 TIGRFAM TIGR03245 arg_AOST_alph: arginine/ornithine succinyltransferase, alpha subunit 3 338 7.1E-165 T 29-03-2018 IPR017651 Arginine/ornithine succinyltransferase, alpha subunit KEGG: 00330+2.3.1.109 Y880_RS01250 02e0b09d7dc26721f386b9129f22df9b 338 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 1.0E-132 T 29-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y880_RS01250 02e0b09d7dc26721f386b9129f22df9b 338 SUPERFAMILY SSF55729 1 337 1.85E-120 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS01250 02e0b09d7dc26721f386b9129f22df9b 338 Gene3D G3DSA:2.40.40.20 274 338 9.0E-24 T 29-03-2018 Y880_RS01250 02e0b09d7dc26721f386b9129f22df9b 338 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 336 8.0E-127 T 29-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y880_RS01250 02e0b09d7dc26721f386b9129f22df9b 338 Gene3D G3DSA:3.40.630.30 1 265 2.4E-10 T 29-03-2018 Y880_RS28480 1498ba0a39d0d2d4c278fe1124f9f889 476 Pfam PF00171 Aldehyde dehydrogenase family 17 445 4.0E-88 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS28480 1498ba0a39d0d2d4c278fe1124f9f889 476 PIRSF PIRSF036492 6 476 5.0E-168 T 29-03-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 Y880_RS28480 1498ba0a39d0d2d4c278fe1124f9f889 476 Gene3D G3DSA:3.40.605.10 5 240 2.0E-60 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS28480 1498ba0a39d0d2d4c278fe1124f9f889 476 SUPERFAMILY SSF53720 13 472 1.19E-119 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS28480 1498ba0a39d0d2d4c278fe1124f9f889 476 Gene3D G3DSA:3.40.309.10 241 426 1.6E-56 T 29-03-2018 Y880_RS28480 1498ba0a39d0d2d4c278fe1124f9f889 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 224 231 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS08290 6c2dc243e0dfb6515a0395da3881dda3 331 SUPERFAMILY SSF56529 112 316 9.01E-25 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS08290 6c2dc243e0dfb6515a0395da3881dda3 331 Gene3D G3DSA:3.90.850.10 90 321 9.4E-25 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS08290 6c2dc243e0dfb6515a0395da3881dda3 331 PIRSF PIRSF033905 1 331 1.9E-171 T 29-03-2018 IPR009645 Uncharacterised conserved protein GguC Y880_RS21445 967d02dd7bd4e8f442311cfc1215e111 323 Pfam PF13478 XdhC Rossmann domain 169 311 7.1E-35 T 29-03-2018 IPR027051 XdhC Rossmann domain Y880_RS21445 967d02dd7bd4e8f442311cfc1215e111 323 Pfam PF02625 XdhC and CoxI family 19 69 1.5E-13 T 29-03-2018 IPR003777 XdhC- CoxI Y880_RS21445 967d02dd7bd4e8f442311cfc1215e111 323 Gene3D G3DSA:3.40.50.720 164 310 6.1E-5 T 29-03-2018 Y880_RS08520 add71e19fda317a4d8457e6dc6b95397 442 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 48 285 1.3E-5 T 29-03-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 Y880_RS08520 add71e19fda317a4d8457e6dc6b95397 442 SUPERFAMILY SSF51445 43 358 3.1E-62 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS08520 add71e19fda317a4d8457e6dc6b95397 442 Gene3D G3DSA:3.20.20.80 40 358 1.5E-40 T 29-03-2018 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 Gene3D G3DSA:3.40.190.80 150 268 4.5E-30 T 29-03-2018 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 Gene3D G3DSA:3.30.540.10 7 149 7.9E-39 T 29-03-2018 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 29-03-2018 IPR020583 Inositol monophosphatase, metal-binding site Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 Pfam PF00459 Inositol monophosphatase family 10 244 2.2E-47 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 9 254 4.2E-85 T 29-03-2018 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 SUPERFAMILY SSF56655 9 268 9.69E-73 T 29-03-2018 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 1.5E-10 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 1.5E-10 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 1.5E-10 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS24465 a2a81880fab3785892f2ab504a76404b 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 1.5E-10 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 SUPERFAMILY SSF141868 146 389 1.03E-72 T 29-03-2018 IPR001633 EAL domain Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 Pfam PF00072 Response regulator receiver domain 6 120 4.0E-11 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 SMART SM00052 139 384 2.7E-70 T 29-03-2018 IPR001633 EAL domain Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 SUPERFAMILY SSF52172 1 182 6.55E-21 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 Gene3D G3DSA:3.40.50.2300 1 137 5.4E-20 T 29-03-2018 Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 Pfam PF00563 EAL domain 146 379 1.2E-63 T 29-03-2018 IPR001633 EAL domain Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 Gene3D G3DSA:3.20.20.450 143 391 1.1E-77 T 29-03-2018 IPR001633 EAL domain Y880_RS17975 4be8e675748b694d7dc4eaf2266c5d73 392 SMART SM00448 4 122 1.2E-9 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS12020 32beaaa9a8b6ddd28720d359f9149314 303 Gene3D G3DSA:3.40.190.10 179 265 2.6E-20 T 29-03-2018 Y880_RS12020 32beaaa9a8b6ddd28720d359f9149314 303 Gene3D G3DSA:1.10.10.10 1 85 6.1E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12020 32beaaa9a8b6ddd28720d359f9149314 303 SUPERFAMILY SSF53850 91 292 1.99E-36 T 29-03-2018 Y880_RS12020 32beaaa9a8b6ddd28720d359f9149314 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.1E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12020 32beaaa9a8b6ddd28720d359f9149314 303 SUPERFAMILY SSF46785 4 89 8.16E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12020 32beaaa9a8b6ddd28720d359f9149314 303 Pfam PF03466 LysR substrate binding domain 90 289 2.3E-35 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12020 32beaaa9a8b6ddd28720d359f9149314 303 Gene3D G3DSA:3.40.190.10 93 178 7.1E-15 T 29-03-2018 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 246 326 1.1E-9 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 549 689 6.3E-37 T 29-03-2018 IPR020992 Tail specific protease, C-terminal Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 Gene3D G3DSA:3.30.750.44 162 255 2.0E-24 T 29-03-2018 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 Gene3D G3DSA:3.90.226.10 354 661 1.8E-54 T 29-03-2018 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 SMART SM00245 336 545 3.1E-56 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 210 565 3.5E-96 T 29-03-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 SUPERFAMILY SSF52096 188 271 2.15E-69 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 SUPERFAMILY SSF52096 364 549 2.15E-69 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 Gene3D G3DSA:2.30.42.10 256 353 3.0E-11 T 29-03-2018 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 SUPERFAMILY SSF50156 244 328 3.84E-9 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 SMART SM00228 253 330 6.7E-5 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS14310 1abbcb865a7dd83b3876b7af544b7b5e 698 Pfam PF03572 Peptidase family S41 370 543 3.6E-51 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y880_RS15520 d5a971f4eef2d5501b7f829e0fd984b9 295 SUPERFAMILY SSF53474 206 274 1.08E-40 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS15520 d5a971f4eef2d5501b7f829e0fd984b9 295 SUPERFAMILY SSF53474 8 175 1.08E-40 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS15520 d5a971f4eef2d5501b7f829e0fd984b9 295 Pfam PF00561 alpha/beta hydrolase fold 30 252 6.4E-7 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS15520 d5a971f4eef2d5501b7f829e0fd984b9 295 Gene3D G3DSA:3.40.50.1820 4 274 2.1E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS15320 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 7 69 2.1E-18 T 29-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 Y880_RS15320 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 Pfam PF03459 TOBE domain 8 67 3.8E-16 T 29-03-2018 IPR005116 Transport-associated OB, type 1 Y880_RS15320 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 SUPERFAMILY SSF50331 6 69 3.16E-16 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS15320 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 Gene3D G3DSA:2.40.50.100 5 70 7.7E-17 T 29-03-2018 Y880_RS15425 0678df4490dc2a64903bf5d86c525e69 398 SUPERFAMILY SSF101821 78 190 1.1E-24 T 29-03-2018 Y880_RS15425 0678df4490dc2a64903bf5d86c525e69 398 TIGRFAM TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family 8 349 1.8E-171 T 29-03-2018 IPR017537 Peptidase M42, hydrolase Y880_RS15425 0678df4490dc2a64903bf5d86c525e69 398 Pfam PF05343 M42 glutamyl aminopeptidase 53 341 8.9E-74 T 29-03-2018 IPR008007 Peptidase M42 Y880_RS15425 0678df4490dc2a64903bf5d86c525e69 398 Gene3D G3DSA:3.40.630.10 6 348 1.6E-38 T 29-03-2018 Y880_RS15425 0678df4490dc2a64903bf5d86c525e69 398 SUPERFAMILY SSF53187 13 88 1.37E-44 T 29-03-2018 Y880_RS15425 0678df4490dc2a64903bf5d86c525e69 398 SUPERFAMILY SSF53187 182 348 1.37E-44 T 29-03-2018 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 9 313 3.7E-120 T 29-03-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 Gene3D G3DSA:3.50.50.60 3 135 1.2E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 SUPERFAMILY SSF51905 2 313 3.39E-56 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 5.5E-42 T 29-03-2018 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 5.5E-42 T 29-03-2018 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 5.5E-42 T 29-03-2018 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 5.5E-42 T 29-03-2018 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 5.5E-42 T 29-03-2018 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 200 216 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 42 57 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 63 73 1.1E-76 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 Gene3D G3DSA:3.50.50.60 263 316 7.7E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 Gene3D G3DSA:3.40.50.720 137 262 3.1E-24 T 29-03-2018 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 137 157 - T 29-03-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Y880_RS00995 df6b48baf5aa47b2c70345eb137e35d1 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 301 1.2E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25925 d572201a9351bc9af336f8f67790426b 421 Pfam PF00005 ABC transporter 41 173 2.7E-20 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS25925 d572201a9351bc9af336f8f67790426b 421 SMART SM00382 50 239 1.6E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS25925 d572201a9351bc9af336f8f67790426b 421 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS25925 d572201a9351bc9af336f8f67790426b 421 Pfam PF14524 Wzt C-terminal domain 260 398 2.0E-33 T 29-03-2018 IPR029439 Wzt, C-terminal Y880_RS25925 d572201a9351bc9af336f8f67790426b 421 Gene3D G3DSA:3.40.50.300 1 258 6.8E-47 T 29-03-2018 Y880_RS25925 d572201a9351bc9af336f8f67790426b 421 SUPERFAMILY SSF52540 38 237 9.3E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS25925 d572201a9351bc9af336f8f67790426b 421 Gene3D G3DSA:2.70.50.60 259 396 1.2E-33 T 29-03-2018 Y880_RS12610 8e614dcca71103f3a4d3651d65868327 64 Gene3D G3DSA:3.40.630.30 1 60 2.3E-9 T 29-03-2018 Y880_RS12610 8e614dcca71103f3a4d3651d65868327 64 SUPERFAMILY SSF55729 1 60 6.83E-8 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS24845 883a3b2e7789208eb4f090bf28567137 633 SUPERFAMILY SSF46626 119 223 3.58E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS24845 883a3b2e7789208eb4f090bf28567137 633 Gene3D G3DSA:1.10.760.10 104 259 1.0E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS24845 883a3b2e7789208eb4f090bf28567137 633 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 130 213 1.3E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS24845 883a3b2e7789208eb4f090bf28567137 633 Pfam PF03239 Iron permease FTR1 family 342 475 3.0E-12 T 29-03-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 Y880_RS05365 d7e0343a1c710ccbe3e7520022a653e4 335 Pfam PF06996 Type VI secretion, TssG 20 320 1.2E-88 T 29-03-2018 IPR010732 Type VI secretion, TssG-like Y880_RS05365 d7e0343a1c710ccbe3e7520022a653e4 335 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 20 320 3.5E-97 T 29-03-2018 IPR010732 Type VI secretion, TssG-like Y880_RS15160 9b2e82534227e4b1fb69443ba4f953b3 171 Pfam PF08281 Sigma-70, region 4 112 162 2.0E-18 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS15160 9b2e82534227e4b1fb69443ba4f953b3 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 166 9.2E-27 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS15160 9b2e82534227e4b1fb69443ba4f953b3 171 Gene3D G3DSA:1.10.10.10 77 170 3.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15160 9b2e82534227e4b1fb69443ba4f953b3 171 Pfam PF04542 Sigma-70 region 2 13 80 2.8E-13 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS15160 9b2e82534227e4b1fb69443ba4f953b3 171 SUPERFAMILY SSF88946 8 85 4.71E-17 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS15160 9b2e82534227e4b1fb69443ba4f953b3 171 SUPERFAMILY SSF88659 96 169 4.58E-15 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS15160 9b2e82534227e4b1fb69443ba4f953b3 171 Gene3D G3DSA:1.10.1740.10 5 76 7.5E-17 T 29-03-2018 Y880_RS28580 207860e2caf7f3dc590ed15c4db8b659 107 Pfam PF11872 Protein of unknown function (DUF3392) 5 106 4.0E-41 T 29-03-2018 IPR021813 Protein of unknown function DUF3392 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 SUPERFAMILY SSF56645 68 290 9.82E-45 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 Gene3D G3DSA:1.10.540.10 57 187 3.0E-23 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 SUPERFAMILY SSF47203 298 425 1.22E-37 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 73 186 1.4E-18 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 397 416 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 Gene3D G3DSA:2.40.110.10 191 282 4.9E-19 T 29-03-2018 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 Gene3D G3DSA:1.20.140.10 283 426 4.7E-36 T 29-03-2018 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 299 425 1.2E-30 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS23510 fae4d00a4e1bea31ef6402f15cd5aaf5 429 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 192 281 5.4E-10 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS27615 033b3c74cad946c5656ad63b2f3071e9 239 Pfam PF01618 MotA/TolQ/ExbB proton channel family 72 199 1.7E-37 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 351 373 4.9E-5 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 77 97 4.9E-5 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 256 278 4.9E-5 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF00361 Proton-conducting membrane transporter 126 401 1.9E-64 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 60 113 2.3E-11 T 29-03-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF13244 Domain of unknown function (DUF4040) 611 674 1.7E-17 T 29-03-2018 IPR025383 Domain of unknown function DUF4040 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 788 911 3.3E-37 T 29-03-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 8.6E-38 T 29-03-2018 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 8.6E-38 T 29-03-2018 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 8.6E-38 T 29-03-2018 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 8.6E-38 T 29-03-2018 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 8.6E-38 T 29-03-2018 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 8.6E-38 T 29-03-2018 Y880_RS02070 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 8.6E-38 T 29-03-2018 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 29-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 SUPERFAMILY SSF54713 143 284 6.41E-49 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 Gene3D G3DSA:3.30.479.20 150 283 3.0E-45 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 284 1.2E-95 T 29-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 29-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 Pfam PF00889 Elongation factor TS 73 267 7.1E-59 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 SUPERFAMILY SSF54713 56 141 6.21E-14 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 Gene3D G3DSA:3.30.479.20 58 149 9.2E-10 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 Gene3D G3DSA:1.10.8.10 1 56 4.3E-21 T 29-03-2018 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 SUPERFAMILY SSF46934 3 56 2.35E-16 T 29-03-2018 IPR009060 UBA-like GO:0005515 Y880_RS16430 0e61d3c224c2e4355dcfb03a9ba40d2f 289 Hamap MF_00050 Elongation factor Ts [tsf]. 1 284 72.415 T 29-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 SUPERFAMILY SSF50249 3 123 1.11E-50 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 Gene3D G3DSA:2.40.50.140 1 123 3.9E-63 T 29-03-2018 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 PIRSF PIRSF002133 1 123 2.1E-52 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.0E-69 T 29-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.797 T 29-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 Pfam PF00164 Ribosomal protein S12/S23 12 123 9.8E-42 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 4.0E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 4.0E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 4.0E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 4.0E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 4.0E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19595 ffce43992e90adfd36f589d23c85ca27 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 4.0E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 Gene3D G3DSA:1.10.10.10 2 87 1.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.2E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 Gene3D G3DSA:3.40.190.10 90 180 3.4E-16 T 29-03-2018 Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 Gene3D G3DSA:3.40.190.10 181 271 1.3E-18 T 29-03-2018 Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 Pfam PF03466 LysR substrate binding domain 91 298 4.5E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 SUPERFAMILY SSF46785 4 109 7.57E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17090 fdbf1628a0c2432a839b7a181f7baed6 311 SUPERFAMILY SSF53850 93 299 3.74E-33 T 29-03-2018 Y880_RS15775 5c8ef765ad5c66bface3ed11e13b9779 383 SUPERFAMILY SSF103473 11 381 2.88E-39 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS15775 5c8ef765ad5c66bface3ed11e13b9779 383 Gene3D G3DSA:1.20.1250.20 198 379 4.8E-14 T 29-03-2018 Y880_RS15775 5c8ef765ad5c66bface3ed11e13b9779 383 Gene3D G3DSA:1.20.1250.20 5 193 1.8E-16 T 29-03-2018 Y880_RS15775 5c8ef765ad5c66bface3ed11e13b9779 383 Pfam PF07690 Major Facilitator Superfamily 14 318 5.8E-18 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS15690 619bb603c8d275e187d32b7d42d3e8ab 357 Gene3D G3DSA:3.40.50.150 141 355 1.3E-31 T 29-03-2018 Y880_RS15690 619bb603c8d275e187d32b7d42d3e8ab 357 Gene3D G3DSA:1.10.10.10 11 107 1.3E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15690 619bb603c8d275e187d32b7d42d3e8ab 357 SUPERFAMILY SSF53335 151 348 2.28E-35 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS15690 619bb603c8d275e187d32b7d42d3e8ab 357 Pfam PF13847 Methyltransferase domain 176 334 1.4E-21 T 29-03-2018 IPR025714 Methyltransferase domain Y880_RS15690 619bb603c8d275e187d32b7d42d3e8ab 357 SUPERFAMILY SSF46785 27 91 9.42E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 Pfam PF08402 TOBE domain 286 363 4.2E-17 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 Gene3D G3DSA:3.40.50.300 7 251 4.5E-74 T 29-03-2018 Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 Gene3D G3DSA:2.40.50.140 289 355 9.3E-5 T 29-03-2018 Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 SMART SM00382 36 219 3.3E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 Pfam PF00005 ABC transporter 28 169 7.4E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 SUPERFAMILY SSF50331 244 363 3.63E-18 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 SUPERFAMILY SSF52540 10 249 2.18E-87 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS29725 d3cb68fb7466420bafe7fe411679b13b 369 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 42 361 2.9E-115 T 29-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y880_RS10955 b7904277f0329ded0a7a2e6925da178e 339 SUPERFAMILY SSF46689 291 338 2.9E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS10955 b7904277f0329ded0a7a2e6925da178e 339 SMART SM00342 256 338 4.0E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS10955 b7904277f0329ded0a7a2e6925da178e 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 29 213 5.0E-44 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS10955 b7904277f0329ded0a7a2e6925da178e 339 Pfam PF12833 Helix-turn-helix domain 262 339 2.7E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS10955 b7904277f0329ded0a7a2e6925da178e 339 Gene3D G3DSA:1.10.10.60 235 289 1.9E-4 T 29-03-2018 Y880_RS10955 b7904277f0329ded0a7a2e6925da178e 339 Gene3D G3DSA:1.10.10.60 290 339 5.2E-10 T 29-03-2018 Y880_RS01295 fa9b8186011d8703acefd188d493bd6d 61 Pfam PF02599 Global regulator protein family 1 53 9.1E-27 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Y880_RS01295 fa9b8186011d8703acefd188d493bd6d 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-11 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Y880_RS01295 fa9b8186011d8703acefd188d493bd6d 61 Hamap MF_00167 Carbon storage regulator [csrA]. 1 61 20.924 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Y880_RS01295 fa9b8186011d8703acefd188d493bd6d 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 57 1.6E-30 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Y880_RS01295 fa9b8186011d8703acefd188d493bd6d 61 SUPERFAMILY SSF117130 1 54 5.49E-21 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Y880_RS01500 a59a9dd5bbf78e07346a951af5daf79f 84 Pfam PF09630 Domain of unknown function (DUF2024) 1 80 7.1E-30 T 29-03-2018 IPR018592 Protein of unknown function DUF2024 Y880_RS01500 a59a9dd5bbf78e07346a951af5daf79f 84 SUPERFAMILY SSF160766 1 84 2.35E-32 T 29-03-2018 IPR023122 NE1680-like domain Y880_RS01500 a59a9dd5bbf78e07346a951af5daf79f 84 Gene3D G3DSA:3.10.510.10 1 84 1.3E-28 T 29-03-2018 IPR023122 NE1680-like domain Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 PIRSF PIRSF004749 1 172 4.6E-47 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 111 129 1.5E-31 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 130 159 1.5E-31 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 99 110 1.5E-31 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 35 64 1.5E-31 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 SUPERFAMILY SSF56420 1 167 3.4E-57 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 8.1E-35 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 Gene3D G3DSA:3.90.45.10 1 169 1.5E-53 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 Pfam PF01327 Polypeptide deformylase 3 160 3.8E-47 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS02485 ba296b9bb8ae459bc205d02f8ba8905c 179 Hamap MF_00163 Peptide deformylase [def]. 1 172 27.724 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 SUPERFAMILY SSF53850 92 300 1.71E-37 T 29-03-2018 Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 SUPERFAMILY SSF46785 8 115 1.36E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 8.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 8.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 8.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 3.4E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 Gene3D G3DSA:3.40.190.10 95 181 2.1E-12 T 29-03-2018 Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 Gene3D G3DSA:1.10.10.10 2 87 2.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 Gene3D G3DSA:3.40.190.10 182 269 6.6E-25 T 29-03-2018 Y880_RS03540 107c28fdf0f452f0ba10db20b7e72956 302 Pfam PF03466 LysR substrate binding domain 91 298 5.6E-36 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS14140 a277d51826afe704fc823b42547c885d 213 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.655 T 29-03-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 Y880_RS14140 a277d51826afe704fc823b42547c885d 213 Gene3D G3DSA:3.40.50.360 3 206 7.3E-45 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS14140 a277d51826afe704fc823b42547c885d 213 Pfam PF02525 Flavodoxin-like fold 3 198 2.8E-49 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS14140 a277d51826afe704fc823b42547c885d 213 SUPERFAMILY SSF52218 1 199 3.67E-58 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS19550 d9dac43286d48fa21d0b5cdb26095755 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 2.9E-37 T 29-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Y880_RS19550 d9dac43286d48fa21d0b5cdb26095755 110 Gene3D G3DSA:3.90.470.10 1 110 2.8E-42 T 29-03-2018 Y880_RS19550 d9dac43286d48fa21d0b5cdb26095755 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 8.9E-45 T 29-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19550 d9dac43286d48fa21d0b5cdb26095755 110 SUPERFAMILY SSF54843 1 109 6.8E-42 T 29-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Y880_RS19550 d9dac43286d48fa21d0b5cdb26095755 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 29-03-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19550 d9dac43286d48fa21d0b5cdb26095755 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 27.804 T 29-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS18015 c2f3fb7b4c7bb88d2148c24877fc460c 364 Pfam PF00296 Luciferase-like monooxygenase 9 328 3.5E-78 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS18015 c2f3fb7b4c7bb88d2148c24877fc460c 364 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 8 356 1.6E-193 T 29-03-2018 IPR024014 Dimethyl sulphone monooxygenase SfnG Y880_RS18015 c2f3fb7b4c7bb88d2148c24877fc460c 364 SUPERFAMILY SSF51679 5 355 1.14E-94 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS18015 c2f3fb7b4c7bb88d2148c24877fc460c 364 Gene3D G3DSA:3.20.20.30 4 361 1.0E-82 T 29-03-2018 Y880_RS23900 220f9db024411c491c35c7a95727a011 82 Pfam PF02416 mttA/Hcf106 family 6 52 2.9E-14 T 29-03-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Y880_RS23900 220f9db024411c491c35c7a95727a011 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 5.8E-22 T 29-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Y880_RS23900 220f9db024411c491c35c7a95727a011 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 81 22.946 T 29-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 64 155 4.4E-25 T 29-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 Gene3D G3DSA:1.10.150.20 244 327 1.1E-28 T 29-03-2018 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 227 1.1E-23 T 29-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 SMART SM00662 23 233 2.2E-109 T 29-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 315 7.3E-110 T 29-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 316 35.081 T 29-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 SUPERFAMILY SSF55257 6 53 4.51E-30 T 29-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 SUPERFAMILY SSF55257 178 232 4.51E-30 T 29-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 243 307 3.3E-24 T 29-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 328 1.0E-36 T 29-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 Gene3D G3DSA:3.30.1360.10 4 92 9.1E-18 T 29-03-2018 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 Gene3D G3DSA:3.30.1360.10 111 230 1.2E-27 T 29-03-2018 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 SUPERFAMILY SSF56553 53 177 7.59E-42 T 29-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y880_RS19450 d59065b8ad2b988fdb7db42eafde225b 333 SUPERFAMILY SSF47789 250 323 8.89E-26 T 29-03-2018 Y880_RS27250 af5c54ae48a57f40bf7dc2f3759b7e3a 166 Pfam PF03168 Late embryogenesis abundant protein 54 146 1.3E-21 T 29-03-2018 IPR004864 Late embryogenesis abundant protein, LEA-14 Y880_RS27250 af5c54ae48a57f40bf7dc2f3759b7e3a 166 SUPERFAMILY SSF117070 12 153 1.02E-30 T 29-03-2018 Y880_RS27250 af5c54ae48a57f40bf7dc2f3759b7e3a 166 Gene3D G3DSA:2.60.40.10 32 147 3.7E-15 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS27250 af5c54ae48a57f40bf7dc2f3759b7e3a 166 SMART SM00769 34 154 2.0E-46 T 29-03-2018 IPR013990 Water stress and hypersensitive response domain GO:0009269 Y880_RS01265 d4b2485a238fd87251e652b370711864 448 Pfam PF04996 Succinylarginine dihydrolase 3 446 3.3E-225 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y880_RS01265 d4b2485a238fd87251e652b370711864 448 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 447 60.684 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y880_RS01265 d4b2485a238fd87251e652b370711864 448 Gene3D G3DSA:3.75.10.20 2 447 3.9E-223 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y880_RS01265 d4b2485a238fd87251e652b370711864 448 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 446 4.4E-248 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y880_RS01265 d4b2485a238fd87251e652b370711864 448 SUPERFAMILY SSF55909 3 446 6.38E-207 T 29-03-2018 Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 SUPERFAMILY SSF56176 497 569 3.54E-8 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 574 51.571 T 29-03-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 Pfam PF00999 Sodium/hydrogen exchanger family 15 386 1.2E-56 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 Gene3D G3DSA:3.30.465.10 495 568 9.0E-9 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 SMART SM01091 492 571 1.3E-12 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 Pfam PF03471 Transporter associated domain 495 569 1.4E-10 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 Pfam PF02080 TrkA-C domain 418 483 2.3E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 SUPERFAMILY SSF116726 411 483 3.53E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS23660 909f25304f31d6d4a4b5551c445217d2 580 Gene3D G3DSA:3.30.70.1450 413 489 2.5E-12 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS29655 2f92f35296d9c4fc1df9d0feb1dd0e51 110 SUPERFAMILY SSF52821 3 101 5.37E-28 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS29655 2f92f35296d9c4fc1df9d0feb1dd0e51 110 Gene3D G3DSA:3.40.250.10 2 108 3.5E-26 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS29655 2f92f35296d9c4fc1df9d0feb1dd0e51 110 Pfam PF00581 Rhodanese-like domain 10 97 2.5E-16 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS29655 2f92f35296d9c4fc1df9d0feb1dd0e51 110 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 3 105 30.086 T 29-03-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 Y880_RS29655 2f92f35296d9c4fc1df9d0feb1dd0e51 110 SMART SM00450 8 102 2.5E-20 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS05220 9d49fc409bb18299c41509edc80ad86d 183 PIRSF PIRSF001296 1 183 9.7E-64 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y880_RS05220 9d49fc409bb18299c41509edc80ad86d 183 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 181 32.706 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y880_RS05220 9d49fc409bb18299c41509edc80ad86d 183 Pfam PF02669 K+-transporting ATPase, c chain 6 178 2.3E-61 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y880_RS05220 9d49fc409bb18299c41509edc80ad86d 183 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 3 178 1.9E-56 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y880_RS05540 4b32782ce5c327c9caa3f9274a97fb3c 130 Pfam PF02120 Flagellar hook-length control protein FliK 33 115 7.5E-10 T 29-03-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Y880_RS05540 4b32782ce5c327c9caa3f9274a97fb3c 130 TIGRFAM TIGR02514 type_III_yscP: type III secretion system needle length determinant 5 130 8.1E-45 T 29-03-2018 IPR013354 Type III secretion system needle length determinant, C-terminal domain GO:0009405 Y880_RS18930 66e1210131dab05d62a945e76666c137 402 Gene3D G3DSA:1.20.1250.20 14 196 4.8E-34 T 29-03-2018 Y880_RS18930 66e1210131dab05d62a945e76666c137 402 Pfam PF07690 Major Facilitator Superfamily 25 351 2.3E-40 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS18930 66e1210131dab05d62a945e76666c137 402 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 16 392 2.2E-93 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 Y880_RS18930 66e1210131dab05d62a945e76666c137 402 Gene3D G3DSA:1.20.1250.20 208 398 7.4E-14 T 29-03-2018 Y880_RS18930 66e1210131dab05d62a945e76666c137 402 SUPERFAMILY SSF103473 10 397 2.09E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF81271 375 447 1.72E-22 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 Pfam PF13291 ACT domain 622 698 1.5E-15 T 29-03-2018 IPR002912 ACT domain Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 SMART SM00954 235 345 1.2E-64 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 Gene3D G3DSA:3.30.70.260 621 701 5.6E-10 T 29-03-2018 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 Gene3D G3DSA:3.10.20.30 382 457 9.5E-24 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 Gene3D G3DSA:3.30.460.10 193 325 6.5E-41 T 29-03-2018 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 3.1E-37 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF81301 181 392 1.36E-61 T 29-03-2018 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF109604 6 191 1.44E-70 T 29-03-2018 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 697 4.8E-245 T 29-03-2018 IPR004811 RelA/SpoT family GO:0015969 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF55021 624 699 1.93E-7 T 29-03-2018 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 Pfam PF02824 TGS domain 388 447 3.8E-19 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 SMART SM00471 41 153 6.0E-8 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS25310 a5040bc72332d751d79564b8946a21be 701 Pfam PF13328 HD domain 26 175 1.1E-51 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 SUPERFAMILY SSF53850 87 297 4.52E-31 T 29-03-2018 Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 Pfam PF03466 LysR substrate binding domain 95 293 1.0E-26 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 4.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 4.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 Gene3D G3DSA:3.40.190.10 95 176 4.9E-12 T 29-03-2018 Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 Gene3D G3DSA:1.10.10.10 5 91 2.6E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 SUPERFAMILY SSF46785 6 90 3.49E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 Gene3D G3DSA:3.40.190.10 177 263 9.1E-9 T 29-03-2018 Y880_RS00535 0eea557ea88ffd8d7d695ae6e5f87e32 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 1.6E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16070 1bdadb5c58320861ae621589f79070a9 109 Pfam PF06942 GlpM protein 2 108 1.2E-48 T 29-03-2018 IPR009707 Membrane protein GlpM/YdgC Y880_RS16070 1bdadb5c58320861ae621589f79070a9 109 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 18 84 5.0E-26 T 29-03-2018 IPR009707 Membrane protein GlpM/YdgC Y880_RS00330 074cd33b68bf7ade379511db8f2e0145 367 Pfam PF16113 Enoyl-CoA hydratase/isomerase 16 354 1.4E-110 T 29-03-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 Y880_RS00330 074cd33b68bf7ade379511db8f2e0145 367 Gene3D G3DSA:3.90.226.10 6 348 3.9E-78 T 29-03-2018 Y880_RS00330 074cd33b68bf7ade379511db8f2e0145 367 SUPERFAMILY SSF52096 264 340 9.29E-59 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS00330 074cd33b68bf7ade379511db8f2e0145 367 SUPERFAMILY SSF52096 15 193 9.29E-59 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 SUPERFAMILY SSF53067 143 317 1.07E-44 T 29-03-2018 Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 Gene3D G3DSA:3.30.420.150 131 311 1.3E-35 T 29-03-2018 Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 17 312 3.3E-102 T 29-03-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 Pfam PF02541 Ppx/GppA phosphatase family 37 315 6.2E-77 T 29-03-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 SUPERFAMILY SSF53067 17 139 1.1E-34 T 29-03-2018 Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 SUPERFAMILY SSF109604 319 505 7.53E-50 T 29-03-2018 Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 Gene3D G3DSA:3.30.420.40 2 130 1.0E-39 T 29-03-2018 Y880_RS24810 634e79d083605fe0667242f363abbaf8 506 PIRSF PIRSF001267 6 506 1.0E-199 T 29-03-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 Y880_RS21645 bad9c1d3452d43362def4aacd157dae9 340 Gene3D G3DSA:3.40.50.1400 1 169 7.2E-37 T 29-03-2018 Y880_RS21645 bad9c1d3452d43362def4aacd157dae9 340 Gene3D G3DSA:3.40.50.1400 170 315 1.9E-37 T 29-03-2018 Y880_RS21645 bad9c1d3452d43362def4aacd157dae9 340 Pfam PF00762 Ferrochelatase 4 332 7.9E-99 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Y880_RS21645 bad9c1d3452d43362def4aacd157dae9 340 SUPERFAMILY SSF53800 3 335 3.53E-87 T 29-03-2018 Y880_RS21645 bad9c1d3452d43362def4aacd157dae9 340 Hamap MF_00323 Ferrochelatase [hemH]. 2 337 35.69 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Y880_RS21645 bad9c1d3452d43362def4aacd157dae9 340 TIGRFAM TIGR00109 hemH: ferrochelatase 3 197 9.1E-39 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 SMART SM00304 171 224 2.2E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 SMART SM00388 225 291 1.8E-17 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 SUPERFAMILY SSF47384 208 291 9.61E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 SUPERFAMILY SSF158472 175 222 4.18E-5 T 29-03-2018 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 SMART SM00387 334 442 8.8E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 Gene3D G3DSA:3.30.565.10 296 443 2.4E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 1.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 1.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 1.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 226 291 2.1E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 334 436 4.5E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 8 438 4.8E-169 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 SUPERFAMILY SSF55874 280 438 7.99E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS11590 94125f354e6bfdacb108f62b96e88b59 443 Gene3D G3DSA:1.10.287.130 215 287 3.7E-15 T 29-03-2018 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 371 2.7E-106 T 29-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 386 483 7.1E-36 T 29-03-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 SUPERFAMILY SSF52821 397 482 5.63E-8 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 SUPERFAMILY SSF52402 181 374 2.14E-38 T 29-03-2018 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 SUPERFAMILY SSF143437 1 175 3.84E-48 T 29-03-2018 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 Gene3D G3DSA:3.30.2300.10 87 165 1.4E-18 T 29-03-2018 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 178 370 1.8E-64 T 29-03-2018 IPR020536 Thil, AANH domain GO:0004810 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 Gene3D G3DSA:3.40.250.10 407 483 2.8E-8 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 Pfam PF02926 THUMP domain 29 166 1.6E-21 T 29-03-2018 IPR004114 THUMP domain GO:0003723 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 SMART SM00981 77 167 5.1E-24 T 29-03-2018 IPR004114 THUMP domain GO:0003723 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 Gene3D G3DSA:3.40.50.620 177 406 1.6E-23 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 Gene3D G3DSA:3.30.70.1510 2 84 3.5E-21 T 29-03-2018 Y880_RS24150 cedf7a59f054c94731e0f52886c92b46 484 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 484 206.371 T 29-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 Y880_RS17635 1e71be8ba464bf47720a1fddbbb9e024 218 Pfam PF03162 Tyrosine phosphatase family 51 163 2.0E-9 T 29-03-2018 IPR004861 Protein-tyrosine phosphatase, SIW14-like Y880_RS17635 1e71be8ba464bf47720a1fddbbb9e024 218 Gene3D G3DSA:3.90.190.10 33 167 2.6E-24 T 29-03-2018 IPR029021 Protein-tyrosine phosphatase-like Y880_RS17635 1e71be8ba464bf47720a1fddbbb9e024 218 SUPERFAMILY SSF52799 44 164 2.86E-23 T 29-03-2018 IPR029021 Protein-tyrosine phosphatase-like Y880_RS17635 1e71be8ba464bf47720a1fddbbb9e024 218 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 130 140 - T 29-03-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 Y880_RS02600 afcdc41b3b974a8fd3b6647dfd5e54a2 444 Pfam PF07690 Major Facilitator Superfamily 27 387 4.1E-42 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS02600 afcdc41b3b974a8fd3b6647dfd5e54a2 444 PIRSF PIRSF002808 5 435 3.3E-80 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 Y880_RS02600 afcdc41b3b974a8fd3b6647dfd5e54a2 444 SUPERFAMILY SSF103473 14 422 1.57E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS02600 afcdc41b3b974a8fd3b6647dfd5e54a2 444 Gene3D G3DSA:1.20.1250.20 12 211 3.4E-26 T 29-03-2018 Y880_RS02600 afcdc41b3b974a8fd3b6647dfd5e54a2 444 Gene3D G3DSA:1.20.1250.20 226 434 4.2E-21 T 29-03-2018 Y880_RS07510 a0a5dc25eb2dc99698745b902e896af3 387 SUPERFAMILY SSF103473 2 374 4.45E-43 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS07510 a0a5dc25eb2dc99698745b902e896af3 387 PIRSF PIRSF004925 1 384 8.8E-116 T 29-03-2018 IPR026032 Probable 3-phenylpropionic acid transporter Y880_RS07510 a0a5dc25eb2dc99698745b902e896af3 387 Gene3D G3DSA:1.20.1250.20 1 179 2.5E-14 T 29-03-2018 Y880_RS07510 a0a5dc25eb2dc99698745b902e896af3 387 Gene3D G3DSA:1.20.1250.20 186 380 1.5E-19 T 29-03-2018 Y880_RS07510 a0a5dc25eb2dc99698745b902e896af3 387 Pfam PF12832 MFS_1 like family 8 347 1.4E-38 T 29-03-2018 IPR024989 Major facilitator superfamily associated domain Y880_RS29105 74bd31227d9e8b188a1de4c17a0967dc 147 SUPERFAMILY SSF55729 3 145 5.66E-33 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS29105 74bd31227d9e8b188a1de4c17a0967dc 147 Pfam PF00583 Acetyltransferase (GNAT) family 18 134 1.3E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS29105 74bd31227d9e8b188a1de4c17a0967dc 147 Gene3D G3DSA:3.40.630.30 1 146 2.0E-28 T 29-03-2018 Y880_RS08650 c209027b3bc9711ccd3017c047a9cee8 435 SUPERFAMILY SSF103473 5 417 5.23E-86 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS08650 c209027b3bc9711ccd3017c047a9cee8 435 Gene3D G3DSA:1.20.1250.20 221 425 5.6E-34 T 29-03-2018 Y880_RS08650 c209027b3bc9711ccd3017c047a9cee8 435 Gene3D G3DSA:1.20.1250.20 2 207 2.9E-32 T 29-03-2018 Y880_RS08650 c209027b3bc9711ccd3017c047a9cee8 435 Pfam PF07690 Major Facilitator Superfamily 18 375 3.4E-56 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS08650 c209027b3bc9711ccd3017c047a9cee8 435 PIRSF PIRSF002808 3 428 1.6E-35 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 SUPERFAMILY SSF51735 1 259 9.94E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 Gene3D G3DSA:3.40.50.720 1 260 2.2E-57 T 29-03-2018 Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 259 1.7E-41 T 29-03-2018 Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.1E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.1E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.1E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.7E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.7E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.7E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.7E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.7E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS03630 8326de59fd1d05c54580ab0431913f39 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.7E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS11005 3f87a0c02dc9767b0fbb641792e5c61b 159 Pfam PF01638 HxlR-like helix-turn-helix 19 106 7.4E-25 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type Y880_RS11005 3f87a0c02dc9767b0fbb641792e5c61b 159 Gene3D G3DSA:1.10.10.10 1 158 4.7E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11005 3f87a0c02dc9767b0fbb641792e5c61b 159 SUPERFAMILY SSF46785 7 145 2.55E-44 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07425 00290bbd29c50d596cf4c16f6732fd9e 317 Pfam PF16220 Domain of unknown function (DUF4880) 11 50 4.2E-12 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS07425 00290bbd29c50d596cf4c16f6732fd9e 317 Pfam PF04773 FecR protein 114 205 2.6E-21 T 29-03-2018 IPR006860 FecR protein Y880_RS07425 00290bbd29c50d596cf4c16f6732fd9e 317 PIRSF PIRSF018266 1 317 7.2E-84 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS22130 ff955beb97bbcfa014c4ffa2e035b0d3 283 Gene3D G3DSA:3.30.1300.10 177 283 4.5E-30 T 29-03-2018 Y880_RS22130 ff955beb97bbcfa014c4ffa2e035b0d3 283 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 41.388 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y880_RS22130 ff955beb97bbcfa014c4ffa2e035b0d3 283 SUPERFAMILY SSF52374 1 281 2.36E-106 T 29-03-2018 Y880_RS22130 ff955beb97bbcfa014c4ffa2e035b0d3 283 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 2.2E-102 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y880_RS22130 ff955beb97bbcfa014c4ffa2e035b0d3 283 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 1.2E-100 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y880_RS22130 ff955beb97bbcfa014c4ffa2e035b0d3 283 Gene3D G3DSA:3.40.50.620 1 176 4.6E-77 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS12100 7316100db997fa301212246dcbec6873 132 Pfam PF01641 SelR domain 11 128 2.4E-52 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Y880_RS12100 7316100db997fa301212246dcbec6873 132 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 9 131 4.0E-54 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Y880_RS12100 7316100db997fa301212246dcbec6873 132 SUPERFAMILY SSF51316 7 131 1.08E-56 T 29-03-2018 IPR011057 Mss4-like Y880_RS12100 7316100db997fa301212246dcbec6873 132 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 37.608 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Y880_RS12100 7316100db997fa301212246dcbec6873 132 Gene3D G3DSA:2.170.150.20 1 132 6.7E-58 T 29-03-2018 Y880_RS01210 83a71b07e1fbdcbed0f7e382b1b06eee 259 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 Y880_RS01210 83a71b07e1fbdcbed0f7e382b1b06eee 259 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 251 1.3E-94 T 29-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 Y880_RS01210 83a71b07e1fbdcbed0f7e382b1b06eee 259 Gene3D G3DSA:3.40.190.10 138 259 8.7E-20 T 29-03-2018 Y880_RS01210 83a71b07e1fbdcbed0f7e382b1b06eee 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 252 2.4E-66 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS01210 83a71b07e1fbdcbed0f7e382b1b06eee 259 SUPERFAMILY SSF53850 1 255 3.03E-70 T 29-03-2018 Y880_RS01210 83a71b07e1fbdcbed0f7e382b1b06eee 259 SMART SM00062 25 254 2.1E-81 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS01210 83a71b07e1fbdcbed0f7e382b1b06eee 259 Gene3D G3DSA:3.40.190.10 16 137 3.5E-37 T 29-03-2018 Y880_RS03640 36d0ec7afd40475b980f31939ae9dd15 515 SUPERFAMILY SSF53383 235 350 1.17E-12 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS03640 36d0ec7afd40475b980f31939ae9dd15 515 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 25 136 2.6E-8 T 29-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 Y880_RS03640 36d0ec7afd40475b980f31939ae9dd15 515 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 256 330 1.1E-15 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Y880_RS03640 36d0ec7afd40475b980f31939ae9dd15 515 Gene3D G3DSA:3.90.100.10 385 501 1.5E-21 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y880_RS03640 36d0ec7afd40475b980f31939ae9dd15 515 SUPERFAMILY SSF55904 353 496 1.11E-23 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y880_RS03640 36d0ec7afd40475b980f31939ae9dd15 515 Gene3D G3DSA:3.90.1150.10 210 381 8.5E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS03640 36d0ec7afd40475b980f31939ae9dd15 515 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 358 487 1.4E-33 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 Gene3D G3DSA:1.10.150.130 2 112 3.2E-21 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 291 57.932 T 29-03-2018 IPR023009 Tyrosine recombinase XerC/XerD Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 7 293 1.3E-109 T 29-03-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 Gene3D G3DSA:1.10.443.10 113 285 6.3E-45 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 88 3.6E-23 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 SUPERFAMILY SSF56349 104 289 3.83E-52 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 SUPERFAMILY SSF47823 4 96 3.92E-19 T 29-03-2018 IPR010998 Integrase, Lambda-type, N-terminal Y880_RS25010 317d7cf39b0c74638eae8e182996ce43 303 Pfam PF00589 Phage integrase family 111 277 1.1E-42 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 PIRSF PIRSF001589 1 589 7.7E-205 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 Gene3D G3DSA:3.60.20.10 1 222 6.6E-51 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 SUPERFAMILY SSF52402 441 562 9.04E-72 T 29-03-2018 Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 SUPERFAMILY SSF52402 234 388 9.04E-72 T 29-03-2018 Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 586 0.0 T 29-03-2018 IPR017535 Asparagine synthase family amidotransferase Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 Gene3D G3DSA:3.40.50.620 223 589 2.5E-68 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 Pfam PF13537 Glutamine amidotransferase domain 47 166 4.5E-43 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 519 4.1E-118 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 SUPERFAMILY SSF56235 1 224 3.69E-60 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS15415 392530629cf0c8d28811da2e52b90e04 589 Pfam PF00733 Asparagine synthase 246 584 1.6E-80 T 29-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y880_RS24275 502654a1531a733cfcde290c6b20c601 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 235 3.3E-77 T 29-03-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Y880_RS24275 502654a1531a733cfcde290c6b20c601 245 SUPERFAMILY SSF51366 1 239 2.28E-75 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Y880_RS24275 502654a1531a733cfcde290c6b20c601 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 239 35.569 T 29-03-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Y880_RS24275 502654a1531a733cfcde290c6b20c601 245 Gene3D G3DSA:3.20.20.70 1 243 3.0E-60 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS24275 502654a1531a733cfcde290c6b20c601 245 Pfam PF00977 Histidine biosynthesis protein 3 231 1.3E-77 T 29-03-2018 IPR006062 Histidine biosynthesis GO:0000105 Y880_RS06690 7ede9cc7c6d0bc684be875246c243799 546 Gene3D G3DSA:3.40.50.1820 102 513 1.3E-18 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06690 7ede9cc7c6d0bc684be875246c243799 546 SUPERFAMILY SSF53474 327 495 2.21E-11 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06690 7ede9cc7c6d0bc684be875246c243799 546 SUPERFAMILY SSF53474 100 134 2.21E-11 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06690 7ede9cc7c6d0bc684be875246c243799 546 SUPERFAMILY SSF53474 198 241 2.21E-11 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06690 7ede9cc7c6d0bc684be875246c243799 546 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 104 240 6.6E-6 T 29-03-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 Y880_RS22820 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 263 284 1.6E-8 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y880_RS22820 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 Pfam PF00005 ABC transporter 60 215 2.7E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS22820 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 Gene3D G3DSA:3.40.50.300 31 284 5.0E-54 T 29-03-2018 Y880_RS22820 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 SUPERFAMILY SSF52540 44 283 1.67E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22820 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 44 285 2.2E-116 T 29-03-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD Y880_RS23345 23eeb7aa138d043bc9ec1c224648db2e 236 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 30 186 1.7E-37 T 29-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Y880_RS23345 23eeb7aa138d043bc9ec1c224648db2e 236 SUPERFAMILY SSF159594 28 189 2.17E-21 T 29-03-2018 Y880_RS23345 23eeb7aa138d043bc9ec1c224648db2e 236 Gene3D G3DSA:3.40.50.10610 17 204 7.6E-33 T 29-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Y880_RS18355 4acb9c3b05bf16a6291a8db8eb0e6c3c 482 TIGRFAM TIGR00908 2A0305: ethanolamine permease 26 470 7.2E-220 T 29-03-2018 IPR004757 Ethanolamine permease Y880_RS18355 4acb9c3b05bf16a6291a8db8eb0e6c3c 482 PIRSF PIRSF006060 11 479 6.0E-70 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS18355 4acb9c3b05bf16a6291a8db8eb0e6c3c 482 Pfam PF13520 Amino acid permease 63 451 6.2E-40 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 Pfam PF00579 tRNA synthetases class I (W and Y) 31 315 8.9E-81 T 29-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 Gene3D G3DSA:3.40.50.620 1 218 2.1E-65 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 2.2E-26 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 2.2E-26 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 2.2E-26 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 2.2E-26 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 396 48.178 T 29-03-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 SUPERFAMILY SSF55174 320 396 9.68E-14 T 29-03-2018 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 Gene3D G3DSA:1.10.240.10 219 309 2.0E-27 T 29-03-2018 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 SUPERFAMILY SSF52374 4 310 2.43E-99 T 29-03-2018 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 Gene3D G3DSA:3.10.290.10 310 399 4.1E-14 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 396 2.7E-119 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y880_RS30040 22f58ca828499a76494f4275cabed39a 399 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS25680 ed19d0d9c30b956bce255f16bb009346 110 Gene3D G3DSA:1.20.1170.10 12 109 4.2E-5 T 29-03-2018 Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 Gene3D G3DSA:3.40.50.720 1 285 3.3E-86 T 29-03-2018 Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 SUPERFAMILY SSF51735 41 284 2.69E-87 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 43 228 0.0072 T 29-03-2018 Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 52 281 4.2E-67 T 29-03-2018 Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 44 61 1.6E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 1.6E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 181 1.6E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 210 1.6E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 266 1.6E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 229 1.6E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 9.7E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 9.7E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 9.7E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07920 ed2ce9434d15b4bb865e4f4eddec3a22 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 178 206 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS06440 de9ede1c9851ec29243558f7a32597a8 295 Pfam PF03466 LysR substrate binding domain 89 293 2.0E-45 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS06440 de9ede1c9851ec29243558f7a32597a8 295 Gene3D G3DSA:3.40.190.10 178 263 5.5E-23 T 29-03-2018 Y880_RS06440 de9ede1c9851ec29243558f7a32597a8 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.8E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06440 de9ede1c9851ec29243558f7a32597a8 295 SUPERFAMILY SSF53850 90 294 1.66E-43 T 29-03-2018 Y880_RS06440 de9ede1c9851ec29243558f7a32597a8 295 Gene3D G3DSA:3.40.190.10 93 177 3.1E-18 T 29-03-2018 Y880_RS06440 de9ede1c9851ec29243558f7a32597a8 295 Gene3D G3DSA:1.10.10.10 2 85 1.6E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06440 de9ede1c9851ec29243558f7a32597a8 295 SUPERFAMILY SSF46785 4 113 3.53E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02915 03994d4a51cd85208d822064037f968c 157 SUPERFAMILY SSF55961 1 149 8.79E-43 T 29-03-2018 Y880_RS02915 03994d4a51cd85208d822064037f968c 157 Gene3D G3DSA:3.30.530.20 2 152 7.7E-35 T 29-03-2018 IPR023393 START-like domain Y880_RS02915 03994d4a51cd85208d822064037f968c 157 Pfam PF08982 Domain of unknown function (DUF1857) 16 147 1.6E-24 T 29-03-2018 IPR015075 Acetylaranotin biosynthesis cluster protein L Y880_RS26530 4efb9355b3d36221451231f426f749f1 126 Pfam PF03899 ATP synthase I chain 9 105 6.7E-24 T 29-03-2018 IPR005598 ATP synthase protein I Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 29-03-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 SMART SM00881 4 100 1.5E-36 T 29-03-2018 IPR003781 CoA-binding GO:0048037 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 SUPERFAMILY SSF52210 123 289 1.16E-57 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 Pfam PF00549 CoA-ligase 151 270 6.1E-22 T 29-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 SUPERFAMILY SSF51735 1 122 1.93E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 5.1E-39 T 29-03-2018 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 5.1E-39 T 29-03-2018 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 5.1E-39 T 29-03-2018 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 5.1E-39 T 29-03-2018 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 PIRSF PIRSF001553 1 290 9.4E-134 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 Pfam PF02629 CoA binding domain 6 99 7.8E-32 T 29-03-2018 IPR003781 CoA-binding GO:0048037 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 Gene3D G3DSA:3.40.50.720 1 119 2.6E-44 T 29-03-2018 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 7.7E-145 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 42.831 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 29-03-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site Y880_RS04985 25b3afda26f1b15efac299242e14f132 295 Gene3D G3DSA:3.40.50.261 120 295 3.5E-56 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS25610 66f65526e605639ca22f8ae7fd9ef315 140 Pfam PF01042 Endoribonuclease L-PSP 26 133 6.6E-22 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS25610 66f65526e605639ca22f8ae7fd9ef315 140 Gene3D G3DSA:3.30.1330.40 12 137 1.5E-27 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS25610 66f65526e605639ca22f8ae7fd9ef315 140 SUPERFAMILY SSF55298 24 137 2.83E-32 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 Gene3D G3DSA:1.10.10.10 1 83 5.5E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 SUPERFAMILY SSF46785 1 80 2.42E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 Gene3D G3DSA:3.40.190.10 89 176 9.6E-25 T 29-03-2018 Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 Pfam PF03466 LysR substrate binding domain 87 291 1.7E-45 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 SUPERFAMILY SSF53850 88 293 2.31E-42 T 29-03-2018 Y880_RS16115 2e187bf80b538451f5ef5ce4c6379719 295 Gene3D G3DSA:3.40.190.10 177 267 5.2E-27 T 29-03-2018 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 Gene3D G3DSA:1.10.1660.10 57 135 1.7E-20 T 29-03-2018 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 1.8E-56 T 29-03-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.0E-9 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.0E-9 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.0E-9 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 Pfam PF13411 MerR HTH family regulatory protein 1 68 5.6E-22 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 SUPERFAMILY SSF46955 1 113 3.48E-37 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 Gene3D G3DSA:1.10.1660.10 1 56 5.5E-24 T 29-03-2018 Y880_RS16600 0a94895eaecbf22e8b82f22393a8e6b1 156 SMART SM00422 1 70 4.2E-31 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS25050 4866becbc33a9acb30b96cbee01fd8ef 442 Pfam PF00909 Ammonium Transporter Family 35 440 1.3E-117 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Y880_RS25050 4866becbc33a9acb30b96cbee01fd8ef 442 Gene3D G3DSA:1.10.3430.10 25 421 4.4E-131 T 29-03-2018 Y880_RS25050 4866becbc33a9acb30b96cbee01fd8ef 442 TIGRFAM TIGR00836 amt: ammonium transporter 33 440 1.2E-143 T 29-03-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Y880_RS25050 4866becbc33a9acb30b96cbee01fd8ef 442 SUPERFAMILY SSF111352 29 421 1.96E-128 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Y880_RS25050 4866becbc33a9acb30b96cbee01fd8ef 442 ProSitePatterns PS01219 Ammonium transporters signature. 198 223 - T 29-03-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Y880_RS05030 05125308199344f144068afcaf6e4d0c 273 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 40.232 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS05030 05125308199344f144068afcaf6e4d0c 273 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 264 2.8E-98 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS05030 05125308199344f144068afcaf6e4d0c 273 PIRSF PIRSF000388 1 272 5.8E-98 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS05030 05125308199344f144068afcaf6e4d0c 273 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 15 269 1.7E-91 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS05030 05125308199344f144068afcaf6e4d0c 273 SUPERFAMILY SSF51621 10 269 4.29E-93 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS05030 05125308199344f144068afcaf6e4d0c 273 Gene3D G3DSA:3.20.20.60 1 269 9.3E-73 T 29-03-2018 Y880_RS05910 95bc6050fd76e15f7ff0921a376eafb5 395 Pfam PF13511 Domain of unknown function (DUF4124) 144 180 1.3E-5 T 29-03-2018 IPR025392 Domain of unknown function DUF4124 Y880_RS05910 95bc6050fd76e15f7ff0921a376eafb5 395 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 266 393 3.1E-27 T 29-03-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 6.8E-12 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 6.8E-12 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 SUPERFAMILY SSF46689 1 65 7.98E-19 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 Gene3D G3DSA:1.10.357.10 1 211 2.5E-39 T 29-03-2018 Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 9.1E-18 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 83 198 3.8E-13 T 29-03-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 Y880_RS15995 5c37ad461cd31056bf3cdd7d6818c5f8 212 SUPERFAMILY SSF48498 83 202 8.01E-12 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS01690 d7e349b3189a6680867002cfc81c7ae0 224 SUPERFAMILY SSF52402 4 223 1.54E-64 T 29-03-2018 Y880_RS01690 d7e349b3189a6680867002cfc81c7ae0 224 Pfam PF06508 Queuosine biosynthesis protein QueC 5 215 2.5E-80 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y880_RS01690 d7e349b3189a6680867002cfc81c7ae0 224 Gene3D G3DSA:3.40.50.620 2 224 1.3E-51 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS01690 d7e349b3189a6680867002cfc81c7ae0 224 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 4 221 56.337 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y880_RS01690 d7e349b3189a6680867002cfc81c7ae0 224 PIRSF PIRSF006293 2 224 9.8E-80 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y880_RS01690 d7e349b3189a6680867002cfc81c7ae0 224 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 6 208 9.5E-63 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y880_RS22535 6a0a877c200cb1653cc819a26337cdfe 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 160 213 2.2E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS22535 6a0a877c200cb1653cc819a26337cdfe 227 SMART SM00421 158 215 1.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS22535 6a0a877c200cb1653cc819a26337cdfe 227 Gene3D G3DSA:1.10.10.10 104 219 1.6E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22535 6a0a877c200cb1653cc819a26337cdfe 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 175 3.2E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS22535 6a0a877c200cb1653cc819a26337cdfe 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 191 3.2E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS22535 6a0a877c200cb1653cc819a26337cdfe 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 203 3.2E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS22535 6a0a877c200cb1653cc819a26337cdfe 227 SUPERFAMILY SSF46894 158 217 2.99E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 PIRSF PIRSF002599 1 84 2.7E-22 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 PRINTS PR00050 Cold shock protein signature 25 34 1.6E-15 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 PRINTS PR00050 Cold shock protein signature 4 19 1.6E-15 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 PRINTS PR00050 Cold shock protein signature 40 58 1.6E-15 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 Gene3D G3DSA:2.40.50.140 1 76 1.9E-24 T 29-03-2018 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 67 6.5E-38 T 29-03-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 SMART SM00357 3 67 3.9E-23 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 SUPERFAMILY SSF50249 1 65 2.4E-22 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 4.6E-27 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS10525 369e4e9b07834af497b8a61b3a4a6c1a 90 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 29-03-2018 IPR019844 Cold-shock conserved site Y880_RS14450 f2155a42efe28ba921b6de03b95d6fe2 438 Gene3D G3DSA:2.40.160.10 25 438 1.6E-65 T 29-03-2018 Y880_RS14450 f2155a42efe28ba921b6de03b95d6fe2 438 SUPERFAMILY SSF56935 49 246 1.28E-27 T 29-03-2018 Y880_RS14450 f2155a42efe28ba921b6de03b95d6fe2 438 SUPERFAMILY SSF56935 281 438 1.28E-27 T 29-03-2018 Y880_RS14450 f2155a42efe28ba921b6de03b95d6fe2 438 Pfam PF07396 Phosphate-selective porin O and P 53 438 7.5E-108 T 29-03-2018 IPR010870 Phosphate-selective porin O/P Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 445 1.6E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 Gene3D G3DSA:1.10.287.130 217 293 4.5E-4 T 29-03-2018 Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 SUPERFAMILY SSF55874 308 445 2.23E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 SMART SM00387 343 448 1.0E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 SUPERFAMILY SSF47384 221 292 1.37E-6 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 SMART SM00388 238 300 5.6E-4 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 Gene3D G3DSA:3.30.565.10 304 448 7.5E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 392 6.2E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02780 f1016aa9a8f1ad42db733ab51b452e23 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 6.2E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS09130 44a5b11ac20873ad8efa803be349c6ee 186 Pfam PF03358 NADPH-dependent FMN reductase 6 150 9.3E-30 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y880_RS09130 44a5b11ac20873ad8efa803be349c6ee 186 Gene3D G3DSA:3.40.50.360 2 180 5.8E-33 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS09130 44a5b11ac20873ad8efa803be349c6ee 186 SUPERFAMILY SSF52218 1 176 4.35E-34 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS09130 44a5b11ac20873ad8efa803be349c6ee 186 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 6 177 4.7E-79 T 29-03-2018 IPR019912 FMN reductase, MsuE-like KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 SMART SM00304 168 221 1.3E-4 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 Gene3D G3DSA:1.10.287.130 212 278 1.7E-14 T 29-03-2018 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 SMART SM00388 222 282 4.0E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 Pfam PF00672 HAMP domain 168 217 2.5E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 410 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 429 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 373 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 387 5.2E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 SUPERFAMILY SSF47384 206 279 4.51E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 SMART SM00387 320 432 1.3E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 431 1.6E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 Gene3D G3DSA:3.30.565.10 284 432 1.4E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 SUPERFAMILY SSF55874 284 431 2.49E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS24595 646dc63a5730cf653502c4cd76eef954 439 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 278 5.3E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS08785 25e3ac74fa3af9b3f5a330481128319f 710 Pfam PF00593 TonB dependent receptor 231 706 7.3E-48 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS08785 25e3ac74fa3af9b3f5a330481128319f 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 161 8.0E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS08785 25e3ac74fa3af9b3f5a330481128319f 710 SUPERFAMILY SSF56935 32 710 5.27E-111 T 29-03-2018 Y880_RS08785 25e3ac74fa3af9b3f5a330481128319f 710 Gene3D G3DSA:2.40.170.20 173 710 2.2E-68 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS08785 25e3ac74fa3af9b3f5a330481128319f 710 Gene3D G3DSA:2.170.130.10 28 168 2.8E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS19015 10585faac93e114a943287a3c833301e 370 Gene3D G3DSA:3.40.50.1820 71 370 5.9E-48 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS19015 10585faac93e114a943287a3c833301e 370 Pfam PF00561 alpha/beta hydrolase fold 133 355 2.9E-25 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS19015 10585faac93e114a943287a3c833301e 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 158 173 8.3E-14 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS19015 10585faac93e114a943287a3c833301e 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 202 215 8.3E-14 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS19015 10585faac93e114a943287a3c833301e 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 229 8.3E-14 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS19015 10585faac93e114a943287a3c833301e 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 318 332 8.3E-14 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS19015 10585faac93e114a943287a3c833301e 370 Gene3D G3DSA:2.40.50.100 7 70 1.7E-12 T 29-03-2018 Y880_RS19015 10585faac93e114a943287a3c833301e 370 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 29 58 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y880_RS19015 10585faac93e114a943287a3c833301e 370 SUPERFAMILY SSF51230 3 92 2.36E-21 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS19015 10585faac93e114a943287a3c833301e 370 Pfam PF00364 Biotin-requiring enzyme 6 76 2.8E-14 T 29-03-2018 IPR000089 Biotin/lipoyl attachment Y880_RS19015 10585faac93e114a943287a3c833301e 370 SUPERFAMILY SSF53474 111 369 4.15E-59 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS10845 942dffdfd972cf6767046d7408daf35d 320 Gene3D G3DSA:3.40.50.1100 161 320 2.7E-38 T 29-03-2018 Y880_RS10845 942dffdfd972cf6767046d7408daf35d 320 SUPERFAMILY SSF53686 6 313 2.36E-97 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS10845 942dffdfd972cf6767046d7408daf35d 320 Gene3D G3DSA:3.40.50.1100 17 160 1.7E-41 T 29-03-2018 Y880_RS10845 942dffdfd972cf6767046d7408daf35d 320 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 306 8.5E-82 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 SMART SM00829 14 344 1.7E-4 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 SUPERFAMILY SSF51735 150 314 3.26E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 145 2.2E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 Pfam PF00107 Zinc-binding dehydrogenase 187 310 5.5E-23 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 Gene3D G3DSA:3.40.50.20 286 344 2.4E-5 T 29-03-2018 Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 Gene3D G3DSA:3.40.50.720 175 285 3.0E-23 T 29-03-2018 Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 Gene3D G3DSA:3.90.180.10 1 174 1.1E-50 T 29-03-2018 Y880_RS08715 03c31d252a6dc182623e4b18017e36c7 353 SUPERFAMILY SSF50129 13 173 2.2E-50 T 29-03-2018 IPR011032 GroES-like Y880_RS10360 d0e4617d989e662a862cdc4961500aeb 884 SMART SM00965 65 116 1.3E-10 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS10360 d0e4617d989e662a862cdc4961500aeb 884 Pfam PF00593 TonB dependent receptor 365 877 1.7E-42 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS10360 d0e4617d989e662a862cdc4961500aeb 884 Gene3D G3DSA:2.170.130.10 125 273 2.9E-28 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS10360 d0e4617d989e662a862cdc4961500aeb 884 SUPERFAMILY SSF56935 134 884 4.58E-98 T 29-03-2018 Y880_RS10360 d0e4617d989e662a862cdc4961500aeb 884 Pfam PF07715 TonB-dependent Receptor Plug Domain 147 267 8.6E-23 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS10360 d0e4617d989e662a862cdc4961500aeb 884 Gene3D G3DSA:2.40.170.20 274 884 2.8E-66 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS10360 d0e4617d989e662a862cdc4961500aeb 884 Pfam PF07660 Secretin and TonB N terminus short domain 66 114 2.2E-7 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 Pfam PF01546 Peptidase family M20/M25/M40 88 414 8.6E-39 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 Pfam PF07687 Peptidase dimerisation domain 220 321 2.1E-5 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 18 415 1.6E-136 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 Gene3D G3DSA:3.40.630.10 250 422 1.7E-21 T 29-03-2018 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 PIRSF PIRSF001235 12 421 5.0E-135 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 Gene3D G3DSA:3.40.630.10 10 249 3.3E-46 T 29-03-2018 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 SUPERFAMILY SSF53187 6 231 1.59E-99 T 29-03-2018 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 SUPERFAMILY SSF53187 344 415 1.59E-99 T 29-03-2018 Y880_RS28900 aca01cc2044225ec9b1e150c387f2d0f 427 SUPERFAMILY SSF55031 221 336 1.44E-29 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS18040 399f01d85b483436b763a6be0cbb7a13 244 Gene3D G3DSA:3.40.190.10 140 240 1.3E-4 T 29-03-2018 Y880_RS18040 399f01d85b483436b763a6be0cbb7a13 244 Gene3D G3DSA:3.40.190.10 13 127 2.0E-8 T 29-03-2018 Y880_RS18040 399f01d85b483436b763a6be0cbb7a13 244 SUPERFAMILY SSF53850 32 238 5.43E-23 T 29-03-2018 Y880_RS17040 e15142da9f5e9de3a86b6ec0ce55f1fc 525 SUPERFAMILY SSF75005 367 463 1.33E-8 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain Y880_RS17040 e15142da9f5e9de3a86b6ec0ce55f1fc 525 SUPERFAMILY SSF53328 58 192 6.8E-6 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS17040 e15142da9f5e9de3a86b6ec0ce55f1fc 525 Gene3D G3DSA:3.40.50.170 7 216 1.9E-9 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS17040 e15142da9f5e9de3a86b6ec0ce55f1fc 525 Gene3D G3DSA:2.115.10.20 263 479 3.3E-10 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain Y880_RS01150 7b9b6a30dc5c014ce9624c4c5db82c0d 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 4.7E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS01150 7b9b6a30dc5c014ce9624c4c5db82c0d 314 Gene3D G3DSA:3.40.190.10 179 266 9.3E-20 T 29-03-2018 Y880_RS01150 7b9b6a30dc5c014ce9624c4c5db82c0d 314 SUPERFAMILY SSF46785 7 111 1.04E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01150 7b9b6a30dc5c014ce9624c4c5db82c0d 314 SUPERFAMILY SSF53850 90 298 4.16E-40 T 29-03-2018 Y880_RS01150 7b9b6a30dc5c014ce9624c4c5db82c0d 314 Gene3D G3DSA:1.10.10.10 4 84 8.6E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01150 7b9b6a30dc5c014ce9624c4c5db82c0d 314 Pfam PF03466 LysR substrate binding domain 88 295 8.1E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS01150 7b9b6a30dc5c014ce9624c4c5db82c0d 314 Gene3D G3DSA:3.40.190.10 92 178 6.4E-12 T 29-03-2018 Y880_RS24270 d115299fa9442ae24ea8a295734fe41e 256 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 256 49.365 T 29-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Y880_RS24270 d115299fa9442ae24ea8a295734fe41e 256 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 3 256 1.9E-117 T 29-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Y880_RS24270 d115299fa9442ae24ea8a295734fe41e 256 SUPERFAMILY SSF51366 3 256 2.67E-84 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Y880_RS24270 d115299fa9442ae24ea8a295734fe41e 256 Gene3D G3DSA:3.20.20.70 5 252 4.9E-68 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS24270 d115299fa9442ae24ea8a295734fe41e 256 Pfam PF00977 Histidine biosynthesis protein 6 240 1.3E-92 T 29-03-2018 IPR006062 Histidine biosynthesis GO:0000105 Y880_RS23790 1a2c2ca18f35c8d10923cb86a3ec12d1 479 Gene3D G3DSA:3.40.1000.10 289 421 9.7E-4 T 29-03-2018 Y880_RS23790 1a2c2ca18f35c8d10923cb86a3ec12d1 479 Gene3D G3DSA:3.30.2010.10 47 143 2.3E-23 T 29-03-2018 Y880_RS23790 1a2c2ca18f35c8d10923cb86a3ec12d1 479 Pfam PF01435 Peptidase family M48 60 249 3.0E-42 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 SUPERFAMILY SSF50129 1 140 6.7E-39 T 29-03-2018 IPR011032 GroES-like Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 Gene3D G3DSA:3.40.50.720 133 310 1.9E-36 T 29-03-2018 Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 SUPERFAMILY SSF51735 111 288 1.8E-47 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 2.1E-9 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 Gene3D G3DSA:3.90.180.10 1 132 6.6E-40 T 29-03-2018 Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 325 3.3E-144 T 29-03-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 Pfam PF13602 Zinc-binding dehydrogenase 184 324 2.3E-25 T 29-03-2018 Y880_RS02565 c98d5426a462aa0f59f8e13c5afdfd8c 328 SMART SM00829 10 324 2.8E-59 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS29690 b431c3701033ac42ed8b43bf91ddadab 338 SUPERFAMILY SSF56112 26 318 3.98E-55 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS29690 b431c3701033ac42ed8b43bf91ddadab 338 Gene3D G3DSA:3.90.1200.10 104 337 2.8E-39 T 29-03-2018 Y880_RS29690 b431c3701033ac42ed8b43bf91ddadab 338 Gene3D G3DSA:3.30.200.20 3 103 5.5E-32 T 29-03-2018 Y880_RS29690 b431c3701033ac42ed8b43bf91ddadab 338 Pfam PF01636 Phosphotransferase enzyme family 37 259 1.9E-35 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS00095 1dab8ca25aa43dd1aa74104eaca37655 426 Gene3D G3DSA:3.40.50.300 168 426 9.4E-64 T 29-03-2018 Y880_RS00095 1dab8ca25aa43dd1aa74104eaca37655 426 SMART SM00382 195 316 7.2E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS00095 1dab8ca25aa43dd1aa74104eaca37655 426 SUPERFAMILY SSF52540 51 423 2.35E-101 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00095 1dab8ca25aa43dd1aa74104eaca37655 426 Pfam PF00437 Type II/IV secretion system protein 71 334 1.1E-85 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS00095 1dab8ca25aa43dd1aa74104eaca37655 426 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 262 276 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS00095 1dab8ca25aa43dd1aa74104eaca37655 426 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 5 423 2.6E-209 T 29-03-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 Y880_RS00095 1dab8ca25aa43dd1aa74104eaca37655 426 Gene3D G3DSA:3.30.450.90 31 167 3.4E-46 T 29-03-2018 Y880_RS14110 5f5d7dd8be1201a42b37927629da7d8e 463 SUPERFAMILY SSF55073 221 410 1.21E-61 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS14110 5f5d7dd8be1201a42b37927629da7d8e 463 SMART SM00044 188 398 2.0E-34 T 29-03-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Y880_RS14110 5f5d7dd8be1201a42b37927629da7d8e 463 Pfam PF05230 MASE2 domain 19 108 2.9E-29 T 29-03-2018 IPR007894 MASE2 Y880_RS14110 5f5d7dd8be1201a42b37927629da7d8e 463 Gene3D G3DSA:3.30.70.1230 219 416 3.1E-59 T 29-03-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Y880_RS14110 5f5d7dd8be1201a42b37927629da7d8e 463 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 225 407 1.2E-39 T 29-03-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 SMART SM01359 646 792 1.1E-26 T 29-03-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 SUPERFAMILY SSF48239 1043 1147 3.92E-14 T 29-03-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Gene3D G3DSA:2.60.40.10 435 543 4.2E-4 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Gene3D G3DSA:2.60.40.10 233 306 0.43 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Gene3D G3DSA:1.50.10.20 1038 1459 2.9E-19 T 29-03-2018 Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 647 792 2.4E-13 T 29-03-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 SMART SM01360 857 947 2.1E-26 T 29-03-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Pfam PF00207 Alpha-2-macroglobulin family 857 944 1.3E-23 T 29-03-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Pfam PF01835 MG2 domain 332 428 4.6E-19 T 29-03-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Gene3D G3DSA:2.60.40.10 331 429 1.3E-6 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1045 1067 2.6E-4 T 29-03-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming Y880_RS20750 477f5f79a06b3c133d5bb96062398c99 1516 Gene3D G3DSA:2.60.40.10 744 904 1.4E-11 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS16165 b7176690f0941b834b72189f317e8eb0 123 Gene3D G3DSA:1.10.3830.10 11 123 1.8E-38 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Y880_RS16165 b7176690f0941b834b72189f317e8eb0 123 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 74 85 - T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Y880_RS16165 b7176690f0941b834b72189f317e8eb0 123 Pfam PF01219 Prokaryotic diacylglycerol kinase 20 121 2.6E-32 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Y880_RS04820 d6a777014cc952b5ff428707bf5e45bb 210 Gene3D G3DSA:3.40.50.1820 13 122 3.9E-11 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS04820 d6a777014cc952b5ff428707bf5e45bb 210 SUPERFAMILY SSF53474 4 182 1.29E-26 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS04820 d6a777014cc952b5ff428707bf5e45bb 210 Gene3D G3DSA:3.40.50.1820 123 209 3.6E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03880 44f3c51bda4b778660fd928e89049ec6 242 Gene3D G3DSA:3.90.550.10 9 220 3.3E-11 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS03880 44f3c51bda4b778660fd928e89049ec6 242 Pfam PF00535 Glycosyl transferase family 2 42 122 4.7E-5 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS03880 44f3c51bda4b778660fd928e89049ec6 242 SUPERFAMILY SSF53448 38 217 1.41E-12 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS26080 bffef71379ca405015767e30450b610e 444 Pfam PF00375 Sodium:dicarboxylate symporter family 8 410 3.0E-119 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 Gene3D G3DSA:1.10.3860.10 2 417 6.0E-127 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 SUPERFAMILY SSF118215 8 411 6.8E-125 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 427 42.692 T 29-03-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 154 176 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 302 328 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 337 356 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 202 221 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 364 384 4.2E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS26080 bffef71379ca405015767e30450b610e 444 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 305 328 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y880_RS26080 bffef71379ca405015767e30450b610e 444 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 1367 1489 7.59E-28 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 869 994 1.07E-26 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SMART SM00073 869 966 3.5E-6 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SMART SM00073 1680 1777 6.4E-4 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SMART SM00073 1533 1630 0.011 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SMART SM00073 1367 1464 6.6E-7 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SMART SM00073 1046 1141 0.51 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 438 561 1.29E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Pfam PF01627 Hpt domain 1369 1462 3.2E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Pfam PF01627 Hpt domain 1048 1134 2.4E-11 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Pfam PF01627 Hpt domain 1535 1634 2.4E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Pfam PF01627 Hpt domain 871 961 8.2E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Pfam PF01627 Hpt domain 1682 1775 2.5E-15 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Pfam PF01627 Hpt domain 15 103 1.9E-8 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 12 135 1.28E-23 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 1184 1323 1.1E-12 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 11 151 4.1E-15 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 866 1005 7.5E-31 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 1363 1530 2.0E-27 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 1676 1791 3.7E-24 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 434 621 3.4E-16 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 1531 1664 5.7E-28 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 1533 1655 8.64E-27 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 1189 1309 2.22E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 1681 1783 5.5E-20 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 Gene3D G3DSA:1.20.120.160 1020 1181 8.8E-17 T 29-03-2018 Y880_RS28725 a048731dd826c46721b4fb110306897c 1792 SUPERFAMILY SSF47226 1046 1169 1.96E-19 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 SUPERFAMILY SSF56003 320 744 1.51E-116 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Gene3D G3DSA:3.30.365.10 421 569 4.3E-38 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Gene3D G3DSA:3.30.365.10 320 420 3.1E-21 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Gene3D G3DSA:3.90.1170.50 190 292 7.7E-26 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 PIRSF PIRSF036389 1 742 3.5E-248 T 29-03-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Gene3D G3DSA:3.30.365.10 30 189 1.9E-35 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Gene3D G3DSA:3.30.365.10 570 748 6.1E-48 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 599 673 3.2E-14 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 40 167 2.3E-22 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 321 583 7.8E-28 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 SMART SM01008 204 290 1.1E-20 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS05045 a62a16a4b7753bd111132df9c77ca431 748 SUPERFAMILY SSF56003 6 235 9.16E-39 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 Hamap MF_00303 Trigger factor [tig]. 1 417 21.499 T 29-03-2018 IPR005215 Trigger factor GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 236 2.2E-12 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 Gene3D G3DSA:1.10.3120.10 227 388 3.7E-44 T 29-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 SUPERFAMILY SSF109998 248 428 8.63E-47 T 29-03-2018 IPR027304 Trigger factor/SurA domain Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 TIGRFAM TIGR00115 tig: trigger factor 11 410 1.0E-138 T 29-03-2018 IPR005215 Trigger factor GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 142 1.2E-42 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 SUPERFAMILY SSF54534 90 241 1.39E-34 T 29-03-2018 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 411 3.1E-36 T 29-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 Gene3D G3DSA:3.30.70.1050 1 118 1.1E-37 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 SUPERFAMILY SSF102735 1 130 8.5E-41 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 PIRSF PIRSF003095 1 432 9.7E-124 T 29-03-2018 IPR005215 Trigger factor GO:0015031 Y880_RS06125 3bcc344d2c3c7fb963147a52a27a7ba6 436 Gene3D G3DSA:3.10.50.40 157 226 4.3E-12 T 29-03-2018 Y880_RS23395 06329611063ca10a9bc194d0b9bbcd48 627 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 593 56.332 T 29-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y880_RS23395 06329611063ca10a9bc194d0b9bbcd48 627 Pfam PF13667 ThiC-associated domain 22 99 6.9E-34 T 29-03-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y880_RS23395 06329611063ca10a9bc194d0b9bbcd48 627 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 591 3.2E-219 T 29-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y880_RS23395 06329611063ca10a9bc194d0b9bbcd48 627 Pfam PF01964 Radical SAM ThiC family 140 588 3.0E-200 T 29-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y880_RS02230 bc87a0dbb9bd26d1ddfaa33075e6ec45 400 Pfam PF10135 Rod binding protein 56 107 1.6E-16 T 29-03-2018 IPR019301 Flagellar protein FlgJ, N-terminal Y880_RS02230 bc87a0dbb9bd26d1ddfaa33075e6ec45 400 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 248 386 2.3E-22 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Y880_RS02230 bc87a0dbb9bd26d1ddfaa33075e6ec45 400 Gene3D G3DSA:1.10.530.10 234 391 3.3E-36 T 29-03-2018 Y880_RS02230 bc87a0dbb9bd26d1ddfaa33075e6ec45 400 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 19 385 7.0E-85 T 29-03-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 Y880_RS02230 bc87a0dbb9bd26d1ddfaa33075e6ec45 400 SMART SM00047 229 389 2.9E-38 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Y880_RS02230 bc87a0dbb9bd26d1ddfaa33075e6ec45 400 SUPERFAMILY SSF53955 204 279 8.62E-5 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS03245 d31fc6144e65416054a9fc6399d3d293 314 Pfam PF05544 Proline racemase 6 312 3.0E-111 T 29-03-2018 IPR008794 Proline racemase family Y880_RS03245 d31fc6144e65416054a9fc6399d3d293 314 PIRSF PIRSF029792 1 313 3.0E-95 T 29-03-2018 IPR008794 Proline racemase family Y880_RS03245 d31fc6144e65416054a9fc6399d3d293 314 SUPERFAMILY SSF54506 2 312 3.14E-100 T 29-03-2018 Y880_RS03245 d31fc6144e65416054a9fc6399d3d293 314 Gene3D G3DSA:3.10.310.10 1 141 2.2E-32 T 29-03-2018 Y880_RS03245 d31fc6144e65416054a9fc6399d3d293 314 Gene3D G3DSA:3.10.310.10 142 290 7.9E-51 T 29-03-2018 Y880_RS24080 a9bface8e219778004c6f5f85de36208 196 Pfam PF05962 HutD 11 181 1.7E-54 T 29-03-2018 IPR010282 Uncharacterised protein family HutD/Ves Y880_RS24080 a9bface8e219778004c6f5f85de36208 196 SUPERFAMILY SSF51182 4 190 6.49E-57 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS24080 a9bface8e219778004c6f5f85de36208 196 Gene3D G3DSA:2.60.120.10 111 195 5.2E-25 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS24080 a9bface8e219778004c6f5f85de36208 196 Gene3D G3DSA:2.60.120.10 9 110 2.1E-37 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS14570 bb522891c55816db9df78a419f156e84 156 Pfam PF01575 MaoC like domain 16 116 2.4E-25 T 29-03-2018 IPR002539 MaoC-like domain Y880_RS14570 bb522891c55816db9df78a419f156e84 156 Gene3D G3DSA:3.10.129.10 7 139 5.4E-35 T 29-03-2018 Y880_RS14570 bb522891c55816db9df78a419f156e84 156 SUPERFAMILY SSF54637 5 141 2.04E-38 T 29-03-2018 IPR029069 HotDog domain Y880_RS14570 bb522891c55816db9df78a419f156e84 156 PRINTS PR01483 Fatty acid synthase signature 26 48 3.0E-5 T 29-03-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y880_RS14570 bb522891c55816db9df78a419f156e84 156 PRINTS PR01483 Fatty acid synthase signature 48 69 3.0E-5 T 29-03-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y880_RS22865 90bcbb8301d2a3cc794f7987d4f65d0e 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 36 69 1.9E-13 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y880_RS22865 90bcbb8301d2a3cc794f7987d4f65d0e 88 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 12 66 6.5E-17 T 29-03-2018 IPR012783 Zinc finger, C4 DksA/TraR-type Y880_RS22865 90bcbb8301d2a3cc794f7987d4f65d0e 88 SUPERFAMILY SSF57716 38 73 3.56E-8 T 29-03-2018 Y880_RS22865 90bcbb8301d2a3cc794f7987d4f65d0e 88 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 39 63 - T 29-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Y880_RS22865 90bcbb8301d2a3cc794f7987d4f65d0e 88 PRINTS PR00618 DksA/TraR zinc finger signature 39 50 4.2E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y880_RS22865 90bcbb8301d2a3cc794f7987d4f65d0e 88 PRINTS PR00618 DksA/TraR zinc finger signature 51 63 4.2E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y880_RS20500 a1198df484851662111ba3f175a6862f 448 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 334 37.164 T 29-03-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 Pfam PF00579 tRNA synthetases class I (W and Y) 3 243 8.8E-50 T 29-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 SUPERFAMILY SSF160113 356 398 2.49E-6 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 333 2.4E-93 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 150 171 2.4E-17 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 2.4E-17 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 2.4E-17 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 204 214 2.4E-17 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 Gene3D G3DSA:3.40.50.620 1 213 1.1E-59 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS20500 a1198df484851662111ba3f175a6862f 448 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 20 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 SUPERFAMILY SSF52374 4 333 4.51E-76 T 29-03-2018 Y880_RS20500 a1198df484851662111ba3f175a6862f 448 Gene3D G3DSA:1.10.240.10 214 301 1.7E-20 T 29-03-2018 Y880_RS14205 c5ce7667dec55a63999c294d917ac87b 285 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 274 3.3E-61 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Y880_RS14205 c5ce7667dec55a63999c294d917ac87b 285 Gene3D G3DSA:3.40.190.100 126 235 4.0E-35 T 29-03-2018 Y880_RS14205 c5ce7667dec55a63999c294d917ac87b 285 SUPERFAMILY SSF53850 23 284 2.03E-74 T 29-03-2018 Y880_RS14205 c5ce7667dec55a63999c294d917ac87b 285 Gene3D G3DSA:3.40.190.10 22 125 1.3E-14 T 29-03-2018 Y880_RS00410 90986d4614f56772e2d5f16fa8cd3363 84 Gene3D G3DSA:1.10.150.250 1 84 1.1E-26 T 29-03-2018 Y880_RS00410 90986d4614f56772e2d5f16fa8cd3363 84 SUPERFAMILY SSF109910 3 79 1.83E-24 T 29-03-2018 IPR005631 Flavinator of succinate dehydrogenase Y880_RS00410 90986d4614f56772e2d5f16fa8cd3363 84 Pfam PF03937 Flavinator of succinate dehydrogenase 8 77 8.3E-25 T 29-03-2018 IPR005631 Flavinator of succinate dehydrogenase Y880_RS27630 95da3f361c07ecbd5d07f340cbc0582f 193 Pfam PF06821 Serine hydrolase 8 178 6.8E-69 T 29-03-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 Y880_RS27630 95da3f361c07ecbd5d07f340cbc0582f 193 Gene3D G3DSA:3.40.50.1820 5 180 4.7E-19 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS27630 95da3f361c07ecbd5d07f340cbc0582f 193 SUPERFAMILY SSF53474 8 180 4.2E-37 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 TIGRFAM TIGR00835 agcS: amino acid carrier protein 17 437 2.3E-152 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 Pfam PF01235 Sodium:alanine symporter family 53 448 1.9E-160 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 210 229 9.2E-59 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 406 426 9.2E-59 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 345 367 9.2E-59 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 182 200 9.2E-59 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 91 113 9.2E-59 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS16360 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 303 321 9.2E-59 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Gene3D G3DSA:3.40.50.10070 24 161 8.3E-38 T 29-03-2018 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Gene3D G3DSA:2.130.10.10 322 430 1.3E-9 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 428 4.1E-155 T 29-03-2018 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF04052 TolB amino-terminal domain 25 126 6.2E-30 T 29-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Hamap MF_00671 Protein TolB [tolB]. 4 427 34.732 T 29-03-2018 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Gene3D G3DSA:2.60.120.20 177 232 8.8E-7 T 29-03-2018 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Gene3D G3DSA:2.60.120.20 278 321 7.3E-13 T 29-03-2018 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Gene3D G3DSA:2.60.120.20 233 277 2.3E-11 T 29-03-2018 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 SUPERFAMILY SSF52964 29 158 2.75E-39 T 29-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 372 400 0.043 T 29-03-2018 IPR011659 WD40-like Beta Propeller Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 236 271 7.8E-13 T 29-03-2018 IPR011659 WD40-like Beta Propeller Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 279 314 1.9E-13 T 29-03-2018 IPR011659 WD40-like Beta Propeller Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 200 227 9.6E-7 T 29-03-2018 IPR011659 WD40-like Beta Propeller Y880_RS01670 0fc8f5568ecfc9aa4a711002589b18fe 432 SUPERFAMILY SSF69304 153 429 2.22E-54 T 29-03-2018 Y880_RS18450 6b217a10f7fda159a50473a7c2a6e6d4 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 68 16.08 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS18450 6b217a10f7fda159a50473a7c2a6e6d4 80 PIRSF PIRSF006488 1 80 3.0E-22 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS18450 6b217a10f7fda159a50473a7c2a6e6d4 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 48 3.0E-11 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS18450 6b217a10f7fda159a50473a7c2a6e6d4 80 Pfam PF02609 Exonuclease VII small subunit 9 60 4.8E-20 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS18450 6b217a10f7fda159a50473a7c2a6e6d4 80 SUPERFAMILY SSF116842 3 68 4.18E-21 T 29-03-2018 Y880_RS18450 6b217a10f7fda159a50473a7c2a6e6d4 80 Gene3D G3DSA:1.10.287.1040 6 73 4.1E-24 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS18450 6b217a10f7fda159a50473a7c2a6e6d4 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 8 63 7.4E-22 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y880_RS22230 9a944d568df604d032fc4a74b40c55b1 129 PRINTS PR01651 Protein-export SecG membrane protein signature 4 24 7.0E-41 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Y880_RS22230 9a944d568df604d032fc4a74b40c55b1 129 PRINTS PR01651 Protein-export SecG membrane protein signature 39 55 7.0E-41 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Y880_RS22230 9a944d568df604d032fc4a74b40c55b1 129 PRINTS PR01651 Protein-export SecG membrane protein signature 24 38 7.0E-41 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Y880_RS22230 9a944d568df604d032fc4a74b40c55b1 129 PRINTS PR01651 Protein-export SecG membrane protein signature 55 77 7.0E-41 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Y880_RS22230 9a944d568df604d032fc4a74b40c55b1 129 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 5 74 1.2E-24 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Y880_RS22230 9a944d568df604d032fc4a74b40c55b1 129 Pfam PF03840 Preprotein translocase SecG subunit 5 74 6.4E-20 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Y880_RS11700 63c4bc290cdc953360b665f9f345c4b1 551 SUPERFAMILY SSF110849 37 159 3.92E-10 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS11700 63c4bc290cdc953360b665f9f345c4b1 551 Pfam PF02195 ParB-like nuclease domain 39 102 2.3E-4 T 29-03-2018 IPR003115 ParB/Sulfiredoxin Y880_RS11700 63c4bc290cdc953360b665f9f345c4b1 551 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 28 290 6.8E-121 T 29-03-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB Y880_RS11700 63c4bc290cdc953360b665f9f345c4b1 551 Gene3D G3DSA:3.90.1530.10 31 144 7.7E-14 T 29-03-2018 Y880_RS11700 63c4bc290cdc953360b665f9f345c4b1 551 Gene3D G3DSA:1.10.10.10 162 195 4.7E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 Gene3D G3DSA:1.20.1640.10 285 506 3.9E-29 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 Gene3D G3DSA:3.30.2090.10 157 270 4.1E-13 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 Gene3D G3DSA:3.30.70.1430 44 148 5.4E-31 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 Gene3D G3DSA:3.30.70.1430 554 656 1.3E-13 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82866 295 492 8.11E-32 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 Pfam PF00873 AcrB/AcrD/AcrF family 8 1005 3.5E-157 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82693 44 139 4.36E-19 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 Gene3D G3DSA:3.30.2090.10 706 791 6.2E-14 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82693 553 653 2.49E-8 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82714 189 267 7.85E-10 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82693 141 186 1.39E-17 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82693 272 327 1.39E-17 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82866 789 1010 2.62E-44 T 29-03-2018 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 4.8E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 4.8E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 4.8E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 4.8E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 PRINTS PR00702 Acriflavin resistance protein family signature 539 556 4.8E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 4.8E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 SUPERFAMILY SSF82714 707 790 5.23E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS27415 c28be1cedce43ca106760d82cf7a7ec8 1015 Gene3D G3DSA:1.20.1640.10 804 1009 5.8E-31 T 29-03-2018 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 SUPERFAMILY SSF52172 2 170 2.85E-30 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 Gene3D G3DSA:3.40.50.2300 1 124 1.4E-27 T 29-03-2018 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 SMART SM00448 2 114 4.0E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 Gene3D G3DSA:1.10.10.10 125 207 2.0E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 4.4E-21 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 SMART SM00421 144 201 1.3E-21 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 Pfam PF00072 Response regulator receiver domain 4 115 4.9E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 4.9E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 4.9E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS13235 a22b6fe9a13172875db428cd5748501a 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 4.9E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17285 d0aebf0790c82a7c69c0226e1f7faaaf 258 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 5 166 1.7E-80 T 29-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 Y880_RS17285 d0aebf0790c82a7c69c0226e1f7faaaf 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 152 1.3E-7 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS17285 d0aebf0790c82a7c69c0226e1f7faaaf 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 72 108 0.0021 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS17285 d0aebf0790c82a7c69c0226e1f7faaaf 258 Gene3D G3DSA:1.10.3130.10 1 63 1.0E-26 T 29-03-2018 Y880_RS17285 d0aebf0790c82a7c69c0226e1f7faaaf 258 SUPERFAMILY SSF51161 2 172 5.27E-58 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS17285 d0aebf0790c82a7c69c0226e1f7faaaf 258 Gene3D G3DSA:2.160.10.10 64 236 7.4E-42 T 29-03-2018 Y880_RS05565 1a924afcd5c68606b8b171de65b5d7b5 92 ProDom PD029314 TYEA PLASMID ACR1 SECRETION CONTROL TARGETING TYPE LSSA VP1666 TARGET 1 87 5.0E-44 T 29-03-2018 IPR015144 Type III secretion system effector delivery regulator TyeA Y880_RS05565 1a924afcd5c68606b8b171de65b5d7b5 92 SUPERFAMILY SSF140591 2 90 3.73E-29 T 29-03-2018 Y880_RS05565 1a924afcd5c68606b8b171de65b5d7b5 92 Pfam PF09059 TyeA 6 86 2.7E-32 T 29-03-2018 IPR015144 Type III secretion system effector delivery regulator TyeA Y880_RS05565 1a924afcd5c68606b8b171de65b5d7b5 92 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 4 84 3.1E-21 T 29-03-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 Gene3D G3DSA:3.40.50.980 16 211 4.0E-39 T 29-03-2018 Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 Pfam PF13193 AMP-binding enzyme C-terminal domain 465 540 1.6E-17 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 Gene3D G3DSA:2.30.38.10 376 449 1.9E-27 T 29-03-2018 Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 Pfam PF00501 AMP-binding enzyme 25 456 4.0E-102 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 ProSitePatterns PS00455 Putative AMP-binding domain signature. 206 217 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 Gene3D G3DSA:3.30.300.30 450 551 7.7E-29 T 29-03-2018 Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 Gene3D G3DSA:3.40.50.980 212 373 8.4E-50 T 29-03-2018 Y880_RS10155 72f62e910fc509917c187aeb7e6313d9 564 SUPERFAMILY SSF56801 16 552 8.5E-156 T 29-03-2018 Y880_RS28365 c89522991f9bf1b6edb7147599976672 265 Pfam PF05050 Methyltransferase FkbM domain 29 176 8.4E-19 T 29-03-2018 IPR006342 Methyltransferase FkbM Y880_RS28365 c89522991f9bf1b6edb7147599976672 265 SUPERFAMILY SSF53335 17 191 3.32E-22 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS28365 c89522991f9bf1b6edb7147599976672 265 Gene3D G3DSA:3.40.50.150 8 196 1.8E-21 T 29-03-2018 Y880_RS28365 c89522991f9bf1b6edb7147599976672 265 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 27 164 2.2E-25 T 29-03-2018 IPR006342 Methyltransferase FkbM Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 Gene3D G3DSA:3.40.50.2300 165 309 3.2E-24 T 29-03-2018 Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 Gene3D G3DSA:2.40.50.180 39 104 2.3E-13 T 29-03-2018 Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 Pfam PF01584 CheW-like domain 21 156 3.3E-34 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 Pfam PF00072 Response regulator receiver domain 181 300 8.6E-17 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 Gene3D G3DSA:2.30.30.40 105 147 4.0E-13 T 29-03-2018 Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 SUPERFAMILY SSF50341 16 156 5.75E-35 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 PIRSF PIRSF002867 1 308 1.0E-108 T 29-03-2018 IPR024181 Chemotaxis response regulator CheV Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 SUPERFAMILY SSF52172 179 303 1.71E-24 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 SMART SM00448 179 300 1.7E-18 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14830 8d801bd2aecfb27fe95fdc8e176bea49 310 SMART SM00260 17 153 4.0E-20 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 115 1.9E-37 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 SUPERFAMILY SSF56645 5 240 1.18E-84 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 SUPERFAMILY SSF47203 225 375 3.54E-57 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 Gene3D G3DSA:1.20.140.10 216 375 1.9E-59 T 29-03-2018 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 3.1E-27 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 Gene3D G3DSA:2.40.110.10 119 215 1.4E-40 T 29-03-2018 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 7.4E-51 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 PIRSF PIRSF016578 217 375 4.1E-12 T 29-03-2018 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 PIRSF PIRSF016578 4 194 7.7E-14 T 29-03-2018 Y880_RS10130 7f1b5dd930175adbddf1dfa5f51b20dd 375 Gene3D G3DSA:1.10.540.10 3 118 6.0E-38 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS01925 55d84c45c734c14ddfab16c60bc93623 158 Gene3D G3DSA:3.10.50.30 75 158 4.7E-14 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y880_RS01925 55d84c45c734c14ddfab16c60bc93623 158 SUPERFAMILY SSF54534 85 145 2.35E-6 T 29-03-2018 Y880_RS25375 4d3c99bfef1d234c961d169f8a0ea9a8 55 PRINTS PR00163 Rubredoxin signature 3 19 4.3E-9 T 29-03-2018 IPR024935 Rubredoxin domain GO:0005506 Y880_RS25375 4d3c99bfef1d234c961d169f8a0ea9a8 55 PRINTS PR00163 Rubredoxin signature 33 49 4.3E-9 T 29-03-2018 IPR024935 Rubredoxin domain GO:0005506 Y880_RS25375 4d3c99bfef1d234c961d169f8a0ea9a8 55 Gene3D G3DSA:2.20.28.10 1 54 6.0E-27 T 29-03-2018 Y880_RS25375 4d3c99bfef1d234c961d169f8a0ea9a8 55 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 29-03-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Y880_RS25375 4d3c99bfef1d234c961d169f8a0ea9a8 55 SUPERFAMILY SSF57802 1 53 1.26E-22 T 29-03-2018 Y880_RS25375 4d3c99bfef1d234c961d169f8a0ea9a8 55 Pfam PF00301 Rubredoxin 3 49 4.1E-23 T 29-03-2018 IPR024935 Rubredoxin domain GO:0005506 Y880_RS25375 4d3c99bfef1d234c961d169f8a0ea9a8 55 PIRSF PIRSF000071 1 55 8.9E-26 T 29-03-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 SMART SM00936 276 366 1.5E-32 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 255 1.1E-87 T 29-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 4.3E-18 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 4.3E-18 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 4.3E-18 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 Gene3D G3DSA:2.60.410.10 276 366 1.3E-22 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 276 366 1.6E-24 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 SUPERFAMILY SSF69189 276 368 8.04E-25 T 29-03-2018 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 SUPERFAMILY SSF56601 8 276 3.04E-90 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS18240 7fcd2f8580bc51cb80272962c9039e66 386 Gene3D G3DSA:3.40.710.10 23 275 2.0E-53 T 29-03-2018 Y880_RS09995 2dbb8996ee5b69853d1951ed270df309 426 Pfam PF13437 HlyD family secretion protein 200 302 6.2E-9 T 29-03-2018 Y880_RS09995 2dbb8996ee5b69853d1951ed270df309 426 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 392 4.2E-81 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS09995 2dbb8996ee5b69853d1951ed270df309 426 Gene3D G3DSA:1.20.1600.10 61 306 5.6E-27 T 29-03-2018 Y880_RS09995 2dbb8996ee5b69853d1951ed270df309 426 SUPERFAMILY SSF111369 78 315 1.57E-60 T 29-03-2018 Y880_RS09995 2dbb8996ee5b69853d1951ed270df309 426 Pfam PF13533 Biotin-lipoyl like 89 136 4.4E-15 T 29-03-2018 Y880_RS16695 883822786f97763247898ad68e86ec78 542 Gene3D G3DSA:1.10.287.950 315 542 3.6E-47 T 29-03-2018 Y880_RS16695 883822786f97763247898ad68e86ec78 542 SMART SM00283 273 541 2.4E-46 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS16695 883822786f97763247898ad68e86ec78 542 SUPERFAMILY SSF58104 233 542 1.83E-61 T 29-03-2018 Y880_RS16695 883822786f97763247898ad68e86ec78 542 Gene3D G3DSA:1.20.120.30 24 173 5.8E-8 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain Y880_RS16695 883822786f97763247898ad68e86ec78 542 Gene3D G3DSA:1.10.287.950 174 310 1.5E-4 T 29-03-2018 Y880_RS16695 883822786f97763247898ad68e86ec78 542 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 182 1.3E-20 T 29-03-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y880_RS16695 883822786f97763247898ad68e86ec78 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 17 1.8E-18 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS16695 883822786f97763247898ad68e86ec78 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 301 330 1.8E-18 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS16695 883822786f97763247898ad68e86ec78 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 405 1.8E-18 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS16695 883822786f97763247898ad68e86ec78 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 1.8E-18 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS16695 883822786f97763247898ad68e86ec78 542 Pfam PF00672 HAMP domain 213 261 1.2E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS16695 883822786f97763247898ad68e86ec78 542 SMART SM00304 213 265 1.4E-11 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS16695 883822786f97763247898ad68e86ec78 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 348 505 5.3E-34 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS18290 f0d5bc93693d5c04fbd8c72f9f753ecd 285 Gene3D G3DSA:3.40.50.150 3 262 2.9E-24 T 29-03-2018 Y880_RS18290 f0d5bc93693d5c04fbd8c72f9f753ecd 285 Pfam PF04072 Leucine carboxyl methyltransferase 60 180 7.6E-16 T 29-03-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 Y880_RS18290 f0d5bc93693d5c04fbd8c72f9f753ecd 285 SUPERFAMILY SSF53335 27 260 1.04E-29 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS00695 b9a4e525153d0624e3ed754b29dcd643 317 Gene3D G3DSA:1.10.10.10 1 80 2.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00695 b9a4e525153d0624e3ed754b29dcd643 317 Pfam PF03466 LysR substrate binding domain 89 303 2.3E-34 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS00695 b9a4e525153d0624e3ed754b29dcd643 317 SUPERFAMILY SSF46785 3 88 4.15E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00695 b9a4e525153d0624e3ed754b29dcd643 317 Gene3D G3DSA:3.40.190.10 81 189 1.6E-12 T 29-03-2018 Y880_RS00695 b9a4e525153d0624e3ed754b29dcd643 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.5E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00695 b9a4e525153d0624e3ed754b29dcd643 317 SUPERFAMILY SSF53850 90 307 2.71E-24 T 29-03-2018 Y880_RS00695 b9a4e525153d0624e3ed754b29dcd643 317 Gene3D G3DSA:3.40.190.10 190 273 1.3E-11 T 29-03-2018 Y880_RS02865 4213d91d48273195b73cd09165979418 466 SMART SM00382 166 308 1.8E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS02865 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:3.40.50.300 146 317 8.0E-25 T 29-03-2018 Y880_RS02865 4213d91d48273195b73cd09165979418 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS02865 4213d91d48273195b73cd09165979418 466 Pfam PF08448 PAS fold 27 135 3.9E-16 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS02865 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:3.30.450.20 13 137 4.3E-10 T 29-03-2018 Y880_RS02865 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:1.10.8.60 318 384 2.7E-17 T 29-03-2018 Y880_RS02865 4213d91d48273195b73cd09165979418 466 Pfam PF02954 Bacterial regulatory protein, Fis family 416 456 9.1E-10 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02865 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:1.10.10.60 385 462 2.2E-14 T 29-03-2018 Y880_RS02865 4213d91d48273195b73cd09165979418 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 439 459 4.9E-8 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02865 4213d91d48273195b73cd09165979418 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 422 439 4.9E-8 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS02865 4213d91d48273195b73cd09165979418 466 SUPERFAMILY SSF55785 22 124 3.14E-12 T 29-03-2018 IPR000014 PAS domain Y880_RS02865 4213d91d48273195b73cd09165979418 466 Pfam PF00158 Sigma-54 interaction domain 150 309 2.8E-59 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS02865 4213d91d48273195b73cd09165979418 466 SUPERFAMILY SSF46689 385 458 7.89E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS02865 4213d91d48273195b73cd09165979418 466 SUPERFAMILY SSF52540 155 384 3.75E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02865 4213d91d48273195b73cd09165979418 466 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS02865 4213d91d48273195b73cd09165979418 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS19665 b5ebf85c053dff8ac4f50db57d26dcd5 248 SUPERFAMILY SSF53067 116 245 3.45E-31 T 29-03-2018 Y880_RS19665 b5ebf85c053dff8ac4f50db57d26dcd5 248 Pfam PF03309 Type III pantothenate kinase 2 200 1.1E-45 T 29-03-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Y880_RS19665 b5ebf85c053dff8ac4f50db57d26dcd5 248 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 243 1.7E-24 T 29-03-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Y880_RS19665 b5ebf85c053dff8ac4f50db57d26dcd5 248 Gene3D G3DSA:3.30.420.40 86 246 1.5E-46 T 29-03-2018 Y880_RS19665 b5ebf85c053dff8ac4f50db57d26dcd5 248 SUPERFAMILY SSF53067 1 113 5.96E-27 T 29-03-2018 Y880_RS19665 b5ebf85c053dff8ac4f50db57d26dcd5 248 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 248 18.601 T 29-03-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Y880_RS06290 415cce2a2868274baec8747cc37b9797 341 SUPERFAMILY SSF52096 88 199 1.13E-27 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS06290 415cce2a2868274baec8747cc37b9797 341 SUPERFAMILY SSF52096 230 289 1.13E-27 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS06290 415cce2a2868274baec8747cc37b9797 341 Gene3D G3DSA:3.90.226.10 43 298 8.9E-30 T 29-03-2018 Y880_RS06290 415cce2a2868274baec8747cc37b9797 341 Pfam PF01343 Peptidase family S49 152 300 3.2E-44 T 29-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Y880_RS06290 415cce2a2868274baec8747cc37b9797 341 Pfam PF08496 Peptidase family S49 N-terminal 2 148 2.5E-53 T 29-03-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 Y880_RS07790 fffe3e4259375f6d231d605ca255b1bf 79 Pfam PF10976 Protein of unknown function (DUF2790) 21 77 7.9E-18 T 29-03-2018 IPR021245 Protein of unknown function DUF2790 Y880_RS19420 e2c38690382c0ae5e148395725e12e59 165 Gene3D G3DSA:2.40.50.140 1 118 3.5E-45 T 29-03-2018 Y880_RS19420 e2c38690382c0ae5e148395725e12e59 165 PIRSF PIRSF002070 1 159 8.9E-40 T 29-03-2018 Y880_RS19420 e2c38690382c0ae5e148395725e12e59 165 Pfam PF00436 Single-strand binding protein family 5 111 1.6E-42 T 29-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Y880_RS19420 e2c38690382c0ae5e148395725e12e59 165 Hamap MF_00984 Single-stranded DNA-binding protein. 5 116 39.039 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Y880_RS19420 e2c38690382c0ae5e148395725e12e59 165 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 165 3.1E-61 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Y880_RS19420 e2c38690382c0ae5e148395725e12e59 165 SUPERFAMILY SSF50249 3 165 1.37E-60 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS20445 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 83 1.2E-15 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS20445 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 191 5.6E-8 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS20445 7a01069d7bd9ceaeff32e2fa4867ad9a 205 SUPERFAMILY SSF47616 78 205 2.56E-27 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS20445 7a01069d7bd9ceaeff32e2fa4867ad9a 205 SUPERFAMILY SSF52833 6 104 1.1E-22 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS20445 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Gene3D G3DSA:3.40.30.10 4 91 1.8E-22 T 29-03-2018 Y880_RS20445 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Gene3D G3DSA:1.20.1050.10 92 204 2.8E-17 T 29-03-2018 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 113 1.4E-41 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 Gene3D G3DSA:3.30.470.20 213 448 8.0E-95 T 29-03-2018 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 SUPERFAMILY SSF52440 3 116 9.35E-44 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 Gene3D G3DSA:3.40.50.20 4 126 1.5E-49 T 29-03-2018 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 SUPERFAMILY SSF56059 86 352 8.49E-68 T 29-03-2018 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 SMART SM00878 339 445 2.7E-59 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 SUPERFAMILY SSF51246 334 449 1.78E-39 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 156 170 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 Pfam PF02785 Biotin carboxylase C-terminal domain 339 445 8.1E-39 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 Gene3D G3DSA:3.30.1490.20 127 212 4.9E-21 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS29160 3c622f8aeeb736e716b2243b13d28159 458 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 4.2E-73 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS05055 c6ebff03f360dbf73055614c30636149 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 1.4E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS05055 c6ebff03f360dbf73055614c30636149 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 1.4E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS05055 c6ebff03f360dbf73055614c30636149 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 1.4E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS05055 c6ebff03f360dbf73055614c30636149 140 SUPERFAMILY SSF46785 3 139 4.29E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05055 c6ebff03f360dbf73055614c30636149 140 Gene3D G3DSA:1.10.10.10 1 140 1.1E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05055 c6ebff03f360dbf73055614c30636149 140 SMART SM00347 29 129 3.2E-18 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS05055 c6ebff03f360dbf73055614c30636149 140 Pfam PF01047 MarR family 36 93 4.0E-13 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS19240 8b137638b8230d956de4e7b73dc99bd8 234 Gene3D G3DSA:1.10.3720.10 7 230 2.6E-43 T 29-03-2018 Y880_RS19240 8b137638b8230d956de4e7b73dc99bd8 234 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 118 1.5E-25 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS19240 8b137638b8230d956de4e7b73dc99bd8 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 42 224 2.5E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS19240 8b137638b8230d956de4e7b73dc99bd8 234 SUPERFAMILY SSF161098 23 210 1.27E-42 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS25245 7523a4b563889f836689d98481706bae 316 Pfam PF13557 Putative MetA-pathway of phenol degradation 76 310 7.8E-58 T 29-03-2018 IPR025737 MetA-pathway of phenol degradation, putative Y880_RS25245 7523a4b563889f836689d98481706bae 316 Gene3D G3DSA:2.40.170.20 37 202 0.0085 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS25245 7523a4b563889f836689d98481706bae 316 Gene3D G3DSA:2.40.160.20 203 293 1.3E-4 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS12135 373d6ea5ce4e657fbe4d789de91bf3be 319 Gene3D G3DSA:3.40.190.10 205 313 3.0E-9 T 29-03-2018 Y880_RS12135 373d6ea5ce4e657fbe4d789de91bf3be 319 SUPERFAMILY SSF53850 102 304 1.1E-31 T 29-03-2018 Y880_RS12135 373d6ea5ce4e657fbe4d789de91bf3be 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 3.2E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12135 373d6ea5ce4e657fbe4d789de91bf3be 319 SUPERFAMILY SSF46785 10 92 6.35E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12135 373d6ea5ce4e657fbe4d789de91bf3be 319 Pfam PF03466 LysR substrate binding domain 113 304 1.9E-15 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12135 373d6ea5ce4e657fbe4d789de91bf3be 319 Gene3D G3DSA:1.10.10.10 5 93 7.5E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12135 373d6ea5ce4e657fbe4d789de91bf3be 319 Gene3D G3DSA:3.40.190.10 97 204 2.0E-10 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 Gene3D G3DSA:1.20.1640.10 806 1026 4.7E-38 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 Gene3D G3DSA:1.20.1640.10 283 502 1.2E-47 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 Gene3D G3DSA:3.30.70.1430 560 656 1.6E-12 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82714 708 791 4.58E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 Gene3D G3DSA:3.30.70.1430 40 143 6.7E-24 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82714 183 268 1.44E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82866 294 493 6.41E-48 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 Gene3D G3DSA:3.30.2090.10 707 793 4.7E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82693 40 134 2.96E-22 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82693 558 649 4.97E-12 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 Gene3D G3DSA:3.30.2090.10 181 271 7.4E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 Pfam PF00873 AcrB/AcrD/AcrF family 6 1013 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82866 794 1019 1.15E-43 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 359 380 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 6.3E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82693 135 182 5.23E-19 T 29-03-2018 Y880_RS09985 f48c79798a74782a92f3913c5baf0771 1036 SUPERFAMILY SSF82693 270 326 5.23E-19 T 29-03-2018 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 Pfam PF02274 Amidinotransferase 22 413 2.7E-118 T 29-03-2018 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 PIRSF PIRSF006356 1 416 5.0E-148 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 SUPERFAMILY SSF55909 7 416 6.04E-143 T 29-03-2018 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 PRINTS PR01466 Bacterial arginine deiminase signature 352 369 4.2E-52 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 PRINTS PR01466 Bacterial arginine deiminase signature 395 413 4.2E-52 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 PRINTS PR01466 Bacterial arginine deiminase signature 6 26 4.2E-52 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 PRINTS PR01466 Bacterial arginine deiminase signature 157 175 4.2E-52 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 PRINTS PR01466 Bacterial arginine deiminase signature 372 386 4.2E-52 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 PRINTS PR01466 Bacterial arginine deiminase signature 185 200 4.2E-52 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 Gene3D G3DSA:3.75.10.10 7 414 2.4E-102 T 29-03-2018 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 TIGRFAM TIGR01078 arcA: arginine deiminase 10 416 9.4E-178 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS24445 77b737d3430850bca3b45bc62b2f329e 418 Hamap MF_00242 Arginine deiminase [arcA]. 5 416 49.567 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y880_RS22965 4b1c49336f542caa28c1c038b9989699 209 Gene3D G3DSA:1.10.10.60 1 38 1.2E-13 T 29-03-2018 Y880_RS22965 4b1c49336f542caa28c1c038b9989699 209 SUPERFAMILY SSF46689 2 78 7.18E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS22965 4b1c49336f542caa28c1c038b9989699 209 Gene3D G3DSA:1.10.260.40 39 70 1.5E-7 T 29-03-2018 Y880_RS22965 4b1c49336f542caa28c1c038b9989699 209 Gene3D G3DSA:1.10.357.10 71 203 2.5E-5 T 29-03-2018 Y880_RS22965 4b1c49336f542caa28c1c038b9989699 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.4E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 Pfam PF02597 ThiS family 6 87 8.4E-6 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 SUPERFAMILY SSF69572 91 438 4.97E-96 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 SMART SM00450 372 467 9.4E-13 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 Gene3D G3DSA:3.40.50.720 90 339 8.8E-75 T 29-03-2018 Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 Pfam PF00899 ThiF family 103 336 2.2E-67 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 SUPERFAMILY SSF54285 15 87 3.71E-9 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 Gene3D G3DSA:3.40.250.10 355 469 7.8E-24 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 Gene3D G3DSA:3.10.20.30 10 87 1.5E-6 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS07700 7cf77532e5f8c6e38281ac6ad784cae7 472 Pfam PF00581 Rhodanese-like domain 378 463 6.1E-12 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 Pfam PF00549 CoA-ligase 262 382 1.4E-24 T 29-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 Gene3D G3DSA:3.30.1490.20 21 95 5.8E-26 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 Gene3D G3DSA:3.40.50.261 240 385 1.4E-42 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.519 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 SUPERFAMILY SSF52210 240 384 8.9E-54 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 PIRSF PIRSF001554 1 388 1.6E-157 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 Pfam PF08442 ATP-grasp domain 2 203 3.9E-83 T 29-03-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.4E-177 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 SUPERFAMILY SSF56059 1 237 1.9E-82 T 29-03-2018 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 Gene3D G3DSA:3.30.470.20 96 239 3.8E-54 T 29-03-2018 Y880_RS04980 14a7396624b7f524b09554cb0ddc0fb9 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 29-03-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 SUPERFAMILY SSF47203 230 378 1.05E-51 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 SUPERFAMILY SSF56645 5 242 6.68E-92 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 Gene3D G3DSA:1.20.140.10 222 378 3.4E-55 T 29-03-2018 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 Gene3D G3DSA:1.10.540.10 1 121 1.6E-38 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 8.9E-46 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 119 9.3E-37 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 1.7E-27 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS20480 50c4b03826625ac38c75540e09694b36 378 Gene3D G3DSA:2.40.110.10 122 221 3.3E-40 T 29-03-2018 Y880_RS22440 2bf409278229b3150d341ddf99c95b7a 333 SMART SM00342 243 325 6.4E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS22440 2bf409278229b3150d341ddf99c95b7a 333 Gene3D G3DSA:1.10.10.60 202 280 0.038 T 29-03-2018 Y880_RS22440 2bf409278229b3150d341ddf99c95b7a 333 SUPERFAMILY SSF46689 278 328 8.51E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS22440 2bf409278229b3150d341ddf99c95b7a 333 Gene3D G3DSA:1.10.10.60 281 332 2.0E-13 T 29-03-2018 Y880_RS22440 2bf409278229b3150d341ddf99c95b7a 333 Pfam PF12833 Helix-turn-helix domain 249 327 1.6E-17 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS22440 2bf409278229b3150d341ddf99c95b7a 333 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 199 7.7E-41 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS19305 6bf97d698432b99760287c3ed70b4e25 370 Gene3D G3DSA:3.90.1170.30 39 113 0.0031 T 29-03-2018 Y880_RS19305 6bf97d698432b99760287c3ed70b4e25 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 267 1.6E-24 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS19305 6bf97d698432b99760287c3ed70b4e25 370 Gene3D G3DSA:1.10.287.470 114 160 2.6E-7 T 29-03-2018 Y880_RS19305 6bf97d698432b99760287c3ed70b4e25 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 352 3.6E-75 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS19305 6bf97d698432b99760287c3ed70b4e25 370 Gene3D G3DSA:2.40.50.100 161 354 0.05 T 29-03-2018 Y880_RS19305 6bf97d698432b99760287c3ed70b4e25 370 SUPERFAMILY SSF111369 58 272 1.44E-36 T 29-03-2018 Y880_RS05675 c1228d561139471d16c3afd23595760d 143 SUPERFAMILY SSF140591 24 123 8.63E-28 T 29-03-2018 Y880_RS05675 c1228d561139471d16c3afd23595760d 143 TIGRFAM TIGR02509 type_III_yopR: type III secretion effector, YopR family 16 141 6.1E-48 T 29-03-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 Y880_RS05675 c1228d561139471d16c3afd23595760d 143 Pfam PF09025 YopR, type III needle-polymerisation regulator 54 142 4.9E-22 T 29-03-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 Y880_RS19925 623741c5bec96eef98ac2d2b44a46e39 304 SUPERFAMILY SSF52402 1 147 2.18E-22 T 29-03-2018 Y880_RS19925 623741c5bec96eef98ac2d2b44a46e39 304 Pfam PF00582 Universal stress protein family 177 299 1.3E-14 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS19925 623741c5bec96eef98ac2d2b44a46e39 304 Pfam PF00582 Universal stress protein family 4 145 1.1E-14 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS19925 623741c5bec96eef98ac2d2b44a46e39 304 Gene3D G3DSA:3.40.50.620 1 154 2.8E-19 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS19925 623741c5bec96eef98ac2d2b44a46e39 304 Gene3D G3DSA:3.40.50.620 155 303 3.4E-16 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS19925 623741c5bec96eef98ac2d2b44a46e39 304 SUPERFAMILY SSF52402 163 300 1.42E-14 T 29-03-2018 Y880_RS13960 37531d42b71f4556013fbdb561dcd929 310 Gene3D G3DSA:1.10.3720.10 30 309 3.5E-42 T 29-03-2018 Y880_RS13960 37531d42b71f4556013fbdb561dcd929 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 301 1.3E-11 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS13960 37531d42b71f4556013fbdb561dcd929 310 SUPERFAMILY SSF161098 70 296 3.27E-49 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS27035 af55f09929ed2e94d1582a23ac294bfb 162 Gene3D G3DSA:2.30.110.20 1 162 1.9E-51 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp Y880_RS27035 af55f09929ed2e94d1582a23ac294bfb 162 SUPERFAMILY SSF141452 2 160 2.88E-58 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp Y880_RS27035 af55f09929ed2e94d1582a23ac294bfb 162 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 13 144 9.0E-17 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp Y880_RS27035 af55f09929ed2e94d1582a23ac294bfb 162 Pfam PF05638 Type VI secretion system effector, Hcp 6 136 1.2E-43 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp Y880_RS19485 bed1dda5b58a3fb6c37a198a2dae8687 58 SUPERFAMILY SSF55129 1 57 5.89E-20 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Y880_RS19485 bed1dda5b58a3fb6c37a198a2dae8687 58 Gene3D G3DSA:3.30.1390.20 4 58 7.8E-22 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Y880_RS19485 bed1dda5b58a3fb6c37a198a2dae8687 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.751 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19485 bed1dda5b58a3fb6c37a198a2dae8687 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 57 3.9E-20 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19485 bed1dda5b58a3fb6c37a198a2dae8687 58 PIRSF PIRSF002211 1 58 7.1E-24 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19485 bed1dda5b58a3fb6c37a198a2dae8687 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 52 1.2E-17 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 SUPERFAMILY SSF47203 233 385 6.28E-46 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 Gene3D G3DSA:1.10.540.10 1 125 1.1E-41 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 Gene3D G3DSA:2.40.110.10 126 223 2.9E-41 T 29-03-2018 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 123 1.0E-37 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 PIRSF PIRSF016578 12 387 9.5E-15 T 29-03-2018 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 3.9E-41 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 SUPERFAMILY SSF56645 5 247 5.1E-87 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 5.9E-28 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS07230 3afe3ea853be6511fb1508cbefc0cee3 387 Gene3D G3DSA:1.20.140.10 224 387 2.7E-55 T 29-03-2018 Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 Gene3D G3DSA:3.40.50.620 232 627 3.9E-79 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 SUPERFAMILY SSF56235 1 222 3.17E-61 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 561 1.0E-137 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 Pfam PF00733 Asparagine synthase 257 626 3.5E-120 T 29-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 Pfam PF13537 Glutamine amidotransferase domain 51 173 2.6E-42 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 Gene3D G3DSA:3.60.20.10 1 231 4.1E-54 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 PIRSF PIRSF001589 1 627 8.1E-157 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 SUPERFAMILY SSF52402 245 397 2.93E-89 T 29-03-2018 Y880_RS13780 1e13a43f88976712237b263d4130f7fd 627 SUPERFAMILY SSF52402 481 621 2.93E-89 T 29-03-2018 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 Pfam PF00875 DNA photolyase 8 171 3.7E-44 T 29-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 SUPERFAMILY SSF48173 199 473 1.83E-108 T 29-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 PRINTS PR00147 DNA photolyase signature 389 403 1.1E-22 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 PRINTS PR00147 DNA photolyase signature 350 368 1.1E-22 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 PRINTS PR00147 DNA photolyase signature 330 346 1.1E-22 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 Gene3D G3DSA:1.25.40.80 135 297 8.7E-39 T 29-03-2018 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 Gene3D G3DSA:3.40.50.620 4 134 2.3E-33 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 Pfam PF03441 FAD binding domain of DNA photolyase 280 472 1.1E-81 T 29-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 330 342 - T 29-03-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 Gene3D G3DSA:1.10.579.10 298 475 8.1E-73 T 29-03-2018 Y880_RS21670 4b77b33b61837b5c1e7315dfaceb1bc9 481 SUPERFAMILY SSF52425 6 190 6.8E-51 T 29-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 1.1E-179 T 29-03-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 Pfam PF13433 Periplasmic binding protein domain 31 407 1.4E-174 T 29-03-2018 Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 5.2E-5 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 5.2E-5 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 5.2E-5 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 SUPERFAMILY SSF53822 30 408 6.8E-94 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 Gene3D G3DSA:3.40.50.2300 154 345 6.6E-28 T 29-03-2018 Y880_RS22805 bf33a49cd5e2c18553f2d28a9410eb82 421 Gene3D G3DSA:3.40.50.2300 20 153 1.9E-25 T 29-03-2018 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 Gene3D G3DSA:1.20.200.10 139 394 4.4E-63 T 29-03-2018 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 Pfam PF00206 Lyase 54 327 4.2E-42 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 Gene3D G3DSA:1.10.40.30 397 476 2.8E-15 T 29-03-2018 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 SUPERFAMILY SSF48557 43 480 1.16E-104 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 SMART SM00998 397 476 3.2E-16 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 9.6E-25 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 9.6E-25 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 PRINTS PR00149 Fumarate lyase superfamily signature 309 325 9.6E-25 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 PRINTS PR00149 Fumarate lyase superfamily signature 264 291 9.6E-25 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 PRINTS PR00145 Argininosuccinate lyase family signature 174 194 1.5E-9 T 29-03-2018 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 PRINTS PR00145 Argininosuccinate lyase family signature 264 288 1.5E-9 T 29-03-2018 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 PRINTS PR00145 Argininosuccinate lyase family signature 309 325 1.5E-9 T 29-03-2018 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 Gene3D G3DSA:1.10.275.10 36 138 6.6E-19 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 Pfam PF10397 Adenylosuccinate lyase C-terminus 400 475 8.6E-12 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS15695 28d33c86214d5ede5d095db1edf01a97 483 ProSitePatterns PS00163 Fumarate lyases signature. 309 318 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y880_RS28805 06ca28c3693c98048920910b0f18fa9d 485 Gene3D G3DSA:1.20.1600.10 18 472 8.4E-118 T 29-03-2018 Y880_RS28805 06ca28c3693c98048920910b0f18fa9d 485 SUPERFAMILY SSF56954 57 468 1.26E-120 T 29-03-2018 Y880_RS28805 06ca28c3693c98048920910b0f18fa9d 485 SUPERFAMILY SSF56954 1 30 1.26E-120 T 29-03-2018 Y880_RS28805 06ca28c3693c98048920910b0f18fa9d 485 Pfam PF02321 Outer membrane efflux protein 66 256 7.8E-28 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS28805 06ca28c3693c98048920910b0f18fa9d 485 Pfam PF02321 Outer membrane efflux protein 284 464 4.2E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS28805 06ca28c3693c98048920910b0f18fa9d 485 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 466 7.5E-173 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS27550 189ea325e6402d66987331118c5e7177 500 SUPERFAMILY SSF161098 40 225 2.22E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS27550 189ea325e6402d66987331118c5e7177 500 SUPERFAMILY SSF161098 300 486 5.76E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS27550 189ea325e6402d66987331118c5e7177 500 Gene3D G3DSA:1.10.3720.10 256 500 2.1E-24 T 29-03-2018 Y880_RS27550 189ea325e6402d66987331118c5e7177 500 Gene3D G3DSA:1.10.3720.10 1 238 3.1E-21 T 29-03-2018 Y880_RS27550 189ea325e6402d66987331118c5e7177 500 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 233 1.7E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS27550 189ea325e6402d66987331118c5e7177 500 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 324 490 1.5E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 941 0.0 T 29-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 2.4E-17 T 29-03-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 Gene3D G3DSA:1.10.287.1150 86 170 3.7E-25 T 29-03-2018 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 SUPERFAMILY SSF52518 582 799 5.72E-52 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF02779 Transketolase, pyrimidine binding domain 599 793 1.5E-65 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 PIRSF PIRSF000157 1 943 0.0 T 29-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 797 941 8.2E-55 T 29-03-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 SMART SM00861 599 792 1.3E-56 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 SUPERFAMILY SSF52518 126 550 1.06E-87 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 Gene3D G3DSA:3.40.50.970 171 530 9.1E-89 T 29-03-2018 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 Gene3D G3DSA:3.40.50.970 598 807 4.2E-56 T 29-03-2018 Y880_RS04965 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF00676 Dehydrogenase E1 component 220 525 4.3E-55 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 Y880_RS19510 5795d52f7430457cc585af753fe24d1a 101 SUPERFAMILY SSF57716 2 101 1.14E-37 T 29-03-2018 Y880_RS19510 5795d52f7430457cc585af753fe24d1a 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.573 T 29-03-2018 IPR023036 Ribosomal protein S14, bacterial/plastid Y880_RS19510 5795d52f7430457cc585af753fe24d1a 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 29-03-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19510 5795d52f7430457cc585af753fe24d1a 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 1.2E-24 T 29-03-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19510 5795d52f7430457cc585af753fe24d1a 101 Gene3D G3DSA:4.10.830.10 1 101 8.6E-34 T 29-03-2018 Y880_RS09720 0f8f04acaa73c2c26ac8629b80720935 256 SUPERFAMILY SSF54423 27 86 3.92E-21 T 29-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Y880_RS09720 0f8f04acaa73c2c26ac8629b80720935 256 Gene3D G3DSA:3.10.450.70 32 94 1.4E-21 T 29-03-2018 Y880_RS09720 0f8f04acaa73c2c26ac8629b80720935 256 Pfam PF13098 Thioredoxin-like domain 123 253 5.7E-16 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS09720 0f8f04acaa73c2c26ac8629b80720935 256 Gene3D G3DSA:3.40.30.10 112 254 2.5E-22 T 29-03-2018 Y880_RS09720 0f8f04acaa73c2c26ac8629b80720935 256 SUPERFAMILY SSF52833 96 253 8.25E-38 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS22135 e6315abd66cc3c595038a661e21e1a04 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 3.0E-66 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y880_RS22135 e6315abd66cc3c595038a661e21e1a04 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 1.9E-47 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y880_RS22135 e6315abd66cc3c595038a661e21e1a04 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 65.559 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y880_RS22135 e6315abd66cc3c595038a661e21e1a04 126 PIRSF PIRSF006246 1 125 7.5E-50 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y880_RS22135 e6315abd66cc3c595038a661e21e1a04 126 Gene3D G3DSA:2.40.40.20 1 117 4.8E-48 T 29-03-2018 Y880_RS22135 e6315abd66cc3c595038a661e21e1a04 126 SUPERFAMILY SSF50692 1 120 2.49E-46 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain Y880_RS22135 e6315abd66cc3c595038a661e21e1a04 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.6E-45 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y880_RS25760 cdb9dc2452e323d010c3d8f000b29c7a 318 Gene3D G3DSA:2.70.98.10 12 312 2.2E-60 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Y880_RS25760 cdb9dc2452e323d010c3d8f000b29c7a 318 Pfam PF01263 Aldose 1-epimerase 36 311 2.5E-62 T 29-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 Y880_RS25760 cdb9dc2452e323d010c3d8f000b29c7a 318 PIRSF PIRSF016020 11 312 3.5E-50 T 29-03-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 Y880_RS25760 cdb9dc2452e323d010c3d8f000b29c7a 318 SUPERFAMILY SSF74650 21 309 5.27E-69 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Y880_RS04875 f76ca0caf4fa8c7b017a9ed60b308e3f 453 PIRSF PIRSF002808 2 442 2.8E-78 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 Y880_RS04875 f76ca0caf4fa8c7b017a9ed60b308e3f 453 Gene3D G3DSA:1.20.1250.20 14 212 2.1E-27 T 29-03-2018 Y880_RS04875 f76ca0caf4fa8c7b017a9ed60b308e3f 453 Pfam PF07690 Major Facilitator Superfamily 29 274 7.6E-31 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS04875 f76ca0caf4fa8c7b017a9ed60b308e3f 453 Pfam PF07690 Major Facilitator Superfamily 287 433 6.5E-10 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS04875 f76ca0caf4fa8c7b017a9ed60b308e3f 453 SUPERFAMILY SSF103473 13 428 7.98E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS04875 f76ca0caf4fa8c7b017a9ed60b308e3f 453 Gene3D G3DSA:1.20.1250.20 239 442 2.8E-19 T 29-03-2018 Y880_RS23470 1e3688731b8492805ac252a3748461e9 199 SMART SM00530 23 78 7.0E-12 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS23470 1e3688731b8492805ac252a3748461e9 199 Pfam PF01381 Helix-turn-helix 24 78 4.4E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS23470 1e3688731b8492805ac252a3748461e9 199 Gene3D G3DSA:2.60.120.10 86 199 4.8E-22 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS23470 1e3688731b8492805ac252a3748461e9 199 SUPERFAMILY SSF51182 86 197 1.92E-27 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS23470 1e3688731b8492805ac252a3748461e9 199 Gene3D G3DSA:1.10.260.40 16 85 2.8E-16 T 29-03-2018 Y880_RS23470 1e3688731b8492805ac252a3748461e9 199 SUPERFAMILY SSF47413 18 81 3.38E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS23470 1e3688731b8492805ac252a3748461e9 199 Pfam PF07883 Cupin domain 127 193 5.0E-18 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 SUPERFAMILY SSF48019 213 337 3.57E-32 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 Pfam PF06144 DNA polymerase III, delta subunit 20 191 2.8E-33 T 29-03-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 336 1.9E-111 T 29-03-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 Gene3D G3DSA:3.40.50.300 1 139 2.8E-22 T 29-03-2018 Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 216 339 8.1E-14 T 29-03-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 SUPERFAMILY SSF52540 1 211 5.31E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 Gene3D G3DSA:1.10.8.60 144 221 1.0E-26 T 29-03-2018 Y880_RS18195 ab4ed2f3350f07b282433d3a20b6920e 345 Gene3D G3DSA:1.20.272.10 222 340 7.7E-27 T 29-03-2018 Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 Pfam PF01979 Amidohydrolase family 50 436 1.8E-28 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 SUPERFAMILY SSF51556 54 383 8.85E-109 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 Gene3D G3DSA:3.20.20.140 281 424 1.8E-48 T 29-03-2018 Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 Gene3D G3DSA:3.20.20.140 69 280 2.2E-57 T 29-03-2018 Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 Gene3D G3DSA:2.30.40.10 1 68 4.4E-20 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 3 455 4.6E-176 T 29-03-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 SUPERFAMILY SSF51338 1 53 9.02E-34 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28880 6ea532414df6139429e1b83a4b4466e6 479 SUPERFAMILY SSF51338 383 455 9.02E-34 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS04225 f81a0cd886931e6c483f04065e0a639a 447 Pfam PF04536 TPM domain 76 198 7.4E-37 T 29-03-2018 IPR007621 TPM domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Gene3D G3DSA:3.30.70.270 971 1146 2.9E-62 T 29-03-2018 Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SUPERFAMILY SSF55785 707 843 1.82E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Gene3D G3DSA:3.30.450.20 848 964 5.0E-24 T 29-03-2018 Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SUPERFAMILY SSF55785 480 579 1.47E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SUPERFAMILY SSF55785 283 381 3.77E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SUPERFAMILY SSF55785 569 703 1.13E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Pfam PF00563 EAL domain 1159 1394 2.3E-76 T 29-03-2018 IPR001633 EAL domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00091 584 653 1.7E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00091 853 920 6.1E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00091 717 784 0.83 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00091 292 358 0.025 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 975 1141 4.3E-41 T 29-03-2018 IPR000160 GGDEF domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Gene3D G3DSA:3.20.20.450 1147 1410 3.9E-108 T 29-03-2018 IPR001633 EAL domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00267 967 1143 2.1E-71 T 29-03-2018 IPR000160 GGDEF domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Pfam PF13188 PAS domain 305 349 0.015 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00052 1153 1399 4.5E-126 T 29-03-2018 IPR001633 EAL domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Gene3D G3DSA:3.30.450.20 569 706 1.2E-21 T 29-03-2018 Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Gene3D G3DSA:3.30.450.20 707 847 1.1E-23 T 29-03-2018 Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Pfam PF00990 Diguanylate cyclase, GGDEF domain 978 1139 1.4E-51 T 29-03-2018 IPR000160 GGDEF domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SUPERFAMILY SSF55073 983 1144 3.61E-50 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SUPERFAMILY SSF141868 1158 1405 5.1E-92 T 29-03-2018 IPR001633 EAL domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Pfam PF08447 PAS fold 608 699 4.0E-14 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 713 852 3.5E-11 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 581 712 5.7E-11 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 857 973 1.5E-18 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00086 803 845 7.4E-4 T 29-03-2018 IPR001610 PAC motif Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00086 925 967 1.2E-5 T 29-03-2018 IPR001610 PAC motif Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SMART SM00086 662 705 0.0065 T 29-03-2018 IPR001610 PAC motif Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Gene3D G3DSA:3.30.450.20 419 568 1.6E-13 T 29-03-2018 Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Gene3D G3DSA:3.30.450.20 271 417 1.1E-12 T 29-03-2018 Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Pfam PF13426 PAS domain 865 966 8.6E-17 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 Pfam PF13426 PAS domain 729 844 2.2E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS21350 5c92e32fe2fa80e8fb440081eb2defa6 1415 SUPERFAMILY SSF55785 842 965 4.89E-22 T 29-03-2018 IPR000014 PAS domain Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Gene3D G3DSA:1.10.1040.10 622 713 9.3E-15 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Gene3D G3DSA:1.10.1040.10 499 597 3.0E-22 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 29-03-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 495 2.9E-61 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Gene3D G3DSA:3.40.50.720 308 498 1.1E-46 T 29-03-2018 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 SUPERFAMILY SSF51735 314 496 1.76E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Gene3D G3DSA:3.90.226.10 1 307 7.9E-67 T 29-03-2018 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 SUPERFAMILY SSF48179 622 714 1.28E-23 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 592 4.8E-25 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 212 8.4E-40 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 SUPERFAMILY SSF52096 2 308 8.83E-70 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 SUPERFAMILY SSF48179 496 616 3.57E-29 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 29-03-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS13070 254e600733a48e0c3c113819aaca7056 715 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 52.167 T 29-03-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 Gene3D G3DSA:1.10.10.10 1 83 6.0E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 Pfam PF03466 LysR substrate binding domain 87 289 1.0E-35 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 2.5E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 Gene3D G3DSA:3.40.190.10 84 181 4.7E-18 T 29-03-2018 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 SUPERFAMILY SSF53850 89 293 8.15E-34 T 29-03-2018 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 Gene3D G3DSA:3.40.190.10 182 265 1.3E-10 T 29-03-2018 Y880_RS07760 6da8bf2c988ef235edd837afb39a4f58 317 SUPERFAMILY SSF46785 1 110 7.26E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12320 e8c1158cb0922422f219a89ca50c3941 525 SUPERFAMILY SSF55073 366 522 6.28E-49 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS12320 e8c1158cb0922422f219a89ca50c3941 525 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 359 522 3.1E-52 T 29-03-2018 IPR000160 GGDEF domain Y880_RS12320 e8c1158cb0922422f219a89ca50c3941 525 Gene3D G3DSA:3.30.70.270 360 523 5.8E-58 T 29-03-2018 Y880_RS12320 e8c1158cb0922422f219a89ca50c3941 525 SMART SM00267 350 523 2.5E-63 T 29-03-2018 IPR000160 GGDEF domain Y880_RS12320 e8c1158cb0922422f219a89ca50c3941 525 Pfam PF00990 Diguanylate cyclase, GGDEF domain 361 519 2.4E-47 T 29-03-2018 IPR000160 GGDEF domain Y880_RS12320 e8c1158cb0922422f219a89ca50c3941 525 Gene3D G3DSA:3.30.450.20 201 359 5.1E-10 T 29-03-2018 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 Gene3D G3DSA:3.40.440.10 1 153 2.1E-55 T 29-03-2018 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 Gene3D G3DSA:3.40.440.10 154 266 3.8E-25 T 29-03-2018 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 SUPERFAMILY SSF52540 3 429 4.14E-177 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 SMART SM00788 4 424 1.2E-301 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 29-03-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 8.5E-185 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 Pfam PF00709 Adenylosuccinate synthetase 5 423 2.8E-179 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 Gene3D G3DSA:3.90.170.10 267 430 6.8E-67 T 29-03-2018 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 29-03-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y880_RS23215 61eef1f5fc748b071c0f9ab1c6078cf9 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 219.171 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y880_RS12250 6f7c00e9e3526faa17339e9212ee9e9c 201 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 26 182 6.7E-24 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS12250 6f7c00e9e3526faa17339e9212ee9e9c 201 Gene3D G3DSA:3.40.50.1110 20 201 1.2E-36 T 29-03-2018 Y880_RS12250 6f7c00e9e3526faa17339e9212ee9e9c 201 SUPERFAMILY SSF52266 23 200 3.05E-48 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 SUPERFAMILY SSF52172 2 163 5.98E-32 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 SUPERFAMILY SSF46894 145 207 2.21E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 Gene3D G3DSA:3.40.50.2300 1 125 3.0E-31 T 29-03-2018 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 SMART SM00421 144 201 2.1E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 9.3E-24 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 Gene3D G3DSA:1.10.10.10 126 207 2.6E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 SMART SM00448 2 114 2.2E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 1.6E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 1.6E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 1.6E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS26760 b2eaa970451a2e99e40bef53d015cdf0 207 Pfam PF00072 Response regulator receiver domain 4 113 1.0E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 Pfam PF02743 Cache domain 49 287 7.5E-16 T 29-03-2018 IPR033479 Double Cache domain 1 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 SMART SM00304 381 435 1.2E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 Gene3D G3DSA:1.10.287.950 496 712 2.2E-53 T 29-03-2018 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 495 678 6.3E-45 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 SUPERFAMILY SSF58104 403 712 3.01E-82 T 29-03-2018 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 Gene3D G3DSA:1.10.287.1060 410 495 1.3E-5 T 29-03-2018 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 Gene3D G3DSA:3.30.450.20 224 349 1.3E-10 T 29-03-2018 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 Gene3D G3DSA:3.30.450.20 96 223 1.5E-16 T 29-03-2018 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 Pfam PF00672 HAMP domain 383 431 3.0E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS21525 1b88c98e1f7c511d98cfe6d421635d15 712 SMART SM00283 450 711 1.3E-81 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS14245 76f5f09aed02de3068fb05a54fd47f1c 271 PIRSF PIRSF003092 1 271 1.9E-91 T 29-03-2018 IPR025501 ATP binding protein MinD Y880_RS14245 76f5f09aed02de3068fb05a54fd47f1c 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 267 1.3E-115 T 29-03-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 Y880_RS14245 76f5f09aed02de3068fb05a54fd47f1c 271 Gene3D G3DSA:3.40.50.300 1 255 8.9E-53 T 29-03-2018 Y880_RS14245 76f5f09aed02de3068fb05a54fd47f1c 271 SUPERFAMILY SSF52540 2 268 6.11E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14245 76f5f09aed02de3068fb05a54fd47f1c 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 226 8.2E-20 T 29-03-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Y880_RS02935 8d2eebd93e12cbdb8cb807ce009b242a 232 Gene3D G3DSA:2.60.120.10 131 232 1.5E-22 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS02935 8d2eebd93e12cbdb8cb807ce009b242a 232 Pfam PF02678 Pirin 12 118 2.4E-37 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y880_RS02935 8d2eebd93e12cbdb8cb807ce009b242a 232 Gene3D G3DSA:2.60.120.10 11 130 9.6E-48 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS02935 8d2eebd93e12cbdb8cb807ce009b242a 232 SUPERFAMILY SSF51182 1 231 1.1E-74 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS02935 8d2eebd93e12cbdb8cb807ce009b242a 232 PIRSF PIRSF006232 1 231 3.1E-56 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y880_RS12550 572caa0b758c13bcb5ccfbd196db3f2d 288 SUPERFAMILY SSF56281 8 253 5.42E-51 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS12550 572caa0b758c13bcb5ccfbd196db3f2d 288 Gene3D G3DSA:3.60.15.10 1 288 4.0E-53 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS12550 572caa0b758c13bcb5ccfbd196db3f2d 288 SMART SM00849 15 205 7.6E-24 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS12550 572caa0b758c13bcb5ccfbd196db3f2d 288 Pfam PF00753 Metallo-beta-lactamase superfamily 14 205 4.2E-21 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS20640 d82dfeaab38ebf46de7be4b46eef7082 310 Pfam PF02535 ZIP Zinc transporter 165 305 3.1E-16 T 29-03-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 SMART SM00862 145 216 9.3E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 Pfam PF00072 Response regulator receiver domain 3 112 1.6E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 SMART SM00448 1 112 6.3E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 Gene3D G3DSA:3.40.50.2300 1 120 4.6E-31 T 29-03-2018 Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 SUPERFAMILY SSF52172 1 118 3.7E-35 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 214 1.1E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 Gene3D G3DSA:1.10.10.10 121 221 6.6E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22380 375cb714da64bd57d4587ee763db4569 221 SUPERFAMILY SSF46894 125 216 2.24E-27 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS29200 83605044ca29dc01c55af61bfda600ad 274 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 18 272 32.228 T 29-03-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 Y880_RS29200 83605044ca29dc01c55af61bfda600ad 274 Pfam PF08241 Methyltransferase domain 62 155 2.1E-24 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS29200 83605044ca29dc01c55af61bfda600ad 274 Gene3D G3DSA:3.40.50.150 9 272 8.9E-37 T 29-03-2018 Y880_RS29200 83605044ca29dc01c55af61bfda600ad 274 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 26 272 5.8E-70 T 29-03-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 Y880_RS29200 83605044ca29dc01c55af61bfda600ad 274 SUPERFAMILY SSF53335 24 272 1.69E-42 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS02220 15cae870d2995e3813d2677c278f3010 231 Pfam PF02107 Flagellar L-ring protein 44 230 3.3E-61 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y880_RS02220 15cae870d2995e3813d2677c278f3010 231 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 228 31.326 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y880_RS02220 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 207 221 4.4E-26 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y880_RS02220 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 170 186 4.4E-26 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y880_RS02220 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 66 78 4.4E-26 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y880_RS02220 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 191 205 4.4E-26 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y880_RS02220 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 144 159 4.4E-26 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 Pfam PF01521 Iron-sulphur cluster biosynthesis 4 100 4.7E-10 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 Pfam PF01106 NifU-like domain 114 180 2.3E-21 T 29-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 Gene3D G3DSA:2.60.300.12 1 102 4.1E-16 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 Gene3D G3DSA:3.30.300.130 105 190 9.3E-28 T 29-03-2018 IPR034904 Fe-S cluster assembly domain Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 SUPERFAMILY SSF89360 3 100 1.57E-19 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 3 194 42.281 T 29-03-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 121 180 3.0E-28 T 29-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 SUPERFAMILY SSF117916 98 188 3.05E-26 T 29-03-2018 IPR034904 Fe-S cluster assembly domain Y880_RS06375 67ab129867d0761b776a0d2b1f698782 194 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 4 194 6.8E-96 T 29-03-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 Y880_RS28410 85ec495338e14a016a801223fada8706 461 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 25 448 1.0E-121 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS28410 85ec495338e14a016a801223fada8706 461 Pfam PF00860 Permease family 29 420 1.5E-94 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS28410 85ec495338e14a016a801223fada8706 461 TIGRFAM TIGR03173 pbuX: xanthine permease 33 452 1.7E-128 T 29-03-2018 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 Y880_RS28410 85ec495338e14a016a801223fada8706 461 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 368 388 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 242 284 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 Gene3D G3DSA:2.60.120.10 5 248 7.4E-28 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 Pfam PF12833 Helix-turn-helix domain 211 289 4.6E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 SUPERFAMILY SSF46689 241 289 3.37E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 272 288 8.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 257 272 8.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 Gene3D G3DSA:1.10.10.60 249 300 1.3E-11 T 29-03-2018 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 SMART SM00342 205 288 1.3E-29 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09030 b3796686441ea8107594b8596ff04f3b 301 SUPERFAMILY SSF46689 188 239 1.43E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.389 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 Gene3D G3DSA:1.20.5.1150 16 52 1.2E-18 T 29-03-2018 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 Pfam PF01165 Ribosomal protein S21 4 56 2.0E-22 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 39 5.0E-7 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 2.6E-25 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 29-03-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.1E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.1E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.1E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29605 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.1E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19805 7f69b47648c762bc3a3b63bf68391601 72 Pfam PF04964 Flp/Fap pilin component 15 63 7.0E-16 T 29-03-2018 IPR007047 Flp/Fap pilin component Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 Gene3D G3DSA:3.30.450.20 425 564 1.9E-32 T 29-03-2018 Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 SMART SM00086 518 560 8.1E-5 T 29-03-2018 IPR001610 PAC motif Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 SMART SM00091 446 512 6.3E-15 T 29-03-2018 IPR000014 PAS domain Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 SMART SM00267 560 731 1.9E-63 T 29-03-2018 IPR000160 GGDEF domain Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 443 567 3.9E-23 T 29-03-2018 IPR000014 PAS domain Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 SUPERFAMILY SSF55073 576 731 1.49E-46 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 Pfam PF05228 CHASE4 domain 137 299 4.7E-28 T 29-03-2018 IPR007892 CHASE4 Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 Pfam PF00672 HAMP domain 395 443 9.9E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 SMART SM00304 394 446 3.2E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 Gene3D G3DSA:3.30.70.270 565 735 1.0E-59 T 29-03-2018 Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 Pfam PF00989 PAS fold 447 557 1.1E-15 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 569 727 3.6E-42 T 29-03-2018 IPR000160 GGDEF domain Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 SUPERFAMILY SSF158472 395 443 7.98E-5 T 29-03-2018 Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 SUPERFAMILY SSF55785 433 558 5.32E-28 T 29-03-2018 IPR000014 PAS domain Y880_RS00985 35bdc90cb385a7ad5e638ac204069ae7 735 Pfam PF00990 Diguanylate cyclase, GGDEF domain 571 725 3.1E-45 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25530 5dec5f8cbdc633cc57dbed4e4e8337f0 392 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS25530 5dec5f8cbdc633cc57dbed4e4e8337f0 392 Pfam PF00005 ABC transporter 46 195 9.0E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS25530 5dec5f8cbdc633cc57dbed4e4e8337f0 392 SMART SM00382 52 253 3.5E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS25530 5dec5f8cbdc633cc57dbed4e4e8337f0 392 Gene3D G3DSA:3.40.50.300 1 275 4.2E-65 T 29-03-2018 Y880_RS25530 5dec5f8cbdc633cc57dbed4e4e8337f0 392 TIGRFAM TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein 4 389 5.7E-180 T 29-03-2018 IPR022473 ABC transporter, Choline, ATP-binding subunit GO:0015220|GO:0015871|GO:0055052 Y880_RS25530 5dec5f8cbdc633cc57dbed4e4e8337f0 392 SUPERFAMILY SSF52540 34 274 8.69E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21250 7c22761197499796d41d34606faccc8c 381 Pfam PF01145 SPFH domain / Band 7 family 152 323 3.2E-22 T 29-03-2018 IPR001107 Band 7 domain Y880_RS21250 7c22761197499796d41d34606faccc8c 381 SMART SM00244 148 307 8.4E-15 T 29-03-2018 IPR001107 Band 7 domain Y880_RS21250 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 239 256 2.5E-16 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS21250 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 283 301 2.5E-16 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS21250 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 302 323 2.5E-16 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS21250 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 204 225 2.5E-16 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS21250 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 327 350 2.5E-16 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS21250 7c22761197499796d41d34606faccc8c 381 SUPERFAMILY SSF117892 187 313 7.59E-26 T 29-03-2018 IPR001107 Band 7 domain Y880_RS18525 cedc4bf9ddb63ab6cd09b6db998591f9 154 Pfam PF03477 ATP cone domain 52 136 1.1E-13 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y880_RS18525 cedc4bf9ddb63ab6cd09b6db998591f9 154 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 90.616 T 29-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Y880_RS18525 cedc4bf9ddb63ab6cd09b6db998591f9 154 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 3.2E-72 T 29-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 SUPERFAMILY SSF103515 349 646 5.36E-47 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 SMART SM00869 370 636 1.9E-36 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 PIRSF PIRSF037375 2 646 2.0E-220 T 29-03-2018 IPR017186 Lipase, autotransporter EstA Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 Gene3D G3DSA:2.40.128.130 339 646 1.2E-49 T 29-03-2018 Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 Gene3D G3DSA:3.40.50.1110 15 338 1.4E-59 T 29-03-2018 Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 32 43 - T 29-03-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 32 325 8.3E-14 T 29-03-2018 IPR001087 GDSL lipase/esterase GO:0016788 Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 SUPERFAMILY SSF52266 302 330 1.53E-15 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 SUPERFAMILY SSF52266 111 121 1.53E-15 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 SUPERFAMILY SSF52266 148 265 1.53E-15 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 SUPERFAMILY SSF52266 30 67 1.53E-15 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS24120 4b93af80f61f6ba0e11595608c8b6bec 646 Pfam PF03797 Autotransporter beta-domain 374 626 7.7E-48 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 Gene3D G3DSA:3.40.630.40 174 404 8.9E-56 T 29-03-2018 Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 SMART SM00257 425 468 5.7E-12 T 29-03-2018 IPR018392 LysM domain Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 Pfam PF01476 LysM domain 426 468 1.8E-11 T 29-03-2018 IPR018392 LysM domain Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 SUPERFAMILY SSF53187 324 401 1.26E-54 T 29-03-2018 Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 SUPERFAMILY SSF53187 177 273 1.26E-54 T 29-03-2018 Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 Gene3D G3DSA:3.10.350.10 419 475 8.2E-13 T 29-03-2018 Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 SUPERFAMILY SSF54106 425 468 4.32E-10 T 29-03-2018 IPR018392 LysM domain Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 Pfam PF11741 AMIN domain 34 133 7.0E-23 T 29-03-2018 IPR021731 AMIN domain Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 179 397 1.9E-46 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y880_RS23260 72247f45e10ac31053a5edb8fbb09133 475 SMART SM00646 239 397 1.8E-71 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 SUPERFAMILY SSF53706 6 621 6.67E-128 T 29-03-2018 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Gene3D G3DSA:3.40.50.740 379 436 6.9E-10 T 29-03-2018 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 9 58 2.6E-5 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Pfam PF01568 Molydopterin dinucleotide binding domain 576 694 1.1E-25 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Pfam PF00384 Molybdopterin oxidoreductase 65 482 3.0E-34 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Gene3D G3DSA:2.40.40.20 518 702 5.3E-29 T 29-03-2018 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 SMART SM00926 3 62 4.4E-9 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Gene3D G3DSA:3.40.50.740 67 150 4.6E-14 T 29-03-2018 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Gene3D G3DSA:3.40.228.10 151 378 8.3E-53 T 29-03-2018 Y880_RS15785 715b7f56a4d2acb00b759fa8084fefb4 702 Gene3D G3DSA:2.20.25.90 2 66 1.0E-8 T 29-03-2018 Y880_RS05525 b247c0ca323f93920f157942e67bf7fd 88 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 84 1.1E-34 T 29-03-2018 IPR006306 Type III secretion protein HrpO GO:0006810|GO:0016021 Y880_RS05525 b247c0ca323f93920f157942e67bf7fd 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.8E-24 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS05525 b247c0ca323f93920f157942e67bf7fd 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.8E-24 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS05525 b247c0ca323f93920f157942e67bf7fd 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.8E-24 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS05525 b247c0ca323f93920f157942e67bf7fd 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 6.0E-26 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS05525 b247c0ca323f93920f157942e67bf7fd 88 PIRSF PIRSF004669 1 88 1.7E-25 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 6 331 41.841 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 Gene3D G3DSA:3.20.20.70 2 331 3.5E-77 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 Pfam PF13353 4Fe-4S single cluster domain 22 121 1.1E-6 T 29-03-2018 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 SUPERFAMILY SSF102114 6 278 8.89E-77 T 29-03-2018 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 314 3.3E-38 T 29-03-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 Reactome: R-HSA-947581 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 6 331 8.4E-113 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 SMART SM00729 15 219 2.2E-14 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 21 32 - T 29-03-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 Reactome: R-HSA-947581 Y880_RS04500 34f83a557d7d0969bf4aff943ae18b7b 331 Pfam PF04055 Radical SAM superfamily 20 179 2.0E-30 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS16860 409b9d29a4615c017986454f31a74202 228 SUPERFAMILY SSF160246 4 68 1.2E-13 T 29-03-2018 Y880_RS06210 0441252c6acfccaa254d1dc117920e11 246 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 238 1.1E-88 T 29-03-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06210 0441252c6acfccaa254d1dc117920e11 246 Pfam PF00929 Exonuclease 4 167 7.2E-39 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS06210 0441252c6acfccaa254d1dc117920e11 246 SUPERFAMILY SSF53098 1 177 2.64E-55 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS06210 0441252c6acfccaa254d1dc117920e11 246 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 178 1.4E-64 T 29-03-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS06210 0441252c6acfccaa254d1dc117920e11 246 SMART SM00479 2 176 1.2E-49 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS06210 0441252c6acfccaa254d1dc117920e11 246 Gene3D G3DSA:3.30.420.10 2 181 8.5E-41 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 Gene3D G3DSA:1.10.10.60 1 46 1.1E-17 T 29-03-2018 Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 68 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 1.2E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 1.2E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 SUPERFAMILY SSF46689 11 89 2.19E-19 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 71 9.1E-17 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 SUPERFAMILY SSF48498 97 201 2.25E-8 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 Gene3D G3DSA:1.10.260.40 47 76 6.8E-14 T 29-03-2018 Y880_RS03470 0d76f4527097a54f6f5bb51e313c81d3 204 Gene3D G3DSA:1.10.357.10 77 204 2.2E-14 T 29-03-2018 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 4 324 50.992 T 29-03-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 Gene3D G3DSA:3.20.20.70 9 251 1.1E-59 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 SUPERFAMILY SSF51395 13 322 1.26E-94 T 29-03-2018 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 Gene3D G3DSA:1.10.1200.80 255 330 1.8E-24 T 29-03-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 Pfam PF01207 Dihydrouridine synthase (Dus) 16 320 5.9E-110 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 PIRSF PIRSF006621 3 330 1.8E-107 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 97 115 - T 29-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS22775 cdaf96fb766cfc0e43c06c7b097a97a0 332 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 6 321 1.1E-126 T 29-03-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 Y880_RS02105 b84a7b48b896269c241b8b73b7cd52a4 365 SUPERFAMILY SSF53686 24 337 1.57E-67 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS02105 b84a7b48b896269c241b8b73b7cd52a4 365 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 317 5.0E-43 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS02105 b84a7b48b896269c241b8b73b7cd52a4 365 Gene3D G3DSA:3.40.50.1100 142 330 9.3E-36 T 29-03-2018 Y880_RS02105 b84a7b48b896269c241b8b73b7cd52a4 365 Gene3D G3DSA:3.40.50.1100 35 141 5.0E-24 T 29-03-2018 Y880_RS02580 da8bdb32621162081d376489cc62a711 278 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 6 272 6.8E-117 T 29-03-2018 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y880_RS02580 da8bdb32621162081d376489cc62a711 278 Gene3D G3DSA:2.60.120.10 9 272 7.5E-50 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS02580 da8bdb32621162081d376489cc62a711 278 SUPERFAMILY SSF51182 10 272 7.89E-86 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS02580 da8bdb32621162081d376489cc62a711 278 Pfam PF07883 Cupin domain 195 252 1.5E-7 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS02580 da8bdb32621162081d376489cc62a711 278 Pfam PF07883 Cupin domain 72 141 9.4E-13 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 Gene3D G3DSA:3.50.50.60 1 387 1.1E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 180 195 9.4E-7 T 29-03-2018 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 9.4E-7 T 29-03-2018 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 SUPERFAMILY SSF54862 451 551 9.11E-29 T 29-03-2018 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 57 1.7E-7 T 29-03-2018 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 SUPERFAMILY SSF54373 212 307 2.86E-37 T 29-03-2018 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 SUPERFAMILY SSF51905 308 449 5.19E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 SUPERFAMILY SSF51905 5 212 5.19E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS12755 6088bd3454162d8714711ae6cae2ee06 551 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 447 548 1.9E-50 T 29-03-2018 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 19 207 8.4E-105 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 SUPERFAMILY SSF52096 27 210 6.84E-76 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 128 141 - T 29-03-2018 IPR033135 ClpP, histidine active site Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 35 50 2.0E-52 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 75 95 2.0E-52 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 127 146 2.0E-52 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 184 203 2.0E-52 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 106 123 2.0E-52 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 Gene3D G3DSA:3.90.226.10 18 210 1.7E-45 T 29-03-2018 Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 106 117 - T 29-03-2018 IPR018215 ClpP, Ser active site Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 Pfam PF00574 Clp protease 29 208 1.3E-88 T 29-03-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Y880_RS06130 07e51ed7ba21ae35f08f734999ec04a9 213 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 19 209 43.732 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 55 613 1.1E-162 T 29-03-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 Pfam PF03958 Bacterial type II/III secretion system short domain 281 360 4.8E-16 T 29-03-2018 IPR005644 NolW-like Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 Pfam PF03958 Bacterial type II/III secretion system short domain 210 276 2.9E-13 T 29-03-2018 IPR005644 NolW-like Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 Pfam PF03958 Bacterial type II/III secretion system short domain 146 205 3.0E-9 T 29-03-2018 IPR005644 NolW-like Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 360 370 6.5E-41 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 434 458 6.5E-41 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 569 587 6.5E-41 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 469 479 6.5E-41 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 592 606 6.5E-41 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 Pfam PF00263 Bacterial type II and III secretion system protein 438 605 2.5E-53 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 Y880_RS13550 ed7345952e92e21399103c0b519188a2 658 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 550 583 - T 29-03-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Y880_RS12625 c0b7c7a2d0113d54609957475c3096ee 204 Pfam PF01810 LysE type translocator 14 200 7.4E-30 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS12625 c0b7c7a2d0113d54609957475c3096ee 204 PIRSF PIRSF006324 1 203 5.3E-45 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS05350 aa67ba0526521bd7f841e7dcfdaf206f 135 SUPERFAMILY SSF160719 24 128 4.45E-19 T 29-03-2018 Y880_RS05350 aa67ba0526521bd7f841e7dcfdaf206f 135 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 5 134 2.1E-38 T 29-03-2018 IPR017737 Type VI secretion system, lysozyme-related protein Y880_RS05350 aa67ba0526521bd7f841e7dcfdaf206f 135 Pfam PF04965 Gene 25-like lysozyme 26 113 1.4E-15 T 29-03-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y880_RS05350 aa67ba0526521bd7f841e7dcfdaf206f 135 Gene3D G3DSA:3.10.450.40 4 132 2.0E-19 T 29-03-2018 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 SUPERFAMILY SSF46689 358 440 5.82E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 Pfam PF00158 Sigma-54 interaction domain 146 312 2.7E-66 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 SMART SM00382 166 328 6.1E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:1.10.8.60 318 397 2.5E-21 T 29-03-2018 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 SMART SM00448 5 116 2.5E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 404 421 4.4E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 421 441 4.4E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:3.40.50.300 141 317 1.4E-27 T 29-03-2018 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 SUPERFAMILY SSF52172 3 191 5.83E-44 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:3.40.50.2300 1 140 2.1E-34 T 29-03-2018 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 Pfam PF00072 Response regulator receiver domain 7 115 4.4E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:1.10.10.60 398 441 7.9E-13 T 29-03-2018 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 Pfam PF02954 Bacterial regulatory protein, Fis family 398 438 3.5E-8 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS03585 d98c965a1dfc4ba3fea59828aecb26e3 441 SUPERFAMILY SSF52540 146 375 4.83E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 Gene3D G3DSA:3.40.50.720 2 188 6.2E-53 T 29-03-2018 Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 SUPERFAMILY SSF51735 7 188 2.44E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 317 401 7.0E-7 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 281 3.8E-22 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 187 7.9E-60 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 SUPERFAMILY SSF48179 312 404 2.21E-21 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 Gene3D G3DSA:1.10.1040.10 312 406 1.5E-15 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 Gene3D G3DSA:1.10.1040.10 189 286 2.1E-19 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS24535 eaf1c0f00574326706d4b891f760ef17 411 SUPERFAMILY SSF48179 190 330 2.47E-23 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS28920 06745cb62d870797e8c2991f1dab6860 179 Gene3D G3DSA:3.10.129.10 45 165 1.5E-20 T 29-03-2018 Y880_RS28920 06745cb62d870797e8c2991f1dab6860 179 SUPERFAMILY SSF54637 49 167 2.37E-23 T 29-03-2018 IPR029069 HotDog domain Y880_RS28920 06745cb62d870797e8c2991f1dab6860 179 Pfam PF03061 Thioesterase superfamily 62 135 7.6E-13 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS01015 e9c158e9e59b6a92fcfc011db48ba071 207 Pfam PF02525 Flavodoxin-like fold 17 202 3.4E-31 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS01015 e9c158e9e59b6a92fcfc011db48ba071 207 Gene3D G3DSA:3.40.50.360 18 207 8.2E-35 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS01015 e9c158e9e59b6a92fcfc011db48ba071 207 SUPERFAMILY SSF52218 17 207 1.71E-43 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS08435 c63cfc2bc742fa2cdb9df729c767014a 320 SUPERFAMILY SSF110296 34 288 6.02E-50 T 29-03-2018 Y880_RS08435 c63cfc2bc742fa2cdb9df729c767014a 320 Gene3D G3DSA:2.130.10.10 166 315 3.4E-16 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS08435 c63cfc2bc742fa2cdb9df729c767014a 320 Gene3D G3DSA:2.130.10.10 16 165 7.1E-16 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS08435 c63cfc2bc742fa2cdb9df729c767014a 320 Pfam PF14870 Photosynthesis system II assembly factor YCF48 76 205 2.0E-16 T 29-03-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain Y880_RS21990 a2e21dfa245a3b04ed227be50bd583df 90 Pfam PF04994 TfoX C-terminal domain 1 80 1.0E-27 T 29-03-2018 IPR007077 TfoX, C-terminal Y880_RS21990 a2e21dfa245a3b04ed227be50bd583df 90 Gene3D G3DSA:1.10.150.20 3 81 3.1E-19 T 29-03-2018 Y880_RS16810 9a70588be9e3429d04ccc8819e70d533 231 Gene3D G3DSA:1.20.5.50 24 129 3.3E-5 T 29-03-2018 Y880_RS16810 9a70588be9e3429d04ccc8819e70d533 231 Gene3D G3DSA:1.20.5.320 130 197 0.0036 T 29-03-2018 Y880_RS16810 9a70588be9e3429d04ccc8819e70d533 231 Pfam PF04012 PspA/IM30 family 2 228 6.9E-66 T 29-03-2018 IPR007157 PspA/IM30 Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 Gene3D G3DSA:3.40.50.720 44 247 1.6E-65 T 29-03-2018 Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 Gene3D G3DSA:3.40.50.720 1 43 5.7E-10 T 29-03-2018 Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 1.1E-100 T 29-03-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.6E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.6E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.6E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.6E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.6E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.6E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 1.3E-5 T 29-03-2018 Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.3E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.3E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.3E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 2.3E-63 T 29-03-2018 Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 SUPERFAMILY SSF51735 4 246 6.59E-83 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS12825 f8e6c68d25d7da7825ad10287e89cc1d 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 Gene3D G3DSA:2.40.50.140 658 743 5.4E-18 T 29-03-2018 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 SUPERFAMILY SSF50249 71 151 1.5E-17 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 SMART SM00316 659 742 3.9E-11 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 Hamap MF_01895 Ribonuclease R [rnr]. 42 742 57.11 T 29-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 79 741 1.8E-228 T 29-03-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 Gene3D G3DSA:1.10.10.10 22 81 9.2E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 SMART SM00955 264 598 3.9E-187 T 29-03-2018 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 ProSitePatterns PS01175 Ribonuclease II family signature. 565 589 - T 29-03-2018 IPR022966 Ribonuclease II/R, conserved site Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 SUPERFAMILY SSF50249 142 239 6.43E-18 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 Pfam PF08206 Ribonuclease B OB domain 91 148 5.9E-22 T 29-03-2018 IPR013223 Ribonuclease B, N-terminal OB domain Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 Pfam PF00773 RNB domain 264 597 8.8E-110 T 29-03-2018 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 SUPERFAMILY SSF50249 661 741 2.46E-20 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 SUPERFAMILY SSF50249 224 658 2.97E-146 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 Pfam PF08461 Ribonuclease R winged-helix domain 27 81 4.6E-8 T 29-03-2018 IPR013668 Ribonuclease R winged-helix domain Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 SMART SM00357 90 149 5.1E-12 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 TIGRFAM TIGR02063 RNase_R: ribonuclease R 23 742 2.0E-261 T 29-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Y880_RS23200 6120a531a64cb6a729b28d1c475969af 904 Pfam PF00575 S1 RNA binding domain 659 740 6.9E-11 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS13290 3bdbdaeae51b333c8bdb3c1ab442dc96 158 Gene3D G3DSA:1.10.260.40 6 121 1.0E-5 T 29-03-2018 Y880_RS13290 3bdbdaeae51b333c8bdb3c1ab442dc96 158 SUPERFAMILY SSF47413 12 64 4.07E-5 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 Gene3D G3DSA:3.40.50.720 5 38 2.4E-6 T 29-03-2018 Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 Gene3D G3DSA:3.40.50.720 39 245 2.6E-58 T 29-03-2018 Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 SUPERFAMILY SSF51735 7 244 7.16E-74 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.0E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.0E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.0E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 1.0E-61 T 29-03-2018 Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 4.9E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.9E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.9E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 4.9E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.9E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04320 dab6ebf39794973582a38a58b9385b7d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.9E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19100 e7f4d080afbe0f6c93331831af120fa7 802 Pfam PF07715 TonB-dependent Receptor Plug Domain 149 250 3.2E-16 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS19100 e7f4d080afbe0f6c93331831af120fa7 802 Gene3D G3DSA:2.40.170.20 259 801 9.3E-79 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS19100 e7f4d080afbe0f6c93331831af120fa7 802 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 151 800 4.3E-108 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS19100 e7f4d080afbe0f6c93331831af120fa7 802 Pfam PF00593 TonB dependent receptor 341 801 1.1E-53 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS19100 e7f4d080afbe0f6c93331831af120fa7 802 SUPERFAMILY SSF56935 141 801 2.75E-125 T 29-03-2018 Y880_RS19100 e7f4d080afbe0f6c93331831af120fa7 802 SMART SM00965 47 97 2.5E-8 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS19100 e7f4d080afbe0f6c93331831af120fa7 802 Gene3D G3DSA:2.170.130.10 105 258 1.0E-21 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS08665 167b5416fc9958ee32d21006f036ce71 591 Pfam PF05199 GMC oxidoreductase 446 571 1.9E-26 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y880_RS08665 167b5416fc9958ee32d21006f036ce71 591 Pfam PF00732 GMC oxidoreductase 199 344 8.1E-9 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS08665 167b5416fc9958ee32d21006f036ce71 591 Gene3D G3DSA:3.50.50.60 2 587 2.4E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08665 167b5416fc9958ee32d21006f036ce71 591 SUPERFAMILY SSF51905 521 582 1.62E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08665 167b5416fc9958ee32d21006f036ce71 591 SUPERFAMILY SSF51905 7 341 1.62E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08665 167b5416fc9958ee32d21006f036ce71 591 SUPERFAMILY SSF54373 418 494 2.12E-10 T 29-03-2018 Y880_RS19470 fe6b616d3fd6ca324a32be2c6f1e9388 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 3.0E-10 T 29-03-2018 Y880_RS19470 fe6b616d3fd6ca324a32be2c6f1e9388 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19470 fe6b616d3fd6ca324a32be2c6f1e9388 38 SUPERFAMILY SSF57840 1 38 2.75E-17 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19470 fe6b616d3fd6ca324a32be2c6f1e9388 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 6.0E-22 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19470 fe6b616d3fd6ca324a32be2c6f1e9388 38 Pfam PF00444 Ribosomal protein L36 1 38 6.1E-21 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19470 fe6b616d3fd6ca324a32be2c6f1e9388 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 18.137 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS24750 b61207c6e733c42eff138aee9df95147 152 Gene3D G3DSA:3.10.590.10 1 152 4.2E-57 T 29-03-2018 Y880_RS24750 b61207c6e733c42eff138aee9df95147 152 SUPERFAMILY SSF88697 3 151 9.94E-58 T 29-03-2018 IPR015947 PUA-like domain Y880_RS24750 b61207c6e733c42eff138aee9df95147 152 Pfam PF01878 EVE domain 3 147 2.3E-52 T 29-03-2018 IPR002740 EVE domain Y880_RS12545 b7431f9205479dd732227f43e3bcb247 343 SUPERFAMILY SSF81345 4 342 9.15E-77 T 29-03-2018 IPR029022 ABC transporter, BtuC-like Y880_RS12545 b7431f9205479dd732227f43e3bcb247 343 Pfam PF01032 FecCD transport family 22 341 3.5E-86 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 Y880_RS12545 b7431f9205479dd732227f43e3bcb247 343 Gene3D G3DSA:1.10.3470.10 4 343 2.4E-70 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS20920 dc2b5c1a70d22feb79de5f584eaa7a09 188 Gene3D G3DSA:3.40.80.10 4 188 5.2E-51 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS20920 dc2b5c1a70d22feb79de5f584eaa7a09 188 SUPERFAMILY SSF55846 8 181 3.01E-65 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS20920 dc2b5c1a70d22feb79de5f584eaa7a09 188 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 30 169 3.6E-27 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS20920 dc2b5c1a70d22feb79de5f584eaa7a09 188 SMART SM00644 18 169 1.6E-60 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS10025 cf8096f28a1c54530dfa1b92f9582272 165 SUPERFAMILY SSF52833 1 163 1.64E-42 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS10025 cf8096f28a1c54530dfa1b92f9582272 165 Gene3D G3DSA:3.40.30.10 6 165 3.6E-21 T 29-03-2018 Y880_RS10025 cf8096f28a1c54530dfa1b92f9582272 165 Hamap MF_00269 Probable thiol peroxidase [tpx]. 3 165 38.273 T 29-03-2018 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 Y880_RS10025 cf8096f28a1c54530dfa1b92f9582272 165 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 29-03-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 Y880_RS10025 cf8096f28a1c54530dfa1b92f9582272 165 Pfam PF08534 Redoxin 19 162 1.1E-27 T 29-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 Pfam PF01370 NAD dependent epimerase/dehydratase family 320 567 9.6E-44 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 Pfam PF02911 Formyl transferase, C-terminal domain 204 279 1.3E-15 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 SUPERFAMILY SSF51735 319 652 8.0E-71 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 Gene3D G3DSA:3.40.50.170 2 204 3.8E-49 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 PIRSF PIRSF036506 3 661 0.0 T 29-03-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 Pfam PF00551 Formyl transferase 28 175 5.4E-26 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 3 661 61.354 T 29-03-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 Gene3D G3DSA:3.10.25.10 205 308 1.9E-18 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 SUPERFAMILY SSF50486 207 300 6.75E-21 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 Gene3D G3DSA:3.40.50.720 316 660 8.0E-48 T 29-03-2018 Y880_RS15890 2faeea9b2aca679531bf023ed05cd679 662 SUPERFAMILY SSF53328 5 204 1.83E-54 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS17765 a4f60c82469230d53d497ecb245468b3 239 Pfam PF15579 Immunity protein 52 139 234 9.8E-26 T 29-03-2018 IPR028969 Immunity protein 52 Y880_RS17765 a4f60c82469230d53d497ecb245468b3 239 PIRSF PIRSF029636 10 239 4.4E-96 T 29-03-2018 IPR016929 Uncharacterised conserved protein UCP029636 Y880_RS28510 d1b0b20db60c040f155cfea547bed9b3 495 Gene3D G3DSA:3.30.830.10 285 483 2.2E-35 T 29-03-2018 Y880_RS28510 d1b0b20db60c040f155cfea547bed9b3 495 Pfam PF00675 Insulinase (Peptidase family M16) 80 206 3.7E-5 T 29-03-2018 IPR011765 Peptidase M16, N-terminal Y880_RS28510 d1b0b20db60c040f155cfea547bed9b3 495 Gene3D G3DSA:3.30.830.10 42 279 1.2E-40 T 29-03-2018 Y880_RS28510 d1b0b20db60c040f155cfea547bed9b3 495 Pfam PF05193 Peptidase M16 inactive domain 230 405 8.8E-31 T 29-03-2018 IPR007863 Peptidase M16, C-terminal Y880_RS28510 d1b0b20db60c040f155cfea547bed9b3 495 SUPERFAMILY SSF63411 290 473 5.67E-44 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y880_RS28510 d1b0b20db60c040f155cfea547bed9b3 495 SUPERFAMILY SSF63411 62 267 7.0E-42 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y880_RS03860 f5c48210fc4f7990d965243ba8ef2dda 337 Gene3D G3DSA:3.40.50.720 1 207 3.3E-39 T 29-03-2018 Y880_RS03860 f5c48210fc4f7990d965243ba8ef2dda 337 SUPERFAMILY SSF51735 1 335 1.12E-93 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS03860 f5c48210fc4f7990d965243ba8ef2dda 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.4E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS03860 f5c48210fc4f7990d965243ba8ef2dda 337 Gene3D G3DSA:3.90.25.10 208 254 1.5E-9 T 29-03-2018 Y880_RS03860 f5c48210fc4f7990d965243ba8ef2dda 337 Gene3D G3DSA:3.90.25.10 255 337 8.1E-24 T 29-03-2018 Y880_RS03860 f5c48210fc4f7990d965243ba8ef2dda 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 2.9E-142 T 29-03-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-70370 Y880_RS15295 5bb05d9c71f07ac6e0117b755813ae37 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS15295 5bb05d9c71f07ac6e0117b755813ae37 234 Pfam PF00106 short chain dehydrogenase 6 178 1.2E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15295 5bb05d9c71f07ac6e0117b755813ae37 234 Gene3D G3DSA:3.40.50.720 5 234 8.4E-44 T 29-03-2018 Y880_RS15295 5bb05d9c71f07ac6e0117b755813ae37 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.0E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15295 5bb05d9c71f07ac6e0117b755813ae37 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.0E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15295 5bb05d9c71f07ac6e0117b755813ae37 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.0E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15295 5bb05d9c71f07ac6e0117b755813ae37 234 SUPERFAMILY SSF51735 6 232 7.3E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18860 8bd6b672d5397a835957a7ec2b8865bb 259 SUPERFAMILY SSF56529 39 249 3.14E-70 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS18860 8bd6b672d5397a835957a7ec2b8865bb 259 Gene3D G3DSA:3.90.850.10 40 258 1.8E-68 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS18860 8bd6b672d5397a835957a7ec2b8865bb 259 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 246 6.9E-121 T 29-03-2018 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 Y880_RS18860 8bd6b672d5397a835957a7ec2b8865bb 259 Gene3D G3DSA:2.30.30.370 1 39 2.4E-19 T 29-03-2018 Y880_RS18860 8bd6b672d5397a835957a7ec2b8865bb 259 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 46 244 1.2E-56 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 SMART SM00895 92 215 1.2E-19 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 72 4.7E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 SUPERFAMILY SSF48008 91 214 9.42E-29 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 Gene3D G3DSA:1.10.10.10 5 74 6.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 Pfam PF07729 FCD domain 94 213 2.4E-28 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 SUPERFAMILY SSF46785 7 76 2.08E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 SMART SM00345 13 72 7.8E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 Gene3D G3DSA:1.20.120.530 75 215 1.6E-30 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 3.6E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS05180 25581296abccfe670802b8c13ca124d4 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 3.6E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS06610 08f8e4bf506c4a25d150d716c3575a70 245 Gene3D G3DSA:3.40.630.30 6 152 0.0097 T 29-03-2018 Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 SUPERFAMILY SSF56042 172 338 3.59E-62 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 336 2.4E-142 T 29-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 SUPERFAMILY SSF55326 8 171 2.09E-51 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 347 45.693 T 29-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 165 3.1E-15 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Gene3D G3DSA:3.90.650.10 172 348 3.1E-62 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Gene3D G3DSA:3.30.1330.10 34 162 7.7E-51 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS01525 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 337 6.9E-39 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS20075 4b6e980a69dfb4dc74b16ea627180eee 766 Pfam PF07664 Ferrous iron transport protein B C terminus 452 504 5.6E-22 T 29-03-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Y880_RS20075 4b6e980a69dfb4dc74b16ea627180eee 766 Gene3D G3DSA:3.40.50.300 2 272 4.2E-32 T 29-03-2018 Y880_RS20075 4b6e980a69dfb4dc74b16ea627180eee 766 Pfam PF02421 Ferrous iron transport protein B 6 163 8.0E-63 T 29-03-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 Y880_RS20075 4b6e980a69dfb4dc74b16ea627180eee 766 Pfam PF07670 Nucleoside recognition 349 442 2.6E-13 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Y880_RS20075 4b6e980a69dfb4dc74b16ea627180eee 766 Pfam PF07670 Nucleoside recognition 509 687 2.3E-36 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Y880_RS20075 4b6e980a69dfb4dc74b16ea627180eee 766 SUPERFAMILY SSF52540 4 167 8.82E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20075 4b6e980a69dfb4dc74b16ea627180eee 766 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 685 5.4E-210 T 29-03-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Gene3D G3DSA:3.40.50.300 188 373 1.7E-23 T 29-03-2018 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 888 0.0 T 29-03-2018 IPR017729 Type VI secretion system, ATPase ClpV1 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 SUPERFAMILY SSF81923 12 133 1.41E-17 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Pfam PF07724 AAA domain (Cdc48 subfamily) 631 797 3.4E-38 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 234 367 2.3E-9 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 681 699 4.6E-30 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 710 728 4.6E-30 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 743 757 4.6E-30 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 636 654 4.6E-30 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 804 878 1.1E-12 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 SUPERFAMILY SSF52540 190 519 9.83E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Gene3D G3DSA:1.10.1780.10 2 162 3.5E-21 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 SMART SM00382 632 775 2.5E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 SMART SM00382 229 370 4.8E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 SMART SM01086 804 896 5.4E-11 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 325 337 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 SUPERFAMILY SSF52540 581 878 5.57E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Gene3D G3DSA:3.40.50.300 583 816 8.5E-36 T 29-03-2018 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Gene3D G3DSA:1.10.8.60 817 902 1.5E-12 T 29-03-2018 Y880_RS27060 f6fc59ad685750f564a0dbfcc7a0af35 902 Gene3D G3DSA:1.10.8.60 375 582 6.8E-38 T 29-03-2018 Y880_RS24115 2332afe41d43202663eb4fe2f96612d8 176 ProSitePatterns PS00934 Glyoxalase I signature 1. 26 47 - T 29-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y880_RS24115 2332afe41d43202663eb4fe2f96612d8 176 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 24 164 1.4E-23 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS24115 2332afe41d43202663eb4fe2f96612d8 176 ProSitePatterns PS00935 Glyoxalase I signature 2. 109 125 - T 29-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y880_RS24115 2332afe41d43202663eb4fe2f96612d8 176 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 12 168 3.9E-51 T 29-03-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y880_RS24115 2332afe41d43202663eb4fe2f96612d8 176 Gene3D G3DSA:3.10.180.10 22 170 1.0E-35 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS24115 2332afe41d43202663eb4fe2f96612d8 176 SUPERFAMILY SSF54593 9 167 2.82E-37 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Gene3D G3DSA:3.40.190.10 181 264 9.7E-11 T 29-03-2018 Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Pfam PF03466 LysR substrate binding domain 89 291 2.5E-29 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 SUPERFAMILY SSF53850 91 292 2.17E-29 T 29-03-2018 Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.4E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Gene3D G3DSA:1.10.10.10 1 85 7.0E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 SUPERFAMILY SSF46785 5 84 1.68E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Gene3D G3DSA:3.40.190.10 90 180 3.0E-13 T 29-03-2018 Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.0E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.0E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12365 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.0E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08590 7e54c42afa09c171220c77b794558363 272 Gene3D G3DSA:1.10.260.40 1 64 2.6E-5 T 29-03-2018 Y880_RS18265 d26fd1278364cd248ecc39fafeb99043 155 SUPERFAMILY SSF75217 1 154 1.1E-47 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases Y880_RS18265 d26fd1278364cd248ecc39fafeb99043 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 3.6E-47 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS18265 d26fd1278364cd248ecc39fafeb99043 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 4.4E-61 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS18265 d26fd1278364cd248ecc39fafeb99043 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 28.112 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS18265 d26fd1278364cd248ecc39fafeb99043 155 PIRSF PIRSF004505 1 155 7.8E-42 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS18265 d26fd1278364cd248ecc39fafeb99043 155 Gene3D G3DSA:3.40.1280.10 1 155 2.2E-49 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y880_RS26685 e0adbf0c836c3cd09f6fb730e80ecdfb 341 Gene3D G3DSA:3.10.350.10 24 81 1.1E-14 T 29-03-2018 Y880_RS26685 e0adbf0c836c3cd09f6fb730e80ecdfb 341 Pfam PF01476 LysM domain 31 76 5.6E-13 T 29-03-2018 IPR018392 LysM domain Y880_RS26685 e0adbf0c836c3cd09f6fb730e80ecdfb 341 SMART SM00257 30 78 0.0023 T 29-03-2018 IPR018392 LysM domain Y880_RS26685 e0adbf0c836c3cd09f6fb730e80ecdfb 341 SUPERFAMILY SSF54106 30 77 3.4E-7 T 29-03-2018 IPR018392 LysM domain Y880_RS20675 a3630f1442726f9fecfa3794467981d0 480 Pfam PF01523 Putative modulator of DNA gyrase 38 330 2.8E-69 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS20675 a3630f1442726f9fecfa3794467981d0 480 SUPERFAMILY SSF111283 26 478 1.28E-131 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS20675 a3630f1442726f9fecfa3794467981d0 480 Gene3D G3DSA:3.30.2290.10 23 238 1.8E-58 T 29-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain Y880_RS20675 a3630f1442726f9fecfa3794467981d0 480 PIRSF PIRSF004919 20 479 9.2E-141 T 29-03-2018 IPR025502 TldD Y880_RS10410 4bd35991ec20e548dab7224b5bb9243d 355 SUPERFAMILY SSF51679 12 343 4.97E-79 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS10410 4bd35991ec20e548dab7224b5bb9243d 355 Gene3D G3DSA:3.20.20.30 3 348 3.1E-76 T 29-03-2018 Y880_RS10410 4bd35991ec20e548dab7224b5bb9243d 355 Pfam PF00296 Luciferase-like monooxygenase 14 317 2.9E-75 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS12285 fb2ca7db82659030398f609e89f7810a 340 Pfam PF03280 Proteobacterial lipase chaperone protein 135 325 2.1E-54 T 29-03-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 Y880_RS12285 fb2ca7db82659030398f609e89f7810a 340 SUPERFAMILY SSF158855 63 335 1.27E-78 T 29-03-2018 Y880_RS12285 fb2ca7db82659030398f609e89f7810a 340 Hamap MF_00790 Lipase chaperone [lifO]. 1 333 24.267 T 29-03-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 SUPERFAMILY SSF54523 34 140 1.62E-26 T 29-03-2018 Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 2.7E-8 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 3.1E-8 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 Gene3D G3DSA:3.30.700.10 22 139 9.8E-17 T 29-03-2018 Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 1.5E-11 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 1.5E-11 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 141 1.1E-57 T 29-03-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Y880_RS10805 9c22b1c61f6ee760b81ec34d88301139 144 Pfam PF08334 Type II secretion system (T2SS), protein G 31 139 3.4E-33 T 29-03-2018 IPR013545 Type II secretion system protein G Y880_RS18725 f6a6626235bdc69779f747b874805332 419 SUPERFAMILY SSF103473 9 400 1.02E-73 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS18725 f6a6626235bdc69779f747b874805332 419 Gene3D G3DSA:1.20.1250.20 4 208 2.8E-36 T 29-03-2018 Y880_RS18725 f6a6626235bdc69779f747b874805332 419 Pfam PF07690 Major Facilitator Superfamily 18 362 8.3E-47 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS18725 f6a6626235bdc69779f747b874805332 419 Gene3D G3DSA:1.20.1250.20 209 401 3.2E-27 T 29-03-2018 Y880_RS22245 e9dbf5c1c80064813d5d6d2569566ac6 283 Pfam PF00809 Pterin binding enzyme 25 264 6.7E-86 T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS22245 e9dbf5c1c80064813d5d6d2569566ac6 283 Gene3D G3DSA:3.20.20.20 3 283 3.6E-111 T 29-03-2018 Y880_RS22245 e9dbf5c1c80064813d5d6d2569566ac6 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 58 71 - T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS22245 e9dbf5c1c80064813d5d6d2569566ac6 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 24 278 3.2E-101 T 29-03-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Y880_RS22245 e9dbf5c1c80064813d5d6d2569566ac6 283 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 24 39 - T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS22245 e9dbf5c1c80064813d5d6d2569566ac6 283 SUPERFAMILY SSF51717 11 279 8.63E-105 T 29-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 SUPERFAMILY SSF46946 2 114 3.01E-48 T 29-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 PIRSF PIRSF002134 1 118 2.6E-44 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 29-03-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 Gene3D G3DSA:1.10.8.50 1 66 2.7E-25 T 29-03-2018 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.697 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 Gene3D G3DSA:4.10.910.10 67 84 4.4E-18 T 29-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 Gene3D G3DSA:4.10.910.10 85 118 1.8E-26 T 29-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 3.1E-33 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19465 cd04fee333f03d42c7419d33aa6a7bd3 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 4.5E-55 T 29-03-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 20 37 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 391 486 1.7E-13 T 29-03-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 44 56 2.3E-29 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 357 369 2.3E-29 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 89 101 2.3E-29 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 323 329 2.3E-29 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 15 27 2.3E-29 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 28 38 2.3E-29 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 Gene3D G3DSA:3.30.9.10 198 330 4.8E-36 T 29-03-2018 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 Gene3D G3DSA:3.30.9.10 93 197 5.1E-21 T 29-03-2018 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 SUPERFAMILY SSF51905 15 306 7.93E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 Pfam PF01266 FAD dependent oxidoreductase 16 369 3.5E-49 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 362 372 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS16065 4eba159aa1670739e700bb1bb182c000 512 Gene3D G3DSA:3.50.50.60 3 84 5.5E-4 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 233 6.0E-20 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 SUPERFAMILY SSF56645 1 258 1.44E-72 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 Gene3D G3DSA:2.40.110.10 133 249 4.5E-35 T 29-03-2018 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 128 6.7E-18 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 Gene3D G3DSA:1.20.140.10 250 407 9.0E-40 T 29-03-2018 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 245 393 1.9E-32 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 Gene3D G3DSA:1.10.540.10 1 132 4.6E-36 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS10120 488bf81bed2c3378330cfc07d7968401 409 SUPERFAMILY SSF47203 243 401 3.87E-44 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 SUPERFAMILY SSF46785 2 62 3.95E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 3.6E-22 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 SUPERFAMILY SSF54909 65 146 5.77E-19 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 SMART SM00344 3 112 3.1E-42 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 5.2E-19 T 29-03-2018 Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.6E-15 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.6E-15 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.6E-15 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 Gene3D G3DSA:3.30.70.920 56 148 5.0E-24 T 29-03-2018 Y880_RS07590 da855b455e6a2eed66232f3126b93067 158 Gene3D G3DSA:1.10.10.10 1 54 4.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26845 cabf0e00fab0d23b4fa0025efdc2f729 221 Gene3D G3DSA:3.40.50.10070 32 166 3.7E-12 T 29-03-2018 Y880_RS26845 cabf0e00fab0d23b4fa0025efdc2f729 221 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 15 214 7.5E-95 T 29-03-2018 IPR008517 Protein of unknown function DUF799 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 Gene3D G3DSA:3.30.230.10 545 779 7.4E-28 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 Gene3D G3DSA:3.40.50.300 39 463 1.5E-6 T 29-03-2018 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 SUPERFAMILY SSF52540 35 109 9.58E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 SUPERFAMILY SSF52540 313 536 9.58E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 SUPERFAMILY SSF54211 565 757 3.07E-34 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 650 754 1.4E-7 T 29-03-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 Pfam PF13654 AAA domain 30 540 1.5E-179 T 29-03-2018 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 677 696 6.1E-13 T 29-03-2018 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 566 582 6.1E-13 T 29-03-2018 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 647 666 6.1E-13 T 29-03-2018 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 707 725 6.1E-13 T 29-03-2018 Y880_RS21215 7eb8d35e6d1fe138955466f947c8c0e0 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 66 85 6.1E-13 T 29-03-2018 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 Gene3D G3DSA:3.20.20.60 167 325 1.2E-56 T 29-03-2018 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 PRINTS PR01050 Pyruvate kinase family signature 298 316 2.9E-49 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 PRINTS PR01050 Pyruvate kinase family signature 273 297 2.9E-49 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 PRINTS PR01050 Pyruvate kinase family signature 221 247 2.9E-49 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 PRINTS PR01050 Pyruvate kinase family signature 248 272 2.9E-49 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 PRINTS PR01050 Pyruvate kinase family signature 61 77 2.9E-49 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 PRINTS PR01050 Pyruvate kinase family signature 317 333 2.9E-49 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 PRINTS PR01050 Pyruvate kinase family signature 188 202 2.9E-49 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 Pfam PF02887 Pyruvate kinase, alpha/beta domain 361 476 1.9E-26 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 Pfam PF00224 Pyruvate kinase, barrel domain 4 342 1.6E-122 T 29-03-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 Gene3D G3DSA:2.40.33.10 104 166 2.5E-20 T 29-03-2018 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 Gene3D G3DSA:3.40.1380.20 326 479 4.6E-41 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 SUPERFAMILY SSF50800 72 165 4.36E-25 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 4 478 3.6E-159 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 SUPERFAMILY SSF51621 169 343 6.63E-92 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 SUPERFAMILY SSF51621 2 77 6.63E-92 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 Gene3D G3DSA:3.20.20.60 1 103 7.2E-17 T 29-03-2018 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 ProSitePatterns PS00110 Pyruvate kinase active site signature. 216 228 - T 29-03-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS19930 6d73115d428a6affc3860c18af9df46b 483 SUPERFAMILY SSF52935 327 479 5.36E-36 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 347 398 4.4E-16 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 49 109 3.5E-18 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 SUPERFAMILY SSF56014 409 554 7.59E-42 T 29-03-2018 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 415 555 1.5E-12 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 274 2.2E-38 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 Gene3D G3DSA:3.30.413.10 409 557 4.5E-35 T 29-03-2018 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 SUPERFAMILY SSF55124 253 277 5.72E-28 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 SUPERFAMILY SSF55124 316 423 5.72E-28 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 PRINTS PR00397 Sirohaem Fe-binding site signature 412 430 9.0E-5 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 PRINTS PR00397 Sirohaem Fe-binding site signature 458 476 9.0E-5 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 SUPERFAMILY SSF56014 120 286 2.22E-46 T 29-03-2018 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 Gene3D G3DSA:3.90.480.10 216 406 3.4E-31 T 29-03-2018 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 SUPERFAMILY SSF55124 1 126 5.72E-31 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y880_RS18900 1ee9bcab36d9140187f53a31acdeae41 557 Gene3D G3DSA:3.90.480.10 53 202 1.8E-20 T 29-03-2018 Y880_RS18445 f6601e63d6ad4892948e772760710a9a 389 Gene3D G3DSA:3.30.390.10 1 114 3.4E-50 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS18445 f6601e63d6ad4892948e772760710a9a 389 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 44 133 3.2E-5 T 29-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Y880_RS18445 f6601e63d6ad4892948e772760710a9a 389 Gene3D G3DSA:3.20.20.120 115 371 1.1E-39 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS18445 f6601e63d6ad4892948e772760710a9a 389 SUPERFAMILY SSF51604 122 376 7.53E-44 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS18445 f6601e63d6ad4892948e772760710a9a 389 SMART SM00922 162 259 6.2E-13 T 29-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Y880_RS18445 f6601e63d6ad4892948e772760710a9a 389 SUPERFAMILY SSF54826 1 136 2.92E-26 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS18445 f6601e63d6ad4892948e772760710a9a 389 Pfam PF13378 Enolase C-terminal domain-like 166 374 3.8E-32 T 29-03-2018 IPR029065 Enolase C-terminal domain-like Y880_RS15950 389f4d1ab6f79689ea0a3d056794389e 306 Pfam PF03466 LysR substrate binding domain 88 294 3.7E-43 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS15950 389f4d1ab6f79689ea0a3d056794389e 306 SUPERFAMILY SSF53850 88 299 6.67E-41 T 29-03-2018 Y880_RS15950 389f4d1ab6f79689ea0a3d056794389e 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.3E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15950 389f4d1ab6f79689ea0a3d056794389e 306 Gene3D G3DSA:1.10.10.10 1 84 1.2E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15950 389f4d1ab6f79689ea0a3d056794389e 306 Gene3D G3DSA:3.40.190.10 177 265 1.4E-26 T 29-03-2018 Y880_RS15950 389f4d1ab6f79689ea0a3d056794389e 306 Gene3D G3DSA:3.40.190.10 88 176 1.4E-17 T 29-03-2018 Y880_RS15950 389f4d1ab6f79689ea0a3d056794389e 306 SUPERFAMILY SSF46785 2 112 3.03E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23930 4db2d126b982d1d33df12921cde75035 244 SUPERFAMILY SSF52540 1 239 1.06E-82 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23930 4db2d126b982d1d33df12921cde75035 244 PIRSF PIRSF039085 1 244 4.2E-106 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y880_RS23930 4db2d126b982d1d33df12921cde75035 244 SMART SM00382 30 217 2.5E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS23930 4db2d126b982d1d33df12921cde75035 244 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS23930 4db2d126b982d1d33df12921cde75035 244 Gene3D G3DSA:3.40.50.300 1 243 4.1E-76 T 29-03-2018 Y880_RS23930 4db2d126b982d1d33df12921cde75035 244 Pfam PF00005 ABC transporter 22 169 8.4E-38 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS10670 e7831c7472d754bf76a418611e7d06f9 269 Gene3D G3DSA:3.40.50.150 8 254 1.0E-20 T 29-03-2018 Y880_RS10670 e7831c7472d754bf76a418611e7d06f9 269 Pfam PF08241 Methyltransferase domain 68 162 4.0E-16 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS10670 e7831c7472d754bf76a418611e7d06f9 269 SUPERFAMILY SSF53335 55 201 6.02E-27 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS24375 24850e19ef94e9a1da53a85ce07c3a2c 492 Pfam PF02321 Outer membrane efflux protein 296 472 2.0E-18 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS24375 24850e19ef94e9a1da53a85ce07c3a2c 492 Pfam PF02321 Outer membrane efflux protein 73 263 6.2E-23 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS24375 24850e19ef94e9a1da53a85ce07c3a2c 492 SUPERFAMILY SSF56954 64 478 4.97E-97 T 29-03-2018 Y880_RS24375 24850e19ef94e9a1da53a85ce07c3a2c 492 SUPERFAMILY SSF56954 8 39 4.97E-97 T 29-03-2018 Y880_RS24375 24850e19ef94e9a1da53a85ce07c3a2c 492 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 474 1.7E-125 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS24375 24850e19ef94e9a1da53a85ce07c3a2c 492 Gene3D G3DSA:1.20.1600.10 28 480 2.0E-86 T 29-03-2018 Y880_RS20495 0ed0ee5e702838f652009009a6127f7e 364 Hamap MF_01919 Cell division protein ZapE [zapE]. 1 364 54.614 T 29-03-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 Y880_RS20495 0ed0ee5e702838f652009009a6127f7e 364 Pfam PF03969 AFG1-like ATPase 1 360 1.1E-169 T 29-03-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y880_RS20495 0ed0ee5e702838f652009009a6127f7e 364 Gene3D G3DSA:3.40.50.300 18 357 2.5E-14 T 29-03-2018 Y880_RS20495 0ed0ee5e702838f652009009a6127f7e 364 SUPERFAMILY SSF52540 53 197 3.84E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22015 761722f48673bea701819a53d303d8f5 297 SUPERFAMILY SSF53807 27 286 9.03E-49 T 29-03-2018 Y880_RS22015 761722f48673bea701819a53d303d8f5 297 Pfam PF01497 Periplasmic binding protein 31 263 9.7E-31 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 Y880_RS22015 761722f48673bea701819a53d303d8f5 297 Gene3D G3DSA:3.40.50.1980 26 132 6.0E-26 T 29-03-2018 Y880_RS22015 761722f48673bea701819a53d303d8f5 297 Gene3D G3DSA:3.40.50.1980 133 293 2.1E-27 T 29-03-2018 Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 1 363 53.806 T 29-03-2018 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 Gene3D G3DSA:3.40.250.10 4 142 2.5E-14 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 Gene3D G3DSA:3.40.50.300 143 347 1.1E-4 T 29-03-2018 Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 SMART SM00450 2 133 7.9E-7 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 SUPERFAMILY SSF52821 92 156 2.7E-18 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 SUPERFAMILY SSF52821 10 64 2.7E-18 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 SUPERFAMILY SSF52540 145 283 9.16E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05260 b62df20cdb1e58e3d73818105713d546 369 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 15 348 5.8E-106 T 29-03-2018 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 56 252 3.3E-88 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 Pfam PF00813 FliP family 56 248 3.6E-79 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 229 241 - T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 181 196 - T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 226 251 2.1E-66 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 73 93 2.1E-66 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 93 112 2.1E-66 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 202 223 2.1E-66 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 54 73 2.1E-66 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 181 201 2.1E-66 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 152 164 4.3E-24 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 52 61 4.3E-24 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 124 138 4.3E-24 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 112 124 4.3E-24 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 242 252 4.3E-24 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y880_RS04200 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 174 186 4.3E-24 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 8.8E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 Gene3D G3DSA:1.10.10.10 7 82 7.9E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 SUPERFAMILY SSF46785 13 108 8.81E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 Pfam PF07729 FCD domain 90 216 7.0E-30 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 Gene3D G3DSA:1.20.120.530 83 238 7.3E-38 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 SMART SM00895 90 217 2.3E-26 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 SUPERFAMILY SSF48008 87 224 1.2E-28 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS00605 9118ca874e0d3f6b4ad49f812455bcfa 240 SMART SM00345 22 80 1.7E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS02005 1e18c914e6d02e944ca98c9ceb729fce 99 Pfam PF06611 Protein of unknown function (DUF1145) 4 59 4.8E-19 T 29-03-2018 IPR009525 Protein of unknown function DUF1145 Y880_RS21365 9f24c46a0f44d243223721a91179c484 334 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 237 330 1.3E-20 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS21365 9f24c46a0f44d243223721a91179c484 334 Gene3D G3DSA:3.30.1220.10 226 332 3.0E-24 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS21365 9f24c46a0f44d243223721a91179c484 334 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 13 191 4.4E-52 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y880_RS21365 9f24c46a0f44d243223721a91179c484 334 SUPERFAMILY SSF52540 11 210 1.99E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21365 9f24c46a0f44d243223721a91179c484 334 SMART SM00833 237 331 7.4E-16 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS21365 9f24c46a0f44d243223721a91179c484 334 SUPERFAMILY SSF90002 237 329 1.57E-25 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS21365 9f24c46a0f44d243223721a91179c484 334 Gene3D G3DSA:3.40.50.300 9 211 1.6E-41 T 29-03-2018 Y880_RS15470 fe7302cb7a818e1f5d3d617edb389d34 152 SUPERFAMILY SSF55811 9 132 9.21E-21 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS15470 fe7302cb7a818e1f5d3d617edb389d34 152 Pfam PF00293 NUDIX domain 10 119 1.7E-12 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS15470 fe7302cb7a818e1f5d3d617edb389d34 152 Gene3D G3DSA:3.90.79.10 7 151 7.4E-22 T 29-03-2018 Y880_RS15470 fe7302cb7a818e1f5d3d617edb389d34 152 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 SUPERFAMILY SSF46894 171 241 3.74E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 Pfam PF03472 Autoinducer binding domain 26 162 6.2E-36 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 235 2.2E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 SMART SM00421 178 235 8.9E-20 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 Gene3D G3DSA:1.10.10.10 180 241 9.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 Gene3D G3DSA:3.30.450.80 2 177 9.5E-40 T 29-03-2018 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 SUPERFAMILY SSF75516 9 172 3.79E-39 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 ProSitePatterns PS00622 LuxR-type HTH domain signature. 195 222 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 195 2.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 211 2.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS15510 420e996a0adeb596fc5d923200c7aaaa 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 211 223 2.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS14855 99f8c2891a41945fc19cbcf4f838babe 203 SUPERFAMILY SSF53448 16 199 1.13E-26 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS14855 99f8c2891a41945fc19cbcf4f838babe 203 Gene3D G3DSA:3.90.550.10 22 186 6.0E-14 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS14855 99f8c2891a41945fc19cbcf4f838babe 203 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 8 193 1.9E-40 T 29-03-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated Y880_RS14855 99f8c2891a41945fc19cbcf4f838babe 203 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 45 159 3.3E-29 T 29-03-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 SUPERFAMILY SSF50104 3 99 9.96E-34 T 29-03-2018 IPR008991 Translation protein SH3-like domain Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 100 4.0E-38 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 21.4 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 100 2.2E-25 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 SMART SM00739 3 30 1.2E-4 T 29-03-2018 IPR005824 KOW Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 29-03-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 Pfam PF00467 KOW motif 7 31 4.6E-6 T 29-03-2018 IPR005824 KOW Y880_RS19520 37595350c8aa8d61a6ff875d96ca0d9e 104 Gene3D G3DSA:2.30.30.30 2 92 1.5E-30 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 Y880_RS28030 c96f930fd7129c977e11b68f9b359d09 289 SUPERFAMILY SSF161098 23 274 2.09E-53 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28030 c96f930fd7129c977e11b68f9b359d09 289 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 22 279 4.7E-122 T 29-03-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 Y880_RS28030 c96f930fd7129c977e11b68f9b359d09 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 280 1.8E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28030 c96f930fd7129c977e11b68f9b359d09 289 Gene3D G3DSA:1.10.3720.10 22 285 2.4E-40 T 29-03-2018 Y880_RS28030 c96f930fd7129c977e11b68f9b359d09 289 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 25 276 4.5E-97 T 29-03-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 Y880_RS04480 f7728d0e85513bf5b30426271a64bab0 260 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 3.8E-34 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS04480 f7728d0e85513bf5b30426271a64bab0 260 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 255 5.1E-129 T 29-03-2018 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 Y880_RS04480 f7728d0e85513bf5b30426271a64bab0 260 Gene3D G3DSA:3.20.20.150 1 259 1.7E-59 T 29-03-2018 Y880_RS04480 f7728d0e85513bf5b30426271a64bab0 260 PIRSF PIRSF006241 1 260 2.2E-96 T 29-03-2018 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 Y880_RS04480 f7728d0e85513bf5b30426271a64bab0 260 SUPERFAMILY SSF51658 1 256 7.05E-88 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS05155 f838280137efbaf6ce302086531cdf15 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 1.6E-7 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS05155 f838280137efbaf6ce302086531cdf15 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 1.6E-7 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS05155 f838280137efbaf6ce302086531cdf15 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.6E-7 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS05155 f838280137efbaf6ce302086531cdf15 286 Pfam PF00561 alpha/beta hydrolase fold 28 137 6.6E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS05155 f838280137efbaf6ce302086531cdf15 286 SUPERFAMILY SSF53474 5 285 1.76E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05155 f838280137efbaf6ce302086531cdf15 286 Gene3D G3DSA:3.40.50.1820 2 280 3.2E-43 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS30025 89a293d9c9240aa1227f6e9246fb2872 116 Gene3D G3DSA:2.60.300.12 11 116 2.6E-39 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS30025 89a293d9c9240aa1227f6e9246fb2872 116 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 13 115 8.0E-38 T 29-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Y880_RS30025 89a293d9c9240aa1227f6e9246fb2872 116 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 116 36.764 T 29-03-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 Y880_RS30025 89a293d9c9240aa1227f6e9246fb2872 116 SUPERFAMILY SSF89360 5 102 1.22E-31 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS30025 89a293d9c9240aa1227f6e9246fb2872 116 Pfam PF01521 Iron-sulphur cluster biosynthesis 12 111 3.1E-19 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS30025 89a293d9c9240aa1227f6e9246fb2872 116 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 97 114 - T 29-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Y880_RS18845 bf9cc41f8b95d882173c66a3e3ad0537 267 Gene3D G3DSA:3.30.200.20 1 95 2.1E-20 T 29-03-2018 Y880_RS18845 bf9cc41f8b95d882173c66a3e3ad0537 267 PIRSF PIRSF000706 2 267 9.1E-98 T 29-03-2018 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 Y880_RS18845 bf9cc41f8b95d882173c66a3e3ad0537 267 Pfam PF01636 Phosphotransferase enzyme family 28 258 5.2E-35 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS18845 bf9cc41f8b95d882173c66a3e3ad0537 267 SUPERFAMILY SSF56112 13 266 2.62E-54 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS18845 bf9cc41f8b95d882173c66a3e3ad0537 267 Gene3D G3DSA:3.90.1200.10 103 267 7.3E-19 T 29-03-2018 Y880_RS04935 1a7e41dde6071936e374bb0ce79d4d65 202 Pfam PF01852 START domain 23 198 4.9E-15 T 29-03-2018 IPR002913 START domain GO:0008289 Y880_RS04935 1a7e41dde6071936e374bb0ce79d4d65 202 Gene3D G3DSA:3.30.530.20 22 202 1.7E-31 T 29-03-2018 IPR023393 START-like domain Y880_RS04935 1a7e41dde6071936e374bb0ce79d4d65 202 SUPERFAMILY SSF55961 22 201 5.5E-39 T 29-03-2018 Y880_RS04935 1a7e41dde6071936e374bb0ce79d4d65 202 PIRSF PIRSF039033 1 202 3.3E-82 T 29-03-2018 IPR028347 START domain-containing protein Y880_RS09015 88d885686d25da1479f87a4c39dc0db8 303 SUPERFAMILY SSF53850 92 298 5.07E-28 T 29-03-2018 Y880_RS09015 88d885686d25da1479f87a4c39dc0db8 303 Gene3D G3DSA:3.40.190.10 180 267 1.5E-8 T 29-03-2018 Y880_RS09015 88d885686d25da1479f87a4c39dc0db8 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.2E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09015 88d885686d25da1479f87a4c39dc0db8 303 Gene3D G3DSA:1.10.10.10 1 85 7.1E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09015 88d885686d25da1479f87a4c39dc0db8 303 SUPERFAMILY SSF46785 1 113 2.72E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09015 88d885686d25da1479f87a4c39dc0db8 303 Gene3D G3DSA:3.40.190.10 89 179 2.0E-17 T 29-03-2018 Y880_RS09015 88d885686d25da1479f87a4c39dc0db8 303 Pfam PF03466 LysR substrate binding domain 90 298 2.4E-28 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS08240 cf936e0932af1bf9ca98770904226574 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 2.6E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08240 cf936e0932af1bf9ca98770904226574 315 SUPERFAMILY SSF46785 13 123 1.47E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08240 cf936e0932af1bf9ca98770904226574 315 SUPERFAMILY SSF53850 104 312 1.21E-38 T 29-03-2018 Y880_RS08240 cf936e0932af1bf9ca98770904226574 315 Gene3D G3DSA:3.40.190.10 195 282 3.3E-17 T 29-03-2018 Y880_RS08240 cf936e0932af1bf9ca98770904226574 315 Gene3D G3DSA:1.10.10.10 9 96 8.6E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08240 cf936e0932af1bf9ca98770904226574 315 Gene3D G3DSA:3.40.190.10 103 194 1.0E-20 T 29-03-2018 Y880_RS08240 cf936e0932af1bf9ca98770904226574 315 Pfam PF03466 LysR substrate binding domain 103 308 2.3E-39 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 4.5E-15 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 SUPERFAMILY SSF63380 76 204 4.77E-23 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 Gene3D G3DSA:3.40.50.80 200 332 2.2E-29 T 29-03-2018 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 205 6.4E-25 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 230 6.4E-25 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 6.4E-25 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 6.4E-25 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 236 245 6.4E-25 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 300 308 6.4E-25 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 SUPERFAMILY SSF54292 1 98 1.97E-25 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 SUPERFAMILY SSF52343 204 333 3.67E-35 T 29-03-2018 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 Pfam PF00175 Oxidoreductase NAD-binding domain 212 314 1.9E-22 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 Pfam PF00970 Oxidoreductase FAD-binding domain 109 202 1.4E-16 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 Gene3D G3DSA:2.40.30.10 100 199 8.0E-23 T 29-03-2018 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 5.4E-8 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 236 245 5.4E-8 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 211 230 5.4E-8 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 300 308 5.4E-8 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS09930 50884b91d844c92511462fce25c5ec42 337 Gene3D G3DSA:3.10.20.30 1 99 1.8E-22 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS15900 d14b9b0b67d5e664be7b0568f26dd2cc 549 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 10 236 9.6E-30 T 29-03-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 Y880_RS15900 d14b9b0b67d5e664be7b0568f26dd2cc 549 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 1 547 41.301 T 29-03-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 Y880_RS22190 31be409f61215d3456c3847c96991c27 89 Pfam PF00312 Ribosomal protein S15 8 88 5.5E-36 T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS22190 31be409f61215d3456c3847c96991c27 89 SUPERFAMILY SSF47060 3 89 2.68E-34 T 29-03-2018 IPR009068 S15/NS1, RNA-binding Y880_RS22190 31be409f61215d3456c3847c96991c27 89 SMART SM01387 8 88 5.2E-50 T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS22190 31be409f61215d3456c3847c96991c27 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS22190 31be409f61215d3456c3847c96991c27 89 Gene3D G3DSA:1.10.287.10 2 89 2.4E-34 T 29-03-2018 Y880_RS22190 31be409f61215d3456c3847c96991c27 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 8.0E-40 T 29-03-2018 Y880_RS22190 31be409f61215d3456c3847c96991c27 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 20.97 T 29-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS22190 31be409f61215d3456c3847c96991c27 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 1.2E-37 T 29-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS24585 76b6eb5280add0950e381fc6160ab8df 301 Gene3D G3DSA:3.30.470.20 171 277 6.5E-34 T 29-03-2018 Y880_RS24585 76b6eb5280add0950e381fc6160ab8df 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 285 8.0E-87 T 29-03-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 Y880_RS24585 76b6eb5280add0950e381fc6160ab8df 301 Gene3D G3DSA:3.40.50.20 1 114 7.3E-37 T 29-03-2018 Y880_RS24585 76b6eb5280add0950e381fc6160ab8df 301 Pfam PF08443 RimK-like ATP-grasp domain 98 286 9.9E-69 T 29-03-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y880_RS24585 76b6eb5280add0950e381fc6160ab8df 301 SUPERFAMILY SSF56059 98 288 9.43E-50 T 29-03-2018 Y880_RS24585 76b6eb5280add0950e381fc6160ab8df 301 Gene3D G3DSA:3.30.1490.20 115 170 1.4E-11 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS24585 76b6eb5280add0950e381fc6160ab8df 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 55.391 T 29-03-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Y880_RS04275 15704a0f5adf481eb987eb14fe23d700 296 SUPERFAMILY SSF103088 127 240 1.7E-30 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS04275 15704a0f5adf481eb987eb14fe23d700 296 Gene3D G3DSA:3.30.1330.60 71 266 6.4E-37 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS04275 15704a0f5adf481eb987eb14fe23d700 296 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 57 7.2E-22 T 29-03-2018 IPR025713 Motility protein B, N-terminal domain Y880_RS04275 15704a0f5adf481eb987eb14fe23d700 296 Pfam PF00691 OmpA family 145 234 2.8E-17 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 1.0E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 197 110.036 T 29-03-2018 IPR017757 Transcriptional repressor BetI Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 SUPERFAMILY SSF46689 5 79 1.08E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 Gene3D G3DSA:1.10.260.40 45 67 1.4E-7 T 29-03-2018 Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 Gene3D G3DSA:1.10.357.10 68 197 4.3E-17 T 29-03-2018 Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 SUPERFAMILY SSF48498 81 193 1.62E-23 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 84 193 1.1E-34 T 29-03-2018 Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 192 4.6E-77 T 29-03-2018 IPR017757 Transcriptional repressor BetI Y880_RS25515 04696eb2a4513a73e697adac22a62767 197 Gene3D G3DSA:1.10.10.60 6 44 1.8E-10 T 29-03-2018 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 Gene3D G3DSA:3.40.50.720 267 564 2.3E-104 T 29-03-2018 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 SUPERFAMILY SSF51735 269 561 1.0E-92 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 2 564 70.344 T 29-03-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 Gene3D G3DSA:3.40.50.10380 13 266 3.8E-112 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 SUPERFAMILY SSF53223 5 268 7.19E-107 T 29-03-2018 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 Pfam PF03949 Malic enzyme, NAD binding domain 269 529 6.2E-104 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 ProSitePatterns PS00331 Malic enzymes signature. 265 281 - T 29-03-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 145 174 2.9E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 181 203 2.9E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 85 109 2.9E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 265 281 2.9E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 296 312 2.9E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 240 258 2.9E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 407 423 2.9E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 SMART SM01274 79 259 9.1E-105 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 Pfam PF00390 Malic enzyme, N-terminal domain 79 259 3.5E-77 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 PIRSF PIRSF000106 1 562 3.1E-220 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y880_RS15475 5faad901b3a7afe63e72166f9d548a5f 564 SMART SM00919 269 530 6.2E-129 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y880_RS23460 c9a003384b6cdf258eb379dcef3ea77a 363 SUPERFAMILY SSF53850 44 360 3.78E-59 T 29-03-2018 Y880_RS23460 c9a003384b6cdf258eb379dcef3ea77a 363 Gene3D G3DSA:3.40.190.10 161 316 5.2E-28 T 29-03-2018 Y880_RS23460 c9a003384b6cdf258eb379dcef3ea77a 363 Gene3D G3DSA:3.40.190.10 41 160 9.4E-11 T 29-03-2018 Y880_RS23460 c9a003384b6cdf258eb379dcef3ea77a 363 Pfam PF13416 Bacterial extracellular solute-binding protein 63 327 5.9E-40 T 29-03-2018 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 2.5E-11 T 29-03-2018 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.5E-11 T 29-03-2018 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 2.5E-11 T 29-03-2018 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 2.5E-11 T 29-03-2018 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 SUPERFAMILY SSF51905 4 178 6.83E-49 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 SUPERFAMILY SSF51905 268 383 6.83E-49 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 388 1.5E-123 T 29-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 Gene3D G3DSA:3.50.50.60 1 362 1.0E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 5 388 1.6E-149 T 29-03-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 Y880_RS24715 792eccc48964f0a1fe849d907752ebc1 394 Pfam PF01494 FAD binding domain 4 317 4.2E-17 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 10 195 6.8E-73 T 29-03-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 Gene3D G3DSA:3.30.70.1530 26 93 2.6E-20 T 29-03-2018 Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 Pfam PF01514 Secretory protein of YscJ/FliF family 12 190 1.9E-26 T 29-03-2018 IPR006182 Secretory protein YscJ/FliF Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 80 93 6.8E-30 T 29-03-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 28 38 6.8E-30 T 29-03-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 169 181 6.8E-30 T 29-03-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 120 133 6.8E-30 T 29-03-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y880_RS05685 a2ade60169376aa3c37cff6bf16b1f2d 248 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 100 115 6.8E-30 T 29-03-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 10 586 2.4E-186 T 29-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF01541 GIY-YIG catalytic domain 19 93 1.1E-9 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF02151 UvrB/uvrC motif 214 234 6.7E-6 T 29-03-2018 IPR001943 UVR domain GO:0005515 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 SMART SM00465 17 98 1.4E-22 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 SMART SM00278 585 604 0.59 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 SMART SM00278 553 572 0.61 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 SUPERFAMILY SSF46600 190 243 3.27E-11 T 29-03-2018 IPR001943 UVR domain GO:0005515 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 SUPERFAMILY SSF47781 518 606 3.15E-24 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF14520 Helix-hairpin-helix domain 554 603 3.3E-12 T 29-03-2018 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Gene3D G3DSA:1.10.150.20 551 608 3.9E-16 T 29-03-2018 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 604 29.748 T 29-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Gene3D G3DSA:4.10.860.10 182 242 6.9E-13 T 29-03-2018 IPR001943 UVR domain GO:0005515 Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Gene3D G3DSA:3.40.1440.10 6 101 1.4E-21 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 384 539 9.1E-53 T 29-03-2018 IPR001162 UvrC family homology region Y880_RS10330 e7ca09d4c346cbfa9531effcbf956395 608 SUPERFAMILY SSF82771 16 100 1.83E-21 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily Y880_RS20440 782f88f8389411e71ec36512086af93c 135 PIRSF PIRSF005276 1 135 2.8E-55 T 29-03-2018 IPR007481 Stringent starvation protein B Y880_RS20440 782f88f8389411e71ec36512086af93c 135 Pfam PF04386 Stringent starvation protein B 4 135 4.1E-35 T 29-03-2018 IPR007481 Stringent starvation protein B Y880_RS20440 782f88f8389411e71ec36512086af93c 135 SUPERFAMILY SSF101738 1 114 1.31E-47 T 29-03-2018 IPR007481 Stringent starvation protein B Y880_RS20440 782f88f8389411e71ec36512086af93c 135 Gene3D G3DSA:2.30.30.220 5 102 1.0E-39 T 29-03-2018 IPR007481 Stringent starvation protein B Y880_RS29425 bcced861ae09053737a94c99164276d4 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 297 306 3.0E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 399 407 3.0E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 238 250 3.0E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 313 332 3.0E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 Pfam PF08022 FAD-binding domain 221 300 6.3E-8 T 29-03-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 Pfam PF01794 Ferric reductase like transmembrane component 40 165 2.0E-19 T 29-03-2018 IPR013130 Ferric reductase transmembrane component-like domain Y880_RS29425 bcced861ae09053737a94c99164276d4 434 Pfam PF00175 Oxidoreductase NAD-binding domain 315 411 2.2E-6 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 SUPERFAMILY SSF63380 211 302 7.7E-19 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 Gene3D G3DSA:3.40.50.80 308 434 1.1E-23 T 29-03-2018 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 SUPERFAMILY SSF52343 305 431 2.62E-24 T 29-03-2018 Y880_RS29425 bcced861ae09053737a94c99164276d4 434 Gene3D G3DSA:2.40.30.10 204 301 2.5E-16 T 29-03-2018 Y880_RS12890 2e2d8ec879b03f579386b28d111cacbf 254 Pfam PF02348 Cytidylyltransferase 7 226 9.5E-56 T 29-03-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Y880_RS12890 2e2d8ec879b03f579386b28d111cacbf 254 SUPERFAMILY SSF53448 5 251 1.41E-60 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS12890 2e2d8ec879b03f579386b28d111cacbf 254 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 246 2.6E-93 T 29-03-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Y880_RS12890 2e2d8ec879b03f579386b28d111cacbf 254 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 3 253 44.077 T 29-03-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Y880_RS12890 2e2d8ec879b03f579386b28d111cacbf 254 Gene3D G3DSA:3.90.550.10 1 253 3.0E-46 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02635 ec7159478e74d59ec362a0e273373460 90 Gene3D G3DSA:1.20.120.650 4 87 1.4E-15 T 29-03-2018 Y880_RS02635 ec7159478e74d59ec362a0e273373460 90 Pfam PF09204 Bacterial self-protective colicin-like immunity 1 85 3.9E-14 T 29-03-2018 IPR015287 Colicin D immunity protein domain GO:0015643|GO:0030153 Y880_RS02635 ec7159478e74d59ec362a0e273373460 90 SUPERFAMILY SSF101125 2 88 1.2E-7 T 29-03-2018 IPR015287 Colicin D immunity protein domain GO:0015643|GO:0030153 Y880_RS08050 69b003e1dacdd537d9a19b8ef32bbca2 513 Pfam PF00534 Glycosyl transferases group 1 320 463 6.2E-15 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS08050 69b003e1dacdd537d9a19b8ef32bbca2 513 Gene3D G3DSA:3.40.50.2000 281 482 1.2E-34 T 29-03-2018 Y880_RS08050 69b003e1dacdd537d9a19b8ef32bbca2 513 Hamap MF_00484 Glycogen synthase [glgA]. 33 500 41.039 T 29-03-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Y880_RS08050 69b003e1dacdd537d9a19b8ef32bbca2 513 Pfam PF08323 Starch synthase catalytic domain 34 268 2.1E-65 T 29-03-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Y880_RS08050 69b003e1dacdd537d9a19b8ef32bbca2 513 Gene3D G3DSA:3.40.50.2000 31 280 4.6E-5 T 29-03-2018 Y880_RS08050 69b003e1dacdd537d9a19b8ef32bbca2 513 SUPERFAMILY SSF53756 34 503 1.74E-105 T 29-03-2018 Y880_RS08050 69b003e1dacdd537d9a19b8ef32bbca2 513 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 34 500 5.2E-160 T 29-03-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Y880_RS03725 837f832c47a46f1f3747d1aaf11c0534 246 Gene3D G3DSA:1.10.1740.10 81 147 2.1E-8 T 29-03-2018 Y880_RS03725 837f832c47a46f1f3747d1aaf11c0534 246 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 85 239 8.2E-20 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03725 837f832c47a46f1f3747d1aaf11c0534 246 Gene3D G3DSA:1.10.10.10 148 242 1.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03725 837f832c47a46f1f3747d1aaf11c0534 246 Pfam PF08281 Sigma-70, region 4 183 235 1.7E-14 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03725 837f832c47a46f1f3747d1aaf11c0534 246 SUPERFAMILY SSF88659 177 240 6.76E-14 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03725 837f832c47a46f1f3747d1aaf11c0534 246 SUPERFAMILY SSF88946 86 164 3.06E-6 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 SMART SM00382 199 347 5.2E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 SMART SM00382 539 713 4.7E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 573 591 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Pfam PF07724 AAA domain (Cdc48 subfamily) 538 706 4.6E-54 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Gene3D G3DSA:1.10.1780.10 82 191 4.5E-24 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Gene3D G3DSA:1.10.1780.10 3 81 3.0E-12 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Gene3D G3DSA:1.10.8.60 712 817 1.6E-20 T 29-03-2018 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Gene3D G3DSA:3.40.50.300 192 344 4.0E-20 T 29-03-2018 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 SUPERFAMILY SSF52540 488 799 1.32E-78 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 65 9.5E-8 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 144 4.7E-15 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 712 791 6.5E-22 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 SUPERFAMILY SSF81923 5 146 4.61E-27 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 SUPERFAMILY SSF52540 160 471 1.14E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Gene3D G3DSA:1.10.8.60 346 489 1.4E-42 T 29-03-2018 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 337 1.1E-15 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 Gene3D G3DSA:3.40.50.300 494 711 4.7E-51 T 29-03-2018 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 617 635 4.5E-40 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 588 606 4.5E-40 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 543 561 4.5E-40 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 664 4.5E-40 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 Y880_RS28975 9ac8d9e445067fbc35a2c1949a14e70b 850 SMART SM01086 712 802 1.7E-24 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS24610 fecfd159afe09260cc85e26e548bc568 129 Pfam PF03061 Thioesterase superfamily 44 119 2.6E-21 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS24610 fecfd159afe09260cc85e26e548bc568 129 SUPERFAMILY SSF54637 10 128 1.39E-35 T 29-03-2018 IPR029069 HotDog domain Y880_RS24610 fecfd159afe09260cc85e26e548bc568 129 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 126 4.1E-23 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS24610 fecfd159afe09260cc85e26e548bc568 129 Gene3D G3DSA:3.10.129.10 4 127 5.5E-32 T 29-03-2018 Y880_RS16885 6fe16d27711c6026fc134ccce6e6487b 83 SUPERFAMILY SSF54565 1 78 1.22E-28 T 29-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16885 6fe16d27711c6026fc134ccce6e6487b 83 Pfam PF00886 Ribosomal protein S16 8 68 1.2E-24 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16885 6fe16d27711c6026fc134ccce6e6487b 83 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.896 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16885 6fe16d27711c6026fc134ccce6e6487b 83 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 3.7E-28 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16885 6fe16d27711c6026fc134ccce6e6487b 83 Gene3D G3DSA:3.30.1320.10 1 79 2.3E-32 T 29-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 59.139 T 29-03-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 Pfam PF00171 Aldehyde dehydrogenase family 16 479 6.2E-181 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 SUPERFAMILY SSF53720 5 483 3.53E-177 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 9.4E-228 T 29-03-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 Gene3D G3DSA:3.40.605.10 1 267 4.6E-111 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS25510 76288aae7cb1b7097ac4af2775f91af8 490 Gene3D G3DSA:3.40.309.10 268 465 1.5E-73 T 29-03-2018 Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 PIRSF PIRSF001589 1 648 4.3E-160 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 581 1.1E-141 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 SUPERFAMILY SSF56235 1 218 9.44E-62 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 Gene3D G3DSA:3.60.20.10 1 229 3.7E-52 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 Gene3D G3DSA:3.40.50.620 230 648 1.0E-82 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 SUPERFAMILY SSF52402 241 394 7.85E-95 T 29-03-2018 Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 SUPERFAMILY SSF52402 501 641 7.85E-95 T 29-03-2018 Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 Pfam PF00733 Asparagine synthase 254 646 4.1E-116 T 29-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y880_RS23515 a6556769f54c3a6e0bbb8183413c1dd7 648 Pfam PF13537 Glutamine amidotransferase domain 50 168 3.1E-40 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain Y880_RS19180 03bb98a33941bb028c300f01d8c6e754 239 SMART SM00873 64 216 1.7E-15 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y880_RS19180 03bb98a33941bb028c300f01d8c6e754 239 Gene3D G3DSA:3.50.40.10 60 207 5.2E-21 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Y880_RS19180 03bb98a33941bb028c300f01d8c6e754 239 Pfam PF03483 B3/4 domain 66 195 2.1E-16 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y880_RS19180 03bb98a33941bb028c300f01d8c6e754 239 SUPERFAMILY SSF56037 54 213 1.41E-26 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Y880_RS03060 d57f8a22e8a50e69a318b085a8d0352e 167 Gene3D G3DSA:3.40.30.10 1 167 3.3E-7 T 29-03-2018 Y880_RS03060 d57f8a22e8a50e69a318b085a8d0352e 167 SUPERFAMILY SSF52833 8 163 9.97E-10 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS03060 d57f8a22e8a50e69a318b085a8d0352e 167 Pfam PF14595 Thioredoxin 39 135 2.0E-22 T 29-03-2018 Y880_RS16650 bb19245ca51bb7f53ccbd3a9a6fc0d3f 237 SUPERFAMILY SSF46689 32 103 1.44E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS16650 bb19245ca51bb7f53ccbd3a9a6fc0d3f 237 Gene3D G3DSA:1.10.357.10 35 237 4.0E-35 T 29-03-2018 Y880_RS16650 bb19245ca51bb7f53ccbd3a9a6fc0d3f 237 Pfam PF00440 Bacterial regulatory proteins, tetR family 40 83 2.0E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 Gene3D G3DSA:3.40.50.2300 55 174 7.3E-40 T 29-03-2018 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.4E-16 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 SUPERFAMILY SSF53822 61 333 7.4E-90 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 SUPERFAMILY SSF47413 1 59 2.38E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 Pfam PF13377 Periplasmic binding protein-like domain 168 330 1.2E-41 T 29-03-2018 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 Gene3D G3DSA:1.10.260.40 2 54 2.4E-19 T 29-03-2018 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 SMART SM00354 1 71 7.6E-32 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.9E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.9E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 Y880_RS06900 40f1b641b669af4b58987739a7fe62d7 337 Gene3D G3DSA:3.40.50.2300 175 313 1.0E-44 T 29-03-2018 Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 Pfam PF08544 GHMP kinases C terminal 203 254 5.4E-5 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 Pfam PF00288 GHMP kinases N terminal domain 87 144 1.3E-10 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 SUPERFAMILY SSF55060 160 277 2.73E-33 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4 278 6.9E-84 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 PIRSF PIRSF010376 3 279 5.5E-87 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 5 271 33.125 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 Gene3D G3DSA:3.30.70.890 162 279 1.8E-21 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 Gene3D G3DSA:3.30.230.10 5 160 3.6E-47 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS21715 57e2b74a83b17d19df98d433dd35f4cd 282 SUPERFAMILY SSF54211 7 158 1.97E-47 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 126 1.5E-39 T 29-03-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 SUPERFAMILY SSF55347 128 237 1.79E-37 T 29-03-2018 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 Gene3D G3DSA:3.40.50.720 2 121 1.6E-27 T 29-03-2018 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 3 266 1.4E-100 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 PIRSF PIRSF000161 1 268 1.9E-88 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 266 36.014 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 SUPERFAMILY SSF51735 1 127 3.23E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 SUPERFAMILY SSF51735 237 267 3.23E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 129 265 6.9E-44 T 29-03-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 151 168 - T 29-03-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y880_RS22290 f92f02fcc6aba2eb9c5ed8694addf071 268 Gene3D G3DSA:3.30.360.10 127 235 2.4E-36 T 29-03-2018 Y880_RS26025 02224a325375dafaf267087acedfb847 204 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 115 131 - T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y880_RS26025 02224a325375dafaf267087acedfb847 204 TIGRFAM TIGR03072 release_prfH: putative peptide chain release factor H 2 201 3.5E-97 T 29-03-2018 IPR017509 Putative peptide chain release factor H Y880_RS26025 02224a325375dafaf267087acedfb847 204 SUPERFAMILY SSF75620 3 196 5.23E-43 T 29-03-2018 Y880_RS26025 02224a325375dafaf267087acedfb847 204 Pfam PF00472 RF-1 domain 107 191 1.3E-22 T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y880_RS26025 02224a325375dafaf267087acedfb847 204 Gene3D G3DSA:3.30.160.20 102 182 2.2E-23 T 29-03-2018 Y880_RS12325 c0c672958b9ccf28e91fa3723fcfca0c 265 SUPERFAMILY SSF54637 1 108 1.23E-25 T 29-03-2018 IPR029069 HotDog domain Y880_RS12325 c0c672958b9ccf28e91fa3723fcfca0c 265 Pfam PF13622 Thioesterase-like superfamily 20 263 3.1E-52 T 29-03-2018 Y880_RS12325 c0c672958b9ccf28e91fa3723fcfca0c 265 Gene3D G3DSA:3.10.129.10 136 263 1.3E-15 T 29-03-2018 Y880_RS12325 c0c672958b9ccf28e91fa3723fcfca0c 265 SUPERFAMILY SSF54637 123 263 2.4E-27 T 29-03-2018 IPR029069 HotDog domain Y880_RS12325 c0c672958b9ccf28e91fa3723fcfca0c 265 Gene3D G3DSA:3.10.129.10 1 110 1.0E-21 T 29-03-2018 Y880_RS05660 8d4e3f7b5ba9b4dbaca47e9c350b3d91 67 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 2 67 2.6E-23 T 29-03-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 Y880_RS05660 8d4e3f7b5ba9b4dbaca47e9c350b3d91 67 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 2 67 3.0E-20 T 29-03-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 Y880_RS16295 e843327d16de10b1e8dddfe84326d54e 283 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 280 7.3E-127 T 29-03-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 Y880_RS16295 e843327d16de10b1e8dddfe84326d54e 283 Gene3D G3DSA:3.40.50.1820 1 281 8.0E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS16295 e843327d16de10b1e8dddfe84326d54e 283 SUPERFAMILY SSF53474 5 282 8.9E-94 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS16295 e843327d16de10b1e8dddfe84326d54e 283 Pfam PF00756 Putative esterase 25 275 4.8E-63 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 Y880_RS20100 72790afe87bf0c47808a2451c6be2328 352 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 6 123 3.1E-11 T 29-03-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 Y880_RS20100 72790afe87bf0c47808a2451c6be2328 352 Gene3D G3DSA:3.40.50.720 4 156 4.0E-21 T 29-03-2018 Y880_RS20100 72790afe87bf0c47808a2451c6be2328 352 SUPERFAMILY SSF51735 4 136 1.22E-16 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 PIRSF PIRSF038994 3 363 1.7E-96 T 29-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 Gene3D G3DSA:3.20.20.140 60 334 3.5E-89 T 29-03-2018 Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 SUPERFAMILY SSF51338 334 362 1.03E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 SUPERFAMILY SSF51338 3 44 1.03E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 SUPERFAMILY SSF51556 45 332 2.13E-82 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 40 360 1.4E-71 T 29-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 Pfam PF01979 Amidohydrolase family 41 361 6.2E-12 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS16955 6e0b10264c4bd214597de5684e742503 363 Gene3D G3DSA:2.30.40.10 2 59 7.2E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS11200 86c16257453cb7f1c98f45481c39796e 95 Pfam PF12021 Protein of unknown function (DUF3509) 4 87 1.8E-32 T 29-03-2018 IPR021898 Protein of unknown function DUF3509 Y880_RS17325 755d8f0319301b2c1c8e1ee578742721 347 SUPERFAMILY SSF111337 1 336 7.32E-138 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y880_RS17325 755d8f0319301b2c1c8e1ee578742721 347 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 337 5.7E-149 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y880_RS17325 755d8f0319301b2c1c8e1ee578742721 347 Gene3D G3DSA:3.40.1780.10 1 123 6.1E-33 T 29-03-2018 Y880_RS17325 755d8f0319301b2c1c8e1ee578742721 347 Gene3D G3DSA:3.40.1780.10 171 337 4.8E-66 T 29-03-2018 Y880_RS17325 755d8f0319301b2c1c8e1ee578742721 347 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 337 47.998 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y880_RS17325 755d8f0319301b2c1c8e1ee578742721 347 Pfam PF02547 Queuosine biosynthesis protein 4 336 4.1E-135 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y880_RS06555 164701c37ea6952ef8a6ee31559e9080 153 SUPERFAMILY SSF47741 73 151 4.06E-30 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS06555 164701c37ea6952ef8a6ee31559e9080 153 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS06555 164701c37ea6952ef8a6ee31559e9080 153 SUPERFAMILY SSF54292 2 78 7.73E-26 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS06555 164701c37ea6952ef8a6ee31559e9080 153 Pfam PF01799 [2Fe-2S] binding domain 73 144 3.7E-25 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS06555 164701c37ea6952ef8a6ee31559e9080 153 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 59 8.2E-9 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS06555 164701c37ea6952ef8a6ee31559e9080 153 Gene3D G3DSA:1.10.150.120 75 153 1.5E-27 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS06555 164701c37ea6952ef8a6ee31559e9080 153 Gene3D G3DSA:3.10.20.30 2 74 4.0E-27 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS04535 24562efa06ad24df1dfdaf8122c9c57a 422 Pfam PF06181 Urate oxidase N-terminal 4 294 2.0E-128 T 29-03-2018 IPR010389 Urate oxidase N-terminal Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF116726 361 436 1.83E-9 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02080 TrkA-C domain 389 450 1.6E-12 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02080 TrkA-C domain 156 221 2.6E-12 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02254 TrkA-N domain 3 105 1.4E-26 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02254 TrkA-N domain 234 349 2.6E-23 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.30.70.1450 140 229 2.0E-17 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.40.50.720 230 348 1.1E-20 T 29-03-2018 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF51735 1 150 9.86E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF116726 135 221 1.15E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.7E-30 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.7E-30 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.7E-30 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.7E-30 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.7E-30 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.30.70.1450 366 457 2.6E-19 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF51735 231 375 1.84E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26665 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.40.50.720 1 139 6.0E-26 T 29-03-2018 Y880_RS14420 0ec8373baf9bb690b26aef2fb6b9b234 109 SUPERFAMILY SSF103481 6 106 1.16E-7 T 29-03-2018 Y880_RS14420 0ec8373baf9bb690b26aef2fb6b9b234 109 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 3 106 1.4E-27 T 29-03-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Y880_RS14420 0ec8373baf9bb690b26aef2fb6b9b234 109 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 1 106 22.672 T 29-03-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Y880_RS07195 f38797dfd75ec98d7e140bfee318c0ed 432 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 125 423 7.7E-58 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS07195 f38797dfd75ec98d7e140bfee318c0ed 432 SUPERFAMILY SSF63433 8 119 1.09E-29 T 29-03-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y880_RS07195 f38797dfd75ec98d7e140bfee318c0ed 432 Gene3D G3DSA:2.30.30.230 9 117 2.0E-27 T 29-03-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y880_RS07195 f38797dfd75ec98d7e140bfee318c0ed 432 Pfam PF09298 Fumarylacetoacetase N-terminal 23 119 7.6E-23 T 29-03-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y880_RS07195 f38797dfd75ec98d7e140bfee318c0ed 432 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 9 427 6.6E-210 T 29-03-2018 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y880_RS07195 f38797dfd75ec98d7e140bfee318c0ed 432 SUPERFAMILY SSF56529 121 425 2.22E-94 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS07195 f38797dfd75ec98d7e140bfee318c0ed 432 Gene3D G3DSA:3.90.850.10 118 411 7.9E-85 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS09680 058532d992decb69e6d57210e8c726c7 172 SUPERFAMILY SSF88946 11 102 3.77E-16 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09680 058532d992decb69e6d57210e8c726c7 172 Pfam PF08281 Sigma-70, region 4 113 165 4.1E-14 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09680 058532d992decb69e6d57210e8c726c7 172 Gene3D G3DSA:1.10.1740.10 6 86 8.2E-18 T 29-03-2018 Y880_RS09680 058532d992decb69e6d57210e8c726c7 172 Pfam PF04542 Sigma-70 region 2 17 81 7.9E-15 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09680 058532d992decb69e6d57210e8c726c7 172 Gene3D G3DSA:1.10.10.10 89 165 1.1E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09680 058532d992decb69e6d57210e8c726c7 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 162 1.0E-20 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09680 058532d992decb69e6d57210e8c726c7 172 SUPERFAMILY SSF88659 91 165 3.36E-13 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS26265 b8b0a8d3ac00890935303190d1d4eda9 290 Pfam PF08543 Phosphomethylpyrimidine kinase 77 262 1.8E-12 T 29-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Y880_RS26265 b8b0a8d3ac00890935303190d1d4eda9 290 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 6 287 9.5E-112 T 29-03-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Y880_RS26265 b8b0a8d3ac00890935303190d1d4eda9 290 Gene3D G3DSA:3.40.1190.20 1 288 3.9E-64 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS26265 b8b0a8d3ac00890935303190d1d4eda9 290 SUPERFAMILY SSF53613 4 281 9.51E-71 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS26265 b8b0a8d3ac00890935303190d1d4eda9 290 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 4 288 53.926 T 29-03-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 Y880_RS16720 aa5036da44cb9e0cfd788b0cc87401e8 620 Pfam PF13450 NAD(P)-binding Rossmann-like domain 78 137 8.8E-13 T 29-03-2018 Y880_RS16720 aa5036da44cb9e0cfd788b0cc87401e8 620 Gene3D G3DSA:3.50.50.60 70 620 2.5E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS16720 aa5036da44cb9e0cfd788b0cc87401e8 620 SUPERFAMILY SSF51905 68 160 7.69E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS16720 aa5036da44cb9e0cfd788b0cc87401e8 620 SUPERFAMILY SSF51905 350 441 7.69E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Gene3D G3DSA:3.40.50.980 219 379 7.8E-41 T 29-03-2018 Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 478 552 6.0E-19 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Gene3D G3DSA:2.30.38.10 380 462 7.5E-30 T 29-03-2018 Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Pfam PF00501 AMP-binding enzyme 30 469 6.0E-108 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 SUPERFAMILY SSF56801 21 561 4.19E-151 T 29-03-2018 Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Gene3D G3DSA:3.40.50.980 21 218 3.4E-38 T 29-03-2018 Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Gene3D G3DSA:3.30.300.30 463 562 2.6E-29 T 29-03-2018 Y880_RS14560 57bb7a8daf4da088d12e7b1d1aa64cbc 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 29-03-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-70153 Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 Gene3D G3DSA:1.20.1250.20 240 447 1.8E-31 T 29-03-2018 Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 Gene3D G3DSA:1.20.1250.20 18 221 2.2E-35 T 29-03-2018 Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 SUPERFAMILY SSF103473 10 439 5.23E-87 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 1.3E-154 T 29-03-2018 Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 435 2.2E-240 T 29-03-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 Pfam PF07690 Major Facilitator Superfamily 34 400 3.5E-53 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS24780 ed0df46f65c29c28ccd7645bd689e510 448 PIRSF PIRSF002808 5 447 3.2E-174 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 Y880_RS20000 393c14a3f25d2adccdd9244b4e93e36b 439 SUPERFAMILY SSF103473 11 419 1.05E-65 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS20000 393c14a3f25d2adccdd9244b4e93e36b 439 Gene3D G3DSA:1.20.1250.20 234 431 2.1E-24 T 29-03-2018 Y880_RS20000 393c14a3f25d2adccdd9244b4e93e36b 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS20000 393c14a3f25d2adccdd9244b4e93e36b 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 292 309 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS20000 393c14a3f25d2adccdd9244b4e93e36b 439 Pfam PF07690 Major Facilitator Superfamily 245 430 2.5E-11 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS20000 393c14a3f25d2adccdd9244b4e93e36b 439 Gene3D G3DSA:1.20.1250.20 8 225 2.9E-22 T 29-03-2018 Y880_RS20000 393c14a3f25d2adccdd9244b4e93e36b 439 Pfam PF00083 Sugar (and other) transporter 16 211 2.3E-20 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS23540 a7a92bc295e2dbf0f31ee4e9fea3f572 294 SUPERFAMILY SSF53448 8 225 8.72E-56 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS23540 a7a92bc295e2dbf0f31ee4e9fea3f572 294 Gene3D G3DSA:3.90.550.10 3 270 2.3E-51 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS23540 a7a92bc295e2dbf0f31ee4e9fea3f572 294 Pfam PF00535 Glycosyl transferase family 2 13 180 1.5E-29 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS22050 16a2f293987aa8ba91438f27db7a9f8d 411 Gene3D G3DSA:3.90.1150.10 13 259 4.3E-42 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS22050 16a2f293987aa8ba91438f27db7a9f8d 411 Pfam PF00155 Aminotransferase class I and II 37 386 4.9E-59 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS22050 16a2f293987aa8ba91438f27db7a9f8d 411 Gene3D G3DSA:3.90.1150.10 260 397 2.5E-37 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS22050 16a2f293987aa8ba91438f27db7a9f8d 411 SUPERFAMILY SSF53383 10 394 1.88E-106 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 SUPERFAMILY SSF51735 5 258 3.29E-61 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 176 0.0092 T 29-03-2018 Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 Pfam PF00106 short chain dehydrogenase 5 190 1.9E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 Gene3D G3DSA:3.40.50.720 2 267 7.8E-56 T 29-03-2018 Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.8E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.8E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.8E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.8E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14430 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.8E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS21115 f824c43af10d92bff21fa0a0d160271b 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 6.0E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21115 f824c43af10d92bff21fa0a0d160271b 141 SUPERFAMILY SSF54523 8 126 5.76E-23 T 29-03-2018 Y880_RS21115 f824c43af10d92bff21fa0a0d160271b 141 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 117 1.5E-25 T 29-03-2018 IPR031982 Type IV minor pilin ComP Y880_RS21115 f824c43af10d92bff21fa0a0d160271b 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21115 f824c43af10d92bff21fa0a0d160271b 141 Gene3D G3DSA:3.30.700.10 8 139 4.3E-23 T 29-03-2018 Y880_RS21115 f824c43af10d92bff21fa0a0d160271b 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 27 3.7E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS20550 4cb399af2ea13d89b839dbb2b812cb0c 211 Gene3D G3DSA:3.40.190.10 115 207 9.5E-18 T 29-03-2018 Y880_RS20550 4cb399af2ea13d89b839dbb2b812cb0c 211 SUPERFAMILY SSF53850 1 206 1.87E-63 T 29-03-2018 Y880_RS20550 4cb399af2ea13d89b839dbb2b812cb0c 211 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 206 56.773 T 29-03-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 Y880_RS20550 4cb399af2ea13d89b839dbb2b812cb0c 211 Pfam PF01634 ATP phosphoribosyltransferase 51 202 1.5E-45 T 29-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Y880_RS20550 4cb399af2ea13d89b839dbb2b812cb0c 211 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 141 162 - T 29-03-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 Y880_RS20550 4cb399af2ea13d89b839dbb2b812cb0c 211 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 182 6.1E-53 T 29-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Y880_RS20550 4cb399af2ea13d89b839dbb2b812cb0c 211 Gene3D G3DSA:3.40.190.10 1 114 2.5E-35 T 29-03-2018 Y880_RS27680 d640baeb49a7899f8e4698e760c1d86e 309 SUPERFAMILY SSF53850 97 297 5.43E-28 T 29-03-2018 Y880_RS27680 d640baeb49a7899f8e4698e760c1d86e 309 Pfam PF03466 LysR substrate binding domain 96 297 3.0E-35 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27680 d640baeb49a7899f8e4698e760c1d86e 309 Gene3D G3DSA:3.40.190.10 94 184 3.2E-11 T 29-03-2018 Y880_RS27680 d640baeb49a7899f8e4698e760c1d86e 309 SUPERFAMILY SSF46785 7 85 5.8E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27680 d640baeb49a7899f8e4698e760c1d86e 309 Gene3D G3DSA:3.40.190.10 185 271 8.0E-23 T 29-03-2018 Y880_RS27680 d640baeb49a7899f8e4698e760c1d86e 309 Gene3D G3DSA:1.10.10.10 2 93 3.7E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27680 d640baeb49a7899f8e4698e760c1d86e 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 7.7E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09760 070842849ebf986bca6cbf2194bdbd6b 204 Gene3D G3DSA:1.10.10.60 1 62 5.6E-12 T 29-03-2018 Y880_RS09760 070842849ebf986bca6cbf2194bdbd6b 204 Gene3D G3DSA:1.10.357.10 63 195 9.2E-21 T 29-03-2018 Y880_RS09760 070842849ebf986bca6cbf2194bdbd6b 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 9.8E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS09760 070842849ebf986bca6cbf2194bdbd6b 204 SUPERFAMILY SSF48498 81 195 4.79E-27 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS09760 070842849ebf986bca6cbf2194bdbd6b 204 SUPERFAMILY SSF46689 2 70 9.23E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09300 a52870b0b55ce24dc94eb9dd09c9f41a 391 SUPERFAMILY SSF111369 51 252 1.44E-24 T 29-03-2018 Y880_RS09300 a52870b0b55ce24dc94eb9dd09c9f41a 391 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 265 6.4E-20 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS09300 a52870b0b55ce24dc94eb9dd09c9f41a 391 Gene3D G3DSA:2.40.50.100 177 383 3.2E-7 T 29-03-2018 Y880_RS09300 a52870b0b55ce24dc94eb9dd09c9f41a 391 Gene3D G3DSA:2.40.50.100 60 124 1.9E-18 T 29-03-2018 Y880_RS09300 a52870b0b55ce24dc94eb9dd09c9f41a 391 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 264 4.3E-39 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS09300 a52870b0b55ce24dc94eb9dd09c9f41a 391 Gene3D G3DSA:1.10.287.470 125 175 3.4E-5 T 29-03-2018 Y880_RS13805 d050d946f65ede25189541fc05179257 354 Gene3D G3DSA:1.10.287.210 191 293 6.3E-28 T 29-03-2018 Y880_RS13805 d050d946f65ede25189541fc05179257 354 Pfam PF02706 Chain length determinant protein 15 108 6.9E-14 T 29-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 Y880_RS13805 d050d946f65ede25189541fc05179257 354 SUPERFAMILY SSF160355 53 316 1.05E-56 T 29-03-2018 Y880_RS13805 d050d946f65ede25189541fc05179257 354 Gene3D G3DSA:3.30.1890.10 41 190 5.3E-25 T 29-03-2018 Y880_RS03705 041c5a321d60c90572de966393449b33 218 SUPERFAMILY SSF47413 43 104 1.45E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS03705 041c5a321d60c90572de966393449b33 218 Pfam PF07883 Cupin domain 160 207 1.5E-7 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS03705 041c5a321d60c90572de966393449b33 218 Gene3D G3DSA:2.60.120.10 108 217 1.1E-12 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS03705 041c5a321d60c90572de966393449b33 218 SMART SM00530 48 103 6.1E-14 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS03705 041c5a321d60c90572de966393449b33 218 Pfam PF01381 Helix-turn-helix 49 98 8.1E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS03705 041c5a321d60c90572de966393449b33 218 Gene3D G3DSA:1.10.260.40 40 107 2.7E-15 T 29-03-2018 Y880_RS03705 041c5a321d60c90572de966393449b33 218 SUPERFAMILY SSF51182 88 213 2.29E-15 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS02685 b6e3142ace7dc55110925d556a44365b 267 Gene3D G3DSA:3.40.50.150 1 267 1.4E-44 T 29-03-2018 Y880_RS02685 b6e3142ace7dc55110925d556a44365b 267 Pfam PF13649 Methyltransferase domain 86 168 6.0E-11 T 29-03-2018 Y880_RS02685 b6e3142ace7dc55110925d556a44365b 267 PIRSF PIRSF018249 1 267 5.7E-82 T 29-03-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 Y880_RS02685 b6e3142ace7dc55110925d556a44365b 267 SUPERFAMILY SSF53335 1 249 2.34E-39 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS08960 36de7b7a201272da978954203a39db0b 541 SUPERFAMILY SSF53720 22 511 1.07E-105 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS08960 36de7b7a201272da978954203a39db0b 541 Gene3D G3DSA:3.40.605.10 27 303 4.3E-53 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS08960 36de7b7a201272da978954203a39db0b 541 Gene3D G3DSA:3.40.309.10 304 491 1.8E-46 T 29-03-2018 Y880_RS08960 36de7b7a201272da978954203a39db0b 541 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 313 324 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS08960 36de7b7a201272da978954203a39db0b 541 Pfam PF00171 Aldehyde dehydrogenase family 64 505 2.9E-94 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 SUPERFAMILY SSF52374 3 312 6.14E-102 T 29-03-2018 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 SUPERFAMILY SSF47323 316 458 3.79E-41 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 Gene3D G3DSA:3.40.50.620 1 305 1.5E-89 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 SMART SM00840 340 401 7.6E-27 T 29-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 Gene3D G3DSA:1.20.120.640 306 393 4.1E-22 T 29-03-2018 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 459 39.091 T 29-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 2.7E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 2.7E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 2.7E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 2.7E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 313 2.1E-133 T 29-03-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 Pfam PF09190 DALR domain 340 401 8.1E-23 T 29-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Y880_RS06070 dcef9887406cab4a844aca18284082c4 460 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 457 1.5E-176 T 29-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Y880_RS20085 d0fe92fae0475328e66940b0f320d2ff 278 Gene3D G3DSA:1.20.5.50 72 160 0.0035 T 29-03-2018 Y880_RS20085 d0fe92fae0475328e66940b0f320d2ff 278 Gene3D G3DSA:1.20.120.330 161 278 1.8E-6 T 29-03-2018 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 617 651 1.2E-9 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Gene3D G3DSA:2.70.20.10 360 477 8.1E-22 T 29-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Gene3D G3DSA:1.10.460.10 478 621 1.6E-25 T 29-03-2018 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Gene3D G3DSA:1.10.460.10 151 359 1.7E-40 T 29-03-2018 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 SUPERFAMILY SSF57783 616 650 2.04E-9 T 29-03-2018 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Pfam PF01131 DNA topoisomerase 152 586 8.2E-111 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 SMART SM00436 122 217 8.9E-35 T 29-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 647 3.8E-221 T 29-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 2.9E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 96 109 2.9E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 2.9E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 187 205 2.9E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 518 532 2.9E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 SMART SM00493 1 122 2.8E-23 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Pfam PF01751 Toprim domain 3 128 1.9E-16 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Gene3D G3DSA:3.40.50.140 1 150 2.9E-40 T 29-03-2018 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 Gene3D G3DSA:3.30.65.10 622 660 1.2E-13 T 29-03-2018 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 SUPERFAMILY SSF56712 1 602 6.02E-179 T 29-03-2018 IPR023405 DNA topoisomerase, type IA, core domain Y880_RS11730 d35233c0123df858e151d89e5afda563 670 SMART SM00437 271 555 2.3E-64 T 29-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Y880_RS11730 d35233c0123df858e151d89e5afda563 670 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 308 323 - T 29-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Y880_RS08865 e209288f8aa9d26befb7b6fea05efaa0 362 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 39 334 1.6E-49 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS08865 e209288f8aa9d26befb7b6fea05efaa0 362 SUPERFAMILY SSF51197 23 336 1.51E-81 T 29-03-2018 Y880_RS08865 e209288f8aa9d26befb7b6fea05efaa0 362 Gene3D G3DSA:3.60.130.10 19 339 7.6E-70 T 29-03-2018 Y880_RS28780 3f285123ea49ec743f122f37fddc1f8d 189 Gene3D G3DSA:1.20.950.20 1 188 3.8E-37 T 29-03-2018 Y880_RS28780 3f285123ea49ec743f122f37fddc1f8d 189 Pfam PF01292 Prokaryotic cytochrome b561 9 180 2.4E-31 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y880_RS28780 3f285123ea49ec743f122f37fddc1f8d 189 SUPERFAMILY SSF81342 4 181 5.57E-41 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y880_RS29765 caa3430308d9a13e3279cd0cf11b3066 256 Gene3D G3DSA:2.10.109.10 117 246 3.2E-18 T 29-03-2018 Y880_RS29765 caa3430308d9a13e3279cd0cf11b3066 256 SUPERFAMILY SSF51306 109 243 2.09E-21 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS29765 caa3430308d9a13e3279cd0cf11b3066 256 SUPERFAMILY SSF47413 10 74 9.98E-13 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS29765 caa3430308d9a13e3279cd0cf11b3066 256 Gene3D G3DSA:1.10.260.40 11 79 5.8E-16 T 29-03-2018 Y880_RS29765 caa3430308d9a13e3279cd0cf11b3066 256 Pfam PF01381 Helix-turn-helix 16 69 3.2E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS29765 caa3430308d9a13e3279cd0cf11b3066 256 Pfam PF00717 Peptidase S24-like 159 224 3.8E-11 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS29765 caa3430308d9a13e3279cd0cf11b3066 256 SMART SM00530 15 69 2.0E-14 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS07585 0c09c3e8992d697c88964f911d3cb7c2 213 Hamap MF_01969 Kynurenine formamidase [kynB]. 5 209 44.805 T 29-03-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y880_RS07585 0c09c3e8992d697c88964f911d3cb7c2 213 SUPERFAMILY SSF102198 4 207 2.09E-59 T 29-03-2018 Y880_RS07585 0c09c3e8992d697c88964f911d3cb7c2 213 Gene3D G3DSA:3.50.30.50 2 210 2.0E-46 T 29-03-2018 Y880_RS07585 0c09c3e8992d697c88964f911d3cb7c2 213 TIGRFAM TIGR03035 trp_arylform: arylformamidase 5 209 4.3E-104 T 29-03-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y880_RS07585 0c09c3e8992d697c88964f911d3cb7c2 213 Pfam PF04199 Putative cyclase 8 152 1.1E-17 T 29-03-2018 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y880_RS02275 a02c431226e7dd921b3987e1fef10667 206 Gene3D G3DSA:2.160.10.10 84 193 8.4E-17 T 29-03-2018 Y880_RS02275 a02c431226e7dd921b3987e1fef10667 206 SUPERFAMILY SSF51161 47 175 2.63E-19 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS02275 a02c431226e7dd921b3987e1fef10667 206 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 129 160 8.8E-5 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS12220 a7647a1e398569b18378d94138760b73 188 TIGRFAM TIGR00038 efp: translation elongation factor P 3 186 8.5E-61 T 29-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 SMART SM01185 67 122 3.1E-14 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 Gene3D G3DSA:2.40.50.140 130 185 4.6E-22 T 29-03-2018 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 122 7.7E-13 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 SUPERFAMILY SSF50249 130 186 6.17E-15 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS12220 a7647a1e398569b18378d94138760b73 188 SMART SM00841 130 185 7.5E-25 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 PIRSF PIRSF005901 1 187 4.0E-57 T 29-03-2018 IPR020599 Translation elongation factor P/YeiP Y880_RS12220 a7647a1e398569b18378d94138760b73 188 Pfam PF09285 Elongation factor P, C-terminal 130 185 3.3E-21 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 SUPERFAMILY SSF50104 1 62 5.48E-17 T 29-03-2018 IPR008991 Translation protein SH3-like domain Y880_RS12220 a7647a1e398569b18378d94138760b73 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 1.3E-21 T 29-03-2018 IPR013185 Translation elongation factor, KOW-like Y880_RS12220 a7647a1e398569b18378d94138760b73 188 SUPERFAMILY SSF50249 65 128 1.67E-12 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS12220 a7647a1e398569b18378d94138760b73 188 Gene3D G3DSA:2.30.30.30 2 61 3.3E-21 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 Hamap MF_00141 Elongation factor P [efp]. 1 186 48.49 T 29-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Y880_RS12220 a7647a1e398569b18378d94138760b73 188 Gene3D G3DSA:2.40.50.140 65 127 2.9E-17 T 29-03-2018 Y880_RS01190 1f7a5d3b3431fa9ef9c8f6945e765644 331 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 265 3.0E-74 T 29-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Y880_RS01190 1f7a5d3b3431fa9ef9c8f6945e765644 331 PIRSF PIRSF006470 1 329 7.3E-124 T 29-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Y880_RS01190 1f7a5d3b3431fa9ef9c8f6945e765644 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 313 1.7E-106 T 29-03-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 404 3.7E-131 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 Pfam PF01842 ACT domain 268 325 2.9E-10 T 29-03-2018 IPR002912 ACT domain Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 SUPERFAMILY SSF55021 249 327 1.4E-17 T 29-03-2018 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 Gene3D G3DSA:3.30.70.260 235 330 2.6E-24 T 29-03-2018 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 SUPERFAMILY SSF55021 332 405 4.37E-25 T 29-03-2018 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 PIRSF PIRSF000726 57 411 5.7E-153 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 PIRSF PIRSF000726 1 62 1.4E-23 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 403 1.8E-117 T 29-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 Gene3D G3DSA:3.30.70.260 331 403 1.5E-22 T 29-03-2018 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 Pfam PF13840 ACT domain 339 399 1.8E-15 T 29-03-2018 IPR027795 GATS-like ACT domain Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 Gene3D G3DSA:3.40.1160.10 1 234 1.7E-73 T 29-03-2018 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 Pfam PF00696 Amino acid kinase family 3 229 5.7E-49 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 29-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Y880_RS01290 e938cfecf68233c7f3f8b42446c07b92 412 SUPERFAMILY SSF53633 4 241 1.31E-75 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS16000 ea911716e97b88d5c82d1f8b5c49db39 65 SUPERFAMILY SSF55008 2 64 3.8E-16 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS16000 ea911716e97b88d5c82d1f8b5c49db39 65 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y880_RS16000 ea911716e97b88d5c82d1f8b5c49db39 65 Gene3D G3DSA:3.30.70.100 1 65 4.3E-17 T 29-03-2018 Y880_RS16000 ea911716e97b88d5c82d1f8b5c49db39 65 Pfam PF00403 Heavy-metal-associated domain 3 60 1.8E-12 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 SUPERFAMILY SSF53955 120 279 1.13E-41 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 SUPERFAMILY SSF54106 420 462 1.44E-11 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Gene3D G3DSA:1.10.530.10 37 264 1.4E-32 T 29-03-2018 Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 140 168 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Pfam PF06474 MltD lipid attachment motif 1 34 1.1E-15 T 29-03-2018 IPR010511 Lytic murein transglycosylase D , lipid attachment domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Gene3D G3DSA:3.10.350.10 407 479 2.1E-15 T 29-03-2018 Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Gene3D G3DSA:3.10.350.10 276 339 0.0077 T 29-03-2018 Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Gene3D G3DSA:3.10.350.10 480 534 2.2E-13 T 29-03-2018 Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Gene3D G3DSA:3.10.350.10 347 394 6.4E-15 T 29-03-2018 Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 SUPERFAMILY SSF54106 349 393 3.79E-11 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 SMART SM00257 420 463 3.2E-15 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 SMART SM00257 485 528 2.2E-8 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 SMART SM00257 350 393 8.3E-14 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 SUPERFAMILY SSF54106 484 528 1.83E-10 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Pfam PF01476 LysM domain 486 526 1.2E-8 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Pfam PF01476 LysM domain 421 462 9.2E-14 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Pfam PF01476 LysM domain 351 393 9.4E-13 T 29-03-2018 IPR018392 LysM domain Y880_RS06190 836a8a190e5724b747b049e7de6e78a2 534 Pfam PF01464 Transglycosylase SLT domain 131 230 4.3E-25 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 Y880_RS16780 414b7e35785fa18cf36876ac625185d1 571 Pfam PF01368 DHH family 69 197 5.6E-8 T 29-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y880_RS16780 414b7e35785fa18cf36876ac625185d1 571 Gene3D G3DSA:3.90.1640.10 48 238 6.3E-20 T 29-03-2018 Y880_RS16780 414b7e35785fa18cf36876ac625185d1 571 Pfam PF02272 DHHA1 domain 318 445 4.6E-29 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Y880_RS16780 414b7e35785fa18cf36876ac625185d1 571 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 20 566 3.0E-149 T 29-03-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 Y880_RS16780 414b7e35785fa18cf36876ac625185d1 571 SUPERFAMILY SSF64182 44 459 1.02E-118 T 29-03-2018 Y880_RS01230 bee4633a6800a4b8c341bd954915e949 254 SMART SM00382 28 225 3.2E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS01230 bee4633a6800a4b8c341bd954915e949 254 Gene3D G3DSA:3.40.50.300 2 252 7.7E-69 T 29-03-2018 Y880_RS01230 bee4633a6800a4b8c341bd954915e949 254 PIRSF PIRSF039085 1 254 1.5E-116 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y880_RS01230 bee4633a6800a4b8c341bd954915e949 254 Pfam PF00005 ABC transporter 19 178 5.4E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS01230 bee4633a6800a4b8c341bd954915e949 254 SUPERFAMILY SSF52540 4 248 1.89E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01230 bee4633a6800a4b8c341bd954915e949 254 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS10830 876d0390012f968ed85c2afa4486b5ec 324 SUPERFAMILY SSF50129 10 141 1.05E-33 T 29-03-2018 IPR011032 GroES-like Y880_RS10830 876d0390012f968ed85c2afa4486b5ec 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 2.0E-6 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS10830 876d0390012f968ed85c2afa4486b5ec 324 Gene3D G3DSA:3.40.50.720 133 292 1.1E-27 T 29-03-2018 Y880_RS10830 876d0390012f968ed85c2afa4486b5ec 324 SUPERFAMILY SSF51735 112 270 2.19E-37 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS10830 876d0390012f968ed85c2afa4486b5ec 324 Pfam PF00107 Zinc-binding dehydrogenase 151 256 1.1E-20 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS10830 876d0390012f968ed85c2afa4486b5ec 324 SMART SM00829 11 322 5.5E-14 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS10830 876d0390012f968ed85c2afa4486b5ec 324 Gene3D G3DSA:3.90.180.10 3 132 9.1E-32 T 29-03-2018 Y880_RS04515 63a9a10c30ae3f4ff06d2bced0da08ed 86 Pfam PF05488 PAAR motif 7 76 3.2E-21 T 29-03-2018 IPR008727 PAAR motif Y880_RS13965 71c02ee7fa5fe8331e7af1cff528a6ea 420 Pfam PF01547 Bacterial extracellular solute-binding protein 43 322 1.9E-26 T 29-03-2018 IPR006059 Solute-binding family 1 GO:0006810 Y880_RS13965 71c02ee7fa5fe8331e7af1cff528a6ea 420 Gene3D G3DSA:3.40.190.10 25 198 9.2E-26 T 29-03-2018 Y880_RS13965 71c02ee7fa5fe8331e7af1cff528a6ea 420 Gene3D G3DSA:3.40.190.10 199 371 1.6E-10 T 29-03-2018 Y880_RS13965 71c02ee7fa5fe8331e7af1cff528a6ea 420 SUPERFAMILY SSF53850 24 418 3.62E-64 T 29-03-2018 Y880_RS13770 5b5e3b40f85d9f1f2f5d1af723f36cf3 376 SUPERFAMILY SSF53756 25 372 3.3E-67 T 29-03-2018 Y880_RS13770 5b5e3b40f85d9f1f2f5d1af723f36cf3 376 Pfam PF13477 Glycosyl transferase 4-like 5 154 1.1E-22 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS13770 5b5e3b40f85d9f1f2f5d1af723f36cf3 376 Gene3D G3DSA:3.40.50.2000 189 356 1.0E-38 T 29-03-2018 Y880_RS13770 5b5e3b40f85d9f1f2f5d1af723f36cf3 376 Pfam PF00534 Glycosyl transferases group 1 191 349 1.3E-27 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS13770 5b5e3b40f85d9f1f2f5d1af723f36cf3 376 Gene3D G3DSA:3.40.50.2000 16 188 3.4E-16 T 29-03-2018 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 174 371 7.0E-15 T 29-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 SUPERFAMILY SSF55961 142 373 6.83E-29 T 29-03-2018 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 Gene3D G3DSA:2.102.10.10 26 137 8.8E-22 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 SUPERFAMILY SSF50022 3 142 5.24E-36 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 Pfam PF00355 Rieske [2Fe-2S] domain 29 108 4.2E-13 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 13 38 8.6E-9 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 43 58 8.6E-9 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 83 103 8.6E-9 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS02270 57fb940db0d8181ab6894afb2a9d781b 376 Gene3D G3DSA:3.90.380.10 138 376 9.1E-32 T 29-03-2018 Y880_RS21735 9bdb13d2d4f8b63348e9de38646de5aa 194 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 29-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Y880_RS21735 9bdb13d2d4f8b63348e9de38646de5aa 194 Gene3D G3DSA:3.40.50.1470 1 194 6.1E-65 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y880_RS21735 9bdb13d2d4f8b63348e9de38646de5aa 194 SUPERFAMILY SSF53178 5 191 1.57E-67 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y880_RS21735 9bdb13d2d4f8b63348e9de38646de5aa 194 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 34.945 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y880_RS21735 9bdb13d2d4f8b63348e9de38646de5aa 194 Pfam PF01195 Peptidyl-tRNA hydrolase 6 189 7.8E-52 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y880_RS21735 9bdb13d2d4f8b63348e9de38646de5aa 194 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 190 3.3E-62 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y880_RS21735 9bdb13d2d4f8b63348e9de38646de5aa 194 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 29-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Y880_RS27225 ec181c893c4c612a8c89fbe4a7af21e8 136 Pfam PF06355 Aegerolysin 4 134 3.4E-44 T 29-03-2018 IPR009413 Hemolysin, aegerolysin type GO:0019836 Y880_RS27225 ec181c893c4c612a8c89fbe4a7af21e8 136 PIRSF PIRSF007951 1 136 3.4E-61 T 29-03-2018 IPR009413 Hemolysin, aegerolysin type GO:0019836 Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 Gene3D G3DSA:1.10.3210.10 4 251 3.4E-53 T 29-03-2018 Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 Pfam PF01966 HD domain 71 137 6.6E-8 T 29-03-2018 IPR006674 HD domain Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 SMART SM00471 67 271 6.3E-10 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 2 498 45.146 T 29-03-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 Gene3D G3DSA:1.10.3410.10 252 387 6.7E-21 T 29-03-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 SUPERFAMILY SSF109604 240 429 1.93E-58 T 29-03-2018 Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 SUPERFAMILY SSF109604 478 493 1.93E-58 T 29-03-2018 Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 SUPERFAMILY SSF109604 170 203 1.93E-58 T 29-03-2018 Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 SUPERFAMILY SSF109604 36 137 1.93E-58 T 29-03-2018 Y880_RS02500 2812d799610216be9bb57864fa819f5b 498 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 36 496 2.9E-108 T 29-03-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 Y880_RS25295 0c066e2e70e9547a7a28a2c737101a64 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 2.8E-90 T 29-03-2018 IPR005229 Conserved hypothetical protein CHP00255 Y880_RS25295 0c066e2e70e9547a7a28a2c737101a64 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 2.7E-34 T 29-03-2018 IPR013551 Domain of unknown function DUF1732 Y880_RS25295 0c066e2e70e9547a7a28a2c737101a64 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 1.7E-40 T 29-03-2018 IPR013527 YicC-like, N-terminal Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 69 2.7E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 SMART SM00345 10 69 5.8E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 SUPERFAMILY SSF48008 91 232 1.14E-26 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 SUPERFAMILY SSF46785 3 73 5.81E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 Gene3D G3DSA:1.20.120.530 86 245 1.1E-31 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 Pfam PF07729 FCD domain 94 224 3.8E-26 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 Gene3D G3DSA:1.10.10.10 1 77 9.4E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 SMART SM00895 94 225 3.4E-26 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 2.9E-7 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS25405 88408a72309313fa5ab1a427e0a6d29f 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 2.9E-7 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS20950 a431e51240226b52fa2730fd34fdac58 406 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 29-03-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 Y880_RS20950 a431e51240226b52fa2730fd34fdac58 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 370 384 5.5E-19 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS20950 a431e51240226b52fa2730fd34fdac58 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 5.5E-19 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS20950 a431e51240226b52fa2730fd34fdac58 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 5.5E-19 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS20950 a431e51240226b52fa2730fd34fdac58 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 386 405 5.5E-19 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS20950 a431e51240226b52fa2730fd34fdac58 406 Pfam PF00482 Type II secretion system (T2SS), protein F 276 397 3.8E-32 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS20950 a431e51240226b52fa2730fd34fdac58 406 Pfam PF00482 Type II secretion system (T2SS), protein F 71 194 5.5E-33 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS25455 5305c3e21a4455b45a70215bb3160137 277 Pfam PF00005 ABC transporter 48 201 6.8E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS25455 5305c3e21a4455b45a70215bb3160137 277 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 32 277 2.3E-125 T 29-03-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Y880_RS25455 5305c3e21a4455b45a70215bb3160137 277 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS25455 5305c3e21a4455b45a70215bb3160137 277 SUPERFAMILY SSF52540 28 264 8.28E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS25455 5305c3e21a4455b45a70215bb3160137 277 SMART SM00382 55 257 3.8E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS25455 5305c3e21a4455b45a70215bb3160137 277 Gene3D G3DSA:3.40.50.300 17 275 8.4E-59 T 29-03-2018 Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 SUPERFAMILY SSF53474 26 276 1.83E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 Gene3D G3DSA:3.40.50.1820 29 280 6.7E-41 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 156 169 2.3E-7 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 110 2.3E-7 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 142 155 2.3E-7 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 98 109 3.0E-6 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 142 156 3.0E-6 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 71 79 3.0E-6 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y880_RS16630 1f6b2cdf5b3838b9acbe040244107e1a 301 Pfam PF12146 Serine aminopeptidase, S33 67 171 2.1E-15 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 Y880_RS20530 d6ea4325e9c8a420afed33d8203f3704 252 SUPERFAMILY SSF102705 5 251 3.01E-79 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Y880_RS20530 d6ea4325e9c8a420afed33d8203f3704 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 6 251 1.0E-61 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Y880_RS20530 d6ea4325e9c8a420afed33d8203f3704 252 Gene3D G3DSA:3.40.1390.30 1 111 7.7E-27 T 29-03-2018 Y880_RS20530 d6ea4325e9c8a420afed33d8203f3704 252 Gene3D G3DSA:3.40.1390.30 112 223 5.4E-36 T 29-03-2018 Y880_RS20530 d6ea4325e9c8a420afed33d8203f3704 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 12 240 1.1E-57 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 Pfam PF00027 Cyclic nucleotide-binding domain 22 114 4.9E-22 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 31 47 - T 29-03-2018 IPR018488 Cyclic nucleotide-binding, conserved site Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 Pfam PF00325 Bacterial regulatory proteins, crp family 170 200 3.0E-14 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 186 201 3.3E-9 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 170 186 3.3E-9 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 ProSitePatterns PS00042 Crp-type HTH domain signature. 172 195 - T 29-03-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 Gene3D G3DSA:1.10.10.10 149 214 9.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 Gene3D G3DSA:2.60.120.10 8 148 5.3E-31 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 72 93 - T 29-03-2018 IPR018488 Cyclic nucleotide-binding, conserved site Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 SUPERFAMILY SSF46785 143 211 6.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 SMART SM00419 164 212 6.6E-15 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 SMART SM00100 3 126 2.5E-27 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS29960 d913cf1a8f4296daab521d724340c0d0 214 SUPERFAMILY SSF51206 12 141 1.22E-34 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like Y880_RS17235 6356ae6da6302d84ee244a7878e4eda6 379 Pfam PF04055 Radical SAM superfamily 112 280 8.8E-16 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS17235 6356ae6da6302d84ee244a7878e4eda6 379 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 8 355 73.119 T 29-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS17235 6356ae6da6302d84ee244a7878e4eda6 379 SUPERFAMILY SSF102114 108 322 8.04E-14 T 29-03-2018 Y880_RS17235 6356ae6da6302d84ee244a7878e4eda6 379 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 5 359 9.8E-144 T 29-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS17235 6356ae6da6302d84ee244a7878e4eda6 379 PIRSF PIRSF006004 4 368 4.7E-152 T 29-03-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS17235 6356ae6da6302d84ee244a7878e4eda6 379 Gene3D G3DSA:3.20.20.70 18 351 3.0E-40 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS00545 9aa3fbc666f90cf45d673880747dbf90 101 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.0E-23 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y880_RS00545 9aa3fbc666f90cf45d673880747dbf90 101 SUPERFAMILY SSF103481 5 100 3.4E-19 T 29-03-2018 Y880_RS01745 19e6fdc92cd54a19b2573742d08e2765 839 Pfam PF13953 PapC C-terminal domain 759 820 3.9E-15 T 29-03-2018 IPR025949 PapC-like, C-terminal domain Y880_RS01745 19e6fdc92cd54a19b2573742d08e2765 839 Pfam PF13954 PapC N-terminal domain 36 184 5.9E-41 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 Y880_RS01745 19e6fdc92cd54a19b2573742d08e2765 839 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 313 323 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site Y880_RS01745 19e6fdc92cd54a19b2573742d08e2765 839 SUPERFAMILY SSF141729 58 176 1.44E-28 T 29-03-2018 Y880_RS01745 19e6fdc92cd54a19b2573742d08e2765 839 Pfam PF00577 Outer membrane usher protein 199 749 6.4E-165 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 Y880_RS05895 77b3a80ecdcce5daf4ac17377993b26c 253 Gene3D G3DSA:3.90.70.10 57 205 3.9E-29 T 29-03-2018 Y880_RS05895 77b3a80ecdcce5daf4ac17377993b26c 253 Pfam PF03412 Peptidase C39 family 57 192 2.5E-20 T 29-03-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Y880_RS16875 d0acd50c847c629539deb0382609f287 252 PIRSF PIRSF000386 5 250 1.7E-97 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y880_RS16875 d0acd50c847c629539deb0382609f287 252 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 27 225 1.7E-64 T 29-03-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y880_RS16875 d0acd50c847c629539deb0382609f287 252 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 5 234 7.9E-98 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y880_RS16875 d0acd50c847c629539deb0382609f287 252 SUPERFAMILY SSF75217 5 249 3.4E-98 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases Y880_RS16875 d0acd50c847c629539deb0382609f287 252 Gene3D G3DSA:1.10.1270.20 175 252 2.5E-33 T 29-03-2018 Y880_RS16875 d0acd50c847c629539deb0382609f287 252 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 252 114.841 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y880_RS16875 d0acd50c847c629539deb0382609f287 252 Gene3D G3DSA:3.40.1280.10 4 174 7.2E-73 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y880_RS05160 5b403c7065f05197a3f4078b6e376c77 220 Gene3D G3DSA:1.20.1050.10 141 196 8.0E-14 T 29-03-2018 Y880_RS05160 5b403c7065f05197a3f4078b6e376c77 220 Gene3D G3DSA:1.20.1050.10 90 140 5.6E-16 T 29-03-2018 Y880_RS05160 5b403c7065f05197a3f4078b6e376c77 220 Pfam PF00043 Glutathione S-transferase, C-terminal domain 113 192 2.0E-8 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS05160 5b403c7065f05197a3f4078b6e376c77 220 SUPERFAMILY SSF47616 74 197 8.63E-34 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS05160 5b403c7065f05197a3f4078b6e376c77 220 Gene3D G3DSA:3.40.30.10 1 89 1.4E-29 T 29-03-2018 Y880_RS05160 5b403c7065f05197a3f4078b6e376c77 220 SUPERFAMILY SSF52833 1 81 5.83E-25 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS05160 5b403c7065f05197a3f4078b6e376c77 220 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 77 7.2E-17 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 SUPERFAMILY SSF53067 3 235 1.01E-65 T 29-03-2018 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 342 362 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 241 428 1.0E-30 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 SUPERFAMILY SSF53067 234 470 5.94E-46 T 29-03-2018 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 Gene3D G3DSA:3.30.420.40 229 471 1.7E-48 T 29-03-2018 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 PIRSF PIRSF000538 1 471 2.1E-100 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 215 7.0E-48 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y880_RS04410 ec229df62110e57eafd7546205fe49f2 471 Gene3D G3DSA:3.30.420.40 2 228 9.6E-63 T 29-03-2018 Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 51 64 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 239 248 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 SUPERFAMILY SSF52540 28 267 3.13E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 Gene3D G3DSA:1.10.8.60 199 269 1.4E-21 T 29-03-2018 Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 SMART SM00382 47 191 4.5E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 Gene3D G3DSA:3.40.50.300 23 198 3.9E-20 T 29-03-2018 Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 112 127 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS17895 ef022425242fc54985eaa9a40aa81c9a 324 Pfam PF00158 Sigma-54 interaction domain 32 186 1.3E-47 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 127 156 8.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 210 238 8.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 297 314 8.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 165 194 8.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 243 272 8.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 93 122 8.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 Pfam PF00154 recA bacterial DNA recombination protein 7 267 7.5E-144 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 Gene3D G3DSA:3.40.50.300 26 268 1.0E-46 T 29-03-2018 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 SUPERFAMILY SSF52540 5 267 5.88E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 ProSitePatterns PS00321 recA signature. 213 221 - T 29-03-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 1.9E-169 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 Gene3D G3DSA:3.30.250.10 269 326 1.3E-23 T 29-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 SUPERFAMILY SSF54752 269 324 8.24E-20 T 29-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 SMART SM00382 57 228 9.7E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS16235 4a2e2c874a32e8d29b02bf6bcd78e201 346 Hamap MF_00268 Protein RecA [recA]. 5 329 50.98 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.40.50.2300 1 131 8.6E-9 T 29-03-2018 Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 265 424 1.2E-14 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.30.450.20 132 252 1.8E-13 T 29-03-2018 Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF52172 6 142 3.7E-9 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 Pfam PF00990 Diguanylate cyclase, GGDEF domain 268 422 8.4E-19 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 Pfam PF00563 EAL domain 446 677 5.4E-58 T 29-03-2018 IPR001633 EAL domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF55785 131 251 5.76E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF141868 446 681 7.32E-53 T 29-03-2018 IPR001633 EAL domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.30.70.270 255 431 7.9E-33 T 29-03-2018 Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 Pfam PF00989 PAS fold 147 249 1.0E-6 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 SMART SM00052 439 683 1.6E-38 T 29-03-2018 IPR001633 EAL domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.20.20.450 441 689 1.0E-58 T 29-03-2018 IPR001633 EAL domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 SMART SM00267 256 428 3.1E-22 T 29-03-2018 IPR000160 GGDEF domain Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF55073 273 430 4.87E-24 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS23325 8e52756397cb089fff4b9edd6cfb1124 691 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 251 2.6E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS27805 a036abad58bd44d65c555d40fbdda7fb 440 SUPERFAMILY SSF103473 25 437 2.49E-73 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS27805 a036abad58bd44d65c555d40fbdda7fb 440 Pfam PF07690 Major Facilitator Superfamily 40 396 2.4E-51 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS27805 a036abad58bd44d65c555d40fbdda7fb 440 Gene3D G3DSA:1.20.1250.20 233 439 2.7E-17 T 29-03-2018 Y880_RS27805 a036abad58bd44d65c555d40fbdda7fb 440 Gene3D G3DSA:1.20.1250.20 26 227 1.1E-33 T 29-03-2018 Y880_RS26890 61841e40a4f49f8cff558acf93d28826 306 Gene3D G3DSA:3.40.190.10 176 262 1.7E-30 T 29-03-2018 Y880_RS26890 61841e40a4f49f8cff558acf93d28826 306 Gene3D G3DSA:3.40.190.10 89 175 1.1E-17 T 29-03-2018 Y880_RS26890 61841e40a4f49f8cff558acf93d28826 306 SUPERFAMILY SSF46785 5 84 1.19E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26890 61841e40a4f49f8cff558acf93d28826 306 Gene3D G3DSA:1.10.10.10 3 84 6.0E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26890 61841e40a4f49f8cff558acf93d28826 306 Pfam PF03466 LysR substrate binding domain 88 291 4.9E-48 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS26890 61841e40a4f49f8cff558acf93d28826 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.1E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26890 61841e40a4f49f8cff558acf93d28826 306 SUPERFAMILY SSF53850 88 294 6.52E-52 T 29-03-2018 Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 SUPERFAMILY SSF46785 4 87 2.72E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 Gene3D G3DSA:3.40.190.10 179 261 7.5E-20 T 29-03-2018 Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 SUPERFAMILY SSF53850 95 294 2.71E-26 T 29-03-2018 Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.5E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 Pfam PF03466 LysR substrate binding domain 95 293 6.9E-22 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 Gene3D G3DSA:3.40.190.10 92 178 3.0E-6 T 29-03-2018 Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 Gene3D G3DSA:1.10.10.10 2 88 1.7E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 6.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 6.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26775 2d9e9a69d9e1ee4ef456a1c101c79eb2 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 6.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 PIRSF PIRSF001109 2 469 1.0E-184 T 29-03-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 Gene3D G3DSA:3.40.50.1480 3 150 1.2E-69 T 29-03-2018 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 Gene3D G3DSA:3.40.50.1480 151 211 3.7E-25 T 29-03-2018 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 SUPERFAMILY SSF51735 199 381 1.47E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 SUPERFAMILY SSF52283 10 198 8.5E-108 T 29-03-2018 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 SUPERFAMILY SSF52283 382 469 8.5E-108 T 29-03-2018 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 149 1.9E-70 T 29-03-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 SMART SM00996 12 468 1.0E-276 T 29-03-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 SMART SM00997 199 381 4.8E-82 T 29-03-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 461 43.835 T 29-03-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 461 2.8E-153 T 29-03-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 29-03-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 199 381 1.5E-56 T 29-03-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 221 237 - T 29-03-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y880_RS28830 52da69c76fbcdb743fff971145cbd520 469 Gene3D G3DSA:3.40.50.1480 212 442 5.9E-60 T 29-03-2018 Y880_RS26695 5385aa3ffa196a7f316a6852f6814a19 185 Pfam PF01300 Telomere recombination 13 184 4.8E-43 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 Y880_RS26695 5385aa3ffa196a7f316a6852f6814a19 185 Gene3D G3DSA:3.90.870.10 4 183 8.6E-52 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain Y880_RS26695 5385aa3ffa196a7f316a6852f6814a19 185 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 4 183 38.39 T 29-03-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 Y880_RS26695 5385aa3ffa196a7f316a6852f6814a19 185 SUPERFAMILY SSF55821 7 184 1.46E-52 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain Y880_RS15045 967dd38b45b2e52a97e106b5d8e77b35 231 Gene3D G3DSA:2.40.30.70 4 143 1.3E-53 T 29-03-2018 IPR023370 TsaA-like domain Y880_RS15045 967dd38b45b2e52a97e106b5d8e77b35 231 ProSitePatterns PS01318 TsaA-like domain signature. 86 97 - T 29-03-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site Y880_RS15045 967dd38b45b2e52a97e106b5d8e77b35 231 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 4 143 1.6E-44 T 29-03-2018 IPR023370 TsaA-like domain Y880_RS15045 967dd38b45b2e52a97e106b5d8e77b35 231 Pfam PF01980 Uncharacterised protein family UPF0066 20 138 3.0E-41 T 29-03-2018 IPR023370 TsaA-like domain Y880_RS15045 967dd38b45b2e52a97e106b5d8e77b35 231 SUPERFAMILY SSF118196 2 218 9.55E-77 T 29-03-2018 IPR023370 TsaA-like domain Y880_RS15045 967dd38b45b2e52a97e106b5d8e77b35 231 Gene3D G3DSA:3.30.2310.10 144 226 3.7E-22 T 29-03-2018 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:3.30.499.10 372 595 3.1E-64 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 18 910 0.0 T 29-03-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 ProSitePatterns PS01244 Aconitase family signature 2. 512 525 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:3.40.1060.10 240 371 1.3E-44 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 Pfam PF00330 Aconitase family (aconitate hydratase) 75 581 1.2E-182 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 ProSitePatterns PS00450 Aconitase family signature 1. 446 462 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 Pfam PF00694 Aconitase C-terminal domain 710 837 1.0E-49 T 29-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 450 461 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 372 386 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 279 292 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 170 178 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 293 306 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 512 525 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 203 216 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 146 159 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 217 232 7.7E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:3.20.19.10 672 910 1.8E-97 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 SUPERFAMILY SSF52016 649 909 1.1E-90 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:3.30.499.10 37 239 3.6E-76 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS04835 964d627e054e29855550e20ce3d9b3f5 910 SUPERFAMILY SSF53732 5 645 4.05E-227 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS11270 ba0b109136fc137d690fceb46fb7ffd2 76 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 4.1E-29 T 29-03-2018 IPR021250 Protein of unknown function DUF2789 Y880_RS00215 2a828f0bf9d58c7d49e50a48a32c5831 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 77 4.5E-16 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS00215 2a828f0bf9d58c7d49e50a48a32c5831 98 Gene3D G3DSA:3.30.70.100 1 88 1.3E-14 T 29-03-2018 Y880_RS00215 2a828f0bf9d58c7d49e50a48a32c5831 98 SUPERFAMILY SSF54909 3 83 2.02E-17 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS20110 953ccf98cda16299440683d749eb50a3 133 Pfam PF10000 ACT domain 2 69 2.2E-27 T 29-03-2018 IPR018717 Domain of unknown function DUF2241 Y880_RS20110 953ccf98cda16299440683d749eb50a3 133 SUPERFAMILY SSF55021 70 128 2.44E-17 T 29-03-2018 Y880_RS20110 953ccf98cda16299440683d749eb50a3 133 SUPERFAMILY SSF55021 3 66 5.49E-17 T 29-03-2018 Y880_RS20110 953ccf98cda16299440683d749eb50a3 133 Gene3D G3DSA:3.30.2130.10 1 131 8.6E-31 T 29-03-2018 Y880_RS20110 953ccf98cda16299440683d749eb50a3 133 Pfam PF13840 ACT domain 70 126 4.4E-11 T 29-03-2018 IPR027795 GATS-like ACT domain Y880_RS12840 c4385b107294392e57d6b133159bf121 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 16.732 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS12840 c4385b107294392e57d6b133159bf121 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 1.8E-19 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS12840 c4385b107294392e57d6b133159bf121 60 Pfam PF01783 Ribosomal L32p protein family 2 56 3.4E-20 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS12840 c4385b107294392e57d6b133159bf121 60 SUPERFAMILY SSF57829 2 55 9.16E-18 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 Gene3D G3DSA:2.30.40.10 1 57 9.1E-8 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 PIRSF PIRSF038971 3 387 2.2E-146 T 29-03-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 6 387 1.9E-149 T 29-03-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 SUPERFAMILY SSF51556 54 353 8.17E-16 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 Gene3D G3DSA:2.30.40.10 315 387 2.6E-7 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 SUPERFAMILY SSF51338 353 385 7.44E-11 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 SUPERFAMILY SSF51338 3 54 7.44E-11 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS14975 8762f58b095e678816a12051f5ade52a 387 Gene3D G3DSA:3.20.20.140 58 314 1.4E-12 T 29-03-2018 Y880_RS26735 5eba58170056b5eda5a58f8243ab4e21 307 Gene3D G3DSA:3.40.190.10 16 125 1.7E-11 T 29-03-2018 Y880_RS26735 5eba58170056b5eda5a58f8243ab4e21 307 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 22 305 1.3E-127 T 29-03-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 Y880_RS26735 5eba58170056b5eda5a58f8243ab4e21 307 Gene3D G3DSA:3.40.190.100 126 239 2.8E-34 T 29-03-2018 Y880_RS26735 5eba58170056b5eda5a58f8243ab4e21 307 SUPERFAMILY SSF53850 22 295 9.96E-82 T 29-03-2018 Y880_RS26735 5eba58170056b5eda5a58f8243ab4e21 307 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 279 1.1E-55 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 SUPERFAMILY SSF51419 8 233 2.49E-72 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 265 280 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 338 351 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 120 132 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 248 263 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 154 165 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 191 218 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 60 78 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 286 303 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 PRINTS PR00992 Alanine racemase signature 25 41 2.2E-62 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 Pfam PF00842 Alanine racemase, C-terminal domain 232 354 5.2E-40 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 SUPERFAMILY SSF50621 228 355 1.43E-43 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 Pfam PF01168 Alanine racemase, N-terminal domain 8 218 1.0E-70 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 Hamap MF_01201 Alanine racemase. 1 355 35.074 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 Gene3D G3DSA:3.20.20.10 1 216 3.6E-47 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 29-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 SMART SM01005 232 355 2.6E-64 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 TIGRFAM TIGR00492 alr: alanine racemase 3 354 1.8E-107 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS25125 629372daef3e9c5a5abb10cbd41e76ed 357 Gene3D G3DSA:2.40.37.10 217 357 3.2E-51 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS22455 fabc27c43f11f7a0d74abc0110e3f40f 249 SUPERFAMILY SSF53335 4 247 3.19E-36 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22455 fabc27c43f11f7a0d74abc0110e3f40f 249 Gene3D G3DSA:3.40.50.150 8 249 4.9E-44 T 29-03-2018 Y880_RS22455 fabc27c43f11f7a0d74abc0110e3f40f 249 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 249 38.937 T 29-03-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 Y880_RS22455 fabc27c43f11f7a0d74abc0110e3f40f 249 Pfam PF13489 Methyltransferase domain 31 159 6.0E-15 T 29-03-2018 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Pfam PF02574 Homocysteine S-methyltransferase 24 332 8.4E-79 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 SUPERFAMILY SSF82282 15 406 1.31E-116 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Pfam PF02310 B12 binding domain 754 847 1.9E-19 T 29-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 946 1216 1.2E-122 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 SUPERFAMILY SSF47644 657 744 3.66E-28 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Gene3D G3DSA:3.20.20.330 9 344 4.4E-114 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 SMART SM01018 662 745 7.7E-40 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 SUPERFAMILY SSF56507 909 1233 1.07E-126 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Gene3D G3DSA:1.10.1240.10 651 745 2.5E-36 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 TIGRFAM TIGR02082 metH: methionine synthase 20 1200 0.0 T 29-03-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Pfam PF02607 B12 binding domain 664 737 2.4E-24 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 SUPERFAMILY SSF51717 363 636 3.01E-87 T 29-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Gene3D G3DSA:3.10.196.10 964 1088 1.3E-46 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Gene3D G3DSA:3.10.196.10 1089 1234 7.7E-62 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Gene3D G3DSA:3.20.20.20 352 650 5.8E-70 T 29-03-2018 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 SUPERFAMILY SSF52242 748 900 3.01E-44 T 29-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 PIRSF PIRSF000381 8 1203 0.0 T 29-03-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Pfam PF00809 Pterin binding enzyme 367 605 1.7E-56 T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y880_RS06355 68ee84728de6d5bd67f23255e6770aee 1234 Gene3D G3DSA:3.40.50.280 749 902 8.0E-54 T 29-03-2018 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:1.10.287.130 378 471 2.2E-7 T 29-03-2018 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:3.30.450.20 45 189 7.2E-23 T 29-03-2018 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 SUPERFAMILY SSF103190 80 204 1.67E-13 T 29-03-2018 IPR029151 Periplasmic sensor domain-like Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 Pfam PF02743 Cache domain 53 239 8.3E-20 T 29-03-2018 IPR033479 Double Cache domain 1 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 SMART SM00388 407 475 1.7E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 PIRSF PIRSF036431 9 631 4.9E-206 T 29-03-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 Pfam PF00512 His Kinase A (phospho-acceptor) domain 409 472 4.8E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 581 5.9E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 584 602 5.9E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 608 621 5.9E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 567 5.9E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 515 622 3.5E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 SMART SM00387 514 624 1.6E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 SUPERFAMILY SSF47384 396 473 7.85E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 SUPERFAMILY SSF55874 478 624 3.67E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:3.30.450.20 190 318 2.6E-11 T 29-03-2018 Y880_RS03590 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:3.30.565.10 477 629 1.4E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 SUPERFAMILY SSF141868 553 796 4.84E-73 T 29-03-2018 IPR001633 EAL domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 Gene3D G3DSA:3.20.20.450 537 798 9.6E-79 T 29-03-2018 IPR001633 EAL domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 Pfam PF00990 Diguanylate cyclase, GGDEF domain 374 531 2.3E-45 T 29-03-2018 IPR000160 GGDEF domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 370 534 3.0E-44 T 29-03-2018 IPR000160 GGDEF domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 SMART SM00091 245 311 3.4E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 Gene3D G3DSA:3.30.70.270 367 536 1.5E-58 T 29-03-2018 Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 Gene3D G3DSA:3.30.450.20 224 366 3.7E-23 T 29-03-2018 Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 251 369 1.1E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 Pfam PF00989 PAS fold 251 360 7.2E-12 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 SMART SM00052 547 797 2.6E-69 T 29-03-2018 IPR001633 EAL domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 SUPERFAMILY SSF55073 379 537 1.8E-49 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 Pfam PF00563 EAL domain 553 792 5.2E-63 T 29-03-2018 IPR001633 EAL domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 SUPERFAMILY SSF55785 232 361 3.32E-18 T 29-03-2018 IPR000014 PAS domain Y880_RS01055 bdec90abd2aee9bcda0eda579d3449bd 818 SMART SM00267 363 535 5.3E-64 T 29-03-2018 IPR000160 GGDEF domain Y880_RS08495 9fe3ebfdbf963babbf695906caa3630d 488 Gene3D G3DSA:3.90.550.10 6 347 6.2E-84 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS08495 9fe3ebfdbf963babbf695906caa3630d 488 Pfam PF01050 Mannose-6-phosphate isomerase 325 475 1.1E-63 T 29-03-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y880_RS08495 9fe3ebfdbf963babbf695906caa3630d 488 Pfam PF00483 Nucleotidyl transferase 9 296 2.9E-59 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y880_RS08495 9fe3ebfdbf963babbf695906caa3630d 488 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 7 479 3.2E-173 T 29-03-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y880_RS08495 9fe3ebfdbf963babbf695906caa3630d 488 SUPERFAMILY SSF53448 8 292 3.07E-67 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS08495 9fe3ebfdbf963babbf695906caa3630d 488 SUPERFAMILY SSF51182 191 480 3.09E-79 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS08495 9fe3ebfdbf963babbf695906caa3630d 488 Gene3D G3DSA:2.60.120.10 348 459 3.6E-26 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82693 38 130 1.8E-28 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Gene3D G3DSA:3.30.70.1430 38 140 1.2E-29 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82866 808 1027 1.96E-46 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82693 567 671 1.31E-30 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Gene3D G3DSA:3.30.70.1430 569 670 1.6E-19 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Gene3D G3DSA:3.30.2090.10 180 275 2.8E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Gene3D G3DSA:1.20.1640.10 286 510 1.6E-46 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Gene3D G3DSA:3.30.70.1440 674 768 1.2E-18 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1044 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82714 182 271 1.11E-22 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82693 135 182 2.04E-26 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82693 274 330 2.04E-26 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Gene3D G3DSA:1.20.1640.10 847 1029 1.7E-38 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82866 296 497 1.07E-49 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 Gene3D G3DSA:3.30.70.1320 769 846 8.6E-6 T 29-03-2018 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.3E-113 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS28800 a435eee7a44307eada259244fcd7b137 1046 SUPERFAMILY SSF82714 724 811 9.16E-23 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS15485 128699c7f42060ccb8f3ddceda86bb0d 198 Pfam PF00877 NlpC/P60 family 75 181 4.6E-32 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y880_RS15485 128699c7f42060ccb8f3ddceda86bb0d 198 Gene3D G3DSA:3.90.1720.10 22 109 9.0E-17 T 29-03-2018 Y880_RS15485 128699c7f42060ccb8f3ddceda86bb0d 198 SUPERFAMILY SSF54001 58 185 2.94E-43 T 29-03-2018 Y880_RS15485 128699c7f42060ccb8f3ddceda86bb0d 198 Gene3D G3DSA:2.30.260.10 110 186 7.4E-22 T 29-03-2018 Y880_RS10455 af2c11aed6c8217619f25a7cb4963c71 111 PIRSF PIRSF006223 4 111 1.6E-32 T 29-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE Y880_RS10455 af2c11aed6c8217619f25a7cb4963c71 111 Pfam PF04358 DsrC like protein 7 111 4.3E-36 T 29-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE Y880_RS10455 af2c11aed6c8217619f25a7cb4963c71 111 SUPERFAMILY SSF69721 2 111 1.1E-34 T 29-03-2018 IPR025526 DsrC-like domain Y880_RS10455 af2c11aed6c8217619f25a7cb4963c71 111 Gene3D G3DSA:1.10.10.370 42 110 2.9E-26 T 29-03-2018 Y880_RS10455 af2c11aed6c8217619f25a7cb4963c71 111 Gene3D G3DSA:3.30.1420.10 4 41 4.0E-15 T 29-03-2018 Y880_RS10455 af2c11aed6c8217619f25a7cb4963c71 111 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 5 111 6.7E-43 T 29-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE Y880_RS09180 3e07f7a4078a9fabab8089875016bf61 165 Pfam PF05638 Type VI secretion system effector, Hcp 11 138 5.3E-29 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp Y880_RS09180 3e07f7a4078a9fabab8089875016bf61 165 Gene3D G3DSA:2.30.110.20 3 164 1.6E-45 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp Y880_RS09180 3e07f7a4078a9fabab8089875016bf61 165 SUPERFAMILY SSF141452 10 162 4.05E-42 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp Y880_RS15410 43eb5ff7282b31e2f5972b53197866c1 157 SMART SM00347 32 133 8.1E-18 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS15410 43eb5ff7282b31e2f5972b53197866c1 157 SUPERFAMILY SSF46785 6 146 2.42E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15410 43eb5ff7282b31e2f5972b53197866c1 157 Pfam PF01047 MarR family 40 97 1.8E-16 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS15410 43eb5ff7282b31e2f5972b53197866c1 157 Gene3D G3DSA:1.10.10.10 4 147 3.3E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15410 43eb5ff7282b31e2f5972b53197866c1 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 57 73 2.6E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS15410 43eb5ff7282b31e2f5972b53197866c1 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 2.6E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS15410 43eb5ff7282b31e2f5972b53197866c1 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 2.6E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS03885 98af7dbc202cad146dc46f9bf66b8a88 494 Pfam PF13692 Glycosyl transferases group 1 305 439 7.2E-14 T 29-03-2018 Y880_RS03885 98af7dbc202cad146dc46f9bf66b8a88 494 SUPERFAMILY SSF53756 123 467 3.51E-38 T 29-03-2018 Y880_RS03885 98af7dbc202cad146dc46f9bf66b8a88 494 Gene3D G3DSA:3.40.50.2000 294 460 1.2E-26 T 29-03-2018 Y880_RS24915 74b6847b6ad76a43e62e20cf63810008 248 SMART SM00850 148 246 8.0E-25 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Y880_RS24915 74b6847b6ad76a43e62e20cf63810008 248 Pfam PF04397 LytTr DNA-binding domain 149 245 3.4E-21 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Y880_RS24915 74b6847b6ad76a43e62e20cf63810008 248 Pfam PF00072 Response regulator receiver domain 3 113 4.4E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS24915 74b6847b6ad76a43e62e20cf63810008 248 SUPERFAMILY SSF52172 1 122 9.11E-34 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS24915 74b6847b6ad76a43e62e20cf63810008 248 SMART SM00448 1 113 6.8E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS24915 74b6847b6ad76a43e62e20cf63810008 248 Gene3D G3DSA:2.40.50.40 138 206 1.0E-10 T 29-03-2018 Y880_RS24915 74b6847b6ad76a43e62e20cf63810008 248 Gene3D G3DSA:3.40.50.2300 1 131 1.7E-33 T 29-03-2018 Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 Gene3D G3DSA:2.40.50.140 1 69 4.6E-27 T 29-03-2018 Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 PIRSF PIRSF002599 1 69 1.4E-22 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 SMART SM00357 6 69 2.3E-26 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 SUPERFAMILY SSF50249 4 67 3.81E-24 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 29-03-2018 IPR019844 Cold-shock conserved site Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 PRINTS PR00050 Cold shock protein signature 27 36 4.3E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 PRINTS PR00050 Cold shock protein signature 42 60 4.3E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 PRINTS PR00050 Cold shock protein signature 7 22 4.3E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS02675 25b3f7c5ef66f67e18093a542955f7de 69 Pfam PF00313 'Cold-shock' DNA-binding domain 7 68 1.3E-27 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 134 153 4.0E-7 T 29-03-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 178 194 4.0E-7 T 29-03-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 243 257 4.0E-7 T 29-03-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 157 171 4.0E-7 T 29-03-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 Gene3D G3DSA:1.20.120.380 245 320 2.7E-20 T 29-03-2018 IPR027362 DNA topoisomerase I catalytic fragment, domain 2 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 94 268 6.4E-28 T 29-03-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 Gene3D G3DSA:3.90.15.10 93 238 3.5E-38 T 29-03-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 SUPERFAMILY SSF56349 90 306 1.63E-67 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 Gene3D G3DSA:3.30.66.10 27 92 4.6E-35 T 29-03-2018 IPR035447 DNA topoisomerase I, N-terminal Y880_RS08555 9ef65207394e3cf3c2f863ca53cf83e9 333 SUPERFAMILY SSF55869 34 95 3.14E-23 T 29-03-2018 IPR035447 DNA topoisomerase I, N-terminal Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 67 167 3.7E-42 T 29-03-2018 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 PRINTS PR01021 OMPA domain signature 69 91 1.3E-20 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 PRINTS PR01021 OMPA domain signature 98 113 1.3E-20 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 PRINTS PR01021 OMPA domain signature 113 129 1.3E-20 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 Gene3D G3DSA:3.30.1330.60 48 167 6.1E-35 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 Pfam PF00691 OmpA family 68 162 3.6E-25 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 ProSitePatterns PS01068 OmpA-like domain. 100 144 - T 29-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Y880_RS01675 6f5cb405bc7be79abd6ae63dedbb4567 168 SUPERFAMILY SSF103088 60 166 3.92E-35 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS23875 6a593f91dcc483f7a9f0bd6c6838bbd3 256 SUPERFAMILY SSF53335 18 253 2.79E-52 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS23875 6a593f91dcc483f7a9f0bd6c6838bbd3 256 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 41 56 - T 29-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Y880_RS23875 6a593f91dcc483f7a9f0bd6c6838bbd3 256 Gene3D G3DSA:3.40.50.150 12 255 2.4E-48 T 29-03-2018 Y880_RS23875 6a593f91dcc483f7a9f0bd6c6838bbd3 256 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 163 177 - T 29-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Y880_RS23875 6a593f91dcc483f7a9f0bd6c6838bbd3 256 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 21 255 39.028 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Y880_RS23875 6a593f91dcc483f7a9f0bd6c6838bbd3 256 Pfam PF01209 ubiE/COQ5 methyltransferase family 25 255 5.9E-99 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Y880_RS23875 6a593f91dcc483f7a9f0bd6c6838bbd3 256 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 30 255 2.4E-84 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Y880_RS08440 5bc5a9cc290bf27c4f8c590fdaf3ead4 288 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 27 224 7.0E-40 T 29-03-2018 IPR008775 Phytanoyl-CoA dioxygenase Y880_RS08440 5bc5a9cc290bf27c4f8c590fdaf3ead4 288 SUPERFAMILY SSF51197 28 268 6.13E-43 T 29-03-2018 Y880_RS08440 5bc5a9cc290bf27c4f8c590fdaf3ead4 288 Gene3D G3DSA:2.60.120.620 15 239 1.8E-28 T 29-03-2018 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 Gene3D G3DSA:2.40.50.140 15 151 6.7E-31 T 29-03-2018 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 Pfam PF01336 OB-fold nucleic acid binding domain 69 142 2.9E-7 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 500 43.703 T 29-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 16 500 3.6E-202 T 29-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 SUPERFAMILY SSF50249 13 151 1.05E-35 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 Gene3D G3DSA:3.30.930.10 152 497 1.3E-104 T 29-03-2018 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 SUPERFAMILY SSF55681 158 498 1.55E-123 T 29-03-2018 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 Pfam PF00152 tRNA synthetases class II (D, K and N) 159 497 1.7E-83 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 258 275 1.6E-37 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 240 253 1.6E-37 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 211 227 1.6E-37 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 195 205 1.6E-37 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS16655 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 382 398 1.6E-37 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y880_RS03990 a7c4885771b8e760a5effa98dc4fe763 530 SUPERFAMILY SSF52540 6 132 1.69E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03990 a7c4885771b8e760a5effa98dc4fe763 530 SUPERFAMILY SSF52540 216 513 1.69E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03990 a7c4885771b8e760a5effa98dc4fe763 530 Gene3D G3DSA:3.40.50.300 344 525 5.1E-15 T 29-03-2018 Y880_RS03990 a7c4885771b8e760a5effa98dc4fe763 530 Gene3D G3DSA:3.40.50.300 2 335 3.1E-36 T 29-03-2018 Y880_RS03990 a7c4885771b8e760a5effa98dc4fe763 530 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 329 1.0E-24 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y880_RS23865 b5e83c517d53f17f1fcfc70f9a0440e1 138 Gene3D G3DSA:1.20.120.20 6 136 6.4E-5 T 29-03-2018 Y880_RS23865 b5e83c517d53f17f1fcfc70f9a0440e1 138 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 13 135 1.7E-46 T 29-03-2018 IPR008769 Poly granule associated Y880_RS23865 b5e83c517d53f17f1fcfc70f9a0440e1 138 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 21 136 2.2E-42 T 29-03-2018 IPR008769 Poly granule associated Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Gene3D G3DSA:3.30.230.10 500 622 1.7E-41 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Gene3D G3DSA:3.40.50.300 2 294 6.8E-58 T 29-03-2018 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Gene3D G3DSA:3.30.70.870 408 499 3.6E-39 T 29-03-2018 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Pfam PF03144 Elongation factor Tu domain 2 332 399 7.9E-17 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 SUPERFAMILY SSF54980 412 489 5.04E-25 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 188 5.7E-35 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Gene3D G3DSA:3.30.70.240 623 700 3.2E-30 T 29-03-2018 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 SUPERFAMILY SSF50447 272 412 3.31E-35 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 SMART SM00889 488 607 1.2E-69 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 SMART SM00838 609 696 3.3E-56 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 SUPERFAMILY SSF54980 612 697 1.77E-28 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Pfam PF00679 Elongation factor G C-terminus 609 694 2.0E-30 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 PRINTS PR00315 GTP-binding elongation factor signature 86 96 1.6E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.6E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.6E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 PRINTS PR00315 GTP-binding elongation factor signature 102 113 1.6E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 PRINTS PR00315 GTP-binding elongation factor signature 138 147 1.6E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Gene3D G3DSA:2.40.30.10 295 407 2.9E-32 T 29-03-2018 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 109.338 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 700 0.0 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Pfam PF14492 Elongation Factor G, domain II 412 486 6.4E-35 T 29-03-2018 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Pfam PF00009 Elongation factor Tu GTP binding domain 10 288 2.6E-62 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 SUPERFAMILY SSF54211 487 607 6.57E-42 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 Pfam PF03764 Elongation factor G, domain IV 487 605 4.5E-44 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y880_RS07530 047d6ef89ad010567fbdfd7442b6ea60 702 SUPERFAMILY SSF52540 6 288 1.63E-103 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24880 bb7aa2146ba547ddfb52fa082a41a253 209 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 127 206 3.2E-18 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y880_RS24880 bb7aa2146ba547ddfb52fa082a41a253 209 Gene3D G3DSA:3.10.50.40 96 209 1.4E-28 T 29-03-2018 Y880_RS24880 bb7aa2146ba547ddfb52fa082a41a253 209 SUPERFAMILY SSF54534 22 208 3.93E-37 T 29-03-2018 Y880_RS24880 bb7aa2146ba547ddfb52fa082a41a253 209 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 22 109 7.0E-6 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y880_RS24880 bb7aa2146ba547ddfb52fa082a41a253 209 Gene3D G3DSA:1.10.287.460 18 95 2.5E-7 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y880_RS05410 193f1ef1a21c341bcfa0f6313ea233ba 242 SMART SM00332 4 240 9.7E-29 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS05410 193f1ef1a21c341bcfa0f6313ea233ba 242 Gene3D G3DSA:3.60.40.10 1 241 5.8E-42 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS05410 193f1ef1a21c341bcfa0f6313ea233ba 242 Pfam PF13672 Protein phosphatase 2C 18 202 3.9E-15 T 29-03-2018 Y880_RS05410 193f1ef1a21c341bcfa0f6313ea233ba 242 SMART SM00331 13 242 3.1E-27 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS05410 193f1ef1a21c341bcfa0f6313ea233ba 242 SUPERFAMILY SSF81606 7 241 2.75E-60 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS27080 2ae6417fec8fb0f69d35c6238c5afc99 144 Pfam PF08786 DcrB 8 136 1.6E-34 T 29-03-2018 IPR014894 Protein DcrB Y880_RS27080 2ae6417fec8fb0f69d35c6238c5afc99 144 Gene3D G3DSA:3.40.1000.10 1 144 7.1E-24 T 29-03-2018 Y880_RS27080 2ae6417fec8fb0f69d35c6238c5afc99 144 SUPERFAMILY SSF55724 2 141 2.14E-47 T 29-03-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Reactome: R-HSA-5576892 Y880_RS07755 f7a01745134213b43c6615601759800f 423 Pfam PF07690 Major Facilitator Superfamily 35 289 6.0E-31 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS07755 f7a01745134213b43c6615601759800f 423 ProSitePatterns PS00217 Sugar transport proteins signature 2. 124 149 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS07755 f7a01745134213b43c6615601759800f 423 Gene3D G3DSA:1.20.1250.20 18 216 1.2E-34 T 29-03-2018 Y880_RS07755 f7a01745134213b43c6615601759800f 423 SUPERFAMILY SSF103473 20 422 3.01E-73 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS07755 f7a01745134213b43c6615601759800f 423 Gene3D G3DSA:1.20.1250.20 217 423 3.9E-25 T 29-03-2018 Y880_RS18425 a89309fbfa17f5eca6a8be3d45df0087 308 SMART SM00382 26 210 4.5E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS18425 a89309fbfa17f5eca6a8be3d45df0087 308 SUPERFAMILY SSF52540 2 224 1.85E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS18425 a89309fbfa17f5eca6a8be3d45df0087 308 Gene3D G3DSA:3.40.50.300 1 256 1.2E-60 T 29-03-2018 Y880_RS18425 a89309fbfa17f5eca6a8be3d45df0087 308 Pfam PF00005 ABC transporter 18 160 4.7E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS08680 a02bd03a9bbfd525a804f66b97ac19c3 356 Gene3D G3DSA:3.30.70.100 246 338 1.2E-21 T 29-03-2018 Y880_RS08680 a02bd03a9bbfd525a804f66b97ac19c3 356 Pfam PF00117 Glutamine amidotransferase class-I 31 215 6.6E-10 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS08680 a02bd03a9bbfd525a804f66b97ac19c3 356 Gene3D G3DSA:3.40.50.880 5 240 9.8E-33 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS08680 a02bd03a9bbfd525a804f66b97ac19c3 356 SUPERFAMILY SSF54909 245 344 6.34E-30 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS08680 a02bd03a9bbfd525a804f66b97ac19c3 356 SUPERFAMILY SSF52317 9 238 2.75E-43 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS08680 a02bd03a9bbfd525a804f66b97ac19c3 356 Pfam PF03992 Antibiotic biosynthesis monooxygenase 257 321 2.3E-7 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS19070 6440f6fa77379d524e4d0cf81d8c6f85 569 Gene3D G3DSA:3.90.1300.10 1 569 1.2E-119 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS19070 6440f6fa77379d524e4d0cf81d8c6f85 569 Pfam PF01425 Amidase 25 291 5.5E-45 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS19070 6440f6fa77379d524e4d0cf81d8c6f85 569 Pfam PF01425 Amidase 459 544 4.4E-6 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS19070 6440f6fa77379d524e4d0cf81d8c6f85 569 SUPERFAMILY SSF75304 1 561 2.35E-89 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS29685 2e738c2444fe11b4fc1e8daab418825e 930 Gene3D G3DSA:2.60.450.10 150 305 3.8E-17 T 29-03-2018 Y880_RS29685 2e738c2444fe11b4fc1e8daab418825e 930 Pfam PF03968 OstA-like protein 158 291 6.4E-11 T 29-03-2018 IPR005653 Organic solvent tolerance-like, N-terminal Y880_RS29685 2e738c2444fe11b4fc1e8daab418825e 930 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 20 905 21.639 T 29-03-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 Y880_RS29685 2e738c2444fe11b4fc1e8daab418825e 930 Pfam PF04453 Organic solvent tolerance protein 403 837 2.0E-119 T 29-03-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 PIRSF PIRSF000429 1 401 4.8E-136 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 401 8.3E-224 T 29-03-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 SUPERFAMILY SSF53901 277 400 3.12E-45 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 Gene3D G3DSA:3.40.47.10 1 278 4.8E-58 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 SUPERFAMILY SSF53901 4 276 4.51E-88 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 Pfam PF00108 Thiolase, N-terminal domain 5 268 4.7E-79 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 399 1.0E-138 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 Gene3D G3DSA:3.40.47.10 279 398 2.1E-32 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS27740 9cec82d316b7c22b870c24f522b83ed0 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 6.9E-43 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS20455 58e0e807954272da9903afe6d817e2ac 403 PIRSF PIRSF038885 1 403 6.7E-161 T 29-03-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 Y880_RS20455 58e0e807954272da9903afe6d817e2ac 403 SUPERFAMILY SSF81648 281 396 5.01E-33 T 29-03-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Y880_RS20455 58e0e807954272da9903afe6d817e2ac 403 SUPERFAMILY SSF81342 13 279 1.27E-96 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y880_RS20455 58e0e807954272da9903afe6d817e2ac 403 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 278 379 1.3E-43 T 29-03-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Y880_RS20455 58e0e807954272da9903afe6d817e2ac 403 Gene3D G3DSA:1.20.810.10 6 400 8.7E-164 T 29-03-2018 IPR027387 Cytochrome b/b6-like domain Reactome: R-HSA-611105 Y880_RS20455 58e0e807954272da9903afe6d817e2ac 403 Pfam PF00033 Cytochrome b/b6/petB 24 211 8.7E-68 T 29-03-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 4.8E-64 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 2.2E-47 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 2.2E-47 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 2.2E-47 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 2.2E-47 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 2.2E-47 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 2.2E-47 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 50.552 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 315 3.0E-157 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 Gene3D G3DSA:3.90.226.10 1 275 1.4E-65 T 29-03-2018 Y880_RS16350 d4e293f898d696d6f7b19c040ecdcd6d 316 SUPERFAMILY SSF52096 5 314 4.42E-104 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS21275 282d6dadfec29fe4fb672ca5068162a7 346 SUPERFAMILY SSF46626 30 189 1.65E-51 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21275 282d6dadfec29fe4fb672ca5068162a7 346 PIRSF PIRSF000294 1 346 6.9E-159 T 29-03-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 Y880_RS21275 282d6dadfec29fe4fb672ca5068162a7 346 SUPERFAMILY SSF46626 188 344 7.28E-44 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21275 282d6dadfec29fe4fb672ca5068162a7 346 Pfam PF03150 Di-haem cytochrome c peroxidase 53 201 5.4E-51 T 29-03-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 Y880_RS21275 282d6dadfec29fe4fb672ca5068162a7 346 Pfam PF00034 Cytochrome c 209 322 9.2E-10 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21275 282d6dadfec29fe4fb672ca5068162a7 346 Gene3D G3DSA:1.10.760.10 205 332 3.6E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21275 282d6dadfec29fe4fb672ca5068162a7 346 Gene3D G3DSA:1.10.760.10 42 204 9.1E-46 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 Pfam PF00691 OmpA family 244 339 2.0E-24 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 SUPERFAMILY SSF103647 198 232 4.84E-7 T 29-03-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 SUPERFAMILY SSF56925 45 188 6.54E-17 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 ProSitePatterns PS01068 OmpA-like domain. 276 321 - T 29-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 PRINTS PR01021 OMPA domain signature 244 266 7.4E-18 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 PRINTS PR01021 OMPA domain signature 289 305 7.4E-18 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 PRINTS PR01021 OMPA domain signature 274 289 7.4E-18 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 Gene3D G3DSA:2.40.160.20 13 195 1.5E-22 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 SUPERFAMILY SSF103088 235 345 3.27E-39 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 Gene3D G3DSA:3.30.1330.60 196 350 5.7E-44 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS05975 171eacef143b342c9f2b7bca29db9fc0 350 Pfam PF05736 OprF membrane domain 1 188 2.2E-97 T 29-03-2018 IPR008722 Outer membrane porin F, N-terminal Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 Gene3D G3DSA:3.20.20.70 41 316 3.8E-47 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 PIRSF PIRSF029570 5 948 0.0 T 29-03-2018 IPR016925 Uncharacterised conserved protein UCP029570 Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 SUPERFAMILY SSF51445 52 305 7.16E-36 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 SUPERFAMILY SSF88713 570 787 1.31E-6 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 Pfam PF03537 Glycoside-hydrolase family GH114 72 292 1.9E-16 T 29-03-2018 IPR004352 Glycoside-hydrolase family GH114, TIM-barrel domain Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 Gene3D G3DSA:3.20.20.370 504 792 4.9E-12 T 29-03-2018 Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 253 263 1.8E-6 T 29-03-2018 IPR016062 Hypothetical protein TM1410-related Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 275 287 1.8E-6 T 29-03-2018 IPR016062 Hypothetical protein TM1410-related Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 147 166 1.8E-6 T 29-03-2018 IPR016062 Hypothetical protein TM1410-related Y880_RS13335 9764990b74d2e8f06ad1bd1725a96a02 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 90 109 1.8E-6 T 29-03-2018 IPR016062 Hypothetical protein TM1410-related Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 Gene3D G3DSA:3.40.50.720 147 244 1.3E-16 T 29-03-2018 Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 Gene3D G3DSA:3.90.180.10 245 317 3.9E-5 T 29-03-2018 Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 Gene3D G3DSA:3.90.180.10 2 146 1.9E-42 T 29-03-2018 Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 SUPERFAMILY SSF50129 11 136 8.33E-37 T 29-03-2018 IPR011032 GroES-like Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 SMART SM00829 9 313 6.9E-42 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 SUPERFAMILY SSF51735 106 277 6.04E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 8 314 6.2E-118 T 29-03-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 Pfam PF00107 Zinc-binding dehydrogenase 146 260 7.3E-19 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS14305 b6150b97c2e6b4dd4ef4c5287797e480 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 82 1.1E-6 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 SUPERFAMILY SSF52518 5 320 7.23E-122 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 333 9.1E-166 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 663 0.0 T 29-03-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 Gene3D G3DSA:3.40.50.920 541 662 4.0E-28 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 Pfam PF02780 Transketolase, C-terminal domain 540 655 8.4E-16 T 29-03-2018 IPR033248 Transketolase, C-terminal domain Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 SUPERFAMILY SSF52518 347 526 1.01E-67 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 SMART SM00861 354 525 1.3E-69 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 29-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 Pfam PF02779 Transketolase, pyrimidine binding domain 353 525 1.3E-45 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 SUPERFAMILY SSF52922 533 664 1.83E-42 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 Gene3D G3DSA:3.40.50.970 364 540 1.2E-42 T 29-03-2018 Y880_RS29440 53a9e3fefd9bd056e9051ff59be6a7d9 665 Gene3D G3DSA:3.40.50.970 1 363 1.5E-126 T 29-03-2018 Y880_RS08005 b276691762de37beffce17b7a56b97bc 312 SUPERFAMILY SSF117396 6 135 1.06E-79 T 29-03-2018 IPR002763 Protein of unknown function DUF72 Y880_RS08005 b276691762de37beffce17b7a56b97bc 312 SUPERFAMILY SSF117396 163 291 1.06E-79 T 29-03-2018 IPR002763 Protein of unknown function DUF72 Y880_RS08005 b276691762de37beffce17b7a56b97bc 312 Gene3D G3DSA:3.20.20.410 1 299 2.5E-91 T 29-03-2018 IPR002763 Protein of unknown function DUF72 Y880_RS08005 b276691762de37beffce17b7a56b97bc 312 Pfam PF01904 Protein of unknown function DUF72 24 288 2.6E-67 T 29-03-2018 IPR002763 Protein of unknown function DUF72 Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 SMART SM00448 11 122 6.9E-44 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 SMART SM00862 161 238 1.2E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 Pfam PF00486 Transcriptional regulatory protein, C terminal 166 238 3.5E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 Gene3D G3DSA:3.40.50.2300 2 132 8.6E-40 T 29-03-2018 Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 Gene3D G3DSA:1.10.10.10 134 245 3.2E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 SUPERFAMILY SSF52172 7 132 8.25E-43 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 SUPERFAMILY SSF46894 140 240 6.52E-26 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS24600 9ea9dc4796be49889408ed925fba373f 247 Pfam PF00072 Response regulator receiver domain 13 123 3.8E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 Pfam PF00072 Response regulator receiver domain 11 125 3.7E-13 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 SUPERFAMILY SSF52172 9 131 9.68E-19 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 Gene3D G3DSA:3.40.50.2300 2 152 1.3E-20 T 29-03-2018 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 SMART SM00421 151 208 1.2E-21 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 Gene3D G3DSA:1.10.10.10 153 213 3.3E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 2.8E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 SUPERFAMILY SSF46894 146 212 4.76E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 SMART SM00448 9 125 2.2E-12 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.8E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.8E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS09230 a8d627a72c9e735486ecd5fdf6cd994e 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.8E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12000 7e1a7f30d787c1915257999f23bd2e76 500 Gene3D G3DSA:1.20.1600.10 39 493 8.3E-99 T 29-03-2018 Y880_RS12000 7e1a7f30d787c1915257999f23bd2e76 500 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 31 487 2.9E-136 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS12000 7e1a7f30d787c1915257999f23bd2e76 500 Pfam PF02321 Outer membrane efflux protein 84 276 1.4E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS12000 7e1a7f30d787c1915257999f23bd2e76 500 Pfam PF02321 Outer membrane efflux protein 309 467 2.2E-24 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS12000 7e1a7f30d787c1915257999f23bd2e76 500 SUPERFAMILY SSF56954 21 489 7.46E-107 T 29-03-2018 Y880_RS22465 24c2c5ed5a8a9de2a62210e1d6f86aa7 311 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 36 151 5.5E-17 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y880_RS22465 24c2c5ed5a8a9de2a62210e1d6f86aa7 311 Gene3D G3DSA:3.20.20.190 19 308 5.1E-45 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS22465 24c2c5ed5a8a9de2a62210e1d6f86aa7 311 SUPERFAMILY SSF51695 29 297 2.43E-45 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS15285 7793a0e52a79c28d57d6fb190949bafd 150 PRINTS PR00369 Flavodoxin signature 108 127 2.9E-5 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y880_RS15285 7793a0e52a79c28d57d6fb190949bafd 150 PRINTS PR00369 Flavodoxin signature 52 63 2.9E-5 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y880_RS15285 7793a0e52a79c28d57d6fb190949bafd 150 PRINTS PR00369 Flavodoxin signature 83 93 2.9E-5 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y880_RS15285 7793a0e52a79c28d57d6fb190949bafd 150 PRINTS PR00369 Flavodoxin signature 4 17 2.9E-5 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y880_RS15285 7793a0e52a79c28d57d6fb190949bafd 150 Gene3D G3DSA:3.40.50.360 1 150 3.1E-29 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS15285 7793a0e52a79c28d57d6fb190949bafd 150 Pfam PF00258 Flavodoxin 5 140 7.9E-20 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Y880_RS15285 7793a0e52a79c28d57d6fb190949bafd 150 SUPERFAMILY SSF52218 1 148 7.04E-36 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF56059 128 401 1.94E-109 T 29-03-2018 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF48108 396 554 6.28E-53 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.40.50.20 4 110 3.0E-38 T 29-03-2018 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF52335 938 1069 1.01E-39 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 8.7E-41 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.30.1490.20 655 743 1.5E-24 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.40.50.1380 927 1054 3.0E-35 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02142 MGS-like domain 958 1041 2.2E-19 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF52440 557 675 2.3E-49 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SMART SM01096 424 547 6.4E-75 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SMART SM00851 955 1041 2.7E-32 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF52440 1 127 2.01E-49 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:1.10.1030.10 404 538 4.7E-53 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 4.0E-66 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 4.0E-66 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 4.0E-66 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 4.0E-66 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 4.0E-66 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 4.0E-66 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 4.0E-66 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.126 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.40.50.20 539 654 3.0E-62 T 29-03-2018 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 875 1.0E-32 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.4E-72 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.405 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.30.470.20 744 926 5.5E-42 T 29-03-2018 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF56059 673 933 6.72E-102 T 29-03-2018 Y880_RS22275 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.30.470.20 119 403 2.4E-66 T 29-03-2018 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 3.8E-24 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 3.8E-24 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 3.8E-24 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 3.8E-24 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 3.8E-24 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 SUPERFAMILY SSF47928 3 105 4.84E-25 T 29-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 176 3.9E-49 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 Gene3D G3DSA:1.10.520.20 2 107 1.3E-32 T 29-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 19.687 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26510 94409f5629df26021006a6f972a216d7 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 3.7E-56 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS23680 c69e112c281014cbd34053bc42e25c06 425 PIRSF PIRSF001434 1 424 1.7E-135 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS23680 c69e112c281014cbd34053bc42e25c06 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS23680 c69e112c281014cbd34053bc42e25c06 425 Gene3D G3DSA:3.40.640.10 1 287 1.9E-66 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS23680 c69e112c281014cbd34053bc42e25c06 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 2 421 1.0E-207 T 29-03-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 Y880_RS23680 c69e112c281014cbd34053bc42e25c06 425 SUPERFAMILY SSF53383 1 421 4.47E-134 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS23680 c69e112c281014cbd34053bc42e25c06 425 Gene3D G3DSA:3.90.1150.10 289 425 9.1E-51 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS23680 c69e112c281014cbd34053bc42e25c06 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 420 1.4E-143 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y880_RS10020 6ef5b06f2fc54dc400a4cf815cff3712 374 Gene3D G3DSA:3.90.1150.10 281 366 3.6E-11 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS10020 6ef5b06f2fc54dc400a4cf815cff3712 374 Pfam PF00155 Aminotransferase class I and II 63 358 6.9E-38 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS10020 6ef5b06f2fc54dc400a4cf815cff3712 374 Gene3D G3DSA:3.40.640.10 71 280 9.5E-37 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS10020 6ef5b06f2fc54dc400a4cf815cff3712 374 SUPERFAMILY SSF53383 42 363 9.0E-62 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS01010 d3a7cf42730f514d1c6abac8bf6308f3 389 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 26 207 2.2E-45 T 29-03-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal Y880_RS01010 d3a7cf42730f514d1c6abac8bf6308f3 389 Gene3D G3DSA:2.70.50.50 26 210 1.3E-62 T 29-03-2018 Y880_RS01010 d3a7cf42730f514d1c6abac8bf6308f3 389 Gene3D G3DSA:2.10.10.20 337 389 9.7E-4 T 29-03-2018 Y880_RS01010 d3a7cf42730f514d1c6abac8bf6308f3 389 SUPERFAMILY SSF81296 26 210 1.01E-54 T 29-03-2018 IPR014756 Immunoglobulin E-set Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 Gene3D G3DSA:3.50.50.60 1 337 3.1E-34 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 Pfam PF01494 FAD binding domain 2 306 5.7E-21 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 2.6E-21 T 29-03-2018 Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 273 288 2.6E-21 T 29-03-2018 Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 2.6E-21 T 29-03-2018 Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 288 304 2.6E-21 T 29-03-2018 Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 SUPERFAMILY SSF51905 2 164 1.63E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10345 8e21efc03347c744015e218e64c6d5e4 382 SUPERFAMILY SSF51905 260 362 1.63E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07200 fcd657bf7d432541b6152e74b1ea2440 432 Gene3D G3DSA:2.60.120.10 196 242 1.2E-8 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS07200 fcd657bf7d432541b6152e74b1ea2440 432 Gene3D G3DSA:2.60.120.10 275 397 1.0E-54 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS07200 fcd657bf7d432541b6152e74b1ea2440 432 SUPERFAMILY SSF51182 8 431 7.56E-160 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS07200 fcd657bf7d432541b6152e74b1ea2440 432 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 8 426 3.6E-196 T 29-03-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 Y880_RS07200 fcd657bf7d432541b6152e74b1ea2440 432 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 9 429 71.026 T 29-03-2018 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5 Y880_RS07200 fcd657bf7d432541b6152e74b1ea2440 432 Pfam PF04209 homogentisate 1,2-dioxygenase 9 427 5.3E-213 T 29-03-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 Y880_RS03295 4795258352016a10ad4c194a84ed2196 194 SUPERFAMILY SSF53254 2 188 1.2E-47 T 29-03-2018 IPR029033 Histidine phosphatase superfamily Y880_RS03295 4795258352016a10ad4c194a84ed2196 194 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 184 2.4E-42 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y880_RS03295 4795258352016a10ad4c194a84ed2196 194 Gene3D G3DSA:3.40.50.1240 1 194 7.9E-42 T 29-03-2018 IPR029033 Histidine phosphatase superfamily Y880_RS03295 4795258352016a10ad4c194a84ed2196 194 SMART SM00855 4 153 6.4E-15 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 PRINTS PR00969 Pili chaperone signature 30 39 2.6E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 PRINTS PR00969 Pili chaperone signature 79 100 2.6E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 PRINTS PR00969 Pili chaperone signature 131 146 2.6E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 PRINTS PR00969 Pili chaperone signature 107 124 2.6E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 PRINTS PR00969 Pili chaperone signature 172 187 2.6E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 SUPERFAMILY SSF49584 151 241 2.62E-17 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 177 240 2.9E-21 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 150 5.1E-41 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 106 123 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 SUPERFAMILY SSF49354 25 149 2.06E-39 T 29-03-2018 IPR008962 PapD-like Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 Gene3D G3DSA:2.60.40.10 29 150 5.5E-37 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS18670 9a4dda8bd4999e56f9e0efbf4b25d0e6 248 Gene3D G3DSA:2.60.40.10 151 248 1.0E-28 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS22715 2eac24a92ca41adcd33518a15e95d470 178 SUPERFAMILY SSF55811 19 177 1.21E-34 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS22715 2eac24a92ca41adcd33518a15e95d470 178 Pfam PF00293 NUDIX domain 47 156 3.1E-16 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS22715 2eac24a92ca41adcd33518a15e95d470 178 PIRSF PIRSF017340 10 178 4.9E-77 T 29-03-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 Y880_RS22715 2eac24a92ca41adcd33518a15e95d470 178 Gene3D G3DSA:3.90.79.10 10 178 1.7E-31 T 29-03-2018 Y880_RS15825 ede6afefcafed17b94093df1309595b7 389 Gene3D G3DSA:2.40.50.100 198 281 1.0E-7 T 29-03-2018 Y880_RS15825 ede6afefcafed17b94093df1309595b7 389 Pfam PF07238 PilZ domain 16 115 2.1E-11 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS15825 ede6afefcafed17b94093df1309595b7 389 Gene3D G3DSA:2.40.10.220 9 122 1.1E-15 T 29-03-2018 Y880_RS15825 ede6afefcafed17b94093df1309595b7 389 Gene3D G3DSA:2.40.50.100 282 359 0.0019 T 29-03-2018 Y880_RS15825 ede6afefcafed17b94093df1309595b7 389 SUPERFAMILY SSF141371 10 124 2.35E-10 T 29-03-2018 Y880_RS15825 ede6afefcafed17b94093df1309595b7 389 Pfam PF13437 HlyD family secretion protein 262 357 2.5E-10 T 29-03-2018 Y880_RS04585 1f7214e621d8236b83c8acaf517347e5 279 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 18 248 7.7E-100 T 29-03-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC Y880_RS04585 1f7214e621d8236b83c8acaf517347e5 279 SUPERFAMILY SSF51735 97 188 3.8E-12 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04585 1f7214e621d8236b83c8acaf517347e5 279 Gene3D G3DSA:3.40.50.720 96 275 1.2E-6 T 29-03-2018 Y880_RS04585 1f7214e621d8236b83c8acaf517347e5 279 Pfam PF02625 XdhC and CoxI family 11 71 3.0E-18 T 29-03-2018 IPR003777 XdhC- CoxI Y880_RS04585 1f7214e621d8236b83c8acaf517347e5 279 Pfam PF13478 XdhC Rossmann domain 106 247 8.6E-38 T 29-03-2018 IPR027051 XdhC Rossmann domain Y880_RS20260 e125440435a4fea631adba9b7284e34a 594 SUPERFAMILY SSF103473 12 220 8.5E-20 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS20260 e125440435a4fea631adba9b7284e34a 594 SUPERFAMILY SSF103473 355 579 8.5E-20 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS20260 e125440435a4fea631adba9b7284e34a 594 TIGRFAM TIGR00901 2A0125: AmpG-like permease 29 534 2.6E-166 T 29-03-2018 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 GO:0016020 Reactome: R-HSA-425397 Y880_RS20260 e125440435a4fea631adba9b7284e34a 594 Gene3D G3DSA:1.20.1250.20 364 594 1.0E-10 T 29-03-2018 Y880_RS20260 e125440435a4fea631adba9b7284e34a 594 Gene3D G3DSA:1.20.1250.20 2 215 4.9E-17 T 29-03-2018 Y880_RS20260 e125440435a4fea631adba9b7284e34a 594 Pfam PF13000 Acetyl-coenzyme A transporter 1 21 107 2.9E-7 T 29-03-2018 IPR024371 Acetyl-coenzyme A transporter 1 GO:0008521|GO:0016021 Reactome: R-HSA-425397 Y880_RS09895 86590bb891f63361d905949bc28225c7 290 Pfam PF03466 LysR substrate binding domain 86 287 2.0E-35 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09895 86590bb891f63361d905949bc28225c7 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.7E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09895 86590bb891f63361d905949bc28225c7 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.7E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09895 86590bb891f63361d905949bc28225c7 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.7E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09895 86590bb891f63361d905949bc28225c7 290 SUPERFAMILY SSF46785 1 86 2.64E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09895 86590bb891f63361d905949bc28225c7 290 SUPERFAMILY SSF53850 86 285 1.49E-32 T 29-03-2018 Y880_RS09895 86590bb891f63361d905949bc28225c7 290 Gene3D G3DSA:3.40.190.10 91 174 1.4E-14 T 29-03-2018 Y880_RS09895 86590bb891f63361d905949bc28225c7 290 Gene3D G3DSA:1.10.10.10 1 90 1.7E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09895 86590bb891f63361d905949bc28225c7 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.1E-23 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09895 86590bb891f63361d905949bc28225c7 290 Gene3D G3DSA:3.40.190.10 175 264 5.6E-25 T 29-03-2018 Y880_RS26585 c555a9deef9cb89758ebe9dc5b299734 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 40 4.0E-15 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS26585 c555a9deef9cb89758ebe9dc5b299734 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 4.7E-26 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS26585 c555a9deef9cb89758ebe9dc5b299734 44 Pfam PF00468 Ribosomal protein L34 1 44 2.1E-25 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS26585 c555a9deef9cb89758ebe9dc5b299734 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.452 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS26585 c555a9deef9cb89758ebe9dc5b299734 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 29-03-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS07705 b8ad3ef5e121d7d1379a04a6e07e7f6b 305 Gene3D G3DSA:3.40.50.1100 144 304 2.3E-36 T 29-03-2018 Y880_RS07705 b8ad3ef5e121d7d1379a04a6e07e7f6b 305 Gene3D G3DSA:3.40.50.1100 37 143 1.8E-32 T 29-03-2018 Y880_RS07705 b8ad3ef5e121d7d1379a04a6e07e7f6b 305 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 293 2.6E-64 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS07705 b8ad3ef5e121d7d1379a04a6e07e7f6b 305 SUPERFAMILY SSF53686 1 303 7.46E-80 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS19185 b94932e6c0044e95674850f7fdab4207 212 PIRSF PIRSF010372 1 212 1.1E-82 T 29-03-2018 IPR007396 Transcriptional regulator PAI 2-type Y880_RS19185 b94932e6c0044e95674850f7fdab4207 212 Gene3D G3DSA:2.30.110.10 1 211 1.3E-61 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS19185 b94932e6c0044e95674850f7fdab4207 212 Pfam PF04299 Putative FMN-binding domain 1 168 7.2E-64 T 29-03-2018 IPR007396 Transcriptional regulator PAI 2-type Y880_RS19185 b94932e6c0044e95674850f7fdab4207 212 SUPERFAMILY SSF50475 9 192 6.11E-38 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS11925 48bd6f8289d3df78daa073e50ef63a97 470 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 54 464 7.7E-175 T 29-03-2018 IPR021204 Integrating conjugative element protein, PFL4711 Y880_RS12495 0f7c971057528f90f2a4bb54ab3136e9 250 PIRSF PIRSF036427 5 246 7.4E-70 T 29-03-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 Y880_RS12495 0f7c971057528f90f2a4bb54ab3136e9 250 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 7 239 1.5E-66 T 29-03-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 Y880_RS12495 0f7c971057528f90f2a4bb54ab3136e9 250 Gene3D G3DSA:3.30.950.10 149 225 1.2E-6 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12495 0f7c971057528f90f2a4bb54ab3136e9 250 Gene3D G3DSA:3.40.1010.10 6 148 4.3E-28 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12495 0f7c971057528f90f2a4bb54ab3136e9 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 9 221 9.9E-48 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12495 0f7c971057528f90f2a4bb54ab3136e9 250 SUPERFAMILY SSF53790 2 240 1.83E-49 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS23545 dc7d70883ee570b5af727da28db1df4c 318 Gene3D G3DSA:3.40.50.2000 15 295 2.4E-12 T 29-03-2018 Y880_RS23545 dc7d70883ee570b5af727da28db1df4c 318 Pfam PF13524 Glycosyl transferases group 1 212 287 2.4E-8 T 29-03-2018 Y880_RS23545 dc7d70883ee570b5af727da28db1df4c 318 SUPERFAMILY SSF53756 45 295 1.07E-9 T 29-03-2018 Y880_RS20160 b11ca8332f0dcfae0e22bae4d2d69030 376 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 366 2.0E-79 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS20160 b11ca8332f0dcfae0e22bae4d2d69030 376 SUPERFAMILY SSF111369 60 273 4.05E-45 T 29-03-2018 Y880_RS20160 b11ca8332f0dcfae0e22bae4d2d69030 376 Gene3D G3DSA:2.40.50.100 68 118 7.8E-11 T 29-03-2018 Y880_RS20160 b11ca8332f0dcfae0e22bae4d2d69030 376 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 71 269 1.0E-34 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS20160 b11ca8332f0dcfae0e22bae4d2d69030 376 Gene3D G3DSA:1.10.287.470 119 150 1.6E-9 T 29-03-2018 Y880_RS20160 b11ca8332f0dcfae0e22bae4d2d69030 376 Gene3D G3DSA:2.40.50.100 151 201 6.4E-10 T 29-03-2018 Y880_RS09860 22e885bd87c36e9d6da8485e406439d0 205 Pfam PF10077 Uncharacterized protein conserved in bacteria (DUF2314) 34 96 1.3E-6 T 29-03-2018 IPR018756 Domain of unknown function DUF2314 Y880_RS09860 22e885bd87c36e9d6da8485e406439d0 205 Pfam PF09951 Protein of unknown function (DUF2185) 115 198 3.3E-31 T 29-03-2018 IPR018689 Domain of unknown function DUF2185 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 SUPERFAMILY SSF47384 212 282 4.71E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 Gene3D G3DSA:1.10.287.130 218 337 2.2E-7 T 29-03-2018 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 414 2.9E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 375 2.9E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 389 2.9E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 SMART SM00388 228 286 0.0079 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 SUPERFAMILY SSF55874 292 432 3.14E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 SMART SM00304 175 227 1.4E-5 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 329 433 1.3E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 Gene3D G3DSA:3.30.565.10 338 434 6.9E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18755 4a9d3f7ff637536eb122201277e19b4d 434 SMART SM00387 326 434 1.3E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 Gene3D G3DSA:3.10.290.10 102 144 4.2E-18 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 SUPERFAMILY SSF55174 3 206 4.97E-72 T 29-03-2018 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 Gene3D G3DSA:1.10.1050.10 1 101 9.2E-43 T 29-03-2018 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 SMART SM00363 96 160 1.7E-19 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 1.1E-80 T 29-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 SMART SM01390 3 95 3.3E-52 T 29-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 Pfam PF01479 S4 domain 97 143 1.2E-20 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 29-03-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 Gene3D G3DSA:1.10.1050.10 145 206 2.3E-13 T 29-03-2018 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 35.582 T 29-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y880_RS19455 71795eb63bdb23b8ba831912c0915bac 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 7.5E-34 T 29-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Y880_RS24720 d4ee2d180c1386a1a60933d03857e546 444 Pfam PF00557 Metallopeptidase family M24 184 414 9.6E-65 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS24720 d4ee2d180c1386a1a60933d03857e546 444 Gene3D G3DSA:3.40.350.10 2 165 2.0E-51 T 29-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Y880_RS24720 d4ee2d180c1386a1a60933d03857e546 444 SMART SM01011 4 138 2.6E-69 T 29-03-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Y880_RS24720 d4ee2d180c1386a1a60933d03857e546 444 SUPERFAMILY SSF55920 177 437 3.14E-86 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS24720 d4ee2d180c1386a1a60933d03857e546 444 SUPERFAMILY SSF53092 4 176 1.41E-56 T 29-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal Y880_RS24720 d4ee2d180c1386a1a60933d03857e546 444 Gene3D G3DSA:3.90.230.10 166 444 8.3E-87 T 29-03-2018 Y880_RS24720 d4ee2d180c1386a1a60933d03857e546 444 Pfam PF05195 Aminopeptidase P, N-terminal domain 9 128 1.3E-36 T 29-03-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 214 255 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 Gene3D G3DSA:1.10.10.60 217 267 5.6E-7 T 29-03-2018 Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 SUPERFAMILY SSF51182 32 186 9.78E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 Gene3D G3DSA:2.60.120.10 16 109 9.6E-6 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 Gene3D G3DSA:1.10.10.60 113 216 6.0E-11 T 29-03-2018 Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 SMART SM00342 177 259 4.6E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 Pfam PF12833 Helix-turn-helix domain 183 260 2.3E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS03030 fcd87624cecd2fde25c72e0167dc1e2f 268 SUPERFAMILY SSF46689 216 261 1.57E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS01705 745e14160c1f4e627a9f46ddc574a90d 643 SUPERFAMILY SSF46785 508 634 1.25E-35 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01705 745e14160c1f4e627a9f46ddc574a90d 643 Pfam PF07514 Putative helicase 28 342 3.5E-121 T 29-03-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative Y880_RS01705 745e14160c1f4e627a9f46ddc574a90d 643 Gene3D G3DSA:2.40.10.200 529 633 5.9E-32 T 29-03-2018 Y880_RS01705 745e14160c1f4e627a9f46ddc574a90d 643 Gene3D G3DSA:1.10.3210.10 48 261 4.4E-6 T 29-03-2018 Y880_RS01705 745e14160c1f4e627a9f46ddc574a90d 643 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 28 244 4.6E-90 T 29-03-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class Y880_RS01705 745e14160c1f4e627a9f46ddc574a90d 643 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 511 633 6.3E-39 T 29-03-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal Y880_RS12350 32c0ed00d7eccedb69c54a3ddd3597bd 232 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 5 232 39.575 T 29-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS12350 32c0ed00d7eccedb69c54a3ddd3597bd 232 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 9 227 2.1E-56 T 29-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS12350 32c0ed00d7eccedb69c54a3ddd3597bd 232 SMART SM00934 7 227 1.3E-99 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS12350 32c0ed00d7eccedb69c54a3ddd3597bd 232 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 6 226 1.4E-50 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS12350 32c0ed00d7eccedb69c54a3ddd3597bd 232 Gene3D G3DSA:3.20.20.70 2 232 7.0E-69 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS12350 32c0ed00d7eccedb69c54a3ddd3597bd 232 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 59 72 - T 29-03-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS12350 32c0ed00d7eccedb69c54a3ddd3597bd 232 SUPERFAMILY SSF51366 5 230 2.07E-73 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Y880_RS27645 6d937a67035b504a47626c8584781a4f 76 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 1 73 1.0E-22 T 29-03-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein Y880_RS27645 6d937a67035b504a47626c8584781a4f 76 TIGRFAM TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein 1 72 2.4E-28 T 29-03-2018 IPR009662 Malonate decarboxylase delta subunit Y880_RS27645 6d937a67035b504a47626c8584781a4f 76 Hamap MF_00710 Malonate decarboxylase acyl carrier protein [mdcC]. 1 76 41.506 T 29-03-2018 IPR009662 Malonate decarboxylase delta subunit Y880_RS27645 6d937a67035b504a47626c8584781a4f 76 ProDom PD015450 MALONATE DECARBOXYLASE SUBUNIT DELTA ACYL CARRIER DECARBOXYLASE PLASMID DIRECT SEQUENCING 1 71 8.0E-34 T 29-03-2018 IPR009662 Malonate decarboxylase delta subunit Y880_RS10390 68fba3041c8270a389e7892887443edf 328 Pfam PF09084 NMT1/THI5 like 64 242 5.1E-18 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS10390 68fba3041c8270a389e7892887443edf 328 SMART SM00062 28 240 8.0E-4 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS10390 68fba3041c8270a389e7892887443edf 328 Gene3D G3DSA:3.40.190.10 125 312 9.0E-32 T 29-03-2018 Y880_RS10390 68fba3041c8270a389e7892887443edf 328 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 29 309 2.4E-95 T 29-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y880_RS10390 68fba3041c8270a389e7892887443edf 328 SUPERFAMILY SSF53850 39 254 1.85E-46 T 29-03-2018 Y880_RS10390 68fba3041c8270a389e7892887443edf 328 Gene3D G3DSA:3.40.190.10 23 124 5.7E-13 T 29-03-2018 Y880_RS03795 6633d76ebf1f5d5f33536a6fa8c74f04 157 Pfam PF00583 Acetyltransferase (GNAT) family 56 145 5.3E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS03795 6633d76ebf1f5d5f33536a6fa8c74f04 157 Gene3D G3DSA:3.40.630.30 1 156 3.5E-19 T 29-03-2018 Y880_RS03795 6633d76ebf1f5d5f33536a6fa8c74f04 157 SUPERFAMILY SSF55729 1 150 4.33E-20 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 Gene3D G3DSA:3.30.1490.20 112 174 5.0E-20 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 SUPERFAMILY SSF52440 2 94 2.45E-22 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 Gene3D G3DSA:3.30.470.20 175 360 1.8E-27 T 29-03-2018 Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 SUPERFAMILY SSF56059 97 292 2.65E-56 T 29-03-2018 Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 2 348 5.0E-109 T 29-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 344 39.552 T 29-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 Pfam PF02222 ATP-grasp domain 106 272 9.8E-58 T 29-03-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 SUPERFAMILY SSF51246 297 356 2.35E-13 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y880_RS25775 ca3fb61235cd8e3a79260a410519767a 360 Gene3D G3DSA:3.40.50.20 1 83 3.3E-21 T 29-03-2018 Y880_RS03915 2727e108df55667e493feeae2e305574 540 Gene3D G3DSA:3.40.50.2300 416 540 1.1E-17 T 29-03-2018 Y880_RS03915 2727e108df55667e493feeae2e305574 540 Pfam PF00512 His Kinase A (phospho-acceptor) domain 180 244 2.0E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03915 2727e108df55667e493feeae2e305574 540 SMART SM00387 288 399 5.6E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03915 2727e108df55667e493feeae2e305574 540 SUPERFAMILY SSF47384 163 245 1.04E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03915 2727e108df55667e493feeae2e305574 540 Gene3D G3DSA:1.10.287.130 169 238 8.9E-12 T 29-03-2018 Y880_RS03915 2727e108df55667e493feeae2e305574 540 SMART SM00388 179 244 1.3E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS03915 2727e108df55667e493feeae2e305574 540 SUPERFAMILY SSF52172 417 533 1.57E-15 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS03915 2727e108df55667e493feeae2e305574 540 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 289 394 9.1E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03915 2727e108df55667e493feeae2e305574 540 SMART SM00448 419 526 2.5E-4 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03915 2727e108df55667e493feeae2e305574 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 1.6E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03915 2727e108df55667e493feeae2e305574 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 352 1.6E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03915 2727e108df55667e493feeae2e305574 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 1.6E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS03915 2727e108df55667e493feeae2e305574 540 Pfam PF00072 Response regulator receiver domain 421 526 3.0E-7 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS03915 2727e108df55667e493feeae2e305574 540 Gene3D G3DSA:3.30.565.10 239 398 1.4E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS03915 2727e108df55667e493feeae2e305574 540 SUPERFAMILY SSF55874 234 394 2.62E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS23565 f998d5cd7448d51fa00b4bbe7af16412 585 Pfam PF02543 Carbamoyltransferase N-terminus 5 354 2.7E-57 T 29-03-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 Y880_RS23565 f998d5cd7448d51fa00b4bbe7af16412 585 Pfam PF16861 Carbamoyltransferase C-terminus 408 575 1.9E-61 T 29-03-2018 IPR031730 Carbamoyltransferase, C-terminal Y880_RS23565 f998d5cd7448d51fa00b4bbe7af16412 585 SUPERFAMILY SSF53067 22 83 8.42E-12 T 29-03-2018 Y880_RS23565 f998d5cd7448d51fa00b4bbe7af16412 585 SUPERFAMILY SSF53067 255 359 8.42E-12 T 29-03-2018 Y880_RS23565 f998d5cd7448d51fa00b4bbe7af16412 585 SUPERFAMILY SSF53067 132 218 8.42E-12 T 29-03-2018 Y880_RS23565 f998d5cd7448d51fa00b4bbe7af16412 585 Gene3D G3DSA:3.30.420.40 2 152 4.7E-24 T 29-03-2018 Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 SMART SM00354 11 82 3.2E-25 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 Gene3D G3DSA:3.40.50.2300 67 172 1.2E-29 T 29-03-2018 Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 72 331 9.8E-22 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 Gene3D G3DSA:3.40.50.2300 173 339 9.3E-28 T 29-03-2018 Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 SUPERFAMILY SSF53822 69 330 2.94E-60 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 SUPERFAMILY SSF47413 11 70 9.38E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 Gene3D G3DSA:1.10.10.60 5 24 8.7E-4 T 29-03-2018 Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 Gene3D G3DSA:1.10.260.40 25 66 5.6E-20 T 29-03-2018 Y880_RS08635 7b9c1a37111a52ef0c60403240513154 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 59 1.1E-12 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS12540 a89fee200296106c06de44b03bce5eb1 323 Pfam PF01497 Periplasmic binding protein 54 295 2.5E-24 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 Y880_RS12540 a89fee200296106c06de44b03bce5eb1 323 SUPERFAMILY SSF53807 43 318 1.37E-45 T 29-03-2018 Y880_RS12540 a89fee200296106c06de44b03bce5eb1 323 Gene3D G3DSA:3.40.50.1980 158 322 4.2E-40 T 29-03-2018 Y880_RS12540 a89fee200296106c06de44b03bce5eb1 323 Gene3D G3DSA:3.40.50.1980 19 157 2.3E-21 T 29-03-2018 Y880_RS10835 d1966ccd422bb773e01e1ca8cb31d789 309 Gene3D G3DSA:3.40.190.10 182 268 1.7E-29 T 29-03-2018 Y880_RS10835 d1966ccd422bb773e01e1ca8cb31d789 309 SUPERFAMILY SSF46785 12 117 8.17E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10835 d1966ccd422bb773e01e1ca8cb31d789 309 Gene3D G3DSA:3.40.190.10 97 181 1.0E-16 T 29-03-2018 Y880_RS10835 d1966ccd422bb773e01e1ca8cb31d789 309 Pfam PF03466 LysR substrate binding domain 93 298 1.5E-46 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS10835 d1966ccd422bb773e01e1ca8cb31d789 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 8.2E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS10835 d1966ccd422bb773e01e1ca8cb31d789 309 Gene3D G3DSA:1.10.10.10 6 89 4.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10835 d1966ccd422bb773e01e1ca8cb31d789 309 SUPERFAMILY SSF53850 94 300 3.98E-46 T 29-03-2018 Y880_RS06445 eb42846377795752220f59bc7b7ff3d1 275 Pfam PF04072 Leucine carboxyl methyltransferase 19 175 6.9E-19 T 29-03-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 Y880_RS06445 eb42846377795752220f59bc7b7ff3d1 275 SUPERFAMILY SSF53335 13 249 5.3E-53 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS06445 eb42846377795752220f59bc7b7ff3d1 275 PIRSF PIRSF028177 1 274 6.4E-97 T 29-03-2018 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP GO:0017000|GO:1901106 Y880_RS06445 eb42846377795752220f59bc7b7ff3d1 275 Gene3D G3DSA:3.40.50.150 4 192 1.8E-34 T 29-03-2018 Y880_RS17245 27c568a6a4c043ae8a673f4938cd95c9 66 PIRSF PIRSF039003 3 66 2.1E-33 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y880_RS17245 27c568a6a4c043ae8a673f4938cd95c9 66 SUPERFAMILY SSF140319 2 64 4.18E-25 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y880_RS17245 27c568a6a4c043ae8a673f4938cd95c9 66 Pfam PF04384 Iron-sulphur cluster assembly 3 65 1.8E-30 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y880_RS17245 27c568a6a4c043ae8a673f4938cd95c9 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 5.5E-33 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y880_RS17245 27c568a6a4c043ae8a673f4938cd95c9 66 Gene3D G3DSA:1.10.10.600 2 64 3.0E-31 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 Gene3D G3DSA:2.60.40.10 22 146 1.3E-32 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 PRINTS PR00969 Pili chaperone signature 23 32 2.3E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 PRINTS PR00969 Pili chaperone signature 72 93 2.3E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 PRINTS PR00969 Pili chaperone signature 100 117 2.3E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 PRINTS PR00969 Pili chaperone signature 162 177 2.3E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 PRINTS PR00969 Pili chaperone signature 127 142 2.3E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 Gene3D G3DSA:2.60.40.10 148 237 1.1E-16 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 228 5.5E-12 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 SUPERFAMILY SSF49354 19 145 1.41E-36 T 29-03-2018 IPR008962 PapD-like Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 22 145 3.5E-37 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y880_RS07865 34f991d792553a3e1a4af386d24d3ef1 237 SUPERFAMILY SSF49584 139 231 1.7E-14 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS24405 baa69baf20b157e0fab030e05565b7dc 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 4 288 6.8E-162 T 29-03-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Y880_RS24405 baa69baf20b157e0fab030e05565b7dc 293 Gene3D G3DSA:3.90.550.10 4 292 4.0E-71 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS24405 baa69baf20b157e0fab030e05565b7dc 293 Pfam PF00483 Nucleotidyl transferase 4 240 2.3E-69 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y880_RS24405 baa69baf20b157e0fab030e05565b7dc 293 SUPERFAMILY SSF53448 1 288 1.6E-92 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS24870 221e900e26040134f33aae0e34ca02df 159 Pfam PF09523 Protein of unknown function (DUF2390) 5 110 1.6E-32 T 29-03-2018 IPR012659 Conserved hypothetical protein CHP02444 Y880_RS24870 221e900e26040134f33aae0e34ca02df 159 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 4 113 7.5E-30 T 29-03-2018 IPR012659 Conserved hypothetical protein CHP02444 Y880_RS17355 590bad5ff328f70f2d17b8005a3f9108 307 SUPERFAMILY SSF53474 5 175 5.77E-50 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS17355 590bad5ff328f70f2d17b8005a3f9108 307 SUPERFAMILY SSF53474 217 296 5.77E-50 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS17355 590bad5ff328f70f2d17b8005a3f9108 307 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 12 159 1.5E-14 T 29-03-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 Y880_RS17355 590bad5ff328f70f2d17b8005a3f9108 307 Gene3D G3DSA:3.40.50.1820 2 295 4.5E-41 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06735 f202100e5e43ce17989ac0ea9476e673 515 Gene3D G3DSA:3.20.20.150 57 297 6.0E-4 T 29-03-2018 Y880_RS06735 f202100e5e43ce17989ac0ea9476e673 515 Pfam PF13556 PucR C-terminal helix-turn-helix domain 429 487 1.3E-19 T 29-03-2018 IPR025736 PucR C-terminal helix-turn-helix domain Y880_RS06735 f202100e5e43ce17989ac0ea9476e673 515 Pfam PF07905 Purine catabolism regulatory protein-like family 8 123 1.5E-31 T 29-03-2018 IPR012914 Purine catabolism PurC-like domain Y880_RS06735 f202100e5e43ce17989ac0ea9476e673 515 Gene3D G3DSA:1.10.10.60 400 465 2.3E-6 T 29-03-2018 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 Gene3D G3DSA:1.20.200.10 137 416 3.0E-88 T 29-03-2018 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 PRINTS PR00145 Argininosuccinate lyase family signature 173 193 1.5E-6 T 29-03-2018 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 PRINTS PR00145 Argininosuccinate lyase family signature 315 331 1.5E-6 T 29-03-2018 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 PRINTS PR00145 Argininosuccinate lyase family signature 131 153 1.5E-6 T 29-03-2018 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 458 5.3E-221 T 29-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 Gene3D G3DSA:1.10.275.10 1 136 2.1E-63 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 Pfam PF00206 Lyase 10 340 5.0E-106 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 SUPERFAMILY SSF48557 3 459 5.18E-155 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 Pfam PF10415 Fumarase C C-terminus 406 458 1.5E-26 T 29-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 1.9E-32 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 1.9E-32 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 PRINTS PR00149 Fumarate lyase superfamily signature 132 150 1.9E-32 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 1.9E-32 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 Gene3D G3DSA:1.10.40.30 417 457 9.7E-27 T 29-03-2018 Y880_RS01020 300978fbb17dbc2fa14185dea57ee997 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 2 460 89.565 T 29-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y880_RS27655 6a4dbe8eb612a3f0aa239d384c0915a9 253 Pfam PF06833 Malonate decarboxylase gamma subunit (MdcE) 11 247 8.2E-95 T 29-03-2018 Y880_RS27655 6a4dbe8eb612a3f0aa239d384c0915a9 253 Gene3D G3DSA:3.90.226.10 12 225 5.8E-22 T 29-03-2018 Y880_RS27655 6a4dbe8eb612a3f0aa239d384c0915a9 253 TIGRFAM TIGR03134 malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit 9 248 6.9E-94 T 29-03-2018 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit GO:0044262 MetaCyc: PWY-6060 Y880_RS27655 6a4dbe8eb612a3f0aa239d384c0915a9 253 SUPERFAMILY SSF52096 26 244 1.17E-18 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS17155 60d5a4f6e8a5196afd4fedc594e3f08a 723 Gene3D G3DSA:2.170.130.10 57 176 2.1E-13 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS17155 60d5a4f6e8a5196afd4fedc594e3f08a 723 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 82 723 0.0 T 29-03-2018 IPR010100 TonB-dependent copper receptor Y880_RS17155 60d5a4f6e8a5196afd4fedc594e3f08a 723 Gene3D G3DSA:2.40.170.20 177 723 2.8E-64 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS17155 60d5a4f6e8a5196afd4fedc594e3f08a 723 Pfam PF00593 TonB dependent receptor 236 721 6.3E-50 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS17155 60d5a4f6e8a5196afd4fedc594e3f08a 723 Pfam PF07715 TonB-dependent Receptor Plug Domain 91 181 3.0E-12 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS17155 60d5a4f6e8a5196afd4fedc594e3f08a 723 SUPERFAMILY SSF56935 71 723 1.08E-94 T 29-03-2018 Y880_RS12795 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 Pfam PF13177 DNA polymerase III, delta subunit 20 159 2.1E-45 T 29-03-2018 Y880_RS12795 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 18 199 1.6E-65 T 29-03-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS12795 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 210 321 6.6E-8 T 29-03-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS12795 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 SUPERFAMILY SSF52540 5 203 4.0E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12795 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 Gene3D G3DSA:1.20.272.10 208 327 2.0E-16 T 29-03-2018 Y880_RS12795 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 Gene3D G3DSA:3.40.50.300 8 163 6.1E-28 T 29-03-2018 Y880_RS24575 e1e32e35e3807ca00e3d0bb4c3112dad 131 PIRSF PIRSF016821 6 131 3.5E-38 T 29-03-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 Y880_RS24575 e1e32e35e3807ca00e3d0bb4c3112dad 131 Gene3D G3DSA:3.10.290.10 2 105 3.6E-23 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS24575 e1e32e35e3807ca00e3d0bb4c3112dad 131 SUPERFAMILY SSF55174 8 103 1.37E-26 T 29-03-2018 Y880_RS24575 e1e32e35e3807ca00e3d0bb4c3112dad 131 Pfam PF01479 S4 domain 9 54 1.4E-9 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS24575 e1e32e35e3807ca00e3d0bb4c3112dad 131 SMART SM00363 9 72 5.9E-6 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS09735 c053b38d1f115f3328baab9f35400217 226 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS09735 c053b38d1f115f3328baab9f35400217 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 6.8E-21 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS09735 c053b38d1f115f3328baab9f35400217 226 Gene3D G3DSA:3.40.50.2300 1 119 9.6E-30 T 29-03-2018 Y880_RS09735 c053b38d1f115f3328baab9f35400217 226 SMART SM00448 1 112 2.1E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS09735 c053b38d1f115f3328baab9f35400217 226 SMART SM00862 145 216 3.1E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS09735 c053b38d1f115f3328baab9f35400217 226 Gene3D G3DSA:1.10.10.10 120 223 8.8E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09735 c053b38d1f115f3328baab9f35400217 226 SUPERFAMILY SSF52172 1 172 1.66E-34 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:3.30.300.30 456 561 1.2E-26 T 29-03-2018 Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:3.40.50.980 218 373 3.3E-42 T 29-03-2018 Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 Pfam PF00501 AMP-binding enzyme 31 461 1.1E-106 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 545 2.9E-17 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:3.40.50.980 22 217 1.0E-38 T 29-03-2018 Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 SUPERFAMILY SSF56801 18 557 3.01E-149 T 29-03-2018 Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:2.30.38.10 374 454 2.4E-27 T 29-03-2018 Y880_RS14555 385cef239568202fe5ab91ed38c3b06c 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS13325 7f41a58c0cf8e2491dc0dc2094ad6ad1 172 Gene3D G3DSA:3.40.50.10070 25 170 1.1E-8 T 29-03-2018 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 Gene3D G3DSA:3.50.50.60 127 243 7.6E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 29-03-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 8.7E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 3.5E-120 T 29-03-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 Gene3D G3DSA:3.50.50.60 259 316 4.8E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 SUPERFAMILY SSF51905 2 313 9.36E-56 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 Gene3D G3DSA:3.50.50.60 1 126 4.4E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.5E-38 T 29-03-2018 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.5E-38 T 29-03-2018 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.5E-38 T 29-03-2018 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.5E-38 T 29-03-2018 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.5E-38 T 29-03-2018 Y880_RS10495 99083a68e91c78d221ecefe8eb6a971b 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 7.0E-49 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23065 5a148be6e30b256d65ebbb73ad16adce 290 ProSitePatterns PS00211 ABC transporters family signature. 184 198 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS23065 5a148be6e30b256d65ebbb73ad16adce 290 Pfam PF00005 ABC transporter 21 211 7.0E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS23065 5a148be6e30b256d65ebbb73ad16adce 290 SUPERFAMILY SSF52540 4 66 5.65E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23065 5a148be6e30b256d65ebbb73ad16adce 290 SUPERFAMILY SSF52540 99 283 5.65E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23065 5a148be6e30b256d65ebbb73ad16adce 290 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 262 283 1.1E-8 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y880_RS23065 5a148be6e30b256d65ebbb73ad16adce 290 Gene3D G3DSA:3.40.50.300 1 289 2.9E-56 T 29-03-2018 Y880_RS23065 5a148be6e30b256d65ebbb73ad16adce 290 SMART SM00382 30 261 8.5E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS20940 6b90a54b611b4d9a8f34c2f767c3dfb3 150 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS20940 6b90a54b611b4d9a8f34c2f767c3dfb3 150 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 8.5E-11 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS20940 6b90a54b611b4d9a8f34c2f767c3dfb3 150 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.2E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS20940 6b90a54b611b4d9a8f34c2f767c3dfb3 150 Pfam PF00114 Pilin (bacterial filament) 35 148 2.8E-20 T 29-03-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 Y880_RS20940 6b90a54b611b4d9a8f34c2f767c3dfb3 150 SUPERFAMILY SSF54523 7 148 2.15E-33 T 29-03-2018 Y880_RS20940 6b90a54b611b4d9a8f34c2f767c3dfb3 150 Gene3D G3DSA:3.30.700.10 7 150 1.2E-26 T 29-03-2018 Y880_RS28080 6bb206f5691c8e003a14819d12801c18 460 Gene3D G3DSA:2.40.160.10 1 460 6.1E-126 T 29-03-2018 Y880_RS28080 6bb206f5691c8e003a14819d12801c18 460 Pfam PF03573 outer membrane porin, OprD family 30 458 7.7E-154 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS10510 9cefb838f8121a0f4bd3dbb2803eb9a3 72 SUPERFAMILY SSF50249 1 70 1.44E-28 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS10510 9cefb838f8121a0f4bd3dbb2803eb9a3 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 3.4E-38 T 29-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Y880_RS10510 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.985 T 29-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Y880_RS10510 9cefb838f8121a0f4bd3dbb2803eb9a3 72 SMART SM00316 4 72 1.7E-6 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS10510 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 1.7E-27 T 29-03-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Y880_RS10510 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Gene3D G3DSA:2.40.50.140 1 72 9.4E-36 T 29-03-2018 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 Hamap MF_00641 Malate synthase G [glcB]. 1 725 426.995 T 29-03-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 723 0.0 T 29-03-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 Gene3D G3DSA:1.20.1220.12 589 724 9.5E-45 T 29-03-2018 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 Gene3D G3DSA:1.10.1860.10 1 88 3.7E-38 T 29-03-2018 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 SUPERFAMILY SSF51645 2 723 0.0 T 29-03-2018 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 Gene3D G3DSA:3.20.20.360 89 216 1.1E-24 T 29-03-2018 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 Gene3D G3DSA:3.20.20.360 220 588 1.6E-105 T 29-03-2018 Y880_RS29100 6a7f039f7965734e0856d8917d701bbb 725 Pfam PF01274 Malate synthase 18 697 2.1E-178 T 29-03-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 SUPERFAMILY SSF53686 1 461 6.42E-165 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 Gene3D G3DSA:3.40.50.1100 106 204 1.9E-15 T 29-03-2018 Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 Gene3D G3DSA:3.90.1380.10 1 88 2.1E-29 T 29-03-2018 IPR029144 Threonine synthase, N-terminal Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 Pfam PF14821 Threonine synthase N terminus 2 80 3.1E-28 T 29-03-2018 IPR029144 Threonine synthase, N-terminal Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 92 398 1.1E-24 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 TIGRFAM TIGR00260 thrC: threonine synthase 67 423 4.0E-80 T 29-03-2018 IPR004450 Threonine synthase-like Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 116 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y880_RS16835 db58a4f9a26c969173e94e2adf940a41 469 Gene3D G3DSA:3.40.50.1100 205 430 5.9E-85 T 29-03-2018 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 13 1166 20.262 T 29-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 SUPERFAMILY SSF52540 389 826 3.82E-93 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 Gene3D G3DSA:1.10.486.10 464 672 7.5E-73 T 29-03-2018 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 SUPERFAMILY SSF52980 841 1163 6.43E-63 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 14 829 1.8E-286 T 29-03-2018 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 Gene3D G3DSA:1.10.10.160 107 214 3.3E-31 T 29-03-2018 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 14 1128 0.0 T 29-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 PIRSF PIRSF000980 13 1171 0.0 T 29-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Y880_RS19700 8a075438658a88ff145bcd6559f015fd 1171 SUPERFAMILY SSF52540 13 374 1.95E-103 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22400 fe241c036f4eaecd5480ea465c13b08e 297 SUPERFAMILY SSF103481 185 282 2.48E-13 T 29-03-2018 Y880_RS22400 fe241c036f4eaecd5480ea465c13b08e 297 Pfam PF00892 EamA-like transporter family 6 130 1.6E-17 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS22400 fe241c036f4eaecd5480ea465c13b08e 297 Pfam PF00892 EamA-like transporter family 142 280 1.5E-13 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS22400 fe241c036f4eaecd5480ea465c13b08e 297 SUPERFAMILY SSF103481 39 134 3.92E-12 T 29-03-2018 Y880_RS00635 0e4223877254566a79a9d482472825c4 146 SUPERFAMILY SSF54593 15 145 5.24E-23 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS00635 0e4223877254566a79a9d482472825c4 146 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 139 1.4E-6 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS00635 0e4223877254566a79a9d482472825c4 146 Gene3D G3DSA:3.10.180.10 7 146 1.5E-20 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS08880 c027b42d00783cd357e4e58c4f2f9d22 288 Gene3D G3DSA:1.10.3720.10 35 284 1.0E-19 T 29-03-2018 Y880_RS08880 c027b42d00783cd357e4e58c4f2f9d22 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 283 1.2E-11 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS08880 c027b42d00783cd357e4e58c4f2f9d22 288 SUPERFAMILY SSF161098 86 269 1.31E-23 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 Pfam PF00581 Rhodanese-like domain 160 273 3.1E-11 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 Pfam PF00581 Rhodanese-like domain 8 132 8.6E-16 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 Gene3D G3DSA:3.40.250.10 1 151 4.0E-32 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 SUPERFAMILY SSF52821 162 283 2.23E-32 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 SUPERFAMILY SSF52821 2 156 2.36E-39 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 Gene3D G3DSA:3.40.250.10 152 284 3.3E-24 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 SMART SM00450 158 278 6.1E-11 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS03355 a24a9f5ac08a5527956dc18a2908a499 284 SMART SM00450 7 135 1.7E-17 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS27120 aa1a0161debafdf2b6375f3e08bfeba8 242 SUPERFAMILY SSF53056 11 227 9.94E-70 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS27120 aa1a0161debafdf2b6375f3e08bfeba8 242 Pfam PF00484 Carbonic anhydrase 55 210 1.7E-50 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS27120 aa1a0161debafdf2b6375f3e08bfeba8 242 SMART SM00947 48 215 1.5E-65 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS27120 aa1a0161debafdf2b6375f3e08bfeba8 242 Gene3D G3DSA:3.40.1050.10 14 234 2.3E-71 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS27120 aa1a0161debafdf2b6375f3e08bfeba8 242 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 60 67 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS27120 aa1a0161debafdf2b6375f3e08bfeba8 242 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 103 123 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 44 122 2.1E-29 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 175 215 2.2E-19 T 29-03-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 PIRSF PIRSF000190 1 215 1.2E-82 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 11 215 40.422 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 SUPERFAMILY SSF50475 8 215 1.66E-71 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 Gene3D G3DSA:2.30.110.10 12 215 1.7E-78 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 215 9.8E-90 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS02040 d239d7625672c2c72026362969ee8f58 215 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 185 198 - T 29-03-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS26765 3ff3ab8392d826aa863761ad56af8fc2 268 SUPERFAMILY SSF51366 1 248 1.51E-92 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Y880_RS26765 3ff3ab8392d826aa863761ad56af8fc2 268 Pfam PF00290 Tryptophan synthase alpha chain 8 263 7.3E-105 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS26765 3ff3ab8392d826aa863761ad56af8fc2 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 259 9.3E-82 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS26765 3ff3ab8392d826aa863761ad56af8fc2 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 263 38.094 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS26765 3ff3ab8392d826aa863761ad56af8fc2 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 29-03-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y880_RS26765 3ff3ab8392d826aa863761ad56af8fc2 268 Gene3D G3DSA:3.20.20.70 2 268 8.2E-86 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS14640 1f2f697c64bbe5d3bcb77cdbd48a5686 285 Gene3D G3DSA:3.40.190.10 23 127 1.2E-10 T 29-03-2018 Y880_RS14640 1f2f697c64bbe5d3bcb77cdbd48a5686 285 TIGRFAM TIGR04553 ABC_peri_selen: putative selenate ABC transporter periplasmic binding protein 29 285 1.6E-113 T 29-03-2018 IPR030836 Putative ABC transporter periplasmic binding protein PhnD-like Y880_RS14640 1f2f697c64bbe5d3bcb77cdbd48a5686 285 SUPERFAMILY SSF53850 51 233 2.61E-41 T 29-03-2018 Y880_RS14640 1f2f697c64bbe5d3bcb77cdbd48a5686 285 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 32 271 2.0E-68 T 29-03-2018 Y880_RS14640 1f2f697c64bbe5d3bcb77cdbd48a5686 285 Gene3D G3DSA:3.40.190.10 128 267 1.7E-33 T 29-03-2018 Y880_RS14640 1f2f697c64bbe5d3bcb77cdbd48a5686 285 SMART SM00062 28 257 0.0056 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS14640 1f2f697c64bbe5d3bcb77cdbd48a5686 285 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 4 244 1.7E-77 T 29-03-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 SUPERFAMILY SSF50022 8 150 3.14E-42 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 Gene3D G3DSA:3.90.380.10 144 419 2.2E-50 T 29-03-2018 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 22 47 5.5E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 178 200 5.5E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 137 163 5.5E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 52 67 5.5E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 73 93 5.5E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 94 114 5.5E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 157 410 6.6E-17 T 29-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 80 103 - T 29-03-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 SUPERFAMILY SSF55961 155 413 1.33E-49 T 29-03-2018 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 Pfam PF00355 Rieske [2Fe-2S] domain 37 121 1.1E-18 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS07595 9521d43356c05fa0437c6675c2213374 424 Gene3D G3DSA:2.102.10.10 35 143 4.0E-22 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS20720 699077b6e631219d073b9ffdcd9876c8 484 Gene3D G3DSA:3.90.1300.10 1 483 2.4E-182 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS20720 699077b6e631219d073b9ffdcd9876c8 484 Pfam PF01425 Amidase 23 464 4.0E-161 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS20720 699077b6e631219d073b9ffdcd9876c8 484 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 10 475 94.316 T 29-03-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS20720 699077b6e631219d073b9ffdcd9876c8 484 SUPERFAMILY SSF75304 3 481 1.83E-171 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS20720 699077b6e631219d073b9ffdcd9876c8 484 ProSitePatterns PS00571 Amidases signature. 150 181 - T 29-03-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 Y880_RS20720 699077b6e631219d073b9ffdcd9876c8 484 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 12 473 8.6E-179 T 29-03-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS25265 a1dcb984918399bd44c22b8c8b13fa78 154 Gene3D G3DSA:3.10.129.10 4 150 4.7E-37 T 29-03-2018 Y880_RS25265 a1dcb984918399bd44c22b8c8b13fa78 154 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 16 124 2.2E-26 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y880_RS25265 a1dcb984918399bd44c22b8c8b13fa78 154 SUPERFAMILY SSF54637 7 141 9.08E-45 T 29-03-2018 IPR029069 HotDog domain Y880_RS25265 a1dcb984918399bd44c22b8c8b13fa78 154 PIRSF PIRSF003230 2 145 1.4E-28 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y880_RS25265 a1dcb984918399bd44c22b8c8b13fa78 154 Pfam PF03061 Thioesterase superfamily 26 110 2.6E-19 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS14875 cb141761b98c2b6e2ec758868f4d4cce 292 SUPERFAMILY SSF103481 196 291 4.05E-16 T 29-03-2018 Y880_RS14875 cb141761b98c2b6e2ec758868f4d4cce 292 Pfam PF00892 EamA-like transporter family 13 141 1.9E-15 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS14875 cb141761b98c2b6e2ec758868f4d4cce 292 Pfam PF00892 EamA-like transporter family 154 286 1.1E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS14875 cb141761b98c2b6e2ec758868f4d4cce 292 SUPERFAMILY SSF103481 41 145 6.93E-15 T 29-03-2018 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 590 6.2E-41 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 SUPERFAMILY SSF46977 454 590 2.35E-49 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 SUPERFAMILY SSF51905 6 262 3.97E-74 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 SUPERFAMILY SSF51905 361 427 3.97E-74 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 SUPERFAMILY SSF56425 240 358 8.52E-40 T 29-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 PIRSF PIRSF000171 1 580 2.6E-48 T 29-03-2018 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:4.10.80.40 544 590 3.1E-14 T 29-03-2018 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:1.20.58.100 433 543 1.2E-34 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 44 53 - T 29-03-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 10 590 2.5E-258 T 29-03-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 Pfam PF00890 FAD binding domain 10 407 4.4E-118 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:3.50.50.60 3 308 5.1E-47 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:3.50.50.60 317 432 1.6E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04955 3eace1ac6ecd017e4622c2f74d66b2ab 590 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 8 590 0.0 T 29-03-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 SUPERFAMILY SSF56104 3 232 6.21E-80 T 29-03-2018 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 29-03-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 31.413 T 29-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 Gene3D G3DSA:3.30.470.20 94 220 1.4E-47 T 29-03-2018 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 Pfam PF01259 SAICAR synthetase 7 231 2.5E-63 T 29-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 233 1.8E-79 T 29-03-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 29-03-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS01840 6c6dd0696f9a52b393a737e9a0265892 236 Gene3D G3DSA:3.30.200.20 1 93 2.3E-27 T 29-03-2018 Y880_RS17700 bb290e286af74211249a93f90ff6c939 317 SUPERFAMILY SSF53850 90 298 2.53E-38 T 29-03-2018 Y880_RS17700 bb290e286af74211249a93f90ff6c939 317 Pfam PF03466 LysR substrate binding domain 88 295 3.2E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS17700 bb290e286af74211249a93f90ff6c939 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.0E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS17700 bb290e286af74211249a93f90ff6c939 317 SUPERFAMILY SSF46785 4 86 6.7E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17700 bb290e286af74211249a93f90ff6c939 317 Gene3D G3DSA:3.40.190.10 179 266 9.0E-21 T 29-03-2018 Y880_RS17700 bb290e286af74211249a93f90ff6c939 317 Gene3D G3DSA:1.10.10.10 2 84 2.0E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17700 bb290e286af74211249a93f90ff6c939 317 Gene3D G3DSA:3.40.190.10 93 178 2.1E-13 T 29-03-2018 Y880_RS24660 a2f6744c59b397f77c6ed6e71cab90fe 109 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 100 5.9E-34 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS24660 a2f6744c59b397f77c6ed6e71cab90fe 109 Pfam PF09498 Protein of unknown function (DUF2388) 31 100 3.2E-32 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS29075 34aa77b47d684da54249b6274e81993a 308 Gene3D G3DSA:3.40.190.10 99 187 5.8E-18 T 29-03-2018 Y880_RS29075 34aa77b47d684da54249b6274e81993a 308 Pfam PF03466 LysR substrate binding domain 96 298 6.8E-25 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS29075 34aa77b47d684da54249b6274e81993a 308 SUPERFAMILY SSF46785 5 89 3.74E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29075 34aa77b47d684da54249b6274e81993a 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 6.0E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29075 34aa77b47d684da54249b6274e81993a 308 SUPERFAMILY SSF53850 92 302 2.01E-44 T 29-03-2018 Y880_RS29075 34aa77b47d684da54249b6274e81993a 308 Gene3D G3DSA:1.10.10.10 8 98 5.0E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29075 34aa77b47d684da54249b6274e81993a 308 Gene3D G3DSA:3.40.190.10 188 275 2.1E-16 T 29-03-2018 Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 Gene3D G3DSA:3.90.1150.10 334 448 5.8E-21 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 Pfam PF00202 Aminotransferase class-III 34 443 1.1E-78 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 SUPERFAMILY SSF53383 28 445 4.0E-115 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 PIRSF PIRSF000521 37 147 0.3 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 PIRSF PIRSF000521 197 447 2.3E-14 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 Gene3D G3DSA:3.40.640.10 80 333 2.5E-66 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 Gene3D G3DSA:3.90.1150.10 11 79 0.004 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS27275 86d10632911fdfe0673bb43526fff6e0 448 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS02490 b8a71d4511ce558b9109ed181b917354 106 Pfam PF09634 Protein of unknown function (DUF2025) 1 105 3.6E-59 T 29-03-2018 IPR023117 PA1123-like domain Y880_RS02490 b8a71d4511ce558b9109ed181b917354 106 SUPERFAMILY SSF160477 1 105 6.8E-56 T 29-03-2018 IPR023117 PA1123-like domain Y880_RS02490 b8a71d4511ce558b9109ed181b917354 106 Gene3D G3DSA:3.90.1650.10 1 105 2.9E-56 T 29-03-2018 IPR023117 PA1123-like domain Y880_RS05360 0069dce9ecc94dbc4248fdee9f434924 595 Pfam PF05947 Type VI secretion system, TssF 5 594 4.7E-179 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like Y880_RS05360 0069dce9ecc94dbc4248fdee9f434924 595 PIRSF PIRSF028304 1 595 1.8E-183 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like Y880_RS05360 0069dce9ecc94dbc4248fdee9f434924 595 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 3 595 5.5E-181 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like Y880_RS18160 fc7c53cb804c93ba4660b4303d73c0b9 160 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 112 122 - T 29-03-2018 IPR020549 Endoribonuclease YbeY, conserved site Y880_RS18160 fc7c53cb804c93ba4660b4303d73c0b9 160 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 146 23.492 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Y880_RS18160 fc7c53cb804c93ba4660b4303d73c0b9 160 Pfam PF02130 Uncharacterized protein family UPF0054 19 142 1.1E-35 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Y880_RS18160 fc7c53cb804c93ba4660b4303d73c0b9 160 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 37 143 5.4E-35 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Y880_RS18160 fc7c53cb804c93ba4660b4303d73c0b9 160 Gene3D G3DSA:3.40.390.30 1 153 1.4E-49 T 29-03-2018 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 Y880_RS18160 fc7c53cb804c93ba4660b4303d73c0b9 160 SUPERFAMILY SSF55486 5 148 1.9E-46 T 29-03-2018 Y880_RS18855 70d1c85033a7a3836af2d0b3eafdab20 219 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 14 216 3.4E-51 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS18855 70d1c85033a7a3836af2d0b3eafdab20 219 Gene3D G3DSA:3.90.850.10 3 219 1.4E-60 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS18855 70d1c85033a7a3836af2d0b3eafdab20 219 SUPERFAMILY SSF56529 11 217 3.66E-61 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS18855 70d1c85033a7a3836af2d0b3eafdab20 219 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 11 216 3.9E-96 T 29-03-2018 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 Y880_RS22830 ec4875b8f152bce56911d03152ea8157 150 Gene3D G3DSA:3.40.630.30 79 146 1.5E-14 T 29-03-2018 Y880_RS22830 ec4875b8f152bce56911d03152ea8157 150 Gene3D G3DSA:3.40.630.30 1 78 2.8E-12 T 29-03-2018 Y880_RS22830 ec4875b8f152bce56911d03152ea8157 150 SUPERFAMILY SSF55729 1 149 2.36E-26 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS22830 ec4875b8f152bce56911d03152ea8157 150 Pfam PF00583 Acetyltransferase (GNAT) family 35 129 6.0E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS17595 17dd19809e082cd70ea3709b5daa1fd4 431 Gene3D G3DSA:1.20.1250.20 1 200 3.7E-27 T 29-03-2018 Y880_RS17595 17dd19809e082cd70ea3709b5daa1fd4 431 Gene3D G3DSA:1.20.1250.20 202 418 4.4E-26 T 29-03-2018 Y880_RS17595 17dd19809e082cd70ea3709b5daa1fd4 431 Pfam PF07690 Major Facilitator Superfamily 17 368 9.4E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS17595 17dd19809e082cd70ea3709b5daa1fd4 431 SUPERFAMILY SSF103473 5 412 4.19E-65 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS22335 3917a67786cac8d716c9a28719376cb3 144 Gene3D G3DSA:3.30.530.20 2 144 1.8E-33 T 29-03-2018 IPR023393 START-like domain Y880_RS22335 3917a67786cac8d716c9a28719376cb3 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 11 135 8.6E-35 T 29-03-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 Y880_RS22335 3917a67786cac8d716c9a28719376cb3 144 SUPERFAMILY SSF55961 1 144 3.14E-35 T 29-03-2018 Y880_RS16005 fa0d7c7ed66ae7083de53031413b67c5 176 Gene3D G3DSA:1.20.950.20 1 175 5.1E-30 T 29-03-2018 Y880_RS16005 fa0d7c7ed66ae7083de53031413b67c5 176 SUPERFAMILY SSF81342 2 172 8.63E-29 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y880_RS16005 fa0d7c7ed66ae7083de53031413b67c5 176 Pfam PF01292 Prokaryotic cytochrome b561 5 172 6.1E-27 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y880_RS09570 bbf54fa44e1b744a0e22d2c56150ffa0 458 SUPERFAMILY SSF143548 17 157 2.88E-44 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Y880_RS09570 bbf54fa44e1b744a0e22d2c56150ffa0 458 Gene3D G3DSA:1.10.4100.10 232 443 2.6E-33 T 29-03-2018 Y880_RS09570 bbf54fa44e1b744a0e22d2c56150ffa0 458 Pfam PF03315 Serine dehydratase beta chain 4 156 7.0E-58 T 29-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y880_RS09570 bbf54fa44e1b744a0e22d2c56150ffa0 458 Pfam PF03313 Serine dehydratase alpha chain 187 452 8.4E-106 T 29-03-2018 IPR005130 Serine dehydratase-like, alpha subunit Y880_RS09570 bbf54fa44e1b744a0e22d2c56150ffa0 458 Gene3D G3DSA:3.30.1330.90 11 159 3.1E-55 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Y880_RS09570 bbf54fa44e1b744a0e22d2c56150ffa0 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 455 4.3E-217 T 29-03-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 Pfam PF00175 Oxidoreductase NAD-binding domain 117 233 2.7E-13 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 Gene3D G3DSA:3.40.50.80 103 258 2.9E-27 T 29-03-2018 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 5.5E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 219 227 5.5E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 56 63 5.5E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 SUPERFAMILY SSF52343 109 258 1.7E-34 T 29-03-2018 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 SUPERFAMILY SSF63380 7 104 2.15E-21 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 Gene3D G3DSA:2.40.30.10 1 101 8.5E-17 T 29-03-2018 Y880_RS21425 1f5d3790f030f8fda024c35a2490c35d 258 Pfam PF00970 Oxidoreductase FAD-binding domain 23 94 1.2E-5 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Y880_RS01485 8613384cabb68026f2f54c2a4fb10ae7 442 Pfam PF02706 Chain length determinant protein 13 81 3.1E-13 T 29-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 Y880_RS01485 8613384cabb68026f2f54c2a4fb10ae7 442 Gene3D G3DSA:3.30.1890.10 49 222 8.5E-29 T 29-03-2018 Y880_RS01485 8613384cabb68026f2f54c2a4fb10ae7 442 Pfam PF13807 G-rich domain on putative tyrosine kinase 368 415 1.4E-9 T 29-03-2018 IPR032807 Tyrosine kinase, G-rich domain Y880_RS01485 8613384cabb68026f2f54c2a4fb10ae7 442 Gene3D G3DSA:1.10.287.210 223 333 1.0E-26 T 29-03-2018 Y880_RS01485 8613384cabb68026f2f54c2a4fb10ae7 442 SUPERFAMILY SSF160355 72 220 9.94E-12 T 29-03-2018 Y880_RS01485 8613384cabb68026f2f54c2a4fb10ae7 442 SUPERFAMILY SSF160355 221 331 1.33E-16 T 29-03-2018 Y880_RS01485 8613384cabb68026f2f54c2a4fb10ae7 442 SUPERFAMILY SSF160355 364 389 1.33E-16 T 29-03-2018 Y880_RS29615 2e1fcd53e49088747aaa1ccf741ea3ab 189 Pfam PF02660 Glycerol-3-phosphate acyltransferase 8 181 3.8E-53 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y880_RS29615 2e1fcd53e49088747aaa1ccf741ea3ab 189 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 4 189 18.694 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y880_RS29615 2e1fcd53e49088747aaa1ccf741ea3ab 189 SMART SM01207 7 182 2.0E-81 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y880_RS29615 2e1fcd53e49088747aaa1ccf741ea3ab 189 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 3 187 4.5E-54 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y880_RS00220 a70336a3b7d70ed690614b8a0c71c1e1 131 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 128 1.8E-52 T 29-03-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y880_RS00220 a70336a3b7d70ed690614b8a0c71c1e1 131 SUPERFAMILY SSF54593 1 127 1.25E-33 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS00220 a70336a3b7d70ed690614b8a0c71c1e1 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 4.3E-19 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS00220 a70336a3b7d70ed690614b8a0c71c1e1 131 Gene3D G3DSA:3.10.180.10 1 131 1.3E-34 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 19 256 1.5E-66 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 Gene3D G3DSA:3.30.70.580 16 122 9.4E-33 T 29-03-2018 Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 PIRSF PIRSF001430 17 277 8.3E-74 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 Pfam PF01416 tRNA pseudouridine synthase 25 120 1.1E-5 T 29-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 Pfam PF01416 tRNA pseudouridine synthase 160 262 1.9E-31 T 29-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 SUPERFAMILY SSF55120 18 275 4.32E-91 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 Gene3D G3DSA:3.30.70.660 123 260 1.2E-37 T 29-03-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS13595 c53d4ab4d842854d173d0c59077967fd 285 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 18 261 34.62 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS21385 c8345e1ca0dad9808f08ab02d6ffc6aa 125 Gene3D G3DSA:2.40.10.220 1 125 8.0E-22 T 29-03-2018 Y880_RS21385 c8345e1ca0dad9808f08ab02d6ffc6aa 125 Pfam PF07238 PilZ domain 7 103 4.0E-12 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS21385 c8345e1ca0dad9808f08ab02d6ffc6aa 125 SUPERFAMILY SSF141371 1 123 4.32E-39 T 29-03-2018 Y880_RS21385 c8345e1ca0dad9808f08ab02d6ffc6aa 125 PIRSF PIRSF028141 4 123 2.3E-39 T 29-03-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type Y880_RS29995 bdbb2f6593686af0e2581f88800b8a7e 360 Gene3D G3DSA:3.30.700.10 289 360 2.4E-6 T 29-03-2018 Y880_RS29995 bdbb2f6593686af0e2581f88800b8a7e 360 SUPERFAMILY SSF54523 292 325 2.83E-5 T 29-03-2018 Y880_RS29995 bdbb2f6593686af0e2581f88800b8a7e 360 Gene3D G3DSA:2.20.28.20 106 130 2.9E-5 T 29-03-2018 Y880_RS29995 bdbb2f6593686af0e2581f88800b8a7e 360 Pfam PF05656 Protein of unknown function (DUF805) 177 279 4.8E-21 T 29-03-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 Y880_RS28545 3226324bd30eb7e5b2aedf0586294de3 243 SUPERFAMILY SSF53955 55 233 4.22E-57 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS28545 3226324bd30eb7e5b2aedf0586294de3 243 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 15 234 2.4E-104 T 29-03-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 Y880_RS28545 3226324bd30eb7e5b2aedf0586294de3 243 Pfam PF00912 Transglycosylase 65 229 5.5E-46 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS28545 3226324bd30eb7e5b2aedf0586294de3 243 Gene3D G3DSA:1.10.3810.10 50 235 3.2E-51 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS28545 3226324bd30eb7e5b2aedf0586294de3 243 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 12 235 44.699 T 29-03-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 Gene3D G3DSA:1.10.10.10 3 87 3.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 Gene3D G3DSA:3.40.190.10 184 271 5.4E-13 T 29-03-2018 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.9E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.9E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.9E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 SUPERFAMILY SSF46785 5 85 1.81E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 Gene3D G3DSA:3.40.190.10 95 183 2.6E-15 T 29-03-2018 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 7.6E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 SUPERFAMILY SSF53850 96 297 1.19E-39 T 29-03-2018 Y880_RS07805 2fc71648a26153062dfd85c87139e873 301 Pfam PF03466 LysR substrate binding domain 97 296 8.4E-27 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS18815 ee8a710dee1971f1e95b2a019e334f77 396 Gene3D G3DSA:1.20.1250.20 198 386 1.1E-16 T 29-03-2018 Y880_RS18815 ee8a710dee1971f1e95b2a019e334f77 396 SUPERFAMILY SSF103473 7 385 1.7E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS18815 ee8a710dee1971f1e95b2a019e334f77 396 Gene3D G3DSA:1.20.1250.20 7 197 2.0E-25 T 29-03-2018 Y880_RS18815 ee8a710dee1971f1e95b2a019e334f77 396 Hamap MF_00517 Probable sugar efflux transporter [sotB]. 1 390 29.901 T 29-03-2018 IPR023495 Sugar efflux transporter, putative Y880_RS18815 ee8a710dee1971f1e95b2a019e334f77 396 Pfam PF07690 Major Facilitator Superfamily 18 349 1.2E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS15345 fc8884c9c2517fa6ac7db9bbe4d0a233 197 Pfam PF03358 NADPH-dependent FMN reductase 1 143 3.7E-31 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y880_RS15345 fc8884c9c2517fa6ac7db9bbe4d0a233 197 Gene3D G3DSA:3.40.50.360 1 193 5.4E-30 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS15345 fc8884c9c2517fa6ac7db9bbe4d0a233 197 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 3 171 2.4E-69 T 29-03-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 Y880_RS15345 fc8884c9c2517fa6ac7db9bbe4d0a233 197 SUPERFAMILY SSF52218 1 168 3.26E-29 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS05620 a277f01a08a9ffa6202be5a3d93148d4 145 Gene3D G3DSA:3.30.1460.10 47 130 2.8E-10 T 29-03-2018 Y880_RS05620 a277f01a08a9ffa6202be5a3d93148d4 145 Gene3D G3DSA:1.10.287.390 7 39 5.1E-15 T 29-03-2018 Y880_RS05620 a277f01a08a9ffa6202be5a3d93148d4 145 Pfam PF05932 Tir chaperone protein (CesT) family 9 126 2.0E-24 T 29-03-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 Y880_RS05620 a277f01a08a9ffa6202be5a3d93148d4 145 SUPERFAMILY SSF69635 4 129 5.23E-28 T 29-03-2018 Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 Pfam PF00072 Response regulator receiver domain 5 113 1.4E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 Gene3D G3DSA:1.10.10.10 123 225 1.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 SMART SM00862 147 223 3.5E-16 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 Gene3D G3DSA:3.40.50.2300 2 122 5.4E-36 T 29-03-2018 Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 222 4.8E-16 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 SUPERFAMILY SSF46894 123 223 1.02E-21 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 SMART SM00448 2 113 1.3E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS14045 5c23d62536a0f573f9e3b6cd54c64c34 225 SUPERFAMILY SSF52172 4 128 8.25E-40 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS20320 7de30bdf4172bac836b8879f38732bee 307 Pfam PF01551 Peptidase family M23 202 296 6.1E-32 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS20320 7de30bdf4172bac836b8879f38732bee 307 SUPERFAMILY SSF51261 94 300 3.3E-56 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS20320 7de30bdf4172bac836b8879f38732bee 307 Gene3D G3DSA:2.70.70.10 161 305 1.3E-46 T 29-03-2018 Y880_RS20320 7de30bdf4172bac836b8879f38732bee 307 Gene3D G3DSA:1.20.120.330 56 160 2.8E-5 T 29-03-2018 Y880_RS24385 16a071c4edc24c44346f2669ba432b27 509 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 493 1.3E-155 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 Y880_RS24385 16a071c4edc24c44346f2669ba432b27 509 Gene3D G3DSA:1.20.1250.20 13 195 3.5E-33 T 29-03-2018 Y880_RS24385 16a071c4edc24c44346f2669ba432b27 509 Gene3D G3DSA:1.20.1250.20 255 504 1.8E-25 T 29-03-2018 Y880_RS24385 16a071c4edc24c44346f2669ba432b27 509 Pfam PF07690 Major Facilitator Superfamily 19 413 4.9E-52 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS24385 16a071c4edc24c44346f2669ba432b27 509 SUPERFAMILY SSF103473 8 199 3.01E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS24385 16a071c4edc24c44346f2669ba432b27 509 SUPERFAMILY SSF103473 471 496 3.01E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS24385 16a071c4edc24c44346f2669ba432b27 509 SUPERFAMILY SSF103473 251 422 3.01E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS11330 ddd3605cc747ca8beb2a998526bf60f4 231 Pfam PF12697 Alpha/beta hydrolase family 7 220 9.2E-17 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS11330 ddd3605cc747ca8beb2a998526bf60f4 231 SUPERFAMILY SSF53474 2 224 2.1E-25 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS11330 ddd3605cc747ca8beb2a998526bf60f4 231 Gene3D G3DSA:3.40.50.1820 2 226 2.8E-23 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 Gene3D G3DSA:1.10.10.60 219 265 4.4E-5 T 29-03-2018 Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 Gene3D G3DSA:1.10.10.60 161 218 1.9E-12 T 29-03-2018 Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 SUPERFAMILY SSF46689 217 263 2.46E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 Pfam PF12833 Helix-turn-helix domain 186 263 8.7E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 SUPERFAMILY SSF51182 12 189 7.56E-18 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 Gene3D G3DSA:2.60.120.10 5 111 2.2E-6 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 SMART SM00342 180 262 9.7E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS27440 9264dfbb8d6448a4b09517465d20538b 265 Pfam PF02311 AraC-like ligand binding domain 37 130 3.4E-7 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS26075 016fdf1ab4dc66b285d17ff86288b01d 409 Pfam PF07670 Nucleoside recognition 52 157 1.1E-7 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Y880_RS26075 016fdf1ab4dc66b285d17ff86288b01d 409 PIRSF PIRSF036542 1 409 5.5E-207 T 29-03-2018 IPR011415 Predicted bifunctional spore maturation protein, fused SpmA/SpmB Y880_RS28495 ba10126147c184f74c48b1c15af73615 332 Gene3D G3DSA:3.40.50.1820 31 328 7.2E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS28495 ba10126147c184f74c48b1c15af73615 332 Pfam PF00561 alpha/beta hydrolase fold 60 308 2.2E-17 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS28495 ba10126147c184f74c48b1c15af73615 332 SUPERFAMILY SSF53474 24 310 1.67E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS28495 ba10126147c184f74c48b1c15af73615 332 PIRSF PIRSF005211 1 332 4.3E-113 T 29-03-2018 IPR012020 AB hydrolase 4 family Y880_RS28495 ba10126147c184f74c48b1c15af73615 332 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 233 274 - T 29-03-2018 IPR000952 AB hydrolase 4, conserved site Y880_RS02335 cd8d587771b50fe735eefcc014aa9560 126 PIRSF PIRSF039090 1 126 5.7E-44 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS02335 cd8d587771b50fe735eefcc014aa9560 126 Gene3D G3DSA:1.20.120.340 2 126 1.1E-43 T 29-03-2018 Y880_RS02335 cd8d587771b50fe735eefcc014aa9560 126 TIGRFAM TIGR00208 fliS: flagellar protein FliS 4 123 2.0E-27 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS02335 cd8d587771b50fe735eefcc014aa9560 126 Pfam PF02561 Flagellar protein FliS 8 124 9.8E-38 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS02335 cd8d587771b50fe735eefcc014aa9560 126 SUPERFAMILY SSF101116 8 124 6.28E-39 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 Y880_RS11530 ea24d4be3421c764f6dd47b056956e9f 394 SMART SM00448 6 118 2.1E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS11530 ea24d4be3421c764f6dd47b056956e9f 394 Pfam PF00072 Response regulator receiver domain 9 110 1.5E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS11530 ea24d4be3421c764f6dd47b056956e9f 394 SMART SM00331 174 391 3.9E-13 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS11530 ea24d4be3421c764f6dd47b056956e9f 394 Gene3D G3DSA:3.40.50.2300 1 154 3.0E-39 T 29-03-2018 Y880_RS11530 ea24d4be3421c764f6dd47b056956e9f 394 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 201 391 8.2E-31 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS11530 ea24d4be3421c764f6dd47b056956e9f 394 Gene3D G3DSA:3.60.40.10 155 394 2.0E-27 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS11530 ea24d4be3421c764f6dd47b056956e9f 394 SUPERFAMILY SSF52172 7 149 5.98E-40 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS26945 c7c21e281c74ef01a575645d552f9853 681 Gene3D G3DSA:1.10.1370.10 455 681 2.8E-66 T 29-03-2018 Y880_RS26945 c7c21e281c74ef01a575645d552f9853 681 Gene3D G3DSA:1.10.1370.10 142 448 2.1E-56 T 29-03-2018 Y880_RS26945 c7c21e281c74ef01a575645d552f9853 681 Pfam PF01432 Peptidase family M3 224 675 1.6E-150 T 29-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 Y880_RS26945 c7c21e281c74ef01a575645d552f9853 681 Gene3D G3DSA:1.20.1050.40 5 140 2.6E-40 T 29-03-2018 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal Y880_RS26945 c7c21e281c74ef01a575645d552f9853 681 SUPERFAMILY SSF55486 4 675 2.2E-208 T 29-03-2018 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 SMART SM00244 21 185 4.4E-38 T 29-03-2018 IPR001107 Band 7 domain Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 161 179 5.7E-8 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 28 50 5.7E-8 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 180 201 5.7E-8 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 115 132 5.7E-8 T 29-03-2018 IPR001972 Stomatin family GO:0016020 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 SUPERFAMILY SSF117892 53 192 7.45E-28 T 29-03-2018 IPR001107 Band 7 domain Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 PIRSF PIRSF005651 1 289 6.5E-94 T 29-03-2018 IPR010200 HflC GO:0016021|GO:0052547 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 TIGRFAM TIGR01932 hflC: HflC protein 154 285 1.4E-45 T 29-03-2018 IPR010200 HflC GO:0016021|GO:0052547 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 TIGRFAM TIGR01932 hflC: HflC protein 7 157 6.8E-40 T 29-03-2018 IPR010200 HflC GO:0016021|GO:0052547 Y880_RS23230 d6764fabb7c470a2657fca56f37e95a0 289 Pfam PF01145 SPFH domain / Band 7 family 25 200 1.7E-29 T 29-03-2018 IPR001107 Band 7 domain Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 SUPERFAMILY SSF52343 204 336 6.42E-37 T 29-03-2018 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 Gene3D G3DSA:3.10.20.30 1 106 2.2E-20 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 SUPERFAMILY SSF63380 107 204 6.09E-24 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 Gene3D G3DSA:3.40.50.80 205 340 2.3E-26 T 29-03-2018 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 SUPERFAMILY SSF54292 3 88 1.84E-22 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 Pfam PF00970 Oxidoreductase FAD-binding domain 111 204 1.3E-21 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 Gene3D G3DSA:2.40.30.10 107 204 1.6E-18 T 29-03-2018 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 1.0E-15 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 303 311 3.8E-26 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 198 207 3.8E-26 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 238 247 3.8E-26 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 213 232 3.8E-26 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 154 161 3.8E-26 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 137 149 3.8E-26 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 Pfam PF00175 Oxidoreductase NAD-binding domain 214 317 8.1E-21 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 303 311 1.8E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 213 232 1.8E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 154 161 1.8E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS09920 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 238 247 1.8E-6 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS22555 798e6e4f687a3eef33912d7c9b772b73 208 Gene3D G3DSA:1.20.950.20 1 208 5.1E-48 T 29-03-2018 Y880_RS22555 798e6e4f687a3eef33912d7c9b772b73 208 Pfam PF01292 Prokaryotic cytochrome b561 7 175 5.6E-21 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y880_RS22555 798e6e4f687a3eef33912d7c9b772b73 208 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 5 203 1.2E-60 T 29-03-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 Y880_RS22555 798e6e4f687a3eef33912d7c9b772b73 208 SUPERFAMILY SSF81342 3 206 1.41E-51 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:3.50.50.60 1 48 1.9E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 SUPERFAMILY SSF51905 1 344 5.1E-65 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 462 3.6E-39 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 2.0E-71 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 46 56 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 436 456 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 5.5E-82 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 8.5E-42 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 8.5E-42 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 8.5E-42 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 8.5E-42 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 8.5E-42 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:3.50.50.60 279 343 7.8E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 PIRSF PIRSF000350 1 471 3.5E-90 T 29-03-2018 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:3.50.50.60 122 258 4.2E-28 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:3.30.390.30 344 470 1.1E-44 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 SUPERFAMILY SSF55424 349 473 2.58E-42 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 472 2.7E-164 T 29-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Y880_RS04975 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:1.10.287.990 49 112 7.5E-22 T 29-03-2018 Y880_RS13985 4c0eeba137e6ccc8ca005953ffc0f2af 331 Pfam PF02685 Glucokinase 14 325 8.3E-106 T 29-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Y880_RS13985 4c0eeba137e6ccc8ca005953ffc0f2af 331 Hamap MF_00524 Glucokinase [glk]. 12 326 32.194 T 29-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Y880_RS13985 4c0eeba137e6ccc8ca005953ffc0f2af 331 Gene3D G3DSA:3.30.420.40 1 118 1.1E-17 T 29-03-2018 Y880_RS13985 4c0eeba137e6ccc8ca005953ffc0f2af 331 Gene3D G3DSA:3.40.367.20 119 309 6.8E-27 T 29-03-2018 Y880_RS13985 4c0eeba137e6ccc8ca005953ffc0f2af 331 SUPERFAMILY SSF53067 14 327 1.65E-52 T 29-03-2018 Y880_RS13985 4c0eeba137e6ccc8ca005953ffc0f2af 331 TIGRFAM TIGR00749 glk: glucokinase 14 320 7.3E-76 T 29-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 SUPERFAMILY SSF46689 287 337 1.43E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 318 334 5.7E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 303 318 5.7E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 Pfam PF12833 Helix-turn-helix domain 258 336 1.4E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 Gene3D G3DSA:1.10.10.60 277 338 1.3E-14 T 29-03-2018 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 Gene3D G3DSA:1.10.10.60 232 276 8.6E-4 T 29-03-2018 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 SMART SM00342 252 334 2.0E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS13140 a995457d75522bbfe50900eee2985fe7 343 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 23 208 3.5E-52 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS28565 dc02cd8b658f0a2163eead4c07cc1383 244 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 55 243 7.5E-59 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Y880_RS28565 dc02cd8b658f0a2163eead4c07cc1383 244 Gene3D G3DSA:3.40.50.150 35 244 1.6E-30 T 29-03-2018 Y880_RS28565 dc02cd8b658f0a2163eead4c07cc1383 244 Pfam PF02390 Putative methyltransferase 69 238 5.0E-55 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Y880_RS28565 dc02cd8b658f0a2163eead4c07cc1383 244 SUPERFAMILY SSF53335 22 242 9.36E-41 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS28565 dc02cd8b658f0a2163eead4c07cc1383 244 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 29 243 29.803 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 SUPERFAMILY SSF53850 89 294 1.59E-23 T 29-03-2018 Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 Gene3D G3DSA:1.10.10.10 3 93 2.2E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 Gene3D G3DSA:3.40.190.10 186 268 1.8E-11 T 29-03-2018 Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 5.9E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 SUPERFAMILY SSF46785 4 89 2.91E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 Pfam PF03466 LysR substrate binding domain 90 292 2.4E-29 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS25795 dfa182bf882bb4784efcd287a9a51f8d 302 Gene3D G3DSA:3.40.190.10 94 185 8.9E-8 T 29-03-2018 Y880_RS09010 4200df470ae48e1dc9f416623bfb717a 538 Gene3D G3DSA:3.30.1120.10 440 512 3.7E-12 T 29-03-2018 Y880_RS09010 4200df470ae48e1dc9f416623bfb717a 538 SUPERFAMILY SSF53649 7 253 1.55E-115 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS09010 4200df470ae48e1dc9f416623bfb717a 538 SUPERFAMILY SSF53649 296 502 1.55E-115 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS09010 4200df470ae48e1dc9f416623bfb717a 538 Pfam PF00884 Sulfatase 8 392 7.6E-58 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS09010 4200df470ae48e1dc9f416623bfb717a 538 Gene3D G3DSA:3.40.720.10 5 427 5.5E-82 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 TIGRFAM TIGR03138 QueF: queuine synthase 5 276 2.1E-123 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 276 150.477 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 Gene3D G3DSA:3.30.1130.10 16 131 3.0E-38 T 29-03-2018 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 PIRSF PIRSF004750 1 276 3.6E-119 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 Pfam PF14489 QueF-like protein 190 262 1.3E-23 T 29-03-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 SUPERFAMILY SSF55620 132 259 1.78E-10 T 29-03-2018 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 16 126 1.6E-46 T 29-03-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y880_RS11570 bbd147d5f969b98e8dfafa7a650cc300 276 Gene3D G3DSA:3.30.1130.10 139 276 7.1E-43 T 29-03-2018 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 Gene3D G3DSA:3.40.190.80 148 268 1.6E-36 T 29-03-2018 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 215 229 - T 29-03-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 Gene3D G3DSA:3.30.540.10 1 147 2.4E-47 T 29-03-2018 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 Pfam PF00459 Inositol monophosphatase family 1 258 1.1E-66 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 160 186 1.5E-21 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 1.5E-21 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 106 125 1.5E-21 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 202 214 1.5E-21 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 29-03-2018 IPR020583 Inositol monophosphatase, metal-binding site Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 SUPERFAMILY SSF56655 1 265 1.31E-84 T 29-03-2018 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 2.6E-62 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 2.6E-62 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 181 202 2.6E-62 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.6E-62 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.6E-62 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS17295 cedc47271ccc06ebf001635b73db0c30 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 2.6E-62 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 SUPERFAMILY SSF52540 148 390 2.2E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 Gene3D G3DSA:1.10.8.60 322 378 1.9E-21 T 29-03-2018 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 Gene3D G3DSA:3.40.50.2300 1 129 2.0E-28 T 29-03-2018 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 Pfam PF00158 Sigma-54 interaction domain 149 315 3.0E-73 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 SMART SM00448 2 109 6.2E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 Pfam PF00072 Response regulator receiver domain 4 109 2.1E-21 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 Gene3D G3DSA:3.40.50.300 145 321 4.7E-30 T 29-03-2018 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 Gene3D G3DSA:1.10.10.10 451 476 0.0017 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 362 371 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 173 186 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 SMART SM00382 169 334 7.6E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 SUPERFAMILY SSF52172 1 194 3.98E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 235 250 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS22110 f7d542f3cd87112323c6251fa57fd831 478 Gene3D G3DSA:1.10.10.10 379 450 0.014 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 SMART SM00387 315 419 5.4E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 SUPERFAMILY SSF55874 266 417 2.23E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 1.3E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 397 1.3E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 416 1.3E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 1.3E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 269 5.7E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 318 417 1.6E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 SUPERFAMILY SSF47384 205 271 5.69E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 Gene3D G3DSA:3.30.565.10 308 420 5.0E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 SMART SM00388 207 273 1.6E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS20775 da4ffc84eaa02c19c608add6b5b30eb6 422 Gene3D G3DSA:1.10.287.130 191 268 1.0E-6 T 29-03-2018 Y880_RS16845 6458846b6e28ed42340cc963a0c4eea0 242 Gene3D G3DSA:3.10.450.70 21 84 2.6E-20 T 29-03-2018 Y880_RS16845 6458846b6e28ed42340cc963a0c4eea0 242 Pfam PF10411 Disulfide bond isomerase protein N-terminus 29 82 3.8E-18 T 29-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Y880_RS16845 6458846b6e28ed42340cc963a0c4eea0 242 Pfam PF13098 Thioredoxin-like domain 114 237 9.8E-27 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS16845 6458846b6e28ed42340cc963a0c4eea0 242 SUPERFAMILY SSF54423 25 86 1.24E-13 T 29-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Y880_RS16845 6458846b6e28ed42340cc963a0c4eea0 242 ProSitePatterns PS00194 Thioredoxin family active site. 122 140 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS16845 6458846b6e28ed42340cc963a0c4eea0 242 Gene3D G3DSA:3.40.30.10 110 242 9.8E-26 T 29-03-2018 Y880_RS16845 6458846b6e28ed42340cc963a0c4eea0 242 SUPERFAMILY SSF52833 96 236 1.16E-36 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 SUPERFAMILY SSF51215 24 135 1.44E-21 T 29-03-2018 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 Pfam PF02311 AraC-like ligand binding domain 18 146 8.1E-27 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 SUPERFAMILY SSF46689 170 217 4.84E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 Gene3D G3DSA:1.10.10.60 171 219 2.8E-10 T 29-03-2018 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 SMART SM00342 183 265 2.7E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 Gene3D G3DSA:2.60.120.280 15 170 5.9E-10 T 29-03-2018 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 Pfam PF12833 Helix-turn-helix domain 189 266 1.9E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 SUPERFAMILY SSF46689 219 266 2.64E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09785 0f7ae8b3e5fe79fc8ea0f8035b583d90 271 Gene3D G3DSA:1.10.10.60 220 270 1.5E-12 T 29-03-2018 Y880_RS04840 40f0e9b452475a81ced7f22398fbec4e 352 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 350 75.524 T 29-03-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 Y880_RS04840 40f0e9b452475a81ced7f22398fbec4e 352 SUPERFAMILY SSF53335 181 274 2.61E-13 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS04840 40f0e9b452475a81ced7f22398fbec4e 352 Gene3D G3DSA:3.40.50.150 172 351 2.4E-18 T 29-03-2018 Y880_RS04840 40f0e9b452475a81ced7f22398fbec4e 352 Pfam PF01728 FtsJ-like methyltransferase 182 275 2.0E-8 T 29-03-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Y880_RS04840 40f0e9b452475a81ced7f22398fbec4e 352 PIRSF PIRSF028774 1 352 3.4E-169 T 29-03-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:1.20.272.10 245 339 5.8E-37 T 29-03-2018 Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 SMART SM00382 46 163 4.2E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:1.10.8.60 152 236 2.4E-19 T 29-03-2018 Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 Pfam PF16193 AAA C-terminal domain 184 260 2.4E-20 T 29-03-2018 IPR032423 AAA C-terminal domain Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 SUPERFAMILY SSF48019 245 427 5.95E-75 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:3.40.50.300 4 151 6.0E-29 T 29-03-2018 Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 SUPERFAMILY SSF52540 8 234 2.14E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:1.10.3710.10 341 441 9.3E-36 T 29-03-2018 Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 13 142 1.3E-15 T 29-03-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Y880_RS10480 54e9ed3406079ce6dfdf519113afcd33 441 Pfam PF12002 MgsA AAA+ ATPase C terminal 261 427 1.3E-67 T 29-03-2018 IPR021886 MgsA AAA+ ATPase C-terminal Y880_RS10090 8c4d6f97232bf0386bc98681ccd93952 270 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 269 2.6E-82 T 29-03-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Y880_RS10090 8c4d6f97232bf0386bc98681ccd93952 270 SUPERFAMILY SSF56219 1 269 5.1E-83 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS10090 8c4d6f97232bf0386bc98681ccd93952 270 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 262 4.9E-17 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS10090 8c4d6f97232bf0386bc98681ccd93952 270 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 29-03-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Y880_RS10090 8c4d6f97232bf0386bc98681ccd93952 270 Gene3D G3DSA:3.60.10.10 1 270 5.2E-49 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS10090 8c4d6f97232bf0386bc98681ccd93952 270 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 269 2.7E-94 T 29-03-2018 Y880_RS13090 9601a574169072103f80d7c4f1450863 145 Pfam PF00582 Universal stress protein family 3 141 1.3E-33 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS13090 9601a574169072103f80d7c4f1450863 145 SUPERFAMILY SSF52402 3 141 1.93E-36 T 29-03-2018 Y880_RS13090 9601a574169072103f80d7c4f1450863 145 Gene3D G3DSA:3.40.50.620 2 145 2.4E-36 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS13090 9601a574169072103f80d7c4f1450863 145 PRINTS PR01438 Universal stress protein signature 119 141 4.6E-14 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS13090 9601a574169072103f80d7c4f1450863 145 PRINTS PR01438 Universal stress protein signature 3 21 4.6E-14 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS13090 9601a574169072103f80d7c4f1450863 145 PRINTS PR01438 Universal stress protein signature 102 114 4.6E-14 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS13090 9601a574169072103f80d7c4f1450863 145 PIRSF PIRSF006276 1 144 2.3E-48 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS11535 937d5361786290e99e0924d5799723ca 99 SUPERFAMILY SSF141371 6 94 2.35E-16 T 29-03-2018 Y880_RS11535 937d5361786290e99e0924d5799723ca 99 Gene3D G3DSA:2.40.10.220 4 99 6.2E-16 T 29-03-2018 Y880_RS11535 937d5361786290e99e0924d5799723ca 99 Pfam PF07238 PilZ domain 10 95 3.2E-13 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS07415 0d31afa8bc2388009e7f4d65fe552959 664 SUPERFAMILY SSF56300 319 361 4.8E-7 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS07415 0d31afa8bc2388009e7f4d65fe552959 664 SUPERFAMILY SSF56300 412 566 4.8E-7 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS07415 0d31afa8bc2388009e7f4d65fe552959 664 Gene3D G3DSA:3.60.21.10 136 655 1.7E-31 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS21600 cd465d9bd289757131db3d8f1377aadb 212 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 2.5E-88 T 29-03-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Y880_RS21600 cd465d9bd289757131db3d8f1377aadb 212 SUPERFAMILY SSF53271 3 206 4.33E-65 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS21600 cd465d9bd289757131db3d8f1377aadb 212 Gene3D G3DSA:3.40.50.2020 1 206 7.3E-60 T 29-03-2018 Y880_RS21600 cd465d9bd289757131db3d8f1377aadb 212 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.829 T 29-03-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Y880_RS21600 cd465d9bd289757131db3d8f1377aadb 212 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 6.3E-63 T 29-03-2018 Y880_RS26140 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 84 95 1.5E-8 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS26140 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 41 51 1.5E-8 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS26140 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 30 41 1.5E-8 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS26140 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 69 81 1.5E-8 T 29-03-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y880_RS26140 4a1b744abf8d94a3c517682460a10160 97 Gene3D G3DSA:1.10.760.10 4 96 3.6E-10 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26140 4a1b744abf8d94a3c517682460a10160 97 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 19 94 1.4E-13 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26140 4a1b744abf8d94a3c517682460a10160 97 SUPERFAMILY SSF46626 20 95 1.0E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 34 51 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 Pfam PF00248 Aldo/keto reductase family 12 255 3.5E-46 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 PIRSF PIRSF000097 2 270 5.0E-60 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 30 54 3.5E-42 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 86 104 3.5E-42 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 154 183 3.5E-42 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 119 136 3.5E-42 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 191 215 3.5E-42 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 Gene3D G3DSA:3.20.20.100 2 268 6.1E-81 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 SUPERFAMILY SSF51430 7 262 7.33E-79 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS19095 cc796ebd2e59a5ddf2248dedcb82cc49 272 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 119 136 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 Gene3D G3DSA:3.40.50.300 74 359 3.7E-88 T 29-03-2018 Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 93 2.3E-10 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 SUPERFAMILY SSF52540 96 365 1.95E-97 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 20 438 2.4E-172 T 29-03-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 SMART SM00382 162 343 3.3E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 350 359 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 359 3.3E-78 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS05555 f44b7aa5a71514aff0b698c2c92617b2 440 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 22 438 5.3E-201 T 29-03-2018 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Y880_RS08695 cf3347d996e404fd25e7fba784904cbb 171 Pfam PF13673 Acetyltransferase (GNAT) domain 49 139 1.3E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS08695 cf3347d996e404fd25e7fba784904cbb 171 Gene3D G3DSA:3.40.630.30 1 87 8.3E-10 T 29-03-2018 Y880_RS08695 cf3347d996e404fd25e7fba784904cbb 171 SUPERFAMILY SSF55729 1 138 2.4E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS08695 cf3347d996e404fd25e7fba784904cbb 171 Gene3D G3DSA:3.40.630.30 88 150 6.8E-13 T 29-03-2018 Y880_RS13285 6b3a02d87a33c301216b3558e6ab3e4d 634 SUPERFAMILY SSF53187 76 348 3.64E-39 T 29-03-2018 Y880_RS13285 6b3a02d87a33c301216b3558e6ab3e4d 634 Pfam PF00246 Zinc carboxypeptidase 86 272 1.9E-17 T 29-03-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Y880_RS13285 6b3a02d87a33c301216b3558e6ab3e4d 634 Gene3D G3DSA:3.40.630.10 67 367 4.0E-36 T 29-03-2018 Y880_RS17010 babd4b73fa0f8b5a14eb22e03bc61099 182 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 77 114 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Y880_RS17010 babd4b73fa0f8b5a14eb22e03bc61099 182 SUPERFAMILY SSF53927 26 177 3.68E-55 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y880_RS17010 babd4b73fa0f8b5a14eb22e03bc61099 182 Pfam PF14437 MafB19-like deaminase 30 173 2.7E-30 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Y880_RS17010 babd4b73fa0f8b5a14eb22e03bc61099 182 Gene3D G3DSA:3.40.140.10 23 182 1.7E-53 T 29-03-2018 Y880_RS17010 babd4b73fa0f8b5a14eb22e03bc61099 182 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 32 173 46.038 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Y880_RS14010 4f3dab0e2991357d271e248200157c58 332 Gene3D G3DSA:1.10.10.10 1 88 5.4E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14010 4f3dab0e2991357d271e248200157c58 332 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 8 174 1.2E-33 T 29-03-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Y880_RS14010 4f3dab0e2991357d271e248200157c58 332 SUPERFAMILY SSF46785 87 163 6.89E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14010 4f3dab0e2991357d271e248200157c58 332 Gene3D G3DSA:1.10.10.10 89 180 5.6E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14010 4f3dab0e2991357d271e248200157c58 332 SUPERFAMILY SSF46785 5 86 3.81E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14010 4f3dab0e2991357d271e248200157c58 332 Pfam PF04079 Segregation and condensation complex subunit ScpB 12 172 2.5E-49 T 29-03-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Y880_RS24350 4c426e816fca0e99c5056cb3513f50d4 250 SMART SM00062 26 248 3.5E-63 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS24350 4c426e816fca0e99c5056cb3513f50d4 250 Gene3D G3DSA:3.40.190.10 10 148 6.8E-38 T 29-03-2018 Y880_RS24350 4c426e816fca0e99c5056cb3513f50d4 250 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 49 62 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 Y880_RS24350 4c426e816fca0e99c5056cb3513f50d4 250 Gene3D G3DSA:3.40.190.10 149 250 1.6E-17 T 29-03-2018 Y880_RS24350 4c426e816fca0e99c5056cb3513f50d4 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 245 2.5E-65 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS24350 4c426e816fca0e99c5056cb3513f50d4 250 SUPERFAMILY SSF53850 5 249 3.57E-73 T 29-03-2018 Y880_RS16540 cf51a9a56bb4f549b892e31922692964 367 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 353 6.7E-76 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS16540 cf51a9a56bb4f549b892e31922692964 367 Gene3D G3DSA:1.10.287.470 115 158 5.5E-11 T 29-03-2018 Y880_RS16540 cf51a9a56bb4f549b892e31922692964 367 Gene3D G3DSA:2.40.50.100 57 114 2.4E-18 T 29-03-2018 Y880_RS16540 cf51a9a56bb4f549b892e31922692964 367 Gene3D G3DSA:2.40.50.100 160 353 5.2E-9 T 29-03-2018 Y880_RS16540 cf51a9a56bb4f549b892e31922692964 367 SUPERFAMILY SSF111369 47 276 3.53E-24 T 29-03-2018 Y880_RS16540 cf51a9a56bb4f549b892e31922692964 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 262 2.5E-20 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 39 115 3.6E-11 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 Gene3D G3DSA:2.40.30.10 137 255 8.6E-33 T 29-03-2018 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 Pfam PF00970 Oxidoreductase FAD-binding domain 203 265 1.2E-9 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 Gene3D G3DSA:3.40.50.80 256 400 6.8E-29 T 29-03-2018 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 Gene3D G3DSA:3.10.20.30 31 136 8.1E-22 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 SUPERFAMILY SSF54292 39 124 2.14E-23 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 Pfam PF00175 Oxidoreductase NAD-binding domain 276 385 2.4E-17 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 5 406 6.0E-230 T 29-03-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 3 406 65.2 T 29-03-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 PIRSF PIRSF000044 2 406 1.1E-231 T 29-03-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 SUPERFAMILY SSF52343 256 401 5.11E-37 T 29-03-2018 Y880_RS12970 5180b08b62e117bb656b83b3d83b7c5d 406 SUPERFAMILY SSF63380 105 270 3.08E-36 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 SUPERFAMILY SSF52540 74 359 6.17E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 SMART SM00487 20 222 5.7E-62 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 Pfam PF00271 Helicase conserved C-terminal domain 231 339 3.9E-28 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 Pfam PF00270 DEAD/DEAH box helicase 25 194 1.4E-47 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 Gene3D G3DSA:3.40.50.300 223 431 2.1E-42 T 29-03-2018 Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 SMART SM00490 258 339 8.0E-30 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS17995 edd24c5b6206cd90a79132887b812d60 449 Gene3D G3DSA:3.40.50.300 11 222 1.8E-59 T 29-03-2018 Y880_RS20390 d8b043b32f68e128b57490b817a9f3ec 579 SUPERFAMILY SSF56519 54 221 1.83E-44 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y880_RS20390 d8b043b32f68e128b57490b817a9f3ec 579 SUPERFAMILY SSF56601 174 561 8.54E-92 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS20390 d8b043b32f68e128b57490b817a9f3ec 579 Gene3D G3DSA:3.40.710.10 223 579 9.9E-91 T 29-03-2018 Y880_RS20390 d8b043b32f68e128b57490b817a9f3ec 579 Gene3D G3DSA:3.90.1310.10 27 222 6.2E-43 T 29-03-2018 Y880_RS20390 d8b043b32f68e128b57490b817a9f3ec 579 Pfam PF03717 Penicillin-binding Protein dimerisation domain 58 207 1.4E-17 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y880_RS20390 d8b043b32f68e128b57490b817a9f3ec 579 Pfam PF00905 Penicillin binding protein transpeptidase domain 247 546 1.7E-85 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 Pfam PF12833 Helix-turn-helix domain 252 329 7.9E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 312 6.1E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 312 328 6.1E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 SMART SM00342 245 328 1.7E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 Gene3D G3DSA:1.10.10.60 280 331 5.3E-17 T 29-03-2018 Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 Gene3D G3DSA:1.10.10.10 228 257 0.0088 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 Gene3D G3DSA:1.10.10.10 258 279 0.026 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 SUPERFAMILY SSF46689 281 330 1.43E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS02790 fa41dc266aeab990d8d7262a97732dc1 333 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 203 6.8E-48 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS21825 80a0df9442a72f85f1d829b601c514a6 381 Pfam PF03235 Protein of unknown function DUF262 41 190 1.2E-26 T 29-03-2018 IPR004919 Domain of unknown function DUF262 Y880_RS21825 80a0df9442a72f85f1d829b601c514a6 381 Gene3D G3DSA:3.90.1530.10 38 163 1.8E-4 T 29-03-2018 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 SUPERFAMILY SSF56935 112 795 1.83E-125 T 29-03-2018 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 Gene3D G3DSA:2.40.170.20 263 795 1.8E-85 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 SMART SM00965 56 107 1.4E-10 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 Pfam PF07660 Secretin and TonB N terminus short domain 58 106 1.7E-7 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 Pfam PF00593 TonB dependent receptor 317 793 2.3E-69 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 Gene3D G3DSA:2.170.130.10 107 249 2.4E-22 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 778 795 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 Pfam PF07715 TonB-dependent Receptor Plug Domain 145 242 3.4E-16 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS27375 8e06760c0f842c2b89e1ab2c3b4d99df 795 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 146 795 1.2E-108 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS27590 6aa280a809ab87846e5d805711850e8e 299 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 20 291 2.3E-55 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS27590 6aa280a809ab87846e5d805711850e8e 299 Gene3D G3DSA:3.60.130.10 15 296 6.1E-68 T 29-03-2018 Y880_RS27590 6aa280a809ab87846e5d805711850e8e 299 SUPERFAMILY SSF51197 19 293 2.24E-70 T 29-03-2018 Y880_RS21330 28fe6c266f4094b5ad536d08bc5f29a8 479 Gene3D G3DSA:1.20.1600.10 20 470 1.0E-93 T 29-03-2018 Y880_RS21330 28fe6c266f4094b5ad536d08bc5f29a8 479 Pfam PF02321 Outer membrane efflux protein 282 462 2.5E-32 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS21330 28fe6c266f4094b5ad536d08bc5f29a8 479 Pfam PF02321 Outer membrane efflux protein 64 253 1.4E-19 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS21330 28fe6c266f4094b5ad536d08bc5f29a8 479 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 464 4.2E-117 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS21330 28fe6c266f4094b5ad536d08bc5f29a8 479 SUPERFAMILY SSF56954 3 466 5.75E-104 T 29-03-2018 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 SUPERFAMILY SSF100934 507 603 1.01E-23 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 Gene3D G3DSA:1.20.1270.10 532 619 3.2E-21 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 1.2E-290 T 29-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 Gene3D G3DSA:3.30.420.40 193 276 1.7E-22 T 29-03-2018 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 633 36.888 T 29-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 Gene3D G3DSA:3.30.420.40 1 192 7.8E-82 T 29-03-2018 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 SUPERFAMILY SSF53067 4 183 8.85E-66 T 29-03-2018 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 Pfam PF00012 Hsp70 protein 4 603 7.2E-265 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 Gene3D G3DSA:2.60.34.10 390 531 2.6E-65 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 SUPERFAMILY SSF53067 187 382 2.07E-69 T 29-03-2018 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 388 407 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 334 350 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 365 385 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 54 62 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 31 43 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 138 158 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 3 16 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 469 485 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 PRINTS PR00301 70kDa heat shock protein signature 198 208 8.0E-81 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 SUPERFAMILY SSF100920 384 539 3.66E-60 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 Y880_RS22300 834816034bd2f88d8d86082145d2379a 637 Gene3D G3DSA:3.30.420.40 277 362 1.9E-22 T 29-03-2018 Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 Gene3D G3DSA:3.40.50.300 294 575 2.8E-60 T 29-03-2018 Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 388 402 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 SUPERFAMILY SSF160246 13 157 2.88E-20 T 29-03-2018 Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 SUPERFAMILY SSF52540 177 573 7.41E-96 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 52 158 1.9E-11 T 29-03-2018 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 SMART SM00382 321 442 1.2E-5 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 Pfam PF00437 Type II/IV secretion system protein 195 460 9.3E-81 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS10815 dc85df561d5c0e842103f7dd7e717a22 575 Gene3D G3DSA:3.30.450.90 158 293 3.8E-43 T 29-03-2018 Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 Pfam PF00206 Lyase 14 313 1.3E-65 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 SUPERFAMILY SSF48557 10 455 1.01E-104 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.2E-18 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 PRINTS PR00149 Fumarate lyase superfamily signature 252 279 1.2E-18 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 PRINTS PR00149 Fumarate lyase superfamily signature 295 311 1.2E-18 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.2E-18 T 29-03-2018 IPR000362 Fumarate lyase family Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 ProSitePatterns PS00163 Fumarate lyases signature. 295 304 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 Gene3D G3DSA:1.10.275.10 1 117 5.1E-42 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 6.9E-132 T 29-03-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 Gene3D G3DSA:1.10.40.30 392 446 2.0E-30 T 29-03-2018 Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 332 446 1.7E-50 T 29-03-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 Y880_RS10560 fa0afa72f58b9d7a0539e76ab9dff0fd 456 Gene3D G3DSA:1.20.200.10 118 391 9.9E-86 T 29-03-2018 Y880_RS09290 21060cab9c3d1903bfe75aafe1328a0a 159 Pfam PF08281 Sigma-70, region 4 97 149 2.4E-15 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09290 21060cab9c3d1903bfe75aafe1328a0a 159 Gene3D G3DSA:1.10.10.10 64 156 4.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09290 21060cab9c3d1903bfe75aafe1328a0a 159 Gene3D G3DSA:1.10.1740.10 1 63 2.6E-13 T 29-03-2018 Y880_RS09290 21060cab9c3d1903bfe75aafe1328a0a 159 SUPERFAMILY SSF88659 67 156 1.0E-15 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09290 21060cab9c3d1903bfe75aafe1328a0a 159 SUPERFAMILY SSF88946 2 82 5.1E-13 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09290 21060cab9c3d1903bfe75aafe1328a0a 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 152 3.6E-22 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09290 21060cab9c3d1903bfe75aafe1328a0a 159 Pfam PF04542 Sigma-70 region 2 2 65 1.3E-9 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS11290 c85e9e793ff00086a009a2d82f123802 295 SUPERFAMILY SSF46785 5 88 1.84E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11290 c85e9e793ff00086a009a2d82f123802 295 Pfam PF03466 LysR substrate binding domain 88 292 1.0E-25 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS11290 c85e9e793ff00086a009a2d82f123802 295 Gene3D G3DSA:3.40.190.10 82 203 4.3E-13 T 29-03-2018 Y880_RS11290 c85e9e793ff00086a009a2d82f123802 295 SUPERFAMILY SSF53850 89 293 2.17E-26 T 29-03-2018 Y880_RS11290 c85e9e793ff00086a009a2d82f123802 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.4E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS11290 c85e9e793ff00086a009a2d82f123802 295 Gene3D G3DSA:1.10.10.10 1 81 4.9E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 513 51.313 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 PIRSF PIRSF001492 1 514 1.3E-204 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 SUPERFAMILY SSF53649 5 79 2.36E-77 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 SUPERFAMILY SSF53649 312 512 2.36E-77 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 Gene3D G3DSA:3.40.720.10 300 514 5.8E-41 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 512 3.3E-245 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 SUPERFAMILY SSF64158 79 311 1.7E-83 T 29-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 Gene3D G3DSA:3.40.1450.10 79 299 1.4E-92 T 29-03-2018 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 84 300 7.4E-80 T 29-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y880_RS24225 e3ea57d3d695db92196407a6b8b17922 515 Pfam PF01676 Metalloenzyme superfamily 6 501 2.0E-79 T 29-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 312 340 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 Gene3D G3DSA:3.40.190.10 18 165 1.6E-17 T 29-03-2018 Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 268 5.6E-27 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 SUPERFAMILY SSF53955 435 453 9.23E-33 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 SUPERFAMILY SSF53955 246 400 9.23E-33 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 Pfam PF01464 Transglycosylase SLT domain 295 402 5.2E-20 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 SUPERFAMILY SSF53850 45 268 1.59E-37 T 29-03-2018 Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 Gene3D G3DSA:3.40.190.10 166 266 0.012 T 29-03-2018 Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 SMART SM00062 44 269 1.1E-30 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 Gene3D G3DSA:1.10.530.10 273 453 1.9E-32 T 29-03-2018 Y880_RS16990 4089d233bb909a0a8eb3cf623e52a58b 490 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 6 489 45.356 T 29-03-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 Y880_RS16635 dc0bc1f05ebed1f6c229d087c79cebb8 248 SUPERFAMILY SSF51219 6 235 3.14E-84 T 29-03-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain Y880_RS16635 dc0bc1f05ebed1f6c229d087c79cebb8 248 Pfam PF01987 Mitochondrial biogenesis AIM24 8 222 9.9E-65 T 29-03-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Y880_RS16635 dc0bc1f05ebed1f6c229d087c79cebb8 248 Gene3D G3DSA:3.60.160.10 1 248 3.9E-76 T 29-03-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Y880_RS16635 dc0bc1f05ebed1f6c229d087c79cebb8 248 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 6 224 1.6E-40 T 29-03-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Y880_RS29405 c0047c0cea17c48d9458016f4fc2ff0b 152 SUPERFAMILY SSF47175 23 150 5.89E-33 T 29-03-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 Y880_RS29405 c0047c0cea17c48d9458016f4fc2ff0b 152 PIRSF PIRSF000027 7 152 1.2E-46 T 29-03-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 Y880_RS29405 c0047c0cea17c48d9458016f4fc2ff0b 152 Pfam PF01322 Cytochrome C' 30 150 1.0E-31 T 29-03-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 Y880_RS29405 c0047c0cea17c48d9458016f4fc2ff0b 152 Gene3D G3DSA:1.20.120.10 26 152 1.6E-30 T 29-03-2018 Y880_RS20490 9cb7fd31b0800587fd887823378b397d 320 Gene3D G3DSA:1.25.40.10 82 314 9.4E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 Gene3D G3DSA:3.40.50.720 162 333 3.3E-32 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 SUPERFAMILY SSF51905 4 318 3.65E-56 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 SUPERFAMILY SSF55424 343 461 5.84E-29 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 Gene3D G3DSA:3.30.390.30 334 460 2.1E-31 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 325 1.2E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 1 464 73.11 T 29-03-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 344 455 5.0E-27 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 Gene3D G3DSA:3.50.50.60 3 161 9.0E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 340 361 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 420 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 3.2E-50 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PIRSF PIRSF000350 2 459 6.4E-68 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.9E-30 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 5.9E-30 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 5.9E-30 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 5.9E-30 T 29-03-2018 Y880_RS12955 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 5.9E-30 T 29-03-2018 Y880_RS24105 8c4af83850f5f41cdeaa0db6f76c98aa 200 Gene3D G3DSA:1.20.58.320 1 89 5.0E-22 T 29-03-2018 Y880_RS24105 8c4af83850f5f41cdeaa0db6f76c98aa 200 Gene3D G3DSA:1.25.40.10 90 200 1.1E-33 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS24105 8c4af83850f5f41cdeaa0db6f76c98aa 200 Pfam PF06041 Bacterial protein of unknown function (DUF924) 9 197 1.8E-57 T 29-03-2018 IPR010323 Protein of unknown function DUF924 Y880_RS24105 8c4af83850f5f41cdeaa0db6f76c98aa 200 SUPERFAMILY SSF48452 3 196 9.48E-56 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF46894 416 485 2.28E-20 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SMART SM00091 142 209 0.063 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SMART SM00091 267 336 0.033 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SMART SM00091 13 84 0.074 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:3.30.450.20 142 263 2.7E-20 T 29-03-2018 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:1.10.10.10 390 489 1.8E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SMART SM00421 423 480 3.8E-24 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Pfam PF13188 PAS domain 14 66 2.8E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:3.30.450.20 264 389 1.7E-17 T 29-03-2018 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:3.30.450.20 2 141 6.8E-13 T 29-03-2018 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Pfam PF13426 PAS domain 282 377 4.2E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Pfam PF13426 PAS domain 160 252 2.2E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF55785 255 377 1.15E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF55785 136 251 2.79E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 Pfam PF00196 Bacterial regulatory proteins, luxR family 426 480 8.8E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 262 1.6E-13 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 386 1.1E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF55785 10 135 4.54E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 426 440 2.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 456 468 2.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS29360 505810b31b7030193dc747b16aa22d2d 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 440 456 2.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 PRINTS PR00799 Aspartate aminotransferase signature 176 195 2.4E-34 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 PRINTS PR00799 Aspartate aminotransferase signature 274 299 2.4E-34 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 PRINTS PR00799 Aspartate aminotransferase signature 342 360 2.4E-34 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 PRINTS PR00799 Aspartate aminotransferase signature 207 219 2.4E-34 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 Pfam PF00155 Aminotransferase class I and II 29 393 2.4E-80 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 Gene3D G3DSA:3.40.640.10 77 300 1.4E-34 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 SUPERFAMILY SSF53383 1 397 8.78E-111 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 Gene3D G3DSA:3.90.1150.10 302 397 4.9E-22 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS01110 7ae54a520ee0291ef94aad99a0850e0c 399 Gene3D G3DSA:3.90.1150.10 2 76 6.7E-15 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS08685 1fee5e4b074eba3da9c4be8fd0b0774a 401 Gene3D G3DSA:1.20.1250.20 204 395 1.9E-14 T 29-03-2018 Y880_RS08685 1fee5e4b074eba3da9c4be8fd0b0774a 401 Pfam PF07690 Major Facilitator Superfamily 20 229 1.3E-8 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS08685 1fee5e4b074eba3da9c4be8fd0b0774a 401 SUPERFAMILY SSF103473 17 389 3.27E-29 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS08685 1fee5e4b074eba3da9c4be8fd0b0774a 401 Gene3D G3DSA:1.20.1250.20 6 203 5.5E-10 T 29-03-2018 Y880_RS28640 95200c2e7a68344b67e480be156cb6a5 382 SUPERFAMILY SSF52540 4 337 3.43E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28640 95200c2e7a68344b67e480be156cb6a5 382 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 344 1.8E-135 T 29-03-2018 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 Y880_RS28640 95200c2e7a68344b67e480be156cb6a5 382 Gene3D G3DSA:3.30.450.90 1 99 1.5E-20 T 29-03-2018 Y880_RS28640 95200c2e7a68344b67e480be156cb6a5 382 Pfam PF00437 Type II/IV secretion system protein 112 269 1.7E-35 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS28640 95200c2e7a68344b67e480be156cb6a5 382 Gene3D G3DSA:3.40.50.300 273 347 1.7E-13 T 29-03-2018 Y880_RS28640 95200c2e7a68344b67e480be156cb6a5 382 Gene3D G3DSA:3.40.50.300 115 272 8.5E-23 T 29-03-2018 Y880_RS03070 1506b64aec210e6d7a57647be3b1f258 503 Pfam PF07690 Major Facilitator Superfamily 19 412 1.7E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS03070 1506b64aec210e6d7a57647be3b1f258 503 Gene3D G3DSA:1.20.1250.20 262 503 5.0E-25 T 29-03-2018 Y880_RS03070 1506b64aec210e6d7a57647be3b1f258 503 SUPERFAMILY SSF103473 7 192 6.67E-60 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03070 1506b64aec210e6d7a57647be3b1f258 503 SUPERFAMILY SSF103473 251 422 6.67E-60 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03070 1506b64aec210e6d7a57647be3b1f258 503 SUPERFAMILY SSF103473 476 500 6.67E-60 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03070 1506b64aec210e6d7a57647be3b1f258 503 Gene3D G3DSA:1.20.1250.20 2 203 5.1E-33 T 29-03-2018 Y880_RS03070 1506b64aec210e6d7a57647be3b1f258 503 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 494 3.6E-107 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 TIGRFAM TIGR00595 priA: primosomal protein N' 225 736 5.5E-184 T 29-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 SUPERFAMILY SSF52540 200 383 1.33E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 Pfam PF00270 DEAD/DEAH box helicase 207 367 1.8E-14 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 SMART SM00490 496 593 2.0E-9 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 SMART SM00487 199 395 2.7E-25 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 Gene3D G3DSA:3.40.50.300 404 617 4.3E-21 T 29-03-2018 Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 SUPERFAMILY SSF52540 499 616 1.78E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 SUPERFAMILY SSF52540 413 438 1.78E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 Gene3D G3DSA:3.40.50.300 200 365 3.7E-29 T 29-03-2018 Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 Hamap MF_00983 Probable primosomal protein N' [priA]. 8 738 25.209 T 29-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Y880_RS23805 d91f09649d39a784127e4d1c12f2cd1d 739 Pfam PF00271 Helicase conserved C-terminal domain 522 592 4.6E-6 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS14085 ed0f41333c8b2430b8dcc2e045d26047 264 SMART SM00382 34 223 3.5E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS14085 ed0f41333c8b2430b8dcc2e045d26047 264 Gene3D G3DSA:3.40.50.300 6 261 2.7E-60 T 29-03-2018 Y880_RS14085 ed0f41333c8b2430b8dcc2e045d26047 264 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS14085 ed0f41333c8b2430b8dcc2e045d26047 264 Pfam PF00005 ABC transporter 27 175 1.3E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS14085 ed0f41333c8b2430b8dcc2e045d26047 264 SUPERFAMILY SSF52540 9 236 4.33E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20095 91edd6774f8b9cfeb803151ed8b58082 329 Gene3D G3DSA:3.40.50.720 1 328 9.4E-63 T 29-03-2018 Y880_RS20095 91edd6774f8b9cfeb803151ed8b58082 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 227 2.2E-33 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS20095 91edd6774f8b9cfeb803151ed8b58082 329 SUPERFAMILY SSF51735 1 263 1.33E-68 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS20095 91edd6774f8b9cfeb803151ed8b58082 329 SUPERFAMILY SSF51735 293 327 1.33E-68 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 3.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 3.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 3.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 Gene3D G3DSA:1.10.10.10 1 79 5.9E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 Gene3D G3DSA:3.40.190.10 173 261 1.3E-15 T 29-03-2018 Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 SUPERFAMILY SSF53850 82 285 8.22E-34 T 29-03-2018 Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 Gene3D G3DSA:3.40.190.10 81 172 3.4E-17 T 29-03-2018 Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 SUPERFAMILY SSF46785 3 105 6.96E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 61 6.4E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00700 07602d4b52ce692c87dd85ca2e5c612b 294 Pfam PF03466 LysR substrate binding domain 81 283 1.1E-39 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS00280 5648ac9296b02fe17518ef4ac06a1f04 358 Pfam PF09925 Predicted membrane protein (DUF2157) 52 181 1.5E-15 T 29-03-2018 IPR018677 Domain of unknown function DUF2157 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.018 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.0E-40 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.0E-40 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.0E-40 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 2.0E-15 T 29-03-2018 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.6E-51 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 Gene3D G3DSA:1.10.1900.20 55 116 6.1E-28 T 29-03-2018 IPR035566 Ribosomal protein L20 C-terminal domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 SUPERFAMILY SSF74731 3 116 2.75E-49 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS11160 03c6f76219412bef5dc08bce94981067 118 Pfam PF00453 Ribosomal protein L20 3 109 1.0E-48 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS07260 cf90b2172f069e44a976a861b0e85099 210 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 93 171 1.2E-8 T 29-03-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 Y880_RS07260 cf90b2172f069e44a976a861b0e85099 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 8.4E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS07260 cf90b2172f069e44a976a861b0e85099 210 SUPERFAMILY SSF48498 82 198 5.48E-12 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS07260 cf90b2172f069e44a976a861b0e85099 210 SUPERFAMILY SSF46689 3 70 1.1E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS07260 cf90b2172f069e44a976a861b0e85099 210 Gene3D G3DSA:1.10.357.10 1 208 9.2E-41 T 29-03-2018 Y880_RS07260 cf90b2172f069e44a976a861b0e85099 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.5E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS07260 cf90b2172f069e44a976a861b0e85099 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 7.5E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS25910 4f7897261f0f01e2012a90f6f898dc89 381 SUPERFAMILY SSF53756 1 368 5.89E-73 T 29-03-2018 Y880_RS25910 4f7897261f0f01e2012a90f6f898dc89 381 Pfam PF13439 Glycosyltransferase Family 4 15 172 2.0E-13 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS25910 4f7897261f0f01e2012a90f6f898dc89 381 Pfam PF00534 Glycosyl transferases group 1 189 345 2.1E-32 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS25910 4f7897261f0f01e2012a90f6f898dc89 381 Gene3D G3DSA:3.40.50.2000 152 352 9.9E-40 T 29-03-2018 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 Gene3D G3DSA:3.90.176.10 214 410 2.6E-25 T 29-03-2018 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 Pfam PF03496 ADP-ribosyltransferase exoenzyme 243 428 9.5E-37 T 29-03-2018 IPR003540 ADP ribosyltransferase GO:0005576|GO:0009405 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 SUPERFAMILY SSF56399 233 423 5.76E-36 T 29-03-2018 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 Pfam PF03545 Yersinia virulence determinant (YopE) 129 198 1.2E-32 T 29-03-2018 IPR014773 Virulence factor YopE uncharacterised domain Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 Gene3D G3DSA:1.20.120.260 100 213 5.7E-45 T 29-03-2018 IPR014773 Virulence factor YopE uncharacterised domain Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 39 56 3.6E-40 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 212 229 3.6E-40 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 23 36 3.6E-40 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 84 101 3.6E-40 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 129 146 3.6E-40 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 178 196 3.6E-40 T 29-03-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y880_RS17415 25ed3326bce750ea99418aaca7722218 453 SUPERFAMILY SSF47233 95 229 2.35E-52 T 29-03-2018 IPR014773 Virulence factor YopE uncharacterised domain Y880_RS14150 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Gene3D G3DSA:1.10.10.10 1 87 1.1E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14150 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Gene3D G3DSA:3.40.190.10 181 261 3.6E-12 T 29-03-2018 Y880_RS14150 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS14150 4c41bf983e8dc9617c02dfbcf9f0b87d 309 SUPERFAMILY SSF53850 92 293 3.98E-27 T 29-03-2018 Y880_RS14150 4c41bf983e8dc9617c02dfbcf9f0b87d 309 SUPERFAMILY SSF46785 5 87 1.03E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14150 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Pfam PF03466 LysR substrate binding domain 92 290 1.1E-25 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS14150 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Gene3D G3DSA:3.40.190.10 94 180 3.2E-8 T 29-03-2018 Y880_RS22215 5ee64c2c3e08d22c2eb9b9754d891288 152 Gene3D G3DSA:2.30.30.180 88 148 1.5E-14 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal Y880_RS22215 5ee64c2c3e08d22c2eb9b9754d891288 152 Pfam PF17384 RimP C-terminal SH3 domain 86 151 1.6E-20 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal Y880_RS22215 5ee64c2c3e08d22c2eb9b9754d891288 152 SUPERFAMILY SSF74942 84 151 1.02E-17 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal Y880_RS22215 5ee64c2c3e08d22c2eb9b9754d891288 152 Pfam PF02576 RimP N-terminal domain 11 83 1.8E-31 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Y880_RS22215 5ee64c2c3e08d22c2eb9b9754d891288 152 SUPERFAMILY SSF75420 3 83 4.18E-27 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Y880_RS22215 5ee64c2c3e08d22c2eb9b9754d891288 152 Gene3D G3DSA:3.30.300.70 1 80 4.1E-31 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Y880_RS22215 5ee64c2c3e08d22c2eb9b9754d891288 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 25.859 T 29-03-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 Y880_RS02610 43699062fb91cc85766a1abb966efb76 393 Gene3D G3DSA:1.20.1090.10 196 393 4.1E-49 T 29-03-2018 Y880_RS02610 43699062fb91cc85766a1abb966efb76 393 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 379 6.2E-109 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y880_RS02610 43699062fb91cc85766a1abb966efb76 393 SUPERFAMILY SSF56796 5 390 5.1E-104 T 29-03-2018 Y880_RS02610 43699062fb91cc85766a1abb966efb76 393 Gene3D G3DSA:3.40.50.1970 3 195 2.7E-38 T 29-03-2018 Y880_RS02610 43699062fb91cc85766a1abb966efb76 393 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 184 212 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y880_RS16770 f0eed2cd9e3d8d820c4ec28cd3681434 368 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 340 1.2E-71 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS16770 f0eed2cd9e3d8d820c4ec28cd3681434 368 Gene3D G3DSA:3.20.20.70 1 358 3.2E-122 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS16770 f0eed2cd9e3d8d820c4ec28cd3681434 368 SUPERFAMILY SSF51395 1 356 1.89E-118 T 29-03-2018 Y880_RS04110 e80f32f15158f9f4c63a7d0809846cb1 143 Gene3D G3DSA:3.40.630.30 1 143 2.3E-26 T 29-03-2018 Y880_RS04110 e80f32f15158f9f4c63a7d0809846cb1 143 SUPERFAMILY SSF55729 1 142 1.89E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS04110 e80f32f15158f9f4c63a7d0809846cb1 143 Pfam PF13673 Acetyltransferase (GNAT) domain 50 130 3.0E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 Gene3D G3DSA:1.20.5.710 3 32 3.9E-14 T 29-03-2018 Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 SUPERFAMILY SSF54736 51 122 2.62E-24 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 24.996 T 29-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 SUPERFAMILY SSF48300 4 58 2.22E-15 T 29-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 2.9E-29 T 29-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 Gene3D G3DSA:3.30.1390.10 49 122 8.4E-30 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 2.5E-17 T 29-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 95 2.0E-13 T 29-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19610 3c65321985d4b2f3d82277a932b27a0a 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 1.3E-45 T 29-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS09110 954544a9f01f1ffa0296526dbe0815f1 384 Pfam PF03969 AFG1-like ATPase 316 376 6.4E-14 T 29-03-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y880_RS09110 954544a9f01f1ffa0296526dbe0815f1 384 Pfam PF03969 AFG1-like ATPase 11 293 4.3E-82 T 29-03-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y880_RS09110 954544a9f01f1ffa0296526dbe0815f1 384 Gene3D G3DSA:3.40.50.300 28 189 9.0E-14 T 29-03-2018 Y880_RS09110 954544a9f01f1ffa0296526dbe0815f1 384 SUPERFAMILY SSF52540 47 179 1.13E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 381 1.1E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 1.1E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 367 1.1E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 SUPERFAMILY SSF47384 191 274 4.51E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 321 424 1.7E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 Gene3D G3DSA:3.30.565.10 277 428 2.6E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 SMART SM00304 155 207 6.9E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 SMART SM00387 318 428 2.5E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 SMART SM00388 208 273 2.6E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 SUPERFAMILY SSF55874 263 424 2.75E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 Pfam PF00672 HAMP domain 161 203 3.2E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 273 2.0E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 SUPERFAMILY SSF158472 158 206 3.4E-6 T 29-03-2018 Y880_RS06110 210966b9eec25f59cb14f8f75f7b9373 428 Gene3D G3DSA:1.10.287.130 198 269 4.4E-10 T 29-03-2018 Y880_RS19525 0f172d6b2e1dfd324cd372b9538696e4 122 SMART SM01374 1 122 4.5E-86 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y880_RS19525 0f172d6b2e1dfd324cd372b9538696e4 122 Gene3D G3DSA:2.40.150.20 1 122 2.1E-53 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y880_RS19525 0f172d6b2e1dfd324cd372b9538696e4 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 4.6E-55 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y880_RS19525 0f172d6b2e1dfd324cd372b9538696e4 122 SUPERFAMILY SSF50193 1 122 3.92E-52 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y880_RS19525 0f172d6b2e1dfd324cd372b9538696e4 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.771 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y880_RS19525 0f172d6b2e1dfd324cd372b9538696e4 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 2.6E-58 T 29-03-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 Y880_RS19525 0f172d6b2e1dfd324cd372b9538696e4 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 29-03-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS11520 13b24ca852c0702296e3baca83adc9cb 307 Gene3D G3DSA:3.20.20.70 2 307 2.4E-113 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS11520 13b24ca852c0702296e3baca83adc9cb 307 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 301 1.1E-96 T 29-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 Y880_RS11520 13b24ca852c0702296e3baca83adc9cb 307 TIGRFAM TIGR00874 talAB: transaldolase 4 303 8.9E-134 T 29-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 Y880_RS11520 13b24ca852c0702296e3baca83adc9cb 307 SUPERFAMILY SSF51569 1 305 1.15E-109 T 29-03-2018 Y880_RS11520 13b24ca852c0702296e3baca83adc9cb 307 Hamap MF_00492 Transaldolase [tal]. 2 307 50.203 T 29-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 Y880_RS11520 13b24ca852c0702296e3baca83adc9cb 307 ProSitePatterns PS00958 Transaldolase active site. 122 139 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 Y880_RS11520 13b24ca852c0702296e3baca83adc9cb 307 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 Gene3D G3DSA:1.10.10.10 144 227 3.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 Pfam PF00027 Cyclic nucleotide-binding domain 35 121 7.2E-20 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 SUPERFAMILY SSF46785 152 225 1.82E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 SUPERFAMILY SSF51206 11 141 1.14E-30 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 SMART SM00419 170 218 3.0E-8 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 SMART SM00100 16 134 7.3E-13 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 Gene3D G3DSA:2.60.120.10 1 143 7.0E-26 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS28000 98aa669de19883337fb26f460a82dda3 228 Pfam PF13545 Crp-like helix-turn-helix domain 154 224 3.4E-17 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS12895 7b60f349e2edc62aff1b7b793a8b2503 61 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.286 T 29-03-2018 IPR005651 Uncharacterised protein family UPF0434/Trm112 Y880_RS12895 7b60f349e2edc62aff1b7b793a8b2503 61 Gene3D G3DSA:2.20.25.10 8 61 4.9E-21 T 29-03-2018 Y880_RS12895 7b60f349e2edc62aff1b7b793a8b2503 61 SUPERFAMILY SSF158997 1 54 1.05E-20 T 29-03-2018 Y880_RS12895 7b60f349e2edc62aff1b7b793a8b2503 61 Pfam PF03966 Trm112p-like protein 2 41 4.1E-10 T 29-03-2018 IPR005651 Uncharacterised protein family UPF0434/Trm112 Y880_RS24615 1b1937c4fe334f0624d67aeb1bf17c1d 527 Pfam PF04262 Glutamate-cysteine ligase 10 377 2.9E-169 T 29-03-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y880_RS24615 1b1937c4fe334f0624d67aeb1bf17c1d 527 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 517 4.4E-270 T 29-03-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y880_RS24615 1b1937c4fe334f0624d67aeb1bf17c1d 527 SUPERFAMILY SSF55931 8 514 5.56E-196 T 29-03-2018 Y880_RS24615 1b1937c4fe334f0624d67aeb1bf17c1d 527 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 527 229.009 T 29-03-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y880_RS24615 1b1937c4fe334f0624d67aeb1bf17c1d 527 Gene3D G3DSA:3.40.50.300 156 514 8.1E-4 T 29-03-2018 Y880_RS25150 965fa33e034d919eb61ceeae65b7af40 855 Pfam PF11739 Dicarboxylate transport 634 839 1.2E-59 T 29-03-2018 IPR021730 Dicarboxylate transport Y880_RS15940 c93ae1a6db61a01946d996340d62cd3d 259 SUPERFAMILY SSF51556 3 258 1.45E-79 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS15940 c93ae1a6db61a01946d996340d62cd3d 259 PIRSF PIRSF005902 1 259 1.7E-70 T 29-03-2018 IPR001130 TatD family GO:0016788 Y880_RS15940 c93ae1a6db61a01946d996340d62cd3d 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y880_RS15940 c93ae1a6db61a01946d996340d62cd3d 259 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 193 209 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y880_RS15940 c93ae1a6db61a01946d996340d62cd3d 259 Gene3D G3DSA:3.20.20.140 1 259 1.7E-77 T 29-03-2018 Y880_RS15940 c93ae1a6db61a01946d996340d62cd3d 259 Pfam PF01026 TatD related DNase 4 256 2.2E-66 T 29-03-2018 IPR001130 TatD family GO:0016788 Y880_RS28150 186a1722b6e5d5908d5db8aebe979bb5 795 Gene3D G3DSA:1.10.439.10 30 196 5.8E-52 T 29-03-2018 IPR023343 Penicillin amidase type, domain1 GO:0016811 Y880_RS28150 186a1722b6e5d5908d5db8aebe979bb5 795 Pfam PF01804 Penicillin amidase 42 782 1.2E-201 T 29-03-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y880_RS28150 186a1722b6e5d5908d5db8aebe979bb5 795 SUPERFAMILY SSF56235 39 794 5.14E-214 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS28150 186a1722b6e5d5908d5db8aebe979bb5 795 PIRSF PIRSF001227 1 794 1.7E-170 T 29-03-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y880_RS28150 186a1722b6e5d5908d5db8aebe979bb5 795 Gene3D G3DSA:3.60.20.10 248 626 5.8E-81 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS28150 186a1722b6e5d5908d5db8aebe979bb5 795 Gene3D G3DSA:3.60.20.10 627 785 1.2E-26 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS23550 e60a51c7e1e54d2f05a013b44cb7d907 472 Gene3D G3DSA:3.40.50.10320 177 465 2.1E-28 T 29-03-2018 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 Y880_RS23550 e60a51c7e1e54d2f05a013b44cb7d907 472 Pfam PF02585 GlcNAc-PI de-N-acetylase 183 352 3.2E-13 T 29-03-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 Y880_RS23550 e60a51c7e1e54d2f05a013b44cb7d907 472 SUPERFAMILY SSF102588 179 276 1.27E-32 T 29-03-2018 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 Y880_RS23550 e60a51c7e1e54d2f05a013b44cb7d907 472 SUPERFAMILY SSF102588 303 447 1.27E-32 T 29-03-2018 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 Y880_RS20820 9c6bb7c000a4db6260199b50bfcf4ce8 531 Gene3D G3DSA:3.40.190.10 199 294 6.5E-28 T 29-03-2018 Y880_RS20820 9c6bb7c000a4db6260199b50bfcf4ce8 531 PIRSF PIRSF002741 16 530 4.1E-104 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y880_RS20820 9c6bb7c000a4db6260199b50bfcf4ce8 531 Gene3D G3DSA:3.90.76.10 33 198 9.9E-35 T 29-03-2018 Y880_RS20820 9c6bb7c000a4db6260199b50bfcf4ce8 531 Gene3D G3DSA:3.10.105.10 295 502 1.0E-61 T 29-03-2018 Y880_RS20820 9c6bb7c000a4db6260199b50bfcf4ce8 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 448 2.2E-96 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain Y880_RS20820 9c6bb7c000a4db6260199b50bfcf4ce8 531 SUPERFAMILY SSF53850 25 528 9.62E-147 T 29-03-2018 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 137 157 5.6E-54 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 320 332 5.6E-54 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 234 251 5.6E-54 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 116 128 5.6E-54 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 177 201 5.6E-54 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 212 229 5.6E-54 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 SMART SM00228 280 362 1.3E-12 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 Gene3D G3DSA:2.30.42.10 275 383 1.2E-23 T 29-03-2018 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 SUPERFAMILY SSF50494 51 272 6.4E-63 T 29-03-2018 IPR009003 Peptidase S1, PA clan Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 SUPERFAMILY SSF50156 238 363 1.71E-22 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 Pfam PF13180 PDZ domain 280 370 2.4E-15 T 29-03-2018 IPR001478 PDZ domain GO:0005515 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 Gene3D G3DSA:2.40.10.10 52 157 1.9E-29 T 29-03-2018 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 Pfam PF13365 Trypsin-like peptidase domain 107 241 1.9E-30 T 29-03-2018 Y880_RS20535 d66c1fe1bab2f94c34632873d8fcabab 389 Gene3D G3DSA:2.40.10.10 158 269 6.0E-42 T 29-03-2018 Y880_RS18780 40f2c8fa5e457e6aab477e31f76c8fd7 155 Gene3D G3DSA:1.10.238.10 96 119 7.0E-7 T 29-03-2018 Y880_RS18780 40f2c8fa5e457e6aab477e31f76c8fd7 155 Gene3D G3DSA:1.10.238.10 120 152 0.015 T 29-03-2018 Y880_RS18780 40f2c8fa5e457e6aab477e31f76c8fd7 155 Gene3D G3DSA:1.10.238.10 32 95 3.3E-4 T 29-03-2018 Y880_RS18780 40f2c8fa5e457e6aab477e31f76c8fd7 155 ProSitePatterns PS00018 EF-hand calcium-binding domain. 88 100 - T 29-03-2018 IPR018247 EF-Hand 1, calcium-binding site Y880_RS18780 40f2c8fa5e457e6aab477e31f76c8fd7 155 Pfam PF13202 EF hand 84 103 0.0012 T 29-03-2018 IPR002048 EF-hand domain GO:0005509 Y880_RS18780 40f2c8fa5e457e6aab477e31f76c8fd7 155 Pfam PF13202 EF hand 111 128 0.0067 T 29-03-2018 IPR002048 EF-hand domain GO:0005509 Y880_RS18780 40f2c8fa5e457e6aab477e31f76c8fd7 155 SUPERFAMILY SSF47473 84 134 1.02E-7 T 29-03-2018 IPR011992 EF-hand domain pair Y880_RS16795 394ef27983cf094a05e6bb43dd40d9e7 1746 SUPERFAMILY SSF52540 1280 1437 4.86E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16795 394ef27983cf094a05e6bb43dd40d9e7 1746 Pfam PF07728 AAA domain (dynein-related subfamily) 1292 1415 5.6E-5 T 29-03-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Y880_RS16795 394ef27983cf094a05e6bb43dd40d9e7 1746 Gene3D G3DSA:3.40.50.300 1021 1438 4.5E-11 T 29-03-2018 Y880_RS16795 394ef27983cf094a05e6bb43dd40d9e7 1746 Pfam PF12458 ATPase involved in DNA repair 38 485 2.2E-199 T 29-03-2018 IPR020958 DUF3686 Y880_RS28600 d0ac014d0a4b0140b2de5cbd2c8406da 206 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 2 194 8.6E-91 T 29-03-2018 IPR010743 Methionine biosynthesis MetW Y880_RS28600 d0ac014d0a4b0140b2de5cbd2c8406da 206 Pfam PF07021 Methionine biosynthesis protein MetW 2 194 9.0E-92 T 29-03-2018 IPR010743 Methionine biosynthesis MetW Y880_RS28600 d0ac014d0a4b0140b2de5cbd2c8406da 206 SUPERFAMILY SSF53335 3 192 7.86E-36 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS28600 d0ac014d0a4b0140b2de5cbd2c8406da 206 Gene3D G3DSA:3.40.50.150 1 188 2.5E-22 T 29-03-2018 Y880_RS05075 82451d9b9cfbce02c67044fbd97e4f87 146 Pfam PF01638 HxlR-like helix-turn-helix 20 104 2.8E-19 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type Y880_RS05075 82451d9b9cfbce02c67044fbd97e4f87 146 Gene3D G3DSA:1.10.10.10 2 146 7.0E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05075 82451d9b9cfbce02c67044fbd97e4f87 146 SUPERFAMILY SSF46785 6 143 9.66E-39 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 Gene3D G3DSA:1.10.3650.10 363 434 6.0E-31 T 29-03-2018 Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 435 5.6E-30 T 29-03-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 SUPERFAMILY SSF54862 1 487 8.37E-178 T 29-03-2018 Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 Gene3D G3DSA:3.30.70.20 236 362 4.6E-29 T 29-03-2018 Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 Gene3D G3DSA:3.30.70.20 198 235 9.8E-20 T 29-03-2018 Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 490 0.0 T 29-03-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 Pfam PF13247 4Fe-4S dicluster domain 175 271 8.0E-38 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS17580 2c26f2cfc5d8690160053118267388eb 513 Gene3D G3DSA:3.30.70.20 5 197 5.2E-29 T 29-03-2018 Y880_RS27055 7fa439856f827fb42edfd906d73a1b12 348 Pfam PF06996 Type VI secretion, TssG 21 319 1.9E-107 T 29-03-2018 IPR010732 Type VI secretion, TssG-like Y880_RS27055 7fa439856f827fb42edfd906d73a1b12 348 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 22 319 9.7E-111 T 29-03-2018 IPR010732 Type VI secretion, TssG-like Y880_RS07540 7f689903f9cf29ba771f350fe0edba44 91 Pfam PF00795 Carbon-nitrogen hydrolase 1 41 8.1E-6 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS07540 7f689903f9cf29ba771f350fe0edba44 91 Gene3D G3DSA:3.60.110.10 1 76 1.6E-12 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS07540 7f689903f9cf29ba771f350fe0edba44 91 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 10 30 - T 29-03-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site Y880_RS07540 7f689903f9cf29ba771f350fe0edba44 91 SUPERFAMILY SSF56317 1 47 4.84E-14 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS26780 fff95ed1e230e58aefce34036f943fa9 71 Pfam PF07311 Dodecin 6 68 3.1E-31 T 29-03-2018 IPR009923 Dodecin Y880_RS26780 fff95ed1e230e58aefce34036f943fa9 71 Gene3D G3DSA:3.30.1660.10 5 69 2.6E-32 T 29-03-2018 IPR025543 Dodecin-like Y880_RS26780 fff95ed1e230e58aefce34036f943fa9 71 SUPERFAMILY SSF89807 6 69 1.44E-27 T 29-03-2018 IPR009923 Dodecin Y880_RS04580 c7655eb36a6d8f5e3e73f93a17c4a7c9 434 Gene3D G3DSA:2.30.40.10 5 80 1.4E-11 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS04580 c7655eb36a6d8f5e3e73f93a17c4a7c9 434 Gene3D G3DSA:3.20.20.140 81 373 2.5E-77 T 29-03-2018 Y880_RS04580 c7655eb36a6d8f5e3e73f93a17c4a7c9 434 SUPERFAMILY SSF51556 71 374 4.0E-104 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS04580 c7655eb36a6d8f5e3e73f93a17c4a7c9 434 Pfam PF01979 Amidohydrolase family 69 430 8.9E-71 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS04580 c7655eb36a6d8f5e3e73f93a17c4a7c9 434 SUPERFAMILY SSF51338 29 88 1.94E-10 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS04580 c7655eb36a6d8f5e3e73f93a17c4a7c9 434 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 28 427 2.4E-186 T 29-03-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 Y880_RS03755 5669c9f05667eea726eea15a869cc5a7 214 Gene3D G3DSA:1.10.10.60 5 70 9.3E-18 T 29-03-2018 Y880_RS03755 5669c9f05667eea726eea15a869cc5a7 214 SUPERFAMILY SSF46689 8 78 1.55E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03755 5669c9f05667eea726eea15a869cc5a7 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 7.5E-16 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03755 5669c9f05667eea726eea15a869cc5a7 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 3.5E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03755 5669c9f05667eea726eea15a869cc5a7 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 3.5E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03755 5669c9f05667eea726eea15a869cc5a7 214 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 155 205 5.9E-8 T 29-03-2018 Y880_RS03755 5669c9f05667eea726eea15a869cc5a7 214 Gene3D G3DSA:1.10.357.10 71 211 3.2E-16 T 29-03-2018 Y880_RS20565 aa9037045a395ff1f8132f3d9898f15a 102 Pfam PF13466 STAS domain 14 94 2.2E-16 T 29-03-2018 IPR002645 STAS domain Y880_RS20565 aa9037045a395ff1f8132f3d9898f15a 102 SUPERFAMILY SSF52091 7 100 1.9E-16 T 29-03-2018 IPR002645 STAS domain Y880_RS20565 aa9037045a395ff1f8132f3d9898f15a 102 Gene3D G3DSA:3.30.750.24 13 102 7.2E-10 T 29-03-2018 IPR002645 STAS domain Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 SUPERFAMILY SSF50331 255 381 1.25E-15 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 SUPERFAMILY SSF52540 22 260 4.91E-87 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 Pfam PF00005 ABC transporter 39 180 9.6E-38 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 Pfam PF08402 TOBE domain 300 382 1.4E-16 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 53 382 8.1E-129 T 29-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 Gene3D G3DSA:3.40.50.300 18 252 2.9E-74 T 29-03-2018 Y880_RS28135 64375893897fefd4c7a79411f630f6a8 384 SMART SM00382 47 230 1.2E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 Gene3D G3DSA:1.10.10.10 5 87 3.2E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 SUPERFAMILY SSF46785 4 81 6.56E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 Gene3D G3DSA:3.40.190.10 176 263 3.2E-21 T 29-03-2018 Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 Gene3D G3DSA:3.40.190.10 91 175 1.6E-15 T 29-03-2018 Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 Pfam PF03466 LysR substrate binding domain 92 292 1.0E-40 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 SUPERFAMILY SSF53850 94 295 3.8E-39 T 29-03-2018 Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 1.1E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 5.9E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 5.9E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS28915 47bf9a947eae5e36e9634e18c9de28ff 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 5.9E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 ProSitePatterns PS00221 MIP family signature. 69 77 - T 29-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 TIGRFAM TIGR00861 MIP: MIP family channel proteins 16 252 6.4E-68 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 Pfam PF00230 Major intrinsic protein 9 251 9.6E-66 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 SUPERFAMILY SSF81338 10 260 5.49E-78 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 Gene3D G3DSA:1.20.1080.10 4 262 4.4E-79 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 PRINTS PR00783 Major intrinsic protein family signature 51 75 1.1E-49 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 PRINTS PR00783 Major intrinsic protein family signature 154 172 1.1E-49 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 PRINTS PR00783 Major intrinsic protein family signature 187 209 1.1E-49 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 PRINTS PR00783 Major intrinsic protein family signature 12 31 1.1E-49 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 PRINTS PR00783 Major intrinsic protein family signature 237 257 1.1E-49 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16045 804d987aec6e423920bf04a6f666297a 279 PRINTS PR00783 Major intrinsic protein family signature 88 107 1.1E-49 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS16545 857800701ddeb1e142a67ac626581305 212 SUPERFAMILY SSF46689 12 92 1.5E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS16545 857800701ddeb1e142a67ac626581305 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.6E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16545 857800701ddeb1e142a67ac626581305 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.6E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16545 857800701ddeb1e142a67ac626581305 212 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 154 207 3.3E-12 T 29-03-2018 Y880_RS16545 857800701ddeb1e142a67ac626581305 212 Gene3D G3DSA:1.10.10.60 2 68 1.6E-18 T 29-03-2018 Y880_RS16545 857800701ddeb1e142a67ac626581305 212 Gene3D G3DSA:1.10.357.10 69 212 6.1E-31 T 29-03-2018 Y880_RS16545 857800701ddeb1e142a67ac626581305 212 SUPERFAMILY SSF48498 91 202 8.16E-11 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS16545 857800701ddeb1e142a67ac626581305 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 1.4E-16 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 Pfam PF13416 Bacterial extracellular solute-binding protein 39 316 6.9E-30 T 29-03-2018 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 254 273 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 86 99 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 27 43 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 43 64 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 299 325 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 117 133 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 145 159 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 167 186 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 70 84 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 204 223 1.1E-40 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 SUPERFAMILY SSF53850 22 352 1.4E-83 T 29-03-2018 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 Gene3D G3DSA:3.40.190.10 22 353 4.8E-45 T 29-03-2018 Y880_RS16200 d49c2844304afdf044cecb890dab721e 354 PIRSF PIRSF019574 1 354 6.4E-99 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS00835 eb083d5a1e0ad76557b1f5356f631b13 551 Gene3D G3DSA:1.20.1170.10 1 105 6.2E-5 T 29-03-2018 Y880_RS00835 eb083d5a1e0ad76557b1f5356f631b13 551 Gene3D G3DSA:1.20.5.340 223 367 7.2E-14 T 29-03-2018 Y880_RS00835 eb083d5a1e0ad76557b1f5356f631b13 551 Gene3D G3DSA:1.20.1000.10 106 222 4.0E-4 T 29-03-2018 Y880_RS00835 eb083d5a1e0ad76557b1f5356f631b13 551 Pfam PF02646 RmuC family 206 501 5.7E-92 T 29-03-2018 IPR003798 DNA recombination RmuC Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 Pfam PF01965 DJ-1/PfpI family 44 197 1.9E-17 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 Gene3D G3DSA:3.40.50.880 23 223 3.4E-34 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 Gene3D G3DSA:1.10.10.60 286 333 9.9E-10 T 29-03-2018 Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 Gene3D G3DSA:1.10.10.60 224 285 1.1E-10 T 29-03-2018 Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 SUPERFAMILY SSF46689 232 282 1.61E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 Pfam PF12833 Helix-turn-helix domain 254 329 2.4E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 SUPERFAMILY SSF46689 284 330 2.51E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 SUPERFAMILY SSF52317 29 214 4.01E-36 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS19195 4cc1e110c4384a7c65b8231c30f7ac4f 340 SMART SM00342 248 331 3.8E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS26425 b4438bc7555fc8c08b70be5882f3342e 207 SUPERFAMILY SSF56784 17 198 4.75E-16 T 29-03-2018 IPR023214 HAD-like domain Y880_RS26425 b4438bc7555fc8c08b70be5882f3342e 207 Pfam PF12710 haloacid dehalogenase-like hydrolase 17 195 2.4E-25 T 29-03-2018 Y880_RS26425 b4438bc7555fc8c08b70be5882f3342e 207 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 16 197 8.5E-31 T 29-03-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y880_RS26425 b4438bc7555fc8c08b70be5882f3342e 207 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 15 197 2.1E-39 T 29-03-2018 Y880_RS26425 b4438bc7555fc8c08b70be5882f3342e 207 Gene3D G3DSA:3.40.50.1000 13 200 2.5E-7 T 29-03-2018 IPR023214 HAD-like domain Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 Pfam PF06628 Catalase-related immune-responsive 436 495 3.3E-11 T 29-03-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 SMART SM01060 34 414 2.6E-240 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 PIRSF PIRSF038928 24 503 4.4E-174 T 29-03-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 ProSitePatterns PS00438 Catalase proximal active site signature. 70 86 - T 29-03-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 Pfam PF00199 Catalase 34 411 4.4E-164 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 357 365 - T 29-03-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 SUPERFAMILY SSF56634 29 503 1.57E-186 T 29-03-2018 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 Gene3D G3DSA:2.40.180.10 21 381 2.6E-147 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 47 70 1.5E-66 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 109 127 1.5E-66 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 344 370 1.5E-66 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 130 147 1.5E-66 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 149 167 1.5E-66 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS21410 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 312 339 1.5E-66 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS25995 cb93e6fb2e093ca1a9ae2d55ebe32b5f 652 Pfam PF13387 Domain of unknown function (DUF4105) 271 441 7.2E-31 T 29-03-2018 IPR025178 Domain of unknown function DUF4105 Y880_RS25995 cb93e6fb2e093ca1a9ae2d55ebe32b5f 652 Gene3D G3DSA:3.40.390.10 35 245 2.5E-7 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 Y880_RS13020 ae4a6f095aa5cd74db630046e2ebf75d 245 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 4 243 2.3E-97 T 29-03-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112 Y880_RS13020 ae4a6f095aa5cd74db630046e2ebf75d 245 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 50 90 - T 29-03-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 Y880_RS13020 ae4a6f095aa5cd74db630046e2ebf75d 245 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 2 245 34.098 T 29-03-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112 Y880_RS13020 ae4a6f095aa5cd74db630046e2ebf75d 245 Gene3D G3DSA:3.40.50.1580 2 245 1.9E-43 T 29-03-2018 Y880_RS13020 ae4a6f095aa5cd74db630046e2ebf75d 245 SUPERFAMILY SSF53167 4 243 4.03E-78 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Y880_RS13020 ae4a6f095aa5cd74db630046e2ebf75d 245 Pfam PF01048 Phosphorylase superfamily 4 243 1.4E-42 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.0E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.0E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.0E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.0E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.0E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.0E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 Gene3D G3DSA:3.40.50.720 43 253 1.9E-67 T 29-03-2018 Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 Gene3D G3DSA:3.40.50.720 1 42 1.1E-8 T 29-03-2018 Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 SUPERFAMILY SSF51735 2 252 1.5E-83 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS05300 c6cce16c1f6a8729cb4306ac6e11e1a1 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 4.8E-73 T 29-03-2018 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 Pfam PF00196 Bacterial regulatory proteins, luxR family 845 895 5.3E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 844 858 4.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 874 886 4.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 858 874 4.1E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 SUPERFAMILY SSF52540 30 260 1.03E-10 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 ProSitePatterns PS00622 LuxR-type HTH domain signature. 858 885 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 Gene3D G3DSA:3.40.50.300 32 306 3.7E-7 T 29-03-2018 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 SUPERFAMILY SSF46894 840 904 1.26E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 SMART SM00421 841 898 2.7E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 Gene3D G3DSA:1.25.40.10 464 832 5.7E-19 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 Pfam PF13191 AAA ATPase domain 38 169 4.1E-10 T 29-03-2018 Y880_RS05880 c71003476007ca9bb3167de227114ea4 907 Gene3D G3DSA:1.10.10.10 836 907 5.5E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10440 5854b8ce97b2a22f82c53fd9ffc321f8 131 Pfam PF02635 DsrE/DsrF-like family 1 127 4.0E-24 T 29-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein Y880_RS10440 5854b8ce97b2a22f82c53fd9ffc321f8 131 SUPERFAMILY SSF75169 1 127 1.86E-34 T 29-03-2018 IPR027396 DsrEFH-like Y880_RS10440 5854b8ce97b2a22f82c53fd9ffc321f8 131 Gene3D G3DSA:3.40.1260.10 1 129 1.2E-26 T 29-03-2018 Y880_RS10440 5854b8ce97b2a22f82c53fd9ffc321f8 131 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 127 4.3E-44 T 29-03-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 Y880_RS05470 840f5fa5c384e1f8ce5f1827acfeda8b 383 SUPERFAMILY SSF103473 7 379 1.57E-50 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS05470 840f5fa5c384e1f8ce5f1827acfeda8b 383 Pfam PF12832 MFS_1 like family 7 361 3.2E-85 T 29-03-2018 IPR024989 Major facilitator superfamily associated domain Y880_RS05470 840f5fa5c384e1f8ce5f1827acfeda8b 383 Gene3D G3DSA:1.20.1250.20 194 383 9.0E-22 T 29-03-2018 Y880_RS05470 840f5fa5c384e1f8ce5f1827acfeda8b 383 Gene3D G3DSA:1.20.1250.20 4 193 4.9E-20 T 29-03-2018 Y880_RS05470 840f5fa5c384e1f8ce5f1827acfeda8b 383 PIRSF PIRSF004925 2 382 1.2E-107 T 29-03-2018 IPR026032 Probable 3-phenylpropionic acid transporter Y880_RS01220 06c06f9a1d7efe3d662505c32f739074 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 223 1.1E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS01220 06c06f9a1d7efe3d662505c32f739074 232 Gene3D G3DSA:1.10.3720.10 2 226 1.7E-36 T 29-03-2018 Y880_RS01220 06c06f9a1d7efe3d662505c32f739074 232 SUPERFAMILY SSF161098 13 215 2.09E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS01220 06c06f9a1d7efe3d662505c32f739074 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 117 5.3E-22 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS24775 16e9def14489a716b7a026680e85dd03 325 SUPERFAMILY SSF50129 1 140 3.5E-41 T 29-03-2018 IPR011032 GroES-like Y880_RS24775 16e9def14489a716b7a026680e85dd03 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 7.8E-11 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS24775 16e9def14489a716b7a026680e85dd03 325 Pfam PF00107 Zinc-binding dehydrogenase 151 272 4.9E-32 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS24775 16e9def14489a716b7a026680e85dd03 325 Gene3D G3DSA:3.90.180.10 1 134 9.4E-45 T 29-03-2018 Y880_RS24775 16e9def14489a716b7a026680e85dd03 325 SUPERFAMILY SSF51735 111 274 3.18E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24775 16e9def14489a716b7a026680e85dd03 325 SMART SM00829 10 322 2.7E-57 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS24775 16e9def14489a716b7a026680e85dd03 325 Gene3D G3DSA:3.40.50.720 135 308 7.8E-43 T 29-03-2018 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 29-03-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 4.6E-23 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 72 5.0E-16 T 29-03-2018 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 SUPERFAMILY SSF54747 3 72 7.46E-30 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.661 T 29-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 3.3E-29 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 Gene3D G3DSA:1.10.10.250 73 141 1.2E-22 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 SMART SM00649 9 141 5.8E-83 T 29-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 SUPERFAMILY SSF46906 68 141 9.68E-24 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 Gene3D G3DSA:3.30.1550.10 3 72 8.1E-35 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal Y880_RS19625 289c47e462a79e6ce33182b3cb634261 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.6E-64 T 29-03-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:3.20.20.60 429 746 1.1E-91 T 29-03-2018 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 179 736 1.1E-141 T 29-03-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:3.30.450.40 1 164 8.6E-32 T 29-03-2018 IPR029016 GAF domain-like Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF00391 PEP-utilising enzyme, mobile domain 327 399 2.8E-16 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 426 713 1.9E-98 T 29-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF52009 300 420 6.93E-29 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF55781 2 158 2.4E-32 T 29-03-2018 IPR029016 GAF domain-like Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF51621 427 715 1.05E-102 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 620 638 - T 29-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF05524 PEP-utilising enzyme, N-terminal 180 301 2.7E-27 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:3.50.30.10 312 428 7.5E-20 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 620 635 5.9E-24 T 29-03-2018 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 673 685 5.9E-24 T 29-03-2018 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 467 486 5.9E-24 T 29-03-2018 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 637 652 5.9E-24 T 29-03-2018 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF47831 204 316 7.45E-30 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:1.10.274.10 204 311 3.3E-31 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 SMART SM00065 17 164 4.5E-23 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS28335 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF01590 GAF domain 17 152 3.3E-15 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS17140 08fb7efa57598dacfe86be9acb9a73e1 282 Pfam PF01551 Peptidase family M23 179 273 9.1E-29 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS17140 08fb7efa57598dacfe86be9acb9a73e1 282 SUPERFAMILY SSF51261 85 277 2.62E-49 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS17140 08fb7efa57598dacfe86be9acb9a73e1 282 Gene3D G3DSA:2.60.40.1590 31 123 8.4E-35 T 29-03-2018 Y880_RS17140 08fb7efa57598dacfe86be9acb9a73e1 282 Gene3D G3DSA:2.70.70.10 124 282 5.3E-43 T 29-03-2018 Y880_RS17720 488be745226bdbcd1a046370245825d2 169 Pfam PF04542 Sigma-70 region 2 15 80 2.2E-15 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS17720 488be745226bdbcd1a046370245825d2 169 Gene3D G3DSA:1.10.1740.10 2 73 1.2E-17 T 29-03-2018 Y880_RS17720 488be745226bdbcd1a046370245825d2 169 SUPERFAMILY SSF88659 105 164 1.26E-12 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS17720 488be745226bdbcd1a046370245825d2 169 SUPERFAMILY SSF88946 10 100 7.06E-15 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS17720 488be745226bdbcd1a046370245825d2 169 Gene3D G3DSA:1.10.10.10 74 166 1.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17720 488be745226bdbcd1a046370245825d2 169 Pfam PF08281 Sigma-70, region 4 111 163 3.9E-14 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS17720 488be745226bdbcd1a046370245825d2 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 162 5.1E-19 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS08745 66d165ce37ffa3b31d4158dd4f311d98 284 SUPERFAMILY SSF46689 188 236 6.72E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08745 66d165ce37ffa3b31d4158dd4f311d98 284 Gene3D G3DSA:1.10.10.60 181 238 8.1E-11 T 29-03-2018 Y880_RS08745 66d165ce37ffa3b31d4158dd4f311d98 284 Pfam PF12833 Helix-turn-helix domain 208 282 1.1E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS08745 66d165ce37ffa3b31d4158dd4f311d98 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 239 281 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS08745 66d165ce37ffa3b31d4158dd4f311d98 284 SMART SM00342 202 283 6.6E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS08745 66d165ce37ffa3b31d4158dd4f311d98 284 SUPERFAMILY SSF46689 238 283 1.79E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08745 66d165ce37ffa3b31d4158dd4f311d98 284 Gene3D G3DSA:1.10.10.60 239 283 2.2E-9 T 29-03-2018 Y880_RS03840 773a3c44af6769d344a3027301143296 321 Gene3D G3DSA:1.10.10.60 255 307 7.5E-11 T 29-03-2018 Y880_RS03840 773a3c44af6769d344a3027301143296 321 Gene3D G3DSA:1.10.10.60 126 254 2.7E-13 T 29-03-2018 Y880_RS03840 773a3c44af6769d344a3027301143296 321 SMART SM00342 216 299 2.7E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS03840 773a3c44af6769d344a3027301143296 321 SUPERFAMILY SSF46689 201 249 2.69E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03840 773a3c44af6769d344a3027301143296 321 Pfam PF12833 Helix-turn-helix domain 222 297 5.8E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS03840 773a3c44af6769d344a3027301143296 321 Pfam PF06719 AraC-type transcriptional regulator N-terminus 38 187 3.5E-39 T 29-03-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal Y880_RS03840 773a3c44af6769d344a3027301143296 321 SUPERFAMILY SSF46689 253 303 9.86E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS18190 baf73e7157e84b82880d29f8b1010246 207 Gene3D G3DSA:3.30.160.150 20 170 8.4E-34 T 29-03-2018 Y880_RS18190 baf73e7157e84b82880d29f8b1010246 207 Pfam PF04390 Lipopolysaccharide-assembly 35 155 8.6E-10 T 29-03-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Y880_RS18190 baf73e7157e84b82880d29f8b1010246 207 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 161 23.432 T 29-03-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Y880_RS29650 685ebc3fd602a78c3aaeadb4d83ee3fa 640 PIRSF PIRSF000549 1 640 1.2E-288 T 29-03-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 Y880_RS29650 685ebc3fd602a78c3aaeadb4d83ee3fa 640 SMART SM00763 19 376 6.7E-221 T 29-03-2018 IPR013153 PrkA AAA domain Y880_RS29650 685ebc3fd602a78c3aaeadb4d83ee3fa 640 Pfam PF08298 PrkA AAA domain 20 376 1.4E-180 T 29-03-2018 IPR013153 PrkA AAA domain Y880_RS29650 685ebc3fd602a78c3aaeadb4d83ee3fa 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 1.1E-74 T 29-03-2018 IPR010650 PrkA C-terminal domain Y880_RS29650 685ebc3fd602a78c3aaeadb4d83ee3fa 640 Gene3D G3DSA:3.40.50.300 58 363 2.0E-10 T 29-03-2018 Y880_RS29650 685ebc3fd602a78c3aaeadb4d83ee3fa 640 SUPERFAMILY SSF52540 75 343 1.05E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28825 7f27ffd72a331e3cf1490a5639d12334 184 SUPERFAMILY SSF109604 4 164 3.01E-31 T 29-03-2018 Y880_RS28825 7f27ffd72a331e3cf1490a5639d12334 184 Pfam PF13328 HD domain 17 164 1.8E-10 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS15360 694b6073c4f76150ad1f97d7880938e0 333 SUPERFAMILY SSF53850 34 260 4.19E-52 T 29-03-2018 Y880_RS15360 694b6073c4f76150ad1f97d7880938e0 333 SMART SM00062 31 247 0.0014 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS15360 694b6073c4f76150ad1f97d7880938e0 333 Pfam PF09084 NMT1/THI5 like 62 250 1.1E-25 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS15360 694b6073c4f76150ad1f97d7880938e0 333 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 32 313 3.2E-75 T 29-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y880_RS15360 694b6073c4f76150ad1f97d7880938e0 333 Gene3D G3DSA:3.40.190.10 136 319 5.4E-33 T 29-03-2018 Y880_RS15360 694b6073c4f76150ad1f97d7880938e0 333 Gene3D G3DSA:3.40.190.10 26 135 3.8E-9 T 29-03-2018 Y880_RS05195 873c2a3d8963f08df1f8c6b40dda81ba 288 Gene3D G3DSA:3.30.450.40 112 288 2.5E-35 T 29-03-2018 IPR029016 GAF domain-like Y880_RS05195 873c2a3d8963f08df1f8c6b40dda81ba 288 SUPERFAMILY SSF46785 44 118 6.83E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05195 873c2a3d8963f08df1f8c6b40dda81ba 288 SMART SM00346 44 134 2.6E-21 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS05195 873c2a3d8963f08df1f8c6b40dda81ba 288 SUPERFAMILY SSF55781 111 286 7.19E-37 T 29-03-2018 IPR029016 GAF domain-like Y880_RS05195 873c2a3d8963f08df1f8c6b40dda81ba 288 Pfam PF09339 IclR helix-turn-helix domain 46 95 3.0E-16 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS05195 873c2a3d8963f08df1f8c6b40dda81ba 288 Pfam PF01614 Bacterial transcriptional regulator 162 278 1.4E-10 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS05195 873c2a3d8963f08df1f8c6b40dda81ba 288 Gene3D G3DSA:1.10.10.10 26 105 1.8E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28040 2eaa629f78fe54de01bfde32abb4fddd 332 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 20 328 3.5E-141 T 29-03-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 Y880_RS28040 2eaa629f78fe54de01bfde32abb4fddd 332 Gene3D G3DSA:3.40.190.10 22 131 5.4E-23 T 29-03-2018 Y880_RS28040 2eaa629f78fe54de01bfde32abb4fddd 332 Gene3D G3DSA:3.40.190.10 132 331 8.7E-46 T 29-03-2018 Y880_RS28040 2eaa629f78fe54de01bfde32abb4fddd 332 SUPERFAMILY SSF53850 22 330 1.26E-88 T 29-03-2018 Y880_RS28040 2eaa629f78fe54de01bfde32abb4fddd 332 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 148 156 - T 29-03-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 Y880_RS28040 2eaa629f78fe54de01bfde32abb4fddd 332 Pfam PF13531 Bacterial extracellular solute-binding protein 35 282 1.4E-44 T 29-03-2018 Y880_RS10380 995ac44206a1b29a90e51641156d93b0 319 Pfam PF09084 NMT1/THI5 like 57 252 1.0E-15 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS10380 995ac44206a1b29a90e51641156d93b0 319 SMART SM00062 30 248 3.8E-23 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS10380 995ac44206a1b29a90e51641156d93b0 319 SUPERFAMILY SSF53850 29 258 1.07E-46 T 29-03-2018 Y880_RS10380 995ac44206a1b29a90e51641156d93b0 319 Gene3D G3DSA:3.40.190.10 25 136 1.3E-10 T 29-03-2018 Y880_RS10380 995ac44206a1b29a90e51641156d93b0 319 Gene3D G3DSA:3.40.190.10 137 314 1.1E-38 T 29-03-2018 Y880_RS10380 995ac44206a1b29a90e51641156d93b0 319 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 31 310 8.1E-63 T 29-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y880_RS25970 1ec71e2eb35485184a554051ab1e78ec 278 Pfam PF08241 Methyltransferase domain 64 158 1.5E-17 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS25970 1ec71e2eb35485184a554051ab1e78ec 278 Gene3D G3DSA:3.40.50.150 28 229 6.1E-32 T 29-03-2018 Y880_RS25970 1ec71e2eb35485184a554051ab1e78ec 278 SUPERFAMILY SSF53335 49 229 4.56E-34 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS10435 7217a17509ca7dd46210612a8c323a8c 222 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 88 119 - T 29-03-2018 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 Y880_RS10435 7217a17509ca7dd46210612a8c323a8c 222 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 21 215 3.0E-44 T 29-03-2018 IPR006214 Bax inhibitor 1-related Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.0E-25 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 Pfam PF03466 LysR substrate binding domain 88 257 2.5E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 SUPERFAMILY SSF53850 87 256 1.49E-35 T 29-03-2018 Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 Gene3D G3DSA:1.10.10.10 1 83 8.9E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.0E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.0E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.0E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 Gene3D G3DSA:3.40.190.10 178 258 2.9E-18 T 29-03-2018 Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 Gene3D G3DSA:3.40.190.10 89 177 1.1E-19 T 29-03-2018 Y880_RS07440 409ea5327472c61de633f6ac9f6f26f5 259 SUPERFAMILY SSF46785 3 109 3.69E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 Pfam PF00437 Type II/IV secretion system protein 11 269 1.7E-45 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 Gene3D G3DSA:3.30.450.90 1 100 5.3E-26 T 29-03-2018 Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 SMART SM00382 122 256 0.0063 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 6.8E-153 T 29-03-2018 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 Gene3D G3DSA:3.40.50.300 116 271 2.1E-26 T 29-03-2018 Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 Gene3D G3DSA:3.40.50.300 272 344 4.7E-13 T 29-03-2018 Y880_RS28635 a93945545a393f8ff423720c7e3c3baf 344 SUPERFAMILY SSF52540 5 335 1.69E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 Pfam PF03471 Transporter associated domain 202 277 1.1E-20 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 Pfam PF00571 CBS domain 63 120 0.0059 T 29-03-2018 IPR000644 CBS domain Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 Pfam PF00571 CBS domain 136 184 4.1E-5 T 29-03-2018 IPR000644 CBS domain Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 SUPERFAMILY SSF56176 198 278 3.82E-22 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 SMART SM01091 200 278 6.8E-30 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 SUPERFAMILY SSF54631 60 198 1.64E-31 T 29-03-2018 Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 SMART SM00116 72 121 13.0 T 29-03-2018 IPR000644 CBS domain Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 SMART SM00116 136 184 0.64 T 29-03-2018 IPR000644 CBS domain Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 Gene3D G3DSA:3.10.580.10 42 190 1.1E-30 T 29-03-2018 Y880_RS18165 58f0a5558dacd35b0f635011e648773b 279 Gene3D G3DSA:3.30.465.10 191 278 1.9E-25 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS02185 d0f3800acf9ae0899bb77e664943f530 120 Pfam PF16703 Domain of unknown function (DUF5064) 1 116 2.2E-52 T 29-03-2018 IPR032024 Protein of unknown function DUF5064 Y880_RS23310 047f4679c3ee5444872ee47aa33e3d5d 289 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 12 287 50.31 T 29-03-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 Y880_RS23310 047f4679c3ee5444872ee47aa33e3d5d 289 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 51 285 7.2E-80 T 29-03-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Y880_RS23310 047f4679c3ee5444872ee47aa33e3d5d 289 Pfam PF02666 Phosphatidylserine decarboxylase 65 283 3.5E-60 T 29-03-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Y880_RS03930 0379d3f2369ae575869d253a223b7b9c 282 Pfam PF13503 Domain of unknown function (DUF4123) 18 138 3.1E-21 T 29-03-2018 IPR025391 Domain of unknown function DUF4123 Y880_RS14300 066a6eb8f32d162abc3c16c42e7774c3 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 200 5.5E-48 T 29-03-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y880_RS14300 066a6eb8f32d162abc3c16c42e7774c3 216 SUPERFAMILY SSF56784 2 206 1.68E-28 T 29-03-2018 IPR023214 HAD-like domain Y880_RS14300 066a6eb8f32d162abc3c16c42e7774c3 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 6.8E-31 T 29-03-2018 Y880_RS14300 066a6eb8f32d162abc3c16c42e7774c3 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 189 1.5E-28 T 29-03-2018 Y880_RS14300 066a6eb8f32d162abc3c16c42e7774c3 216 Gene3D G3DSA:1.20.1440.100 16 77 4.1E-22 T 29-03-2018 Y880_RS14300 066a6eb8f32d162abc3c16c42e7774c3 216 Gene3D G3DSA:3.40.50.1000 78 208 7.7E-10 T 29-03-2018 IPR023214 HAD-like domain Y880_RS06335 ba2ba72a8b71ea5c49074b68a3d17a66 346 Gene3D G3DSA:3.20.20.70 85 340 3.2E-24 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS06335 ba2ba72a8b71ea5c49074b68a3d17a66 346 Pfam PF04055 Radical SAM superfamily 102 261 9.6E-11 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS06335 ba2ba72a8b71ea5c49074b68a3d17a66 346 SUPERFAMILY SSF102114 100 303 7.85E-12 T 29-03-2018 Y880_RS06335 ba2ba72a8b71ea5c49074b68a3d17a66 346 PIRSF PIRSF006004 1 346 2.4E-97 T 29-03-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 4.2E-30 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 SUPERFAMILY SSF56645 6 243 1.24E-78 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 378 2.0E-49 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 PIRSF PIRSF016578 109 363 1.3E-13 T 29-03-2018 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 PIRSF PIRSF016578 3 83 1.5E-7 T 29-03-2018 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 Gene3D G3DSA:1.20.140.10 217 384 8.5E-63 T 29-03-2018 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 SUPERFAMILY SSF47203 229 380 2.9E-56 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 117 5.2E-30 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 Gene3D G3DSA:2.40.110.10 120 216 8.0E-40 T 29-03-2018 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS05200 371f5bfd44e644cc549d95a0452f9d0c 384 Gene3D G3DSA:1.10.540.10 4 119 6.3E-31 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS13155 0452ed6af940d325eddaa765779f384e 198 SUPERFAMILY SSF53448 8 189 7.77E-30 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS13155 0452ed6af940d325eddaa765779f384e 198 Gene3D G3DSA:3.90.550.10 5 197 7.8E-27 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS13155 0452ed6af940d325eddaa765779f384e 198 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 9 191 9.8E-59 T 29-03-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Y880_RS13155 0452ed6af940d325eddaa765779f384e 198 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 7 194 25.757 T 29-03-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Y880_RS13155 0452ed6af940d325eddaa765779f384e 198 Pfam PF12804 MobA-like NTP transferase domain 12 165 3.0E-31 T 29-03-2018 IPR025877 MobA-like NTP transferase Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 SUPERFAMILY SSF160246 3 144 3.14E-33 T 29-03-2018 Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 10 566 9.3E-255 T 29-03-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 43 146 3.6E-12 T 29-03-2018 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 SUPERFAMILY SSF52540 176 564 1.27E-100 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 385 399 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 Pfam PF00437 Type II/IV secretion system protein 190 457 3.7E-93 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 Gene3D G3DSA:3.30.450.90 158 290 1.9E-46 T 29-03-2018 Y880_RS20945 459992b40558bf9f981e9ddfe16c5c2b 566 Gene3D G3DSA:3.40.50.300 291 566 2.7E-63 T 29-03-2018 Y880_RS13860 d04c03b0a8310d6ff01a7fa9f7cc97cf 444 Pfam PF01979 Amidohydrolase family 64 412 3.2E-68 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS13860 d04c03b0a8310d6ff01a7fa9f7cc97cf 444 SUPERFAMILY SSF51556 66 365 3.36E-94 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS13860 d04c03b0a8310d6ff01a7fa9f7cc97cf 444 SUPERFAMILY SSF51338 9 66 3.38E-25 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS13860 d04c03b0a8310d6ff01a7fa9f7cc97cf 444 SUPERFAMILY SSF51338 364 438 3.38E-25 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS13860 d04c03b0a8310d6ff01a7fa9f7cc97cf 444 Gene3D G3DSA:3.20.20.140 79 364 8.2E-59 T 29-03-2018 Y880_RS13860 d04c03b0a8310d6ff01a7fa9f7cc97cf 444 Gene3D G3DSA:2.30.40.10 3 78 1.2E-10 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 PIRSF PIRSF000103 1 291 2.1E-75 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 283 4.7E-36 T 29-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 Gene3D G3DSA:3.40.50.720 1 164 2.1E-34 T 29-03-2018 Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 5.1E-50 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 SUPERFAMILY SSF48179 164 291 1.81E-37 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 3 291 6.7E-118 T 29-03-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 SUPERFAMILY SSF51735 2 162 1.53E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04475 f28da4e80800fae327783af5caf35ebe 296 Gene3D G3DSA:1.10.1040.10 165 294 9.8E-29 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS24285 d66e513ca71ba095229e062d58d75739 212 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 207 8.5E-66 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y880_RS24285 d66e513ca71ba095229e062d58d75739 212 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 208 34.418 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y880_RS24285 d66e513ca71ba095229e062d58d75739 212 SUPERFAMILY SSF52317 2 208 7.55E-55 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS24285 d66e513ca71ba095229e062d58d75739 212 Gene3D G3DSA:3.40.50.880 1 211 7.6E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS24285 d66e513ca71ba095229e062d58d75739 212 PIRSF PIRSF000495 2 210 2.1E-66 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y880_RS24285 d66e513ca71ba095229e062d58d75739 212 Pfam PF00117 Glutamine amidotransferase class-I 6 206 2.1E-18 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS24010 275243656e146146d68a8d668a9b067b 790 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 511 7.9E-117 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS24010 275243656e146146d68a8d668a9b067b 790 SUPERFAMILY SSF69255 371 459 8.63E-33 T 29-03-2018 Y880_RS24010 275243656e146146d68a8d668a9b067b 790 Pfam PF05954 Phage late control gene D protein (GPD) 29 327 2.7E-78 T 29-03-2018 Y880_RS24010 275243656e146146d68a8d668a9b067b 790 Gene3D G3DSA:2.40.50.230 377 459 3.3E-37 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS24010 275243656e146146d68a8d668a9b067b 790 SUPERFAMILY SSF69279 192 371 3.23E-42 T 29-03-2018 Y880_RS24010 275243656e146146d68a8d668a9b067b 790 Gene3D G3DSA:3.55.50.10 95 189 1.8E-27 T 29-03-2018 Y880_RS24010 275243656e146146d68a8d668a9b067b 790 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 10 529 9.3E-200 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS24010 275243656e146146d68a8d668a9b067b 790 SUPERFAMILY SSF69349 449 632 2.2E-40 T 29-03-2018 Y880_RS24010 275243656e146146d68a8d668a9b067b 790 SUPERFAMILY SSF69279 10 185 2.89E-54 T 29-03-2018 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Gene3D G3DSA:1.10.540.10 33 155 2.4E-17 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 SUPERFAMILY SSF56645 39 276 1.13E-55 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 279 451 2.7E-23 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 160 268 6.8E-18 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 45 155 1.6E-12 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Gene3D G3DSA:2.40.110.10 156 271 6.6E-24 T 29-03-2018 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 476 590 1.0E-29 T 29-03-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 26 4.4E-10 T 29-03-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 SUPERFAMILY SSF47203 284 456 1.61E-46 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS24530 3f93aa0a90524da8cfe35fed15cd1112 596 Gene3D G3DSA:1.20.140.10 272 459 1.7E-43 T 29-03-2018 Y880_RS11100 c4f3cf24aa9a15822cbfc82bb8ca59f4 70 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 1 51 1.4E-23 T 29-03-2018 IPR010260 DNA-binding transcriptional activator AlpA Y880_RS11100 c4f3cf24aa9a15822cbfc82bb8ca59f4 70 Gene3D G3DSA:1.10.10.10 4 62 5.5E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02905 0de0460f16c07376e88de9af2c2f51e4 185 SUPERFAMILY SSF52218 6 176 1.04E-52 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS02905 0de0460f16c07376e88de9af2c2f51e4 185 Pfam PF03358 NADPH-dependent FMN reductase 6 150 2.8E-39 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y880_RS02905 0de0460f16c07376e88de9af2c2f51e4 185 Gene3D G3DSA:3.40.50.360 1 185 8.5E-47 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 251 9.9E-8 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 267 9.9E-8 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 Pfam PF12833 Helix-turn-helix domain 191 268 3.6E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 SUPERFAMILY SSF46689 167 217 3.76E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 Gene3D G3DSA:1.10.10.60 225 278 1.3E-15 T 29-03-2018 Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 Gene3D G3DSA:2.60.120.10 9 224 4.3E-12 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 SMART SM00342 184 267 4.1E-30 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 263 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS05635 afb405577b63b4ca83abfec3e80382be 278 SUPERFAMILY SSF46689 220 269 4.21E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS12035 cfd9ef016a021e669bb4169b5526cf1b 182 SUPERFAMILY SSF53850 7 124 2.35E-12 T 29-03-2018 Y880_RS12035 cfd9ef016a021e669bb4169b5526cf1b 182 Gene3D G3DSA:3.40.190.10 6 94 1.1E-11 T 29-03-2018 Y880_RS12035 cfd9ef016a021e669bb4169b5526cf1b 182 Gene3D G3DSA:3.40.190.10 95 168 4.2E-5 T 29-03-2018 Y880_RS12035 cfd9ef016a021e669bb4169b5526cf1b 182 Pfam PF03466 LysR substrate binding domain 7 117 4.7E-13 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS26600 c1eba41421f103df7196fbfc032d7940 366 ProSitePatterns PS00617 RecF protein signature 1. 118 138 - T 29-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Y880_RS26600 c1eba41421f103df7196fbfc032d7940 366 ProSitePatterns PS00618 RecF protein signature 2. 300 318 - T 29-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Y880_RS26600 c1eba41421f103df7196fbfc032d7940 366 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 357 7.4E-33 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal Y880_RS26600 c1eba41421f103df7196fbfc032d7940 366 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 359 3.5E-115 T 29-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Y880_RS26600 c1eba41421f103df7196fbfc032d7940 366 Gene3D G3DSA:3.40.50.300 1 361 3.2E-27 T 29-03-2018 Y880_RS26600 c1eba41421f103df7196fbfc032d7940 366 SUPERFAMILY SSF52540 1 342 6.94E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26600 c1eba41421f103df7196fbfc032d7940 366 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 366 94.788 T 29-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Y880_RS10570 3bdad92dc65e294eb2ae020afe5975df 141 Gene3D G3DSA:3.40.630.30 1 141 6.9E-32 T 29-03-2018 Y880_RS10570 3bdad92dc65e294eb2ae020afe5975df 141 Pfam PF13673 Acetyltransferase (GNAT) domain 24 138 3.3E-23 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS10570 3bdad92dc65e294eb2ae020afe5975df 141 SUPERFAMILY SSF55729 3 140 3.43E-36 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS03765 56da316267f6b0ca261c3a7ab8601d97 63 SUPERFAMILY SSF53901 8 49 6.14E-6 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS03765 56da316267f6b0ca261c3a7ab8601d97 63 Gene3D G3DSA:3.40.47.10 1 62 2.3E-7 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 Gene3D G3DSA:3.10.180.10 293 435 1.1E-15 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 Pfam PF01261 Xylose isomerase-like TIM barrel 18 217 2.7E-37 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 Gene3D G3DSA:3.10.180.10 436 633 5.5E-40 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 Gene3D G3DSA:3.20.20.150 1 266 1.8E-52 T 29-03-2018 Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 SUPERFAMILY SSF54593 292 621 3.38E-65 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 294 426 2.1E-37 T 29-03-2018 Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 441 565 6.6E-9 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS27810 38639d0c3b61b62b557e3b2caa83122b 634 SUPERFAMILY SSF51658 1 269 5.94E-76 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 Gene3D G3DSA:3.40.190.10 184 263 3.8E-17 T 29-03-2018 Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 Pfam PF03466 LysR substrate binding domain 89 264 9.5E-39 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.2E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.2E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.2E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 7.1E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 SUPERFAMILY SSF46785 1 112 6.01E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 Gene3D G3DSA:3.40.190.10 92 183 4.1E-22 T 29-03-2018 Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 SUPERFAMILY SSF53850 90 321 7.7E-42 T 29-03-2018 Y880_RS05850 3538cf533c1251bdad3bcc2232f03a2b 324 Gene3D G3DSA:1.10.10.10 1 91 1.3E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04430 8e9bfe47c4cf116f9a9f2ad2707de182 411 Pfam PF04346 Ethanolamine utilisation protein, EutH 5 384 2.7E-116 T 29-03-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 Y880_RS04430 8e9bfe47c4cf116f9a9f2ad2707de182 411 PIRSF PIRSF019466 2 407 1.1E-135 T 29-03-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 Y880_RS02325 366dd8c4bf3c51c2b94fb42127b4dad7 478 Pfam PF07196 Flagellin hook IN motif 127 186 7.8E-13 T 29-03-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Y880_RS02325 366dd8c4bf3c51c2b94fb42127b4dad7 478 Gene3D G3DSA:1.20.5.50 368 477 2.8E-6 T 29-03-2018 Y880_RS02325 366dd8c4bf3c51c2b94fb42127b4dad7 478 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 12 107 1.6E-20 T 29-03-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 Y880_RS02325 366dd8c4bf3c51c2b94fb42127b4dad7 478 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 234 459 5.8E-62 T 29-03-2018 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 Y880_RS26000 2d9d95e17cb80f545c79c6eb0255d129 139 Gene3D G3DSA:3.90.1590.10 1 136 2.0E-42 T 29-03-2018 Y880_RS26000 2d9d95e17cb80f545c79c6eb0255d129 139 SUPERFAMILY SSF51316 1 130 8.06E-42 T 29-03-2018 IPR011057 Mss4-like Y880_RS26000 2d9d95e17cb80f545c79c6eb0255d129 139 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 113 4.9E-19 T 29-03-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 SUPERFAMILY SSF51735 1 182 1.5E-62 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 Gene3D G3DSA:3.40.50.720 1 163 1.2E-73 T 29-03-2018 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 2.4E-127 T 29-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 29-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 Gene3D G3DSA:3.30.360.10 164 314 4.9E-62 T 29-03-2018 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 3.3E-35 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 3.3E-35 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 3.3E-35 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 3.3E-35 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 3.3E-35 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 PIRSF PIRSF000149 1 334 2.5E-135 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 SMART SM00846 3 154 3.3E-94 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 312 2.0E-61 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 105 6.0E-38 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS13995 85b487092eab6472ee6491311a6710b8 334 SUPERFAMILY SSF55347 154 313 4.76E-67 T 29-03-2018 Y880_RS05710 356f3a3dadef5372d1f3352c1605cc17 113 Gene3D G3DSA:3.30.70.970 2 107 7.7E-21 T 29-03-2018 IPR009671 Regulator of ribonuclease activity B domain Y880_RS05710 356f3a3dadef5372d1f3352c1605cc17 113 Pfam PF06877 Regulator of ribonuclease activity B 9 104 7.5E-21 T 29-03-2018 IPR009671 Regulator of ribonuclease activity B domain Y880_RS05710 356f3a3dadef5372d1f3352c1605cc17 113 SUPERFAMILY SSF89946 5 107 3.4E-23 T 29-03-2018 IPR009671 Regulator of ribonuclease activity B domain Y880_RS17500 6f54245e0b0ba3796bb7c6e2b7a4cc4e 238 Pfam PF01066 CDP-alcohol phosphatidyltransferase 20 68 5.3E-6 T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y880_RS17500 6f54245e0b0ba3796bb7c6e2b7a4cc4e 238 PIRSF PIRSF000851 2 238 1.8E-89 T 29-03-2018 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 Y880_RS21325 f7d875a85e4293d98376a179aa21e6a5 172 Gene3D G3DSA:1.10.357.10 33 167 8.6E-9 T 29-03-2018 Y880_RS21325 f7d875a85e4293d98376a179aa21e6a5 172 SUPERFAMILY SSF46689 6 62 1.33E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS21325 f7d875a85e4293d98376a179aa21e6a5 172 SUPERFAMILY SSF48498 63 141 1.75E-8 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS21325 f7d875a85e4293d98376a179aa21e6a5 172 Gene3D G3DSA:1.10.10.60 4 32 1.3E-5 T 29-03-2018 Y880_RS20960 e8209e4370e6939f0eb7bbfc1ac7ccba 203 Pfam PF01121 Dephospho-CoA kinase 5 181 1.3E-68 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Y880_RS20960 e8209e4370e6939f0eb7bbfc1ac7ccba 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 6 189 2.8E-52 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Y880_RS20960 e8209e4370e6939f0eb7bbfc1ac7ccba 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 4 198 26.733 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Y880_RS20960 e8209e4370e6939f0eb7bbfc1ac7ccba 203 Gene3D G3DSA:3.40.50.300 1 201 1.7E-43 T 29-03-2018 Y880_RS20960 e8209e4370e6939f0eb7bbfc1ac7ccba 203 SUPERFAMILY SSF52540 4 196 1.12E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00570 708a55e91688d88f47d9564d932c513e 271 Pfam PF01925 Sulfite exporter TauE/SafE 6 268 1.3E-37 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 SMART SM00382 509 694 2.0E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 Gene3D G3DSA:3.40.50.300 469 720 5.4E-54 T 29-03-2018 Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 Gene3D G3DSA:3.90.70.10 24 141 2.9E-13 T 29-03-2018 Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 Pfam PF00005 ABC transporter 505 648 4.5E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 20 709 1.8E-271 T 29-03-2018 IPR017750 ATPase, type I secretion system Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 SUPERFAMILY SSF52540 476 709 1.26E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 Pfam PF00664 ABC transporter transmembrane region 173 432 2.4E-18 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 SUPERFAMILY SSF90123 157 467 3.14E-50 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 ProSitePatterns PS00211 ABC transporters family signature. 620 634 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS06530 8e4e7c0067a756485a1a5ee1291dcac3 723 Gene3D G3DSA:1.20.1560.10 156 468 1.4E-34 T 29-03-2018 Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 Gene3D G3DSA:1.10.10.60 204 250 3.6E-12 T 29-03-2018 Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 SUPERFAMILY SSF46689 201 249 1.52E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 SUPERFAMILY SSF51182 13 179 7.97E-7 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 Gene3D G3DSA:1.10.10.60 133 203 4.6E-13 T 29-03-2018 Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 Gene3D G3DSA:2.60.120.280 6 132 1.0E-7 T 29-03-2018 Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 Pfam PF12833 Helix-turn-helix domain 171 249 6.4E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 SUPERFAMILY SSF46689 151 199 1.12E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00515 ae152afab6898fbf9baddc8946df84f1 250 SMART SM00342 165 248 1.4E-30 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00060 29d613cf95f5c6de9e2fd67e32e6bf2b 143 Pfam PF11356 Type II secretion system protein C 60 125 6.1E-8 T 29-03-2018 IPR024961 Type II secretion system protein C, N-terminal Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Gene3D G3DSA:1.10.150.20 82 141 3.6E-14 T 29-03-2018 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 201 31.777 T 29-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Pfam PF14520 Helix-hairpin-helix domain 72 130 4.3E-18 T 29-03-2018 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 SUPERFAMILY SSF50249 2 63 5.71E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Gene3D G3DSA:2.40.50.140 2 55 6.0E-28 T 29-03-2018 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 SMART SM00278 73 92 0.72 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 SMART SM00278 108 127 0.017 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Pfam PF07499 RuvA, C-terminal domain 157 200 1.7E-15 T 29-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Gene3D G3DSA:1.10.8.10 155 200 4.9E-16 T 29-03-2018 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Gene3D G3DSA:1.10.340.30 56 81 0.017 T 29-03-2018 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 SUPERFAMILY SSF46929 156 200 1.2E-10 T 29-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 SUPERFAMILY SSF47781 66 137 2.54E-22 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 199 3.2E-61 T 29-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Y880_RS01640 4430d897f9d60e4532dc991a68933bff 201 Pfam PF01330 RuvA N terminal domain 2 62 1.7E-22 T 29-03-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 SUPERFAMILY SSF52540 193 429 1.25E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 407 416 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 SUPERFAMILY SSF46689 464 516 2.42E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 SUPERFAMILY SSF55781 24 172 1.22E-16 T 29-03-2018 IPR029016 GAF domain-like Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 218 231 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 Pfam PF00158 Sigma-54 interaction domain 194 360 4.6E-69 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:3.30.450.40 5 199 5.9E-22 T 29-03-2018 IPR029016 GAF domain-like Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:1.10.8.60 367 439 3.4E-18 T 29-03-2018 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 Pfam PF01590 GAF domain 25 159 2.5E-9 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:3.40.50.300 200 366 7.1E-32 T 29-03-2018 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 SMART SM00382 214 357 1.6E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 Pfam PF02954 Bacterial regulatory protein, Fis family 479 509 5.7E-5 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:1.10.10.60 441 517 8.2E-11 T 29-03-2018 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 280 295 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS10755 32639089fa20c77dd1357acb153c3ca3 517 SMART SM00065 22 170 1.5E-9 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS04920 f9d2546b6f54d74bef5cffda10d14726 113 PIRSF PIRSF021239 1 113 1.3E-54 T 29-03-2018 IPR007437 Putative member of DMT superfamily Y880_RS04920 f9d2546b6f54d74bef5cffda10d14726 113 Pfam PF04342 Putative member of DMT superfamily (DUF486) 7 111 4.8E-47 T 29-03-2018 IPR007437 Putative member of DMT superfamily Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 Gene3D G3DSA:3.40.190.10 208 334 1.0E-21 T 29-03-2018 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PIRSF PIRSF019574 1 365 2.1E-143 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 214 233 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 154 168 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 124 140 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 177 196 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 264 283 4.0E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 SUPERFAMILY SSF53850 27 364 3.83E-103 T 29-03-2018 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 Gene3D G3DSA:3.40.190.10 22 207 7.3E-35 T 29-03-2018 Y880_RS28130 5391c0ddf46cb86674335997bb110489 365 Pfam PF13416 Bacterial extracellular solute-binding protein 43 326 1.8E-35 T 29-03-2018 Y880_RS05295 61291367489b70baffc3c3184df9e0fe 334 Pfam PF16884 N-terminal domain of oxidoreductase 7 114 5.4E-38 T 29-03-2018 Y880_RS05295 61291367489b70baffc3c3184df9e0fe 334 Pfam PF00107 Zinc-binding dehydrogenase 159 292 7.7E-21 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS05295 61291367489b70baffc3c3184df9e0fe 334 SMART SM00829 20 332 2.8E-6 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS05295 61291367489b70baffc3c3184df9e0fe 334 SUPERFAMILY SSF50129 5 144 4.49E-37 T 29-03-2018 IPR011032 GroES-like Y880_RS05295 61291367489b70baffc3c3184df9e0fe 334 Gene3D G3DSA:3.40.50.720 150 276 5.2E-28 T 29-03-2018 Y880_RS05295 61291367489b70baffc3c3184df9e0fe 334 Gene3D G3DSA:3.90.180.10 1 149 1.9E-35 T 29-03-2018 Y880_RS05295 61291367489b70baffc3c3184df9e0fe 334 SUPERFAMILY SSF51735 125 299 2.03E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08830 ff862c18051adda60fa3be6b22538987 81 SUPERFAMILY SSF54862 9 74 1.47E-14 T 29-03-2018 Y880_RS08830 ff862c18051adda60fa3be6b22538987 81 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS08830 ff862c18051adda60fa3be6b22538987 81 Gene3D G3DSA:3.30.70.20 46 77 8.5E-5 T 29-03-2018 Y880_RS08830 ff862c18051adda60fa3be6b22538987 81 Pfam PF13187 4Fe-4S dicluster domain 28 71 1.9E-8 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS08830 ff862c18051adda60fa3be6b22538987 81 Gene3D G3DSA:3.30.70.20 1 45 3.4E-8 T 29-03-2018 Y880_RS27180 e61a8966da5d119ca4e1d14a65f0e998 304 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 14 296 7.2E-106 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y880_RS27180 e61a8966da5d119ca4e1d14a65f0e998 304 Pfam PF01040 UbiA prenyltransferase family 29 285 5.2E-60 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Y880_RS27180 e61a8966da5d119ca4e1d14a65f0e998 304 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 12 297 19.81 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y880_RS27180 e61a8966da5d119ca4e1d14a65f0e998 304 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 71 93 - T 29-03-2018 IPR030470 UbiA prenyltransferase conserved site Y880_RS15235 686132a2d4f642599bf3406e19226620 468 Pfam PF01266 FAD dependent oxidoreductase 31 393 7.4E-48 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS15235 686132a2d4f642599bf3406e19226620 468 SUPERFAMILY SSF51905 182 307 1.6E-41 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS15235 686132a2d4f642599bf3406e19226620 468 SUPERFAMILY SSF51905 3 124 1.6E-41 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS15235 686132a2d4f642599bf3406e19226620 468 Gene3D G3DSA:3.50.50.60 19 441 1.4E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 SUPERFAMILY SSF50249 137 200 3.67E-22 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 Gene3D G3DSA:2.40.50.140 116 203 1.9E-25 T 29-03-2018 Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 SMART SM00357 139 202 6.5E-25 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 ProSitePatterns PS00352 'Cold-shock' domain signature. 151 169 - T 29-03-2018 IPR019844 Cold-shock conserved site Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 PRINTS PR00050 Cold shock protein signature 175 193 1.9E-15 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 PRINTS PR00050 Cold shock protein signature 140 155 1.9E-15 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 PRINTS PR00050 Cold shock protein signature 160 169 1.9E-15 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS01615 070ac70e6b60b40d5306f3185c1f66fd 204 Pfam PF00313 'Cold-shock' DNA-binding domain 139 200 1.6E-25 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y880_RS19245 a4fbb42e8a977d6bb6861eb2bfd9f703 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 121 2.5E-16 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS19245 a4fbb42e8a977d6bb6861eb2bfd9f703 232 SUPERFAMILY SSF161098 16 212 2.49E-39 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS19245 a4fbb42e8a977d6bb6861eb2bfd9f703 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 225 4.9E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS19245 a4fbb42e8a977d6bb6861eb2bfd9f703 232 Gene3D G3DSA:1.10.3720.10 1 232 4.0E-39 T 29-03-2018 Y880_RS19725 382277ad9e6833744e14c462c35c8e0b 525 SUPERFAMILY SSF58104 77 347 2.35E-56 T 29-03-2018 Y880_RS19725 382277ad9e6833744e14c462c35c8e0b 525 SMART SM00283 85 343 6.7E-46 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS19725 382277ad9e6833744e14c462c35c8e0b 525 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 131 310 9.3E-41 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS19725 382277ad9e6833744e14c462c35c8e0b 525 Gene3D G3DSA:1.10.287.950 102 311 9.9E-44 T 29-03-2018 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 450 2.0E-148 T 29-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 391 2.3E-12 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 Gene3D G3DSA:3.40.1390.10 6 91 1.1E-25 T 29-03-2018 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 SUPERFAMILY SSF53244 320 450 5.26E-34 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 SUPERFAMILY SSF63418 5 98 7.06E-25 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 SUPERFAMILY SSF53623 103 318 6.02E-53 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 5 451 33.894 T 29-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 Pfam PF08245 Mur ligase middle domain 108 300 1.4E-47 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 Gene3D G3DSA:3.90.190.20 320 458 1.5E-42 T 29-03-2018 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 Pfam PF01225 Mur ligase family, catalytic domain 26 94 7.8E-10 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y880_RS20380 77ec8ac86e144313731ee11d295a2ca2 458 Gene3D G3DSA:3.40.1190.10 92 318 4.8E-55 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS01680 70e6b2a83f231ee94f08e5205761a3db 274 SUPERFAMILY SSF48452 150 265 3.8E-14 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS01680 70e6b2a83f231ee94f08e5205761a3db 274 Pfam PF13525 Outer membrane lipoprotein 153 274 6.2E-10 T 29-03-2018 Y880_RS01680 70e6b2a83f231ee94f08e5205761a3db 274 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 153 270 1.2E-41 T 29-03-2018 IPR014162 Cell division coordinator CpoB, C-terminal Y880_RS01680 70e6b2a83f231ee94f08e5205761a3db 274 Pfam PF16331 TolA binding protein trimerisation 61 116 4.4E-12 T 29-03-2018 IPR032519 YbgF, trimerisation domain GO:0070206 Y880_RS01680 70e6b2a83f231ee94f08e5205761a3db 274 Gene3D G3DSA:1.20.5.50 60 123 4.7E-4 T 29-03-2018 Y880_RS01680 70e6b2a83f231ee94f08e5205761a3db 274 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 1 273 18.769 T 29-03-2018 IPR034706 Cell division coordinator CpoB GO:0051301 Y880_RS01680 70e6b2a83f231ee94f08e5205761a3db 274 Gene3D G3DSA:1.25.40.10 154 274 4.0E-18 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS25935 1b4ff07d44c07c5d770e9c28f3abb2a6 479 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2 477 2.7E-175 T 29-03-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y880_RS25935 1b4ff07d44c07c5d770e9c28f3abb2a6 479 Gene3D G3DSA:2.60.120.10 346 457 1.2E-27 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS25935 1b4ff07d44c07c5d770e9c28f3abb2a6 479 Pfam PF01050 Mannose-6-phosphate isomerase 323 473 1.7E-67 T 29-03-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y880_RS25935 1b4ff07d44c07c5d770e9c28f3abb2a6 479 SUPERFAMILY SSF51182 189 477 4.12E-77 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS25935 1b4ff07d44c07c5d770e9c28f3abb2a6 479 SUPERFAMILY SSF53448 2 286 4.16E-65 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS25935 1b4ff07d44c07c5d770e9c28f3abb2a6 479 Pfam PF00483 Nucleotidyl transferase 4 290 8.1E-54 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y880_RS25935 1b4ff07d44c07c5d770e9c28f3abb2a6 479 Gene3D G3DSA:3.90.550.10 1 345 4.7E-89 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS25895 3ae2e475753d5bd02a2d9f9e79d8c111 142 SUPERFAMILY SSF103481 46 141 2.09E-20 T 29-03-2018 Y880_RS25895 3ae2e475753d5bd02a2d9f9e79d8c111 142 Pfam PF00892 EamA-like transporter family 4 139 2.6E-25 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS13930 f99f4195d0a1b90054d55a1a97105cde 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 77 2.4E-31 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Y880_RS13930 f99f4195d0a1b90054d55a1a97105cde 285 SUPERFAMILY SSF53697 93 273 3.27E-39 T 29-03-2018 Y880_RS13930 f99f4195d0a1b90054d55a1a97105cde 285 Gene3D G3DSA:3.40.50.10490 93 273 2.1E-37 T 29-03-2018 Y880_RS13930 f99f4195d0a1b90054d55a1a97105cde 285 Gene3D G3DSA:1.10.10.10 1 92 5.9E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13930 f99f4195d0a1b90054d55a1a97105cde 285 SUPERFAMILY SSF46689 1 78 2.51E-22 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS13930 f99f4195d0a1b90054d55a1a97105cde 285 Pfam PF01380 SIS domain 125 253 2.5E-21 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:3.30.499.10 2 227 1.6E-60 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 Pfam PF00694 Aconitase C-terminal domain 661 792 3.7E-30 T 29-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 SUPERFAMILY SSF53732 23 591 2.22E-184 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 SUPERFAMILY SSF52016 603 862 7.85E-68 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS00590 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:3.30.499.10 359 552 4.4E-55 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 469 482 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 281 294 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 205 220 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 267 280 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 191 204 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 162 170 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 407 418 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 138 151 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 360 374 1.4E-28 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:3.20.19.10 624 864 7.5E-68 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS00590 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:3.40.1060.10 228 358 1.9E-41 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 Pfam PF00330 Aconitase family (aconitate hydratase) 70 538 5.0E-149 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS00590 de92b8352764079aa52b115cd2119271 868 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 864 0.0 T 29-03-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 Y880_RS06470 afbcdaab0829abdbf005f8b51b3aeb89 559 Pfam PF08774 VRR-NUC domain 443 555 4.8E-33 T 29-03-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 Y880_RS06470 afbcdaab0829abdbf005f8b51b3aeb89 559 SMART SM00990 441 555 2.9E-49 T 29-03-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 Y880_RS15680 d108c91ab87b6e5f5e4ca6d3840a84c5 335 Gene3D G3DSA:3.40.190.10 24 129 2.4E-10 T 29-03-2018 Y880_RS15680 d108c91ab87b6e5f5e4ca6d3840a84c5 335 Gene3D G3DSA:3.40.190.10 130 326 2.7E-24 T 29-03-2018 Y880_RS15680 d108c91ab87b6e5f5e4ca6d3840a84c5 335 SUPERFAMILY SSF53850 36 256 2.82E-31 T 29-03-2018 Y880_RS15680 d108c91ab87b6e5f5e4ca6d3840a84c5 335 Pfam PF09084 NMT1/THI5 like 39 250 6.6E-31 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS16150 eae65437ed93f03f672c12b3ab00c495 50 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.637 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16150 eae65437ed93f03f672c12b3ab00c495 50 SUPERFAMILY SSF57840 1 41 3.92E-13 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16150 eae65437ed93f03f672c12b3ab00c495 50 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 1.3E-7 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16150 eae65437ed93f03f672c12b3ab00c495 50 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16150 eae65437ed93f03f672c12b3ab00c495 50 Pfam PF00444 Ribosomal protein L36 1 41 1.2E-15 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS04715 6e374accd2f16b385c7fbdf080230e7f 109 SUPERFAMILY SSF103481 12 108 3.01E-17 T 29-03-2018 Y880_RS04715 6e374accd2f16b385c7fbdf080230e7f 109 Pfam PF00893 Small Multidrug Resistance protein 5 99 1.5E-26 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 SUPERFAMILY SSF53474 8 262 2.46E-60 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 3.0E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 209 223 3.0E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 3.0E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 3.0E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 15 262 3.2E-81 T 29-03-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 Gene3D G3DSA:3.40.50.1820 3 265 2.2E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29090 513f39b5cfc61c8f04180d786a2daf7b 265 Pfam PF00561 alpha/beta hydrolase fold 35 143 5.8E-18 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 SUPERFAMILY SSF103515 681 995 1.83E-66 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 SUPERFAMILY SSF52743 49 369 5.89E-60 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 521 995 1.0E-48 T 29-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 Pfam PF03797 Autotransporter beta-domain 723 975 1.2E-55 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 Gene3D G3DSA:2.40.128.130 672 995 3.0E-58 T 29-03-2018 Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 SMART SM00869 719 985 2.0E-52 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 306 316 - T 29-03-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 PRINTS PR00723 Subtilisin serine protease family (S8) signature 118 131 9.2E-17 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 PRINTS PR00723 Subtilisin serine protease family (S8) signature 305 321 9.2E-17 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 PRINTS PR00723 Subtilisin serine protease family (S8) signature 70 89 9.2E-17 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 Gene3D G3DSA:3.40.50.200 39 371 6.6E-62 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 122 132 - T 29-03-2018 IPR022398 Peptidase S8, subtilisin, His-active site Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 455 485 8.6E-11 T 29-03-2018 IPR013425 Autotransporter-associated beta strand repeat Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 Pfam PF12951 Passenger-associated-transport-repeat 456 485 5.8E-8 T 29-03-2018 IPR013425 Autotransporter-associated beta strand repeat Y880_RS15790 cb3e0f939a920da3808e9b0cc4e9e0f8 995 Pfam PF00082 Subtilase family 70 359 3.9E-38 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y880_RS05580 e9eb9eceae99b993e4ae984d276be535 109 SUPERFAMILY SSF48452 2 109 2.37E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS05580 e9eb9eceae99b993e4ae984d276be535 109 Gene3D G3DSA:1.25.40.10 1 109 1.9E-14 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS05580 e9eb9eceae99b993e4ae984d276be535 109 PIRSF PIRSF017117 1 109 8.4E-42 T 29-03-2018 IPR016684 Type III secretion system chaperone, YscY Y880_RS17110 a70cc30f337e22d86e02d479497b0163 253 Gene3D G3DSA:3.30.1380.10 44 227 1.1E-42 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Y880_RS17110 a70cc30f337e22d86e02d479497b0163 253 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 23 227 24.655 T 29-03-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Y880_RS17110 a70cc30f337e22d86e02d479497b0163 253 Pfam PF01427 D-ala-D-ala dipeptidase 72 223 4.3E-21 T 29-03-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Y880_RS17110 a70cc30f337e22d86e02d479497b0163 253 SUPERFAMILY SSF55166 23 227 6.28E-52 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Y880_RS28945 86df30bb3756ff04ec9b3a5e82fd38e6 733 Gene3D G3DSA:1.25.40.10 107 709 1.2E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS28945 86df30bb3756ff04ec9b3a5e82fd38e6 733 Pfam PF13515 Fusaric acid resistance protein-like 412 529 2.1E-21 T 29-03-2018 Y880_RS28945 86df30bb3756ff04ec9b3a5e82fd38e6 733 Pfam PF12805 FUSC-like inner membrane protein yccS 71 354 1.3E-114 T 29-03-2018 IPR032692 Integral membrane protein YccS, N-terminal Y880_RS28945 86df30bb3756ff04ec9b3a5e82fd38e6 733 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 14 715 3.1E-235 T 29-03-2018 IPR010019 Integral membrane protein, YccS Y880_RS28945 86df30bb3756ff04ec9b3a5e82fd38e6 733 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 717 0.0 T 29-03-2018 IPR010020 Integral membrane protein, YccS/YhfK Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 158 3.0E-17 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 Pfam PF00593 TonB dependent receptor 332 864 8.7E-41 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 Gene3D G3DSA:2.40.170.20 219 866 1.7E-69 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 SUPERFAMILY SSF56935 754 866 2.67E-86 T 29-03-2018 Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 SUPERFAMILY SSF56935 38 185 2.67E-86 T 29-03-2018 Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 SUPERFAMILY SSF56935 213 482 2.67E-86 T 29-03-2018 Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 SUPERFAMILY SSF56935 579 722 2.67E-86 T 29-03-2018 Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 849 866 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS23000 f2d199a856bbe644abd6868d7bbf3700 866 Gene3D G3DSA:2.170.130.10 26 218 1.5E-17 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 SUPERFAMILY SSF46565 130 244 3.79E-18 T 29-03-2018 IPR001623 DnaJ domain Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 Gene3D G3DSA:1.10.287.110 180 250 3.2E-12 T 29-03-2018 IPR001623 DnaJ domain Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 SMART SM00271 185 250 2.3E-10 T 29-03-2018 IPR001623 DnaJ domain Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 Gene3D G3DSA:1.10.3680.10 45 179 7.5E-13 T 29-03-2018 IPR029024 TerB-like Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 PRINTS PR00625 DnaJ domain signature 230 250 2.7E-6 T 29-03-2018 IPR001623 DnaJ domain Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 PRINTS PR00625 DnaJ domain signature 206 221 2.7E-6 T 29-03-2018 IPR001623 DnaJ domain Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 PRINTS PR00625 DnaJ domain signature 188 206 2.7E-6 T 29-03-2018 IPR001623 DnaJ domain Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 Pfam PF00226 DnaJ domain 190 245 2.9E-8 T 29-03-2018 IPR001623 DnaJ domain Y880_RS29700 6494e765d38196e4b0efa62ab8754b96 252 SUPERFAMILY SSF158682 21 175 2.22E-11 T 29-03-2018 Y880_RS09105 b4e8d0343bbb779157e1a9249808e8d0 375 SUPERFAMILY SSF51695 41 357 2.33E-59 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS09105 b4e8d0343bbb779157e1a9249808e8d0 375 Gene3D G3DSA:3.20.20.190 24 367 3.3E-63 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS09105 b4e8d0343bbb779157e1a9249808e8d0 375 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 48 351 6.3E-35 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y880_RS13405 93d9b11d0f5e662ae8e5057ee1896cad 365 SUPERFAMILY SSF110296 78 323 1.05E-50 T 29-03-2018 Y880_RS13405 93d9b11d0f5e662ae8e5057ee1896cad 365 Pfam PF15899 BNR-Asp box repeat 265 278 0.06 T 29-03-2018 IPR002860 BNR repeat Y880_RS13405 93d9b11d0f5e662ae8e5057ee1896cad 365 Gene3D G3DSA:2.130.10.10 70 276 5.7E-36 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS13405 93d9b11d0f5e662ae8e5057ee1896cad 365 Pfam PF14870 Photosynthesis system II assembly factor YCF48 151 237 5.7E-16 T 29-03-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain Y880_RS13405 93d9b11d0f5e662ae8e5057ee1896cad 365 Gene3D G3DSA:2.120.10.10 277 359 1.1E-10 T 29-03-2018 Y880_RS26350 c3bc7757bad6ef65f768acd1c13c2dfc 322 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 237 318 4.6E-8 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS26350 c3bc7757bad6ef65f768acd1c13c2dfc 322 Gene3D G3DSA:3.40.50.300 5 169 2.3E-22 T 29-03-2018 Y880_RS26350 c3bc7757bad6ef65f768acd1c13c2dfc 322 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 168 2.7E-38 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y880_RS26350 c3bc7757bad6ef65f768acd1c13c2dfc 322 SMART SM00833 235 318 1.3E-6 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS26350 c3bc7757bad6ef65f768acd1c13c2dfc 322 SUPERFAMILY SSF52540 4 165 2.65E-23 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12760 738350cd631a08f0e7c1d8f67a4baa84 189 Gene3D G3DSA:3.10.540.10 8 88 3.2E-38 T 29-03-2018 Y880_RS12760 738350cd631a08f0e7c1d8f67a4baa84 189 PIRSF PIRSF029557 1 189 2.7E-90 T 29-03-2018 IPR010707 Protein of unknown function DUF1285 Y880_RS12760 738350cd631a08f0e7c1d8f67a4baa84 189 Gene3D G3DSA:2.20.70.10 163 188 3.9E-12 T 29-03-2018 Y880_RS12760 738350cd631a08f0e7c1d8f67a4baa84 189 Gene3D G3DSA:2.30.270.10 89 162 2.8E-30 T 29-03-2018 IPR023361 Protein of unknown function DUF1285, beta-roll domain Y880_RS12760 738350cd631a08f0e7c1d8f67a4baa84 189 Pfam PF06938 Protein of unknown function (DUF1285) 38 182 3.4E-60 T 29-03-2018 IPR010707 Protein of unknown function DUF1285 Y880_RS14780 30c1e8d501de91daf2aeb6af61a361f2 360 Gene3D G3DSA:1.20.5.320 235 331 3.0E-6 T 29-03-2018 Y880_RS14780 30c1e8d501de91daf2aeb6af61a361f2 360 Gene3D G3DSA:3.10.350.10 149 207 1.6E-5 T 29-03-2018 Y880_RS14780 30c1e8d501de91daf2aeb6af61a361f2 360 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 157 210 1.8E-12 T 29-03-2018 IPR020012 Motility protein FimV, N-terminal Y880_RS17545 3fcac5114b5a51883a15e567af7c52c0 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 257 2.5E-62 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS17545 3fcac5114b5a51883a15e567af7c52c0 263 Gene3D G3DSA:3.40.190.10 143 263 7.7E-19 T 29-03-2018 Y880_RS17545 3fcac5114b5a51883a15e567af7c52c0 263 Gene3D G3DSA:3.40.190.10 20 142 9.4E-36 T 29-03-2018 Y880_RS17545 3fcac5114b5a51883a15e567af7c52c0 263 SUPERFAMILY SSF53850 13 260 1.36E-65 T 29-03-2018 Y880_RS17545 3fcac5114b5a51883a15e567af7c52c0 263 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 10 256 3.0E-81 T 29-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 Y880_RS17545 3fcac5114b5a51883a15e567af7c52c0 263 SMART SM00062 30 259 1.7E-72 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS21225 d17292f615b53c88f678b6f0b0892cd5 162 Pfam PF11220 Protein of unknown function (DUF3015) 19 158 4.7E-56 T 29-03-2018 IPR021383 Protein of unknown function DUF3015 Y880_RS10975 27b025346e0d8a2608b812c725a4840b 361 Pfam PF05359 Domain of Unknown Function (DUF748) 139 275 8.1E-13 T 29-03-2018 IPR008023 Protein of unknown function DUF748 Y880_RS22600 f418b7f78cbb7054c1351b997fadd156 324 SUPERFAMILY SSF53448 17 275 8.81E-39 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS22600 f418b7f78cbb7054c1351b997fadd156 324 Pfam PF00535 Glycosyl transferase family 2 18 179 1.2E-27 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS22600 f418b7f78cbb7054c1351b997fadd156 324 Gene3D G3DSA:3.90.550.10 5 229 7.4E-31 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS28590 d6827c051ee84fd3a703129a7820fd81 197 Pfam PF01725 Ham1 family 7 193 5.0E-56 T 29-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 Y880_RS28590 d6827c051ee84fd3a703129a7820fd81 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 7 195 5.8E-57 T 29-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 Y880_RS28590 d6827c051ee84fd3a703129a7820fd81 197 SUPERFAMILY SSF52972 4 195 2.62E-68 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y880_RS28590 d6827c051ee84fd3a703129a7820fd81 197 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 5 197 48.73 T 29-03-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 Y880_RS28590 d6827c051ee84fd3a703129a7820fd81 197 Gene3D G3DSA:3.90.950.10 1 196 2.6E-74 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y880_RS14985 4410b03a1b0c58ebe74983d7e8e7e0fe 271 SMART SM00382 44 242 2.3E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS14985 4410b03a1b0c58ebe74983d7e8e7e0fe 271 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 18 269 2.2E-117 T 29-03-2018 IPR012700 Phosphonate C-P lyase system, PhnK Y880_RS14985 4410b03a1b0c58ebe74983d7e8e7e0fe 271 Gene3D G3DSA:3.40.50.300 16 271 5.2E-60 T 29-03-2018 Y880_RS14985 4410b03a1b0c58ebe74983d7e8e7e0fe 271 SUPERFAMILY SSF52540 16 267 7.33E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14985 4410b03a1b0c58ebe74983d7e8e7e0fe 271 Pfam PF00005 ABC transporter 36 192 2.5E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS14985 4410b03a1b0c58ebe74983d7e8e7e0fe 271 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS14985 4410b03a1b0c58ebe74983d7e8e7e0fe 271 PIRSF PIRSF037116 7 271 2.9E-144 T 29-03-2018 IPR012700 Phosphonate C-P lyase system, PhnK Y880_RS13125 6450b804e8b1ec7f686a612a8c23d069 519 SUPERFAMILY SSF53067 6 257 5.51E-57 T 29-03-2018 Y880_RS13125 6450b804e8b1ec7f686a612a8c23d069 519 SUPERFAMILY SSF53067 258 500 8.03E-53 T 29-03-2018 Y880_RS13125 6450b804e8b1ec7f686a612a8c23d069 519 Gene3D G3DSA:3.30.420.40 256 516 1.6E-49 T 29-03-2018 Y880_RS13125 6450b804e8b1ec7f686a612a8c23d069 519 PIRSF PIRSF000538 4 513 5.0E-112 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS13125 6450b804e8b1ec7f686a612a8c23d069 519 Gene3D G3DSA:3.30.420.40 1 255 2.7E-60 T 29-03-2018 Y880_RS13125 6450b804e8b1ec7f686a612a8c23d069 519 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 254 3.6E-44 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y880_RS13125 6450b804e8b1ec7f686a612a8c23d069 519 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 457 5.1E-29 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y880_RS27150 9da076514e60de6fc56a96ebe0bfbe9a 184 PIRSF PIRSF005413 1 182 6.4E-64 T 29-03-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27150 9da076514e60de6fc56a96ebe0bfbe9a 184 SUPERFAMILY SSF110111 54 174 1.12E-46 T 29-03-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27150 9da076514e60de6fc56a96ebe0bfbe9a 184 Gene3D G3DSA:2.60.370.10 55 176 1.1E-43 T 29-03-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27150 9da076514e60de6fc56a96ebe0bfbe9a 184 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 29 171 1.6E-49 T 29-03-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS17070 1097218081802e36b23b48f715939486 380 PRINTS PR01270 Histone deacetylase superfamily signature 140 163 8.9E-15 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS17070 1097218081802e36b23b48f715939486 380 PRINTS PR01270 Histone deacetylase superfamily signature 259 269 8.9E-15 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS17070 1097218081802e36b23b48f715939486 380 PRINTS PR01270 Histone deacetylase superfamily signature 174 189 8.9E-15 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS17070 1097218081802e36b23b48f715939486 380 Gene3D G3DSA:3.40.800.20 32 367 6.6E-103 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS17070 1097218081802e36b23b48f715939486 380 SUPERFAMILY SSF52768 2 355 4.8E-105 T 29-03-2018 Y880_RS17070 1097218081802e36b23b48f715939486 380 Pfam PF00850 Histone deacetylase domain 42 328 1.3E-77 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS14495 3f924c378b29cf5257de803e781d0d3a 167 Gene3D G3DSA:3.40.50.850 8 167 2.0E-18 T 29-03-2018 Y880_RS14495 3f924c378b29cf5257de803e781d0d3a 167 Pfam PF00857 Isochorismatase family 72 162 6.0E-10 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS14495 3f924c378b29cf5257de803e781d0d3a 167 SUPERFAMILY SSF52499 8 165 5.36E-22 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS00050 c825199cc5e2016379f4edc6069e075c 213 SUPERFAMILY SSF54523 17 71 1.65E-5 T 29-03-2018 Y880_RS00050 c825199cc5e2016379f4edc6069e075c 213 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 36 1.3E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00050 c825199cc5e2016379f4edc6069e075c 213 SUPERFAMILY SSF54523 55 208 9.42E-9 T 29-03-2018 Y880_RS00050 c825199cc5e2016379f4edc6069e075c 213 Gene3D G3DSA:3.10.610.10 47 159 1.3E-11 T 29-03-2018 Y880_RS00050 c825199cc5e2016379f4edc6069e075c 213 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 15 35 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS00050 c825199cc5e2016379f4edc6069e075c 213 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 36 3.5E-7 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 Pfam PF02780 Transketolase, C-terminal domain 500 616 3.8E-27 T 29-03-2018 IPR033248 Transketolase, C-terminal domain Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 18 289 1.2E-120 T 29-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 SUPERFAMILY SSF52518 321 508 1.23E-56 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 17 625 46.223 T 29-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 Pfam PF02779 Transketolase, pyrimidine binding domain 325 485 1.8E-37 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 Gene3D G3DSA:3.40.50.970 6 303 3.2E-81 T 29-03-2018 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 SUPERFAMILY SSF52922 496 625 2.62E-33 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 Gene3D G3DSA:3.40.50.970 304 491 2.3E-59 T 29-03-2018 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 Gene3D G3DSA:3.40.50.920 500 626 5.9E-35 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 ProSitePatterns PS00802 Transketolase signature 2. 430 446 - T 29-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 22 624 2.0E-266 T 29-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 SUPERFAMILY SSF52518 15 206 7.41E-77 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 SUPERFAMILY SSF52518 250 386 7.41E-77 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS18460 95205bc345d880a4f5a4a56c126d2d11 627 SMART SM00861 324 488 8.8E-63 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS02410 02c919327c40d8f87863905698de5317 236 SUPERFAMILY SSF55174 5 49 1.44E-10 T 29-03-2018 Y880_RS02410 02c919327c40d8f87863905698de5317 236 Gene3D G3DSA:3.30.70.580 62 154 1.9E-12 T 29-03-2018 Y880_RS02410 02c919327c40d8f87863905698de5317 236 Gene3D G3DSA:3.10.290.10 2 61 4.2E-9 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS02410 02c919327c40d8f87863905698de5317 236 SUPERFAMILY SSF55120 65 235 1.13E-20 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS02410 02c919327c40d8f87863905698de5317 236 SMART SM00363 5 65 3.4E-5 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS02410 02c919327c40d8f87863905698de5317 236 Gene3D G3DSA:3.30.70.1560 155 213 9.4E-16 T 29-03-2018 Y880_RS02410 02c919327c40d8f87863905698de5317 236 Pfam PF01479 S4 domain 6 45 1.0E-6 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 Pfam PF04552 Sigma-54, DNA binding domain 337 495 5.1E-72 T 29-03-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 475 482 - T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 Gene3D G3DSA:1.10.10.10 342 433 1.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 Pfam PF04963 Sigma-54 factor, core binding domain 130 323 4.3E-63 T 29-03-2018 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 PIRSF PIRSF000774 1 497 2.3E-157 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 384 403 - T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 412 423 1.4E-32 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 396 408 1.4E-32 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 470 488 1.4E-32 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 206 223 1.4E-32 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 494 1.7E-159 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS20615 5bf60887ecf851fdf77990d038adc04f 497 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 8.3E-17 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 SMART SM00091 52 120 5.8E-5 T 29-03-2018 IPR000014 PAS domain Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 217 369 9.9E-46 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 SUPERFAMILY SSF55073 225 370 1.26E-43 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 Pfam PF00990 Diguanylate cyclase, GGDEF domain 221 369 2.9E-44 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 Gene3D G3DSA:3.30.70.270 203 376 1.4E-50 T 29-03-2018 Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 Gene3D G3DSA:3.30.450.20 25 197 6.6E-26 T 29-03-2018 Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 Pfam PF08447 PAS fold 75 163 5.6E-24 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 SMART SM00267 209 376 2.8E-57 T 29-03-2018 IPR000160 GGDEF domain Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 SUPERFAMILY SSF55785 58 171 1.06E-18 T 29-03-2018 IPR000014 PAS domain Y880_RS28340 fc434a65b15912faea166daa624bf3bd 376 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 51 177 1.1E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS13520 60c64b33df5d64cf7b6ed800a3a94ef5 129 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13520 60c64b33df5d64cf7b6ed800a3a94ef5 129 SUPERFAMILY SSF54523 38 124 5.49E-22 T 29-03-2018 Y880_RS13520 60c64b33df5d64cf7b6ed800a3a94ef5 129 Pfam PF02501 Type II secretion system (T2SS), protein I 40 125 1.2E-29 T 29-03-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 Y880_RS13520 60c64b33df5d64cf7b6ed800a3a94ef5 129 TIGRFAM TIGR01707 gspI: type II secretion system protein I 6 105 2.6E-45 T 29-03-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 Y880_RS13520 60c64b33df5d64cf7b6ed800a3a94ef5 129 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 7.1E-8 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13520 60c64b33df5d64cf7b6ed800a3a94ef5 129 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 5.9E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13520 60c64b33df5d64cf7b6ed800a3a94ef5 129 Gene3D G3DSA:3.30.1300.30 31 129 3.4E-29 T 29-03-2018 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 SUPERFAMILY SSF56935 754 928 2.01E-95 T 29-03-2018 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 SUPERFAMILY SSF56935 504 714 2.01E-95 T 29-03-2018 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 SUPERFAMILY SSF56935 82 278 2.01E-95 T 29-03-2018 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 SUPERFAMILY SSF56935 341 470 2.01E-95 T 29-03-2018 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 Pfam PF00593 TonB dependent receptor 368 926 2.4E-44 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 SMART SM00965 9 59 8.3E-12 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 Gene3D G3DSA:2.170.130.10 72 214 6.8E-33 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 Pfam PF07715 TonB-dependent Receptor Plug Domain 95 213 8.5E-23 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 Pfam PF07660 Secretin and TonB N terminus short domain 11 58 3.9E-8 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS07455 10a9daad2454b6acc2b7866a6432f27f 930 Gene3D G3DSA:2.40.170.20 215 928 1.9E-65 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS16325 c81cbaed0ca34733f9baac241f94407b 94 Hamap MF_00599 Cell division protein FtsB [ftsB]. 2 94 32.351 T 29-03-2018 IPR023081 Cell division protein FtsB Y880_RS16325 c81cbaed0ca34733f9baac241f94407b 94 Gene3D G3DSA:1.20.5.340 28 78 3.2E-5 T 29-03-2018 Y880_RS16325 c81cbaed0ca34733f9baac241f94407b 94 Pfam PF04977 Septum formation initiator 17 92 2.7E-23 T 29-03-2018 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 Y880_RS13645 6d33dccc3d9153af26576f1701770ed3 303 SUPERFAMILY SSF53850 94 298 1.23E-42 T 29-03-2018 Y880_RS13645 6d33dccc3d9153af26576f1701770ed3 303 Gene3D G3DSA:1.10.10.10 7 92 5.4E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13645 6d33dccc3d9153af26576f1701770ed3 303 SUPERFAMILY SSF46785 10 116 1.67E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13645 6d33dccc3d9153af26576f1701770ed3 303 Gene3D G3DSA:3.40.190.10 96 180 1.6E-17 T 29-03-2018 Y880_RS13645 6d33dccc3d9153af26576f1701770ed3 303 Gene3D G3DSA:3.40.190.10 181 266 1.6E-22 T 29-03-2018 Y880_RS13645 6d33dccc3d9153af26576f1701770ed3 303 Pfam PF03466 LysR substrate binding domain 92 298 4.5E-41 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS13645 6d33dccc3d9153af26576f1701770ed3 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 67 1.2E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24355 4cf7d99660ae34415f554bbff6a72bcf 231 Gene3D G3DSA:1.10.3720.10 3 225 2.6E-41 T 29-03-2018 Y880_RS24355 4cf7d99660ae34415f554bbff6a72bcf 231 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 117 1.7E-17 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS24355 4cf7d99660ae34415f554bbff6a72bcf 231 SUPERFAMILY SSF161098 11 208 1.74E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24355 4cf7d99660ae34415f554bbff6a72bcf 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 221 1.1E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 SUPERFAMILY SSF55594 1 88 2.22E-26 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 Gene3D G3DSA:3.30.1340.10 1 88 1.1E-27 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 40 55 - T 29-03-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 29-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 PRINTS PR00107 Phosphocarrier protein signature 13 29 5.9E-10 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 PRINTS PR00107 Phosphocarrier protein signature 54 71 5.9E-10 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 PRINTS PR00107 Phosphocarrier protein signature 39 54 5.9E-10 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 83 2.2E-25 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like Y880_RS20635 b1a2478387312fb65a670dc47730f730 90 Pfam PF00381 PTS HPr component phosphorylation site 5 83 3.5E-26 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like Y880_RS29720 866c16d22541eb827ec235cb37f68324 344 Pfam PF13416 Bacterial extracellular solute-binding protein 43 308 1.3E-42 T 29-03-2018 Y880_RS29720 866c16d22541eb827ec235cb37f68324 344 Gene3D G3DSA:3.40.190.10 25 138 4.7E-6 T 29-03-2018 Y880_RS29720 866c16d22541eb827ec235cb37f68324 344 SUPERFAMILY SSF53850 25 341 9.83E-65 T 29-03-2018 Y880_RS29720 866c16d22541eb827ec235cb37f68324 344 Gene3D G3DSA:3.40.190.10 139 297 2.2E-28 T 29-03-2018 Y880_RS17955 4a33ee75a59d44aa9b1b7819d94ed13a 342 Pfam PF00881 Nitroreductase family 100 229 7.0E-6 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y880_RS17955 4a33ee75a59d44aa9b1b7819d94ed13a 342 Gene3D G3DSA:3.40.109.10 5 234 6.2E-24 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS17955 4a33ee75a59d44aa9b1b7819d94ed13a 342 SUPERFAMILY SSF55469 100 119 1.06E-7 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS17955 4a33ee75a59d44aa9b1b7819d94ed13a 342 SUPERFAMILY SSF55469 154 229 1.06E-7 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS28070 031453ca8bbe80035d7213149e19c59d 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 3.7E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS28070 031453ca8bbe80035d7213149e19c59d 320 Pfam PF03466 LysR substrate binding domain 99 300 2.8E-27 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS28070 031453ca8bbe80035d7213149e19c59d 320 SUPERFAMILY SSF46785 12 97 1.5E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28070 031453ca8bbe80035d7213149e19c59d 320 Gene3D G3DSA:3.40.190.10 91 210 5.7E-16 T 29-03-2018 Y880_RS28070 031453ca8bbe80035d7213149e19c59d 320 SUPERFAMILY SSF53850 104 306 9.05E-26 T 29-03-2018 Y880_RS28070 031453ca8bbe80035d7213149e19c59d 320 Gene3D G3DSA:1.10.10.10 8 90 4.6E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS21090 9b3974a4c6a2f92ab765da5a218d6b08 185 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 1.0E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21090 9b3974a4c6a2f92ab765da5a218d6b08 185 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 12 158 9.1E-47 T 29-03-2018 IPR013362 Pilus modification type IV, PilV Y880_RS21090 9b3974a4c6a2f92ab765da5a218d6b08 185 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 34 3.2E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS03510 042e92ff3bfe2ce09746f8f4f28067b7 732 SUPERFAMILY SSF56935 35 732 9.68E-132 T 29-03-2018 Y880_RS03510 042e92ff3bfe2ce09746f8f4f28067b7 732 Gene3D G3DSA:2.170.130.10 35 182 4.6E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS03510 042e92ff3bfe2ce09746f8f4f28067b7 732 Pfam PF00593 TonB dependent receptor 247 728 7.6E-62 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03510 042e92ff3bfe2ce09746f8f4f28067b7 732 Gene3D G3DSA:2.40.170.20 183 732 9.3E-83 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03510 042e92ff3bfe2ce09746f8f4f28067b7 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 72 732 1.5E-110 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS03510 042e92ff3bfe2ce09746f8f4f28067b7 732 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 715 732 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS03510 042e92ff3bfe2ce09746f8f4f28067b7 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 169 9.7E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 184 1.3E-57 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 SUPERFAMILY SSF48179 186 290 1.45E-31 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 SUPERFAMILY SSF48179 413 497 1.45E-20 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 Gene3D G3DSA:3.40.50.720 2 185 1.2E-49 T 29-03-2018 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 SUPERFAMILY SSF51735 2 186 1.75E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS05185 977ec2797705d853a59164178cf893f0 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 284 9.3E-32 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 414 497 5.0E-22 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 Gene3D G3DSA:1.10.1040.10 186 289 1.5E-30 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS05185 977ec2797705d853a59164178cf893f0 509 Gene3D G3DSA:1.10.1040.10 412 504 2.3E-18 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 SMART SM00448 3 119 2.0E-16 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 Gene3D G3DSA:1.10.10.10 128 213 4.8E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 Pfam PF00072 Response regulator receiver domain 5 119 7.3E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 SUPERFAMILY SSF46894 142 212 9.86E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 SMART SM00421 150 207 2.4E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 Gene3D G3DSA:3.40.50.2300 2 127 2.9E-23 T 29-03-2018 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 205 8.5E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 1.8E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 1.8E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 1.8E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS16725 c0b4f337c54fe692557584c98d382a29 213 SUPERFAMILY SSF52172 1 127 1.17E-24 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS27895 899360508a3427c32d29be4371c47a9d 418 SUPERFAMILY SSF56300 137 301 1.17E-31 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS27895 899360508a3427c32d29be4371c47a9d 418 SUPERFAMILY SSF56300 11 107 1.17E-31 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS27895 899360508a3427c32d29be4371c47a9d 418 Gene3D G3DSA:3.60.21.10 9 331 6.5E-29 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS27895 899360508a3427c32d29be4371c47a9d 418 Pfam PF00149 Calcineurin-like phosphoesterase 11 258 4.6E-14 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 Gene3D G3DSA:3.40.190.10 93 187 7.3E-21 T 29-03-2018 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 SUPERFAMILY SSF53850 93 299 7.42E-41 T 29-03-2018 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 Pfam PF03466 LysR substrate binding domain 99 301 4.6E-23 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 Gene3D G3DSA:1.10.10.10 2 89 5.0E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 4.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 4.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 4.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 Gene3D G3DSA:3.40.190.10 188 273 1.2E-9 T 29-03-2018 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 4.0E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS14680 2fd7d146637d1401e26500313dd3dfcf 304 SUPERFAMILY SSF46785 7 87 2.81E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23060 4fd27d286117689be0e232fdecef9595 238 Pfam PF00005 ABC transporter 21 165 4.0E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS23060 4fd27d286117689be0e232fdecef9595 238 SUPERFAMILY SSF52540 5 235 5.75E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23060 4fd27d286117689be0e232fdecef9595 238 Gene3D G3DSA:3.40.50.300 2 237 2.0E-55 T 29-03-2018 Y880_RS23060 4fd27d286117689be0e232fdecef9595 238 SMART SM00382 30 221 6.0E-5 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS23060 4fd27d286117689be0e232fdecef9595 238 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS23060 4fd27d286117689be0e232fdecef9595 238 PIRSF PIRSF039137 1 238 2.8E-101 T 29-03-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Y880_RS09245 f71e2e452636b9a70316f80f5d18ca3e 156 Gene3D G3DSA:1.10.150.120 74 156 3.1E-28 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS09245 f71e2e452636b9a70316f80f5d18ca3e 156 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS09245 f71e2e452636b9a70316f80f5d18ca3e 156 SUPERFAMILY SSF54292 2 76 1.19E-25 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS09245 f71e2e452636b9a70316f80f5d18ca3e 156 Pfam PF01799 [2Fe-2S] binding domain 72 144 4.2E-25 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS09245 f71e2e452636b9a70316f80f5d18ca3e 156 SUPERFAMILY SSF47741 83 152 6.28E-29 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS09245 f71e2e452636b9a70316f80f5d18ca3e 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 59 5.6E-7 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS09245 f71e2e452636b9a70316f80f5d18ca3e 156 Gene3D G3DSA:3.10.20.30 1 73 1.2E-24 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS24640 3bbe32fe7915080dc5f9248e72216b9a 225 Pfam PF01865 Protein of unknown function DUF47 7 224 3.7E-60 T 29-03-2018 IPR018445 Putative phosphate transport regulator Y880_RS24640 3bbe32fe7915080dc5f9248e72216b9a 225 SUPERFAMILY SSF109755 37 209 1.92E-10 T 29-03-2018 Y880_RS24640 3bbe32fe7915080dc5f9248e72216b9a 225 Gene3D G3DSA:1.20.58.220 117 225 2.4E-8 T 29-03-2018 Y880_RS24640 3bbe32fe7915080dc5f9248e72216b9a 225 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 8 224 2.9E-55 T 29-03-2018 IPR002727 Protein of unknown function DUF47 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 3.3E-69 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 Pfam PF13416 Bacterial extracellular solute-binding protein 44 331 8.2E-33 T 29-03-2018 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 Gene3D G3DSA:3.40.190.10 202 332 5.7E-21 T 29-03-2018 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 SUPERFAMILY SSF53850 28 366 1.7E-105 T 29-03-2018 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 Gene3D G3DSA:3.40.190.10 20 201 3.3E-35 T 29-03-2018 Y880_RS28125 ec5e8fc96601812bc889c6b5bc9a69d3 367 PIRSF PIRSF019574 1 367 5.8E-144 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS16525 fd61b0c7d6745cb6d8f13d681509127e 132 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 25 118 2.8E-33 T 29-03-2018 Y880_RS19075 be295faa1302faba6a2ee674cc261519 108 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 4 106 9.0E-16 T 29-03-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like Y880_RS19075 be295faa1302faba6a2ee674cc261519 108 Gene3D G3DSA:3.10.490.10 1 108 8.6E-20 T 29-03-2018 Y880_RS19075 be295faa1302faba6a2ee674cc261519 108 SUPERFAMILY SSF110857 1 106 3.92E-21 T 29-03-2018 IPR013024 Gamma-glutamyl cyclotransferase-like Y880_RS05860 535af7bc95747d3069521c6780080cbe 267 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 57 234 1.5E-47 T 29-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 Y880_RS05860 535af7bc95747d3069521c6780080cbe 267 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 18 260 36.625 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 Y880_RS05860 535af7bc95747d3069521c6780080cbe 267 Gene3D G3DSA:3.40.50.620 28 249 3.8E-43 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS05860 535af7bc95747d3069521c6780080cbe 267 PIRSF PIRSF000857 10 264 5.8E-81 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 Y880_RS05860 535af7bc95747d3069521c6780080cbe 267 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 42 259 1.4E-50 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 Y880_RS05860 535af7bc95747d3069521c6780080cbe 267 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 63 258 1.4E-86 T 29-03-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 Y880_RS05860 535af7bc95747d3069521c6780080cbe 267 SUPERFAMILY SSF52402 32 222 1.87E-46 T 29-03-2018 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:2.40.30.110 286 373 1.7E-21 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Pfam PF01571 Aminomethyltransferase folate-binding domain 11 257 8.3E-91 T 29-03-2018 IPR006222 Glycine cleavage T-protein-like, N-terminal Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 PIRSF PIRSF006487 1 373 8.3E-83 T 29-03-2018 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:3.30.1360.120 6 134 1.9E-34 T 29-03-2018 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 SUPERFAMILY SSF103025 6 286 7.22E-92 T 29-03-2018 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:3.30.1360.120 135 234 3.3E-31 T 29-03-2018 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:4.10.1250.10 235 283 2.7E-20 T 29-03-2018 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 7 367 1.5E-107 T 29-03-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 270 363 7.9E-22 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y880_RS09565 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 SUPERFAMILY SSF101790 278 372 8.5E-25 T 29-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain Y880_RS15630 a1812f0edc6cace3843c1c773a21e568 321 Gene3D G3DSA:3.10.180.10 208 294 4.4E-8 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15630 a1812f0edc6cace3843c1c773a21e568 321 Gene3D G3DSA:3.10.180.10 1 56 0.0059 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15630 a1812f0edc6cace3843c1c773a21e568 321 Gene3D G3DSA:3.10.180.10 57 207 2.2E-21 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15630 a1812f0edc6cace3843c1c773a21e568 321 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 152 265 3.4E-14 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS15630 a1812f0edc6cace3843c1c773a21e568 321 SUPERFAMILY SSF54593 1 273 1.26E-32 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS02555 8404c08c281530fea8d15a07d08fb7c9 291 Pfam PF01965 DJ-1/PfpI family 77 196 3.6E-7 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS02555 8404c08c281530fea8d15a07d08fb7c9 291 SUPERFAMILY SSF52317 50 285 1.15E-52 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS02555 8404c08c281530fea8d15a07d08fb7c9 291 PIRSF PIRSF037798 1 291 1.5E-166 T 29-03-2018 IPR017283 Protein deglycase HchA Y880_RS02555 8404c08c281530fea8d15a07d08fb7c9 291 Hamap MF_01046 Protein deglycase HchA [hchA]. 3 291 68.015 T 29-03-2018 IPR017283 Protein deglycase HchA Y880_RS02555 8404c08c281530fea8d15a07d08fb7c9 291 Gene3D G3DSA:3.40.50.880 3 290 9.3E-56 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 17 311 1.4E-95 T 29-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 Pfam PF00849 RNA pseudouridylate synthase 91 241 2.9E-32 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 Pfam PF01479 S4 domain 18 63 5.3E-7 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 SUPERFAMILY SSF55120 75 314 1.01E-80 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 SUPERFAMILY SSF55174 17 104 8.41E-8 T 29-03-2018 Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 Gene3D G3DSA:3.30.2350.10 82 315 9.5E-70 T 29-03-2018 Y880_RS21050 062662fe265578eecb8a19550d55caa5 320 Gene3D G3DSA:3.10.290.10 2 75 4.8E-13 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS23220 dc5254afdb9655c3c8b6a74afc175a59 394 Gene3D G3DSA:3.30.930.10 20 315 8.8E-49 T 29-03-2018 Y880_RS23220 dc5254afdb9655c3c8b6a74afc175a59 394 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 15 324 6.8E-90 T 29-03-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Y880_RS23220 dc5254afdb9655c3c8b6a74afc175a59 394 Pfam PF13393 Histidyl-tRNA synthetase 12 321 5.2E-118 T 29-03-2018 Y880_RS23220 dc5254afdb9655c3c8b6a74afc175a59 394 SUPERFAMILY SSF55681 7 324 1.95E-60 T 29-03-2018 Y880_RS23220 dc5254afdb9655c3c8b6a74afc175a59 394 PIRSF PIRSF001549 7 388 5.4E-47 T 29-03-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Y880_RS23220 dc5254afdb9655c3c8b6a74afc175a59 394 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 373 34.762 T 29-03-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 SUPERFAMILY SSF52540 119 256 7.96E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 SUPERFAMILY SSF52540 2 92 7.96E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 SUPERFAMILY SSF52540 298 518 1.08E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 Gene3D G3DSA:3.40.50.300 1 280 1.8E-50 T 29-03-2018 Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 Pfam PF12848 ABC transporter 217 295 2.4E-29 T 29-03-2018 IPR032781 ABC-transporter extension domain Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 Gene3D G3DSA:3.40.50.300 281 559 3.9E-47 T 29-03-2018 Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 Pfam PF00005 ABC transporter 328 459 5.3E-21 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 Pfam PF00005 ABC transporter 18 178 2.7E-20 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 SMART SM00382 26 223 1.3E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 SMART SM00382 337 504 2.1E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24865 d9ef4718dfcc5511ce236663368668f1 638 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS07210 38dc09edee3601b6fd4cdff8a45d8cfa 300 SUPERFAMILY SSF51569 1 289 8.61E-73 T 29-03-2018 Y880_RS07210 38dc09edee3601b6fd4cdff8a45d8cfa 300 Gene3D G3DSA:3.20.20.70 2 299 7.0E-112 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS07210 38dc09edee3601b6fd4cdff8a45d8cfa 300 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 233 242 - T 29-03-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111 Y880_RS07210 38dc09edee3601b6fd4cdff8a45d8cfa 300 Pfam PF00682 HMGL-like 6 278 3.7E-53 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y880_RS09420 5ba1742bb4ae7eeaf6564fee1b002612 439 SUPERFAMILY SSF50952 126 437 3.79E-33 T 29-03-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Y880_RS09420 5ba1742bb4ae7eeaf6564fee1b002612 439 SUPERFAMILY SSF50952 65 97 3.79E-33 T 29-03-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Y880_RS09420 5ba1742bb4ae7eeaf6564fee1b002612 439 Gene3D G3DSA:2.120.10.30 56 321 1.4E-36 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS09420 5ba1742bb4ae7eeaf6564fee1b002612 439 Gene3D G3DSA:2.120.10.30 322 439 1.1E-16 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS09420 5ba1742bb4ae7eeaf6564fee1b002612 439 Pfam PF07995 Glucose / Sorbosone dehydrogenase 166 360 4.1E-14 T 29-03-2018 IPR012938 Glucose/Sorbosone dehydrogenase Y880_RS12075 b31b0365d98c5cd48a5616264d14906f 160 SUPERFAMILY SSF55781 19 153 4.17E-37 T 29-03-2018 IPR029016 GAF domain-like Y880_RS12075 b31b0365d98c5cd48a5616264d14906f 160 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 97 114 - T 29-03-2018 IPR000614 Free Met sulfoxide reductase conserved site Y880_RS12075 b31b0365d98c5cd48a5616264d14906f 160 Gene3D G3DSA:3.30.450.40 7 154 4.7E-21 T 29-03-2018 IPR029016 GAF domain-like Y880_RS12075 b31b0365d98c5cd48a5616264d14906f 160 Pfam PF13185 GAF domain 42 151 2.8E-9 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Gene3D G3DSA:1.10.10.10 7 132 1.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 SUPERFAMILY SSF46785 10 206 2.69E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 9.6E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 9.6E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 9.6E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 SUPERFAMILY SSF53335 157 313 1.67E-36 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Pfam PF12840 Helix-turn-helix domain 19 75 1.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Gene3D G3DSA:3.40.50.150 133 309 2.9E-34 T 29-03-2018 Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Pfam PF13489 Methyltransferase domain 154 294 1.1E-17 T 29-03-2018 Y880_RS29435 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 SMART SM00418 18 95 6.7E-12 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS02505 04e1c6027e2f28acc53f4ec44ebcaefb 250 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 12 246 56.327 T 29-03-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 Y880_RS02505 04e1c6027e2f28acc53f4ec44ebcaefb 250 Gene3D G3DSA:3.40.50.1220 55 247 5.5E-58 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS02505 04e1c6027e2f28acc53f4ec44ebcaefb 250 Pfam PF02146 Sir2 family 19 199 1.3E-50 T 29-03-2018 IPR003000 Sirtuin family GO:0070403 Y880_RS02505 04e1c6027e2f28acc53f4ec44ebcaefb 250 SUPERFAMILY SSF52467 3 247 6.93E-83 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS02505 04e1c6027e2f28acc53f4ec44ebcaefb 250 Gene3D G3DSA:3.40.50.1220 1 54 4.9E-9 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS17900 225b9d440f4f5dbb46f376332a8c602c 653 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 5 490 3.9E-181 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Y880_RS17900 225b9d440f4f5dbb46f376332a8c602c 653 ProSitePatterns PS01303 BCCT family of transporters signature. 306 315 - T 29-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS17900 225b9d440f4f5dbb46f376332a8c602c 653 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 43 488 9.1E-156 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 Gene3D G3DSA:3.40.50.1820 39 310 1.3E-52 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 SUPERFAMILY SSF53474 37 304 2.5E-63 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 PRINTS PR00412 Epoxide hydrolase signature 88 103 2.9E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 PRINTS PR00412 Epoxide hydrolase signature 147 160 2.9E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 PRINTS PR00412 Epoxide hydrolase signature 281 303 2.9E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 147 160 5.5E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 103 5.5E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 133 146 5.5E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 250 264 5.5E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS12735 0c802be431cdcb1c2b94b7b578fddb32 315 Pfam PF12697 Alpha/beta hydrolase family 65 298 8.1E-26 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS10165 cf824ca01cc5e5cc6d6b1754b1d7d7cc 180 Pfam PF16304 Domain of unknown function (DUF4946) 26 179 6.6E-65 T 29-03-2018 IPR032543 Protein of unknown function DUF4946 Y880_RS10165 cf824ca01cc5e5cc6d6b1754b1d7d7cc 180 Gene3D G3DSA:3.40.1000.10 21 180 7.1E-4 T 29-03-2018 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Gene3D G3DSA:3.40.50.2300 503 647 1.6E-43 T 29-03-2018 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 35 101 2.4E-9 T 29-03-2018 IPR019247 Histidine kinase BarA, N-terminal Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SMART SM00388 265 330 1.3E-23 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SMART SM00387 378 494 7.5E-40 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Pfam PF00512 His Kinase A (phospho-acceptor) domain 265 330 1.5E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SUPERFAMILY SSF55874 319 494 6.42E-47 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Gene3D G3DSA:3.30.450.20 67 268 4.2E-5 T 29-03-2018 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Gene3D G3DSA:3.30.565.10 334 502 3.4E-47 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Gene3D G3DSA:1.10.287.130 269 326 1.8E-21 T 29-03-2018 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Pfam PF00072 Response regulator receiver domain 517 628 7.6E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 378 492 6.4E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 472 1.7E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 433 1.7E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 491 1.7E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 447 1.7E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SMART SM00448 515 628 3.2E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SUPERFAMILY SSF158472 192 239 3.14E-6 T 29-03-2018 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SUPERFAMILY SSF47384 251 330 4.32E-22 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SUPERFAMILY SSF52172 516 633 2.42E-39 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS05095 a9159d793beb4b71b7e237e4ade4f28f 651 SMART SM00304 191 243 1.2E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS18865 b591c407d99e4b55f1680d9d133c9e07 486 Gene3D G3DSA:3.40.309.10 258 458 2.1E-75 T 29-03-2018 Y880_RS18865 b591c407d99e4b55f1680d9d133c9e07 486 Pfam PF00171 Aldehyde dehydrogenase family 13 472 2.7E-174 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS18865 b591c407d99e4b55f1680d9d133c9e07 486 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 2 485 2.5E-223 T 29-03-2018 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 Y880_RS18865 b591c407d99e4b55f1680d9d133c9e07 486 SUPERFAMILY SSF53720 2 478 1.14E-170 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS18865 b591c407d99e4b55f1680d9d133c9e07 486 Gene3D G3DSA:3.40.605.10 1 257 3.6E-98 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS18865 b591c407d99e4b55f1680d9d133c9e07 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 269 280 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS18865 b591c407d99e4b55f1680d9d133c9e07 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 241 248 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 Pfam PF01494 FAD binding domain 299 362 1.3E-9 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 Pfam PF01494 FAD binding domain 6 176 2.5E-13 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 317 3.5E-21 T 29-03-2018 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.5E-21 T 29-03-2018 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 3.5E-21 T 29-03-2018 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 317 333 3.5E-21 T 29-03-2018 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 SUPERFAMILY SSF51905 289 366 9.16E-66 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 SUPERFAMILY SSF51905 5 178 9.16E-66 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 Gene3D G3DSA:3.50.50.60 5 370 8.5E-47 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19345 21a4b56dd0acec433bfb93b2bd34feb0 402 SUPERFAMILY SSF54373 185 293 2.43E-31 T 29-03-2018 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 Gene3D G3DSA:3.30.860.10 1 91 1.7E-37 T 29-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.717 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 SUPERFAMILY SSF54570 3 84 1.11E-34 T 29-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 29-03-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 8.3E-44 T 29-03-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 2.2E-22 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 2.2E-22 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 2.2E-22 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 Pfam PF00203 Ribosomal protein S19 3 83 6.0E-35 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19555 2469a8e8ac64f8ae89c6400722106914 91 PIRSF PIRSF002144 1 91 4.7E-31 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS27745 ab1f45f7311aaa0e9e5ce8bee83c7e23 432 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 26 412 1.1E-139 T 29-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 Y880_RS27745 ab1f45f7311aaa0e9e5ce8bee83c7e23 432 Pfam PF00083 Sugar (and other) transporter 21 217 3.1E-24 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS27745 ab1f45f7311aaa0e9e5ce8bee83c7e23 432 SUPERFAMILY SSF103473 12 424 2.62E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS27745 ab1f45f7311aaa0e9e5ce8bee83c7e23 432 Gene3D G3DSA:1.20.1250.20 225 429 2.5E-23 T 29-03-2018 Y880_RS27745 ab1f45f7311aaa0e9e5ce8bee83c7e23 432 ProSitePatterns PS00217 Sugar transport proteins signature 2. 129 154 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS27745 ab1f45f7311aaa0e9e5ce8bee83c7e23 432 Gene3D G3DSA:1.20.1250.20 14 224 1.6E-24 T 29-03-2018 Y880_RS27745 ab1f45f7311aaa0e9e5ce8bee83c7e23 432 Pfam PF07690 Major Facilitator Superfamily 265 420 4.2E-12 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS12355 fb689b41eeb526df4c31e549b76f07bb 297 Gene3D G3DSA:3.40.190.10 91 175 5.9E-17 T 29-03-2018 Y880_RS12355 fb689b41eeb526df4c31e549b76f07bb 297 SUPERFAMILY SSF46785 4 85 4.14E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12355 fb689b41eeb526df4c31e549b76f07bb 297 Gene3D G3DSA:3.40.190.10 176 264 7.8E-29 T 29-03-2018 Y880_RS12355 fb689b41eeb526df4c31e549b76f07bb 297 SUPERFAMILY SSF53850 89 294 3.41E-47 T 29-03-2018 Y880_RS12355 fb689b41eeb526df4c31e549b76f07bb 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.0E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12355 fb689b41eeb526df4c31e549b76f07bb 297 Pfam PF03466 LysR substrate binding domain 88 292 1.2E-43 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12355 fb689b41eeb526df4c31e549b76f07bb 297 Gene3D G3DSA:1.10.10.10 3 83 1.8E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26030 f22edfa955837c341a96a8b348cba367 379 SUPERFAMILY SSF103365 8 372 9.42E-104 T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS26030 f22edfa955837c341a96a8b348cba367 379 TIGRFAM TIGR03073 release_rtcB: release factor H-coupled RctB family protein 12 367 4.5E-189 T 29-03-2018 IPR017510 Release factor H-coupled RctB family protein Y880_RS26030 f22edfa955837c341a96a8b348cba367 379 Pfam PF01139 tRNA-splicing ligase RtcB 125 372 6.1E-57 T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS26030 f22edfa955837c341a96a8b348cba367 379 Pfam PF01139 tRNA-splicing ligase RtcB 29 98 1.0E-8 T 29-03-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y880_RS21310 4f8369d731bca7f97e20e737803249c6 228 Gene3D G3DSA:3.40.50.300 1 224 3.1E-61 T 29-03-2018 Y880_RS21310 4f8369d731bca7f97e20e737803249c6 228 Pfam PF00005 ABC transporter 21 169 2.0E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS21310 4f8369d731bca7f97e20e737803249c6 228 SMART SM00382 30 218 7.5E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21310 4f8369d731bca7f97e20e737803249c6 228 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS21310 4f8369d731bca7f97e20e737803249c6 228 SUPERFAMILY SSF52540 1 221 3.16E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01225 3001649871a795df3aaad7cd5484e3f5 370 SUPERFAMILY SSF53187 145 363 1.42E-42 T 29-03-2018 Y880_RS01225 3001649871a795df3aaad7cd5484e3f5 370 SUPERFAMILY SSF53187 18 109 1.42E-42 T 29-03-2018 Y880_RS01225 3001649871a795df3aaad7cd5484e3f5 370 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 29 357 1.2E-24 T 29-03-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 Y880_RS01225 3001649871a795df3aaad7cd5484e3f5 370 Gene3D G3DSA:2.40.50.100 302 357 0.041 T 29-03-2018 Y880_RS01225 3001649871a795df3aaad7cd5484e3f5 370 Gene3D G3DSA:3.40.630.10 24 301 9.1E-23 T 29-03-2018 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 ProSitePatterns PS00622 LuxR-type HTH domain signature. 191 218 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 SUPERFAMILY SSF75516 9 160 2.62E-36 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 Pfam PF03472 Autoinducer binding domain 18 158 8.1E-37 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 SMART SM00421 174 231 7.9E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 SUPERFAMILY SSF46894 170 237 1.36E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 231 2.5E-21 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 Gene3D G3DSA:3.30.450.80 1 173 5.3E-39 T 29-03-2018 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 Gene3D G3DSA:1.10.10.10 176 237 2.5E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 207 1.9E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 191 1.9E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04120 4272f1d764c71e64d9dda859db981b59 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 219 1.9E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12670 2aadd292088d7419dd82f3dcf220d7fc 485 Pfam PF00860 Permease family 2 380 7.8E-90 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS12670 2aadd292088d7419dd82f3dcf220d7fc 485 TIGRFAM TIGR03173 pbuX: xanthine permease 3 413 1.3E-152 T 29-03-2018 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 Y880_RS12670 2aadd292088d7419dd82f3dcf220d7fc 485 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 2 410 3.2E-100 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS12670 2aadd292088d7419dd82f3dcf220d7fc 485 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 328 348 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 Gene3D G3DSA:1.10.10.10 1 76 2.6E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 SMART SM00345 15 74 4.9E-25 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 7.5E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 7.5E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 SMART SM00895 99 230 2.6E-21 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 SUPERFAMILY SSF46785 6 76 1.04E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 SUPERFAMILY SSF48008 96 237 2.62E-26 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 Gene3D G3DSA:1.20.120.530 80 248 3.3E-29 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 4.7E-22 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS22345 35bcc95d09e1428bcd5b6e800f10d226 257 Pfam PF07729 FCD domain 99 229 6.5E-27 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 SMART SM00986 56 216 1.2E-38 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 11 227 41.65 T 29-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 64 73 - T 29-03-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 SUPERFAMILY SSF52141 9 228 1.09E-95 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 Pfam PF03167 Uracil DNA glycosylase superfamily 60 215 6.2E-25 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 12 220 4.6E-84 T 29-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 Gene3D G3DSA:3.40.470.10 1 229 1.6E-107 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y880_RS00360 d0174c97871f316c995d38b21e97059c 231 SMART SM00987 56 216 1.2E-38 T 29-03-2018 Y880_RS17565 567c0a2db6124b067cca70e9c9d99fa8 272 Pfam PF00639 PPIC-type PPIASE domain 122 214 7.6E-21 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 Y880_RS17565 567c0a2db6124b067cca70e9c9d99fa8 272 SUPERFAMILY SSF54534 109 215 5.3E-22 T 29-03-2018 Y880_RS17565 567c0a2db6124b067cca70e9c9d99fa8 272 SUPERFAMILY SSF109998 19 142 1.65E-5 T 29-03-2018 IPR027304 Trigger factor/SurA domain Y880_RS17565 567c0a2db6124b067cca70e9c9d99fa8 272 Gene3D G3DSA:3.10.50.40 111 240 2.5E-24 T 29-03-2018 Y880_RS23675 404d7b67d04e6ea03b9db7227f155a2e 324 Pfam PF01925 Sulfite exporter TauE/SafE 86 317 2.3E-36 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 SUPERFAMILY SSF52540 293 446 7.67E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 SUPERFAMILY SSF52540 196 266 7.67E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 Pfam PF00772 DnaB-like helicase N terminal domain 20 121 1.6E-37 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 SUPERFAMILY SSF48024 18 129 1.31E-40 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 Gene3D G3DSA:3.40.50.300 179 462 5.3E-70 T 29-03-2018 Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 20 455 5.1E-177 T 29-03-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 Pfam PF03796 DnaB-like helicase C terminal domain 197 453 1.8E-113 T 29-03-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Y880_RS23170 6a3a1fe11e64a7183fdcff270132770f 464 Gene3D G3DSA:1.10.860.10 10 162 8.0E-50 T 29-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 5.5E-69 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 5.5E-69 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 5.5E-69 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 5.5E-69 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 5.5E-69 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 5.5E-69 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 10 211 6.2E-92 T 29-03-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 Pfam PF00813 FliP family 14 211 2.0E-68 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS05530 606446d6f0c9544df6251f26071fe830 217 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 75 373 6.9E-119 T 29-03-2018 IPR011970 Lytic murein transglycosylase Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 Gene3D G3DSA:1.10.101.10 388 448 3.4E-13 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 SUPERFAMILY SSF53955 68 375 7.87E-105 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 Gene3D G3DSA:1.10.530.10 250 376 2.9E-36 T 29-03-2018 Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 SUPERFAMILY SSF47090 377 446 3.4E-17 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 Pfam PF13406 Transglycosylase SLT domain 75 369 1.9E-111 T 29-03-2018 IPR031304 Transglycosylase SLT domain 2 Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 Pfam PF01471 Putative peptidoglycan binding domain 391 445 3.1E-12 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS18210 6ce5bd8e4bc7614e6ded10c384cd201f 448 Gene3D G3DSA:1.10.8.350 140 244 9.8E-32 T 29-03-2018 Y880_RS16075 ef7f2ec25cc70415bae7dae92885fdd3 328 Pfam PF00561 alpha/beta hydrolase fold 49 299 4.3E-18 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS16075 ef7f2ec25cc70415bae7dae92885fdd3 328 Gene3D G3DSA:3.40.50.1820 26 321 8.5E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS16075 ef7f2ec25cc70415bae7dae92885fdd3 328 SUPERFAMILY SSF53474 26 317 9.21E-60 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS18585 0d28db6e2212f46c192e4d01d5b493e3 309 SUPERFAMILY SSF51735 5 306 4.71E-90 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18585 0d28db6e2212f46c192e4d01d5b493e3 309 Gene3D G3DSA:3.40.50.720 4 174 7.5E-41 T 29-03-2018 Y880_RS18585 0d28db6e2212f46c192e4d01d5b493e3 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 243 4.7E-66 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS18585 0d28db6e2212f46c192e4d01d5b493e3 309 Gene3D G3DSA:3.90.25.10 175 308 8.8E-33 T 29-03-2018 Y880_RS24320 46575be49be3b252d5714d477aa7887d 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.7E-41 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y880_RS24320 46575be49be3b252d5714d477aa7887d 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.539 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y880_RS24320 46575be49be3b252d5714d477aa7887d 90 PIRSF PIRSF029827 1 90 1.6E-40 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y880_RS24320 46575be49be3b252d5714d477aa7887d 90 Gene3D G3DSA:1.10.3880.10 2 89 3.6E-43 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y880_RS24320 46575be49be3b252d5714d477aa7887d 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 74 2.0E-39 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y880_RS24320 46575be49be3b252d5714d477aa7887d 90 SUPERFAMILY SSF111148 1 89 2.62E-41 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y880_RS24685 876632905664610a40bbabedd06f0616 332 Gene3D G3DSA:3.40.190.10 136 292 1.3E-31 T 29-03-2018 Y880_RS24685 876632905664610a40bbabedd06f0616 332 Gene3D G3DSA:3.40.190.10 22 135 1.3E-8 T 29-03-2018 Y880_RS24685 876632905664610a40bbabedd06f0616 332 PIRSF PIRSF002825 1 332 1.1E-106 T 29-03-2018 IPR026045 Ferric binding protein Y880_RS24685 876632905664610a40bbabedd06f0616 332 SUPERFAMILY SSF53850 24 328 4.66E-79 T 29-03-2018 Y880_RS24685 876632905664610a40bbabedd06f0616 332 Pfam PF13343 Bacterial extracellular solute-binding protein 71 297 4.0E-21 T 29-03-2018 Y880_RS01470 f0a93eb3391d9f746581e842d79244f6 276 SUPERFAMILY SSF101386 147 245 1.6E-26 T 29-03-2018 Y880_RS01470 f0a93eb3391d9f746581e842d79244f6 276 TIGRFAM TIGR00444 mazG: MazG family protein 10 267 3.9E-97 T 29-03-2018 IPR011551 NTP pyrophosphohydrolase MazG Y880_RS01470 f0a93eb3391d9f746581e842d79244f6 276 Gene3D G3DSA:1.10.287.1080 3 130 6.5E-36 T 29-03-2018 Y880_RS01470 f0a93eb3391d9f746581e842d79244f6 276 Gene3D G3DSA:1.10.287.1080 149 273 2.3E-30 T 29-03-2018 Y880_RS01470 f0a93eb3391d9f746581e842d79244f6 276 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 100 4.2E-26 T 29-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Y880_RS01470 f0a93eb3391d9f746581e842d79244f6 276 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 180 236 4.7E-10 T 29-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Y880_RS01470 f0a93eb3391d9f746581e842d79244f6 276 SUPERFAMILY SSF101386 2 104 1.96E-23 T 29-03-2018 Y880_RS23605 34791fc7b1fd4444b5594dec1aea2846 307 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 222 - T 29-03-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 Y880_RS23605 34791fc7b1fd4444b5594dec1aea2846 307 SUPERFAMILY SSF56752 1 303 2.88E-104 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Y880_RS23605 34791fc7b1fd4444b5594dec1aea2846 307 Gene3D G3DSA:3.30.470.10 1 142 7.8E-41 T 29-03-2018 Y880_RS23605 34791fc7b1fd4444b5594dec1aea2846 307 Pfam PF01063 Amino-transferase class IV 36 267 1.5E-54 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Y880_RS23605 34791fc7b1fd4444b5594dec1aea2846 307 Gene3D G3DSA:3.20.10.10 143 295 7.3E-51 T 29-03-2018 Y880_RS23605 34791fc7b1fd4444b5594dec1aea2846 307 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 306 1.7E-146 T 29-03-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 Y880_RS02320 173349794ea864d41b88b17395719335 128 SUPERFAMILY SSF160214 52 127 8.5E-24 T 29-03-2018 IPR005186 FlaG protein Y880_RS02320 173349794ea864d41b88b17395719335 128 Pfam PF03646 FlaG protein 36 125 1.6E-24 T 29-03-2018 IPR005186 FlaG protein Y880_RS02320 173349794ea864d41b88b17395719335 128 Gene3D G3DSA:3.30.160.170 29 124 1.3E-24 T 29-03-2018 IPR005186 FlaG protein Y880_RS19845 0fc168584125beccf141aa270fe8de1d 333 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 11 309 1.8E-40 T 29-03-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Y880_RS19845 0fc168584125beccf141aa270fe8de1d 333 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 38 315 2.6E-20 T 29-03-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Y880_RS10535 74e238a0e4c3604ba80f98a0ce2cc804 741 PIRSF PIRSF009407 1 741 0.0 T 29-03-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y880_RS10535 74e238a0e4c3604ba80f98a0ce2cc804 741 Gene3D G3DSA:3.40.718.10 30 365 6.1E-37 T 29-03-2018 Y880_RS10535 74e238a0e4c3604ba80f98a0ce2cc804 741 Gene3D G3DSA:3.40.718.10 420 714 9.2E-38 T 29-03-2018 Y880_RS10535 74e238a0e4c3604ba80f98a0ce2cc804 741 SUPERFAMILY SSF53659 5 740 0.0 T 29-03-2018 Y880_RS10535 74e238a0e4c3604ba80f98a0ce2cc804 741 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 4 740 0.0 T 29-03-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y880_RS10535 74e238a0e4c3604ba80f98a0ce2cc804 741 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 29-03-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 Gene3D G3DSA:3.40.47.10 144 258 6.3E-24 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 Pfam PF02803 Thiolase, C-terminal domain 271 391 1.2E-45 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 PIRSF PIRSF000429 1 394 1.7E-125 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 SUPERFAMILY SSF53901 271 391 2.54E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 Gene3D G3DSA:3.40.47.10 259 390 1.1E-29 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 8.3E-133 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 SUPERFAMILY SSF53901 1 265 7.84E-71 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 Pfam PF00108 Thiolase, N-terminal domain 4 261 3.1E-67 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 Gene3D G3DSA:3.40.47.10 1 140 5.8E-27 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS15385 fd27d1e11e516a45047fa28a73e03c42 394 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 Gene3D G3DSA:2.60.120.280 13 181 4.0E-10 T 29-03-2018 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 Pfam PF02311 AraC-like ligand binding domain 19 151 1.1E-27 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 Gene3D G3DSA:1.10.10.60 182 233 5.7E-19 T 29-03-2018 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 SUPERFAMILY SSF46689 176 225 8.51E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 SMART SM00342 190 272 1.6E-32 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 Gene3D G3DSA:1.10.10.60 234 284 1.9E-13 T 29-03-2018 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 SUPERFAMILY SSF46689 226 274 3.54E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 SUPERFAMILY SSF51215 31 157 1.31E-16 T 29-03-2018 Y880_RS14390 c378169b5dcab6d5a4bf3466db8c37de 284 Pfam PF12833 Helix-turn-helix domain 196 273 3.1E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 154 178 3.2E-8 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 19 41 3.2E-8 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 139 151 3.2E-8 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 117 125 3.2E-8 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 SUPERFAMILY SSF51905 13 134 5.74E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 SUPERFAMILY SSF51905 239 305 5.74E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 1.6E-12 T 29-03-2018 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 20 39 1.6E-12 T 29-03-2018 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 116 134 1.6E-12 T 29-03-2018 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 Gene3D G3DSA:3.50.50.60 17 142 2.4E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 SUPERFAMILY SSF51905 129 230 2.07E-5 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 Gene3D G3DSA:3.50.50.60 143 237 3.4E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19110 bb7e6a465fab28f04bb5e25e3a2cbe2c 310 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 18 286 2.7E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS00170 1ad0b66bedab07765eb060528a96a1de 328 Pfam PF03466 LysR substrate binding domain 198 318 4.8E-7 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS00170 1ad0b66bedab07765eb060528a96a1de 328 Gene3D G3DSA:1.10.10.10 31 112 1.4E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00170 1ad0b66bedab07765eb060528a96a1de 328 SUPERFAMILY SSF53850 116 322 2.17E-10 T 29-03-2018 Y880_RS00170 1ad0b66bedab07765eb060528a96a1de 328 SUPERFAMILY SSF46785 33 112 1.02E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00170 1ad0b66bedab07765eb060528a96a1de 328 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 36 92 1.5E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS00170 1ad0b66bedab07765eb060528a96a1de 328 Gene3D G3DSA:3.40.190.10 179 292 5.1E-4 T 29-03-2018 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 PRINTS PR00996 Glutamate methyltransferase family signature 130 146 7.8E-24 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 PRINTS PR00996 Glutamate methyltransferase family signature 58 70 7.8E-24 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 PRINTS PR00996 Glutamate methyltransferase family signature 97 117 7.8E-24 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 PRINTS PR00996 Glutamate methyltransferase family signature 218 241 7.8E-24 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 PRINTS PR00996 Glutamate methyltransferase family signature 199 213 7.8E-24 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 SMART SM00138 3 259 2.6E-38 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 Pfam PF01739 CheR methyltransferase, SAM binding domain 66 240 1.8E-36 T 29-03-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 Gene3D G3DSA:3.40.50.150 64 261 7.5E-40 T 29-03-2018 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 Gene3D G3DSA:1.10.155.10 2 62 1.1E-4 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 Gene3D G3DSA:1.25.40.10 283 421 6.3E-14 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 SUPERFAMILY SSF48452 329 416 1.29E-10 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS16685 0fb70b9bc4b65c4bb5f3c04b0d9e773b 422 SUPERFAMILY SSF53335 65 253 4.4E-43 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS10905 30b8d81d0b1675adccc1466fc1e0c2a3 367 Pfam PF07759 Protein of unknown function (DUF1615) 49 363 1.3E-147 T 29-03-2018 IPR011673 Protein of unknown function DUF1615 Y880_RS10905 30b8d81d0b1675adccc1466fc1e0c2a3 367 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 14 363 0.0 T 29-03-2018 IPR011673 Protein of unknown function DUF1615 Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 Gene3D G3DSA:3.40.190.10 95 226 4.7E-17 T 29-03-2018 Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 SUPERFAMILY SSF53850 101 291 6.52E-27 T 29-03-2018 Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 Gene3D G3DSA:1.10.10.10 7 94 7.3E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 72 3.9E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 Pfam PF03466 LysR substrate binding domain 101 288 1.4E-28 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 SUPERFAMILY SSF46785 6 119 1.74E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 1.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 1.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02585 15b5c1f35071bc52973b9fa003d52f36 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 1.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13105 fe2de989cdd5bd898b36b41130fb1180 642 Gene3D G3DSA:1.10.1240.20 402 470 2.5E-17 T 29-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 Y880_RS13105 fe2de989cdd5bd898b36b41130fb1180 642 Gene3D G3DSA:1.25.20.10 25 385 2.8E-46 T 29-03-2018 Y880_RS13105 fe2de989cdd5bd898b36b41130fb1180 642 Pfam PF14718 Soluble lytic murein transglycosylase L domain 404 470 6.1E-17 T 29-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 Y880_RS13105 fe2de989cdd5bd898b36b41130fb1180 642 SUPERFAMILY SSF48435 26 475 5.36E-129 T 29-03-2018 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 Y880_RS13105 fe2de989cdd5bd898b36b41130fb1180 642 Gene3D G3DSA:1.10.530.10 471 638 2.1E-37 T 29-03-2018 Y880_RS13105 fe2de989cdd5bd898b36b41130fb1180 642 Pfam PF01464 Transglycosylase SLT domain 485 596 6.8E-28 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 Y880_RS13105 fe2de989cdd5bd898b36b41130fb1180 642 SUPERFAMILY SSF53955 478 636 4.22E-45 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 Pfam PF00106 short chain dehydrogenase 5 188 6.0E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.5E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 1.5E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.5E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.5E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.5E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 3.2E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 3.2E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.2E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 SUPERFAMILY SSF51735 4 236 1.12E-58 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS17625 4abf5633ce03d7fb4b0afcb8289d63de 276 Gene3D G3DSA:3.40.50.720 2 269 5.5E-55 T 29-03-2018 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 Gene3D G3DSA:4.10.520.10 2 100 1.0E-32 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 Pfam PF00216 Bacterial DNA-binding protein 4 92 1.6E-31 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 97 1.3E-54 T 29-03-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 30.539 T 29-03-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 SUPERFAMILY SSF47729 4 93 2.94E-31 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 3.6E-17 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 3.6E-17 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 3.6E-17 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 68 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y880_RS11145 c17c62d0467f3ba379d4298e2891e80d 100 SMART SM00411 4 93 2.0E-41 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS21095 52f832b1e8844eaff406546891c54558 274 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 2.0E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21095 52f832b1e8844eaff406546891c54558 274 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 3.3E-4 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS17120 0b5f6fa7468802a609f2c85ecbe8a6b4 209 Pfam PF00857 Isochorismatase family 9 174 1.0E-30 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS17120 0b5f6fa7468802a609f2c85ecbe8a6b4 209 Gene3D G3DSA:3.40.50.850 2 208 2.7E-42 T 29-03-2018 Y880_RS17120 0b5f6fa7468802a609f2c85ecbe8a6b4 209 SUPERFAMILY SSF52499 6 187 3.01E-45 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS19990 927a9e882bd95010e9b60d22837a786a 256 Gene3D G3DSA:3.30.450.40 81 256 1.2E-21 T 29-03-2018 IPR029016 GAF domain-like Y880_RS19990 927a9e882bd95010e9b60d22837a786a 256 Gene3D G3DSA:1.10.10.10 1 70 3.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19990 927a9e882bd95010e9b60d22837a786a 256 Pfam PF09339 IclR helix-turn-helix domain 12 60 9.1E-15 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS19990 927a9e882bd95010e9b60d22837a786a 256 SMART SM00346 10 99 2.5E-9 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS19990 927a9e882bd95010e9b60d22837a786a 256 SUPERFAMILY SSF55781 85 255 1.41E-19 T 29-03-2018 IPR029016 GAF domain-like Y880_RS19990 927a9e882bd95010e9b60d22837a786a 256 SUPERFAMILY SSF46785 10 70 3.61E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10715 10140b77b9d2c9248c2e272bb6bd33b5 104 Pfam PF03413 Peptidase propeptide and YPEB domain 43 101 1.6E-10 T 29-03-2018 IPR025711 PepSY domain Y880_RS10715 10140b77b9d2c9248c2e272bb6bd33b5 104 Gene3D G3DSA:3.10.450.40 43 101 3.2E-14 T 29-03-2018 Y880_RS14160 d3b1d22a9149f3128d4696958f02a425 187 SUPERFAMILY SSF50891 25 185 7.31E-57 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS14160 d3b1d22a9149f3128d4696958f02a425 187 Gene3D G3DSA:2.40.100.10 17 187 8.8E-51 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS14160 d3b1d22a9149f3128d4696958f02a425 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 157 3.5E-8 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS14160 d3b1d22a9149f3128d4696958f02a425 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 68 80 3.5E-8 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS14160 d3b1d22a9149f3128d4696958f02a425 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 3.5E-8 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS14160 d3b1d22a9149f3128d4696958f02a425 187 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 63 80 - T 29-03-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Y880_RS14160 d3b1d22a9149f3128d4696958f02a425 187 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 185 1.3E-47 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS07055 839f4965b9a979db65d8ad3c88512eee 216 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 126 213 5.0E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07055 839f4965b9a979db65d8ad3c88512eee 216 Pfam PF07730 Histidine kinase 22 85 5.6E-9 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Y880_RS07055 839f4965b9a979db65d8ad3c88512eee 216 SUPERFAMILY SSF55874 92 212 9.69E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07055 839f4965b9a979db65d8ad3c88512eee 216 SMART SM00387 123 214 5.4E-6 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS07055 839f4965b9a979db65d8ad3c88512eee 216 Gene3D G3DSA:3.30.565.10 17 213 7.1E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS26540 d860cbf01aadc977b6dc6d33f26e6936 262 SUPERFAMILY SSF52540 1 253 1.32E-66 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26540 d860cbf01aadc977b6dc6d33f26e6936 262 Pfam PF13614 AAA domain 3 178 3.6E-64 T 29-03-2018 IPR025669 AAA domain Y880_RS26540 d860cbf01aadc977b6dc6d33f26e6936 262 PIRSF PIRSF009320 2 85 4.3E-14 T 29-03-2018 Y880_RS26540 d860cbf01aadc977b6dc6d33f26e6936 262 PIRSF PIRSF009320 87 260 1.2E-7 T 29-03-2018 Y880_RS26540 d860cbf01aadc977b6dc6d33f26e6936 262 Gene3D G3DSA:3.40.50.300 1 261 4.2E-60 T 29-03-2018 Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 Gene3D G3DSA:2.30.40.10 1 73 9.0E-18 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 SUPERFAMILY SSF51338 361 399 1.66E-28 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 SUPERFAMILY SSF51338 1 60 1.66E-28 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 Pfam PF01979 Amidohydrolase family 58 376 2.9E-20 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 Gene3D G3DSA:3.20.20.140 74 359 5.9E-57 T 29-03-2018 Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 SUPERFAMILY SSF51556 60 360 6.56E-86 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 TIGRFAM TIGR01224 hutI: imidazolonepropionase 22 394 3.6E-147 T 29-03-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24020 bee39f540695e71b17d0ea0e6d4ae934 402 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 399 42.731 T 29-03-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS19505 be05b762ee7fa34563a966f2d88fc537 130 Gene3D G3DSA:3.30.1370.30 1 66 1.0E-25 T 29-03-2018 Y880_RS19505 be05b762ee7fa34563a966f2d88fc537 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19505 be05b762ee7fa34563a966f2d88fc537 130 SUPERFAMILY SSF56047 2 130 5.49E-47 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19505 be05b762ee7fa34563a966f2d88fc537 130 Pfam PF00410 Ribosomal protein S8 5 130 5.7E-50 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19505 be05b762ee7fa34563a966f2d88fc537 130 Gene3D G3DSA:3.30.1490.10 74 129 9.1E-20 T 29-03-2018 Y880_RS19505 be05b762ee7fa34563a966f2d88fc537 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.877 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 Gene3D G3DSA:1.50.10.10 50 545 1.1E-149 T 29-03-2018 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 Pfam PF01204 Trehalase 66 541 4.4E-170 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 Hamap MF_01060 Periplasmic trehalase [treA]. 2 543 85.277 T 29-03-2018 IPR023720 Trehalase, periplasmic GO:0004555|GO:0005993|GO:0042597|GO:0071474 KEGG: 00500+3.2.1.28 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 ProSitePatterns PS00927 Trehalase signature 1. 159 172 - T 29-03-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 ProSitePatterns PS00928 Trehalase signature 2. 455 464 - T 29-03-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 PRINTS PR00744 Glycosyl hydrolase family 37 signature 310 327 6.3E-41 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 PRINTS PR00744 Glycosyl hydrolase family 37 signature 201 219 6.3E-41 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 PRINTS PR00744 Glycosyl hydrolase family 37 signature 448 464 6.3E-41 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 PRINTS PR00744 Glycosyl hydrolase family 37 signature 525 538 6.3E-41 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 PRINTS PR00744 Glycosyl hydrolase family 37 signature 276 293 6.3E-41 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 PRINTS PR00744 Glycosyl hydrolase family 37 signature 342 359 6.3E-41 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y880_RS09430 d2e085dc64bdb2baed053f3e5b42e83c 547 SUPERFAMILY SSF48208 51 541 1.43E-158 T 29-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 Gene3D G3DSA:2.40.170.20 273 891 1.4E-69 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 Pfam PF00593 TonB dependent receptor 378 889 6.1E-50 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 Pfam PF07715 TonB-dependent Receptor Plug Domain 150 257 4.3E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 SMART SM00965 75 126 3.3E-5 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 128 891 2.8E-201 T 29-03-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 134 891 2.8E-249 T 29-03-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 Gene3D G3DSA:2.170.130.10 147 272 3.3E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 SUPERFAMILY SSF56935 578 737 2.52E-89 T 29-03-2018 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 SUPERFAMILY SSF56935 776 891 2.52E-89 T 29-03-2018 Y880_RS15150 143b3af064c4a9801d6842fde778aec6 891 SUPERFAMILY SSF56935 138 548 2.52E-89 T 29-03-2018 Y880_RS08160 300e30c9058240183c33abdc7fb4b551 184 Pfam PF00574 Clp protease 2 168 7.6E-15 T 29-03-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Y880_RS08160 300e30c9058240183c33abdc7fb4b551 184 Gene3D G3DSA:3.90.226.10 1 171 2.3E-17 T 29-03-2018 Y880_RS08160 300e30c9058240183c33abdc7fb4b551 184 SUPERFAMILY SSF52096 3 170 1.33E-29 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 SMART SM00345 17 76 1.3E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 Gene3D G3DSA:1.10.10.10 2 78 1.4E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 Pfam PF00155 Aminotransferase class I and II 107 446 3.1E-39 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 Gene3D G3DSA:3.40.640.10 122 369 2.2E-47 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 Gene3D G3DSA:3.90.1150.10 370 457 5.0E-14 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 1.7E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 SUPERFAMILY SSF53383 105 457 3.16E-86 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS25025 4a299d792097a96440c558bf8b42f83c 458 SUPERFAMILY SSF46785 6 86 2.64E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17495 bbf8669c2745f82f80d1d125e1471aaa 160 SUPERFAMILY SSF54427 2 133 4.7E-30 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS17495 bbf8669c2745f82f80d1d125e1471aaa 160 Gene3D G3DSA:3.10.450.50 4 131 1.0E-27 T 29-03-2018 Y880_RS17495 bbf8669c2745f82f80d1d125e1471aaa 160 Pfam PF12680 SnoaL-like domain 9 110 5.2E-17 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS04395 6681bc2423d10d9ebc4a040936b732fd 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 217 233 4.9E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04395 6681bc2423d10d9ebc4a040936b732fd 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 217 4.9E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04395 6681bc2423d10d9ebc4a040936b732fd 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 233 245 4.9E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04395 6681bc2423d10d9ebc4a040936b732fd 268 Gene3D G3DSA:1.10.10.10 68 262 2.8E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04395 6681bc2423d10d9ebc4a040936b732fd 268 Pfam PF00196 Bacterial regulatory proteins, luxR family 202 255 3.7E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04395 6681bc2423d10d9ebc4a040936b732fd 268 SMART SM00421 200 257 2.5E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS04395 6681bc2423d10d9ebc4a040936b732fd 268 SUPERFAMILY SSF46894 191 259 9.52E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS17540 eea8eb6d2c72abdae83b6568829e8696 210 Pfam PF08348 YheO-like PAS domain 9 114 3.8E-27 T 29-03-2018 IPR013559 YheO-like Y880_RS17540 eea8eb6d2c72abdae83b6568829e8696 210 Pfam PF13309 HTH domain 142 203 1.9E-16 T 29-03-2018 Y880_RS17540 eea8eb6d2c72abdae83b6568829e8696 210 Gene3D G3DSA:1.10.10.60 160 210 7.0E-5 T 29-03-2018 Y880_RS17540 eea8eb6d2c72abdae83b6568829e8696 210 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 9 110 7.0E-54 T 29-03-2018 IPR013559 YheO-like Y880_RS18380 5dbcdb56343538271d0aef985b03f46d 527 Gene3D G3DSA:1.10.510.10 320 497 1.4E-7 T 29-03-2018 Y880_RS18380 5dbcdb56343538271d0aef985b03f46d 527 SUPERFAMILY SSF56112 283 490 9.49E-11 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 Gene3D G3DSA:1.10.10.10 3 54 3.2E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 SUPERFAMILY SSF46785 2 89 3.27E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 Gene3D G3DSA:3.30.70.920 56 148 2.2E-26 T 29-03-2018 Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 8.8E-23 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 SMART SM00344 3 112 5.6E-45 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 5.0E-19 T 29-03-2018 Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.9E-17 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.9E-17 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.9E-17 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS20850 5bc344d102957589101fea2c4f48eb04 157 SUPERFAMILY SSF54909 63 152 1.61E-21 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 SUPERFAMILY SSF46785 1 110 6.98E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.0E-23 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 Gene3D G3DSA:1.10.10.10 1 83 4.8E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 Gene3D G3DSA:3.40.190.10 177 261 1.3E-19 T 29-03-2018 Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.9E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.9E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.9E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 Pfam PF03466 LysR substrate binding domain 87 288 1.5E-45 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 SUPERFAMILY SSF53850 86 289 3.86E-44 T 29-03-2018 Y880_RS13635 84d599b7b8d2ef94e44a277360c99edd 297 Gene3D G3DSA:3.40.190.10 87 176 5.2E-23 T 29-03-2018 Y880_RS23150 35d2ea60c2eac2f873d1fde5e0692b89 832 SUPERFAMILY SSF56059 23 219 1.91E-23 T 29-03-2018 Y880_RS23150 35d2ea60c2eac2f873d1fde5e0692b89 832 SUPERFAMILY SSF56059 326 418 1.91E-23 T 29-03-2018 Y880_RS23150 35d2ea60c2eac2f873d1fde5e0692b89 832 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 511 819 1.6E-72 T 29-03-2018 IPR007296 Domain of unknown function DUF403 Y880_RS23150 35d2ea60c2eac2f873d1fde5e0692b89 832 Pfam PF14403 Circularly permuted ATP-grasp type 2 81 462 4.8E-155 T 29-03-2018 IPR025841 Circularly permuted ATP-grasp type 2 Y880_RS17265 5100afeb93346c21ace2586330c8ff7e 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.1E-24 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS17265 5100afeb93346c21ace2586330c8ff7e 107 SUPERFAMILY SSF89360 1 96 1.83E-31 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS17265 5100afeb93346c21ace2586330c8ff7e 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 29-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Y880_RS17265 5100afeb93346c21ace2586330c8ff7e 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 1.3E-35 T 29-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Y880_RS17265 5100afeb93346c21ace2586330c8ff7e 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 3.0E-53 T 29-03-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 Y880_RS17265 5100afeb93346c21ace2586330c8ff7e 107 Gene3D G3DSA:2.60.300.12 2 107 1.1E-36 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y880_RS21440 779fbc76af5ea0f9b1f006d9c87fb18d 191 Pfam PF12804 MobA-like NTP transferase domain 9 166 5.5E-36 T 29-03-2018 IPR025877 MobA-like NTP transferase Y880_RS21440 779fbc76af5ea0f9b1f006d9c87fb18d 191 Gene3D G3DSA:3.90.550.10 5 187 2.4E-30 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS21440 779fbc76af5ea0f9b1f006d9c87fb18d 191 SUPERFAMILY SSF53448 8 190 5.18E-28 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS28785 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 Gene3D G3DSA:2.40.128.110 24 191 4.3E-50 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS28785 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 SUPERFAMILY SSF101874 22 191 2.88E-56 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS28785 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 Hamap MF_00780 Protein YceI [yceI]. 2 191 45.339 T 29-03-2018 IPR023480 Uncharacterised protein family UPF0312/YceI Y880_RS28785 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 Pfam PF04264 YceI-like domain 26 186 1.9E-41 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS28785 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 SMART SM00867 25 189 1.3E-71 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y880_RS26905 688366089165f83cc3a52b75bed21c74 151 Pfam PF02566 OsmC-like protein 53 145 6.8E-20 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS26905 688366089165f83cc3a52b75bed21c74 151 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 12 147 4.0E-64 T 29-03-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 Y880_RS26905 688366089165f83cc3a52b75bed21c74 151 SUPERFAMILY SSF82784 10 149 6.02E-42 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS26905 688366089165f83cc3a52b75bed21c74 151 Gene3D G3DSA:3.30.300.20 10 150 5.3E-31 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS15885 578fface42d1c6eb19ca207c8ccf718e 339 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 1 327 63.692 T 29-03-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 Y880_RS15885 578fface42d1c6eb19ca207c8ccf718e 339 SUPERFAMILY SSF53448 8 255 1.39E-39 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS15885 578fface42d1c6eb19ca207c8ccf718e 339 Gene3D G3DSA:3.90.550.10 3 329 8.7E-34 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS15885 578fface42d1c6eb19ca207c8ccf718e 339 Pfam PF00535 Glycosyl transferase family 2 10 172 3.8E-32 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 SUPERFAMILY SSF52540 344 398 1.9E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 SUPERFAMILY SSF52540 154 292 1.9E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 SUPERFAMILY SSF52540 512 538 1.9E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 SUPERFAMILY SSF52540 520 682 1.98E-7 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 SUPERFAMILY SSF52540 714 739 1.98E-7 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 Gene3D G3DSA:3.40.50.300 188 561 3.6E-19 T 29-03-2018 Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 Pfam PF13307 Helicase C-terminal domain 596 756 1.3E-31 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 Pfam PF06733 DEAD_2 278 396 3.1E-11 T 29-03-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 Gene3D G3DSA:3.40.50.300 570 751 3.8E-6 T 29-03-2018 Y880_RS06475 36d45dec229d14203a29b8ed29908f34 758 SMART SM00491 609 744 2.6E-8 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 14 196 1.1E-50 T 29-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 62 76 9.5E-6 T 29-03-2018 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 37 53 9.5E-6 T 29-03-2018 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 128 140 9.5E-6 T 29-03-2018 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 Gene3D G3DSA:3.40.50.150 6 198 2.2E-39 T 29-03-2018 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 PIRSF PIRSF004553 17 198 5.5E-48 T 29-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 Pfam PF03602 Conserved hypothetical protein 95 18 195 4.1E-59 T 29-03-2018 Y880_RS28505 115225bfe9336b6e35b42c7da41127b9 198 SUPERFAMILY SSF53335 18 195 1.67E-49 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 SUPERFAMILY SSF56176 337 418 4.91E-18 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF03471 Transporter associated domain 341 414 9.8E-15 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF01595 Domain of unknown function DUF21 12 165 3.5E-37 T 29-03-2018 IPR002550 Domain of unknown function DUF21 Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF00571 CBS domain 216 261 3.7E-4 T 29-03-2018 IPR000644 CBS domain Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF00571 CBS domain 277 325 2.1E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 Gene3D G3DSA:3.10.580.10 186 333 1.2E-28 T 29-03-2018 Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 SUPERFAMILY SSF54631 192 328 1.17E-28 T 29-03-2018 Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 SMART SM00116 277 325 1.2 T 29-03-2018 IPR000644 CBS domain Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 SMART SM00116 213 262 7.2 T 29-03-2018 IPR000644 CBS domain Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 Gene3D G3DSA:3.30.465.10 334 416 7.2E-14 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS16900 94c2dc956ca4548b96411b5a45fbd1c6 430 SMART SM01091 340 418 3.4E-18 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS17555 9c4b4464e293f331490cf8719086d5b3 174 Gene3D G3DSA:3.90.420.10 9 170 1.2E-24 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS17555 9c4b4464e293f331490cf8719086d5b3 174 SUPERFAMILY SSF56524 21 167 8.24E-20 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS17555 9c4b4464e293f331490cf8719086d5b3 174 Pfam PF00174 Oxidoreductase molybdopterin binding domain 23 165 3.5E-13 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS21545 2bd77a9dc087ef1465d951c1eb571c0e 60 Pfam PF14255 Cysteine-rich CPXCG 7 56 7.5E-24 T 29-03-2018 IPR025990 Cysteine-rich CPXCG protein Y880_RS21545 2bd77a9dc087ef1465d951c1eb571c0e 60 PIRSF PIRSF037225 1 60 2.5E-26 T 29-03-2018 IPR017143 Uncharacterised conserved protein UCP037225 Y880_RS23280 46c633bf861e7f7d8e0094dc66c1697e 180 Gene3D G3DSA:3.30.420.10 1 180 5.2E-31 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS23280 46c633bf861e7f7d8e0094dc66c1697e 180 Pfam PF00929 Exonuclease 8 169 4.8E-34 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS23280 46c633bf861e7f7d8e0094dc66c1697e 180 SMART SM00479 6 179 1.1E-22 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS23280 46c633bf861e7f7d8e0094dc66c1697e 180 SUPERFAMILY SSF53098 2 179 2.74E-49 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS23280 46c633bf861e7f7d8e0094dc66c1697e 180 Hamap MF_00045 Oligoribonuclease [orn]. 2 180 44.191 T 29-03-2018 IPR022894 Oligoribonuclease GO:0000175 Y880_RS10265 7aa95eabaf09a55b7ee82063416a73e5 299 SUPERFAMILY SSF103481 189 286 2.48E-11 T 29-03-2018 Y880_RS10265 7aa95eabaf09a55b7ee82063416a73e5 299 Pfam PF00892 EamA-like transporter family 154 282 1.2E-17 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS10265 7aa95eabaf09a55b7ee82063416a73e5 299 Pfam PF00892 EamA-like transporter family 18 139 9.1E-9 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS10265 7aa95eabaf09a55b7ee82063416a73e5 299 SUPERFAMILY SSF103481 39 140 9.02E-12 T 29-03-2018 Y880_RS13885 566f4552ccfd0ecd0e9f5ffeb6e0a059 311 PIRSF PIRSF036979 16 311 1.1E-27 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS13885 566f4552ccfd0ecd0e9f5ffeb6e0a059 311 Gene3D G3DSA:3.40.800.10 1 311 2.4E-84 T 29-03-2018 Y880_RS13885 566f4552ccfd0ecd0e9f5ffeb6e0a059 311 TIGRFAM TIGR01227 hutG: formimidoylglutamase 10 311 9.3E-129 T 29-03-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 Y880_RS13885 566f4552ccfd0ecd0e9f5ffeb6e0a059 311 SUPERFAMILY SSF52768 9 310 5.76E-82 T 29-03-2018 Y880_RS13885 566f4552ccfd0ecd0e9f5ffeb6e0a059 311 Pfam PF00491 Arginase family 40 309 3.1E-61 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 Y880_RS13885 566f4552ccfd0ecd0e9f5ffeb6e0a059 311 Hamap MF_00737 Formimidoylglutamase [hutG]. 5 311 43.871 T 29-03-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 Y880_RS07225 888c3625c0936528bc1504de3305187e 535 SUPERFAMILY SSF52096 237 517 5.97E-91 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS07225 888c3625c0936528bc1504de3305187e 535 Pfam PF01039 Carboxyl transferase domain 48 525 1.2E-155 T 29-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 Y880_RS07225 888c3625c0936528bc1504de3305187e 535 SUPERFAMILY SSF52096 23 270 2.99E-74 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS07225 888c3625c0936528bc1504de3305187e 535 Gene3D G3DSA:3.90.226.10 274 530 1.3E-72 T 29-03-2018 Y880_RS07225 888c3625c0936528bc1504de3305187e 535 Gene3D G3DSA:3.90.226.10 9 273 5.6E-71 T 29-03-2018 Y880_RS10985 20840bd263c9a6bb01631b8936d4a733 204 Pfam PF01810 LysE type translocator 15 203 1.8E-31 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS10985 20840bd263c9a6bb01631b8936d4a733 204 PIRSF PIRSF006324 1 204 7.5E-54 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS22025 abf8d44917c579f55d0c2566eed9b0aa 764 SUPERFAMILY SSF56935 35 760 1.86E-122 T 29-03-2018 Y880_RS22025 abf8d44917c579f55d0c2566eed9b0aa 764 Pfam PF00593 TonB dependent receptor 273 761 1.0E-64 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS22025 abf8d44917c579f55d0c2566eed9b0aa 764 Gene3D G3DSA:2.170.130.10 22 163 7.0E-31 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS22025 abf8d44917c579f55d0c2566eed9b0aa 764 Gene3D G3DSA:2.40.170.20 164 763 4.3E-77 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS22025 abf8d44917c579f55d0c2566eed9b0aa 764 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 34 761 1.7E-161 T 29-03-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 Y880_RS22025 abf8d44917c579f55d0c2566eed9b0aa 764 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 33 760 2.2E-126 T 29-03-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 Y880_RS22025 abf8d44917c579f55d0c2566eed9b0aa 764 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 155 5.9E-28 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS04360 7ed8cebcfcf7e41723596c86378b2c76 58 Pfam PF04995 Heme exporter protein D (CcmD) 13 56 1.5E-17 T 29-03-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 Y880_RS04360 7ed8cebcfcf7e41723596c86378b2c76 58 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 56 8.7E-22 T 29-03-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 Y880_RS20795 cef1b7bf6ba06e00d9a6122e32c2584b 405 SUPERFAMILY SSF53092 15 169 7.32E-26 T 29-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal Y880_RS20795 cef1b7bf6ba06e00d9a6122e32c2584b 405 Gene3D G3DSA:3.40.350.10 31 161 7.2E-21 T 29-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Y880_RS20795 cef1b7bf6ba06e00d9a6122e32c2584b 405 Pfam PF00557 Metallopeptidase family M24 178 384 3.0E-50 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS20795 cef1b7bf6ba06e00d9a6122e32c2584b 405 Gene3D G3DSA:3.90.230.10 162 400 3.0E-64 T 29-03-2018 Y880_RS20795 cef1b7bf6ba06e00d9a6122e32c2584b 405 Pfam PF01321 Creatinase/Prolidase N-terminal domain 35 169 3.3E-23 T 29-03-2018 IPR000587 Creatinase, N-terminal GO:0016787 Y880_RS20795 cef1b7bf6ba06e00d9a6122e32c2584b 405 SUPERFAMILY SSF55920 136 393 3.14E-69 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS20795 cef1b7bf6ba06e00d9a6122e32c2584b 405 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 330 342 - T 29-03-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Y880_RS08230 1c906324b22d9eebebca43e3ac7ad353 268 SMART SM00062 32 253 5.5E-63 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS08230 1c906324b22d9eebebca43e3ac7ad353 268 SUPERFAMILY SSF53850 1 252 9.31E-69 T 29-03-2018 Y880_RS08230 1c906324b22d9eebebca43e3ac7ad353 268 Gene3D G3DSA:3.40.190.10 174 257 2.6E-8 T 29-03-2018 Y880_RS08230 1c906324b22d9eebebca43e3ac7ad353 268 SMART SM00079 32 252 0.0085 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Y880_RS08230 1c906324b22d9eebebca43e3ac7ad353 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 251 6.7E-60 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS08230 1c906324b22d9eebebca43e3ac7ad353 268 Gene3D G3DSA:3.40.190.10 21 173 1.1E-41 T 29-03-2018 Y880_RS08575 5278680366a40c25a809e2a698f14b4e 350 SUPERFAMILY SSF52518 16 231 8.57E-67 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS08575 5278680366a40c25a809e2a698f14b4e 350 Gene3D G3DSA:3.40.50.970 13 223 5.7E-66 T 29-03-2018 Y880_RS08575 5278680366a40c25a809e2a698f14b4e 350 Gene3D G3DSA:3.40.50.920 224 349 9.0E-31 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS08575 5278680366a40c25a809e2a698f14b4e 350 SUPERFAMILY SSF52922 218 348 2.88E-41 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS08575 5278680366a40c25a809e2a698f14b4e 350 SMART SM00861 17 192 9.1E-68 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS08575 5278680366a40c25a809e2a698f14b4e 350 Pfam PF02780 Transketolase, C-terminal domain 224 340 2.4E-35 T 29-03-2018 IPR033248 Transketolase, C-terminal domain Y880_RS08575 5278680366a40c25a809e2a698f14b4e 350 Pfam PF02779 Transketolase, pyrimidine binding domain 16 191 2.8E-44 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS18455 49bce977b060853db4ef9ba073a529f3 295 SUPERFAMILY SSF48576 5 287 1.15E-86 T 29-03-2018 IPR008949 Isoprenoid synthase domain Y880_RS18455 49bce977b060853db4ef9ba073a529f3 295 Gene3D G3DSA:1.10.600.10 1 295 2.8E-87 T 29-03-2018 IPR008949 Isoprenoid synthase domain Y880_RS18455 49bce977b060853db4ef9ba073a529f3 295 Pfam PF00348 Polyprenyl synthetase 29 258 2.4E-58 T 29-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 Y880_RS18455 49bce977b060853db4ef9ba073a529f3 295 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 80 96 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site Y880_RS18455 49bce977b060853db4ef9ba073a529f3 295 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 214 226 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site Y880_RS05930 8b1f490aa3ba253d5ba167e349708427 272 Pfam PF03618 Kinase/pyrophosphorylase 6 262 7.6E-77 T 29-03-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 Y880_RS05930 8b1f490aa3ba253d5ba167e349708427 272 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 271 77.752 T 29-03-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein Y880_RS05930 8b1f490aa3ba253d5ba167e349708427 272 Gene3D G3DSA:3.40.50.300 15 265 5.4E-4 T 29-03-2018 Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 Pfam PF05593 RHS Repeat 489 524 4.4E-8 T 29-03-2018 IPR031325 RHS repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 Pfam PF05593 RHS Repeat 531 566 1.2E-6 T 29-03-2018 IPR031325 RHS repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 Pfam PF05593 RHS Repeat 927 965 7.3E-5 T 29-03-2018 IPR031325 RHS repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 Pfam PF05593 RHS Repeat 595 630 3.1E-6 T 29-03-2018 IPR031325 RHS repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 Pfam PF05593 RHS Repeat 636 671 4.8E-6 T 29-03-2018 IPR031325 RHS repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 531 570 5.6E-8 T 29-03-2018 IPR006530 YD repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 594 634 2.1E-7 T 29-03-2018 IPR006530 YD repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 489 528 5.9E-7 T 29-03-2018 IPR006530 YD repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 636 669 4.3E-7 T 29-03-2018 IPR006530 YD repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 367 399 2.1E-4 T 29-03-2018 IPR006530 YD repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 381 415 8.7E-5 T 29-03-2018 IPR006530 YD repeat Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 PRINTS PR00394 RHS protein signature 1112 1132 3.0E-15 T 29-03-2018 IPR001826 RHS protein Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 PRINTS PR00394 RHS protein signature 1059 1079 3.0E-15 T 29-03-2018 IPR001826 RHS protein Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 PRINTS PR00394 RHS protein signature 1135 1154 3.0E-15 T 29-03-2018 IPR001826 RHS protein Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1105 1168 1.1E-23 T 29-03-2018 IPR022385 Rhs repeat-associated core GO:0097264 Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 Pfam PF03527 RHS protein 1065 1101 1.9E-14 T 29-03-2018 IPR001826 RHS protein Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 SUPERFAMILY SSF69322 473 609 7.32E-6 T 29-03-2018 Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 SUPERFAMILY SSF69322 649 730 7.32E-6 T 29-03-2018 Y880_RS10855 4be93adc89e009d7cb4824ff861d9a91 1317 Gene3D G3DSA:2.120.10.30 164 734 8.1E-6 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 SUPERFAMILY SSF55979 246 367 7.25E-38 T 29-03-2018 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 Gene3D G3DSA:3.10.150.10 249 367 2.7E-26 T 29-03-2018 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 367 7.3E-111 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 Gene3D G3DSA:3.10.150.10 125 248 5.3E-34 T 29-03-2018 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 8.3E-42 T 29-03-2018 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 PIRSF PIRSF000804 1 367 3.5E-125 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 Gene3D G3DSA:3.10.150.10 1 123 2.3E-29 T 29-03-2018 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 244 1.6E-39 T 29-03-2018 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 SUPERFAMILY SSF55979 126 245 3.14E-31 T 29-03-2018 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 SMART SM00480 17 363 1.3E-163 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 247 366 4.2E-41 T 29-03-2018 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y880_RS26595 11d65719c9b894c83788e1ecf656bf53 367 SUPERFAMILY SSF55979 1 120 3.14E-29 T 29-03-2018 Y880_RS04910 707247421cfff71a9bf61c9789dbcc66 183 Gene3D G3DSA:3.30.420.10 2 163 1.4E-27 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS04910 707247421cfff71a9bf61c9789dbcc66 183 SUPERFAMILY SSF53098 2 178 1.04E-30 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS04910 707247421cfff71a9bf61c9789dbcc66 183 SMART SM00479 3 183 7.0E-7 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS04910 707247421cfff71a9bf61c9789dbcc66 183 Pfam PF00929 Exonuclease 5 175 2.3E-18 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS04910 707247421cfff71a9bf61c9789dbcc66 183 Gene3D G3DSA:1.20.5.140 164 176 3.7E-4 T 29-03-2018 Y880_RS11360 b4b9537a946f50026a895bd25f6242ed 259 Gene3D G3DSA:3.10.310.10 1 120 2.4E-35 T 29-03-2018 Y880_RS11360 b4b9537a946f50026a895bd25f6242ed 259 SUPERFAMILY SSF54506 1 259 1.43E-86 T 29-03-2018 Y880_RS11360 b4b9537a946f50026a895bd25f6242ed 259 Gene3D G3DSA:3.10.310.10 121 247 1.2E-37 T 29-03-2018 Y880_RS11360 b4b9537a946f50026a895bd25f6242ed 259 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 257 5.9E-43 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS11360 b4b9537a946f50026a895bd25f6242ed 259 Pfam PF02567 Phenazine biosynthesis-like protein 8 255 6.3E-63 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS11360 b4b9537a946f50026a895bd25f6242ed 259 PIRSF PIRSF016184 1 259 3.0E-60 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS24680 c0463eb567c9dde88e6d81041e7f44a1 539 Gene3D G3DSA:1.10.3720.10 40 261 2.0E-32 T 29-03-2018 Y880_RS24680 c0463eb567c9dde88e6d81041e7f44a1 539 Gene3D G3DSA:1.10.3720.10 312 539 6.0E-23 T 29-03-2018 Y880_RS24680 c0463eb567c9dde88e6d81041e7f44a1 539 SUPERFAMILY SSF161098 8 252 5.45E-46 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24680 c0463eb567c9dde88e6d81041e7f44a1 539 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 253 8.2E-16 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24680 c0463eb567c9dde88e6d81041e7f44a1 539 SUPERFAMILY SSF161098 280 531 1.96E-34 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS15735 1b9335d0850d0d92c3d5c4a3e61a5cf8 128 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 127 8.5E-66 T 29-03-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y880_RS15735 1b9335d0850d0d92c3d5c4a3e61a5cf8 128 SUPERFAMILY SSF54593 1 126 2.01E-36 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15735 1b9335d0850d0d92c3d5c4a3e61a5cf8 128 Gene3D G3DSA:3.10.180.10 1 128 6.1E-37 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15735 1b9335d0850d0d92c3d5c4a3e61a5cf8 128 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 29-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y880_RS15735 1b9335d0850d0d92c3d5c4a3e61a5cf8 128 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 29-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y880_RS15735 1b9335d0850d0d92c3d5c4a3e61a5cf8 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 3.2E-23 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS29120 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Gene3D G3DSA:3.30.200.20 3 104 1.6E-17 T 29-03-2018 Y880_RS29120 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Pfam PF01636 Phosphotransferase enzyme family 32 260 2.9E-38 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS29120 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Gene3D G3DSA:3.90.1200.10 108 320 4.3E-22 T 29-03-2018 Y880_RS29120 52dbdaaac9a6f195dbb898f58bc9a1d4 324 SUPERFAMILY SSF56112 1 322 1.25E-86 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS29120 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Hamap MF_01497 Stress response kinase A [srkA]. 1 317 48.358 T 29-03-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 Y880_RS18700 8efcb718229354f2591b2337658d876c 520 Gene3D G3DSA:1.20.140.10 292 494 1.3E-62 T 29-03-2018 Y880_RS18700 8efcb718229354f2591b2337658d876c 520 PIRSF PIRSF000331 11 501 4.9E-192 T 29-03-2018 IPR004925 HpaB/PvcC/4-BUDH Y880_RS18700 8efcb718229354f2591b2337658d876c 520 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 15 281 6.6E-93 T 29-03-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal Y880_RS18700 8efcb718229354f2591b2337658d876c 520 TIGRFAM TIGR02310 HpaB-2: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 2 520 0.0 T 29-03-2018 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria GO:0010124|GO:0016712|GO:0050660 Y880_RS18700 8efcb718229354f2591b2337658d876c 520 SUPERFAMILY SSF47203 272 494 6.7E-45 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS18700 8efcb718229354f2591b2337658d876c 520 SUPERFAMILY SSF56645 13 282 3.97E-81 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS18700 8efcb718229354f2591b2337658d876c 520 PIRSF PIRSF500125 1 518 1.8E-283 T 29-03-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein Y880_RS18700 8efcb718229354f2591b2337658d876c 520 Gene3D G3DSA:1.10.3140.10 14 151 1.4E-49 T 29-03-2018 Y880_RS18700 8efcb718229354f2591b2337658d876c 520 Gene3D G3DSA:2.40.110.10 152 283 4.5E-13 T 29-03-2018 Y880_RS18700 8efcb718229354f2591b2337658d876c 520 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 288 482 2.6E-62 T 29-03-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal Y880_RS16480 46da3259fafe1e8565987ddc65624028 207 Pfam PF01810 LysE type translocator 14 203 2.2E-26 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS16480 46da3259fafe1e8565987ddc65624028 207 PIRSF PIRSF006324 1 205 7.3E-49 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 PIRSF PIRSF016578 149 391 1.3E-10 T 29-03-2018 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 PIRSF PIRSF016578 15 94 0.063 T 29-03-2018 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 Gene3D G3DSA:1.10.540.10 1 134 2.5E-38 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 SUPERFAMILY SSF47203 243 390 3.54E-42 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 227 6.2E-22 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 SUPERFAMILY SSF56645 7 238 6.54E-77 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 239 385 9.5E-28 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 132 1.1E-34 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 345 364 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 Gene3D G3DSA:2.40.110.10 135 226 1.9E-32 T 29-03-2018 Y880_RS28910 8030e68d0852747dddc47237a6bc3920 393 Gene3D G3DSA:1.20.140.10 227 391 9.2E-38 T 29-03-2018 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 Pfam PF03466 LysR substrate binding domain 91 289 6.1E-43 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 Gene3D G3DSA:3.40.190.10 90 179 3.8E-26 T 29-03-2018 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 Gene3D G3DSA:3.40.190.10 180 262 2.8E-20 T 29-03-2018 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 SUPERFAMILY SSF53850 91 290 3.86E-41 T 29-03-2018 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.6E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 Gene3D G3DSA:1.10.10.10 1 86 4.4E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07145 162594c6474fa0e7d8a81cbfb6e48a76 306 SUPERFAMILY SSF46785 1 84 1.18E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10385 80a6f3bc1352487de16247a492854c41 318 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 27 305 1.7E-58 T 29-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y880_RS10385 80a6f3bc1352487de16247a492854c41 318 SUPERFAMILY SSF53850 24 243 1.55E-43 T 29-03-2018 Y880_RS10385 80a6f3bc1352487de16247a492854c41 318 Gene3D G3DSA:3.40.190.10 20 122 4.2E-13 T 29-03-2018 Y880_RS10385 80a6f3bc1352487de16247a492854c41 318 SMART SM00062 25 239 2.3E-4 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS10385 80a6f3bc1352487de16247a492854c41 318 Gene3D G3DSA:3.40.190.10 123 312 7.5E-30 T 29-03-2018 Y880_RS10385 80a6f3bc1352487de16247a492854c41 318 Pfam PF09084 NMT1/THI5 like 65 188 7.4E-11 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS06715 524c9d7c6b84bbbdd9a743edc6eb9f33 48 Pfam PF16220 Domain of unknown function (DUF4880) 15 48 7.4E-13 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS07710 756125beafce250bd9c71e2687f3ae13 231 PIRSF PIRSF000441 20 224 3.7E-45 T 29-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 Y880_RS07710 756125beafce250bd9c71e2687f3ae13 231 Gene3D G3DSA:1.10.3130.10 2 92 4.4E-13 T 29-03-2018 Y880_RS07710 756125beafce250bd9c71e2687f3ae13 231 SUPERFAMILY SSF51161 36 198 5.96E-32 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS07710 756125beafce250bd9c71e2687f3ae13 231 Gene3D G3DSA:2.160.10.10 93 220 5.2E-24 T 29-03-2018 Y880_RS07710 756125beafce250bd9c71e2687f3ae13 231 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 155 189 3.3E-9 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS07710 756125beafce250bd9c71e2687f3ae13 231 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 101 142 4.6E-5 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS25865 3a1b5a61075e76d019801ea1552f09aa 464 ProSitePatterns PS01276 Peptidase family U32 signature. 166 184 - T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y880_RS25865 3a1b5a61075e76d019801ea1552f09aa 464 Gene3D G3DSA:3.20.20.70 6 177 2.3E-5 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS25865 3a1b5a61075e76d019801ea1552f09aa 464 Pfam PF01136 Peptidase family U32 80 337 9.8E-98 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y880_RS25865 3a1b5a61075e76d019801ea1552f09aa 464 Pfam PF16325 Peptidase family U32 C-terminal domain 354 435 7.0E-20 T 29-03-2018 IPR032525 Peptidase family U32, C-terminal Y880_RS13640 a73fc4983a8b55e234b5db48f8a7d3d4 125 Gene3D G3DSA:3.30.1330.40 6 125 6.5E-33 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS13640 a73fc4983a8b55e234b5db48f8a7d3d4 125 SUPERFAMILY SSF55298 13 124 6.6E-34 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS13640 a73fc4983a8b55e234b5db48f8a7d3d4 125 Pfam PF01042 Endoribonuclease L-PSP 15 120 2.5E-28 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 SUPERFAMILY SSF46894 163 236 2.48E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 190 1.4E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 206 218 1.4E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 206 1.4E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 Gene3D G3DSA:1.10.10.10 168 237 3.3E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 SUPERFAMILY SSF75516 4 166 1.44E-41 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 Gene3D G3DSA:3.30.450.80 1 167 1.4E-40 T 29-03-2018 Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 Pfam PF00196 Bacterial regulatory proteins, luxR family 175 230 7.2E-16 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 ProSitePatterns PS00622 LuxR-type HTH domain signature. 190 217 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 Pfam PF03472 Autoinducer binding domain 17 158 1.5E-36 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y880_RS06640 ec99ef81dc7a9d4be5fb76c15ff52681 237 SMART SM00421 173 230 4.5E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS27260 df06dcb6fe8002f80fe1c3deadf3a40b 475 TIGRFAM TIGR01773 GABAperm: GABA permease 1 461 3.9E-253 T 29-03-2018 IPR011265 GABA permease GO:0015185|GO:0015812|GO:0016021 Y880_RS27260 df06dcb6fe8002f80fe1c3deadf3a40b 475 Pfam PF00324 Amino acid permease 26 449 3.4E-117 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS27260 df06dcb6fe8002f80fe1c3deadf3a40b 475 PIRSF PIRSF006060 8 472 2.5E-73 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS27260 df06dcb6fe8002f80fe1c3deadf3a40b 475 ProSitePatterns PS00218 Amino acid permeases signature. 51 81 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS05820 8c33c45ffcdf2dcf9b4c19818311994f 94 Pfam PF14542 GCN5-related N-acetyl-transferase 15 88 3.9E-23 T 29-03-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase Y880_RS05820 8c33c45ffcdf2dcf9b4c19818311994f 94 Gene3D G3DSA:3.40.630.30 1 93 2.8E-20 T 29-03-2018 Y880_RS05820 8c33c45ffcdf2dcf9b4c19818311994f 94 SUPERFAMILY SSF55729 7 91 3.77E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 SUPERFAMILY SSF55785 75 153 4.01E-10 T 29-03-2018 IPR000014 PAS domain Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 Gene3D G3DSA:3.30.565.10 249 393 3.2E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 SMART SM00091 75 138 3.2E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 Gene3D G3DSA:3.30.450.20 56 173 3.0E-12 T 29-03-2018 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 SUPERFAMILY SSF55874 251 394 1.31E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 Pfam PF13188 PAS domain 76 130 3.4E-7 T 29-03-2018 IPR000014 PAS domain Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 SUPERFAMILY SSF47384 175 245 2.75E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 Pfam PF00512 His Kinase A (phospho-acceptor) domain 181 245 4.3E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 Gene3D G3DSA:1.10.287.130 174 243 4.0E-10 T 29-03-2018 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 SMART SM00388 181 247 3.0E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 SMART SM00387 287 393 3.8E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 371 1.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 352 1.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 1.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 390 1.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02350 e40ec59b431a6ec9d5f254023e3a918e 402 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 290 391 6.0E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS20975 4f12dcc75b59e1c6990c246496cfe41c 229 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 208 4.3E-16 T 29-03-2018 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 279 295 1.7E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 295 307 1.7E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 265 279 1.7E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 Pfam PF00196 Bacterial regulatory proteins, luxR family 264 318 1.1E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 SUPERFAMILY SSF46894 251 321 3.16E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 Gene3D G3DSA:3.30.450.40 25 167 5.7E-5 T 29-03-2018 IPR029016 GAF domain-like Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 SMART SM00421 262 319 6.3E-16 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17055 50b36c1c466542b169c3ed03cd830214 325 Gene3D G3DSA:1.10.10.10 168 322 5.2E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS21650 ed871157582991f3d6cd0d6198f1d4af 305 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 2.3E-110 T 29-03-2018 IPR010099 Epimerase family protein SDR39U1 Y880_RS21650 ed871157582991f3d6cd0d6198f1d4af 305 Gene3D G3DSA:3.40.50.720 1 303 1.7E-40 T 29-03-2018 Y880_RS21650 ed871157582991f3d6cd0d6198f1d4af 305 Pfam PF08338 Domain of unknown function (DUF1731) 250 296 2.0E-20 T 29-03-2018 IPR013549 Domain of unknown function DUF1731 Y880_RS21650 ed871157582991f3d6cd0d6198f1d4af 305 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 220 3.6E-25 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS21650 ed871157582991f3d6cd0d6198f1d4af 305 SUPERFAMILY SSF51735 1 301 1.31E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 Hamap MF_00577 Urocanate hydratase [hutU]. 3 556 51.041 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 PIRSF PIRSF001423 3 559 1.3E-297 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 Gene3D G3DSA:3.40.1770.10 196 555 1.1E-165 T 29-03-2018 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 Gene3D G3DSA:3.40.1770.10 10 152 5.6E-30 T 29-03-2018 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 0.0 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 Pfam PF01175 Urocanase Rossmann-like domain 141 349 4.0E-88 T 29-03-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 ProSitePatterns PS01233 Urocanase signature. 442 457 - T 29-03-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 Pfam PF17392 Urocanase C-terminal domain 352 546 2.6E-92 T 29-03-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 Pfam PF17391 Urocanase N-terminal domain 12 138 9.7E-63 T 29-03-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS24060 394d8212089590c79caf150cb2475e0a 559 SUPERFAMILY SSF111326 8 555 3.79E-264 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 Pfam PF00849 RNA pseudouridylate synthase 104 253 5.6E-31 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 Gene3D G3DSA:3.10.290.10 12 80 2.0E-14 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 20 316 6.9E-78 T 29-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 SMART SM00363 23 82 4.4E-7 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 SUPERFAMILY SSF55120 91 317 3.68E-59 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 Gene3D G3DSA:3.30.2350.10 94 318 1.1E-65 T 29-03-2018 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 Pfam PF01479 S4 domain 23 69 3.1E-9 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 142 156 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS12865 efca1fcab08f17c163428cb281547324 318 SUPERFAMILY SSF55174 22 73 3.34E-8 T 29-03-2018 Y880_RS06460 4ee2e9ef940af0498600e28ce7f83f47 251 Pfam PF13531 Bacterial extracellular solute-binding protein 27 250 4.4E-45 T 29-03-2018 Y880_RS06460 4ee2e9ef940af0498600e28ce7f83f47 251 SUPERFAMILY SSF53850 25 250 6.8E-64 T 29-03-2018 Y880_RS06460 4ee2e9ef940af0498600e28ce7f83f47 251 PIRSF PIRSF004846 1 251 7.7E-54 T 29-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 Y880_RS06460 4ee2e9ef940af0498600e28ce7f83f47 251 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 31 248 1.0E-77 T 29-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 Y880_RS06460 4ee2e9ef940af0498600e28ce7f83f47 251 Gene3D G3DSA:3.40.190.10 113 211 1.0E-29 T 29-03-2018 Y880_RS06460 4ee2e9ef940af0498600e28ce7f83f47 251 Gene3D G3DSA:3.40.190.10 20 112 8.0E-14 T 29-03-2018 Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 Pfam PF00263 Bacterial type II and III secretion system protein 549 705 4.3E-49 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 Pfam PF11741 AMIN domain 38 121 8.1E-7 T 29-03-2018 IPR021731 AMIN domain Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 281 706 1.8E-160 T 29-03-2018 IPR013355 Type IV pilus secretin PilQ Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 651 684 - T 29-03-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 Pfam PF03958 Bacterial type II/III secretion system short domain 381 449 2.8E-15 T 29-03-2018 IPR005644 NolW-like Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 545 569 9.4E-19 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 693 707 9.4E-19 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 449 459 9.4E-19 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 670 688 9.4E-19 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 580 590 9.4E-19 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 Pfam PF07660 Secretin and TonB N terminus short domain 307 353 1.6E-8 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS23755 a7a3067d8851f5e6ff8c34fbcb31e468 714 SMART SM00965 306 354 1.4E-10 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS05285 4b5f5b3b8cb499929030fa05edc27f9f 573 Pfam PF00916 Sulfate permease family 21 388 4.5E-93 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y880_RS05285 4b5f5b3b8cb499929030fa05edc27f9f 573 SUPERFAMILY SSF52091 441 552 1.29E-15 T 29-03-2018 IPR002645 STAS domain Y880_RS05285 4b5f5b3b8cb499929030fa05edc27f9f 573 Pfam PF01740 STAS domain 439 546 4.8E-18 T 29-03-2018 IPR002645 STAS domain Y880_RS05285 4b5f5b3b8cb499929030fa05edc27f9f 573 Gene3D G3DSA:3.30.750.24 427 562 8.8E-23 T 29-03-2018 IPR002645 STAS domain Y880_RS05285 4b5f5b3b8cb499929030fa05edc27f9f 573 TIGRFAM TIGR00815 sulP: sulfate permease 8 547 1.1E-125 T 29-03-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Y880_RS06675 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Gene3D G3DSA:2.30.110.10 13 214 1.1E-52 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS06675 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 180 214 1.4E-9 T 29-03-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS06675 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 45 122 1.3E-17 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS06675 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 26 214 6.3E-45 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS06675 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 184 197 - T 29-03-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS06675 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 PIRSF PIRSF000190 2 214 1.0E-60 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y880_RS06675 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 SUPERFAMILY SSF50475 13 214 2.16E-52 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS04435 11595ad5073fd56ad6789e7f121075b0 118 Gene3D G3DSA:3.40.50.10400 1 118 4.6E-24 T 29-03-2018 IPR027269 Hypothetical PA1492 domain Y880_RS04435 11595ad5073fd56ad6789e7f121075b0 118 SUPERFAMILY SSF52309 1 117 3.11E-42 T 29-03-2018 Y880_RS04435 11595ad5073fd56ad6789e7f121075b0 118 Pfam PF09152 Domain of unknown function (DUF1937) 2 112 3.1E-49 T 29-03-2018 IPR015235 Domain of unknown function DUF1937 Y880_RS04445 ebd392f5c762001774a5f4b3c9f1b196 551 Pfam PF13600 N-terminal domain of unknown function (DUF4140) 34 133 9.9E-23 T 29-03-2018 IPR025554 Domain of unknown function DUF4140 Y880_RS04445 ebd392f5c762001774a5f4b3c9f1b196 551 Pfam PF13598 Domain of unknown function (DUF4139) 221 543 7.0E-65 T 29-03-2018 IPR011935 Conserved hypothetical protein CHP02231 Y880_RS04445 ebd392f5c762001774a5f4b3c9f1b196 551 Gene3D G3DSA:1.20.1170.10 60 376 1.6E-5 T 29-03-2018 Y880_RS04445 ebd392f5c762001774a5f4b3c9f1b196 551 TIGRFAM TIGR02231 TIGR02231: conserved hypothetical protein 30 547 7.9E-207 T 29-03-2018 IPR011935 Conserved hypothetical protein CHP02231 Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 SUPERFAMILY SSF56349 8 288 2.21E-59 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 Pfam PF00589 Phage integrase family 113 283 5.1E-52 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 298 65.88 T 29-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 Gene3D G3DSA:1.10.443.10 112 292 1.6E-48 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 298 57.571 T 29-03-2018 IPR023009 Tyrosine recombinase XerC/XerD Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 11 297 1.8E-119 T 29-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 Gene3D G3DSA:1.10.150.130 5 108 8.1E-24 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal Y880_RS16850 7ef5027d1e9e1bad08f5f11c5f034a38 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 90 3.9E-19 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y880_RS00865 2bc341eee7b457fa0f838f9065af1d71 230 SUPERFAMILY SSF81606 19 203 8.5E-16 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS00865 2bc341eee7b457fa0f838f9065af1d71 230 Pfam PF13672 Protein phosphatase 2C 11 206 3.8E-33 T 29-03-2018 Y880_RS00865 2bc341eee7b457fa0f838f9065af1d71 230 Gene3D G3DSA:3.60.40.10 6 226 2.5E-15 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS10080 a62444a6fefb6da80d88eb26ba55b50f 579 Pfam PF07244 Surface antigen variable number repeat 190 249 7.3E-9 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y880_RS10080 a62444a6fefb6da80d88eb26ba55b50f 579 Gene3D G3DSA:2.40.160.50 223 578 5.3E-63 T 29-03-2018 Y880_RS10080 a62444a6fefb6da80d88eb26ba55b50f 579 Gene3D G3DSA:3.10.20.310 103 189 9.1E-11 T 29-03-2018 Y880_RS10080 a62444a6fefb6da80d88eb26ba55b50f 579 Pfam PF01103 Surface antigen 393 576 2.7E-32 T 29-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Y880_RS10080 a62444a6fefb6da80d88eb26ba55b50f 579 Pfam PF17243 POTRA domain TamA domain 1 29 101 1.2E-18 T 29-03-2018 IPR035243 TamA, POTRA domain 1 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 7 335 9.9E-187 T 29-03-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 108 7.7E-32 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 SMART SM00846 6 160 3.7E-68 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 Gene3D G3DSA:3.40.50.720 2 169 3.5E-57 T 29-03-2018 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 166 322 3.0E-50 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 Gene3D G3DSA:3.30.360.10 170 325 4.4E-52 T 29-03-2018 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 SUPERFAMILY SSF51735 7 175 4.38E-51 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 279 294 2.4E-24 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 115 128 2.4E-24 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 238 255 2.4E-24 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 181 197 2.4E-24 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 154 172 2.4E-24 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 PIRSF PIRSF000149 4 345 1.1E-131 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS29455 d9a860de488f409a211a52e6e8bdda8b 353 SUPERFAMILY SSF55347 160 324 3.27E-56 T 29-03-2018 Y880_RS10050 bdb0114b4cf81d070b39cfb93b348e62 209 Pfam PF01553 Acyltransferase 33 154 9.6E-16 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS10050 bdb0114b4cf81d070b39cfb93b348e62 209 SMART SM00563 34 157 5.6E-18 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS10050 bdb0114b4cf81d070b39cfb93b348e62 209 SUPERFAMILY SSF69593 17 205 1.7E-32 T 29-03-2018 Y880_RS10050 bdb0114b4cf81d070b39cfb93b348e62 209 Gene3D G3DSA:3.40.1130.10 17 204 3.9E-32 T 29-03-2018 Y880_RS22975 d8c23bf70c5b3958bbc6a9bd706075af 223 Hamap MF_01385 Urease accessory protein UreF [ureF]. 3 223 29.094 T 29-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 Y880_RS22975 d8c23bf70c5b3958bbc6a9bd706075af 223 PIRSF PIRSF009467 1 223 3.4E-57 T 29-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 Y880_RS22975 d8c23bf70c5b3958bbc6a9bd706075af 223 Pfam PF01730 UreF 35 181 4.0E-35 T 29-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 Y880_RS11960 26599546f6664e92a857f5c9385b163e 620 Pfam PF07514 Putative helicase 27 340 1.3E-128 T 29-03-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative Y880_RS11960 26599546f6664e92a857f5c9385b163e 620 SUPERFAMILY SSF46785 491 616 3.81E-43 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11960 26599546f6664e92a857f5c9385b163e 620 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 26 243 2.8E-88 T 29-03-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class Y880_RS11960 26599546f6664e92a857f5c9385b163e 620 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 493 616 7.5E-48 T 29-03-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal Y880_RS11960 26599546f6664e92a857f5c9385b163e 620 Gene3D G3DSA:2.40.10.200 511 615 1.0E-37 T 29-03-2018 Y880_RS11960 26599546f6664e92a857f5c9385b163e 620 SUPERFAMILY SSF109604 72 206 2.33E-5 T 29-03-2018 Y880_RS11960 26599546f6664e92a857f5c9385b163e 620 Gene3D G3DSA:1.10.3210.10 73 278 7.6E-7 T 29-03-2018 Y880_RS27770 ddda8bc5e2fd850ca778f3d212c2bd91 277 SUPERFAMILY SSF111364 23 276 1.2E-51 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 Y880_RS27770 ddda8bc5e2fd850ca778f3d212c2bd91 277 Gene3D G3DSA:2.40.230.20 18 276 3.5E-58 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 Y880_RS13880 e03a5ea0d6e4a4c0886ab7620044937e 242 Pfam PF09339 IclR helix-turn-helix domain 8 55 2.3E-10 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS13880 e03a5ea0d6e4a4c0886ab7620044937e 242 SMART SM00346 8 94 3.3E-7 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS13880 e03a5ea0d6e4a4c0886ab7620044937e 242 Gene3D G3DSA:1.10.10.10 1 75 4.5E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13880 e03a5ea0d6e4a4c0886ab7620044937e 242 Gene3D G3DSA:3.30.450.40 76 242 1.3E-36 T 29-03-2018 IPR029016 GAF domain-like Y880_RS13880 e03a5ea0d6e4a4c0886ab7620044937e 242 SUPERFAMILY SSF55781 62 241 2.42E-38 T 29-03-2018 IPR029016 GAF domain-like Y880_RS13880 e03a5ea0d6e4a4c0886ab7620044937e 242 SUPERFAMILY SSF46785 7 74 3.3E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13880 e03a5ea0d6e4a4c0886ab7620044937e 242 Pfam PF01614 Bacterial transcriptional regulator 128 238 7.5E-16 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 167 335 3.8E-52 T 29-03-2018 IPR000160 GGDEF domain Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 Gene3D G3DSA:3.30.70.270 170 342 2.2E-54 T 29-03-2018 Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 SMART SM00448 19 133 3.6E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 SUPERFAMILY SSF55073 176 336 4.39E-49 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 Pfam PF00990 Diguanylate cyclase, GGDEF domain 172 333 9.9E-50 T 29-03-2018 IPR000160 GGDEF domain Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 Pfam PF00072 Response regulator receiver domain 21 133 3.6E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 Gene3D G3DSA:3.40.50.2300 17 169 2.4E-28 T 29-03-2018 Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 SUPERFAMILY SSF52172 19 151 1.01E-29 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS16665 d4e0a1be1dd767b04702d1762cf6a567 347 SMART SM00267 160 337 1.5E-60 T 29-03-2018 IPR000160 GGDEF domain Y880_RS04210 a330790c31a5e4dcbb607e204d52a949 258 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 255 1.5E-82 T 29-03-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 Y880_RS04210 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 1.0E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS04210 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 1.0E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS04210 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.0E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS04210 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 1.0E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS04210 a330790c31a5e4dcbb607e204d52a949 258 Pfam PF01311 Bacterial export proteins, family 1 14 243 7.8E-68 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS23505 e73f71a5c91a66251620cf72d113e00b 402 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 226 1.9E-23 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS23505 e73f71a5c91a66251620cf72d113e00b 402 SUPERFAMILY SSF56645 8 254 4.19E-47 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS23505 e73f71a5c91a66251620cf72d113e00b 402 Gene3D G3DSA:1.20.140.10 226 402 2.6E-43 T 29-03-2018 Y880_RS23505 e73f71a5c91a66251620cf72d113e00b 402 Gene3D G3DSA:2.40.110.10 133 225 2.4E-35 T 29-03-2018 Y880_RS23505 e73f71a5c91a66251620cf72d113e00b 402 Gene3D G3DSA:1.10.540.10 1 132 7.4E-18 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS23505 e73f71a5c91a66251620cf72d113e00b 402 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 394 7.4E-41 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS23505 e73f71a5c91a66251620cf72d113e00b 402 SUPERFAMILY SSF47203 241 396 3.54E-37 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 4.7E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 Gene3D G3DSA:3.40.190.10 101 184 3.7E-10 T 29-03-2018 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 Gene3D G3DSA:3.40.190.10 185 272 3.4E-25 T 29-03-2018 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 SUPERFAMILY SSF53850 98 305 1.14E-47 T 29-03-2018 Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 Pfam PF03466 LysR substrate binding domain 97 301 3.2E-50 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 SUPERFAMILY SSF46785 11 97 4.96E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08630 10faab6a2c8392440e0f7a548a5b829e 312 Gene3D G3DSA:1.10.10.10 7 93 2.1E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09485 de92a49b2e4171b68f2eef4ead9018de 187 SUPERFAMILY SSF88946 18 94 8.63E-14 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09485 de92a49b2e4171b68f2eef4ead9018de 187 Pfam PF08281 Sigma-70, region 4 118 168 1.7E-12 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09485 de92a49b2e4171b68f2eef4ead9018de 187 Gene3D G3DSA:1.10.1740.10 3 87 1.1E-12 T 29-03-2018 Y880_RS09485 de92a49b2e4171b68f2eef4ead9018de 187 Pfam PF04542 Sigma-70 region 2 20 83 1.9E-13 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09485 de92a49b2e4171b68f2eef4ead9018de 187 SUPERFAMILY SSF88659 103 173 6.73E-13 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS09485 de92a49b2e4171b68f2eef4ead9018de 187 Gene3D G3DSA:1.10.10.10 95 179 1.2E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09485 de92a49b2e4171b68f2eef4ead9018de 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 169 4.4E-22 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS18650 674faf8663a2bca2ddc215f5163c8d50 381 Gene3D G3DSA:2.60.40.1090 240 381 6.9E-20 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS18650 674faf8663a2bca2ddc215f5163c8d50 381 Pfam PF00419 Fimbrial protein 241 380 2.9E-6 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS18650 674faf8663a2bca2ddc215f5163c8d50 381 SUPERFAMILY SSF49401 242 380 2.39E-17 T 29-03-2018 IPR008966 Adhesion domain Y880_RS20700 3bfce3ec33e9763216229c8daea4edb8 166 PIRSF PIRSF018472 5 166 1.6E-54 T 29-03-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type Y880_RS20700 3bfce3ec33e9763216229c8daea4edb8 166 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 12 156 1.5E-36 T 29-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Y880_RS20700 3bfce3ec33e9763216229c8daea4edb8 166 Pfam PF04093 rod shape-determining protein MreD 10 158 4.6E-40 T 29-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 SUPERFAMILY SSF46609 1 84 1.83E-36 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 1.8E-39 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 Gene3D G3DSA:1.10.287.990 20 82 2.2E-27 T 29-03-2018 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 29-03-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 3.6E-23 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 3.6E-23 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.6E-23 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.6E-23 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 3.6E-23 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 SUPERFAMILY SSF54719 81 192 9.17E-46 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 2.0E-35 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS20120 4ce1178654a1b617a78254e9d2e847bd 193 PIRSF PIRSF000349 1 193 4.3E-87 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 Y880_RS25020 bea51cdb2ffe2aab52b337bba98142a2 389 SUPERFAMILY SSF103473 5 381 4.32E-30 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS25020 bea51cdb2ffe2aab52b337bba98142a2 389 Gene3D G3DSA:1.20.1250.20 3 192 4.9E-21 T 29-03-2018 Y880_RS25020 bea51cdb2ffe2aab52b337bba98142a2 389 Gene3D G3DSA:1.20.1250.20 201 388 3.0E-4 T 29-03-2018 Y880_RS25020 bea51cdb2ffe2aab52b337bba98142a2 389 Pfam PF07690 Major Facilitator Superfamily 11 331 1.6E-16 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS25020 bea51cdb2ffe2aab52b337bba98142a2 389 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 Gene3D G3DSA:2.40.110.10 138 234 6.1E-17 T 29-03-2018 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 SUPERFAMILY SSF47203 249 409 1.34E-20 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 252 386 2.2E-21 T 29-03-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 132 3.2E-8 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 20 411 4.5E-177 T 29-03-2018 IPR023922 Sulphate-starvation-induced SfnB Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 148 226 7.6E-10 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 Gene3D G3DSA:1.10.540.10 8 135 1.9E-14 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 PIRSF PIRSF016578 19 402 3.2E-26 T 29-03-2018 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 Gene3D G3DSA:1.20.140.10 235 410 3.0E-19 T 29-03-2018 Y880_RS09075 ab0274837bce5dbb46b776ccf2a03227 411 SUPERFAMILY SSF56645 33 234 3.66E-44 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS10900 0ae68533ed27187145ec4822bc7b2e1b 108 Pfam PF00085 Thioredoxin 19 99 3.1E-14 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 Y880_RS10900 0ae68533ed27187145ec4822bc7b2e1b 108 SUPERFAMILY SSF52833 19 106 7.72E-21 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS10900 0ae68533ed27187145ec4822bc7b2e1b 108 Gene3D G3DSA:3.40.30.10 1 108 7.0E-20 T 29-03-2018 Y880_RS19480 0584c53260dd3c6ac75a1348a178b33a 144 Gene3D G3DSA:3.100.10.10 41 143 1.6E-21 T 29-03-2018 Y880_RS19480 0584c53260dd3c6ac75a1348a178b33a 144 SUPERFAMILY SSF52080 4 142 2.62E-42 T 29-03-2018 IPR021131 Ribosomal protein L18e/L15P Y880_RS19480 0584c53260dd3c6ac75a1348a178b33a 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 17.557 T 29-03-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 Y880_RS19480 0584c53260dd3c6ac75a1348a178b33a 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 3.2E-27 T 29-03-2018 IPR021131 Ribosomal protein L18e/L15P Y880_RS19480 0584c53260dd3c6ac75a1348a178b33a 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 142 2.4E-43 T 29-03-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19480 0584c53260dd3c6ac75a1348a178b33a 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 29-03-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS22480 54a1402f50f0563f623e992d28d6aa90 125 SUPERFAMILY SSF75169 10 125 7.06E-16 T 29-03-2018 IPR027396 DsrEFH-like Y880_RS22480 54a1402f50f0563f623e992d28d6aa90 125 Gene3D G3DSA:3.40.1260.10 4 125 3.1E-22 T 29-03-2018 Y880_RS22480 54a1402f50f0563f623e992d28d6aa90 125 Pfam PF02635 DsrE/DsrF-like family 9 124 1.3E-15 T 29-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein Y880_RS27585 84e5987c60d3da52093b294e30dd4592 300 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 16 280 2.6E-53 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS27585 84e5987c60d3da52093b294e30dd4592 300 Gene3D G3DSA:3.60.130.10 1 300 5.1E-74 T 29-03-2018 Y880_RS27585 84e5987c60d3da52093b294e30dd4592 300 SUPERFAMILY SSF51197 13 296 3.53E-89 T 29-03-2018 Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 Hamap MF_00625 Selenide, water dikinase [selD]. 4 344 44.911 T 29-03-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 TIGRFAM TIGR00476 selD: selenide, water dikinase 6 311 3.4E-134 T 29-03-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 Pfam PF02769 AIR synthase related protein, C-terminal domain 168 343 6.6E-33 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 SUPERFAMILY SSF55326 6 158 1.7E-38 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 Gene3D G3DSA:3.90.650.10 163 344 3.3E-42 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 SUPERFAMILY SSF56042 163 339 3.59E-50 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 PIRSF PIRSF036407 1 344 1.7E-113 T 29-03-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 156 1.7E-19 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS05255 1e4f24254ce16f88d0a55cc62d5ca431 344 Gene3D G3DSA:3.30.1330.10 1 161 1.2E-35 T 29-03-2018 IPR016188 PurM-like, N-terminal domain Y880_RS20730 e55bc40cf2eab9b3fc8de01bcc110345 125 Pfam PF03330 Lytic transglycolase 33 121 1.7E-28 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y880_RS20730 e55bc40cf2eab9b3fc8de01bcc110345 125 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 34 124 4.7E-43 T 29-03-2018 IPR012997 Rare lipoprotein A Y880_RS20730 e55bc40cf2eab9b3fc8de01bcc110345 125 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 5 124 23.757 T 29-03-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 Y880_RS20730 e55bc40cf2eab9b3fc8de01bcc110345 125 SUPERFAMILY SSF50685 30 121 1.92E-13 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y880_RS20730 e55bc40cf2eab9b3fc8de01bcc110345 125 Gene3D G3DSA:2.40.40.10 22 123 5.2E-24 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y880_RS17195 3e1086959f88473fc41e062502d698e7 382 SUPERFAMILY SSF53383 2 381 7.71E-104 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS17195 3e1086959f88473fc41e062502d698e7 382 Gene3D G3DSA:3.90.1150.10 281 382 1.8E-18 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS17195 3e1086959f88473fc41e062502d698e7 382 Gene3D G3DSA:3.40.640.10 39 280 1.2E-65 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS17195 3e1086959f88473fc41e062502d698e7 382 Pfam PF00155 Aminotransferase class I and II 27 379 4.7E-61 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS21495 6c9a39f8e9574bdc4cc60401062355e5 332 Pfam PF08468 Methyltransferase small domain N-terminal 5 153 3.1E-40 T 29-03-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS21495 6c9a39f8e9574bdc4cc60401062355e5 332 Pfam PF05175 Methyltransferase small domain 161 327 6.7E-54 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 Y880_RS21495 6c9a39f8e9574bdc4cc60401062355e5 332 Gene3D G3DSA:3.40.50.150 146 332 1.6E-28 T 29-03-2018 Y880_RS21495 6c9a39f8e9574bdc4cc60401062355e5 332 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 1 331 41.205 T 29-03-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS21495 6c9a39f8e9574bdc4cc60401062355e5 332 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 260 266 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS21495 6c9a39f8e9574bdc4cc60401062355e5 332 SUPERFAMILY SSF53335 93 306 7.23E-27 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS28355 4c362dbea672b21f9b0d4c5e71af5614 266 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 254 1.8E-84 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Y880_RS28355 4c362dbea672b21f9b0d4c5e71af5614 266 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 259 20.041 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Y880_RS28355 4c362dbea672b21f9b0d4c5e71af5614 266 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 259 3.8E-86 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Y880_RS28355 4c362dbea672b21f9b0d4c5e71af5614 266 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 Pfam PF00691 OmpA family 363 457 5.1E-9 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 Pfam PF12849 PBP superfamily domain 104 313 6.4E-26 T 29-03-2018 IPR024370 PBP domain Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 SUPERFAMILY SSF103088 340 463 3.27E-20 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 Gene3D G3DSA:3.30.1330.60 332 464 3.8E-19 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 SUPERFAMILY SSF53850 51 71 4.89E-60 T 29-03-2018 Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 SUPERFAMILY SSF53850 102 374 4.89E-60 T 29-03-2018 Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 Gene3D G3DSA:3.40.190.10 173 291 9.5E-29 T 29-03-2018 Y880_RS10105 7692994cf3532cba9e1ae37b4b445563 464 Gene3D G3DSA:3.40.190.10 48 172 4.2E-15 T 29-03-2018 Y880_RS10910 54ad2b9c47a0724b551287d23ec747d1 297 SMART SM00342 203 286 1.3E-27 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS10910 54ad2b9c47a0724b551287d23ec747d1 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS10910 54ad2b9c47a0724b551287d23ec747d1 297 Gene3D G3DSA:1.10.10.60 245 296 2.5E-12 T 29-03-2018 Y880_RS10910 54ad2b9c47a0724b551287d23ec747d1 297 SUPERFAMILY SSF46689 239 287 1.88E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS10910 54ad2b9c47a0724b551287d23ec747d1 297 Gene3D G3DSA:1.10.10.60 189 244 1.0E-17 T 29-03-2018 Y880_RS10910 54ad2b9c47a0724b551287d23ec747d1 297 SUPERFAMILY SSF46689 187 237 8.21E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS10910 54ad2b9c47a0724b551287d23ec747d1 297 Pfam PF12833 Helix-turn-helix domain 209 287 8.4E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS08615 f7a0b19517a61cf0a42c54c2e0956ac5 291 SUPERFAMILY SSF51197 22 277 2.2E-54 T 29-03-2018 Y880_RS08615 f7a0b19517a61cf0a42c54c2e0956ac5 291 Gene3D G3DSA:3.60.130.10 1 291 1.5E-54 T 29-03-2018 Y880_RS08615 f7a0b19517a61cf0a42c54c2e0956ac5 291 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 43 275 1.1E-38 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS22530 7bf10de7ae240e945f6536ea73af9637 468 SUPERFAMILY SSF53383 20 457 1.53E-113 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS22530 7bf10de7ae240e945f6536ea73af9637 468 PIRSF PIRSF000521 19 458 7.1E-25 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS22530 7bf10de7ae240e945f6536ea73af9637 468 Pfam PF00202 Aminotransferase class-III 39 452 2.0E-83 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS22530 7bf10de7ae240e945f6536ea73af9637 468 Gene3D G3DSA:3.90.1150.10 8 82 9.0E-4 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS22530 7bf10de7ae240e945f6536ea73af9637 468 Gene3D G3DSA:3.40.640.10 83 336 6.3E-42 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS22530 7bf10de7ae240e945f6536ea73af9637 468 Gene3D G3DSA:3.90.1150.10 337 467 3.2E-36 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 Pfam PF00072 Response regulator receiver domain 11 125 2.5E-11 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 8.5E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 8.5E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 8.5E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 SUPERFAMILY SSF46894 141 204 3.74E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 Gene3D G3DSA:3.40.50.2300 10 147 1.6E-13 T 29-03-2018 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 SUPERFAMILY SSF52172 10 137 3.95E-13 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 SMART SM00421 146 203 1.3E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 201 4.1E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 Gene3D G3DSA:1.10.10.10 148 208 2.7E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12465 5127963adc56ad285192ccb8a1ecdbc4 212 SMART SM00448 8 125 2.3E-5 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13480 feb8c42a947bacadf27bb777a17c2594 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 6.0E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS13480 feb8c42a947bacadf27bb777a17c2594 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 6.0E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS13480 feb8c42a947bacadf27bb777a17c2594 345 Gene3D G3DSA:1.10.10.60 283 345 1.1E-12 T 29-03-2018 Y880_RS13480 feb8c42a947bacadf27bb777a17c2594 345 SUPERFAMILY SSF46689 292 341 4.93E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS13480 feb8c42a947bacadf27bb777a17c2594 345 Pfam PF12833 Helix-turn-helix domain 262 339 2.9E-14 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS13480 feb8c42a947bacadf27bb777a17c2594 345 SMART SM00342 256 338 9.3E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS13480 feb8c42a947bacadf27bb777a17c2594 345 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 27 210 8.6E-48 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS23855 9ebad601b4b9efe2f830b690f61e40d5 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 7.2E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS23855 9ebad601b4b9efe2f830b690f61e40d5 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 7.2E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS23855 9ebad601b4b9efe2f830b690f61e40d5 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 1.7E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS23855 9ebad601b4b9efe2f830b690f61e40d5 210 Pfam PF13972 Bacterial transcriptional repressor 56 192 8.7E-32 T 29-03-2018 IPR025722 Bacterial transcriptional repressor TetR Y880_RS23855 9ebad601b4b9efe2f830b690f61e40d5 210 SUPERFAMILY SSF46689 2 65 3.95E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS23855 9ebad601b4b9efe2f830b690f61e40d5 210 Gene3D G3DSA:1.10.357.10 2 207 3.3E-31 T 29-03-2018 Y880_RS21085 a0b0537939d3acab77007eaa7de134c5 168 SUPERFAMILY SSF54523 10 140 1.49E-17 T 29-03-2018 Y880_RS21085 a0b0537939d3acab77007eaa7de134c5 168 Gene3D G3DSA:3.30.700.10 10 167 1.5E-14 T 29-03-2018 Y880_RS21085 a0b0537939d3acab77007eaa7de134c5 168 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21085 a0b0537939d3acab77007eaa7de134c5 168 Pfam PF12019 Type II transport protein GspH 45 153 1.0E-12 T 29-03-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y880_RS21085 a0b0537939d3acab77007eaa7de134c5 168 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 3.4E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS15330 e18a041f324c9163b551debc4553eec6 262 SUPERFAMILY SSF161098 55 236 7.85E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS15330 e18a041f324c9163b551debc4553eec6 262 Gene3D G3DSA:1.10.3720.10 10 253 6.1E-31 T 29-03-2018 Y880_RS15330 e18a041f324c9163b551debc4553eec6 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 245 4.0E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS06050 61a3e6540a6532be613dffa9f9ffc506 443 Pfam PF01145 SPFH domain / Band 7 family 33 287 1.4E-38 T 29-03-2018 IPR001107 Band 7 domain Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 Pfam PF03797 Autotransporter beta-domain 380 626 2.4E-41 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 Gene3D G3DSA:2.40.128.130 317 647 3.3E-38 T 29-03-2018 Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 Pfam PF04389 Peptidase family M28 82 286 1.1E-27 T 29-03-2018 IPR007484 Peptidase M28 Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 Gene3D G3DSA:3.40.630.10 27 316 1.7E-37 T 29-03-2018 Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 479 647 1.8E-14 T 29-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 SUPERFAMILY SSF53187 38 286 9.71E-41 T 29-03-2018 Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 SMART SM00869 366 636 1.9E-37 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS28280 b56e24dd5a0f426b1c35466b0b440b10 647 SUPERFAMILY SSF103515 337 647 1.83E-36 T 29-03-2018 IPR005546 Autotransporter beta-domain Y880_RS11285 d9d4bdb12db35ccadaa129c6f4b6b975 147 Pfam PF05232 Chlorhexidine efflux transporter 3 65 4.1E-17 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter Y880_RS11285 d9d4bdb12db35ccadaa129c6f4b6b975 147 Pfam PF05232 Chlorhexidine efflux transporter 71 133 5.3E-23 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter Y880_RS22570 dcfede94b1d3f1e218f227e2e1f64987 309 Gene3D G3DSA:3.40.50.1820 24 309 1.2E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS22570 dcfede94b1d3f1e218f227e2e1f64987 309 SUPERFAMILY SSF53474 27 305 2.78E-49 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS22570 dcfede94b1d3f1e218f227e2e1f64987 309 Pfam PF00561 alpha/beta hydrolase fold 33 135 1.2E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS12950 dc07b0402faa1def170e228cce856999 240 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 231 5.6E-34 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y880_RS12950 dc07b0402faa1def170e228cce856999 240 SUPERFAMILY SSF51695 2 237 1.65E-61 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS12950 dc07b0402faa1def170e228cce856999 240 Gene3D G3DSA:3.20.20.190 1 240 3.6E-58 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 Gene3D G3DSA:1.10.287.130 224 288 2.6E-6 T 29-03-2018 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 SUPERFAMILY SSF47384 217 292 8.44E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 Gene3D G3DSA:3.30.565.10 325 446 7.7E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 292 2.7E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 SMART SM00304 177 233 1.6E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 SUPERFAMILY SSF55874 282 444 1.7E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 444 1.8E-14 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 SMART SM00387 338 446 1.1E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF16750 Sensor domain of 2-component histidine kinase 38 148 2.4E-37 T 29-03-2018 IPR031930 2-component histidine kinase, sensor domain Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 4.0E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 4.0E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 4.0E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 SUPERFAMILY SSF158472 177 229 1.31E-5 T 29-03-2018 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF00672 HAMP domain 177 229 2.3E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10870 842a0b5f322a1e5ab9822c8665d43481 446 SMART SM00388 234 293 4.4E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS04905 a08d8d99a1a0c71a780c75428c6a9de1 93 Hamap MF_01537 UPF0345 protein YaiE [yaiE]. 1 93 25.887 T 29-03-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase Y880_RS04905 a08d8d99a1a0c71a780c75428c6a9de1 93 Gene3D G3DSA:2.60.120.10 3 92 1.0E-36 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS04905 a08d8d99a1a0c71a780c75428c6a9de1 93 SUPERFAMILY SSF51182 1 92 2.14E-36 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS04905 a08d8d99a1a0c71a780c75428c6a9de1 93 Pfam PF06865 Protein of unknown function (DUF1255) 3 92 4.0E-37 T 29-03-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase Y880_RS09835 d77096b72992bab681ea2e2030f7c9a3 151 Pfam PF14437 MafB19-like deaminase 2 111 1.3E-21 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Y880_RS09835 d77096b72992bab681ea2e2030f7c9a3 151 Gene3D G3DSA:3.40.140.10 1 151 9.6E-38 T 29-03-2018 Y880_RS09835 d77096b72992bab681ea2e2030f7c9a3 151 SUPERFAMILY SSF53927 2 127 8.2E-41 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y880_RS09835 d77096b72992bab681ea2e2030f7c9a3 151 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 89 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 117 3.1E-40 T 29-03-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 SUPERFAMILY SSF49472 1 117 1.57E-42 T 29-03-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 PRINTS PR00189 Transthyretin signature 95 117 1.1E-7 T 29-03-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 PRINTS PR00189 Transthyretin signature 3 23 1.1E-7 T 29-03-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 ProSitePatterns PS00769 Transthyretin signature 2. 100 112 - T 29-03-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 Pfam PF00576 HIUase/Transthyretin family 4 116 1.5E-35 T 29-03-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 29-03-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y880_RS04560 98d4708e9008f7da263f25bc1d059da5 117 Gene3D G3DSA:2.60.40.180 1 117 3.7E-38 T 29-03-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y880_RS28525 9433f0a69551f271c5f8d5c3721884fc 223 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 1.0E-85 T 29-03-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 Y880_RS28525 9433f0a69551f271c5f8d5c3721884fc 223 Gene3D G3DSA:3.40.50.300 1 222 6.3E-63 T 29-03-2018 Y880_RS28525 9433f0a69551f271c5f8d5c3721884fc 223 Pfam PF00005 ABC transporter 18 165 1.1E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS28525 9433f0a69551f271c5f8d5c3721884fc 223 SUPERFAMILY SSF52540 1 218 1.06E-66 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28525 9433f0a69551f271c5f8d5c3721884fc 223 SMART SM00382 27 214 6.8E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21355 41419f0a17d2118e5154ebe144f75cad 417 PIRSF PIRSF000412 2 417 2.0E-168 T 29-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y880_RS21355 41419f0a17d2118e5154ebe144f75cad 417 Gene3D G3DSA:3.90.1150.10 275 415 2.6E-59 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS21355 41419f0a17d2118e5154ebe144f75cad 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 29-03-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y880_RS21355 41419f0a17d2118e5154ebe144f75cad 417 SUPERFAMILY SSF53383 6 416 4.13E-182 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS21355 41419f0a17d2118e5154ebe144f75cad 417 Pfam PF00464 Serine hydroxymethyltransferase 9 385 9.4E-183 T 29-03-2018 Y880_RS21355 41419f0a17d2118e5154ebe144f75cad 417 Gene3D G3DSA:3.40.640.10 37 274 6.5E-52 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS21355 41419f0a17d2118e5154ebe144f75cad 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 416 53.164 T 29-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y880_RS05970 104f6655893989db172328c7972d8cfd 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 35 189 1.7E-30 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS05970 104f6655893989db172328c7972d8cfd 196 Gene3D G3DSA:1.10.10.10 108 193 2.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05970 104f6655893989db172328c7972d8cfd 196 SUPERFAMILY SSF88946 15 122 2.04E-27 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS05970 104f6655893989db172328c7972d8cfd 196 Gene3D G3DSA:1.10.1740.10 13 107 1.3E-26 T 29-03-2018 Y880_RS05970 104f6655893989db172328c7972d8cfd 196 Pfam PF04542 Sigma-70 region 2 39 106 2.1E-19 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS05970 104f6655893989db172328c7972d8cfd 196 Pfam PF04545 Sigma-70, region 4 139 188 9.9E-12 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS05970 104f6655893989db172328c7972d8cfd 196 SUPERFAMILY SSF88659 130 191 1.83E-10 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS07190 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Gene3D G3DSA:1.20.1050.10 98 212 3.3E-24 T 29-03-2018 Y880_RS07190 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Pfam PF13410 Glutathione S-transferase, C-terminal domain 138 196 1.3E-6 T 29-03-2018 Y880_RS07190 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 SUPERFAMILY SSF52833 1 92 6.87E-25 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS07190 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 SUPERFAMILY SSF47616 84 210 3.76E-29 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS07190 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 209 3.9E-89 T 29-03-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-71182 Y880_RS07190 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 82 9.0E-18 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS07190 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Gene3D G3DSA:3.40.30.10 1 97 2.3E-28 T 29-03-2018 Y880_RS01920 82b9b080b196e4acb99459088951c36e 51 Pfam PF12773 Double zinc ribbon 3 47 7.0E-10 T 29-03-2018 IPR025874 Double zinc ribbon Y880_RS01920 82b9b080b196e4acb99459088951c36e 51 Gene3D G3DSA:2.20.28.20 28 51 0.027 T 29-03-2018 Y880_RS01920 82b9b080b196e4acb99459088951c36e 51 Gene3D G3DSA:2.20.28.20 2 27 0.0072 T 29-03-2018 Y880_RS09150 777da663c49053a862d09c3e8884005f 1271 Pfam PF14331 ImcF-related N-terminal domain 115 352 2.8E-49 T 29-03-2018 IPR025743 ImcF-related, N-terminal domain Y880_RS24480 f42976a0d8f0e49d7d56c3b8903e4320 145 SMART SM00257 95 144 5.6E-10 T 29-03-2018 IPR018392 LysM domain Y880_RS24480 f42976a0d8f0e49d7d56c3b8903e4320 145 SUPERFAMILY SSF54106 94 144 9.16E-7 T 29-03-2018 IPR018392 LysM domain Y880_RS24480 f42976a0d8f0e49d7d56c3b8903e4320 145 Pfam PF01476 LysM domain 96 144 1.1E-11 T 29-03-2018 IPR018392 LysM domain Y880_RS24480 f42976a0d8f0e49d7d56c3b8903e4320 145 Gene3D G3DSA:3.10.350.10 89 145 4.3E-15 T 29-03-2018 Y880_RS24480 f42976a0d8f0e49d7d56c3b8903e4320 145 Pfam PF04972 BON domain 22 87 5.5E-13 T 29-03-2018 IPR007055 BON domain Y880_RS21345 682e56cd29a54aeb5a218dcdb40801d3 187 Gene3D G3DSA:1.10.357.10 6 187 1.0E-17 T 29-03-2018 Y880_RS21345 682e56cd29a54aeb5a218dcdb40801d3 187 ProSitePatterns PS00356 LacI-type HTH domain signature. 26 44 - T 29-03-2018 Y880_RS21345 682e56cd29a54aeb5a218dcdb40801d3 187 SUPERFAMILY SSF48498 81 172 1.13E-12 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS21345 682e56cd29a54aeb5a218dcdb40801d3 187 SUPERFAMILY SSF46689 23 79 2.84E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS29235 e2c28a98f222c7b2271a6ccb406f8fd3 493 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 21 92 2.9E-13 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29235 e2c28a98f222c7b2271a6ccb406f8fd3 493 Pfam PF02239 Cytochrome D1 heme domain 129 484 2.9E-149 T 29-03-2018 Y880_RS29235 e2c28a98f222c7b2271a6ccb406f8fd3 493 Gene3D G3DSA:1.10.760.10 12 113 1.6E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29235 e2c28a98f222c7b2271a6ccb406f8fd3 493 Gene3D G3DSA:2.140.10.20 114 487 5.2E-78 T 29-03-2018 Y880_RS29235 e2c28a98f222c7b2271a6ccb406f8fd3 493 SUPERFAMILY SSF51004 102 485 5.62E-90 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain Y880_RS29235 e2c28a98f222c7b2271a6ccb406f8fd3 493 SUPERFAMILY SSF46626 7 111 4.94E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82714 187 267 2.62E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82714 710 789 6.8E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82693 45 129 1.1E-19 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 Gene3D G3DSA:3.30.70.1430 559 656 1.1E-11 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82693 141 186 1.99E-23 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82693 272 328 1.99E-23 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 Gene3D G3DSA:3.30.2090.10 185 273 4.6E-12 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82693 555 652 1.78E-13 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 Gene3D G3DSA:1.20.1640.10 810 1027 1.7E-36 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 Gene3D G3DSA:1.20.1640.10 285 505 8.9E-43 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 609 623 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 5.6E-60 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 Gene3D G3DSA:3.30.70.1430 44 146 4.8E-22 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82866 794 1018 2.09E-44 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 Pfam PF00873 AcrB/AcrD/AcrF family 9 1014 1.0E-295 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 SUPERFAMILY SSF82866 294 494 1.01E-44 T 29-03-2018 Y880_RS04150 2f31d21d761b37732b8bab46cd36babd 1036 Gene3D G3DSA:3.30.2090.10 705 792 4.0E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y880_RS12900 e9fe797aa18609ccd8c92bc5d6fa88be 332 SUPERFAMILY SSF52540 53 191 7.53E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12900 e9fe797aa18609ccd8c92bc5d6fa88be 332 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 3 331 39.24 T 29-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 Y880_RS12900 e9fe797aa18609ccd8c92bc5d6fa88be 332 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 27 313 2.7E-79 T 29-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 Y880_RS12900 e9fe797aa18609ccd8c92bc5d6fa88be 332 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 326 1.2E-106 T 29-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 Y880_RS12900 e9fe797aa18609ccd8c92bc5d6fa88be 332 Gene3D G3DSA:3.40.50.300 51 198 1.1E-9 T 29-03-2018 Y880_RS06370 118c2a494b4218e42c4012d3736bf7c7 762 Gene3D G3DSA:1.10.760.10 32 210 5.1E-4 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS06370 118c2a494b4218e42c4012d3736bf7c7 762 Pfam PF06934 Fatty acid cis/trans isomerase (CTI) 79 761 1.2E-287 T 29-03-2018 IPR010706 Fatty acid cis-trans isomerase Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 29-03-2018 IPR033135 ClpP, histidine active site Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 3.0E-27 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 3.0E-27 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 3.0E-27 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 3.0E-27 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 Gene3D G3DSA:3.90.226.10 12 194 1.8E-35 T 29-03-2018 Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 Pfam PF00574 Clp protease 19 192 4.8E-64 T 29-03-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 SUPERFAMILY SSF52096 16 194 1.67E-54 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS14705 54a0ae541ff817f80c4e3037317c3122 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 1 193 32.757 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y880_RS05340 aabd50e17ee1ef9c01558c66942fa8ce 168 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 6 158 7.4E-53 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS05340 aabd50e17ee1ef9c01558c66942fa8ce 168 PIRSF PIRSF028301 1 168 1.5E-56 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS05340 aabd50e17ee1ef9c01558c66942fa8ce 168 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 3 158 4.7E-51 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS25285 06344119da127168214d1efdf1c700bc 123 Pfam PF09685 Domain of unknown function (DUF4870) 17 122 4.3E-40 T 29-03-2018 IPR019109 Protein of unknown function DUF4870 Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 4 432 5.8E-213 T 29-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 PIRSF PIRSF000423 1 432 1.2E-192 T 29-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 SUPERFAMILY SSF53633 3 283 6.84E-63 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 SUPERFAMILY SSF55729 253 409 1.2E-18 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 Pfam PF00583 Acetyltransferase (GNAT) family 321 398 2.9E-9 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 432 222.198 T 29-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 Gene3D G3DSA:3.40.630.30 287 431 3.6E-21 T 29-03-2018 Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 Pfam PF00696 Amino acid kinase family 25 259 1.0E-18 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS24620 a9324c57adf80ac2d843be9dbee9a77f 432 Gene3D G3DSA:3.40.1160.10 2 285 7.7E-57 T 29-03-2018 Y880_RS24735 4ef7f8687759cdb74cd5394ee2b986fc 104 Pfam PF05164 Cell division protein ZapA 8 90 3.5E-23 T 29-03-2018 IPR007838 Cell division protein ZapA-like Y880_RS24735 4ef7f8687759cdb74cd5394ee2b986fc 104 SUPERFAMILY SSF102829 7 96 3.14E-25 T 29-03-2018 IPR007838 Cell division protein ZapA-like Y880_RS04420 10ee803069acf94e294f802886abb750 469 SUPERFAMILY SSF54373 229 323 2.22E-9 T 29-03-2018 Y880_RS04420 10ee803069acf94e294f802886abb750 469 Pfam PF04324 BFD-like [2Fe-2S] binding domain 400 451 8.1E-9 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y880_RS04420 10ee803069acf94e294f802886abb750 469 SUPERFAMILY SSF51905 336 381 1.25E-42 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04420 10ee803069acf94e294f802886abb750 469 SUPERFAMILY SSF51905 12 231 1.25E-42 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04420 10ee803069acf94e294f802886abb750 469 Pfam PF01266 FAD dependent oxidoreductase 13 361 1.8E-54 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS04420 10ee803069acf94e294f802886abb750 469 Gene3D G3DSA:3.30.9.10 94 174 2.6E-8 T 29-03-2018 Y880_RS04420 10ee803069acf94e294f802886abb750 469 Gene3D G3DSA:3.40.50.720 1 70 4.1E-10 T 29-03-2018 Y880_RS04420 10ee803069acf94e294f802886abb750 469 Gene3D G3DSA:3.30.9.10 175 323 3.2E-32 T 29-03-2018 Y880_RS25210 24581ec7a8d0038bb40341c79ac17967 224 SUPERFAMILY SSF47781 18 90 1.04E-8 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS25210 24581ec7a8d0038bb40341c79ac17967 224 SUPERFAMILY SSF102712 121 197 1.83E-5 T 29-03-2018 Y880_RS25210 24581ec7a8d0038bb40341c79ac17967 224 Gene3D G3DSA:3.40.140.10 99 224 2.4E-46 T 29-03-2018 Y880_RS25210 24581ec7a8d0038bb40341c79ac17967 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 29-03-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Y880_RS25210 24581ec7a8d0038bb40341c79ac17967 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 7.4E-74 T 29-03-2018 IPR001405 RadC protein Y880_RS25210 24581ec7a8d0038bb40341c79ac17967 224 Pfam PF04002 RadC-like JAB domain 104 222 4.2E-43 T 29-03-2018 IPR025657 RadC-like JAB domain Y880_RS18885 1b3c4d9eaeed71ec6efce6ce4568a226 267 SUPERFAMILY SSF56529 3 267 6.28E-78 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS18885 1b3c4d9eaeed71ec6efce6ce4568a226 267 Gene3D G3DSA:3.90.850.10 1 267 1.2E-47 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS18885 1b3c4d9eaeed71ec6efce6ce4568a226 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 3.1E-140 T 29-03-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 Y880_RS18885 1b3c4d9eaeed71ec6efce6ce4568a226 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 103 265 1.9E-7 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS20360 849e9663e3cf77b15f8bbbb7cd4a6151 357 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 350 1.2E-110 T 29-03-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20360 849e9663e3cf77b15f8bbbb7cd4a6151 357 Gene3D G3DSA:3.40.50.2000 1 171 1.2E-41 T 29-03-2018 Y880_RS20360 849e9663e3cf77b15f8bbbb7cd4a6151 357 Gene3D G3DSA:3.40.50.2000 172 349 1.1E-32 T 29-03-2018 Y880_RS20360 849e9663e3cf77b15f8bbbb7cd4a6151 357 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 355 36.828 T 29-03-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20360 849e9663e3cf77b15f8bbbb7cd4a6151 357 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 141 7.9E-41 T 29-03-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS20360 849e9663e3cf77b15f8bbbb7cd4a6151 357 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 339 9.9E-36 T 29-03-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 Y880_RS20360 849e9663e3cf77b15f8bbbb7cd4a6151 357 SUPERFAMILY SSF53756 4 355 8.38E-116 T 29-03-2018 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 Pfam PF16591 Helical bimodular sensor domain 47 286 2.2E-41 T 29-03-2018 IPR032255 Helical bimodular sensor domain Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 SMART SM01358 37 292 2.7E-35 T 29-03-2018 IPR032255 Helical bimodular sensor domain Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 429 613 1.3E-45 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 512 541 1.1E-21 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 1.1E-21 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 483 510 1.1E-21 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 Pfam PF00672 HAMP domain 314 367 4.4E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 SUPERFAMILY SSF58104 343 647 1.31E-78 T 29-03-2018 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 SMART SM00304 314 370 8.7E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 SMART SM00304 377 423 21.0 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 SMART SM00283 385 646 1.1E-84 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 Gene3D G3DSA:1.10.287.950 312 420 3.1E-9 T 29-03-2018 Y880_RS23920 48e4f0f338caaa973502b1ec7859f24f 647 Gene3D G3DSA:1.10.287.950 421 647 1.9E-55 T 29-03-2018 Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 Gene3D G3DSA:3.40.190.10 88 174 2.2E-17 T 29-03-2018 Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 Pfam PF03466 LysR substrate binding domain 88 291 1.5E-33 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 Gene3D G3DSA:3.40.190.10 175 265 1.0E-17 T 29-03-2018 Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 Gene3D G3DSA:1.10.10.10 1 83 3.9E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 SUPERFAMILY SSF53850 91 291 1.43E-34 T 29-03-2018 Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 SUPERFAMILY SSF46785 1 84 1.32E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.7E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12025 5ee956ff5dc0d20e3c40819e8dcae730 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 3.7E-56 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 Hamap MF_00163 Peptide deformylase [def]. 2 163 32.206 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 PIRSF PIRSF004749 1 168 6.2E-60 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 SUPERFAMILY SSF56420 2 165 2.09E-64 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 Gene3D G3DSA:3.90.45.10 4 168 7.9E-66 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 90 101 4.7E-39 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 102 120 4.7E-39 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 121 150 4.7E-39 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 33 62 4.7E-39 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS26680 847a93a0606dca68a677e2810f62c284 168 Pfam PF01327 Polypeptide deformylase 4 153 6.0E-53 T 29-03-2018 IPR023635 Peptide deformylase Y880_RS27580 9bd0206d665d2fdde32cf5df5f8c1709 790 Gene3D G3DSA:2.170.130.10 51 191 1.5E-23 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS27580 9bd0206d665d2fdde32cf5df5f8c1709 790 Pfam PF00593 TonB dependent receptor 295 788 5.7E-38 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS27580 9bd0206d665d2fdde32cf5df5f8c1709 790 SUPERFAMILY SSF56935 55 790 4.4E-117 T 29-03-2018 Y880_RS27580 9bd0206d665d2fdde32cf5df5f8c1709 790 Gene3D G3DSA:2.40.170.20 192 790 6.0E-74 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS27580 9bd0206d665d2fdde32cf5df5f8c1709 790 Pfam PF07715 TonB-dependent Receptor Plug Domain 75 181 5.9E-14 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS27580 9bd0206d665d2fdde32cf5df5f8c1709 790 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 773 790 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS09790 46cc6c61ff0629a176727c195c562dd2 124 SUPERFAMILY SSF51182 6 111 7.18E-27 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS09790 46cc6c61ff0629a176727c195c562dd2 124 Gene3D G3DSA:2.60.120.10 3 104 4.7E-23 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS09790 46cc6c61ff0629a176727c195c562dd2 124 Pfam PF07883 Cupin domain 42 101 8.2E-13 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS03900 d12b986f1c0b9ce9a38e605547b813be 414 Gene3D G3DSA:3.40.50.300 3 362 3.1E-12 T 29-03-2018 Y880_RS03900 d12b986f1c0b9ce9a38e605547b813be 414 SUPERFAMILY SSF52540 106 216 1.9E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03900 d12b986f1c0b9ce9a38e605547b813be 414 SUPERFAMILY SSF52540 10 66 1.9E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03900 d12b986f1c0b9ce9a38e605547b813be 414 PIRSF PIRSF029407 1 411 2.5E-194 T 29-03-2018 IPR014556 Uncharacterised conserved protein UCP029407 Y880_RS02305 5570bbea4451e21705bcef84ce03e2f2 538 SUPERFAMILY SSF51569 11 274 1.54E-44 T 29-03-2018 Y880_RS02305 5570bbea4451e21705bcef84ce03e2f2 538 Gene3D G3DSA:3.20.20.70 8 262 2.2E-40 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS02305 5570bbea4451e21705bcef84ce03e2f2 538 Pfam PF00682 HMGL-like 11 253 5.8E-24 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y880_RS26130 289cc62501fca510e84963380de3a661 211 ProSitePatterns PS00194 Thioredoxin family active site. 48 66 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS26130 289cc62501fca510e84963380de3a661 211 PIRSF PIRSF001488 1 209 1.2E-77 T 29-03-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL Y880_RS26130 289cc62501fca510e84963380de3a661 211 Pfam PF01323 DSBA-like thioredoxin domain 96 182 4.0E-15 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 Y880_RS26130 289cc62501fca510e84963380de3a661 211 Gene3D G3DSA:3.40.30.10 20 205 3.4E-40 T 29-03-2018 Y880_RS26130 289cc62501fca510e84963380de3a661 211 SUPERFAMILY SSF52833 25 203 4.03E-45 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS24955 cd2957f49a61f5ed47cd774e840ae403 293 Gene3D G3DSA:3.40.190.10 57 291 5.8E-16 T 29-03-2018 Y880_RS24955 cd2957f49a61f5ed47cd774e840ae403 293 SUPERFAMILY SSF53850 64 285 3.48E-31 T 29-03-2018 Y880_RS24955 cd2957f49a61f5ed47cd774e840ae403 293 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 66 285 1.8E-15 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS01950 0a71222c1346c219d53d544ef9a94e17 453 Gene3D G3DSA:1.20.120.330 2 122 0.0013 T 29-03-2018 Y880_RS01950 0a71222c1346c219d53d544ef9a94e17 453 Pfam PF02646 RmuC family 136 432 2.9E-107 T 29-03-2018 IPR003798 DNA recombination RmuC Y880_RS01950 0a71222c1346c219d53d544ef9a94e17 453 Gene3D G3DSA:1.20.5.340 150 297 1.5E-25 T 29-03-2018 Y880_RS04045 e8a9c8b74375d89b6a021c2629da7c3e 242 Gene3D G3DSA:3.60.15.10 3 236 4.1E-31 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS04045 e8a9c8b74375d89b6a021c2629da7c3e 242 SUPERFAMILY SSF56281 15 233 1.54E-42 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS04045 e8a9c8b74375d89b6a021c2629da7c3e 242 Pfam PF00753 Metallo-beta-lactamase superfamily 29 220 5.7E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS04045 e8a9c8b74375d89b6a021c2629da7c3e 242 SMART SM00849 32 220 1.4E-32 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS11575 31cd23004c7882ae03704cac2d1cea2d 205 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 69 204 2.6E-10 T 29-03-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 Y880_RS11575 31cd23004c7882ae03704cac2d1cea2d 205 SUPERFAMILY SSF49503 66 204 1.65E-31 T 29-03-2018 IPR008972 Cupredoxin Y880_RS11575 31cd23004c7882ae03704cac2d1cea2d 205 Gene3D G3DSA:2.60.40.420 65 205 3.6E-25 T 29-03-2018 IPR008972 Cupredoxin Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 SUPERFAMILY SSF158544 108 214 1.7E-25 T 29-03-2018 Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 SUPERFAMILY SSF158544 216 272 2.59E-8 T 29-03-2018 Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 Pfam PF03934 Type II secretion system (T2SS), protein K 30 307 3.0E-87 T 29-03-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 Gene3D G3DSA:1.10.40.60 106 216 1.3E-29 T 29-03-2018 Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 PIRSF PIRSF002786 1 316 5.4E-76 T 29-03-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 SUPERFAMILY SSF54523 275 314 2.04E-17 T 29-03-2018 Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 SUPERFAMILY SSF54523 38 107 2.04E-17 T 29-03-2018 Y880_RS13510 fd647c0586e163738a40b169f61f0887 333 Gene3D G3DSA:1.10.40.60 217 270 9.5E-13 T 29-03-2018 Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 Gene3D G3DSA:2.60.40.420 28 156 1.4E-30 T 29-03-2018 IPR008972 Cupredoxin Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 Gene3D G3DSA:2.60.40.420 157 287 7.3E-15 T 29-03-2018 IPR008972 Cupredoxin Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 SUPERFAMILY SSF49503 160 279 1.16E-18 T 29-03-2018 IPR008972 Cupredoxin Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 Pfam PF07731 Multicopper oxidase 358 458 6.6E-25 T 29-03-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 ProSitePatterns PS00080 Multicopper oxidases signature 2. 440 451 - T 29-03-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 SUPERFAMILY SSF49503 36 158 4.68E-35 T 29-03-2018 IPR008972 Cupredoxin Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 SUPERFAMILY SSF49503 322 457 8.35E-32 T 29-03-2018 IPR008972 Cupredoxin Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 ProSitePatterns PS00079 Multicopper oxidases signature 1. 435 455 - T 29-03-2018 IPR033138 Multicopper oxidases, conserved site Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 Gene3D G3DSA:2.60.40.420 322 458 4.8E-32 T 29-03-2018 IPR008972 Cupredoxin Y880_RS17015 1d248387c1ad8079ef1722d234755c73 463 Pfam PF07732 Multicopper oxidase 57 159 1.7E-34 T 29-03-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 Y880_RS29970 3f160cfc4b96b8c8251ee0b41a820d8e 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 4 262 2.7E-147 T 29-03-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y880_RS29970 3f160cfc4b96b8c8251ee0b41a820d8e 264 SUPERFAMILY SSF56276 113 174 4.71E-25 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Y880_RS29970 3f160cfc4b96b8c8251ee0b41a820d8e 264 SUPERFAMILY SSF56276 44 85 4.71E-25 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Y880_RS29970 3f160cfc4b96b8c8251ee0b41a820d8e 264 Pfam PF02675 S-adenosylmethionine decarboxylase 36 170 1.1E-31 T 29-03-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y880_RS29970 3f160cfc4b96b8c8251ee0b41a820d8e 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 168.207 T 29-03-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y880_RS29970 3f160cfc4b96b8c8251ee0b41a820d8e 264 PIRSF PIRSF001356 1 264 2.7E-150 T 29-03-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y880_RS29970 3f160cfc4b96b8c8251ee0b41a820d8e 264 Gene3D G3DSA:3.60.90.10 33 190 4.8E-47 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Y880_RS11470 32d10d4271edfabc2246cb5fa9c5c2a3 412 Pfam PF07687 Peptidase dimerisation domain 209 309 9.1E-20 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS11470 32d10d4271edfabc2246cb5fa9c5c2a3 412 PIRSF PIRSF037238 29 410 2.1E-102 T 29-03-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase Y880_RS11470 32d10d4271edfabc2246cb5fa9c5c2a3 412 SUPERFAMILY SSF53187 332 409 6.0E-50 T 29-03-2018 Y880_RS11470 32d10d4271edfabc2246cb5fa9c5c2a3 412 SUPERFAMILY SSF53187 31 220 6.0E-50 T 29-03-2018 Y880_RS11470 32d10d4271edfabc2246cb5fa9c5c2a3 412 SUPERFAMILY SSF55031 212 323 2.88E-21 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS11470 32d10d4271edfabc2246cb5fa9c5c2a3 412 Gene3D G3DSA:3.40.630.10 20 307 3.1E-54 T 29-03-2018 Y880_RS11470 32d10d4271edfabc2246cb5fa9c5c2a3 412 Pfam PF01546 Peptidase family M20/M25/M40 107 407 2.0E-31 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 Gene3D G3DSA:1.20.1250.20 215 417 9.0E-22 T 29-03-2018 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 Gene3D G3DSA:1.20.1250.20 17 214 2.8E-31 T 29-03-2018 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 SUPERFAMILY SSF103473 19 416 1.28E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 354 377 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 150 172 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 120 141 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 266 286 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 31 47 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 319 339 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 93 117 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 178 198 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 PRINTS PR01035 Tetracycline resistance protein signature 294 315 9.9E-56 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02535 966456ab9cb8a3129dfb4db463bcf989 422 Pfam PF07690 Major Facilitator Superfamily 25 328 2.8E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.2E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 SUPERFAMILY SSF53850 91 291 9.93E-34 T 29-03-2018 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 Pfam PF03466 LysR substrate binding domain 88 288 2.1E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 Gene3D G3DSA:3.40.190.10 87 175 5.4E-21 T 29-03-2018 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 Gene3D G3DSA:1.10.10.10 1 83 1.3E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 Gene3D G3DSA:3.40.190.10 176 262 5.3E-14 T 29-03-2018 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS29330 5666a5a2055b728413c74514b47d1296 292 SUPERFAMILY SSF46785 1 82 9.62E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02475 ea6b28db2708915219563f8ba5799f4b 435 SMART SM00267 238 411 2.0E-56 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02475 ea6b28db2708915219563f8ba5799f4b 435 SMART SM00304 183 236 9.6E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS02475 ea6b28db2708915219563f8ba5799f4b 435 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 245 408 1.1E-44 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02475 ea6b28db2708915219563f8ba5799f4b 435 Gene3D G3DSA:3.30.70.270 237 413 1.8E-58 T 29-03-2018 Y880_RS02475 ea6b28db2708915219563f8ba5799f4b 435 Pfam PF00990 Diguanylate cyclase, GGDEF domain 249 405 8.0E-47 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02475 ea6b28db2708915219563f8ba5799f4b 435 SUPERFAMILY SSF55073 254 408 1.02E-44 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS02475 ea6b28db2708915219563f8ba5799f4b 435 Pfam PF17152 Periplasmic sensor domain 45 145 5.7E-34 T 29-03-2018 IPR033417 Periplasmic sensor domain CHASE8 Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 Gene3D G3DSA:3.40.50.300 181 364 7.9E-25 T 29-03-2018 Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 PIRSF PIRSF037354 1 531 8.7E-300 T 29-03-2018 IPR017183 Sigma54-dependent transcriptional activator, RtcR GO:0003700|GO:0006355 Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 SMART SM00382 210 356 3.0E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 Gene3D G3DSA:1.10.8.60 365 448 9.3E-14 T 29-03-2018 Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 SUPERFAMILY SSF52540 190 441 3.11E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 Pfam PF06956 Regulator of RNA terminal phosphate cyclase 2 188 2.6E-86 T 29-03-2018 IPR009715 Regulator of RNA terminal phosphate cyclase Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 279 294 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 Gene3D G3DSA:3.40.50.10770 22 160 4.0E-7 T 29-03-2018 Y880_RS21240 c042802456cabb461e7ca7d91c32c0dd 531 Pfam PF00158 Sigma-54 interaction domain 190 358 1.1E-49 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS09850 43b4c94a392258788e526360650591c2 499 Gene3D G3DSA:1.10.510.10 378 442 4.4E-10 T 29-03-2018 Y880_RS09850 43b4c94a392258788e526360650591c2 499 SUPERFAMILY SSF56112 252 486 3.91E-22 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS09850 43b4c94a392258788e526360650591c2 499 Pfam PF12799 Leucine Rich repeats (2 copies) 90 128 1.8E-6 T 29-03-2018 IPR025875 Leucine rich repeat 4 Y880_RS09850 43b4c94a392258788e526360650591c2 499 Gene3D G3DSA:3.30.200.20 253 377 2.7E-8 T 29-03-2018 Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00369 157 179 16.0 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00369 181 201 70.0 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00369 90 111 4.7 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00364 181 197 290.0 T 29-03-2018 Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00364 201 220 360.0 T 29-03-2018 Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00364 156 175 6.9 T 29-03-2018 Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00364 224 243 120.0 T 29-03-2018 Y880_RS09850 43b4c94a392258788e526360650591c2 499 SMART SM00364 88 107 55.0 T 29-03-2018 Y880_RS09850 43b4c94a392258788e526360650591c2 499 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 262 288 - T 29-03-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Y880_RS09850 43b4c94a392258788e526360650591c2 499 Gene3D G3DSA:3.80.10.10 157 252 4.5E-15 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like Y880_RS09850 43b4c94a392258788e526360650591c2 499 SUPERFAMILY SSF52058 63 238 1.77E-30 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like Y880_RS09850 43b4c94a392258788e526360650591c2 499 Gene3D G3DSA:3.80.10.10 56 156 5.1E-17 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like Y880_RS09850 43b4c94a392258788e526360650591c2 499 Pfam PF07714 Protein tyrosine kinase 258 418 1.2E-10 T 29-03-2018 IPR001245 Serine-threonine/tyrosine-protein kinase, catalytic domain GO:0004672|GO:0006468 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 28 402 1.7E-106 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 Pfam PF01566 Natural resistance-associated macrophage protein 50 407 1.2E-131 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 21 434 39.808 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 PRINTS PR00447 Natural resistance-associated macrophage protein signature 214 237 2.0E-57 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 PRINTS PR00447 Natural resistance-associated macrophage protein signature 318 337 2.0E-57 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 PRINTS PR00447 Natural resistance-associated macrophage protein signature 346 363 2.0E-57 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 PRINTS PR00447 Natural resistance-associated macrophage protein signature 109 135 2.0E-57 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 PRINTS PR00447 Natural resistance-associated macrophage protein signature 137 156 2.0E-57 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 PRINTS PR00447 Natural resistance-associated macrophage protein signature 162 183 2.0E-57 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS19955 80d19c5b86af7d42b90e7194524e68a0 435 PRINTS PR00447 Natural resistance-associated macrophage protein signature 378 397 2.0E-57 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS11240 af6ff79161253c9f06e12bcefc316b3f 299 Pfam PF03631 Virulence factor BrkB 24 276 1.7E-70 T 29-03-2018 IPR017039 Virulence factor BrkB Y880_RS11240 af6ff79161253c9f06e12bcefc316b3f 299 PIRSF PIRSF035875 7 296 1.2E-88 T 29-03-2018 IPR017039 Virulence factor BrkB Y880_RS11240 af6ff79161253c9f06e12bcefc316b3f 299 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 16 275 2.0E-44 T 29-03-2018 IPR017039 Virulence factor BrkB Y880_RS05400 170254279b8d540d4e199c2694701bc4 289 Pfam PF09850 Type VI secretion system protein DotU 62 264 1.7E-66 T 29-03-2018 IPR017732 Type IV / VI secretion system, DotU Y880_RS05400 170254279b8d540d4e199c2694701bc4 289 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 61 270 6.2E-73 T 29-03-2018 IPR017732 Type IV / VI secretion system, DotU Y880_RS17920 3bdbe29ff557c35fc1927c83a2006166 263 SMART SM00382 32 213 9.1E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS17920 3bdbe29ff557c35fc1927c83a2006166 263 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS17920 3bdbe29ff557c35fc1927c83a2006166 263 Pfam PF00005 ABC transporter 23 162 2.6E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS17920 3bdbe29ff557c35fc1927c83a2006166 263 SUPERFAMILY SSF52540 7 219 5.05E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17920 3bdbe29ff557c35fc1927c83a2006166 263 Gene3D G3DSA:3.40.50.300 1 241 2.4E-60 T 29-03-2018 Y880_RS23940 763d15a090019a33143b4b6921deae5b 266 SUPERFAMILY SSF53850 1 258 1.71E-67 T 29-03-2018 Y880_RS23940 763d15a090019a33143b4b6921deae5b 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 257 4.4E-57 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23940 763d15a090019a33143b4b6921deae5b 266 SMART SM00079 35 258 1.6E-5 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Y880_RS23940 763d15a090019a33143b4b6921deae5b 266 SMART SM00062 35 259 2.2E-57 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23940 763d15a090019a33143b4b6921deae5b 266 Gene3D G3DSA:3.40.190.10 159 266 7.4E-16 T 29-03-2018 Y880_RS23940 763d15a090019a33143b4b6921deae5b 266 Gene3D G3DSA:3.40.190.10 6 158 1.2E-33 T 29-03-2018 Y880_RS23940 763d15a090019a33143b4b6921deae5b 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 Y880_RS18870 7ad0fd59df6317af2474c72fde7315db 307 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 282 1.7E-138 T 29-03-2018 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase GO:0008687 KEGG: 00350+1.13.11.15 Y880_RS18870 7ad0fd59df6317af2474c72fde7315db 307 SUPERFAMILY SSF53213 12 280 5.1E-50 T 29-03-2018 Y880_RS18870 7ad0fd59df6317af2474c72fde7315db 307 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 280 9.7E-80 T 29-03-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Y880_RS18870 7ad0fd59df6317af2474c72fde7315db 307 Gene3D G3DSA:3.40.830.10 2 276 6.3E-52 T 29-03-2018 Y880_RS24015 e1703d84556384e803ed37f7ffe2640a 266 SUPERFAMILY SSF53187 5 263 2.72E-82 T 29-03-2018 Y880_RS24015 e1703d84556384e803ed37f7ffe2640a 266 Pfam PF05013 N-formylglutamate amidohydrolase 13 230 3.7E-71 T 29-03-2018 IPR007709 N-formylglutamate amidohydrolase Y880_RS24015 e1703d84556384e803ed37f7ffe2640a 266 Gene3D G3DSA:3.40.630.40 2 265 2.4E-80 T 29-03-2018 Y880_RS24015 e1703d84556384e803ed37f7ffe2640a 266 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 262 5.1E-123 T 29-03-2018 IPR010247 N-formylglutamate deformylase Y880_RS25450 d2528b7e815ce705f5156b1b22207391 242 Gene3D G3DSA:1.20.58.220 7 122 2.0E-29 T 29-03-2018 Y880_RS25450 d2528b7e815ce705f5156b1b22207391 242 SUPERFAMILY SSF109755 13 234 9.31E-73 T 29-03-2018 Y880_RS25450 d2528b7e815ce705f5156b1b22207391 242 Gene3D G3DSA:1.20.58.220 127 241 4.7E-30 T 29-03-2018 Y880_RS25450 d2528b7e815ce705f5156b1b22207391 242 Pfam PF01895 PhoU domain 27 113 3.4E-22 T 29-03-2018 IPR026022 PhoU domain Y880_RS25450 d2528b7e815ce705f5156b1b22207391 242 Pfam PF01895 PhoU domain 131 214 1.7E-18 T 29-03-2018 IPR026022 PhoU domain Y880_RS25450 d2528b7e815ce705f5156b1b22207391 242 PIRSF PIRSF003107 8 229 1.5E-80 T 29-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Y880_RS25450 d2528b7e815ce705f5156b1b22207391 242 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 224 5.1E-80 T 29-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Y880_RS20835 ec05d4e6936aae96725f4ec385df6fea 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 314 8.1E-23 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y880_RS20835 ec05d4e6936aae96725f4ec385df6fea 324 Gene3D G3DSA:3.40.50.300 1 315 4.8E-75 T 29-03-2018 Y880_RS20835 ec05d4e6936aae96725f4ec385df6fea 324 SMART SM00382 31 230 3.1E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS20835 ec05d4e6936aae96725f4ec385df6fea 324 SUPERFAMILY SSF52540 3 251 3.99E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20835 ec05d4e6936aae96725f4ec385df6fea 324 Pfam PF00005 ABC transporter 23 180 8.5E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS20835 ec05d4e6936aae96725f4ec385df6fea 324 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS20835 ec05d4e6936aae96725f4ec385df6fea 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 2.3E-16 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y880_RS00660 0fde941044abccac6426b129f76cb7d5 157 Gene3D G3DSA:3.30.530.20 10 148 2.3E-20 T 29-03-2018 IPR023393 START-like domain Y880_RS00660 0fde941044abccac6426b129f76cb7d5 157 SUPERFAMILY SSF55961 10 139 3.47E-22 T 29-03-2018 Y880_RS00660 0fde941044abccac6426b129f76cb7d5 157 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 18 139 1.7E-15 T 29-03-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 Y880_RS21605 1033571216109fce47f5ef175da4b66c 427 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 327 347 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS21605 1033571216109fce47f5ef175da4b66c 427 Pfam PF00860 Permease family 12 378 1.1E-92 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS21605 1033571216109fce47f5ef175da4b66c 427 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 9 407 9.2E-111 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 Gene3D G3DSA:1.10.490.10 1 162 3.5E-41 T 29-03-2018 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 SUPERFAMILY SSF63380 151 253 1.02E-30 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 Pfam PF00970 Oxidoreductase FAD-binding domain 159 253 2.6E-12 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 Pfam PF00175 Oxidoreductase NAD-binding domain 264 366 9.2E-10 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 SUPERFAMILY SSF52343 255 388 2.62E-32 T 29-03-2018 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 Gene3D G3DSA:3.40.50.80 254 392 7.0E-23 T 29-03-2018 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 353 361 6.8E-9 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 6.8E-9 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 186 198 6.8E-9 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 248 257 6.8E-9 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 Pfam PF00042 Globin 6 103 9.0E-9 T 29-03-2018 IPR000971 Globin GO:0020037 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 Gene3D G3DSA:2.40.30.10 163 253 6.2E-28 T 29-03-2018 Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 SUPERFAMILY SSF46458 1 142 5.65E-38 T 29-03-2018 IPR009050 Globin-like Y880_RS10750 4dc510d7d224cafce6093287ddfa1e1a 393 Hamap MF_01252 Flavohemoprotein [hmp]. 1 391 53.56 T 29-03-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 Y880_RS04300 cfdf487473aa21a5cb6e90575e666b26 228 Pfam PF00043 Glutathione S-transferase, C-terminal domain 104 193 2.4E-13 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS04300 cfdf487473aa21a5cb6e90575e666b26 228 Pfam PF13417 Glutathione S-transferase, N-terminal domain 19 76 1.9E-6 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS04300 cfdf487473aa21a5cb6e90575e666b26 228 SUPERFAMILY SSF52833 4 77 7.78E-12 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS04300 cfdf487473aa21a5cb6e90575e666b26 228 SUPERFAMILY SSF47616 85 202 6.26E-20 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS04300 cfdf487473aa21a5cb6e90575e666b26 228 Gene3D G3DSA:3.40.30.10 1 78 7.1E-11 T 29-03-2018 Y880_RS04300 cfdf487473aa21a5cb6e90575e666b26 228 Gene3D G3DSA:1.20.1050.10 84 210 2.2E-19 T 29-03-2018 Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 Gene3D G3DSA:3.40.50.720 155 335 3.9E-36 T 29-03-2018 Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 136 3.2E-33 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 SUPERFAMILY SSF50129 312 340 2.74E-58 T 29-03-2018 IPR011032 GroES-like Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 SUPERFAMILY SSF50129 2 148 2.74E-58 T 29-03-2018 IPR011032 GroES-like Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 Gene3D G3DSA:3.90.180.10 4 154 7.5E-56 T 29-03-2018 Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 SMART SM00829 16 340 7.7E-6 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 SUPERFAMILY SSF51735 145 310 1.07E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 66 80 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y880_RS25790 6e80ac6f02efd59ea9ec0c886bce5f49 342 Pfam PF00107 Zinc-binding dehydrogenase 181 304 1.8E-28 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS25635 83c41cbba3fb8e22fe8c772c14b9ca6b 176 Gene3D G3DSA:3.30.1380.20 22 176 7.4E-27 T 29-03-2018 Y880_RS25635 83c41cbba3fb8e22fe8c772c14b9ca6b 176 SMART SM00989 107 175 3.7E-4 T 29-03-2018 IPR004096 4-vinyl reductase, 4VR Y880_RS25635 83c41cbba3fb8e22fe8c772c14b9ca6b 176 SUPERFAMILY SSF111126 6 144 2.98E-17 T 29-03-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain Y880_RS24440 1d96b26cc07a0cd96cb1ed318839745a 482 PIRSF PIRSF006060 1 480 2.6E-51 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS24440 1d96b26cc07a0cd96cb1ed318839745a 482 Pfam PF13520 Amino acid permease 13 455 1.2E-76 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS24440 1d96b26cc07a0cd96cb1ed318839745a 482 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 7 481 1.0E-217 T 29-03-2018 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 Y880_RS24440 1d96b26cc07a0cd96cb1ed318839745a 482 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 482 2.5E-206 T 29-03-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 Y880_RS28790 53798a33c4e62ab9b5413a6d973770e3 147 SUPERFAMILY SSF46785 6 138 1.03E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28790 53798a33c4e62ab9b5413a6d973770e3 147 Pfam PF01047 MarR family 35 92 9.1E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS28790 53798a33c4e62ab9b5413a6d973770e3 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 3.3E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS28790 53798a33c4e62ab9b5413a6d973770e3 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 3.3E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS28790 53798a33c4e62ab9b5413a6d973770e3 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 3.3E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS28790 53798a33c4e62ab9b5413a6d973770e3 147 SMART SM00347 28 128 8.8E-31 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS28790 53798a33c4e62ab9b5413a6d973770e3 147 Gene3D G3DSA:1.10.10.10 9 142 4.0E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15380 6816f664ae96a7cb44c3114f55ef2358 221 Gene3D G3DSA:1.10.10.10 100 171 7.9E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15380 6816f664ae96a7cb44c3114f55ef2358 221 Hamap MF_01584 UPF0502 protein YceH [yceH]. 14 219 30.28 T 29-03-2018 IPR007432 Protein of unknown function DUF480 Y880_RS15380 6816f664ae96a7cb44c3114f55ef2358 221 SUPERFAMILY SSF46785 13 90 1.34E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15380 6816f664ae96a7cb44c3114f55ef2358 221 Pfam PF04337 Protein of unknown function, DUF480 14 158 2.8E-55 T 29-03-2018 IPR007432 Protein of unknown function DUF480 Y880_RS15380 6816f664ae96a7cb44c3114f55ef2358 221 Gene3D G3DSA:1.10.10.10 11 94 1.9E-36 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15380 6816f664ae96a7cb44c3114f55ef2358 221 SUPERFAMILY SSF46785 95 174 2.68E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12155 c526b668800e22b18baa13341713a4d7 323 SUPERFAMILY SSF53850 90 294 8.69E-41 T 29-03-2018 Y880_RS12155 c526b668800e22b18baa13341713a4d7 323 Gene3D G3DSA:3.40.190.10 179 264 6.5E-25 T 29-03-2018 Y880_RS12155 c526b668800e22b18baa13341713a4d7 323 SUPERFAMILY SSF46785 6 111 3.8E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12155 c526b668800e22b18baa13341713a4d7 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.1E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12155 c526b668800e22b18baa13341713a4d7 323 Gene3D G3DSA:1.10.10.10 1 93 3.8E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12155 c526b668800e22b18baa13341713a4d7 323 Gene3D G3DSA:3.40.190.10 94 178 4.3E-12 T 29-03-2018 Y880_RS12155 c526b668800e22b18baa13341713a4d7 323 Pfam PF03466 LysR substrate binding domain 89 293 2.6E-42 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 321 347 2.4E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 124 142 2.4E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 289 316 2.4E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 84 102 2.4E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 21 44 2.4E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 105 122 2.4E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 Gene3D G3DSA:2.40.180.10 1 358 3.3E-159 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 334 342 - T 29-03-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 Pfam PF00199 Catalase 8 390 5.7E-187 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 ProSitePatterns PS00438 Catalase proximal active site signature. 44 60 - T 29-03-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 SMART SM01060 8 393 2.5E-283 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 SUPERFAMILY SSF56634 3 481 3.79E-211 T 29-03-2018 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 Pfam PF06628 Catalase-related immune-responsive 418 477 1.1E-20 T 29-03-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS19440 07dd5d23b964a2d7151e58d18875ad23 482 PIRSF PIRSF038928 1 482 6.5E-222 T 29-03-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 271 2.7E-76 T 29-03-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 Gene3D G3DSA:3.40.50.10860 1 110 5.7E-37 T 29-03-2018 Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 87 5.1E-24 T 29-03-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 270 31.426 T 29-03-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 Gene3D G3DSA:3.40.50.720 111 274 1.7E-27 T 29-03-2018 Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 SUPERFAMILY SSF53223 1 100 1.09E-30 T 29-03-2018 Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 116 165 4.4E-7 T 29-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Y880_RS26710 aa0ec858a934808afe2a29fe350fd450 274 SUPERFAMILY SSF51735 101 270 1.25E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 SUPERFAMILY SSF64518 1 394 9.68E-107 T 29-03-2018 Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 PRINTS PR00207 Flagellin signature 111 134 1.2E-25 T 29-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 PRINTS PR00207 Flagellin signature 37 54 1.2E-25 T 29-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 PRINTS PR00207 Flagellin signature 76 95 1.2E-25 T 29-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 Pfam PF00700 Bacterial flagellin C-terminal helical region 310 393 9.2E-31 T 29-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 Gene3D G3DSA:1.20.1330.10 224 366 5.3E-26 T 29-03-2018 Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 Gene3D G3DSA:1.20.1330.10 40 223 2.8E-46 T 29-03-2018 Y880_RS02315 776edf76dc83542328f5d9fa490e0024 394 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.6E-43 T 29-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y880_RS13730 06544272e209b2b59b2b5b30fa86dd74 499 Pfam PF07690 Major Facilitator Superfamily 5 398 1.1E-44 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS13730 06544272e209b2b59b2b5b30fa86dd74 499 Gene3D G3DSA:1.20.1250.20 1 182 3.9E-24 T 29-03-2018 Y880_RS13730 06544272e209b2b59b2b5b30fa86dd74 499 Gene3D G3DSA:1.20.1250.20 241 489 2.5E-22 T 29-03-2018 Y880_RS13730 06544272e209b2b59b2b5b30fa86dd74 499 SUPERFAMILY SSF103473 237 408 1.7E-55 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS13730 06544272e209b2b59b2b5b30fa86dd74 499 SUPERFAMILY SSF103473 2 180 1.7E-55 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS13730 06544272e209b2b59b2b5b30fa86dd74 499 SUPERFAMILY SSF103473 460 485 1.7E-55 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS13730 06544272e209b2b59b2b5b30fa86dd74 499 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 2 480 1.2E-121 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 Y880_RS03605 f507412d903035669dae64a986e2522f 244 Pfam PF00005 ABC transporter 17 165 1.6E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS03605 f507412d903035669dae64a986e2522f 244 SUPERFAMILY SSF52540 1 226 3.59E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03605 f507412d903035669dae64a986e2522f 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS03605 f507412d903035669dae64a986e2522f 244 Gene3D G3DSA:3.40.50.300 1 240 1.7E-69 T 29-03-2018 Y880_RS03605 f507412d903035669dae64a986e2522f 244 SMART SM00382 26 213 4.8E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS03605 f507412d903035669dae64a986e2522f 244 PIRSF PIRSF039085 1 243 2.3E-102 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0061 T 29-03-2018 Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 SUPERFAMILY SSF51735 5 229 1.16E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 Gene3D G3DSA:3.40.50.720 6 265 2.4E-50 T 29-03-2018 Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 Pfam PF00106 short chain dehydrogenase 9 197 2.5E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS22670 1e85a1589de0b065fcb8a9e33a62ebe0 265 PIRSF PIRSF000126 1 263 4.5E-73 T 29-03-2018 Y880_RS29915 2f54889ec336cf43ef21f698c151c819 1220 Pfam PF13550 Putative phage tail protein 339 505 6.3E-26 T 29-03-2018 IPR032876 Tip attachment protein J Y880_RS29915 2f54889ec336cf43ef21f698c151c819 1220 Gene3D G3DSA:2.60.40.10 620 822 1.6E-13 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS29915 2f54889ec336cf43ef21f698c151c819 1220 SUPERFAMILY SSF49265 622 710 1.08E-5 T 29-03-2018 IPR003961 Fibronectin type III GO:0005515 Y880_RS29915 2f54889ec336cf43ef21f698c151c819 1220 Gene3D G3DSA:2.60.40.10 101 595 0.21 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS29915 2f54889ec336cf43ef21f698c151c819 1220 Gene3D G3DSA:1.20.5.50 970 1086 0.0014 T 29-03-2018 Y880_RS29915 2f54889ec336cf43ef21f698c151c819 1220 Pfam PF09327 Domain of unknown function (DUF1983) 1066 1144 2.2E-22 T 29-03-2018 IPR015406 Domain of unknown function DUF1983 Y880_RS29915 2f54889ec336cf43ef21f698c151c819 1220 Gene3D G3DSA:1.20.5.730 904 961 0.14 T 29-03-2018 Y880_RS27325 95c6867c4467277e656d35e50d1ab1a5 298 Gene3D G3DSA:3.40.50.300 6 277 4.3E-102 T 29-03-2018 Y880_RS27325 95c6867c4467277e656d35e50d1ab1a5 298 PIRSF PIRSF028756 4 287 1.8E-130 T 29-03-2018 IPR016898 Polyphosphate kinase 2 Y880_RS27325 95c6867c4467277e656d35e50d1ab1a5 298 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 31 257 5.6E-112 T 29-03-2018 IPR022488 Polyphosphate kinase-2-related Y880_RS27325 95c6867c4467277e656d35e50d1ab1a5 298 SUPERFAMILY SSF52540 62 249 1.25E-31 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS27325 95c6867c4467277e656d35e50d1ab1a5 298 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 30 257 3.7E-118 T 29-03-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 Y880_RS10405 15acffe4cdb39a1b10578c0daacc2b95 314 Gene3D G3DSA:3.40.190.10 23 131 1.1E-12 T 29-03-2018 Y880_RS10405 15acffe4cdb39a1b10578c0daacc2b95 314 Gene3D G3DSA:3.40.190.10 132 314 8.0E-32 T 29-03-2018 Y880_RS10405 15acffe4cdb39a1b10578c0daacc2b95 314 SUPERFAMILY SSF53850 33 256 8.65E-43 T 29-03-2018 Y880_RS10405 15acffe4cdb39a1b10578c0daacc2b95 314 Pfam PF09084 NMT1/THI5 like 66 242 8.6E-17 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS10405 15acffe4cdb39a1b10578c0daacc2b95 314 SMART SM00062 28 241 0.0017 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS10405 15acffe4cdb39a1b10578c0daacc2b95 314 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 30 309 1.6E-65 T 29-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y880_RS10400 3531513b7f54c166575eea623ed783c5 360 Pfam PF00296 Luciferase-like monooxygenase 12 322 1.2E-76 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS10400 3531513b7f54c166575eea623ed783c5 360 SUPERFAMILY SSF51679 12 350 2.22E-80 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS10400 3531513b7f54c166575eea623ed783c5 360 Gene3D G3DSA:3.20.20.30 1 359 3.6E-76 T 29-03-2018 Y880_RS02100 e681367b29ecc68b26182191e54fc851 301 Pfam PF00892 EamA-like transporter family 9 139 1.5E-26 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS02100 e681367b29ecc68b26182191e54fc851 301 Pfam PF00892 EamA-like transporter family 153 285 6.0E-26 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS02100 e681367b29ecc68b26182191e54fc851 301 SUPERFAMILY SSF103481 190 291 5.49E-15 T 29-03-2018 Y880_RS02100 e681367b29ecc68b26182191e54fc851 301 SUPERFAMILY SSF103481 42 142 6.41E-18 T 29-03-2018 Y880_RS19190 bc2e83b8ee9a32a063f58525300ba4b4 155 Gene3D G3DSA:3.10.180.10 43 155 2.3E-12 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS19190 bc2e83b8ee9a32a063f58525300ba4b4 155 SUPERFAMILY SSF54593 36 152 2.95E-14 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 Pfam PF00717 Peptidase S24-like 85 168 9.9E-22 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 64 266 2.0E-49 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 ProSitePatterns PS00501 Signal peptidases I serine active site. 88 95 - T 29-03-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 Gene3D G3DSA:2.10.109.10 75 279 4.7E-56 T 29-03-2018 Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 216 235 5.4E-26 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 143 155 5.4E-26 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 79 95 5.4E-26 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 ProSitePatterns PS00760 Signal peptidases I lysine active site. 145 157 - T 29-03-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 SUPERFAMILY SSF51306 77 271 1.44E-64 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS00455 447f21352030e18c6febd8227e4c89cf 284 ProSitePatterns PS00761 Signal peptidases I signature 3. 221 234 - T 29-03-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 SMART SM00862 145 220 6.0E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 Gene3D G3DSA:3.40.50.2300 1 119 2.0E-34 T 29-03-2018 Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 SMART SM00448 1 111 8.1E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 SUPERFAMILY SSF52172 1 121 6.12E-38 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 220 1.2E-101 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 220 2.9E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 SUPERFAMILY SSF46894 124 221 2.04E-28 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 Gene3D G3DSA:1.10.10.10 120 224 1.2E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09965 6c40741fde839c074d3fcc96b1b3871a 224 Pfam PF00072 Response regulator receiver domain 3 112 2.1E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16475 b910869a8ca3406bf885b7fa240ce4a2 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 5 111 1.1E-30 T 29-03-2018 IPR006504 Transcriptional regulator Spx/MgsR Y880_RS16475 b910869a8ca3406bf885b7fa240ce4a2 115 Pfam PF03960 ArsC family 6 112 9.4E-19 T 29-03-2018 IPR006660 Arsenate reductase-like Y880_RS16475 b910869a8ca3406bf885b7fa240ce4a2 115 SUPERFAMILY SSF52833 3 114 3.42E-35 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS16475 b910869a8ca3406bf885b7fa240ce4a2 115 Gene3D G3DSA:3.40.30.10 2 115 6.7E-37 T 29-03-2018 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 Gene3D G3DSA:1.20.58.130 184 253 0.0068 T 29-03-2018 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 272 293 7.1E-15 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 305 329 7.1E-15 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 7.1E-15 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 401 418 7.1E-15 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 Gene3D G3DSA:2.40.50.100 46 97 7.4E-6 T 29-03-2018 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 Gene3D G3DSA:1.20.5.1000 98 167 2.4E-4 T 29-03-2018 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 Gene3D G3DSA:2.40.50.100 254 383 2.1E-4 T 29-03-2018 Y880_RS18965 3ffd54760da913ca76bd231f7b706bf4 418 Pfam PF13437 HlyD family secretion protein 261 389 1.3E-13 T 29-03-2018 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 SUPERFAMILY SSF46626 176 289 1.41E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 Pfam PF00034 Cytochrome c 31 129 1.1E-6 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 PRINTS PR00605 Class IC cytochrome C signature 308 319 1.3E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 PRINTS PR00605 Class IC cytochrome C signature 361 383 1.3E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 SUPERFAMILY SSF46626 17 152 3.81E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 SUPERFAMILY SSF46626 300 404 3.4E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 PIRSF PIRSF000018 1 415 2.1E-147 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 300 383 1.2E-9 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 Gene3D G3DSA:1.10.760.10 292 415 4.7E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 Gene3D G3DSA:1.10.760.10 9 144 4.0E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21450 39d68cc9a03e942e751d69a777ff42b1 415 Gene3D G3DSA:1.10.760.10 161 291 5.4E-12 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25825 d37efc220971002e33bf6f471314c98b 224 Gene3D G3DSA:3.40.630.30 5 197 2.5E-28 T 29-03-2018 Y880_RS25825 d37efc220971002e33bf6f471314c98b 224 Pfam PF13302 Acetyltransferase (GNAT) domain 47 165 2.0E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS25825 d37efc220971002e33bf6f471314c98b 224 SUPERFAMILY SSF55729 16 189 7.09E-36 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS07135 0ea028f90a9dc52de1a84ab4bd094fa9 92 Pfam PF00639 PPIC-type PPIASE domain 12 88 3.2E-19 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 Y880_RS07135 0ea028f90a9dc52de1a84ab4bd094fa9 92 SUPERFAMILY SSF54534 4 88 9.81E-27 T 29-03-2018 Y880_RS07135 0ea028f90a9dc52de1a84ab4bd094fa9 92 Gene3D G3DSA:3.10.50.40 3 91 5.3E-29 T 29-03-2018 Y880_RS07135 0ea028f90a9dc52de1a84ab4bd094fa9 92 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 29-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y880_RS27730 d35aff16f2c5c501e61c837a28b758e6 283 Pfam PF01144 Coenzyme A transferase 6 216 1.9E-24 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS27730 d35aff16f2c5c501e61c837a28b758e6 283 SMART SM00882 4 224 9.1E-47 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS27730 d35aff16f2c5c501e61c837a28b758e6 283 SUPERFAMILY SSF100950 4 277 8.37E-79 T 29-03-2018 Y880_RS27730 d35aff16f2c5c501e61c837a28b758e6 283 Gene3D G3DSA:3.40.1080.10 2 283 1.8E-53 T 29-03-2018 Y880_RS09915 b06df9ff89e725a8e17ba1cd3da1d7ea 163 SUPERFAMILY SSF54427 1 163 6.13E-51 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS09915 b06df9ff89e725a8e17ba1cd3da1d7ea 163 Pfam PF00866 Ring hydroxylating beta subunit 15 155 7.7E-48 T 29-03-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 Y880_RS09915 b06df9ff89e725a8e17ba1cd3da1d7ea 163 Gene3D G3DSA:3.10.450.50 2 163 3.8E-28 T 29-03-2018 Y880_RS09915 b06df9ff89e725a8e17ba1cd3da1d7ea 163 TIGRFAM TIGR03231 anthran_1_2_B: anthranilate 1,2-dioxygenase, small subunit 9 163 7.1E-95 T 29-03-2018 IPR017640 Anthranilate 1,2-dioxygenase, small subunit KEGG: 00627+1.14.12.1|MetaCyc: PWY-2421|MetaCyc: PWY-5648|MetaCyc: PWY-6079 Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 237 6.3E-115 T 29-03-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 Gene3D G3DSA:3.30.230.70 2 239 1.5E-64 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 Pfam PF01138 3' exoribonuclease family, domain 1 11 141 3.6E-27 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 ProSitePatterns PS01277 Ribonuclease PH signature. 117 129 - T 29-03-2018 IPR018336 Ribonuclease PH, conserved site Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 Hamap MF_00564 Ribonuclease PH [rph]. 2 238 49.641 T 29-03-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 Pfam PF03725 3' exoribonuclease family, domain 2 159 224 5.1E-10 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 SUPERFAMILY SSF54211 3 182 6.07E-47 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS25290 27586bd646c37c7307d4786e0b8af06e 239 SUPERFAMILY SSF55666 153 238 7.98E-27 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y880_RS29625 0e245812be3bfe73efa84c69ed72d3ba 180 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 6 130 1.9E-23 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS29625 0e245812be3bfe73efa84c69ed72d3ba 180 Gene3D G3DSA:3.30.70.560 3 155 4.4E-36 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS29625 0e245812be3bfe73efa84c69ed72d3ba 180 SUPERFAMILY SSF55083 5 152 4.05E-38 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS29625 0e245812be3bfe73efa84c69ed72d3ba 180 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 7 130 2.1E-22 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS16450 2a65c7b592d35c4925803bcb88ca5d31 402 Pfam PF00155 Aminotransferase class I and II 32 395 5.7E-44 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS16450 2a65c7b592d35c4925803bcb88ca5d31 402 Gene3D G3DSA:3.90.1150.10 280 400 5.0E-22 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS16450 2a65c7b592d35c4925803bcb88ca5d31 402 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 398 2.4E-202 T 29-03-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 Y880_RS16450 2a65c7b592d35c4925803bcb88ca5d31 402 SUPERFAMILY SSF53383 2 400 9.08E-89 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS16450 2a65c7b592d35c4925803bcb88ca5d31 402 Gene3D G3DSA:3.40.640.10 43 279 1.4E-41 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS14290 327567fab987e6c60e2444af0424acdc 265 Gene3D G3DSA:1.10.3720.10 9 264 4.1E-41 T 29-03-2018 Y880_RS14290 327567fab987e6c60e2444af0424acdc 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 262 1.3E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS14290 327567fab987e6c60e2444af0424acdc 265 SUPERFAMILY SSF161098 6 263 8.5E-43 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS23640 17ffc402111c0cb6b33ceba7f4269970 215 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 49 210 36.888 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y880_RS23640 17ffc402111c0cb6b33ceba7f4269970 215 Pfam PF01625 Peptide methionine sulfoxide reductase 52 204 3.5E-64 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y880_RS23640 17ffc402111c0cb6b33ceba7f4269970 215 SUPERFAMILY SSF55068 10 213 1.44E-79 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y880_RS23640 17ffc402111c0cb6b33ceba7f4269970 215 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 51 204 3.8E-65 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y880_RS23640 17ffc402111c0cb6b33ceba7f4269970 215 Gene3D G3DSA:3.30.1060.10 31 209 9.5E-76 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y880_RS01830 6a1a6553f05a7de6fbefbe7e53c5fc1b 396 Pfam PF06804 NlpB/DapX lipoprotein 36 374 4.5E-22 T 29-03-2018 IPR010653 NlpB/DapX lipoprotein Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 SUPERFAMILY SSF53850 85 289 7.6E-34 T 29-03-2018 Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 Gene3D G3DSA:3.40.190.10 178 259 7.5E-18 T 29-03-2018 Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 SUPERFAMILY SSF46785 4 86 5.3E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.1E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 Pfam PF03466 LysR substrate binding domain 92 289 1.8E-34 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 Gene3D G3DSA:3.40.190.10 94 177 1.2E-16 T 29-03-2018 Y880_RS18795 fdaf3bd3049fd3950fd8ed36189dd56b 296 Gene3D G3DSA:1.10.10.10 1 89 6.0E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19205 c04fe46b304507ae9288f4b269335aaa 439 SUPERFAMILY SSF51905 366 401 6.04E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19205 c04fe46b304507ae9288f4b269335aaa 439 SUPERFAMILY SSF51905 37 258 6.04E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19205 c04fe46b304507ae9288f4b269335aaa 439 Pfam PF01266 FAD dependent oxidoreductase 37 393 4.0E-37 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS19205 c04fe46b304507ae9288f4b269335aaa 439 Gene3D G3DSA:3.50.50.60 27 412 3.8E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS14345 683c747fa89c692545648b408245bde4 253 SUPERFAMILY SSF54534 30 228 1.79E-56 T 29-03-2018 Y880_RS14345 683c747fa89c692545648b408245bde4 253 Gene3D G3DSA:1.10.287.460 19 111 2.7E-26 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y880_RS14345 683c747fa89c692545648b408245bde4 253 Gene3D G3DSA:3.10.50.40 112 229 5.4E-43 T 29-03-2018 Y880_RS14345 683c747fa89c692545648b408245bde4 253 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 137 225 9.7E-26 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y880_RS14345 683c747fa89c692545648b408245bde4 253 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 130 1.7E-31 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y880_RS15455 02c683631102fc17d3f92ce4eeb2877d 455 Gene3D G3DSA:1.20.1250.20 241 455 8.9E-28 T 29-03-2018 Y880_RS15455 02c683631102fc17d3f92ce4eeb2877d 455 Gene3D G3DSA:1.20.1250.20 9 214 9.0E-45 T 29-03-2018 Y880_RS15455 02c683631102fc17d3f92ce4eeb2877d 455 SUPERFAMILY SSF103473 10 452 1.31E-92 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS15455 02c683631102fc17d3f92ce4eeb2877d 455 Pfam PF00083 Sugar (and other) transporter 56 453 4.7E-49 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS15455 02c683631102fc17d3f92ce4eeb2877d 455 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS15455 02c683631102fc17d3f92ce4eeb2877d 455 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 Gene3D G3DSA:1.10.10.10 1 81 2.8E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.1E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 Pfam PF03466 LysR substrate binding domain 88 292 8.0E-41 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 Gene3D G3DSA:3.40.190.10 181 271 4.7E-25 T 29-03-2018 Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 SUPERFAMILY SSF53850 88 295 1.94E-36 T 29-03-2018 Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 SUPERFAMILY SSF46785 2 87 2.51E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.6E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.6E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.6E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24690 14958af373bbf4e5966f2661a59f8ba4 304 Gene3D G3DSA:3.40.190.10 89 180 2.4E-22 T 29-03-2018 Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 7.2E-43 T 29-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 SMART SM01003 4 136 7.4E-69 T 29-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 Gene3D G3DSA:3.40.50.720 193 371 3.6E-41 T 29-03-2018 Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 Gene3D G3DSA:3.40.50.720 1 192 5.8E-46 T 29-03-2018 Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 SUPERFAMILY SSF51735 136 317 2.69E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 SUPERFAMILY SSF52283 2 167 4.0E-51 T 29-03-2018 Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 SMART SM01002 145 314 7.9E-85 T 29-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Y880_RS27595 ec66f37672e7e745397fd116ae8a6e35 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 369 1.9E-73 T 29-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Y880_RS29115 55c1d33ebcfbf7fbe19738fcaba4d231 298 Pfam PF00892 EamA-like transporter family 8 141 3.3E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS29115 55c1d33ebcfbf7fbe19738fcaba4d231 298 SUPERFAMILY SSF103481 213 286 2.62E-7 T 29-03-2018 Y880_RS29115 55c1d33ebcfbf7fbe19738fcaba4d231 298 TIGRFAM TIGR00688 rarD: protein RarD 8 260 1.9E-74 T 29-03-2018 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 Y880_RS29115 55c1d33ebcfbf7fbe19738fcaba4d231 298 SUPERFAMILY SSF103481 47 145 4.05E-14 T 29-03-2018 Y880_RS00610 def5c9dc9c6f5db2764bc96fb0e1e327 216 Gene3D G3DSA:3.40.50.150 20 213 7.1E-25 T 29-03-2018 Y880_RS00610 def5c9dc9c6f5db2764bc96fb0e1e327 216 Pfam PF13489 Methyltransferase domain 41 195 9.7E-20 T 29-03-2018 Y880_RS00610 def5c9dc9c6f5db2764bc96fb0e1e327 216 SUPERFAMILY SSF53335 44 212 1.52E-31 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS09035 80d562ce919324cb4effd05b01efe276 436 SUPERFAMILY SSF53850 25 408 4.4E-73 T 29-03-2018 Y880_RS09035 80d562ce919324cb4effd05b01efe276 436 Gene3D G3DSA:3.40.190.10 4 154 6.0E-19 T 29-03-2018 Y880_RS09035 80d562ce919324cb4effd05b01efe276 436 Gene3D G3DSA:3.40.190.10 155 375 3.4E-38 T 29-03-2018 Y880_RS09035 80d562ce919324cb4effd05b01efe276 436 Pfam PF01547 Bacterial extracellular solute-binding protein 46 327 3.3E-47 T 29-03-2018 IPR006059 Solute-binding family 1 GO:0006810 Y880_RS05415 a8debb741a45605958b9eceafcba6ac3 329 Gene3D G3DSA:1.10.510.10 125 317 8.4E-43 T 29-03-2018 Y880_RS05415 a8debb741a45605958b9eceafcba6ac3 329 Pfam PF00069 Protein kinase domain 51 280 7.8E-38 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y880_RS05415 a8debb741a45605958b9eceafcba6ac3 329 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 179 191 - T 29-03-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Y880_RS05415 a8debb741a45605958b9eceafcba6ac3 329 SMART SM00220 51 323 1.5E-42 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y880_RS05415 a8debb741a45605958b9eceafcba6ac3 329 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 57 86 - T 29-03-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Y880_RS05415 a8debb741a45605958b9eceafcba6ac3 329 SUPERFAMILY SSF56112 39 307 1.84E-59 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS05415 a8debb741a45605958b9eceafcba6ac3 329 Gene3D G3DSA:3.30.200.20 43 124 2.2E-16 T 29-03-2018 Y880_RS26650 e5b6df45971b0fd34e6e7357ceb394f6 217 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 14 202 5.9E-56 T 29-03-2018 IPR003744 Queuosine precursor transporter Y880_RS26650 e5b6df45971b0fd34e6e7357ceb394f6 217 Pfam PF02592 Putative vitamin uptake transporter 43 199 2.9E-35 T 29-03-2018 IPR003744 Queuosine precursor transporter Y880_RS16555 d87c58043c0a35be963a147053aeb70f 261 SUPERFAMILY SSF53335 14 256 6.47E-75 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS16555 d87c58043c0a35be963a147053aeb70f 261 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 9 256 40.14 T 29-03-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 Y880_RS16555 d87c58043c0a35be963a147053aeb70f 261 Pfam PF04445 Putative SAM-dependent methyltransferase 33 254 1.2E-92 T 29-03-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 Y880_RS16555 d87c58043c0a35be963a147053aeb70f 261 Gene3D G3DSA:3.40.50.150 65 260 5.1E-41 T 29-03-2018 Y880_RS10250 8d41dce0f95ebf0d6b89445344ba1705 535 Pfam PF00672 HAMP domain 206 255 2.0E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10250 8d41dce0f95ebf0d6b89445344ba1705 535 SUPERFAMILY SSF58104 226 535 1.83E-76 T 29-03-2018 Y880_RS10250 8d41dce0f95ebf0d6b89445344ba1705 535 SMART SM00283 273 534 4.4E-80 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10250 8d41dce0f95ebf0d6b89445344ba1705 535 Gene3D G3DSA:1.10.287.950 313 535 7.4E-54 T 29-03-2018 Y880_RS10250 8d41dce0f95ebf0d6b89445344ba1705 535 Gene3D G3DSA:1.10.287.950 74 312 5.0E-10 T 29-03-2018 Y880_RS10250 8d41dce0f95ebf0d6b89445344ba1705 535 SMART SM00304 206 258 1.1E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS10250 8d41dce0f95ebf0d6b89445344ba1705 535 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 500 2.8E-47 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS15820 00ce29ceed5634a4894ee576c5a57a0d 494 SUPERFAMILY SSF53448 286 363 8.44E-12 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS15820 00ce29ceed5634a4894ee576c5a57a0d 494 SUPERFAMILY SSF53448 151 255 8.44E-12 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS15820 00ce29ceed5634a4894ee576c5a57a0d 494 Pfam PF13641 Glycosyltransferase like family 2 87 343 6.4E-54 T 29-03-2018 Y880_RS15820 00ce29ceed5634a4894ee576c5a57a0d 494 ProDom PD339107 ALGINATE ALG8 BIOSYNTHESIS TRANSFERASE TRANSMEMBRANE MEMBRANE 2.4.1.- GLYCOSYL GLYCOSYLTRANSFERASE PRECURSOR 2 494 0.0 T 29-03-2018 Y880_RS15820 00ce29ceed5634a4894ee576c5a57a0d 494 Gene3D G3DSA:3.90.550.10 76 360 3.8E-11 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS24485 681037401268439e26a8593d5cc73b06 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24485 681037401268439e26a8593d5cc73b06 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24485 681037401268439e26a8593d5cc73b06 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24485 681037401268439e26a8593d5cc73b06 306 Gene3D G3DSA:1.10.10.10 1 87 7.9E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24485 681037401268439e26a8593d5cc73b06 306 Pfam PF03466 LysR substrate binding domain 87 289 2.7E-33 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS24485 681037401268439e26a8593d5cc73b06 306 Gene3D G3DSA:3.40.190.10 88 175 1.1E-11 T 29-03-2018 Y880_RS24485 681037401268439e26a8593d5cc73b06 306 SUPERFAMILY SSF46785 1 86 5.0E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24485 681037401268439e26a8593d5cc73b06 306 SUPERFAMILY SSF53850 88 292 4.56E-33 T 29-03-2018 Y880_RS24485 681037401268439e26a8593d5cc73b06 306 Gene3D G3DSA:3.40.190.10 176 262 4.4E-15 T 29-03-2018 Y880_RS24485 681037401268439e26a8593d5cc73b06 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.5E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 Pfam PF04792 V antigen (LcrV) protein 74 294 3.5E-68 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 SUPERFAMILY SSF103388 26 293 3.66E-99 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 108 128 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 250 269 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 30 55 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 206 226 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 87 105 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 156 179 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 131 153 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 228 249 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS05600 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 269 291 1.9E-69 T 29-03-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y880_RS02980 8c8801c81aa7efc6c77c15a7a03b4e85 204 SUPERFAMILY SSF53474 2 190 3.51E-23 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS02980 8c8801c81aa7efc6c77c15a7a03b4e85 204 Pfam PF12697 Alpha/beta hydrolase family 4 172 2.1E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS02980 8c8801c81aa7efc6c77c15a7a03b4e85 204 Gene3D G3DSA:3.40.50.1820 1 185 3.2E-9 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05090 98c8393825506dc495d9f23416708f3c 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 3 171 4.6E-98 T 29-03-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS05090 98c8393825506dc495d9f23416708f3c 171 Gene3D G3DSA:3.10.129.10 1 171 6.5E-51 T 29-03-2018 Y880_RS05090 98c8393825506dc495d9f23416708f3c 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 1 171 51.643 T 29-03-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS05090 98c8393825506dc495d9f23416708f3c 171 SUPERFAMILY SSF54637 2 168 4.97E-58 T 29-03-2018 IPR029069 HotDog domain Y880_RS05090 98c8393825506dc495d9f23416708f3c 171 Pfam PF07977 FabA-like domain 28 158 1.3E-52 T 29-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS11070 86b3505bfe431edbf9e68771b9abf9e9 212 Pfam PF13353 4Fe-4S single cluster domain 16 144 8.8E-23 T 29-03-2018 Y880_RS11070 86b3505bfe431edbf9e68771b9abf9e9 212 SUPERFAMILY SSF102114 26 113 7.65E-6 T 29-03-2018 Y880_RS11070 86b3505bfe431edbf9e68771b9abf9e9 212 Gene3D G3DSA:3.20.20.70 25 176 3.8E-9 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS06285 f6c4bcd191f40013165cb1076d2d7e63 236 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 219 1.3E-22 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y880_RS06285 f6c4bcd191f40013165cb1076d2d7e63 236 Gene3D G3DSA:3.40.50.1240 1 230 1.3E-36 T 29-03-2018 IPR029033 Histidine phosphatase superfamily Y880_RS06285 f6c4bcd191f40013165cb1076d2d7e63 236 SMART SM00855 3 179 6.4E-12 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y880_RS06285 f6c4bcd191f40013165cb1076d2d7e63 236 SUPERFAMILY SSF53254 4 226 2.91E-38 T 29-03-2018 IPR029033 Histidine phosphatase superfamily Y880_RS09960 b891fff2768e24a684d3975863560aec 428 SUPERFAMILY SSF56954 11 422 6.28E-79 T 29-03-2018 Y880_RS09960 b891fff2768e24a684d3975863560aec 428 Gene3D G3DSA:1.20.1600.10 24 425 5.1E-66 T 29-03-2018 Y880_RS09960 b891fff2768e24a684d3975863560aec 428 Pfam PF02321 Outer membrane efflux protein 43 213 6.8E-26 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS09960 b891fff2768e24a684d3975863560aec 428 Pfam PF02321 Outer membrane efflux protein 246 420 4.6E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS01155 d269641effb5f63d36695e754020b81c 298 SUPERFAMILY SSF46785 1 113 6.31E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01155 d269641effb5f63d36695e754020b81c 298 SUPERFAMILY SSF53850 90 295 1.96E-43 T 29-03-2018 Y880_RS01155 d269641effb5f63d36695e754020b81c 298 Pfam PF03466 LysR substrate binding domain 91 293 9.2E-43 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS01155 d269641effb5f63d36695e754020b81c 298 Gene3D G3DSA:3.40.190.10 179 266 8.5E-22 T 29-03-2018 Y880_RS01155 d269641effb5f63d36695e754020b81c 298 Gene3D G3DSA:1.10.10.10 1 85 1.4E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01155 d269641effb5f63d36695e754020b81c 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.1E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS01155 d269641effb5f63d36695e754020b81c 298 Gene3D G3DSA:3.40.190.10 89 178 1.2E-24 T 29-03-2018 Y880_RS01065 a20cbd383a88887a0f7e526cb5700cae 319 SUPERFAMILY SSF50129 1 134 2.89E-33 T 29-03-2018 IPR011032 GroES-like Y880_RS01065 a20cbd383a88887a0f7e526cb5700cae 319 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 71 8.1E-5 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS01065 a20cbd383a88887a0f7e526cb5700cae 319 SUPERFAMILY SSF51735 113 286 2.07E-27 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS01065 a20cbd383a88887a0f7e526cb5700cae 319 Gene3D G3DSA:3.90.180.10 1 142 8.8E-39 T 29-03-2018 Y880_RS01065 a20cbd383a88887a0f7e526cb5700cae 319 SMART SM00829 10 317 2.4E-13 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS01065 a20cbd383a88887a0f7e526cb5700cae 319 Gene3D G3DSA:3.40.50.720 143 261 6.4E-18 T 29-03-2018 Y880_RS01065 a20cbd383a88887a0f7e526cb5700cae 319 Pfam PF00107 Zinc-binding dehydrogenase 151 261 1.0E-13 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS01555 4636bed2f34f4d4e787449df047ecbdf 117 SUPERFAMILY SSF52833 5 116 3.94E-35 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS01555 4636bed2f34f4d4e787449df047ecbdf 117 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 6 116 7.3E-45 T 29-03-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 Y880_RS01555 4636bed2f34f4d4e787449df047ecbdf 117 Pfam PF03960 ArsC family 9 115 3.7E-19 T 29-03-2018 IPR006660 Arsenate reductase-like Y880_RS01555 4636bed2f34f4d4e787449df047ecbdf 117 Gene3D G3DSA:3.40.30.10 1 117 2.3E-38 T 29-03-2018 Y880_RS00400 b960e766486e4f6d00af3d5f5ce7b112 278 SUPERFAMILY SSF109604 9 252 1.67E-60 T 29-03-2018 Y880_RS00400 b960e766486e4f6d00af3d5f5ce7b112 278 Gene3D G3DSA:1.10.3210.10 1 276 1.1E-45 T 29-03-2018 Y880_RS00400 b960e766486e4f6d00af3d5f5ce7b112 278 Pfam PF08668 HDOD domain 23 207 2.9E-47 T 29-03-2018 IPR013976 Metal-dependent hydrolase HDOD Y880_RS27185 f5c9f15e6896c9d4b9ed553ac4c76c17 211 SUPERFAMILY SSF52833 50 207 2.43E-49 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS27185 f5c9f15e6896c9d4b9ed553ac4c76c17 211 Pfam PF02630 SCO1/SenC 48 185 3.2E-37 T 29-03-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27185 f5c9f15e6896c9d4b9ed553ac4c76c17 211 Gene3D G3DSA:3.40.30.10 46 207 9.7E-32 T 29-03-2018 Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 SUPERFAMILY SSF53850 89 292 1.99E-38 T 29-03-2018 Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.2E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 Gene3D G3DSA:3.40.190.10 92 175 2.5E-17 T 29-03-2018 Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 Gene3D G3DSA:3.40.190.10 176 263 4.9E-24 T 29-03-2018 Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 Gene3D G3DSA:1.10.10.10 1 83 5.7E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 SUPERFAMILY SSF46785 1 111 3.82E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 Pfam PF03466 LysR substrate binding domain 89 291 5.3E-36 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07450 93b316a1985dcf1b95c2b656b8b9950d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS22660 6261cc622ce6d4ef9c5577802787519b 179 Gene3D G3DSA:3.10.129.10 40 176 4.9E-31 T 29-03-2018 Y880_RS22660 6261cc622ce6d4ef9c5577802787519b 179 Pfam PF03061 Thioesterase superfamily 88 165 2.4E-16 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS22660 6261cc622ce6d4ef9c5577802787519b 179 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 78 173 8.2E-24 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS22660 6261cc622ce6d4ef9c5577802787519b 179 SUPERFAMILY SSF54637 8 173 3.23E-36 T 29-03-2018 IPR029069 HotDog domain Y880_RS10740 ce3c2b31c80a2b3925b1d77f7b0af7fb 397 Pfam PF05940 NnrS protein 14 391 8.0E-113 T 29-03-2018 IPR010266 NnrS Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 SUPERFAMILY SSF53850 24 362 2.34E-99 T 29-03-2018 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PIRSF PIRSF019574 2 363 2.5E-132 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 Gene3D G3DSA:3.40.190.10 206 336 3.6E-18 T 29-03-2018 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 Pfam PF13416 Bacterial extracellular solute-binding protein 40 328 5.3E-31 T 29-03-2018 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 Gene3D G3DSA:3.40.190.10 21 205 4.5E-30 T 29-03-2018 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 175 194 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 152 166 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 29 45 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 212 231 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 121 137 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 262 281 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 88 101 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 72 86 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 307 333 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS04020 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 45 66 4.5E-64 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS05855 ab932f0c1719d72fbf7c6566057e2ac7 115 Gene3D G3DSA:3.40.30.10 2 104 0.001 T 29-03-2018 Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 Gene3D G3DSA:3.90.1150.10 4 164 1.1E-36 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 Gene3D G3DSA:3.90.1150.10 278 393 7.9E-20 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 210 247 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 PIRSF PIRSF000521 156 385 1.3E-27 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 PIRSF PIRSF000521 3 151 6.6E-6 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 Gene3D G3DSA:3.40.640.10 165 277 1.2E-34 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 SUPERFAMILY SSF53383 15 384 3.03E-101 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS29345 a75e0be73e2bdb29ea4786ba29c8eb87 393 Pfam PF00202 Aminotransferase class-III 19 382 7.5E-80 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 PIRSF PIRSF006294 1 513 6.8E-207 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 Gene3D G3DSA:3.90.228.20 280 511 7.4E-86 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 Gene3D G3DSA:3.90.228.20 200 279 7.7E-27 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 SUPERFAMILY SSF68923 5 199 2.09E-68 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 Pfam PF01293 Phosphoenolpyruvate carboxykinase 7 467 5.8E-188 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 SUPERFAMILY SSF53795 200 513 8.7E-127 T 29-03-2018 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 237 252 - T 29-03-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 1 513 52.348 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 513 8.6E-183 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y880_RS24555 b9730adeeec4d71ad52a2e404115d2cd 513 Gene3D G3DSA:3.40.449.10 8 198 7.4E-60 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Y880_RS05645 fe0587003c0917af732909106c3d342f 140 Pfam PF05932 Tir chaperone protein (CesT) family 3 120 1.4E-28 T 29-03-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 Y880_RS05645 fe0587003c0917af732909106c3d342f 140 Gene3D G3DSA:3.30.1460.10 1 138 1.8E-21 T 29-03-2018 Y880_RS05645 fe0587003c0917af732909106c3d342f 140 SUPERFAMILY SSF69635 2 126 5.65E-42 T 29-03-2018 Y880_RS05645 fe0587003c0917af732909106c3d342f 140 TIGRFAM TIGR02513 type_III_yscB: type III secretion system chaperone, YscB family 2 134 1.8E-55 T 29-03-2018 IPR013353 Type III secretion system chaperone YscB Y880_RS19710 512bee9b822b933ccc48ab157463449c 296 Pfam PF00892 EamA-like transporter family 150 281 1.4E-19 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS19710 512bee9b822b933ccc48ab157463449c 296 Pfam PF00892 EamA-like transporter family 3 135 2.2E-20 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS19710 512bee9b822b933ccc48ab157463449c 296 SUPERFAMILY SSF103481 36 138 2.09E-10 T 29-03-2018 Y880_RS19710 512bee9b822b933ccc48ab157463449c 296 SUPERFAMILY SSF103481 185 286 7.59E-15 T 29-03-2018 Y880_RS15530 6ddb749ed148fefdad374cff3a595247 188 Hamap MF_00146 dCTP deaminase [dcd]. 1 188 28.976 T 29-03-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 Y880_RS15530 6ddb749ed148fefdad374cff3a595247 188 Pfam PF00692 dUTPase 76 184 9.1E-9 T 29-03-2018 IPR029054 dUTPase-like Y880_RS15530 6ddb749ed148fefdad374cff3a595247 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 187 2.4E-51 T 29-03-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 Y880_RS15530 6ddb749ed148fefdad374cff3a595247 188 SUPERFAMILY SSF51283 3 187 1.83E-53 T 29-03-2018 IPR029054 dUTPase-like Y880_RS15530 6ddb749ed148fefdad374cff3a595247 188 Gene3D G3DSA:2.70.40.10 1 161 1.0E-59 T 29-03-2018 Y880_RS24580 114e2919388c21d8d8c6393d3e9e142c 166 Gene3D G3DSA:2.40.70.10 7 136 1.9E-38 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS24580 114e2919388c21d8d8c6393d3e9e142c 166 SUPERFAMILY SSF50630 9 143 4.12E-41 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS24580 114e2919388c21d8d8c6393d3e9e142c 166 Pfam PF05618 Putative ATP-dependant zinc protease 9 146 3.5E-48 T 29-03-2018 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 311 2.6E-50 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 395 2.3E-16 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.844 T 29-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 SMART SM00382 112 333 2.5E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 Pfam PF06689 ClpX C4-type zinc finger 14 51 3.9E-20 T 29-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 Gene3D G3DSA:3.40.50.300 57 315 3.0E-71 T 29-03-2018 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 412 2.3E-207 T 29-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 SUPERFAMILY SSF57716 14 49 1.14E-11 T 29-03-2018 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 Gene3D G3DSA:1.10.8.60 317 408 2.7E-34 T 29-03-2018 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 SMART SM00994 13 52 2.5E-24 T 29-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 SMART SM01086 317 412 8.9E-35 T 29-03-2018 IPR019489 Clp ATPase, C-terminal Y880_RS06135 8f7bec34ebbfb44721683e2d983a6e3b 426 SUPERFAMILY SSF52540 65 403 3.57E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20035 ebe5f2f352ba7414878cfdc38dd2a3e0 251 Pfam PF13444 Acetyltransferase (GNAT) domain 33 133 1.0E-29 T 29-03-2018 Y880_RS20035 ebe5f2f352ba7414878cfdc38dd2a3e0 251 Gene3D G3DSA:3.40.630.30 16 179 2.3E-29 T 29-03-2018 Y880_RS20035 ebe5f2f352ba7414878cfdc38dd2a3e0 251 SUPERFAMILY SSF55729 23 223 3.55E-38 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS01885 0d6c600f7a655279825ee0c288534b13 135 Pfam PF03061 Thioesterase superfamily 51 121 1.1E-12 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS01885 0d6c600f7a655279825ee0c288534b13 135 Gene3D G3DSA:3.10.129.10 6 135 1.4E-24 T 29-03-2018 Y880_RS01885 0d6c600f7a655279825ee0c288534b13 135 SUPERFAMILY SSF54637 11 130 9.53E-28 T 29-03-2018 IPR029069 HotDog domain Y880_RS01885 0d6c600f7a655279825ee0c288534b13 135 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 18 126 1.9E-16 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 SUPERFAMILY SSF54211 236 491 2.12E-98 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 185 3.2E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 29-03-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 630 32.88 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 Gene3D G3DSA:3.30.565.10 1 229 4.4E-53 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 SMART SM00387 30 187 1.8E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 SUPERFAMILY SSF110942 518 630 4.05E-35 T 29-03-2018 Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 SUPERFAMILY SSF55874 8 216 1.44E-65 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 Pfam PF00183 Hsp90 protein 227 629 3.1E-132 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PIRSF PIRSF002583 1 634 3.9E-218 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PRINTS PR00775 90kDa heat shock protein signature 8 28 3.2E-61 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PRINTS PR00775 90kDa heat shock protein signature 175 192 3.2E-61 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PRINTS PR00775 90kDa heat shock protein signature 193 211 3.2E-61 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PRINTS PR00775 90kDa heat shock protein signature 123 145 3.2E-61 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PRINTS PR00775 90kDa heat shock protein signature 96 113 3.2E-61 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PRINTS PR00775 90kDa heat shock protein signature 29 51 3.2E-61 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS05020 779af721d76805f4f2e37c253abbbfbf 634 PRINTS PR00775 90kDa heat shock protein signature 78 95 3.2E-61 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 SMART SM00965 63 114 1.1E-12 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 Pfam PF07660 Secretin and TonB N terminus short domain 64 113 3.0E-8 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 142 784 6.5E-125 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 Gene3D G3DSA:2.40.170.20 267 784 2.2E-82 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 Pfam PF07715 TonB-dependent Receptor Plug Domain 141 254 1.3E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 SUPERFAMILY SSF56935 126 784 5.09E-119 T 29-03-2018 Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 767 784 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 Gene3D G3DSA:2.170.130.10 114 260 1.4E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS17730 5586fdd76257556c97bc29bdd20c8b67 784 Pfam PF00593 TonB dependent receptor 344 781 5.2E-52 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 SUPERFAMILY SSF55681 109 290 1.33E-102 T 29-03-2018 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 SUPERFAMILY SSF55681 422 585 1.33E-102 T 29-03-2018 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 585 33.862 T 29-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 4.7E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 4.7E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 4.7E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 4.7E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 1.9E-243 T 29-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 Gene3D G3DSA:3.30.930.10 134 375 2.8E-51 T 29-03-2018 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 Gene3D G3DSA:3.30.930.10 376 587 8.7E-51 T 29-03-2018 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 SUPERFAMILY SSF55261 292 422 1.26E-44 T 29-03-2018 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 Gene3D G3DSA:2.40.50.140 1 109 9.8E-27 T 29-03-2018 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 559 1.8E-108 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 Pfam PF02938 GAD domain 310 409 1.3E-31 T 29-03-2018 IPR029351 GAD domain Reactome: R-HSA-379726 Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 SUPERFAMILY SSF50249 2 106 7.43E-34 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS01625 ca848f453d01c7910a4a37195bcc4765 591 Pfam PF01336 OB-fold nucleic acid binding domain 19 102 1.8E-16 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Y880_RS12255 6f38a9eb804f5c394c65049cd37ee09c 227 SUPERFAMILY SSF52540 5 223 4.33E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12255 6f38a9eb804f5c394c65049cd37ee09c 227 Pfam PF00005 ABC transporter 25 171 9.7E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS12255 6f38a9eb804f5c394c65049cd37ee09c 227 SMART SM00382 34 220 9.2E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS12255 6f38a9eb804f5c394c65049cd37ee09c 227 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS12255 6f38a9eb804f5c394c65049cd37ee09c 227 Gene3D G3DSA:3.40.50.300 1 227 7.2E-64 T 29-03-2018 Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 Gene3D G3DSA:3.40.50.300 1 257 1.9E-70 T 29-03-2018 Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 Gene3D G3DSA:3.10.580.10 258 371 5.4E-18 T 29-03-2018 Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 SMART SM00116 262 310 1.6E-5 T 29-03-2018 IPR000644 CBS domain Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 SMART SM00116 321 367 3.2 T 29-03-2018 IPR000644 CBS domain Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 Pfam PF00571 CBS domain 321 367 0.0073 T 29-03-2018 IPR000644 CBS domain Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 Pfam PF00571 CBS domain 260 307 1.4E-8 T 29-03-2018 IPR000644 CBS domain Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 Pfam PF00005 ABC transporter 23 168 5.3E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 SMART SM00382 31 226 2.5E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 SUPERFAMILY SSF54631 253 367 6.13E-20 T 29-03-2018 Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 SUPERFAMILY SSF52540 1 245 2.26E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17675 c1a30b3a73d976023f80d7c5d51f0f91 387 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 20 367 1.8E-104 T 29-03-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 SMART SM00347 26 127 5.5E-23 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 6.3E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 6.3E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 6.3E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 6.3E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 SUPERFAMILY SSF46785 9 142 2.55E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 Gene3D G3DSA:1.10.10.10 1 144 6.9E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14790 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 Pfam PF12802 MarR family 31 91 1.1E-11 T 29-03-2018 Y880_RS08755 805f2ee4737152ddfffde8febadc3512 427 Gene3D G3DSA:3.30.2010.10 216 316 9.7E-9 T 29-03-2018 Y880_RS08755 805f2ee4737152ddfffde8febadc3512 427 Pfam PF01435 Peptidase family M48 285 380 6.5E-9 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 205 4.1E-7 T 29-03-2018 Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 4.6E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 4.6E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.6E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 4.6E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.6E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 Gene3D G3DSA:3.40.50.720 6 290 3.0E-58 T 29-03-2018 Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 SUPERFAMILY SSF51735 7 253 2.15E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 7.6E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 7.6E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 7.6E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01905 ccfff6382e6618da8dbc5e27a6e585c7 305 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 249 6.1E-42 T 29-03-2018 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 SUPERFAMILY SSF50022 24 167 4.71E-44 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 Gene3D G3DSA:2.102.10.10 47 155 5.2E-23 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 40 65 1.8E-27 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 1.8E-27 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 91 111 1.8E-27 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 152 178 1.8E-27 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 70 85 1.8E-27 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 112 132 1.8E-27 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 Pfam PF00355 Rieske [2Fe-2S] domain 56 131 1.6E-16 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 188 412 3.0E-46 T 29-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 SUPERFAMILY SSF55961 168 416 3.38E-53 T 29-03-2018 Y880_RS25700 f83954f74eb4c7683f2645ce7c221290 429 Gene3D G3DSA:3.90.380.10 156 426 1.2E-62 T 29-03-2018 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Gene3D G3DSA:1.10.760.10 537 652 3.3E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 311 392 1.1E-6 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 561 648 1.7E-6 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 SUPERFAMILY SSF46626 24 156 2.22E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 SUPERFAMILY SSF46626 552 659 7.84E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 SUPERFAMILY SSF46626 180 290 2.8E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Pfam PF00034 Cytochrome c 34 132 2.0E-4 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 SUPERFAMILY SSF46626 434 539 9.42E-24 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Gene3D G3DSA:1.10.760.10 309 420 1.1E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Gene3D G3DSA:1.10.760.10 21 147 1.2E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 SUPERFAMILY SSF46626 311 416 4.02E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Gene3D G3DSA:1.10.760.10 158 302 2.8E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS21190 dc49f5444029aea56554b9aa1a6a03be 675 Gene3D G3DSA:1.10.760.10 442 536 1.7E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Pfam PF00512 His Kinase A (phospho-acceptor) domain 407 472 1.8E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 SUPERFAMILY SSF55874 461 633 5.11E-49 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Pfam PF07696 7TMR-DISM extracellular 2 36 168 3.0E-32 T 29-03-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 SUPERFAMILY SSF52172 789 913 1.71E-34 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Gene3D G3DSA:3.30.565.10 476 643 3.7E-52 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 SMART SM00448 789 907 3.4E-34 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 560 574 3.0E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 632 3.0E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 588 3.0E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 613 3.0E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Pfam PF07695 7TM diverse intracellular signalling 183 383 5.3E-35 T 29-03-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 SMART SM00388 407 472 2.6E-23 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 SMART SM00387 519 635 8.2E-41 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Gene3D G3DSA:1.10.287.130 397 468 1.2E-18 T 29-03-2018 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Gene3D G3DSA:3.40.50.2300 775 918 9.7E-37 T 29-03-2018 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 634 2.4E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 SUPERFAMILY SSF47384 395 473 3.73E-20 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS15430 8f8b8a59cb10acf3d7ab8c5249e45ca8 918 Pfam PF00072 Response regulator receiver domain 791 907 7.5E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS26335 05e9626ce210e91592e8cbccb8a15c3a 585 Pfam PF00999 Sodium/hydrogen exchanger family 12 376 9.1E-64 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y880_RS26335 05e9626ce210e91592e8cbccb8a15c3a 585 Gene3D G3DSA:1.20.91.10 237 312 5.9E-7 T 29-03-2018 Y880_RS13115 b7af5924d6e3922495fffe70fa49e468 268 SUPERFAMILY SSF50800 152 267 5.58E-22 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS13115 b7af5924d6e3922495fffe70fa49e468 268 SUPERFAMILY SSF50800 2 59 5.58E-22 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS13115 b7af5924d6e3922495fffe70fa49e468 268 SUPERFAMILY SSF141673 4 133 4.84E-34 T 29-03-2018 Y880_RS13115 b7af5924d6e3922495fffe70fa49e468 268 Pfam PF03473 MOSC domain 142 265 9.2E-32 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y880_RS13115 b7af5924d6e3922495fffe70fa49e468 268 Gene3D G3DSA:2.40.33.20 1 268 1.0E-55 T 29-03-2018 Y880_RS13115 b7af5924d6e3922495fffe70fa49e468 268 Pfam PF03476 MOSC N-terminal beta barrel domain 1 119 1.2E-34 T 29-03-2018 IPR005303 MOSC, N-terminal beta barrel Y880_RS03040 596f5325ab61e55d54b830952b43da45 123 SUPERFAMILY SSF111369 40 104 2.35E-12 T 29-03-2018 Y880_RS03040 596f5325ab61e55d54b830952b43da45 123 Pfam PF13533 Biotin-lipoyl like 45 92 2.7E-15 T 29-03-2018 Y880_RS03040 596f5325ab61e55d54b830952b43da45 123 Gene3D G3DSA:2.40.50.100 44 116 1.5E-17 T 29-03-2018 Y880_RS20280 efe3a0005cef433b72fafa9f31c9c652 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 174 292 1.0E-31 T 29-03-2018 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 Y880_RS20280 efe3a0005cef433b72fafa9f31c9c652 303 Gene3D G3DSA:3.40.50.720 1 172 1.1E-20 T 29-03-2018 Y880_RS20280 efe3a0005cef433b72fafa9f31c9c652 303 Gene3D G3DSA:1.10.1040.10 174 299 1.0E-32 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS20280 efe3a0005cef433b72fafa9f31c9c652 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 296 4.4E-86 T 29-03-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 Y880_RS20280 efe3a0005cef433b72fafa9f31c9c652 303 SUPERFAMILY SSF51735 1 169 3.57E-30 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS20280 efe3a0005cef433b72fafa9f31c9c652 303 SUPERFAMILY SSF48179 174 293 4.42E-32 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS20280 efe3a0005cef433b72fafa9f31c9c652 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 149 1.5E-34 T 29-03-2018 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 Y880_RS21900 1c18f0056257340a25840f6c602bded1 948 Gene3D G3DSA:3.40.50.300 8 815 4.6E-7 T 29-03-2018 Y880_RS18110 038155c92531f8d556c0cb3085fd636c 549 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 182 278 2.7E-12 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS18110 038155c92531f8d556c0cb3085fd636c 549 SUPERFAMILY SSF47203 295 447 1.77E-40 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS18110 038155c92531f8d556c0cb3085fd636c 549 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 403 422 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS18110 038155c92531f8d556c0cb3085fd636c 549 SUPERFAMILY SSF56645 61 299 1.69E-36 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS18110 038155c92531f8d556c0cb3085fd636c 549 Gene3D G3DSA:2.40.110.10 173 278 6.1E-18 T 29-03-2018 Y880_RS18110 038155c92531f8d556c0cb3085fd636c 549 Gene3D G3DSA:1.20.140.10 279 449 3.9E-35 T 29-03-2018 Y880_RS18110 038155c92531f8d556c0cb3085fd636c 549 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 290 444 4.5E-29 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS22550 7c300fa9f1fdddffde543cfcef78d3f6 309 Gene3D G3DSA:3.90.1670.10 19 309 3.6E-89 T 29-03-2018 IPR024064 FdhE-like Y880_RS22550 7c300fa9f1fdddffde543cfcef78d3f6 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 16 304 3.4E-98 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y880_RS22550 7c300fa9f1fdddffde543cfcef78d3f6 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 307 42.731 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y880_RS22550 7c300fa9f1fdddffde543cfcef78d3f6 309 SUPERFAMILY SSF144020 20 307 4.18E-88 T 29-03-2018 IPR024064 FdhE-like Y880_RS22550 7c300fa9f1fdddffde543cfcef78d3f6 309 PIRSF PIRSF018296 1 309 1.1E-113 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y880_RS22550 7c300fa9f1fdddffde543cfcef78d3f6 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 306 8.1E-155 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y880_RS03310 dfc25d4b3d2194c0e756f96c7a2fc812 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 7.4E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03310 dfc25d4b3d2194c0e756f96c7a2fc812 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 7.4E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03310 dfc25d4b3d2194c0e756f96c7a2fc812 186 SUPERFAMILY SSF46689 2 81 5.64E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03310 dfc25d4b3d2194c0e756f96c7a2fc812 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 2.6E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03310 dfc25d4b3d2194c0e756f96c7a2fc812 186 Gene3D G3DSA:1.10.10.60 46 96 2.9E-7 T 29-03-2018 Y880_RS03310 dfc25d4b3d2194c0e756f96c7a2fc812 186 Gene3D G3DSA:1.10.10.60 2 45 9.9E-17 T 29-03-2018 Y880_RS01915 9fbae738c4f5469979d6e52728d1c644 416 Gene3D G3DSA:2.40.160.10 3 416 1.7E-118 T 29-03-2018 Y880_RS01915 9fbae738c4f5469979d6e52728d1c644 416 Pfam PF03573 outer membrane porin, OprD family 23 414 5.5E-158 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS08225 2072046db6c1de46aceab277d4ac7ff0 238 Gene3D G3DSA:1.10.3720.10 7 232 7.9E-42 T 29-03-2018 Y880_RS08225 2072046db6c1de46aceab277d4ac7ff0 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 229 1.5E-13 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS08225 2072046db6c1de46aceab277d4ac7ff0 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 80 9.9E-20 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS08225 2072046db6c1de46aceab277d4ac7ff0 238 SUPERFAMILY SSF161098 13 217 2.49E-41 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 SUPERFAMILY SSF118215 17 399 6.8E-96 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 5 406 36.614 T 29-03-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 Pfam PF00375 Sodium:dicarboxylate symporter family 17 396 1.0E-62 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 1.2E-17 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 PRINTS PR00173 Glutamate-aspartate symporter signature 43 68 1.2E-17 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 PRINTS PR00173 Glutamate-aspartate symporter signature 187 206 1.2E-17 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 PRINTS PR00173 Glutamate-aspartate symporter signature 351 371 1.2E-17 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 1.2E-17 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 PRINTS PR00173 Glutamate-aspartate symporter signature 324 343 1.2E-17 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 PRINTS PR00173 Glutamate-aspartate symporter signature 289 315 1.2E-17 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS07375 636effa7dd34ce2f93e6c82ebe0cca33 409 Gene3D G3DSA:1.10.3860.10 6 407 4.2E-75 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS12385 a1f364f02a756a38f507ced69a42393f 55 Pfam PF11446 Protein of unknown function (DUF2897) 1 52 2.0E-25 T 29-03-2018 IPR021550 Protein of unknown function DUF2897 Y880_RS22020 f3f535421bf269d37b64f8c7a6084c4b 354 Gene3D G3DSA:3.40.1570.10 1 181 5.3E-56 T 29-03-2018 Y880_RS22020 f3f535421bf269d37b64f8c7a6084c4b 354 SUPERFAMILY SSF144064 14 351 5.59E-126 T 29-03-2018 Y880_RS22020 f3f535421bf269d37b64f8c7a6084c4b 354 Pfam PF05171 Haemin-degrading HemS.ChuX domain 220 351 1.5E-42 T 29-03-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 Y880_RS22020 f3f535421bf269d37b64f8c7a6084c4b 354 Pfam PF05171 Haemin-degrading HemS.ChuX domain 38 167 5.1E-42 T 29-03-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 Y880_RS22020 f3f535421bf269d37b64f8c7a6084c4b 354 Gene3D G3DSA:3.40.1570.10 182 353 9.6E-53 T 29-03-2018 Y880_RS16710 5abcf013a0f47f78152817bc7a9ab234 301 SUPERFAMILY SSF46785 1 111 8.77E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16710 5abcf013a0f47f78152817bc7a9ab234 301 Pfam PF03466 LysR substrate binding domain 91 285 3.2E-36 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS16710 5abcf013a0f47f78152817bc7a9ab234 301 Gene3D G3DSA:3.40.190.10 88 172 2.1E-12 T 29-03-2018 Y880_RS16710 5abcf013a0f47f78152817bc7a9ab234 301 Gene3D G3DSA:3.40.190.10 173 256 3.9E-13 T 29-03-2018 Y880_RS16710 5abcf013a0f47f78152817bc7a9ab234 301 Gene3D G3DSA:1.10.10.10 1 87 3.4E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16710 5abcf013a0f47f78152817bc7a9ab234 301 SUPERFAMILY SSF53850 91 288 5.12E-37 T 29-03-2018 Y880_RS16710 5abcf013a0f47f78152817bc7a9ab234 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.0E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 SUPERFAMILY SSF47240 4 155 7.31E-48 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 Pfam PF00210 Ferritin-like domain 17 155 3.1E-28 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 ProSitePatterns PS00818 Dps protein family signature 1. 37 53 - T 29-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 ProSitePatterns PS00819 Dps protein family signature 2. 63 77 - T 29-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 37 53 6.3E-12 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 132 150 6.3E-12 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 61 77 6.3E-12 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 PIRSF PIRSF005900 1 156 9.1E-47 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 Y880_RS01620 87366b4bbf4a500df7a09d80abdc4cc0 156 Gene3D G3DSA:1.20.1260.10 6 156 2.5E-49 T 29-03-2018 IPR012347 Ferritin-related Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 SUPERFAMILY SSF53098 325 473 4.1E-53 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Pfam PF12836 Helix-hairpin-helix motif 495 559 4.3E-29 T 29-03-2018 Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Pfam PF00575 S1 RNA binding domain 653 724 2.4E-20 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 SUPERFAMILY SSF47781 564 636 1.71E-20 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Gene3D G3DSA:1.10.3500.10 108 361 5.1E-74 T 29-03-2018 IPR023323 Tex-like domain Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Gene3D G3DSA:1.10.10.650 4 107 3.8E-32 T 29-03-2018 IPR023319 Tex-like protein, HTH domain Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Gene3D G3DSA:2.40.50.140 635 730 4.5E-26 T 29-03-2018 Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 SUPERFAMILY SSF50249 642 729 1.57E-25 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Gene3D G3DSA:1.10.3500.10 362 502 3.9E-41 T 29-03-2018 IPR023323 Tex-like domain Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Pfam PF09371 Tex-like protein N-terminal domain 20 197 1.1E-63 T 29-03-2018 IPR018974 Tex-like protein, N-terminal Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 SMART SM00732 329 428 4.2E-41 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 SMART SM00316 653 724 1.6E-24 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 SUPERFAMILY SSF158832 4 324 1.83E-116 T 29-03-2018 Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Pfam PF16921 Tex protein YqgF-like domain 330 455 3.5E-53 T 29-03-2018 IPR032639 Tex protein, YqgF-like domain Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 SUPERFAMILY SSF47781 474 560 4.22E-28 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS24605 9a065560a56fe2331aad4eb83cba90ad 754 Gene3D G3DSA:1.10.150.310 503 634 1.1E-42 T 29-03-2018 Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 SUPERFAMILY SSF56801 22 570 4.71E-132 T 29-03-2018 Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 ProSitePatterns PS00455 Putative AMP-binding domain signature. 221 232 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 Gene3D G3DSA:3.40.50.980 27 226 9.6E-26 T 29-03-2018 Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 Gene3D G3DSA:3.40.50.980 227 381 8.8E-44 T 29-03-2018 Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 Pfam PF00501 AMP-binding enzyme 34 476 4.3E-87 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 Gene3D G3DSA:3.30.300.30 469 572 1.9E-25 T 29-03-2018 Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 Pfam PF13193 AMP-binding enzyme C-terminal domain 486 561 1.8E-16 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS17515 f6adabe473acd091ef3666d6ece256dd 632 Gene3D G3DSA:2.30.38.10 382 468 3.2E-22 T 29-03-2018 Y880_RS06205 1565da6395c7de07811b9434f3648f95 148 Pfam PF00075 RNase H 5 143 5.7E-52 T 29-03-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 Y880_RS06205 1565da6395c7de07811b9434f3648f95 148 Hamap MF_00042 Ribonuclease H [rnhA]. 4 148 33.806 T 29-03-2018 IPR022892 Ribonuclease HI GO:0004523 Y880_RS06205 1565da6395c7de07811b9434f3648f95 148 Gene3D G3DSA:3.30.420.10 1 147 3.7E-54 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS06205 1565da6395c7de07811b9434f3648f95 148 SUPERFAMILY SSF53098 5 143 3.16E-58 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS20790 00188b23f0c35420998f3f64c368328b 532 SUPERFAMILY SSF53850 27 531 3.65E-147 T 29-03-2018 Y880_RS20790 00188b23f0c35420998f3f64c368328b 532 Gene3D G3DSA:3.40.190.10 202 297 1.6E-26 T 29-03-2018 Y880_RS20790 00188b23f0c35420998f3f64c368328b 532 Gene3D G3DSA:3.10.105.10 298 503 1.9E-61 T 29-03-2018 Y880_RS20790 00188b23f0c35420998f3f64c368328b 532 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 449 1.0E-98 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain Y880_RS20790 00188b23f0c35420998f3f64c368328b 532 PIRSF PIRSF002741 13 529 3.1E-105 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y880_RS20790 00188b23f0c35420998f3f64c368328b 532 Gene3D G3DSA:3.90.76.10 36 201 4.6E-36 T 29-03-2018 Y880_RS21550 293c81901f44f7c1ff916f0f708e5f34 386 Gene3D G3DSA:3.40.1130.10 57 312 6.5E-18 T 29-03-2018 Y880_RS21550 293c81901f44f7c1ff916f0f708e5f34 386 SUPERFAMILY SSF69593 89 239 3.92E-6 T 29-03-2018 Y880_RS21550 293c81901f44f7c1ff916f0f708e5f34 386 Pfam PF01553 Acyltransferase 90 210 2.8E-8 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 Gene3D G3DSA:1.10.260.40 1 55 1.2E-20 T 29-03-2018 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 Gene3D G3DSA:3.40.50.2300 178 314 6.4E-19 T 29-03-2018 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 SUPERFAMILY SSF47413 2 58 1.41E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 246 1.6E-20 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 Gene3D G3DSA:3.40.50.2300 56 177 1.6E-35 T 29-03-2018 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 SMART SM00354 1 73 1.8E-28 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 29-03-2018 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 SUPERFAMILY SSF53822 60 315 2.94E-52 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 329 2.6E-132 T 29-03-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 Y880_RS15935 37f1137a4964c7c016bbfa80b74e4786 329 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 50 3.3E-18 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y880_RS17640 25828f1e48d55e54a0805eeb885b4e29 299 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 34 259 3.4E-56 T 29-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Y880_RS17640 25828f1e48d55e54a0805eeb885b4e29 299 Pfam PF13242 HAD-hyrolase-like 210 270 6.8E-8 T 29-03-2018 Y880_RS17640 25828f1e48d55e54a0805eeb885b4e29 299 Gene3D G3DSA:3.40.50.1000 25 292 1.4E-23 T 29-03-2018 IPR023214 HAD-like domain Y880_RS17640 25828f1e48d55e54a0805eeb885b4e29 299 SUPERFAMILY SSF56784 30 268 2.07E-35 T 29-03-2018 IPR023214 HAD-like domain Y880_RS17640 25828f1e48d55e54a0805eeb885b4e29 299 Pfam PF13344 Haloacid dehalogenase-like hydrolase 34 119 2.1E-9 T 29-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Y880_RS17640 25828f1e48d55e54a0805eeb885b4e29 299 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 24 259 2.9E-109 T 29-03-2018 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 Pfam PF03471 Transporter associated domain 439 514 2.3E-18 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 SUPERFAMILY SSF56176 438 514 3.0E-18 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 SUPERFAMILY SSF54631 291 426 3.77E-21 T 29-03-2018 Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 Pfam PF03741 Integral membrane protein TerC family 15 203 5.9E-47 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 SMART SM01091 437 515 4.7E-22 T 29-03-2018 IPR005170 Transporter-associated domain Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 Gene3D G3DSA:3.30.465.10 432 515 3.6E-20 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 Gene3D G3DSA:3.10.580.10 284 431 2.3E-25 T 29-03-2018 Y880_RS03555 db4ee5ecd03d67e62aa5ed0471330c59 515 Pfam PF00571 CBS domain 374 423 1.1E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 SUPERFAMILY SSF47384 404 484 1.12E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 530 644 3.7E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Gene3D G3DSA:3.30.565.10 487 651 1.8E-41 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 SUPERFAMILY SSF55874 472 642 2.62E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 SMART SM00388 418 483 5.3E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 584 1.0E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 605 623 1.0E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 588 598 1.0E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 642 1.0E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Pfam PF00072 Response regulator receiver domain 670 780 4.4E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Pfam PF00512 His Kinase A (phospho-acceptor) domain 419 482 1.7E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Gene3D G3DSA:1.10.287.130 408 478 1.4E-14 T 29-03-2018 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 SMART SM00387 530 645 1.2E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Pfam PF07696 7TMR-DISM extracellular 2 32 171 3.4E-36 T 29-03-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 SMART SM00448 668 781 5.5E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Gene3D G3DSA:3.40.50.2300 661 789 4.9E-42 T 29-03-2018 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 Pfam PF07695 7TM diverse intracellular signalling 184 386 3.3E-56 T 29-03-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y880_RS18120 51ee5de6c7b386d1d6216eb168cc9012 795 SUPERFAMILY SSF52172 667 785 1.05E-39 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 137 236 5.5E-19 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 Gene3D G3DSA:1.20.140.10 354 511 6.6E-23 T 29-03-2018 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 240 337 1.0E-8 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 Gene3D G3DSA:1.10.540.10 79 238 1.5E-32 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 363 508 2.4E-13 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 SUPERFAMILY SSF56645 123 358 1.16E-46 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 SUPERFAMILY SSF47203 363 513 4.83E-27 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 Gene3D G3DSA:2.40.110.10 239 353 4.2E-17 T 29-03-2018 Y880_RS11615 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF09317 Domain of unknown function (DUF1974) 517 802 4.1E-105 T 29-03-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 Pfam PF00255 Glutathione peroxidase 8 112 6.8E-40 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 PIRSF PIRSF000303 1 161 4.1E-64 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 29-03-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 29-03-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 Gene3D G3DSA:3.40.30.10 5 161 1.4E-46 T 29-03-2018 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 SUPERFAMILY SSF52833 5 160 2.05E-60 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.7E-20 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.7E-20 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS12095 6418c0f43374c5dd3d8c5df23126d87f 161 PRINTS PR01011 Glutathione peroxidase family signature 124 133 2.7E-20 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS21510 70d02d801e5e7a1da594072eee20ef5f 147 Gene3D G3DSA:3.10.450.50 2 135 1.9E-15 T 29-03-2018 Y880_RS21510 70d02d801e5e7a1da594072eee20ef5f 147 TIGRFAM TIGR02096 TIGR02096: conserved hypothetical protein 7 135 5.0E-43 T 29-03-2018 IPR011721 Conserved hypothetical protein CHP02096 Y880_RS21510 70d02d801e5e7a1da594072eee20ef5f 147 Pfam PF07366 SnoaL-like polyketide cyclase 15 134 1.6E-13 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS21510 70d02d801e5e7a1da594072eee20ef5f 147 SUPERFAMILY SSF54427 3 141 6.14E-25 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS11715 431f24a6b0971f9942e76493cac0bcc7 260 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 13 225 6.9E-88 T 29-03-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y880_RS11715 431f24a6b0971f9942e76493cac0bcc7 260 Pfam PF08900 Domain of unknown function (DUF1845) 12 222 9.8E-78 T 29-03-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y880_RS23390 f7070e7e1e532ee3d57cf74bec803409 248 Pfam PF11738 Protein of unknown function (DUF3298) 183 232 2.5E-5 T 29-03-2018 IPR021729 Domain of unknown function DUF3298 Y880_RS23390 f7070e7e1e532ee3d57cf74bec803409 248 Gene3D G3DSA:3.30.565.40 25 153 4.4E-25 T 29-03-2018 Y880_RS23390 f7070e7e1e532ee3d57cf74bec803409 248 Gene3D G3DSA:3.90.640.20 154 248 3.5E-14 T 29-03-2018 IPR021729 Domain of unknown function DUF3298 Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 SUPERFAMILY SSF51735 5 250 6.86E-72 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 186 3.0E-4 T 29-03-2018 Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 Gene3D G3DSA:3.40.50.720 46 252 9.8E-61 T 29-03-2018 Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 Gene3D G3DSA:3.40.50.720 1 45 1.0E-7 T 29-03-2018 Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.3E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 2.3E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 2.3E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26295 8eed48be68580a7c938f442e7c783aa1 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 249 6.0E-59 T 29-03-2018 Y880_RS20470 53b6835ec36fc2082341824ff5d05432 142 PIRSF PIRSF002181 1 142 1.1E-53 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y880_RS20470 53b6835ec36fc2082341824ff5d05432 142 SUPERFAMILY SSF52161 1 139 2.49E-61 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y880_RS20470 53b6835ec36fc2082341824ff5d05432 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 29.956 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y880_RS20470 53b6835ec36fc2082341824ff5d05432 142 Gene3D G3DSA:3.90.1180.10 1 142 1.0E-64 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y880_RS20470 53b6835ec36fc2082341824ff5d05432 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 141 2.9E-66 T 29-03-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS20470 53b6835ec36fc2082341824ff5d05432 142 Pfam PF00572 Ribosomal protein L13 15 138 8.2E-59 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y880_RS20470 53b6835ec36fc2082341824ff5d05432 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 29-03-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 Y880_RS10620 0a7ff7c8344ae362a8862645147ce861 166 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 123 141 - T 29-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10620 0a7ff7c8344ae362a8862645147ce861 166 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 22 165 1.5E-48 T 29-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10620 0a7ff7c8344ae362a8862645147ce861 166 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 23 165 4.7E-50 T 29-03-2018 Y880_RS10620 0a7ff7c8344ae362a8862645147ce861 166 Gene3D G3DSA:3.40.30.10 84 166 6.2E-12 T 29-03-2018 Y880_RS10620 0a7ff7c8344ae362a8862645147ce861 166 SUPERFAMILY SSF52833 15 165 3.58E-48 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS10620 0a7ff7c8344ae362a8862645147ce861 166 PIRSF PIRSF000216 3 166 5.0E-52 T 29-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS08645 0af5f1ddf07d68cca532df7363392e6e 316 SUPERFAMILY SSF53613 2 309 7.02E-80 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS08645 0af5f1ddf07d68cca532df7363392e6e 316 Gene3D G3DSA:3.40.1190.20 4 315 4.4E-66 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS08645 0af5f1ddf07d68cca532df7363392e6e 316 Pfam PF00294 pfkB family carbohydrate kinase 5 303 6.8E-59 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB Y880_RS08645 0af5f1ddf07d68cca532df7363392e6e 316 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 255 268 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y880_RS29980 82798b4769b956f52734b08f00ad3638 112 Pfam PF01230 HIT domain 11 106 8.6E-26 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS29980 82798b4769b956f52734b08f00ad3638 112 Gene3D G3DSA:3.30.428.10 1 109 3.7E-36 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS29980 82798b4769b956f52734b08f00ad3638 112 PRINTS PR00332 Histidine triad family signature 92 102 1.4E-19 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS29980 82798b4769b956f52734b08f00ad3638 112 PRINTS PR00332 Histidine triad family signature 25 43 1.4E-19 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS29980 82798b4769b956f52734b08f00ad3638 112 PRINTS PR00332 Histidine triad family signature 4 20 1.4E-19 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS29980 82798b4769b956f52734b08f00ad3638 112 ProSitePatterns PS00892 HIT domain signature. 85 103 - T 29-03-2018 IPR019808 Histidine triad, conserved site Y880_RS29980 82798b4769b956f52734b08f00ad3638 112 SUPERFAMILY SSF54197 1 111 3.54E-40 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS20270 5860754cd9c75ce4d036141cdaccdb01 159 Gene3D G3DSA:3.30.70.990 10 93 2.0E-26 T 29-03-2018 IPR035570 UPF0234 N-terminal domain Y880_RS20270 5860754cd9c75ce4d036141cdaccdb01 159 SUPERFAMILY SSF89963 87 159 4.45E-29 T 29-03-2018 IPR007551 Protein of unknown function DUF520 Y880_RS20270 5860754cd9c75ce4d036141cdaccdb01 159 Gene3D G3DSA:3.30.70.860 94 158 1.3E-33 T 29-03-2018 IPR035571 UPF0234/UPF0381 domain Y880_RS20270 5860754cd9c75ce4d036141cdaccdb01 159 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 159 29.074 T 29-03-2018 IPR007551 Protein of unknown function DUF520 Y880_RS20270 5860754cd9c75ce4d036141cdaccdb01 159 Pfam PF04461 Protein of unknown function (DUF520) 2 158 1.0E-61 T 29-03-2018 IPR007551 Protein of unknown function DUF520 Y880_RS20270 5860754cd9c75ce4d036141cdaccdb01 159 SUPERFAMILY SSF89963 2 85 1.22E-26 T 29-03-2018 IPR007551 Protein of unknown function DUF520 Y880_RS19790 4f04c44d66a718dbb743dc4d99feeb43 394 Gene3D G3DSA:3.40.50.2300 10 140 0.012 T 29-03-2018 Y880_RS19790 4f04c44d66a718dbb743dc4d99feeb43 394 Gene3D G3DSA:3.40.50.300 150 374 3.1E-21 T 29-03-2018 Y880_RS19790 4f04c44d66a718dbb743dc4d99feeb43 394 Pfam PF16968 Pilus assembly protein TadZ N-terminal 1 133 4.2E-87 T 29-03-2018 IPR031580 Pilus assembly protein TadZ, N-terminal Y880_RS19790 4f04c44d66a718dbb743dc4d99feeb43 394 SUPERFAMILY SSF52540 150 372 7.54E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09235 94e501375e983987689e8528fe515418 424 Gene3D G3DSA:3.40.190.10 89 377 5.1E-17 T 29-03-2018 Y880_RS09235 94e501375e983987689e8528fe515418 424 SUPERFAMILY SSF53850 86 374 7.76E-34 T 29-03-2018 Y880_RS09235 94e501375e983987689e8528fe515418 424 Pfam PF13343 Bacterial extracellular solute-binding protein 154 336 2.2E-10 T 29-03-2018 Y880_RS16160 e79b82bb1766551c7e3b60fffabcd88d 536 PIRSF PIRSF500060 12 532 2.4E-239 T 29-03-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria Y880_RS16160 e79b82bb1766551c7e3b60fffabcd88d 536 Gene3D G3DSA:3.20.20.70 93 503 5.3E-98 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS16160 e79b82bb1766551c7e3b60fffabcd88d 536 SUPERFAMILY SSF51395 6 502 8.37E-139 T 29-03-2018 Y880_RS16160 e79b82bb1766551c7e3b60fffabcd88d 536 Pfam PF01645 Conserved region in glutamate synthase 158 475 1.6E-81 T 29-03-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Y880_RS16160 e79b82bb1766551c7e3b60fffabcd88d 536 PIRSF PIRSF006429 8 535 3.4E-164 T 29-03-2018 IPR024188 Glutamate synthase large subunit-like protein Y880_RS09060 4c712596d1e173b4171645483ba3dda6 252 Gene3D G3DSA:3.40.1190.20 2 252 1.6E-41 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS09060 4c712596d1e173b4171645483ba3dda6 252 Pfam PF00294 pfkB family carbohydrate kinase 4 252 4.2E-21 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB Y880_RS09060 4c712596d1e173b4171645483ba3dda6 252 SUPERFAMILY SSF53613 3 252 5.89E-48 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS06020 2e1d466389bb23407a9724225d5112f9 402 SUPERFAMILY SSF53850 22 257 7.19E-26 T 29-03-2018 Y880_RS06020 2e1d466389bb23407a9724225d5112f9 402 Pfam PF13379 NMT1-like family 16 267 5.7E-90 T 29-03-2018 Y880_RS06020 2e1d466389bb23407a9724225d5112f9 402 Gene3D G3DSA:3.40.190.10 17 111 1.3E-7 T 29-03-2018 Y880_RS06020 2e1d466389bb23407a9724225d5112f9 402 Gene3D G3DSA:3.40.190.10 132 349 2.5E-35 T 29-03-2018 Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 Gene3D G3DSA:3.40.50.980 173 323 3.5E-30 T 29-03-2018 Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 Pfam PF00550 Phosphopantetheine attachment site 529 589 2.1E-5 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 Gene3D G3DSA:3.30.300.30 418 513 3.7E-18 T 29-03-2018 Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 Pfam PF00501 AMP-binding enzyme 33 422 6.2E-62 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 SUPERFAMILY SSF56801 23 536 4.58E-105 T 29-03-2018 Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 Gene3D G3DSA:3.40.50.980 23 172 2.8E-24 T 29-03-2018 Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 SUPERFAMILY SSF47336 525 590 3.24E-7 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 Gene3D G3DSA:2.30.38.10 324 415 4.5E-18 T 29-03-2018 Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS02990 1d8865578fa7f3457cdc5c906117a60f 618 Gene3D G3DSA:1.10.1200.10 521 602 5.3E-10 T 29-03-2018 Y880_RS17785 d006d07128f2a0d2e842b13b72ca0628 296 Pfam PF01136 Peptidase family U32 83 264 1.2E-11 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y880_RS24400 aca53035a451220b98e7c55f310279b2 302 Gene3D G3DSA:3.40.50.720 2 201 1.0E-27 T 29-03-2018 Y880_RS24400 aca53035a451220b98e7c55f310279b2 302 Pfam PF04321 RmlD substrate binding domain 3 296 5.5E-112 T 29-03-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Y880_RS24400 aca53035a451220b98e7c55f310279b2 302 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 295 1.0E-115 T 29-03-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Y880_RS24400 aca53035a451220b98e7c55f310279b2 302 SUPERFAMILY SSF51735 1 296 5.49E-96 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24400 aca53035a451220b98e7c55f310279b2 302 Gene3D G3DSA:3.90.25.10 202 276 5.8E-23 T 29-03-2018 Y880_RS26115 5f178c4ee5b8cedaa0741692f4ecddb9 197 Pfam PF01914 MarC family integral membrane protein 4 192 1.7E-42 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 SUPERFAMILY SSF102114 56 322 9.03E-68 T 29-03-2018 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 Gene3D G3DSA:3.20.20.70 50 317 6.5E-26 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 TIGRFAM TIGR00510 lipA: lipoyl synthase 38 321 8.6E-128 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 Pfam PF04055 Radical SAM superfamily 97 256 1.3E-14 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 SMART SM00729 90 299 1.1E-13 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 Hamap MF_00206 Lipoyl synthase [lipA]. 1 327 153.716 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 PIRSF PIRSF005963 6 327 2.2E-128 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y880_RS18225 1f8279358402aabda6a7f9ef61c39fc8 327 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 43 79 1.9E-7 T 29-03-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y880_RS11465 3a6cf4821e7da9a234806afedebbde72 155 Gene3D G3DSA:3.30.450.40 1 153 6.9E-16 T 29-03-2018 IPR029016 GAF domain-like Y880_RS11465 3a6cf4821e7da9a234806afedebbde72 155 Pfam PF13185 GAF domain 60 142 2.8E-7 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS11465 3a6cf4821e7da9a234806afedebbde72 155 SUPERFAMILY SSF55781 12 146 5.33E-13 T 29-03-2018 IPR029016 GAF domain-like Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 SUPERFAMILY SSF56935 53 793 2.9E-90 T 29-03-2018 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 71 792 8.4E-108 T 29-03-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 74 793 4.4E-129 T 29-03-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 Gene3D G3DSA:2.40.170.20 190 795 1.9E-62 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 179 1.1E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 SMART SM00965 1 49 1.4E-7 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 Gene3D G3DSA:2.170.130.10 70 189 1.3E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 Pfam PF07660 Secretin and TonB N terminus short domain 1 48 8.0E-7 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS03405 66d68884c42f2ec5dae3277f5e62b120 795 Pfam PF00593 TonB dependent receptor 283 792 1.6E-42 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Gene3D G3DSA:3.30.565.10 181 486 1.3E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Gene3D G3DSA:1.20.120.160 4 175 5.1E-29 T 29-03-2018 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SMART SM00073 8 105 3.4E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SUPERFAMILY SSF50341 486 618 5.89E-25 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Pfam PF01584 CheW-like domain 493 621 1.4E-18 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Gene3D G3DSA:3.40.50.2300 641 768 2.1E-31 T 29-03-2018 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 486 5.2E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SMART SM00448 646 760 4.4E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Pfam PF00072 Response regulator receiver domain 648 759 1.5E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SUPERFAMILY SSF55874 303 485 1.31E-36 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Pfam PF01627 Hpt domain 11 101 1.3E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SUPERFAMILY SSF52172 644 764 4.7E-31 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SUPERFAMILY SSF47226 8 118 3.14E-24 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 484 9.3E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 465 9.3E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 9.3E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Gene3D G3DSA:2.30.30.40 487 547 0.2 T 29-03-2018 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 Gene3D G3DSA:2.30.30.40 553 618 2.8E-15 T 29-03-2018 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SMART SM00260 479 618 3.0E-11 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS16675 9183c8c8159c0b139ed5b0e120e779c9 769 SMART SM00387 344 487 4.6E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 192 204 2.9E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 161 173 2.9E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 2.9E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 91 107 2.9E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 Hamap MF_01974 Methionine aminopeptidase [map]. 3 250 44.358 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 167 185 - T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 Gene3D G3DSA:3.90.230.10 2 261 4.6E-93 T 29-03-2018 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 249 1.7E-105 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 SUPERFAMILY SSF55920 4 254 1.44E-95 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS16440 94d89c7b2d7f9dda8fb9b688b18b02eb 261 Pfam PF00557 Metallopeptidase family M24 12 241 1.0E-59 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 Pfam PF08448 PAS fold 28 130 7.0E-6 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 198 2.5E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 SMART SM00421 151 208 4.0E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 Gene3D G3DSA:1.10.10.10 36 214 2.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 SUPERFAMILY SSF46894 145 212 6.46E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.0E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.0E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS03645 e8e1c7ef37af7a85c7bb683764af5a07 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.0E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS11260 76cc8bf61db0dd3e702d9bbf096a0609 109 Pfam PF05957 Bacterial protein of unknown function (DUF883) 17 109 8.1E-29 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB Y880_RS00680 7238ec6aa9d2007ecea00e69f9988e5b 431 Pfam PF05853 beta-keto acid cleavage enzyme 44 136 2.6E-6 T 29-03-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247|KEGG: 00600+2.3.1.24 Y880_RS00680 7238ec6aa9d2007ecea00e69f9988e5b 431 Gene3D G3DSA:3.20.20.70 2 404 4.0E-23 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS08425 1ea68629f88eab04ad138934df55d384 528 Pfam PF06980 Protein of unknown function (DUF1302) 5 527 2.1E-141 T 29-03-2018 IPR010727 Protein of unknown function DUF1302 Y880_RS25535 86aad7dca18f127a73b10c502bbf68fd 279 Gene3D G3DSA:1.10.3720.10 16 273 3.3E-32 T 29-03-2018 Y880_RS25535 86aad7dca18f127a73b10c502bbf68fd 279 SUPERFAMILY SSF161098 87 271 5.89E-39 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS25535 86aad7dca18f127a73b10c502bbf68fd 279 TIGRFAM TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein 5 271 3.2E-126 T 29-03-2018 IPR017784 ABC transporter, choline, permease protein Y880_RS25535 86aad7dca18f127a73b10c502bbf68fd 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 267 9.9E-28 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS26620 6ac651d8fafb568eeb029172d0065962 568 Gene3D G3DSA:1.10.760.10 320 568 7.4E-23 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26620 6ac651d8fafb568eeb029172d0065962 568 SUPERFAMILY SSF46626 452 499 6.12E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26620 6ac651d8fafb568eeb029172d0065962 568 SUPERFAMILY SSF46626 322 377 6.12E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS26620 6ac651d8fafb568eeb029172d0065962 568 SUPERFAMILY SSF46626 546 568 6.12E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 Pfam PF08402 TOBE domain 274 347 5.8E-16 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 Pfam PF00005 ABC transporter 24 165 4.6E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 Gene3D G3DSA:3.40.50.300 1 247 6.9E-71 T 29-03-2018 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 39 347 1.1E-107 T 29-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 Gene3D G3DSA:2.40.50.140 284 339 1.2E-6 T 29-03-2018 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 SUPERFAMILY SSF50331 241 347 2.45E-14 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 SMART SM00382 33 216 1.9E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 Gene3D G3DSA:2.40.50.100 248 283 0.0018 T 29-03-2018 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS28265 9890b7856684780552bfaed4acf9be74 349 SUPERFAMILY SSF52540 5 245 5.21E-83 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24170 624b09a51b744214f9b2c7fa90477e43 735 Gene3D G3DSA:3.30.70.100 612 709 2.9E-8 T 29-03-2018 Y880_RS24170 624b09a51b744214f9b2c7fa90477e43 735 SUPERFAMILY SSF82861 463 545 1.44E-13 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y880_RS24170 624b09a51b744214f9b2c7fa90477e43 735 Gene3D G3DSA:2.30.30.60 563 611 1.8E-10 T 29-03-2018 Y880_RS24170 624b09a51b744214f9b2c7fa90477e43 735 Pfam PF00924 Mechanosensitive ion channel 504 703 7.7E-39 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS24170 624b09a51b744214f9b2c7fa90477e43 735 SUPERFAMILY SSF82689 612 712 7.72E-12 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y880_RS24170 624b09a51b744214f9b2c7fa90477e43 735 SUPERFAMILY SSF50182 547 610 1.83E-12 T 29-03-2018 IPR010920 LSM domain Y880_RS13680 4a0bbaba02a8dfd986aa66cbbdfdf721 215 Gene3D G3DSA:3.20.20.70 8 210 2.1E-32 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS13680 4a0bbaba02a8dfd986aa66cbbdfdf721 215 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 38 47 - T 29-03-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y880_RS13680 4a0bbaba02a8dfd986aa66cbbdfdf721 215 SUPERFAMILY SSF51569 10 208 3.3E-66 T 29-03-2018 Y880_RS13680 4a0bbaba02a8dfd986aa66cbbdfdf721 215 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 207 1.0E-85 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y880_RS13680 4a0bbaba02a8dfd986aa66cbbdfdf721 215 Pfam PF01081 KDPG and KHG aldolase 10 201 1.6E-68 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y880_RS20065 a5da61b42104bd0fd0f8db6cdeb2e89d 350 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 328 6.3E-85 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS20065 a5da61b42104bd0fd0f8db6cdeb2e89d 350 SUPERFAMILY SSF51395 1 349 6.11E-122 T 29-03-2018 Y880_RS20065 a5da61b42104bd0fd0f8db6cdeb2e89d 350 Gene3D G3DSA:3.20.20.70 1 350 1.1E-125 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS06295 04777db8111623f594ed3e66d6212691 330 SMART SM00829 15 327 1.1E-8 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS06295 04777db8111623f594ed3e66d6212691 330 SUPERFAMILY SSF50129 8 147 2.74E-40 T 29-03-2018 IPR011032 GroES-like Y880_RS06295 04777db8111623f594ed3e66d6212691 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 90 3.9E-6 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS06295 04777db8111623f594ed3e66d6212691 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 5 329 3.0E-138 T 29-03-2018 IPR014188 Acrylyl-CoA reductase AcuI Y880_RS06295 04777db8111623f594ed3e66d6212691 330 Pfam PF00107 Zinc-binding dehydrogenase 162 271 2.7E-12 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS06295 04777db8111623f594ed3e66d6212691 330 Gene3D G3DSA:3.90.180.10 2 164 8.8E-39 T 29-03-2018 Y880_RS06295 04777db8111623f594ed3e66d6212691 330 SUPERFAMILY SSF51735 119 296 1.65E-37 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS06295 04777db8111623f594ed3e66d6212691 330 Gene3D G3DSA:3.40.50.720 165 274 6.3E-13 T 29-03-2018 Y880_RS23560 f60d184f1f8d564a7c7877b621eda059 378 Pfam PF00534 Glycosyl transferases group 1 185 335 5.1E-29 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS23560 f60d184f1f8d564a7c7877b621eda059 378 Pfam PF13439 Glycosyltransferase Family 4 41 172 3.9E-9 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS23560 f60d184f1f8d564a7c7877b621eda059 378 SUPERFAMILY SSF53756 8 365 3.4E-62 T 29-03-2018 Y880_RS23560 f60d184f1f8d564a7c7877b621eda059 378 Gene3D G3DSA:3.40.50.2000 185 354 7.3E-39 T 29-03-2018 Y880_RS23560 f60d184f1f8d564a7c7877b621eda059 378 Gene3D G3DSA:3.40.50.2000 6 184 8.2E-6 T 29-03-2018 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 11 459 1.5E-178 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 SMART SM00388 243 309 9.6E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 SUPERFAMILY SSF55874 298 455 6.29E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 Gene3D G3DSA:3.30.565.10 304 460 3.7E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 Gene3D G3DSA:1.10.287.130 233 303 2.2E-13 T 29-03-2018 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 457 1.8E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 SMART SM00304 189 242 2.2E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 309 2.3E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 1.4E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 1.4E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 1.4E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 SMART SM00387 352 463 2.1E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS04160 5d8107c4889b8fece5a7aaa881ef17af 481 SUPERFAMILY SSF47384 226 310 1.96E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 272 289 - T 29-03-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 SUPERFAMILY SSF52279 494 650 5.23E-60 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 SUPERFAMILY SSF52279 394 463 5.23E-60 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 49 349 1.0E-82 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 Pfam PF14310 Fibronectin type III-like domain 685 753 7.2E-22 T 29-03-2018 IPR026891 Fibronectin type III-like domain Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 Gene3D G3DSA:3.20.20.300 32 370 2.3E-98 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 Gene3D G3DSA:3.40.50.1700 379 647 2.4E-87 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 SMART SM01217 684 753 1.8E-30 T 29-03-2018 IPR026891 Fibronectin type III-like domain Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 119 138 2.9E-22 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 202 218 2.9E-22 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 165 181 2.9E-22 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 272 290 2.9E-22 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 100 116 2.9E-22 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 Gene3D G3DSA:2.60.40.10 648 763 3.3E-30 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 SUPERFAMILY SSF51445 32 392 2.32E-98 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS05700 dfbe14d4b37492fe7d97e0643b6ceb05 764 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 394 647 8.1E-61 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Y880_RS04740 fd5530b2e126c18fbde0ace121bac19f 155 Gene3D G3DSA:1.20.58.60 21 85 0.048 T 29-03-2018 Y880_RS04740 fd5530b2e126c18fbde0ace121bac19f 155 Gene3D G3DSA:1.10.287.1060 86 142 0.001 T 29-03-2018 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 Gene3D G3DSA:3.20.70.20 22 676 8.1E-151 T 29-03-2018 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 412 434 2.6E-18 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 197 216 2.6E-18 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 374 397 2.6E-18 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 336 347 2.6E-18 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 440 463 2.6E-18 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 528 555 2.6E-18 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 Pfam PF02867 Ribonucleotide reductase, barrel domain 122 670 4.0E-141 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 43 678 2.1E-182 T 29-03-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 SUPERFAMILY SSF51998 302 460 4.58E-177 T 29-03-2018 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 SUPERFAMILY SSF51998 35 239 4.58E-177 T 29-03-2018 Y880_RS26170 181b97a898e74d442569e39ff88bb558 734 SUPERFAMILY SSF51998 528 710 4.58E-177 T 29-03-2018 Y880_RS28485 73c3fc670ed040a57ace31b147910e8c 215 SUPERFAMILY SSF46689 7 68 2.19E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS28485 73c3fc670ed040a57ace31b147910e8c 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 3.2E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28485 73c3fc670ed040a57ace31b147910e8c 215 Pfam PF13972 Bacterial transcriptional repressor 60 203 1.2E-46 T 29-03-2018 IPR025722 Bacterial transcriptional repressor TetR Y880_RS28485 73c3fc670ed040a57ace31b147910e8c 215 Gene3D G3DSA:1.10.357.10 4 213 1.4E-34 T 29-03-2018 Y880_RS28485 73c3fc670ed040a57ace31b147910e8c 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.5E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS28485 73c3fc670ed040a57ace31b147910e8c 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.5E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 Pfam PF01938 TRAM domain 377 440 1.5E-5 T 29-03-2018 IPR002792 TRAM domain Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 7 437 6.7E-104 T 29-03-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 7 436 2.0E-178 T 29-03-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 6 439 61.878 T 29-03-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 Pfam PF00919 Uncharacterized protein family UPF0004 7 98 9.4E-21 T 29-03-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 143 163 - T 29-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 Gene3D G3DSA:3.80.30.20 136 379 1.1E-44 T 29-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 Gene3D G3DSA:2.40.50.140 380 440 3.2E-25 T 29-03-2018 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 Pfam PF04055 Radical SAM superfamily 145 322 7.6E-27 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 SUPERFAMILY SSF102114 109 370 3.53E-53 T 29-03-2018 Y880_RS01365 95434972f74fc1c699aff7f0a4c35f89 440 SMART SM00729 139 365 2.6E-51 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS17665 b50aecb61afc52e64612e45262ef5ee5 311 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 25 296 8.4E-69 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Y880_RS17665 b50aecb61afc52e64612e45262ef5ee5 311 Gene3D G3DSA:3.40.190.10 13 179 1.3E-30 T 29-03-2018 Y880_RS17665 b50aecb61afc52e64612e45262ef5ee5 311 SUPERFAMILY SSF53850 25 299 2.23E-69 T 29-03-2018 Y880_RS17665 b50aecb61afc52e64612e45262ef5ee5 311 Gene3D G3DSA:3.40.190.10 180 301 1.2E-23 T 29-03-2018 Y880_RS20245 f83125ffdc9cdab91aaf436fcb56e304 335 Pfam PF04338 Protein of unknown function, DUF481 128 335 1.5E-48 T 29-03-2018 IPR007433 Protein of unknown function DUF481 Y880_RS20245 f83125ffdc9cdab91aaf436fcb56e304 335 Gene3D G3DSA:2.30.30.100 23 71 1.2E-4 T 29-03-2018 Y880_RS11870 1d3b3897b42509dc3f21163117dd12a6 79 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 4 79 2.2E-30 T 29-03-2018 IPR021676 Protein of unknown function DUF3262 Y880_RS11870 1d3b3897b42509dc3f21163117dd12a6 79 Pfam PF11660 Protein of unknown function (DUF3262) 4 78 2.6E-25 T 29-03-2018 IPR021676 Protein of unknown function DUF3262 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 129 140 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 5 286 1.7E-143 T 29-03-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Pfam PF13247 4Fe-4S dicluster domain 88 184 1.5E-24 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Pfam PF12800 4Fe-4S binding domain 33 45 0.069 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:3.30.70.20 38 109 3.0E-21 T 29-03-2018 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:3.30.70.20 149 253 6.4E-22 T 29-03-2018 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:3.30.70.20 8 37 0.0013 T 29-03-2018 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:3.30.70.20 110 148 2.1E-16 T 29-03-2018 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 SUPERFAMILY SSF54862 24 265 2.62E-70 T 29-03-2018 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 PIRSF PIRSF036298 1 304 8.7E-161 T 29-03-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:1.20.5.480 254 287 4.6E-22 T 29-03-2018 Y880_RS22560 66a3929bc35c474baff9112bb9cb5239 309 Pfam PF09163 Formate dehydrogenase N, transmembrane 242 284 3.1E-23 T 29-03-2018 IPR015246 Formate dehydrogenase, transmembrane Y880_RS09900 120af671f5c0775c26609ca9e20b4287 333 Gene3D G3DSA:1.10.10.60 281 333 1.7E-5 T 29-03-2018 Y880_RS09900 120af671f5c0775c26609ca9e20b4287 333 Pfam PF12833 Helix-turn-helix domain 249 328 3.4E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09900 120af671f5c0775c26609ca9e20b4287 333 Gene3D G3DSA:1.10.10.60 134 280 2.1E-10 T 29-03-2018 Y880_RS09900 120af671f5c0775c26609ca9e20b4287 333 SUPERFAMILY SSF46689 225 275 1.21E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09900 120af671f5c0775c26609ca9e20b4287 333 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 278 322 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS09900 120af671f5c0775c26609ca9e20b4287 333 Pfam PF14525 AraC-binding-like domain 23 204 3.1E-36 T 29-03-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y880_RS09900 120af671f5c0775c26609ca9e20b4287 333 SMART SM00342 241 326 5.0E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 11 273 1.2E-88 T 29-03-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 Gene3D G3DSA:1.10.3140.10 9 144 5.0E-43 T 29-03-2018 Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 PIRSF PIRSF000331 7 492 1.7E-182 T 29-03-2018 IPR004925 HpaB/PvcC/4-BUDH Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 SUPERFAMILY SSF56645 9 274 9.94E-74 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 281 480 9.1E-55 T 29-03-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 PIRSF PIRSF500125 1 500 4.3E-235 T 29-03-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 Gene3D G3DSA:1.20.140.10 288 484 3.0E-55 T 29-03-2018 Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 Gene3D G3DSA:2.40.110.10 145 275 1.2E-12 T 29-03-2018 Y880_RS08620 d99c137b4b4f23943d4e349655598322 500 SUPERFAMILY SSF47203 265 484 2.72E-50 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS27465 7b0309e4b193a973e860c3ccbbec3ab6 196 SUPERFAMILY SSF54211 7 121 1.14E-37 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS27465 7b0309e4b193a973e860c3ccbbec3ab6 196 SUPERFAMILY SSF54980 127 195 9.35E-11 T 29-03-2018 IPR035647 EF-G domain III/V-like Y880_RS27465 7b0309e4b193a973e860c3ccbbec3ab6 196 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 1.0E-26 T 29-03-2018 IPR001498 Impact, N-terminal Y880_RS27465 7b0309e4b193a973e860c3ccbbec3ab6 196 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 71 100 - T 29-03-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site Y880_RS27465 7b0309e4b193a973e860c3ccbbec3ab6 196 Gene3D G3DSA:3.30.70.240 127 190 5.9E-13 T 29-03-2018 Y880_RS27465 7b0309e4b193a973e860c3ccbbec3ab6 196 Pfam PF09186 Domain of unknown function (DUF1949) 133 188 2.0E-11 T 29-03-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal Y880_RS27465 7b0309e4b193a973e860c3ccbbec3ab6 196 Gene3D G3DSA:3.30.230.30 1 125 1.6E-37 T 29-03-2018 IPR001498 Impact, N-terminal Y880_RS08930 1f8bb64488d42f33e94ea7aeb2f7579d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 30 52 6.5E-6 T 29-03-2018 Y880_RS08930 1f8bb64488d42f33e94ea7aeb2f7579d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 162 177 6.5E-6 T 29-03-2018 Y880_RS08930 1f8bb64488d42f33e94ea7aeb2f7579d 432 SUPERFAMILY SSF51905 346 399 6.47E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08930 1f8bb64488d42f33e94ea7aeb2f7579d 432 SUPERFAMILY SSF51905 29 254 6.47E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08930 1f8bb64488d42f33e94ea7aeb2f7579d 432 Pfam PF01266 FAD dependent oxidoreductase 30 384 4.6E-38 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS08930 1f8bb64488d42f33e94ea7aeb2f7579d 432 Gene3D G3DSA:3.50.50.60 19 405 3.3E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 SMART SM00448 1 112 7.1E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 SUPERFAMILY SSF52172 1 118 3.42E-36 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 216 3.7E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 Gene3D G3DSA:1.10.10.10 123 221 4.5E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 Pfam PF00072 Response regulator receiver domain 4 112 1.5E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 SUPERFAMILY SSF46894 123 217 2.83E-25 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 SMART SM00862 146 217 2.9E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS10710 10abdb2737a7e3547d6dbebb73c00631 223 Gene3D G3DSA:3.40.50.2300 1 122 3.1E-31 T 29-03-2018 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 Hamap MF_00930 Transcription elongation factor GreB [greB]. 10 165 52.946 T 29-03-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 SUPERFAMILY SSF46557 13 85 1.26E-24 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 Gene3D G3DSA:3.10.50.30 85 165 6.1E-25 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 SUPERFAMILY SSF54534 89 164 1.57E-22 T 29-03-2018 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 Hamap MF_00105 Transcription elongation factor GreA [greA]. 11 163 28.719 T 29-03-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 Pfam PF03449 Transcription elongation factor, N-terminal 14 83 9.8E-25 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 12 165 5.3E-85 T 29-03-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 PIRSF PIRSF006092 9 166 3.9E-48 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 92 164 5.2E-24 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 Gene3D G3DSA:1.10.287.180 12 84 2.5E-27 T 29-03-2018 Y880_RS12265 adb0da690e71f44b5e2c17a0c4500663 168 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 26 57 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Y880_RS15865 ad1060c33f6178afa57079935796a7f7 391 Gene3D G3DSA:3.40.50.1110 66 226 0.0051 T 29-03-2018 Y880_RS15865 ad1060c33f6178afa57079935796a7f7 391 Gene3D G3DSA:3.40.50.1110 282 375 0.29 T 29-03-2018 Y880_RS15865 ad1060c33f6178afa57079935796a7f7 391 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 85 355 7.3E-100 T 29-03-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain Y880_RS24040 2dd24b7656b004ec24b6b92eaf4ea701 322 Gene3D G3DSA:3.40.190.10 27 169 1.1E-15 T 29-03-2018 Y880_RS24040 2dd24b7656b004ec24b6b92eaf4ea701 322 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 34 301 4.0E-66 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Y880_RS24040 2dd24b7656b004ec24b6b92eaf4ea701 322 SUPERFAMILY SSF53850 28 317 1.56E-74 T 29-03-2018 Y880_RS24040 2dd24b7656b004ec24b6b92eaf4ea701 322 Gene3D G3DSA:3.40.190.10 170 319 1.9E-27 T 29-03-2018 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 SUPERFAMILY SSF48029 12 122 8.24E-24 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 Pfam PF14841 FliG middle domain 120 193 5.0E-24 T 29-03-2018 IPR032779 Flagellar motor switch protein FliG, middle domain Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 7 336 2.3E-102 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 SUPERFAMILY SSF48029 119 330 2.49E-69 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 Gene3D G3DSA:1.10.220.30 200 338 8.5E-35 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 Gene3D G3DSA:1.10.220.30 78 194 4.6E-19 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 Gene3D G3DSA:1.10.220.30 2 77 7.8E-11 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 200 225 3.6E-65 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 39 65 3.6E-65 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 231 251 3.6E-65 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 253 273 3.6E-65 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 10 26 3.6E-65 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 277 303 3.6E-65 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 119 142 3.6E-65 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 PIRSF PIRSF003161 5 338 4.3E-118 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 Pfam PF01706 FliG C-terminal domain 223 329 5.2E-41 T 29-03-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal Y880_RS02370 088b736bb2473edf83917cc158a2e0b6 338 Pfam PF14842 FliG N-terminal domain 9 108 1.1E-33 T 29-03-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 Gene3D G3DSA:3.40.50.1370 9 176 2.2E-60 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 18 319 5.2E-91 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 Gene3D G3DSA:3.40.50.1370 177 321 3.8E-45 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 170 316 1.0E-23 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 17 321 41.802 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 92 101 3.4E-31 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 149 166 3.4E-31 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 54 76 3.4E-31 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 235 244 3.4E-31 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 300 314 3.4E-31 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 276 281 3.4E-31 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 150 161 7.7E-18 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 272 281 7.7E-18 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 284 307 7.7E-18 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 64 83 7.7E-18 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 18 162 2.2E-41 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 SUPERFAMILY SSF53671 17 321 3.8E-95 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS28670 7b4501cd414851280dfb8d473ca15a82 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 64 71 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS21775 df662a606a566c829bb2e20d50230723 82 Pfam PF05356 Phage Coat protein B 1 82 1.0E-52 T 29-03-2018 IPR008020 Capsid protein G8P GO:0019028 Y880_RS21775 df662a606a566c829bb2e20d50230723 82 SUPERFAMILY SSF57987 37 82 2.01E-24 T 29-03-2018 Y880_RS21775 df662a606a566c829bb2e20d50230723 82 ProDom PD059964 COAT CAPSID B PA0723 3D-STRUCTURE MAJOR TRANSMEMBRANE MEMBRANE DIRECT PRECURSOR 1 82 3.0E-40 T 29-03-2018 IPR008020 Capsid protein G8P GO:0019028 Y880_RS21775 df662a606a566c829bb2e20d50230723 82 Gene3D G3DSA:1.20.5.230 40 81 1.3E-22 T 29-03-2018 Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 332 1.4E-28 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 428 447 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 SUPERFAMILY SSF52518 7 182 2.45E-55 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 SUPERFAMILY SSF52518 369 547 1.32E-56 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 SUPERFAMILY SSF52467 160 356 3.97E-38 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 Gene3D G3DSA:3.40.50.970 348 551 2.1E-42 T 29-03-2018 Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 170 1.1E-54 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 Gene3D G3DSA:3.40.50.1220 194 347 2.4E-36 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 Gene3D G3DSA:3.40.50.970 1 193 5.3E-53 T 29-03-2018 Y880_RS07335 5027e98d538130bc748e5b548347e36c 552 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 537 3.4E-42 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y880_RS26940 428a56282d04345de3fa5a5e2386d93c 180 Gene3D G3DSA:2.160.10.10 1 178 1.4E-38 T 29-03-2018 Y880_RS26940 428a56282d04345de3fa5a5e2386d93c 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 95 128 3.0E-6 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS26940 428a56282d04345de3fa5a5e2386d93c 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 45 1.3E-5 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS26940 428a56282d04345de3fa5a5e2386d93c 180 SUPERFAMILY SSF51161 3 173 6.38E-44 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS10450 2cadb795fc1c7177bea8a4875cba16d2 101 Pfam PF04077 DsrH like protein 10 97 2.8E-23 T 29-03-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 Y880_RS10450 2cadb795fc1c7177bea8a4875cba16d2 101 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 5 100 1.1E-28 T 29-03-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 Y880_RS10450 2cadb795fc1c7177bea8a4875cba16d2 101 Gene3D G3DSA:3.40.1260.10 4 97 2.1E-18 T 29-03-2018 Y880_RS10450 2cadb795fc1c7177bea8a4875cba16d2 101 SUPERFAMILY SSF75169 4 100 3.39E-24 T 29-03-2018 IPR027396 DsrEFH-like Y880_RS27790 7482150c5ba5600b4cfe7029ad671fd7 271 SUPERFAMILY SSF51658 5 270 2.33E-61 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS27790 7482150c5ba5600b4cfe7029ad671fd7 271 Gene3D G3DSA:3.20.20.150 3 271 1.5E-32 T 29-03-2018 Y880_RS27790 7482150c5ba5600b4cfe7029ad671fd7 271 Pfam PF01261 Xylose isomerase-like TIM barrel 22 221 6.2E-16 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS29825 a5031c64a439e5dd2fcc17c1023505a4 167 Pfam PF04985 Phage tail tube protein FII 3 166 6.1E-59 T 29-03-2018 IPR006498 Tail tube protein Y880_RS29825 a5031c64a439e5dd2fcc17c1023505a4 167 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 1 167 1.4E-78 T 29-03-2018 IPR006498 Tail tube protein Y880_RS04525 a46e8abbcdb80da723157073c1ad1a22 569 SUPERFAMILY SSF53474 50 62 1.09E-8 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS04525 a46e8abbcdb80da723157073c1ad1a22 569 SUPERFAMILY SSF53474 190 340 1.09E-8 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS04525 a46e8abbcdb80da723157073c1ad1a22 569 Gene3D G3DSA:3.40.50.1820 43 553 9.2E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS18890 60a59e078d60b74cacd914ddebac043e 268 SUPERFAMILY SSF51621 3 254 2.13E-84 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS18890 60a59e078d60b74cacd914ddebac043e 268 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 254 1.8E-129 T 29-03-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 Y880_RS18890 60a59e078d60b74cacd914ddebac043e 268 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 243 1.6E-61 T 29-03-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Y880_RS18890 60a59e078d60b74cacd914ddebac043e 268 Gene3D G3DSA:3.20.20.60 3 251 3.4E-51 T 29-03-2018 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 SUPERFAMILY SSF56645 1 245 7.59E-57 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 3.3E-44 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 220 3.5E-15 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 SUPERFAMILY SSF47203 232 385 9.18E-53 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 123 4.6E-15 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 Gene3D G3DSA:2.40.110.10 129 223 9.9E-29 T 29-03-2018 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 Gene3D G3DSA:1.10.540.10 1 128 2.0E-25 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS08335 7e37a3fd93bc505ea09d89f3ab8e7caf 390 Gene3D G3DSA:1.20.140.10 224 390 5.0E-53 T 29-03-2018 Y880_RS15990 a34ea27bc3bb92e18efb395e5b1cb43b 392 Pfam PF07690 Major Facilitator Superfamily 15 348 5.6E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS15990 a34ea27bc3bb92e18efb395e5b1cb43b 392 Gene3D G3DSA:1.20.1250.20 2 189 1.1E-29 T 29-03-2018 Y880_RS15990 a34ea27bc3bb92e18efb395e5b1cb43b 392 SUPERFAMILY SSF103473 3 385 2.22E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS15990 a34ea27bc3bb92e18efb395e5b1cb43b 392 Gene3D G3DSA:1.20.1250.20 196 391 3.7E-13 T 29-03-2018 Y880_RS15990 a34ea27bc3bb92e18efb395e5b1cb43b 392 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 380 9.4E-90 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 Y880_RS00085 b43dbf974558f0034b705d3feeab9234 197 Gene3D G3DSA:3.30.1360.100 102 188 1.1E-12 T 29-03-2018 IPR023229 Type II secretion system protein M, periplasmic domain Y880_RS00085 b43dbf974558f0034b705d3feeab9234 197 Pfam PF04612 Type II secretion system (T2SS), protein M 24 190 1.8E-47 T 29-03-2018 IPR007690 Type II secretion system, protein M GO:0009306 Y880_RS18090 1eeb7634d68722b0ad76e480411b2166 361 Pfam PF12706 Beta-lactamase superfamily domain 102 300 2.5E-42 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS18090 1eeb7634d68722b0ad76e480411b2166 361 Gene3D G3DSA:3.60.15.10 44 356 8.8E-55 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS18090 1eeb7634d68722b0ad76e480411b2166 361 SUPERFAMILY SSF56281 84 306 1.49E-31 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS18090 1eeb7634d68722b0ad76e480411b2166 361 PIRSF PIRSF038896 24 343 7.6E-98 T 29-03-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 1.2E-31 T 29-03-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 346 353 - T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 184 486 1.3E-127 T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 PRINTS PR00481 Cytosol aminopeptidase signature 320 341 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 PRINTS PR00481 Cytosol aminopeptidase signature 342 362 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 PRINTS PR00481 Cytosol aminopeptidase signature 261 278 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 PRINTS PR00481 Cytosol aminopeptidase signature 370 385 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 PRINTS PR00481 Cytosol aminopeptidase signature 283 304 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 Gene3D G3DSA:3.40.220.10 1 160 4.6E-35 T 29-03-2018 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 495 41.371 T 29-03-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 Gene3D G3DSA:3.40.630.10 168 495 5.4E-140 T 29-03-2018 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 SUPERFAMILY SSF53187 177 493 1.35E-126 T 29-03-2018 Y880_RS17365 dd23eda521db656916acd9ef9d442c18 495 SUPERFAMILY SSF52949 1 182 3.12E-44 T 29-03-2018 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 Gene3D G3DSA:3.40.190.10 175 262 3.2E-22 T 29-03-2018 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.0E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.0E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.0E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 Pfam PF03466 LysR substrate binding domain 87 284 2.4E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 SUPERFAMILY SSF53850 87 284 9.15E-33 T 29-03-2018 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 3.1E-23 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 SUPERFAMILY SSF46785 1 84 9.54E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 5 284 3.6E-122 T 29-03-2018 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 Gene3D G3DSA:3.40.190.10 89 174 9.2E-16 T 29-03-2018 Y880_RS03440 303808c7075252c6082e1bc8fd3de523 286 Gene3D G3DSA:1.10.10.10 1 88 8.5E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09590 668246e173fcdf56fbeb855b40c642cb 127 Gene3D G3DSA:2.40.50.100 2 126 5.2E-38 T 29-03-2018 Y880_RS09590 668246e173fcdf56fbeb855b40c642cb 127 Pfam PF01597 Glycine cleavage H-protein 4 122 3.7E-37 T 29-03-2018 IPR033753 Glycine cleavage system H-protein/Simiate Y880_RS09590 668246e173fcdf56fbeb855b40c642cb 127 SUPERFAMILY SSF51230 2 122 8.11E-36 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS09590 668246e173fcdf56fbeb855b40c642cb 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 122 38.365 T 29-03-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y880_RS09590 668246e173fcdf56fbeb855b40c642cb 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 123 8.5E-42 T 29-03-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y880_RS19085 1f356af0989131942d11999623015f46 110 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 7.5E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS19085 1f356af0989131942d11999623015f46 110 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 7.5E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS19085 1f356af0989131942d11999623015f46 110 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 87 5.0E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS19085 1f356af0989131942d11999623015f46 110 SUPERFAMILY SSF46785 19 91 4.07E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19085 1f356af0989131942d11999623015f46 110 SMART SM00345 28 87 2.7E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS19085 1f356af0989131942d11999623015f46 110 Gene3D G3DSA:1.10.10.10 11 89 8.2E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22120 7307f4201708fed743e1e4b620d7ec3e 162 SUPERFAMILY SSF55083 3 157 9.68E-54 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS22120 7307f4201708fed743e1e4b620d7ec3e 162 Gene3D G3DSA:3.30.70.560 1 159 8.9E-55 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS22120 7307f4201708fed743e1e4b620d7ec3e 162 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS22120 7307f4201708fed743e1e4b620d7ec3e 162 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 134 5.0E-36 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS22120 7307f4201708fed743e1e4b620d7ec3e 162 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 134 1.5E-43 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 SUPERFAMILY SSF51905 282 409 2.47E-6 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 SUPERFAMILY SSF51905 192 242 2.47E-6 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 10 357 9.1E-121 T 29-03-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 Gene3D G3DSA:3.50.50.60 209 403 3.5E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 7.5E-5 T 29-03-2018 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 161 179 7.5E-5 T 29-03-2018 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 209 227 7.5E-5 T 29-03-2018 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 SUPERFAMILY SSF51905 11 258 1.05E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS09285 94db54dac909ae0eb54e675c93e2bf4e 443 Gene3D G3DSA:3.50.50.60 11 208 2.2E-12 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS26430 3e5ee9006ddd17a25803e68c923a6fb7 244 Pfam PF16715 Cyclodipeptide synthase 35 193 2.2E-13 T 29-03-2018 IPR030903 Cyclodileucine synthase GO:0016755 Y880_RS26430 3e5ee9006ddd17a25803e68c923a6fb7 244 TIGRFAM TIGR04539 tRNA_cyclodipep: tRNA-dependent cyclodipeptide synthase 22 238 1.6E-50 T 29-03-2018 IPR030903 Cyclodileucine synthase GO:0016755 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 Gene3D G3DSA:3.90.230.10 1 259 2.7E-82 T 29-03-2018 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 1.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 1.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 1.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 1.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 1.0E-94 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 SUPERFAMILY SSF55920 1 252 6.02E-88 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 Hamap MF_01974 Methionine aminopeptidase [map]. 1 248 39.027 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 Pfam PF00557 Metallopeptidase family M24 10 239 1.7E-51 T 29-03-2018 IPR000994 Peptidase M24 Y880_RS11210 cfdc7957b16c9b7eeda00a9bcc83f431 260 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 220 2.4E-69 T 29-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 SUPERFAMILY SSF69065 4 158 9.07E-50 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 Pfam PF14622 Ribonuclease-III-like 18 139 6.9E-35 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 Pfam PF00035 Double-stranded RNA binding motif 155 219 8.4E-8 T 29-03-2018 IPR014720 Double-stranded RNA-binding domain Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 SUPERFAMILY SSF54768 108 226 5.79E-26 T 29-03-2018 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 SMART SM00535 20 148 1.8E-59 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 30.116 T 29-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 SMART SM00358 155 223 7.1E-16 T 29-03-2018 IPR014720 Double-stranded RNA-binding domain Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 Gene3D G3DSA:3.30.160.20 150 226 2.6E-16 T 29-03-2018 Y880_RS00465 8a85b935615972fe6aafaebefd54bc09 229 Gene3D G3DSA:1.10.1520.10 1 149 8.8E-45 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Y880_RS01775 89bf9190cc523f48e3ce8f3728b10e80 301 Pfam PF00753 Metallo-beta-lactamase superfamily 18 221 2.0E-26 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS01775 89bf9190cc523f48e3ce8f3728b10e80 301 SUPERFAMILY SSF56281 14 269 7.6E-53 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS01775 89bf9190cc523f48e3ce8f3728b10e80 301 Gene3D G3DSA:3.60.15.10 3 274 5.2E-35 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS01775 89bf9190cc523f48e3ce8f3728b10e80 301 SMART SM00849 21 221 2.0E-26 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 Pfam PF13558 Putative exonuclease SbcCD, C subunit 952 1040 6.9E-16 T 29-03-2018 Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 Gene3D G3DSA:3.40.50.300 12 440 2.5E-12 T 29-03-2018 Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 Pfam PF13555 P-loop containing region of AAA domain 15 71 2.0E-19 T 29-03-2018 Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 SUPERFAMILY SSF52540 14 118 2.26E-10 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 SUPERFAMILY SSF52540 218 418 2.26E-10 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 Gene3D G3DSA:1.20.120.20 667 884 9.7E-6 T 29-03-2018 Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 SUPERFAMILY SSF52540 135 177 4.88E-12 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 SUPERFAMILY SSF52540 15 106 4.88E-12 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00760 0f766bc394b9d9ea4dd12ded4b45644b 1101 SUPERFAMILY SSF52540 967 1062 4.88E-12 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03575 21e58aaaaa9c80db9fab2bf3cd7a899e 370 Gene3D G3DSA:3.20.20.70 1 369 9.9E-124 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS03575 21e58aaaaa9c80db9fab2bf3cd7a899e 370 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 342 1.9E-89 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS03575 21e58aaaaa9c80db9fab2bf3cd7a899e 370 SUPERFAMILY SSF51395 2 365 1.53E-121 T 29-03-2018 Y880_RS04855 894d50c64b7d584ce0341afb99288eba 454 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 253 268 - T 29-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y880_RS04855 894d50c64b7d584ce0341afb99288eba 454 Gene3D G3DSA:3.10.20.70 5 115 7.3E-12 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS04855 894d50c64b7d584ce0341afb99288eba 454 Gene3D G3DSA:3.30.590.10 116 454 6.5E-98 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y880_RS04855 894d50c64b7d584ce0341afb99288eba 454 SUPERFAMILY SSF54368 9 112 7.59E-7 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS04855 894d50c64b7d584ce0341afb99288eba 454 SMART SM01230 117 372 1.7E-97 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS04855 894d50c64b7d584ce0341afb99288eba 454 SUPERFAMILY SSF55931 119 451 6.08E-104 T 29-03-2018 Y880_RS04855 894d50c64b7d584ce0341afb99288eba 454 Pfam PF00120 Glutamine synthetase, catalytic domain 118 450 7.3E-107 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 101 112 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 18 139 1.2E-52 T 29-03-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 Gene3D G3DSA:3.30.70.20 24 72 1.2E-6 T 29-03-2018 Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 9 152 27.518 T 29-03-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 Pfam PF12838 4Fe-4S dicluster domain 61 115 1.3E-11 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 SUPERFAMILY SSF54862 35 162 4.18E-29 T 29-03-2018 Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 Gene3D G3DSA:3.30.70.20 73 105 5.0E-14 T 29-03-2018 Y880_RS10640 9c25c3347707446e91623b59f71861ef 182 Gene3D G3DSA:3.30.70.20 106 172 4.2E-8 T 29-03-2018 Y880_RS17530 a179c33228ac1750a41074587eb10f09 315 Gene3D G3DSA:3.30.1780.10 4 138 4.7E-28 T 29-03-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Y880_RS17530 a179c33228ac1750a41074587eb10f09 315 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 7 309 2.0E-36 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y880_RS17530 a179c33228ac1750a41074587eb10f09 315 SUPERFAMILY SSF51735 6 313 3.64E-69 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS17530 a179c33228ac1750a41074587eb10f09 315 PIRSF PIRSF001439 1 315 3.0E-53 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y880_RS17530 a179c33228ac1750a41074587eb10f09 315 Gene3D G3DSA:3.40.50.720 139 296 6.2E-21 T 29-03-2018 Y880_RS09000 3ac67f33145661bc9414a466e546b05b 186 SUPERFAMILY SSF69118 1 183 1.14E-46 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS09000 3ac67f33145661bc9414a466e546b05b 186 Gene3D G3DSA:1.20.5.810 10 42 5.4E-12 T 29-03-2018 Y880_RS09000 3ac67f33145661bc9414a466e546b05b 186 Pfam PF02627 Carboxymuconolactone decarboxylase family 43 108 3.2E-10 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS09000 3ac67f33145661bc9414a466e546b05b 186 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 63 105 7.5E-9 T 29-03-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS09000 3ac67f33145661bc9414a466e546b05b 186 Gene3D G3DSA:1.20.1290.10 43 180 2.9E-23 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SUPERFAMILY SSF52821 375 524 1.96E-31 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Pfam PF00581 Rhodanese-like domain 132 225 7.0E-9 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Pfam PF00581 Rhodanese-like domain 379 468 1.6E-8 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Pfam PF00581 Rhodanese-like domain 279 352 1.8E-8 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Pfam PF00581 Rhodanese-like domain 16 101 3.4E-9 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Gene3D G3DSA:3.40.250.10 246 356 5.0E-18 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Gene3D G3DSA:3.40.250.10 374 480 3.0E-19 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Gene3D G3DSA:3.40.250.10 8 120 6.0E-20 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SUPERFAMILY SSF52821 14 121 4.06E-25 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SMART SM00450 131 229 7.7E-7 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SMART SM00450 377 472 1.5E-5 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SMART SM00450 8 105 1.2E-14 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SMART SM00450 267 359 6.1E-7 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SUPERFAMILY SSF52821 254 352 8.64E-24 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 ProSitePatterns PS00380 Rhodanese signature 1. 402 413 - T 29-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 SUPERFAMILY SSF52821 106 235 1.7E-29 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS10425 da39d352fa6b049751f2965f70bec13f 527 Gene3D G3DSA:3.40.250.10 121 245 1.7E-17 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS07715 3f2bd09189347b09838a98349e6410d4 245 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 197 222 3.7E-7 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Y880_RS07715 3f2bd09189347b09838a98349e6410d4 245 Pfam PF01411 tRNA synthetases class II (A) 14 67 9.4E-9 T 29-03-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Y880_RS07715 3f2bd09189347b09838a98349e6410d4 245 Gene3D G3DSA:3.30.980.10 102 232 3.0E-21 T 29-03-2018 Y880_RS07715 3f2bd09189347b09838a98349e6410d4 245 SUPERFAMILY SSF50447 2 69 1.17E-12 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS07715 3f2bd09189347b09838a98349e6410d4 245 SUPERFAMILY SSF55186 105 227 6.15E-25 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 Gene3D G3DSA:3.40.50.150 167 491 7.5E-64 T 29-03-2018 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 169 185 3.0E-20 T 29-03-2018 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 193 207 3.0E-20 T 29-03-2018 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 297 309 3.0E-20 T 29-03-2018 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 327 351 3.0E-20 T 29-03-2018 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 300 306 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 Pfam PF02384 N-6 DNA Methylase 147 497 5.3E-64 T 29-03-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 SUPERFAMILY SSF53335 5 527 3.93E-116 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS00840 664caf4bf698f9e218e6ac083a98a5ce 527 Pfam PF12161 HsdM N-terminal domain 6 140 1.9E-16 T 29-03-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Y880_RS13200 212c544d287f7bafce0a4d924f35e74d 421 Pfam PF03573 outer membrane porin, OprD family 28 419 7.4E-166 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS13200 212c544d287f7bafce0a4d924f35e74d 421 Gene3D G3DSA:2.40.160.10 1 421 8.2E-134 T 29-03-2018 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 9.0E-106 T 29-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 SUPERFAMILY SSF52313 6 231 4.45E-96 T 29-03-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 Pfam PF00318 Ribosomal protein S2 9 224 8.7E-95 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 29-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.671 T 29-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 175 186 1.2E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 37 46 1.2E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 87 104 1.2E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 6 24 1.2E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 158 175 1.2E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 196 210 1.2E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 29-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Y880_RS16435 861a105354ee3f8f00326bcc74513910 246 Gene3D G3DSA:3.40.50.10490 5 245 6.3E-94 T 29-03-2018 Y880_RS03780 6362c290b9d62a0bd5b88fa5a0899f83 371 Gene3D G3DSA:2.40.50.100 33 93 7.2E-6 T 29-03-2018 Y880_RS03780 6362c290b9d62a0bd5b88fa5a0899f83 371 Gene3D G3DSA:2.40.50.100 162 369 3.2E-6 T 29-03-2018 Y880_RS03780 6362c290b9d62a0bd5b88fa5a0899f83 371 SUPERFAMILY SSF111369 51 260 1.26E-17 T 29-03-2018 Y880_RS03780 6362c290b9d62a0bd5b88fa5a0899f83 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 357 7.3E-60 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS03780 6362c290b9d62a0bd5b88fa5a0899f83 371 Gene3D G3DSA:1.10.287.470 101 159 7.2E-7 T 29-03-2018 Y880_RS03780 6362c290b9d62a0bd5b88fa5a0899f83 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 261 7.5E-15 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS17775 03e9a400ec6a7e550352ac97e60219be 520 SUPERFAMILY SSF56300 137 517 7.78E-45 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS17775 03e9a400ec6a7e550352ac97e60219be 520 Gene3D G3DSA:3.60.21.10 136 520 2.2E-36 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS17775 03e9a400ec6a7e550352ac97e60219be 520 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 42 128 1.0E-17 T 29-03-2018 IPR032093 Phospholipase D, N-terminal Y880_RS17775 03e9a400ec6a7e550352ac97e60219be 520 Pfam PF09423 PhoD-like phosphatase 148 501 1.1E-87 T 29-03-2018 IPR018946 Alkaline phosphatase D-related Y880_RS02805 1a8ca412ae9857ba92e114f4b8d27510 296 Pfam PF03466 LysR substrate binding domain 92 292 6.8E-33 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS02805 1a8ca412ae9857ba92e114f4b8d27510 296 Gene3D G3DSA:3.40.190.10 173 261 8.3E-18 T 29-03-2018 Y880_RS02805 1a8ca412ae9857ba92e114f4b8d27510 296 Gene3D G3DSA:1.10.10.10 5 93 9.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02805 1a8ca412ae9857ba92e114f4b8d27510 296 Gene3D G3DSA:3.40.190.10 94 172 2.7E-18 T 29-03-2018 Y880_RS02805 1a8ca412ae9857ba92e114f4b8d27510 296 SUPERFAMILY SSF53850 92 294 8.69E-34 T 29-03-2018 Y880_RS02805 1a8ca412ae9857ba92e114f4b8d27510 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.1E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02805 1a8ca412ae9857ba92e114f4b8d27510 296 SUPERFAMILY SSF46785 8 113 1.02E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29660 776f1c6d456ff9bceee52099c22f4bba 283 Gene3D G3DSA:3.60.21.10 1 281 2.7E-49 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS29660 776f1c6d456ff9bceee52099c22f4bba 283 SUPERFAMILY SSF56300 1 257 2.06E-57 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS29660 776f1c6d456ff9bceee52099c22f4bba 283 Pfam PF00149 Calcineurin-like phosphoesterase 2 150 6.0E-13 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y880_RS29660 776f1c6d456ff9bceee52099c22f4bba 283 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 259 4.6E-96 T 29-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Y880_RS29660 776f1c6d456ff9bceee52099c22f4bba 283 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 272 49.877 T 29-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Y880_RS29660 776f1c6d456ff9bceee52099c22f4bba 283 PIRSF PIRSF000903 1 276 7.9E-121 T 29-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Y880_RS15435 a179578addc1280a43e92590a28eb4ab 76 PIRSF PIRSF006169 1 75 3.4E-29 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 Y880_RS15435 a179578addc1280a43e92590a28eb4ab 76 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 69 24.212 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 Y880_RS15435 a179578addc1280a43e92590a28eb4ab 76 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 63 3.0E-30 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 Y880_RS15435 a179578addc1280a43e92590a28eb4ab 76 SUPERFAMILY SSF118001 1 74 3.79E-26 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 Y880_RS15435 a179578addc1280a43e92590a28eb4ab 76 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 67 2.9E-25 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 Y880_RS15435 a179578addc1280a43e92590a28eb4ab 76 Gene3D G3DSA:1.10.10.610 1 70 4.8E-31 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 Y880_RS26145 00ccd95a8ab3be873e1dbfe22cd170fa 215 Gene3D G3DSA:3.40.50.300 19 84 2.0E-11 T 29-03-2018 Y880_RS26145 00ccd95a8ab3be873e1dbfe22cd170fa 215 SUPERFAMILY SSF52540 22 202 4.23E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS26145 00ccd95a8ab3be873e1dbfe22cd170fa 215 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 19 202 26.997 T 29-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Y880_RS26145 00ccd95a8ab3be873e1dbfe22cd170fa 215 Pfam PF01926 50S ribosome-binding GTPase 33 150 3.6E-17 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS26145 00ccd95a8ab3be873e1dbfe22cd170fa 215 Gene3D G3DSA:3.40.50.300 85 215 2.9E-11 T 29-03-2018 Y880_RS26145 00ccd95a8ab3be873e1dbfe22cd170fa 215 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 14 198 5.6E-69 T 29-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 SUPERFAMILY SSF46894 133 224 4.54E-21 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 SUPERFAMILY SSF52172 1 123 6.83E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 Gene3D G3DSA:3.40.50.2300 1 118 2.3E-31 T 29-03-2018 Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 1.3E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 SMART SM00862 148 224 4.4E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 Pfam PF00072 Response regulator receiver domain 4 112 3.8E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 Gene3D G3DSA:1.10.10.10 119 229 1.3E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS28995 fd71bdcf405927820c403377ffb26ac8 229 SMART SM00448 2 112 5.1E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22680 876dee3149c1b10cd6d0ce88bf97d77c 284 SUPERFAMILY SSF103481 182 282 1.83E-15 T 29-03-2018 Y880_RS22680 876dee3149c1b10cd6d0ce88bf97d77c 284 Pfam PF00892 EamA-like transporter family 151 279 3.0E-13 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS22680 876dee3149c1b10cd6d0ce88bf97d77c 284 Pfam PF00892 EamA-like transporter family 8 138 9.2E-17 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS22680 876dee3149c1b10cd6d0ce88bf97d77c 284 SUPERFAMILY SSF103481 42 139 5.1E-13 T 29-03-2018 Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 Gene3D G3DSA:3.30.450.80 1 159 2.6E-14 T 29-03-2018 Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 Gene3D G3DSA:1.10.10.10 160 221 9.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 180 2.3E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 208 2.3E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 196 2.3E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 SUPERFAMILY SSF46894 148 219 2.07E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 SMART SM00421 163 220 4.7E-16 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS18615 6d82ad2dca245c1602c42033cc56a805 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 165 218 9.0E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 SMART SM00421 204 261 2.4E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 SUPERFAMILY SSF52172 9 161 2.56E-26 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 SUPERFAMILY SSF46894 199 260 7.82E-16 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 221 237 1.2E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 221 1.2E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 237 249 1.2E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 Gene3D G3DSA:1.10.10.10 196 269 1.7E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 SMART SM00448 9 124 1.4E-17 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 Pfam PF00072 Response regulator receiver domain 11 122 4.5E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 Gene3D G3DSA:3.40.50.2300 1 146 2.1E-23 T 29-03-2018 Y880_RS19755 6b736a9839651ee6f07521e4e51b3e81 275 Pfam PF00196 Bacterial regulatory proteins, luxR family 207 259 3.4E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS26610 4a927c409d65092df4b33a5538c6fd10 257 SMART SM00563 76 190 3.8E-31 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS26610 4a927c409d65092df4b33a5538c6fd10 257 Gene3D G3DSA:3.40.1130.10 34 252 3.0E-41 T 29-03-2018 Y880_RS26610 4a927c409d65092df4b33a5538c6fd10 257 Pfam PF01553 Acyltransferase 63 187 8.8E-23 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS26610 4a927c409d65092df4b33a5538c6fd10 257 SUPERFAMILY SSF69593 15 240 2.09E-36 T 29-03-2018 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 SUPERFAMILY SSF56634 21 551 4.45E-223 T 29-03-2018 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 SUPERFAMILY SSF52317 555 682 6.54E-20 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 PRINTS PR00067 Catalase signature 360 386 7.0E-70 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 PRINTS PR00067 Catalase signature 56 79 7.0E-70 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 PRINTS PR00067 Catalase signature 159 177 7.0E-70 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 PRINTS PR00067 Catalase signature 328 355 7.0E-70 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 PRINTS PR00067 Catalase signature 140 157 7.0E-70 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 PRINTS PR00067 Catalase signature 119 137 7.0E-70 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 373 381 - T 29-03-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 ProSitePatterns PS00438 Catalase proximal active site signature. 79 95 - T 29-03-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 PIRSF PIRSF038927 1 707 0.0 T 29-03-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 Pfam PF01965 DJ-1/PfpI family 558 665 5.8E-12 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 Gene3D G3DSA:2.40.180.10 13 398 4.4E-167 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 Pfam PF00199 Catalase 44 428 1.1E-180 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 Gene3D G3DSA:3.40.50.880 555 705 1.2E-23 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 SMART SM01060 43 431 3.8E-276 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS07950 b3c4dbdc855111692ba6492dec92f0e9 709 Pfam PF06628 Catalase-related immune-responsive 461 524 5.1E-20 T 29-03-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS01605 5d62697ed20e625515ff6db545a620c1 209 SUPERFAMILY SSF54197 68 199 5.61E-35 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS01605 5d62697ed20e625515ff6db545a620c1 209 Gene3D G3DSA:3.30.428.10 67 201 3.0E-22 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS01605 5d62697ed20e625515ff6db545a620c1 209 Pfam PF01230 HIT domain 75 165 7.1E-18 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 Pfam PF03379 CcmB protein 6 219 9.6E-84 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 5.9E-70 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 134 157 5.9E-70 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 5.9E-70 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 5.9E-70 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 5.9E-70 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 5.9E-70 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 218 1.5E-86 T 29-03-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Y880_RS04350 2d1127d86759c50c8778dd454dd89053 223 PIRSF PIRSF002764 1 222 5.5E-81 T 29-03-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Y880_RS27965 3fbfed6045b7a98ca4df0bdf0ca0006a 103 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.2E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27965 3fbfed6045b7a98ca4df0bdf0ca0006a 103 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.2E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27965 3fbfed6045b7a98ca4df0bdf0ca0006a 103 SMART SM00345 17 76 2.8E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27965 3fbfed6045b7a98ca4df0bdf0ca0006a 103 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 8.6E-20 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS27965 3fbfed6045b7a98ca4df0bdf0ca0006a 103 SUPERFAMILY SSF46785 10 80 4.97E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27965 3fbfed6045b7a98ca4df0bdf0ca0006a 103 Gene3D G3DSA:1.10.10.10 7 78 1.1E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16205 84eac3b6f77dbef7a9bd614763e0a594 136 Pfam PF13652 Putative quorum-sensing-regulated virulence factor 20 131 3.4E-64 T 29-03-2018 IPR025203 Putative quorum-sensing-regulated virulence factor, QSregVF Y880_RS28985 c419108a5ec5d695ad8a174972d5e866 295 SMART SM00563 85 227 1.0E-19 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS28985 c419108a5ec5d695ad8a174972d5e866 295 SUPERFAMILY SSF69593 8 293 9.29E-58 T 29-03-2018 Y880_RS28985 c419108a5ec5d695ad8a174972d5e866 295 Pfam PF01553 Acyltransferase 73 226 6.0E-15 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS28985 c419108a5ec5d695ad8a174972d5e866 295 Gene3D G3DSA:3.40.1130.10 46 291 2.1E-21 T 29-03-2018 Y880_RS01420 3a15ffd8a91c2d05a56b933d295200bb 135 Pfam PF03724 META domain 28 129 2.9E-27 T 29-03-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 223 287 1.2E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 Gene3D G3DSA:3.30.565.10 302 449 1.6E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 SMART SM00387 336 447 4.9E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 SUPERFAMILY SSF158472 169 219 6.67E-8 T 29-03-2018 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 SUPERFAMILY SSF47384 205 287 3.53E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 444 1.2E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 399 7.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 444 7.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 7.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 424 7.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 SMART SM00304 169 221 1.4E-13 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 Pfam PF00672 HAMP domain 173 218 8.1E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 Gene3D G3DSA:1.10.287.130 212 283 1.3E-11 T 29-03-2018 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 SMART SM00388 222 287 2.2E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS02670 1c6188aaee5306b0a0c53ff9297ba7f9 452 SUPERFAMILY SSF55874 276 445 2.1E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 SMART SM00881 21 116 7.4E-36 T 29-03-2018 IPR003781 CoA-binding GO:0048037 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 SUPERFAMILY SSF51735 19 145 1.2E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 SUPERFAMILY SSF52210 315 469 6.28E-21 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 171 308 7.3E-41 T 29-03-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Pfam PF13549 ATP-grasp domain 493 706 2.4E-61 T 29-03-2018 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 SUPERFAMILY SSF52210 148 309 6.8E-37 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Pfam PF13380 CoA binding domain 25 148 1.5E-23 T 29-03-2018 IPR003781 CoA-binding GO:0048037 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Gene3D G3DSA:3.30.1490.20 511 572 1.2E-24 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Gene3D G3DSA:3.40.50.720 17 141 1.1E-39 T 29-03-2018 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 SUPERFAMILY SSF56059 494 710 4.6E-39 T 29-03-2018 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Gene3D G3DSA:3.40.50.261 314 477 4.3E-21 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Gene3D G3DSA:3.40.50.261 142 313 9.8E-36 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y880_RS01870 a6e29d4f8185333be26ffb50ba0ee345 715 Gene3D G3DSA:3.30.470.20 573 715 3.8E-26 T 29-03-2018 Y880_RS15195 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 SUPERFAMILY SSF52518 11 194 6.96E-62 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold Y880_RS15195 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 SMART SM00861 11 186 7.6E-60 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS15195 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Pfam PF02780 Transketolase, C-terminal domain 205 322 8.9E-35 T 29-03-2018 IPR033248 Transketolase, C-terminal domain Y880_RS15195 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Pfam PF02779 Transketolase, pyrimidine binding domain 12 186 4.5E-48 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y880_RS15195 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Gene3D G3DSA:3.40.50.920 203 331 3.5E-33 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS15195 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 SUPERFAMILY SSF52922 197 331 4.19E-37 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Y880_RS15195 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Gene3D G3DSA:3.40.50.970 7 202 5.5E-60 T 29-03-2018 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 54 72 - T 29-03-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 177 190 3.8E-18 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 74 86 3.8E-18 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 54 72 3.8E-18 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 261 280 3.8E-18 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 52 79 1.1E-18 T 29-03-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 96 120 1.1E-18 T 29-03-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 126 148 1.1E-18 T 29-03-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 26 50 1.1E-18 T 29-03-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 329 339 1.1E-18 T 29-03-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 271 5.0E-55 T 29-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 Gene3D G3DSA:2.40.37.10 256 387 9.1E-29 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 SUPERFAMILY SSF50621 245 386 1.51E-30 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 113 365 9.4E-15 T 29-03-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 SUPERFAMILY SSF51419 25 273 4.86E-66 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 Gene3D G3DSA:3.20.20.10 36 255 6.9E-50 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS20905 d2296bf5c2e39fae8ca731c0a1abb27a 387 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 29-03-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Y880_RS16565 bb376493ca58b8ba4615532e4746a2ec 274 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 252 1.3E-71 T 29-03-2018 Y880_RS16565 bb376493ca58b8ba4615532e4746a2ec 274 Gene3D G3DSA:3.20.20.60 1 274 3.8E-57 T 29-03-2018 Y880_RS16565 bb376493ca58b8ba4615532e4746a2ec 274 SUPERFAMILY SSF51621 5 268 2.92E-62 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS20200 b5fca3618ab571898d0c1a3e0050e94d 264 Gene3D G3DSA:1.20.144.10 8 246 1.3E-11 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS20200 b5fca3618ab571898d0c1a3e0050e94d 264 Pfam PF01569 PAP2 superfamily 100 229 1.2E-14 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS20200 b5fca3618ab571898d0c1a3e0050e94d 264 SUPERFAMILY SSF48317 19 230 3.6E-11 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS27350 8dbfd9830d0cc4a056d27cd2d812f724 365 Gene3D G3DSA:3.40.50.2300 33 150 1.8E-28 T 29-03-2018 Y880_RS27350 8dbfd9830d0cc4a056d27cd2d812f724 365 SUPERFAMILY SSF53822 174 245 5.18E-5 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS27350 8dbfd9830d0cc4a056d27cd2d812f724 365 Gene3D G3DSA:3.40.50.2300 151 365 2.6E-51 T 29-03-2018 Y880_RS27350 8dbfd9830d0cc4a056d27cd2d812f724 365 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 36 302 2.0E-52 T 29-03-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 272 442 4.4E-59 T 29-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 381 411 - T 29-03-2018 IPR030390 RNA methyltransferase TrmA, active site Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 28 450 66.456 T 29-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 SUPERFAMILY SSF53335 86 448 3.58E-77 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 Gene3D G3DSA:3.40.50.150 93 448 3.1E-56 T 29-03-2018 Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 432 442 - T 29-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 SUPERFAMILY SSF50249 17 74 9.71E-11 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 Gene3D G3DSA:2.40.50.140 17 92 4.2E-17 T 29-03-2018 Y880_RS01460 5dd7d1e087598a4b8e56626494d34d9e 450 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 276 447 4.5E-24 T 29-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 Pfam PF01297 Zinc-uptake complex component A periplasmic 48 310 1.3E-53 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 SUPERFAMILY SSF53807 41 313 9.81E-68 T 29-03-2018 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 67 85 4.7E-10 T 29-03-2018 IPR006129 Adhesin B GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 86 105 4.7E-10 T 29-03-2018 IPR006129 Adhesin B GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 144 163 4.7E-10 T 29-03-2018 IPR006129 Adhesin B GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 202 219 4.7E-10 T 29-03-2018 IPR006129 Adhesin B GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 42 63 4.7E-10 T 29-03-2018 IPR006129 Adhesin B GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 255 273 7.5E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 202 223 7.5E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 73 86 7.5E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 86 103 7.5E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 Gene3D G3DSA:3.40.50.1980 32 196 2.1E-38 T 29-03-2018 Y880_RS09385 39a82e352e0afacef9d91f703d929e9d 317 Gene3D G3DSA:3.40.50.1980 197 313 1.7E-23 T 29-03-2018 Y880_RS05840 c3adb82ad5efbefb8ca26ffc81bc4563 315 SUPERFAMILY SSF48179 188 311 8.5E-28 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS05840 c3adb82ad5efbefb8ca26ffc81bc4563 315 Gene3D G3DSA:1.10.1040.10 188 315 1.3E-32 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS05840 c3adb82ad5efbefb8ca26ffc81bc4563 315 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 7 313 1.6E-85 T 29-03-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 Y880_RS05840 c3adb82ad5efbefb8ca26ffc81bc4563 315 Pfam PF02558 Ketopantoate reductase PanE/ApbA 8 157 6.5E-38 T 29-03-2018 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 Y880_RS05840 c3adb82ad5efbefb8ca26ffc81bc4563 315 SUPERFAMILY SSF51735 7 162 3.21E-13 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS05840 c3adb82ad5efbefb8ca26ffc81bc4563 315 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 188 310 1.4E-25 T 29-03-2018 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 Y880_RS05840 c3adb82ad5efbefb8ca26ffc81bc4563 315 Gene3D G3DSA:3.40.50.720 1 187 2.3E-30 T 29-03-2018 Y880_RS25725 ed96836e4f01eb3d1c5f07793c53a154 93 Pfam PF00464 Serine hydroxymethyltransferase 2 62 5.9E-20 T 29-03-2018 Y880_RS25725 ed96836e4f01eb3d1c5f07793c53a154 93 Gene3D G3DSA:3.90.1150.10 1 93 7.5E-30 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS25725 ed96836e4f01eb3d1c5f07793c53a154 93 SUPERFAMILY SSF53383 2 92 1.14E-28 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS22070 4bdf48716dbf23b347b6be4f7d95030e 431 PIRSF PIRSF005353 1 431 1.1E-180 T 29-03-2018 IPR026033 Purine permease PbuG-like Y880_RS22070 4bdf48716dbf23b347b6be4f7d95030e 431 Pfam PF00860 Permease family 17 391 5.3E-54 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 PRINTS PR00990 Ribokinase signature 175 190 3.6E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 PRINTS PR00990 Ribokinase signature 106 119 3.6E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 PRINTS PR00990 Ribokinase signature 219 230 3.6E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 PRINTS PR00990 Ribokinase signature 34 53 3.6E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 PRINTS PR00990 Ribokinase signature 7 28 3.6E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 Pfam PF00294 pfkB family carbohydrate kinase 3 296 1.7E-74 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 Gene3D G3DSA:3.40.1190.20 1 308 1.6E-87 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 301 1.0E-118 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 SUPERFAMILY SSF53613 3 303 5.46E-89 T 29-03-2018 IPR029056 Ribokinase-like Y880_RS06905 435ad0207adf98b5b47279f2f6bc4597 308 Hamap MF_01987 Ribokinase [rbsK]. 3 303 27.623 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 Pfam PF14849 YidC periplasmic domain 208 380 4.5E-53 T 29-03-2018 IPR028053 Membrane insertase YidC, N-terminal Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 Pfam PF14849 YidC periplasmic domain 82 190 2.0E-24 T 29-03-2018 IPR028053 Membrane insertase YidC, N-terminal Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 255 273 6.3E-76 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 2 23 6.3E-76 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 452 475 6.3E-76 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 288 303 6.3E-76 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 535 558 6.3E-76 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 361 381 6.3E-76 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 499 521 6.3E-76 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 Pfam PF02096 60Kd inner membrane protein 391 569 2.2E-61 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 390 569 2.6E-72 T 29-03-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR01900 YidC translocation/secretion protein signature 505 520 7.2E-27 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR01900 YidC translocation/secretion protein signature 376 392 7.2E-27 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR01900 YidC translocation/secretion protein signature 524 548 7.2E-27 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 208 389 1.0E-62 T 29-03-2018 IPR028053 Membrane insertase YidC, N-terminal Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 190 6.9E-42 T 29-03-2018 IPR028053 Membrane insertase YidC, N-terminal Y880_RS26575 4e890f6119afe3153bd98e4910e86bd1 578 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 571 24.56 T 29-03-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 Y880_RS04385 c9ab80dabec896711f5be410668abafa 407 SUPERFAMILY SSF48452 142 284 1.3E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS04385 c9ab80dabec896711f5be410668abafa 407 Gene3D G3DSA:1.25.40.10 133 280 1.4E-20 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS04385 c9ab80dabec896711f5be410668abafa 407 SMART SM00028 221 254 17.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS04385 c9ab80dabec896711f5be410668abafa 407 SMART SM00028 150 183 0.49 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS04385 c9ab80dabec896711f5be410668abafa 407 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 4 116 1.5E-30 T 29-03-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI Y880_RS29570 4f5e2eeb7cbd35f22097d7b2134e8687 373 Pfam PF13776 Domain of unknown function (DUF4172) 6 87 1.9E-32 T 29-03-2018 IPR025230 Domain of unknown function DUF4172 Y880_RS29570 4f5e2eeb7cbd35f22097d7b2134e8687 373 Gene3D G3DSA:1.10.3290.10 24 286 1.0E-46 T 29-03-2018 IPR003812 Fido domain Y880_RS29570 4f5e2eeb7cbd35f22097d7b2134e8687 373 Gene3D G3DSA:1.10.10.10 287 373 1.0E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29570 4f5e2eeb7cbd35f22097d7b2134e8687 373 SUPERFAMILY SSF140931 101 297 1.1E-35 T 29-03-2018 IPR003812 Fido domain Y880_RS29570 4f5e2eeb7cbd35f22097d7b2134e8687 373 Pfam PF02661 Fic/DOC family 114 227 2.5E-15 T 29-03-2018 IPR003812 Fido domain Y880_RS29570 4f5e2eeb7cbd35f22097d7b2134e8687 373 SUPERFAMILY SSF46785 272 370 1.63E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04945 3e5a9a9ad8161ca6dc3e70411bd4cffd 124 Gene3D G3DSA:1.20.1300.10 1 124 1.9E-29 T 29-03-2018 Y880_RS04945 3e5a9a9ad8161ca6dc3e70411bd4cffd 124 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2 118 3.2E-32 T 29-03-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04945 3e5a9a9ad8161ca6dc3e70411bd4cffd 124 PIRSF PIRSF000178 1 124 1.9E-31 T 29-03-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04945 3e5a9a9ad8161ca6dc3e70411bd4cffd 124 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 4 122 4.0E-42 T 29-03-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04945 3e5a9a9ad8161ca6dc3e70411bd4cffd 124 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 5 29 - T 29-03-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04945 3e5a9a9ad8161ca6dc3e70411bd4cffd 124 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 80 93 - T 29-03-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04945 3e5a9a9ad8161ca6dc3e70411bd4cffd 124 SUPERFAMILY SSF81343 2 124 6.05E-35 T 29-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS21010 3df1b70c1698c64bd44979ee3e476a7b 363 Pfam PF03969 AFG1-like ATPase 18 360 1.2E-135 T 29-03-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y880_RS21010 3df1b70c1698c64bd44979ee3e476a7b 363 Gene3D G3DSA:3.40.50.300 36 331 1.2E-10 T 29-03-2018 Y880_RS21010 3df1b70c1698c64bd44979ee3e476a7b 363 SUPERFAMILY SSF52540 54 181 3.25E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 Pfam PF00072 Response regulator receiver domain 3 111 5.2E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 SMART SM00448 1 111 1.3E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 SMART SM00862 144 219 4.9E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 Gene3D G3DSA:1.10.10.10 123 225 4.7E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 218 8.8E-26 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 SUPERFAMILY SSF52172 1 178 8.9E-40 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 Gene3D G3DSA:3.40.50.2300 1 122 1.6E-32 T 29-03-2018 Y880_RS22940 0691f858313238c0b2490bb76da7a181 229 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 218 8.3E-105 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y880_RS20230 93f89e3fbdc995b460f30becd723b51e 155 Pfam PF04186 FxsA cytoplasmic membrane protein 7 113 2.7E-34 T 29-03-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 Y880_RS11910 9f1a39b0a7e0ac344bbe1cd2c26fb04a 241 Gene3D G3DSA:3.40.30.10 61 237 2.7E-26 T 29-03-2018 Y880_RS11910 9f1a39b0a7e0ac344bbe1cd2c26fb04a 241 SUPERFAMILY SSF52833 52 226 2.37E-34 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS11910 9f1a39b0a7e0ac344bbe1cd2c26fb04a 241 Pfam PF13462 Thioredoxin 61 205 3.0E-18 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS18820 a5a1a4cc3fe2f4937533e78ff5db19d7 169 Gene3D G3DSA:1.10.287.900 1 38 2.9E-14 T 29-03-2018 IPR027455 Spermine/spermidine acetyltransferase, N-terminal domain KEGG: 00330+2.3.1.57|MetaCyc: PWY-0|MetaCyc: PWY-6117 Y880_RS18820 a5a1a4cc3fe2f4937533e78ff5db19d7 169 SUPERFAMILY SSF55729 2 144 2.87E-24 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS18820 a5a1a4cc3fe2f4937533e78ff5db19d7 169 Pfam PF00583 Acetyltransferase (GNAT) family 43 128 9.4E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS18820 a5a1a4cc3fe2f4937533e78ff5db19d7 169 Gene3D G3DSA:3.40.630.30 42 139 3.6E-16 T 29-03-2018 Y880_RS23975 3789615e3c2ad09e4fac8fa815867b77 116 SUPERFAMILY SSF55298 4 115 6.75E-31 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS23975 3789615e3c2ad09e4fac8fa815867b77 116 Pfam PF01042 Endoribonuclease L-PSP 5 114 1.0E-24 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS23975 3789615e3c2ad09e4fac8fa815867b77 116 Gene3D G3DSA:3.30.1330.40 3 116 5.1E-27 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS19495 11101dbfa1b79ca4a696cbadbf89c886 116 SUPERFAMILY SSF53137 4 114 3.71E-52 T 29-03-2018 Y880_RS19495 11101dbfa1b79ca4a696cbadbf89c886 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 4 116 1.1E-42 T 29-03-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19495 11101dbfa1b79ca4a696cbadbf89c886 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 27.195 T 29-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19495 11101dbfa1b79ca4a696cbadbf89c886 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 116 2.9E-42 T 29-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19495 11101dbfa1b79ca4a696cbadbf89c886 116 Gene3D G3DSA:3.30.420.100 1 116 1.2E-38 T 29-03-2018 Y880_RS28960 7e5a14b591a175890f85bb40841c8b79 174 SUPERFAMILY SSF50630 31 163 6.05E-36 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS28960 7e5a14b591a175890f85bb40841c8b79 174 Pfam PF05618 Putative ATP-dependant zinc protease 30 166 7.6E-49 T 29-03-2018 Y880_RS28960 7e5a14b591a175890f85bb40841c8b79 174 Gene3D G3DSA:2.40.70.10 28 157 2.4E-33 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 Gene3D G3DSA:3.40.50.720 3 196 1.7E-53 T 29-03-2018 Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 Pfam PF00106 short chain dehydrogenase 15 207 1.6E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 1.5E-22 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 1.5E-22 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 1.5E-22 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.5E-22 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 1.5E-22 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 SUPERFAMILY SSF51735 12 243 3.61E-59 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13875 7ca5c0fcc6b7801b7e0d910d2513908b 246 Gene3D G3DSA:3.40.50.720 197 246 0.001 T 29-03-2018 Y880_RS26065 53a1f71169181c210ce9139daa41b5d9 429 SUPERFAMILY SSF103473 8 420 1.83E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS26065 53a1f71169181c210ce9139daa41b5d9 429 Gene3D G3DSA:1.20.1250.20 224 427 6.3E-20 T 29-03-2018 Y880_RS26065 53a1f71169181c210ce9139daa41b5d9 429 Gene3D G3DSA:1.20.1250.20 7 221 3.0E-23 T 29-03-2018 Y880_RS26065 53a1f71169181c210ce9139daa41b5d9 429 Pfam PF07690 Major Facilitator Superfamily 16 370 7.5E-27 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS26065 53a1f71169181c210ce9139daa41b5d9 429 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS26065 53a1f71169181c210ce9139daa41b5d9 429 ProSitePatterns PS00216 Sugar transport proteins signature 1. 288 305 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 Gene3D G3DSA:3.10.610.10 37 142 7.1E-32 T 29-03-2018 Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.1E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 5.8E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 SUPERFAMILY SSF54523 7 46 2.98E-5 T 29-03-2018 Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 Gene3D G3DSA:2.10.70.20 146 202 1.2E-15 T 29-03-2018 Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 Pfam PF11612 Type II secretion system (T2SS), protein J 57 197 1.6E-44 T 29-03-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 5 199 1.7E-91 T 29-03-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 Y880_RS13515 a75066e645e610733a9b2aacaa40b99a 237 SUPERFAMILY SSF54523 39 204 1.31E-45 T 29-03-2018 Y880_RS12985 9186e890bc66112c3a1b94b1c1405b35 261 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 5 255 5.5E-93 T 29-03-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 Y880_RS12985 9186e890bc66112c3a1b94b1c1405b35 261 Pfam PF04205 FMN-binding domain 146 244 4.7E-13 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y880_RS12985 9186e890bc66112c3a1b94b1c1405b35 261 SMART SM00900 146 247 4.5E-31 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y880_RS12985 9186e890bc66112c3a1b94b1c1405b35 261 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 5 259 35.403 T 29-03-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 Y880_RS12985 9186e890bc66112c3a1b94b1c1405b35 261 PIRSF PIRSF009437 1 261 7.2E-105 T 29-03-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 Y880_RS10325 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 47 69 - T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y880_RS10325 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 179 5.7E-56 T 29-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Y880_RS10325 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 PIRSF PIRSF000847 1 186 8.8E-51 T 29-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Y880_RS10325 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 69 7.0E-18 T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 Gene3D G3DSA:3.40.1500.10 2 301 3.0E-141 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 Pfam PF01218 Coproporphyrinogen III oxidase 8 301 1.8E-132 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 2 276 56.337 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PIRSF PIRSF000166 2 302 2.5E-128 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 SUPERFAMILY SSF102886 4 301 1.1E-139 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 30 46 5.1E-88 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 89 113 5.1E-88 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 261 287 5.1E-88 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 47 68 5.1E-88 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 161 190 5.1E-88 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 233 260 5.1E-88 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 124 146 5.1E-88 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS26705 d226d3587c5bbc473501a64bcbf10269 305 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 165 189 - T 29-03-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y880_RS06775 d1738bc6d91e044c2291624afd14c172 653 Pfam PF00593 TonB dependent receptor 243 649 1.0E-61 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS06775 d1738bc6d91e044c2291624afd14c172 653 SUPERFAMILY SSF56935 37 653 1.19E-126 T 29-03-2018 Y880_RS06775 d1738bc6d91e044c2291624afd14c172 653 Gene3D G3DSA:2.170.130.10 28 165 1.3E-32 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS06775 d1738bc6d91e044c2291624afd14c172 653 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 158 3.4E-26 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS06775 d1738bc6d91e044c2291624afd14c172 653 Gene3D G3DSA:2.40.170.20 167 653 1.5E-84 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS01725 e97c2e95970e4a21f4cbe571da30fef9 212 SUPERFAMILY SSF55811 67 204 4.33E-32 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS01725 e97c2e95970e4a21f4cbe571da30fef9 212 Gene3D G3DSA:3.90.79.10 69 211 9.0E-29 T 29-03-2018 Y880_RS01725 e97c2e95970e4a21f4cbe571da30fef9 212 Pfam PF00293 NUDIX domain 74 184 1.2E-19 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS01725 e97c2e95970e4a21f4cbe571da30fef9 212 PRINTS PR00502 NUDIX hydrolase family signature 98 112 8.5E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS01725 e97c2e95970e4a21f4cbe571da30fef9 212 PRINTS PR00502 NUDIX hydrolase family signature 112 127 8.5E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS01725 e97c2e95970e4a21f4cbe571da30fef9 212 ProSitePatterns PS00893 Nudix box signature. 103 124 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS01725 e97c2e95970e4a21f4cbe571da30fef9 212 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 11 62 2.1E-13 T 29-03-2018 Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 Gene3D G3DSA:3.40.50.300 4 258 4.3E-65 T 29-03-2018 Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 Pfam PF00005 ABC transporter 23 164 3.9E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 SMART SM00382 31 213 2.2E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 SUPERFAMILY SSF50331 250 345 7.82E-12 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 SUPERFAMILY SSF52540 7 242 6.69E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 Gene3D G3DSA:2.40.50.140 279 337 2.3E-4 T 29-03-2018 Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS15805 573a632998da21258f0e4c8af79fc30a 360 Pfam PF08402 TOBE domain 276 345 1.8E-10 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Y880_RS24340 58f32a4406bba97d07e570d40f0a1c38 229 Pfam PF04367 Protein of unknown function (DUF502) 72 175 3.4E-12 T 29-03-2018 IPR007462 Protein of unknown function DUF502 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 Gene3D G3DSA:3.40.30.10 73 107 3.9E-6 T 29-03-2018 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 Pfam PF00085 Thioredoxin 5 106 4.6E-35 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 PRINTS PR00421 Thioredoxin family signature 72 83 6.2E-10 T 29-03-2018 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 PRINTS PR00421 Thioredoxin family signature 32 41 6.2E-10 T 29-03-2018 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 PRINTS PR00421 Thioredoxin family signature 24 32 6.2E-10 T 29-03-2018 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 SUPERFAMILY SSF52833 3 106 4.89E-40 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 2.4E-39 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 PIRSF PIRSF000077 2 108 4.9E-46 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Y880_RS24805 2d836068f7e47d29b41c894e372dff5a 108 Gene3D G3DSA:3.40.30.10 5 72 1.6E-27 T 29-03-2018 Y880_RS22235 07cf39b60741969229bcbc36ef439cd2 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 2.8E-66 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22235 07cf39b60741969229bcbc36ef439cd2 251 Gene3D G3DSA:3.20.20.70 1 251 1.9E-94 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS22235 07cf39b60741969229bcbc36ef439cd2 251 SUPERFAMILY SSF51351 1 248 2.36E-86 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22235 07cf39b60741969229bcbc36ef439cd2 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 29-03-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22235 07cf39b60741969229bcbc36ef439cd2 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 39.187 T 29-03-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS22235 07cf39b60741969229bcbc36ef439cd2 251 Pfam PF00121 Triosephosphate isomerase 5 246 1.6E-82 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y880_RS20580 ea6704317e9c17d62d63c13d47b2e99c 265 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 15 262 8.8E-93 T 29-03-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Y880_RS20580 ea6704317e9c17d62d63c13d47b2e99c 265 Pfam PF02405 Permease MlaE 49 260 3.7E-77 T 29-03-2018 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PIRSF PIRSF019574 4 352 6.3E-98 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 Gene3D G3DSA:3.40.190.10 198 317 5.6E-17 T 29-03-2018 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 117 133 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 42 63 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 84 97 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 147 161 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 170 189 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 296 322 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 207 226 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 251 270 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 26 42 1.1E-38 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 SUPERFAMILY SSF53850 20 348 3.23E-78 T 29-03-2018 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 Gene3D G3DSA:3.40.190.10 17 197 7.4E-23 T 29-03-2018 Y880_RS28100 70f1ad2c0da8d91864761584534ed532 353 Pfam PF13416 Bacterial extracellular solute-binding protein 36 310 2.5E-27 T 29-03-2018 Y880_RS17100 a9a7ce5712639ed07c781759b785df5f 164 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 25 145 4.1E-24 T 29-03-2018 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Y880_RS24490 16709ebfe031da05ce6bedf4862d16ce 279 PIRSF PIRSF015626 8 279 4.4E-74 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y880_RS24490 16709ebfe031da05ce6bedf4862d16ce 279 Pfam PF02634 FdhD/NarQ family 41 273 3.3E-67 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y880_RS24490 16709ebfe031da05ce6bedf4862d16ce 279 SUPERFAMILY SSF53927 36 273 7.82E-69 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y880_RS24490 16709ebfe031da05ce6bedf4862d16ce 279 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 38 262 1.9E-48 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y880_RS24490 16709ebfe031da05ce6bedf4862d16ce 279 Gene3D G3DSA:3.10.20.10 42 128 3.0E-20 T 29-03-2018 Y880_RS24490 16709ebfe031da05ce6bedf4862d16ce 279 Gene3D G3DSA:3.40.140.10 143 276 1.2E-38 T 29-03-2018 Y880_RS24490 16709ebfe031da05ce6bedf4862d16ce 279 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 17 278 27.979 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y880_RS11855 89fcfcd5cd8e0a72b5cc1d4fa5241115 720 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 7 657 1.1E-262 T 29-03-2018 IPR022458 Conjugative coupling factor TraG/TraD Y880_RS11855 89fcfcd5cd8e0a72b5cc1d4fa5241115 720 SUPERFAMILY SSF52540 399 659 1.91E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11855 89fcfcd5cd8e0a72b5cc1d4fa5241115 720 SUPERFAMILY SSF52540 153 332 1.91E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11855 89fcfcd5cd8e0a72b5cc1d4fa5241115 720 Pfam PF12696 TraM recognition site of TraD and TraG 509 636 1.4E-9 T 29-03-2018 IPR032689 TraD/TraG, TraM recognition site Y880_RS11855 89fcfcd5cd8e0a72b5cc1d4fa5241115 720 Gene3D G3DSA:3.40.50.300 129 662 2.3E-26 T 29-03-2018 Y880_RS11855 89fcfcd5cd8e0a72b5cc1d4fa5241115 720 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 657 0.0 T 29-03-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 Y880_RS00475 116013059469cdde61ce6cf83c8f2fb9 233 SUPERFAMILY SSF50249 10 73 1.88E-11 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS00475 116013059469cdde61ce6cf83c8f2fb9 233 Pfam PF11967 Recombination protein O N terminal 7 73 2.5E-15 T 29-03-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal Y880_RS00475 116013059469cdde61ce6cf83c8f2fb9 233 SUPERFAMILY SSF57863 84 142 1.7E-8 T 29-03-2018 Y880_RS00475 116013059469cdde61ce6cf83c8f2fb9 233 Gene3D G3DSA:2.40.50.140 5 73 4.4E-17 T 29-03-2018 Y880_RS00475 116013059469cdde61ce6cf83c8f2fb9 233 Hamap MF_00201 DNA repair protein RecO [recO]. 3 228 19.615 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Y880_RS00475 116013059469cdde61ce6cf83c8f2fb9 233 TIGRFAM TIGR00613 reco: DNA repair protein RecO 11 145 9.7E-19 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Y880_RS00475 116013059469cdde61ce6cf83c8f2fb9 233 Pfam PF02565 Recombination protein O C terminal 80 222 7.0E-23 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Y880_RS08890 735375a4210eaf0b969a0d77a34d5093 340 Gene3D G3DSA:3.40.190.10 30 138 4.7E-13 T 29-03-2018 Y880_RS08890 735375a4210eaf0b969a0d77a34d5093 340 Pfam PF13379 NMT1-like family 33 273 7.3E-24 T 29-03-2018 Y880_RS08890 735375a4210eaf0b969a0d77a34d5093 340 SUPERFAMILY SSF53850 35 271 2.72E-30 T 29-03-2018 Y880_RS08890 735375a4210eaf0b969a0d77a34d5093 340 Gene3D G3DSA:3.40.190.10 139 333 1.5E-17 T 29-03-2018 Y880_RS09185 a6203b7de5240f3bf86ef3f590362277 141 Pfam PF04965 Gene 25-like lysozyme 26 115 3.1E-17 T 29-03-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y880_RS09185 a6203b7de5240f3bf86ef3f590362277 141 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 6 125 8.4E-26 T 29-03-2018 IPR017737 Type VI secretion system, lysozyme-related protein Y880_RS09185 a6203b7de5240f3bf86ef3f590362277 141 Gene3D G3DSA:3.10.450.40 9 128 3.3E-17 T 29-03-2018 Y880_RS09185 a6203b7de5240f3bf86ef3f590362277 141 SUPERFAMILY SSF160719 27 126 1.44E-13 T 29-03-2018 Y880_RS23495 686012b6a2c5bfbe00e1b94dd399deda 270 Pfam PF00248 Aldo/keto reductase family 22 219 4.6E-31 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS23495 686012b6a2c5bfbe00e1b94dd399deda 270 SUPERFAMILY SSF51430 10 267 3.4E-48 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS23495 686012b6a2c5bfbe00e1b94dd399deda 270 Gene3D G3DSA:3.20.20.100 5 270 8.4E-51 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS01060 bff86f9741bddefcff82d5a16e87ed99 260 Pfam PF14518 Iron-containing redox enzyme 56 232 3.1E-14 T 29-03-2018 IPR028201 PqqC-like protein Y880_RS01060 bff86f9741bddefcff82d5a16e87ed99 260 Gene3D G3DSA:1.20.910.10 1 258 2.3E-34 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS01060 bff86f9741bddefcff82d5a16e87ed99 260 SUPERFAMILY SSF48613 19 243 1.24E-44 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS29300 7addca5974c608da2ecf629a4b428f4b 85 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 6 74 3.7E-12 T 29-03-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 Y880_RS03370 220eb0e1eaf35874070a37a0f35fb6c7 97 SUPERFAMILY SSF160191 2 94 3.01E-36 T 29-03-2018 Y880_RS03370 220eb0e1eaf35874070a37a0f35fb6c7 97 Pfam PF05166 YcgL domain 5 77 6.5E-32 T 29-03-2018 IPR027354 YcgL domain Y880_RS03370 220eb0e1eaf35874070a37a0f35fb6c7 97 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 4 78 1.0E-37 T 29-03-2018 IPR027354 YcgL domain Y880_RS03370 220eb0e1eaf35874070a37a0f35fb6c7 97 Hamap MF_01866 Protein YcgL [ycgL]. 3 90 26.105 T 29-03-2018 IPR027354 YcgL domain Y880_RS15075 62a338f6ccec8253455f1c57a06cff51 304 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS15075 62a338f6ccec8253455f1c57a06cff51 304 SMART SM00382 28 214 1.7E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS15075 62a338f6ccec8253455f1c57a06cff51 304 SUPERFAMILY SSF52540 3 218 2.61E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15075 62a338f6ccec8253455f1c57a06cff51 304 Gene3D G3DSA:3.40.50.300 1 250 1.5E-57 T 29-03-2018 Y880_RS15075 62a338f6ccec8253455f1c57a06cff51 304 Pfam PF00005 ABC transporter 20 156 1.9E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 Gene3D G3DSA:1.10.10.60 253 345 8.0E-7 T 29-03-2018 Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 Gene3D G3DSA:3.40.50.300 16 192 4.1E-27 T 29-03-2018 Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 Pfam PF00158 Sigma-54 interaction domain 22 188 7.1E-68 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 107 122 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 SUPERFAMILY SSF46689 234 344 1.66E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 SMART SM00382 41 184 1.0E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 Gene3D G3DSA:1.10.8.60 194 252 1.5E-21 T 29-03-2018 Y880_RS09140 c2fd18e6778910d84b3be0178f47c268 361 SUPERFAMILY SSF52540 22 262 4.05E-71 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20560 c0b82c26858270dedeab9e498ba386cd 79 PIRSF PIRSF003113 1 79 4.1E-16 T 29-03-2018 IPR002634 BolA protein Y880_RS20560 c0b82c26858270dedeab9e498ba386cd 79 SUPERFAMILY SSF82657 1 78 1.22E-21 T 29-03-2018 IPR002634 BolA protein Y880_RS20560 c0b82c26858270dedeab9e498ba386cd 79 Pfam PF01722 BolA-like protein 22 70 9.5E-8 T 29-03-2018 IPR002634 BolA protein Y880_RS20560 c0b82c26858270dedeab9e498ba386cd 79 Gene3D G3DSA:3.30.300.90 1 79 7.4E-18 T 29-03-2018 Y880_RS24945 47173f8fbd970ce3508496d969e6035e 326 Gene3D G3DSA:1.20.58.340 259 326 1.3E-19 T 29-03-2018 Y880_RS24945 47173f8fbd970ce3508496d969e6035e 326 SUPERFAMILY SSF143865 1 265 2.35E-40 T 29-03-2018 Y880_RS24945 47173f8fbd970ce3508496d969e6035e 326 Gene3D G3DSA:3.30.460.20 1 124 4.6E-16 T 29-03-2018 Y880_RS24945 47173f8fbd970ce3508496d969e6035e 326 SUPERFAMILY SSF144083 261 323 8.5E-20 T 29-03-2018 Y880_RS24945 47173f8fbd970ce3508496d969e6035e 326 Pfam PF01544 CorA-like Mg2+ transporter protein 28 321 5.9E-54 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y880_RS24945 47173f8fbd970ce3508496d969e6035e 326 Gene3D G3DSA:1.20.58.340 133 258 1.7E-20 T 29-03-2018 Y880_RS00380 3b27edbaaed380e5c4f11a891bb6ee98 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 324 2.2E-24 T 29-03-2018 IPR005064 Bordetella uptake gene GO:0030288 Y880_RS00380 3b27edbaaed380e5c4f11a891bb6ee98 327 PIRSF PIRSF017082 1 327 3.4E-81 T 29-03-2018 IPR005064 Bordetella uptake gene GO:0030288 Y880_RS00380 3b27edbaaed380e5c4f11a891bb6ee98 327 SUPERFAMILY SSF53850 61 277 2.76E-11 T 29-03-2018 Y880_RS00380 3b27edbaaed380e5c4f11a891bb6ee98 327 Gene3D G3DSA:3.40.190.10 122 241 1.4E-14 T 29-03-2018 Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 SUPERFAMILY SSF52540 8 194 1.77E-40 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 10 430 5.6E-82 T 29-03-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 9 187 5.9E-13 T 29-03-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 SUPERFAMILY SSF52317 235 428 9.01E-31 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 Gene3D G3DSA:3.40.50.880 230 379 3.7E-21 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 239 418 1.2E-30 T 29-03-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 6 421 39.099 T 29-03-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Y880_RS03270 c7583dad166aa9b0a8f5942a59c7bcca 435 Gene3D G3DSA:3.40.50.300 1 181 6.9E-29 T 29-03-2018 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 Pfam PF00120 Glutamine synthetase, catalytic domain 102 466 9.5E-139 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 29-03-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 29-03-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 29-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 Gene3D G3DSA:3.30.590.10 105 458 6.3E-124 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 SUPERFAMILY SSF55931 102 468 1.96E-136 T 29-03-2018 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 Gene3D G3DSA:3.10.20.70 3 104 1.2E-27 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 468 3.9E-204 T 29-03-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 SMART SM01230 102 379 7.5E-147 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 SUPERFAMILY SSF54368 7 100 1.96E-33 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS24160 ae42b588c2bd3f01596a2cc992f2531e 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 13 95 5.9E-30 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS05520 658361b4b52bca5af5f4aaf9fa0fdd15 262 Pfam PF01311 Bacterial export proteins, family 1 11 243 7.8E-52 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS05520 658361b4b52bca5af5f4aaf9fa0fdd15 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.8E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS05520 658361b4b52bca5af5f4aaf9fa0fdd15 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.8E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS05520 658361b4b52bca5af5f4aaf9fa0fdd15 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 79 98 1.8E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS05520 658361b4b52bca5af5f4aaf9fa0fdd15 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 19 40 1.8E-27 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y880_RS05520 658361b4b52bca5af5f4aaf9fa0fdd15 262 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 4 256 1.4E-88 T 29-03-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0006810|GO:0016021 Y880_RS14195 786c328242cb4e67af5967e4116c488f 551 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 452 472 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS14195 786c328242cb4e67af5967e4116c488f 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS14195 786c328242cb4e67af5967e4116c488f 551 Pfam PF00474 Sodium:solute symporter family 64 470 8.0E-129 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS14195 786c328242cb4e67af5967e4116c488f 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 469 1.3E-61 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS11985 45b2f7d626d895fb211e5355b78da413 187 SUPERFAMILY SSF48498 70 176 2.16E-5 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS11985 45b2f7d626d895fb211e5355b78da413 187 Gene3D G3DSA:1.10.357.10 28 187 9.6E-15 T 29-03-2018 Y880_RS03785 020a8defec9653760448c7a50e3d0f21 205 SUPERFAMILY SSF46689 12 95 1.5E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03785 020a8defec9653760448c7a50e3d0f21 205 Gene3D G3DSA:1.10.357.10 69 205 7.4E-13 T 29-03-2018 Y880_RS03785 020a8defec9653760448c7a50e3d0f21 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 65 1.1E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03785 020a8defec9653760448c7a50e3d0f21 205 SUPERFAMILY SSF48498 90 204 1.7E-9 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS03785 020a8defec9653760448c7a50e3d0f21 205 Gene3D G3DSA:1.10.10.60 1 68 1.6E-13 T 29-03-2018 Y880_RS23145 851b83b8a963a3e45a0f7e81d702badb 311 SMART SM00460 192 262 2.9E-23 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS23145 851b83b8a963a3e45a0f7e81d702badb 311 SUPERFAMILY SSF54001 130 287 1.67E-45 T 29-03-2018 Y880_RS23145 851b83b8a963a3e45a0f7e81d702badb 311 Gene3D G3DSA:3.90.260.10 179 267 6.3E-7 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS23145 851b83b8a963a3e45a0f7e81d702badb 311 Pfam PF01841 Transglutaminase-like superfamily 160 260 2.0E-22 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS23145 851b83b8a963a3e45a0f7e81d702badb 311 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 16 95 1.8E-24 T 29-03-2018 IPR013589 Bacterial transglutaminase-like, N-terminal Y880_RS03350 35593789bf3b60ae0c4ebf85d57364ca 279 Gene3D G3DSA:3.40.50.1820 5 276 1.4E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03350 35593789bf3b60ae0c4ebf85d57364ca 279 Pfam PF12697 Alpha/beta hydrolase family 37 263 9.3E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS03350 35593789bf3b60ae0c4ebf85d57364ca 279 PIRSF PIRSF037442 1 279 9.5E-77 T 29-03-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y880_RS03350 35593789bf3b60ae0c4ebf85d57364ca 279 SUPERFAMILY SSF53474 5 275 7.03E-26 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS02880 f025f610712fe4a4e9baf75dba3b8a99 177 Gene3D G3DSA:3.90.1720.10 20 89 1.8E-15 T 29-03-2018 Y880_RS02880 f025f610712fe4a4e9baf75dba3b8a99 177 Pfam PF00877 NlpC/P60 family 56 164 7.1E-30 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y880_RS02880 f025f610712fe4a4e9baf75dba3b8a99 177 SUPERFAMILY SSF54001 36 167 3.09E-40 T 29-03-2018 Y880_RS02880 f025f610712fe4a4e9baf75dba3b8a99 177 Gene3D G3DSA:2.30.260.10 90 170 8.8E-21 T 29-03-2018 Y880_RS19565 b8e51c0942d9744f3541a24c81218d3c 99 SUPERFAMILY SSF54189 1 91 1.62E-29 T 29-03-2018 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19565 b8e51c0942d9744f3541a24c81218d3c 99 Gene3D G3DSA:3.30.70.330 5 99 4.3E-30 T 29-03-2018 Y880_RS19565 b8e51c0942d9744f3541a24c81218d3c 99 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 22.008 T 29-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Y880_RS19565 b8e51c0942d9744f3541a24c81218d3c 99 Pfam PF00276 Ribosomal protein L23 8 94 9.3E-31 T 29-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Y880_RS01855 c1ec534d884c817efae3ab1753720f3d 266 SUPERFAMILY SSF46785 15 86 4.17E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01855 c1ec534d884c817efae3ab1753720f3d 266 SMART SM00346 15 104 1.7E-12 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS01855 c1ec534d884c817efae3ab1753720f3d 266 Gene3D G3DSA:1.10.10.10 1 76 2.6E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS01855 c1ec534d884c817efae3ab1753720f3d 266 Pfam PF01614 Bacterial transcriptional regulator 134 253 3.2E-10 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS01855 c1ec534d884c817efae3ab1753720f3d 266 Gene3D G3DSA:3.30.450.40 87 264 6.1E-28 T 29-03-2018 IPR029016 GAF domain-like Y880_RS01855 c1ec534d884c817efae3ab1753720f3d 266 Pfam PF09339 IclR helix-turn-helix domain 17 65 1.4E-12 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS01855 c1ec534d884c817efae3ab1753720f3d 266 SUPERFAMILY SSF55781 73 255 6.54E-26 T 29-03-2018 IPR029016 GAF domain-like Y880_RS06400 1af61299736590195a2c21de29ca8c8c 401 SUPERFAMILY SSF55073 235 392 5.1E-43 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS06400 1af61299736590195a2c21de29ca8c8c 401 Pfam PF00990 Diguanylate cyclase, GGDEF domain 230 388 2.9E-41 T 29-03-2018 IPR000160 GGDEF domain Y880_RS06400 1af61299736590195a2c21de29ca8c8c 401 Gene3D G3DSA:3.30.70.270 224 400 6.7E-49 T 29-03-2018 Y880_RS06400 1af61299736590195a2c21de29ca8c8c 401 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 228 392 4.6E-44 T 29-03-2018 IPR000160 GGDEF domain Y880_RS06400 1af61299736590195a2c21de29ca8c8c 401 SMART SM00267 219 393 1.3E-50 T 29-03-2018 IPR000160 GGDEF domain Y880_RS26400 833d6029bc5afac0638e177dba3e0a88 414 Gene3D G3DSA:3.40.710.10 91 410 3.5E-56 T 29-03-2018 Y880_RS26400 833d6029bc5afac0638e177dba3e0a88 414 SUPERFAMILY SSF56601 43 413 8.96E-88 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS26400 833d6029bc5afac0638e177dba3e0a88 414 Pfam PF00144 Beta-lactamase 95 408 7.2E-56 T 29-03-2018 IPR001466 Beta-lactamase-related Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 Gene3D G3DSA:3.40.50.300 1 240 3.0E-75 T 29-03-2018 Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 Gene3D G3DSA:2.40.50.140 297 348 1.5E-12 T 29-03-2018 Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 SUPERFAMILY SSF52540 4 245 5.9E-86 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 Pfam PF00005 ABC transporter 21 163 3.1E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 SMART SM00382 30 213 1.5E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 SUPERFAMILY SSF50331 238 363 7.05E-26 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 Pfam PF03459 TOBE domain 297 353 6.7E-9 T 29-03-2018 IPR005116 Transport-associated OB, type 1 Y880_RS13950 1d3628c44adb0fab671ef2674dd6ff56 386 Gene3D G3DSA:2.40.50.100 241 296 4.2E-11 T 29-03-2018 Y880_RS25130 ecde048ef575456761d4e00ccc47b439 117 SUPERFAMILY SSF55298 9 117 5.97E-33 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS25130 ecde048ef575456761d4e00ccc47b439 117 Gene3D G3DSA:3.30.1330.40 2 117 7.0E-32 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS25130 ecde048ef575456761d4e00ccc47b439 117 Pfam PF01042 Endoribonuclease L-PSP 9 115 8.2E-25 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 Pfam PF00672 HAMP domain 325 371 4.8E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 436 618 7.4E-45 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 SMART SM01358 37 301 2.7E-38 T 29-03-2018 IPR032255 Helical bimodular sensor domain Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 SMART SM00283 390 651 2.3E-84 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 SUPERFAMILY SSF58104 343 652 5.23E-79 T 29-03-2018 Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 SMART SM00304 376 428 22.0 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 SMART SM00304 323 375 1.4E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 Gene3D G3DSA:1.10.287.950 52 424 6.3E-6 T 29-03-2018 Y880_RS05280 6af1732f4c141b57a7f73f21af439676 652 Gene3D G3DSA:1.10.287.950 425 652 2.7E-55 T 29-03-2018 Y880_RS05480 4946816ba9149f85a011cc6e84ad9e68 181 Pfam PF03079 ARD/ARD' family 6 165 8.5E-36 T 29-03-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 Y880_RS05480 4946816ba9149f85a011cc6e84ad9e68 181 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 39.744 T 29-03-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.53+1.13.11.54|MetaCyc: PWY-4361|MetaCyc: PWY-5389 Y880_RS05480 4946816ba9149f85a011cc6e84ad9e68 181 SUPERFAMILY SSF51182 1 179 4.86E-42 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS05480 4946816ba9149f85a011cc6e84ad9e68 181 Gene3D G3DSA:2.60.120.10 2 157 7.9E-41 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS14230 15d817d4291d1907545c4fca942a6c6d 389 Gene3D G3DSA:3.40.1090.10 2 304 5.4E-41 T 29-03-2018 Y880_RS14230 15d817d4291d1907545c4fca942a6c6d 389 SUPERFAMILY SSF52151 9 251 3.14E-49 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Y880_RS14230 15d817d4291d1907545c4fca942a6c6d 389 Pfam PF01734 Patatin-like phospholipase 14 226 3.2E-23 T 29-03-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 Pfam PF00561 alpha/beta hydrolase fold 22 246 4.2E-17 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 Gene3D G3DSA:3.40.50.1820 3 262 1.0E-46 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 207 221 2.2E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.2E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.2E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.2E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 SUPERFAMILY SSF53474 2 260 9.87E-61 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS27755 60f7a26e0bcc0e87d76c97e2df7ebe6a 263 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 11 260 7.4E-98 T 29-03-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 Y880_RS23075 7e8e5737842ac8c27fbc7562a683bb8b 304 Gene3D G3DSA:1.10.3470.10 1 293 1.9E-51 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS23075 7e8e5737842ac8c27fbc7562a683bb8b 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 288 2.5E-50 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS16865 f11d2c57f8c784bdf010c26e164d0942 141 SUPERFAMILY SSF54637 16 133 6.95E-36 T 29-03-2018 IPR029069 HotDog domain Y880_RS16865 f11d2c57f8c784bdf010c26e164d0942 141 Pfam PF03061 Thioesterase superfamily 31 103 2.5E-17 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS16865 f11d2c57f8c784bdf010c26e164d0942 141 Gene3D G3DSA:3.10.129.10 18 141 2.4E-34 T 29-03-2018 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 Pfam PF03466 LysR substrate binding domain 92 279 2.4E-15 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 Gene3D G3DSA:3.40.190.10 186 263 7.1E-7 T 29-03-2018 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 297 57.062 T 29-03-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 SUPERFAMILY SSF46785 3 112 3.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 Gene3D G3DSA:3.40.190.10 95 185 1.3E-34 T 29-03-2018 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.9E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 4 292 4.0E-113 T 29-03-2018 IPR017685 HTH-type transcriptional regulator ArgP Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 SUPERFAMILY SSF53850 86 291 2.71E-22 T 29-03-2018 Y880_RS20105 85da9c1928a4fc23d2f8c40baf17aa1c 300 Gene3D G3DSA:1.10.10.10 3 88 1.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00390 33d9d0d58a907a3a3221d72d74fddd75 223 SMART SM00862 145 218 9.4E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS00390 33d9d0d58a907a3a3221d72d74fddd75 223 SMART SM00448 1 112 2.1E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS00390 33d9d0d58a907a3a3221d72d74fddd75 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 2.2E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS00390 33d9d0d58a907a3a3221d72d74fddd75 223 Gene3D G3DSA:3.40.50.2300 1 120 3.7E-34 T 29-03-2018 Y880_RS00390 33d9d0d58a907a3a3221d72d74fddd75 223 Gene3D G3DSA:1.10.10.10 121 222 3.7E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00390 33d9d0d58a907a3a3221d72d74fddd75 223 Pfam PF00072 Response regulator receiver domain 3 112 5.7E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS00390 33d9d0d58a907a3a3221d72d74fddd75 223 SUPERFAMILY SSF52172 1 173 9.68E-39 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS04565 dac168a9e2ac461bf88502a99edcfadf 449 Pfam PF00860 Permease family 38 411 2.4E-50 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS04565 dac168a9e2ac461bf88502a99edcfadf 449 PIRSF PIRSF005353 14 449 1.2E-173 T 29-03-2018 IPR026033 Purine permease PbuG-like Y880_RS16760 dcfc40db2507b41364d610725fdb5bc9 213 SUPERFAMILY SSF46689 7 82 4.14E-19 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS16760 dcfc40db2507b41364d610725fdb5bc9 213 Gene3D G3DSA:1.10.10.60 13 68 1.0E-20 T 29-03-2018 Y880_RS16760 dcfc40db2507b41364d610725fdb5bc9 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 4.4E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16760 dcfc40db2507b41364d610725fdb5bc9 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.4E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16760 dcfc40db2507b41364d610725fdb5bc9 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.4E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16760 dcfc40db2507b41364d610725fdb5bc9 213 Gene3D G3DSA:1.10.357.10 69 204 4.9E-15 T 29-03-2018 Y880_RS18175 d6541582194c0a2ceade3731a3fbed45 253 Pfam PF02698 DUF218 domain 81 243 1.4E-26 T 29-03-2018 IPR003848 Domain of unknown function DUF218 Y880_RS18175 d6541582194c0a2ceade3731a3fbed45 253 Gene3D G3DSA:3.40.50.620 75 215 1.4E-31 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS08380 004e4f2dff088fb5609d438a06f360bb 443 PIRSF PIRSF006060 1 434 2.9E-62 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS08380 004e4f2dff088fb5609d438a06f360bb 443 Pfam PF00324 Amino acid permease 31 373 2.1E-41 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS07605 722e7ae44800d9b1c254e2bdc553f01a 169 SUPERFAMILY SSF54427 7 160 2.77E-37 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS07605 722e7ae44800d9b1c254e2bdc553f01a 169 Pfam PF00866 Ring hydroxylating beta subunit 23 160 3.9E-39 T 29-03-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 Y880_RS07605 722e7ae44800d9b1c254e2bdc553f01a 169 Gene3D G3DSA:3.10.450.50 9 168 2.1E-24 T 29-03-2018 Y880_RS20715 51f0b155cae4137b9c7a89be536d4f91 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 2.4E-29 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Y880_RS20715 51f0b155cae4137b9c7a89be536d4f91 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 24.079 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Y880_RS20715 51f0b155cae4137b9c7a89be536d4f91 95 SUPERFAMILY SSF141000 3 93 1.7E-28 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Y880_RS20715 51f0b155cae4137b9c7a89be536d4f91 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 1.6E-17 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 Gene3D G3DSA:3.40.190.10 180 261 4.0E-12 T 29-03-2018 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 4.2E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 Gene3D G3DSA:3.40.190.10 92 179 1.4E-12 T 29-03-2018 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.8E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.8E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.8E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 Gene3D G3DSA:1.10.10.10 6 91 1.8E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 Pfam PF03466 LysR substrate binding domain 92 293 1.8E-33 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 SUPERFAMILY SSF53850 93 296 3.08E-29 T 29-03-2018 Y880_RS25080 1814f24fdbfec662a4493ed3b5643537 305 SUPERFAMILY SSF46785 2 86 1.19E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23100 546dd4f90a38c7af07f42e6d4c3fd5aa 200 Gene3D G3DSA:3.40.50.620 163 198 0.035 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23100 546dd4f90a38c7af07f42e6d4c3fd5aa 200 SUPERFAMILY SSF52374 27 177 1.56E-21 T 29-03-2018 Y880_RS23100 546dd4f90a38c7af07f42e6d4c3fd5aa 200 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 27 61 4.9E-7 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS23100 546dd4f90a38c7af07f42e6d4c3fd5aa 200 Gene3D G3DSA:3.40.50.620 23 162 3.2E-17 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS23100 546dd4f90a38c7af07f42e6d4c3fd5aa 200 Pfam PF01467 Cytidylyltransferase-like 28 156 5.4E-6 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 Gene3D G3DSA:3.40.190.10 175 264 2.8E-9 T 29-03-2018 Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.4E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 SUPERFAMILY SSF53850 86 283 2.71E-16 T 29-03-2018 Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 Gene3D G3DSA:3.40.190.10 86 174 0.0044 T 29-03-2018 Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 Gene3D G3DSA:1.10.10.10 2 84 1.6E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 SUPERFAMILY SSF46785 3 86 1.09E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 Pfam PF03466 LysR substrate binding domain 86 297 5.0E-23 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.4E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.4E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07555 fecd90098d47803919148ab2e3645ca3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.4E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 607 736 3.6E-49 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 22 143 5.6E-24 T 29-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 388 402 - T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 Gene3D G3DSA:3.90.1150.10 455 631 1.4E-57 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 SUPERFAMILY SSF53383 149 599 5.39E-113 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 SUPERFAMILY SSF55904 602 751 1.24E-43 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 Gene3D G3DSA:3.90.100.10 632 751 2.0E-35 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 PIRSF PIRSF009393 3 751 7.7E-290 T 29-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 Gene3D G3DSA:3.40.640.10 149 454 6.4E-41 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS06220 2cabf40104537edbc1bc86dd9cd6c8bc 751 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 149 582 1.9E-160 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 SUPERFAMILY SSF111369 59 152 3.79E-10 T 29-03-2018 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 SUPERFAMILY SSF111369 144 202 1.57E-5 T 29-03-2018 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 Pfam PF13533 Biotin-lipoyl like 64 112 1.3E-10 T 29-03-2018 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 SUPERFAMILY SSF111369 231 305 5.23E-10 T 29-03-2018 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 Gene3D G3DSA:2.40.50.100 241 355 7.0E-9 T 29-03-2018 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 Gene3D G3DSA:1.10.287.470 148 200 5.3E-11 T 29-03-2018 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 Pfam PF13437 HlyD family secretion protein 249 362 6.4E-15 T 29-03-2018 Y880_RS12005 1aa2bdb0797223dcd4653dcfe7e5e7d4 391 Gene3D G3DSA:2.40.50.100 65 147 2.7E-9 T 29-03-2018 Y880_RS02970 1b20e1d9fdeb8115229050ed0afcb073 455 SUPERFAMILY SSF51182 400 442 6.77E-5 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS02970 1b20e1d9fdeb8115229050ed0afcb073 455 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 189 202 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y880_RS02970 1b20e1d9fdeb8115229050ed0afcb073 455 Gene3D G3DSA:3.20.20.70 1 326 1.4E-74 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS02970 1b20e1d9fdeb8115229050ed0afcb073 455 Pfam PF00682 HMGL-like 2 259 2.7E-59 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y880_RS02970 1b20e1d9fdeb8115229050ed0afcb073 455 Gene3D G3DSA:2.60.120.10 327 455 1.9E-4 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS02970 1b20e1d9fdeb8115229050ed0afcb073 455 SUPERFAMILY SSF51569 2 277 1.03E-67 T 29-03-2018 Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 SUPERFAMILY SSF51735 112 267 2.8E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 8.8E-9 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 29-03-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 SMART SM00829 11 323 5.7E-35 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 Pfam PF00107 Zinc-binding dehydrogenase 152 278 7.2E-27 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 Gene3D G3DSA:3.90.180.10 249 324 1.3E-4 T 29-03-2018 Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 Gene3D G3DSA:3.40.50.720 150 248 4.5E-19 T 29-03-2018 Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 SUPERFAMILY SSF50129 8 142 1.31E-38 T 29-03-2018 IPR011032 GroES-like Y880_RS26700 f4f12027a521f438c3bd76cffa8b2bfc 325 Gene3D G3DSA:3.90.180.10 1 149 7.3E-47 T 29-03-2018 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PIRSF PIRSF002560 1 157 1.1E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 Gene3D G3DSA:1.20.1260.10 2 78 1.7E-15 T 29-03-2018 IPR012347 Ferritin-related Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 Gene3D G3DSA:1.20.5.420 85 139 3.7E-24 T 29-03-2018 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 Pfam PF00210 Ferritin-like domain 8 143 5.4E-40 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 157 1.2E-78 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 SUPERFAMILY SSF47240 1 154 7.93E-54 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PRINTS PR00601 Bacterioferritin signature 128 149 2.0E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PRINTS PR00601 Bacterioferritin signature 107 127 2.0E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PRINTS PR00601 Bacterioferritin signature 65 85 2.0E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PRINTS PR00601 Bacterioferritin signature 3 22 2.0E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PRINTS PR00601 Bacterioferritin signature 86 106 2.0E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PRINTS PR00601 Bacterioferritin signature 23 43 2.0E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS15770 e9858ce5bdf1b8029c2df44b2926fcd5 158 PRINTS PR00601 Bacterioferritin signature 44 64 2.0E-73 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 51 72 4.0E-5 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 19.899 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 Pfam PF00550 Phosphopantetheine attachment site 7 73 2.6E-14 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 SUPERFAMILY SSF47336 1 77 3.14E-20 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 SMART SM00823 Phosphopantetheine attachment site 5 77 0.0084 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 Gene3D G3DSA:1.10.1200.10 1 78 1.0E-23 T 29-03-2018 Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site Y880_RS06495 dc11005e3c7ba8602d282502b4e9bf62 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 75 1.2E-25 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y880_RS24035 0229a2302441b6c2cb73e60df59b997f 283 SUPERFAMILY SSF161098 87 271 9.42E-43 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24035 0229a2302441b6c2cb73e60df59b997f 283 Gene3D G3DSA:1.10.3720.10 4 283 6.0E-36 T 29-03-2018 Y880_RS24035 0229a2302441b6c2cb73e60df59b997f 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 268 2.0E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS26460 d601a2db832c4624c0711a71ffaaf0ee 296 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 159 249 4.3E-9 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS26460 d601a2db832c4624c0711a71ffaaf0ee 296 Gene3D G3DSA:2.60.120.330 30 294 3.8E-24 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS26460 d601a2db832c4624c0711a71ffaaf0ee 296 SUPERFAMILY SSF51197 34 255 3.64E-23 T 29-03-2018 Y880_RS14700 a106aec242f5c0072ee10b4f8f8f5651 295 Gene3D G3DSA:1.20.1260.10 27 203 2.3E-10 T 29-03-2018 IPR012347 Ferritin-related Y880_RS14700 a106aec242f5c0072ee10b4f8f8f5651 295 PIRSF PIRSF007580 1 293 2.7E-120 T 29-03-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y880_RS14700 a106aec242f5c0072ee10b4f8f8f5651 295 Pfam PF10118 Predicted metal-dependent hydrolase 10 273 9.3E-73 T 29-03-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y880_RS17395 59a7228d915e6b20ecc57cfb6f4832ec 296 Gene3D G3DSA:1.10.3470.10 1 290 1.2E-38 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS17395 59a7228d915e6b20ecc57cfb6f4832ec 296 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 277 2.5E-31 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 Pfam PF13534 4Fe-4S dicluster domain 145 218 4.3E-9 T 29-03-2018 Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 146 157 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 Gene3D G3DSA:3.10.20.30 1 104 1.9E-30 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 6 227 3.9E-84 T 29-03-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 Gene3D G3DSA:1.10.1060.10 105 235 2.5E-30 T 29-03-2018 Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 SUPERFAMILY SSF46548 105 232 2.27E-38 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 SUPERFAMILY SSF54292 2 104 3.3E-26 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS04960 6ae7f5bc8a7f913dc65b62672520ab51 235 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 108 1.9E-30 T 29-03-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS13750 19f9cf7de4463687332ab06b11769cad 109 SUPERFAMILY SSF47781 34 107 8.12E-24 T 29-03-2018 IPR010994 RuvA domain 2-like Y880_RS13750 19f9cf7de4463687332ab06b11769cad 109 Pfam PF12836 Helix-hairpin-helix motif 44 106 5.6E-20 T 29-03-2018 Y880_RS13750 19f9cf7de4463687332ab06b11769cad 109 SMART SM00278 56 75 2.7 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y880_RS13750 19f9cf7de4463687332ab06b11769cad 109 SMART SM00278 86 105 20.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y880_RS13750 19f9cf7de4463687332ab06b11769cad 109 Gene3D G3DSA:1.10.150.20 19 64 3.1E-6 T 29-03-2018 Y880_RS13750 19f9cf7de4463687332ab06b11769cad 109 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 44 108 7.3E-21 T 29-03-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain Y880_RS13750 19f9cf7de4463687332ab06b11769cad 109 Gene3D G3DSA:1.10.150.310 65 109 6.7E-13 T 29-03-2018 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 395 695 2.2E-125 T 29-03-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 SUPERFAMILY SSF53659 381 698 1.27E-88 T 29-03-2018 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 Gene3D G3DSA:3.40.1390.20 220 356 2.4E-29 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 Pfam PF13500 AAA domain 2 219 3.5E-33 T 29-03-2018 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 Gene3D G3DSA:3.40.50.10750 518 671 6.6E-61 T 29-03-2018 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 PIRSF PIRSF006107 1 703 0.0 T 29-03-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 SUPERFAMILY SSF52540 1 229 1.13E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 Pfam PF01515 Phosphate acetyl/butaryl transferase 380 695 6.3E-118 T 29-03-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 SUPERFAMILY SSF75138 220 343 3.92E-25 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 Pfam PF07085 DRTGG domain 223 335 2.4E-31 T 29-03-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y880_RS00920 70ac5c68293dd26f41dd2d453e084ecf 704 Gene3D G3DSA:3.40.50.300 1 219 8.4E-39 T 29-03-2018 Y880_RS07350 458eaf108a17d2dfb9094f4230612ce2 104 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 2 98 8.3E-23 T 29-03-2018 IPR008407 Branched-chain amino acid transport, AzlD Y880_RS06390 868965d9045e6bf51c6260bf5c2534ff 334 Gene3D G3DSA:3.40.50.880 4 134 3.1E-22 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS06390 868965d9045e6bf51c6260bf5c2534ff 334 Pfam PF01965 DJ-1/PfpI family 7 119 3.4E-9 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS06390 868965d9045e6bf51c6260bf5c2534ff 334 SUPERFAMILY SSF52317 6 120 2.94E-19 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS11025 6819ac26c117e44347677bdb0f398c47 276 SUPERFAMILY SSF53474 1 275 5.09E-62 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS11025 6819ac26c117e44347677bdb0f398c47 276 Gene3D G3DSA:3.40.50.1820 1 276 2.2E-70 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS11025 6819ac26c117e44347677bdb0f398c47 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 6.2E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS11025 6819ac26c117e44347677bdb0f398c47 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 6.2E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS11025 6819ac26c117e44347677bdb0f398c47 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 6.2E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS11025 6819ac26c117e44347677bdb0f398c47 276 Pfam PF00561 alpha/beta hydrolase fold 24 256 1.6E-24 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS15720 5d69c7019bc29929e26a255c4078bc19 491 Gene3D G3DSA:1.20.1600.10 18 467 4.5E-81 T 29-03-2018 Y880_RS15720 5d69c7019bc29929e26a255c4078bc19 491 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 462 1.7E-91 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS15720 5d69c7019bc29929e26a255c4078bc19 491 SUPERFAMILY SSF56954 4 464 1.44E-89 T 29-03-2018 Y880_RS15720 5d69c7019bc29929e26a255c4078bc19 491 Pfam PF02321 Outer membrane efflux protein 282 460 5.2E-20 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS15720 5d69c7019bc29929e26a255c4078bc19 491 Pfam PF02321 Outer membrane efflux protein 61 249 3.3E-20 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS19760 7387af2a13b637dc0898a166285a1ec0 556 Pfam PF09977 Putative Tad-like Flp pilus-assembly 55 156 1.8E-8 T 29-03-2018 IPR018705 Domain of unknown function DUF2134, membrane Y880_RS01665 92e4152e19941d64ee100eccd1f537aa 347 Pfam PF13103 TonB C terminal 258 322 1.1E-11 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS01665 92e4152e19941d64ee100eccd1f537aa 347 Gene3D G3DSA:3.30.1150.10 238 343 1.6E-19 T 29-03-2018 Y880_RS01665 92e4152e19941d64ee100eccd1f537aa 347 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 266 342 2.4E-14 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS01665 92e4152e19941d64ee100eccd1f537aa 347 TIGRFAM TIGR02794 tolA_full: protein TolA 15 342 2.2E-61 T 29-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 Y880_RS01665 92e4152e19941d64ee100eccd1f537aa 347 SUPERFAMILY SSF74653 229 344 2.26E-25 T 29-03-2018 Y880_RS07515 10dadc0009d3f364a781dead5e8079c1 574 Gene3D G3DSA:3.30.420.40 1 151 3.2E-25 T 29-03-2018 Y880_RS07515 10dadc0009d3f364a781dead5e8079c1 574 Pfam PF02543 Carbamoyltransferase N-terminus 4 337 3.8E-51 T 29-03-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 Y880_RS07515 10dadc0009d3f364a781dead5e8079c1 574 Gene3D G3DSA:3.90.870.10 379 563 0.0013 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain Y880_RS07515 10dadc0009d3f364a781dead5e8079c1 574 Gene3D G3DSA:3.30.420.40 180 317 2.0E-5 T 29-03-2018 Y880_RS07515 10dadc0009d3f364a781dead5e8079c1 574 SUPERFAMILY SSF53067 12 78 4.32E-15 T 29-03-2018 Y880_RS07515 10dadc0009d3f364a781dead5e8079c1 574 SUPERFAMILY SSF53067 131 340 4.32E-15 T 29-03-2018 Y880_RS07515 10dadc0009d3f364a781dead5e8079c1 574 Pfam PF16861 Carbamoyltransferase C-terminus 390 559 3.2E-53 T 29-03-2018 IPR031730 Carbamoyltransferase, C-terminal Y880_RS03495 f7a0f7666fc6327d47dec39f4c091c38 209 Pfam PF00510 Cytochrome c oxidase subunit III 20 207 8.8E-17 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03495 f7a0f7666fc6327d47dec39f4c091c38 209 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 30 209 5.4E-86 T 29-03-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 Y880_RS03495 f7a0f7666fc6327d47dec39f4c091c38 209 SUPERFAMILY SSF81452 18 207 5.49E-60 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS03495 f7a0f7666fc6327d47dec39f4c091c38 209 Gene3D G3DSA:1.20.120.80 24 209 1.2E-51 T 29-03-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS05320 5543d5e228d7c4ca33bb947908cf6f50 158 Gene3D G3DSA:1.10.10.10 8 128 7.3E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS05320 5543d5e228d7c4ca33bb947908cf6f50 158 Pfam PF12802 MarR family 37 94 8.7E-11 T 29-03-2018 Y880_RS05320 5543d5e228d7c4ca33bb947908cf6f50 158 SMART SM00347 31 131 9.0E-12 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS05320 5543d5e228d7c4ca33bb947908cf6f50 158 SUPERFAMILY SSF46785 6 143 1.08E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 Pfam PF01011 PQQ enzyme repeat 532 568 1.2E-10 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 Pfam PF13360 PQQ-like domain 82 339 1.2E-16 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 34 586 1.3E-237 T 29-03-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 Gene3D G3DSA:2.140.10.10 32 615 3.5E-110 T 29-03-2018 Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 SUPERFAMILY SSF50998 46 609 2.22E-148 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 51 79 - T 29-03-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 282 303 - T 29-03-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 SMART SM00564 452 517 540.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 SMART SM00564 147 178 1.4E-5 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 SMART SM00564 192 235 200.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 SMART SM00564 527 558 6.8E-7 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 SMART SM00564 97 129 8.2E-8 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS07070 99800e6e1ceb09790ddaea93449603c9 623 SMART SM00564 368 397 760.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS18155 557d3117017e359f7b79945f0f171c09 340 SUPERFAMILY SSF52540 112 293 2.93E-40 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS18155 557d3117017e359f7b79945f0f171c09 340 Gene3D G3DSA:3.40.50.300 109 316 6.4E-29 T 29-03-2018 Y880_RS18155 557d3117017e359f7b79945f0f171c09 340 Pfam PF02562 PhoH-like protein 113 316 7.1E-95 T 29-03-2018 IPR003714 PhoH-like protein GO:0005524 Y880_RS14575 d72d24365d10e0294e6f5667fa114973 341 Pfam PF07690 Major Facilitator Superfamily 8 340 6.0E-44 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS14575 d72d24365d10e0294e6f5667fa114973 341 Gene3D G3DSA:1.20.1250.20 189 341 1.4E-13 T 29-03-2018 Y880_RS14575 d72d24365d10e0294e6f5667fa114973 341 Gene3D G3DSA:1.20.1250.20 2 186 3.9E-30 T 29-03-2018 Y880_RS14575 d72d24365d10e0294e6f5667fa114973 341 SUPERFAMILY SSF103473 5 340 9.94E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS18675 aebd8e203d7a39148a15f052df159c2e 189 SUPERFAMILY SSF49401 33 189 2.68E-18 T 29-03-2018 IPR008966 Adhesion domain Y880_RS18675 aebd8e203d7a39148a15f052df159c2e 189 Gene3D G3DSA:2.60.40.1090 31 189 4.8E-24 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS00685 f9c14d4175e5a1217c3168f8b0103aa9 407 Pfam PF00266 Aminotransferase class-V 26 393 9.2E-31 T 29-03-2018 IPR000192 Aminotransferase class V domain Y880_RS00685 f9c14d4175e5a1217c3168f8b0103aa9 407 Gene3D G3DSA:3.90.1150.10 281 400 2.6E-12 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS00685 f9c14d4175e5a1217c3168f8b0103aa9 407 Gene3D G3DSA:3.40.640.10 34 280 2.5E-26 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS00685 f9c14d4175e5a1217c3168f8b0103aa9 407 SUPERFAMILY SSF53383 9 403 1.02E-56 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS08090 2c5ab990d5f20c08abd0e10ff3e5a452 358 Gene3D G3DSA:2.40.30.40 76 171 1.0E-17 T 29-03-2018 IPR023367 Peptidase M42, domain 2 Y880_RS08090 2c5ab990d5f20c08abd0e10ff3e5a452 358 Gene3D G3DSA:3.40.630.10 192 356 2.0E-9 T 29-03-2018 Y880_RS08090 2c5ab990d5f20c08abd0e10ff3e5a452 358 Pfam PF05343 M42 glutamyl aminopeptidase 62 343 7.9E-39 T 29-03-2018 IPR008007 Peptidase M42 Y880_RS08090 2c5ab990d5f20c08abd0e10ff3e5a452 358 SUPERFAMILY SSF53187 183 352 3.14E-38 T 29-03-2018 Y880_RS08090 2c5ab990d5f20c08abd0e10ff3e5a452 358 SUPERFAMILY SSF53187 7 87 3.14E-38 T 29-03-2018 Y880_RS08090 2c5ab990d5f20c08abd0e10ff3e5a452 358 PIRSF PIRSF001123 2 357 1.1E-35 T 29-03-2018 IPR008007 Peptidase M42 Y880_RS08090 2c5ab990d5f20c08abd0e10ff3e5a452 358 SUPERFAMILY SSF101821 78 191 2.29E-11 T 29-03-2018 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Hamap MF_00195 GTPase Der [der]. 2 456 38.055 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 197 363 6.3E-24 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 153 1.2E-20 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 SUPERFAMILY SSF52540 4 168 7.72E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Gene3D G3DSA:3.30.300.20 387 454 1.0E-24 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Gene3D G3DSA:1.20.120.430 68 265 4.6E-47 T 29-03-2018 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Gene3D G3DSA:1.20.120.430 266 386 4.9E-13 T 29-03-2018 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 373 453 4.9E-25 T 29-03-2018 IPR032859 GTPase Der, C-terminal KH-domain-like Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 PIRSF PIRSF006485 1 461 2.8E-171 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 4.4E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.4E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Pfam PF01926 50S ribosome-binding GTPase 5 119 8.4E-28 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Pfam PF01926 50S ribosome-binding GTPase 199 317 2.8E-24 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 Gene3D G3DSA:1.20.120.430 2 67 4.8E-16 T 29-03-2018 Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 SUPERFAMILY SSF52540 195 459 4.09E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 SUPERFAMILY SSF52540 137 166 4.09E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17200 437b8899cbaf125cb63f2250795bf699 493 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 453 1.1E-173 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 Y880_RS09040 618922e87eb2a5663a95ac49507998a2 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 306 6.6E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS09040 618922e87eb2a5663a95ac49507998a2 310 SUPERFAMILY SSF161098 70 295 1.7E-48 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS09040 618922e87eb2a5663a95ac49507998a2 310 Gene3D G3DSA:1.20.58.370 14 58 6.5E-4 T 29-03-2018 IPR035277 Maltose transport system permease protein MalF N-terminal domain Y880_RS09040 618922e87eb2a5663a95ac49507998a2 310 Gene3D G3DSA:1.10.3720.10 77 307 1.8E-41 T 29-03-2018 Y880_RS04470 fd2c73c66341674a1885e51dc8d324c2 421 SUPERFAMILY SSF82544 4 418 1.26E-146 T 29-03-2018 Y880_RS04470 fd2c73c66341674a1885e51dc8d324c2 421 Gene3D G3DSA:3.40.1480.10 243 421 9.0E-62 T 29-03-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 Y880_RS04470 fd2c73c66341674a1885e51dc8d324c2 421 Gene3D G3DSA:3.40.50.10180 11 242 1.0E-82 T 29-03-2018 Y880_RS04470 fd2c73c66341674a1885e51dc8d324c2 421 Pfam PF05161 MOFRL family 307 412 1.9E-35 T 29-03-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 Y880_RS04470 fd2c73c66341674a1885e51dc8d324c2 421 Pfam PF13660 Domain of unknown function (DUF4147) 9 228 3.8E-79 T 29-03-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 Y880_RS10485 1ee4138acca8e6cadf4b340408743c65 208 Gene3D G3DSA:2.50.20.10 24 208 4.6E-46 T 29-03-2018 Y880_RS10485 1ee4138acca8e6cadf4b340408743c65 208 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 7 205 2.0E-32 T 29-03-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Y880_RS10485 1ee4138acca8e6cadf4b340408743c65 208 SUPERFAMILY SSF89392 26 207 7.85E-53 T 29-03-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Y880_RS10485 1ee4138acca8e6cadf4b340408743c65 208 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 36 198 6.5E-57 T 29-03-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Y880_RS10485 1ee4138acca8e6cadf4b340408743c65 208 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 11 208 30.367 T 29-03-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Y880_RS17210 f90badcad704fa78420c97cfeaae58a6 214 Gene3D G3DSA:1.25.40.10 30 210 1.1E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17210 f90badcad704fa78420c97cfeaae58a6 214 SUPERFAMILY SSF48452 99 196 4.37E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS17210 f90badcad704fa78420c97cfeaae58a6 214 Pfam PF09976 Tetratricopeptide repeat-like domain 14 210 1.8E-61 T 29-03-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 Y880_RS17210 f90badcad704fa78420c97cfeaae58a6 214 PIRSF PIRSF006170 2 214 2.0E-68 T 29-03-2018 IPR026039 Uncharacterised protein family UPF0070 Y880_RS07280 84797f0db772d3651a40f5f814a16b1b 140 Gene3D G3DSA:3.10.180.10 3 135 1.1E-24 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS07280 84797f0db772d3651a40f5f814a16b1b 140 SUPERFAMILY SSF54593 5 130 3.62E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS07280 84797f0db772d3651a40f5f814a16b1b 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 124 3.9E-9 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS15575 637ac4a0dfef8fd23939b3c24d5b4992 344 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 333 2.6E-139 T 29-03-2018 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 Y880_RS15575 637ac4a0dfef8fd23939b3c24d5b4992 344 Pfam PF03116 NQR2, RnfD, RnfE family 7 332 2.8E-102 T 29-03-2018 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 Y880_RS15575 637ac4a0dfef8fd23939b3c24d5b4992 344 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 3 334 26.736 T 29-03-2018 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 Y880_RS27710 5e3c639b0503e3a4321cde587720e591 352 Pfam PF13416 Bacterial extracellular solute-binding protein 51 316 9.0E-42 T 29-03-2018 Y880_RS27710 5e3c639b0503e3a4321cde587720e591 352 Gene3D G3DSA:3.40.190.10 147 305 5.2E-31 T 29-03-2018 Y880_RS27710 5e3c639b0503e3a4321cde587720e591 352 SUPERFAMILY SSF53850 31 349 6.52E-64 T 29-03-2018 Y880_RS27710 5e3c639b0503e3a4321cde587720e591 352 Gene3D G3DSA:3.40.190.10 23 146 5.4E-11 T 29-03-2018 Y880_RS23175 445d0d63298a5433fb056e824415a552 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 1.5E-20 T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23175 445d0d63298a5433fb056e824415a552 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23175 445d0d63298a5433fb056e824415a552 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 9.4E-48 T 29-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23175 445d0d63298a5433fb056e824415a552 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.083 T 29-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23175 445d0d63298a5433fb056e824415a552 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 3.4E-23 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal Y880_RS23175 445d0d63298a5433fb056e824415a552 148 Gene3D G3DSA:3.10.430.100 63 147 3.5E-24 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal Y880_RS23175 445d0d63298a5433fb056e824415a552 148 Gene3D G3DSA:3.40.5.10 1 49 8.6E-21 T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23175 445d0d63298a5433fb056e824415a552 148 SUPERFAMILY SSF55653 60 148 4.45E-24 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal Y880_RS23175 445d0d63298a5433fb056e824415a552 148 SUPERFAMILY SSF55658 1 56 4.53E-18 T 29-03-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Y880_RS10280 7aa89dd996538139cbbda9db43970899 288 SUPERFAMILY SSF140959 31 287 4.05E-100 T 29-03-2018 Y880_RS10280 7aa89dd996538139cbbda9db43970899 288 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 25 288 40.526 T 29-03-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 Y880_RS10280 7aa89dd996538139cbbda9db43970899 288 TIGRFAM TIGR03036 trp_2_3_diox: tryptophan 2,3-dioxygenase 25 288 7.0E-129 T 29-03-2018 IPR017485 Tryptophan 2,3-dioxygenase, bacterial GO:0004833|GO:0019441 KEGG: 00380+1.13.11.11 Y880_RS10280 7aa89dd996538139cbbda9db43970899 288 Pfam PF03301 Tryptophan 2,3-dioxygenase 21 212 2.9E-42 T 29-03-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 Y880_RS03020 1d242e14c4b8a82846ddf4dd2424bfff 282 Gene3D G3DSA:3.30.200.20 11 89 1.3E-5 T 29-03-2018 Y880_RS03020 1d242e14c4b8a82846ddf4dd2424bfff 282 Gene3D G3DSA:3.90.1200.10 91 256 1.7E-8 T 29-03-2018 Y880_RS03020 1d242e14c4b8a82846ddf4dd2424bfff 282 Pfam PF01636 Phosphotransferase enzyme family 15 242 7.7E-26 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS03020 1d242e14c4b8a82846ddf4dd2424bfff 282 PIRSF PIRSF000707 6 278 7.0E-11 T 29-03-2018 IPR016259 Hygromycin-B kinase KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Y880_RS03020 1d242e14c4b8a82846ddf4dd2424bfff 282 SUPERFAMILY SSF56112 10 246 4.29E-20 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS08075 e623c720f0653bd587642d54772b9ccc 150 SUPERFAMILY SSF47240 8 148 5.68E-8 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS08075 e623c720f0653bd587642d54772b9ccc 150 PIRSF PIRSF029477 1 150 4.6E-73 T 29-03-2018 IPR016920 Uncharacterised conserved protein UCP029477 Y880_RS08075 e623c720f0653bd587642d54772b9ccc 150 Pfam PF09537 Domain of unknown function (DUF2383) 9 118 1.6E-39 T 29-03-2018 IPR019052 Domain of unknown function DUF2383 Y880_RS08075 e623c720f0653bd587642d54772b9ccc 150 TIGRFAM TIGR02284 TIGR02284: conserved hypothetical protein 10 146 5.2E-46 T 29-03-2018 IPR011971 Conserved hypothetical protein CHP02284 Y880_RS08075 e623c720f0653bd587642d54772b9ccc 150 Gene3D G3DSA:1.20.1260.10 1 150 6.7E-29 T 29-03-2018 IPR012347 Ferritin-related Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 SUPERFAMILY SSF53681 111 257 1.31E-37 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 TIGRFAM TIGR00067 glut_race: glutamate racemase 8 246 1.8E-65 T 29-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 Hamap MF_00258 Glutamate racemase [murI]. 6 257 37.126 T 29-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 182 192 - T 29-03-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 SUPERFAMILY SSF53681 8 109 3.6E-32 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 217 4.3E-37 T 29-03-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 Gene3D G3DSA:3.40.50.1860 119 264 4.8E-43 T 29-03-2018 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 72 80 - T 29-03-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y880_RS21680 d40a0df3071453aa4520b1ef807b6275 265 Gene3D G3DSA:3.40.50.1860 4 118 4.0E-33 T 29-03-2018 Y880_RS07525 c07e8d98571ef6e983e650c40c6dd1ca 880 SUPERFAMILY SSF56935 43 241 4.88E-107 T 29-03-2018 Y880_RS07525 c07e8d98571ef6e983e650c40c6dd1ca 880 SUPERFAMILY SSF56935 299 347 4.88E-107 T 29-03-2018 Y880_RS07525 c07e8d98571ef6e983e650c40c6dd1ca 880 SUPERFAMILY SSF56935 381 880 4.88E-107 T 29-03-2018 Y880_RS07525 c07e8d98571ef6e983e650c40c6dd1ca 880 Gene3D G3DSA:2.170.130.10 35 171 7.1E-31 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS07525 c07e8d98571ef6e983e650c40c6dd1ca 880 Pfam PF00593 TonB dependent receptor 363 879 1.3E-53 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS07525 c07e8d98571ef6e983e650c40c6dd1ca 880 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 170 1.9E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS07525 c07e8d98571ef6e983e650c40c6dd1ca 880 Gene3D G3DSA:2.40.170.20 172 880 6.6E-81 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03305 2dc440caafa38a7185f800c54be786dc 99 Gene3D G3DSA:1.20.1250.20 1 99 1.9E-16 T 29-03-2018 Y880_RS03305 2dc440caafa38a7185f800c54be786dc 99 SUPERFAMILY SSF103473 2 99 9.42E-20 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03305 2dc440caafa38a7185f800c54be786dc 99 Pfam PF07690 Major Facilitator Superfamily 14 95 4.9E-13 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS20195 6c1b151816c261e4f6e1b16748439f60 227 Pfam PF00072 Response regulator receiver domain 3 113 6.9E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS20195 6c1b151816c261e4f6e1b16748439f60 227 SMART SM00862 146 220 2.0E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS20195 6c1b151816c261e4f6e1b16748439f60 227 SUPERFAMILY SSF52172 1 173 2.7E-43 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS20195 6c1b151816c261e4f6e1b16748439f60 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 2.7E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS20195 6c1b151816c261e4f6e1b16748439f60 227 Gene3D G3DSA:3.40.50.2300 1 122 5.2E-40 T 29-03-2018 Y880_RS20195 6c1b151816c261e4f6e1b16748439f60 227 Gene3D G3DSA:1.10.10.10 123 226 2.4E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20195 6c1b151816c261e4f6e1b16748439f60 227 SMART SM00448 1 113 4.5E-46 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS15445 4532ea4dfb8d133d64bed24ab113429a 571 Pfam PF05977 Transmembrane secretion effector 26 543 1.0E-219 T 29-03-2018 IPR010290 Transmembrane secretion effector Y880_RS15445 4532ea4dfb8d133d64bed24ab113429a 571 SUPERFAMILY SSF103473 36 418 5.89E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS15445 4532ea4dfb8d133d64bed24ab113429a 571 Gene3D G3DSA:1.20.1250.20 236 421 9.9E-15 T 29-03-2018 Y880_RS15445 4532ea4dfb8d133d64bed24ab113429a 571 Gene3D G3DSA:1.20.1250.20 23 223 1.5E-20 T 29-03-2018 Y880_RS20880 b68bcbdc5f9c89afd2d56f5601d5bd51 753 SUPERFAMILY SSF56935 75 753 8.98E-134 T 29-03-2018 Y880_RS20880 b68bcbdc5f9c89afd2d56f5601d5bd51 753 Gene3D G3DSA:2.170.130.10 44 186 1.2E-22 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS20880 b68bcbdc5f9c89afd2d56f5601d5bd51 753 Gene3D G3DSA:2.40.170.20 192 753 2.6E-89 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS20880 b68bcbdc5f9c89afd2d56f5601d5bd51 753 Pfam PF00593 TonB dependent receptor 257 751 3.0E-59 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS20880 b68bcbdc5f9c89afd2d56f5601d5bd51 753 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 82 753 3.6E-98 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS20880 b68bcbdc5f9c89afd2d56f5601d5bd51 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 81 178 2.7E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS27735 6694f8a07393a2dfb213778d0ad4267e 260 SUPERFAMILY SSF100950 2 245 3.87E-72 T 29-03-2018 Y880_RS27735 6694f8a07393a2dfb213778d0ad4267e 260 Pfam PF01144 Coenzyme A transferase 8 217 1.6E-48 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS27735 6694f8a07393a2dfb213778d0ad4267e 260 Gene3D G3DSA:3.40.1080.10 1 254 2.4E-53 T 29-03-2018 Y880_RS27735 6694f8a07393a2dfb213778d0ad4267e 260 SMART SM00882 8 217 9.4E-41 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS00110 4f44850f72523bb6f546f5f653365cc2 366 Pfam PF12849 PBP superfamily domain 43 312 1.4E-32 T 29-03-2018 IPR024370 PBP domain Y880_RS00110 4f44850f72523bb6f546f5f653365cc2 366 SUPERFAMILY SSF53850 22 364 1.17E-61 T 29-03-2018 Y880_RS00110 4f44850f72523bb6f546f5f653365cc2 366 Gene3D G3DSA:3.40.190.10 111 276 3.6E-29 T 29-03-2018 Y880_RS00110 4f44850f72523bb6f546f5f653365cc2 366 Gene3D G3DSA:3.40.190.10 277 353 2.4E-6 T 29-03-2018 Y880_RS27385 14d3b6ace13a1e7ec250e77444a61c93 239 Pfam PF00775 Dioxygenase 49 230 6.5E-57 T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y880_RS27385 14d3b6ace13a1e7ec250e77444a61c93 239 SUPERFAMILY SSF49482 11 238 1.15E-74 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y880_RS27385 14d3b6ace13a1e7ec250e77444a61c93 239 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 81 109 - T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y880_RS27385 14d3b6ace13a1e7ec250e77444a61c93 239 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 12 43 1.1E-14 T 29-03-2018 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 Y880_RS27385 14d3b6ace13a1e7ec250e77444a61c93 239 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 17 238 1.5E-105 T 29-03-2018 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 Y880_RS27385 14d3b6ace13a1e7ec250e77444a61c93 239 Gene3D G3DSA:2.60.130.10 2 239 5.1E-63 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 SUPERFAMILY SSF53850 92 289 3.26E-36 T 29-03-2018 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 Pfam PF03466 LysR substrate binding domain 91 288 6.3E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 7 285 4.4E-121 T 29-03-2018 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 4.6E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 Gene3D G3DSA:1.10.10.10 1 89 1.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 Gene3D G3DSA:3.40.190.10 90 174 2.9E-19 T 29-03-2018 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 Gene3D G3DSA:3.40.190.10 175 264 1.4E-19 T 29-03-2018 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.5E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.5E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.5E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS04885 00f1f6d2a7c01177091642cdf055c6af 293 SUPERFAMILY SSF46785 3 99 1.43E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02625 dabe725060d671c3a2edb5902e508834 122 Pfam PF09961 Uncharacterized protein conserved in bacteria (DUF2195) 6 121 6.7E-37 T 29-03-2018 IPR018696 Protein of unknown function DUF2195 Y880_RS03505 663000ea249daa0e8e0b6fa48708ff5b 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 282 4.8E-88 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y880_RS03505 663000ea249daa0e8e0b6fa48708ff5b 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 29-03-2018 IPR030470 UbiA prenyltransferase conserved site Y880_RS03505 663000ea249daa0e8e0b6fa48708ff5b 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 284 17.448 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y880_RS03505 663000ea249daa0e8e0b6fa48708ff5b 296 Pfam PF01040 UbiA prenyltransferase family 19 266 3.1E-57 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Y880_RS05900 f4043cb47a34e3ea9b3d9b8cde26de5f 341 Gene3D G3DSA:2.40.160.20 67 305 6.9E-5 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS09365 3de0997bd85f470afe8a0b5592f2628e 403 Pfam PF03929 PepSY-associated TM region 12 366 2.9E-60 T 29-03-2018 IPR005625 PepSY-associated TM protein Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 SUPERFAMILY SSF46589 1 112 6.28E-31 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.0E-30 T 29-03-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 41.259 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 218 402 4.5E-36 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PIRSF PIRSF001529 1 426 3.6E-180 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 318 331 7.7E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 266 278 7.7E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 278 291 7.7E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 353 369 7.7E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 335 351 7.7E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 2.3E-172 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Gene3D G3DSA:1.10.287.40 2 104 6.4E-26 T 29-03-2018 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 SUPERFAMILY SSF55681 116 423 2.49E-102 T 29-03-2018 Y880_RS10475 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Gene3D G3DSA:3.30.930.10 105 426 3.0E-100 T 29-03-2018 Y880_RS28060 3df2f6207d4c82364fd3be6fa16df26f 461 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 395 415 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS28060 3df2f6207d4c82364fd3be6fa16df26f 461 Pfam PF00474 Sodium:solute symporter family 32 413 1.9E-34 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 SUPERFAMILY SSF50692 649 768 2.49E-14 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 Gene3D G3DSA:3.40.50.740 334 621 7.8E-46 T 29-03-2018 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 Pfam PF01568 Molydopterin dinucleotide binding domain 652 737 1.7E-5 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 Pfam PF00384 Molybdopterin oxidoreductase 318 495 9.1E-10 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 Pfam PF00384 Molybdopterin oxidoreductase 113 253 2.7E-11 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 17 765 2.2E-288 T 29-03-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 PIRSF PIRSF000144 2 770 0.0 T 29-03-2018 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 Gene3D G3DSA:2.40.40.20 649 771 9.9E-19 T 29-03-2018 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 Gene3D G3DSA:3.40.50.740 114 285 6.4E-40 T 29-03-2018 Y880_RS24495 6a68a99dda9e3678e8655cd85cb5d7b0 773 SUPERFAMILY SSF53706 51 634 4.71E-147 T 29-03-2018 Y880_RS24895 3fbb99c45f8402b6d22f0072347eeede 412 Gene3D G3DSA:1.25.40.10 137 224 6.3E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS24895 3fbb99c45f8402b6d22f0072347eeede 412 Pfam PF07219 HemY protein N-terminus 27 131 1.2E-25 T 29-03-2018 IPR010817 HemY, N-terminal Y880_RS24895 3fbb99c45f8402b6d22f0072347eeede 412 SUPERFAMILY SSF48452 270 365 4.67E-17 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS24895 3fbb99c45f8402b6d22f0072347eeede 412 SUPERFAMILY SSF48452 92 187 4.67E-17 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS24895 3fbb99c45f8402b6d22f0072347eeede 412 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 5 393 4.8E-107 T 29-03-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 Y880_RS24895 3fbb99c45f8402b6d22f0072347eeede 412 Gene3D G3DSA:1.25.40.10 227 401 4.0E-15 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS24895 3fbb99c45f8402b6d22f0072347eeede 412 Gene3D G3DSA:1.25.40.10 31 136 3.5E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS04850 a8f96657dbb08f5ce2906e6c0198cc0d 436 Pfam PF01266 FAD dependent oxidoreductase 38 391 4.6E-51 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS04850 a8f96657dbb08f5ce2906e6c0198cc0d 436 SUPERFAMILY SSF51905 355 413 1.34E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04850 a8f96657dbb08f5ce2906e6c0198cc0d 436 SUPERFAMILY SSF51905 37 264 1.34E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04850 a8f96657dbb08f5ce2906e6c0198cc0d 436 Gene3D G3DSA:3.40.50.720 36 399 6.6E-31 T 29-03-2018 Y880_RS04315 0ae4b956e12b2430e2cea07c9fa04b09 240 Gene3D G3DSA:3.60.140.10 6 240 2.2E-53 T 29-03-2018 Y880_RS04315 0ae4b956e12b2430e2cea07c9fa04b09 240 SUPERFAMILY SSF64438 26 224 3.11E-47 T 29-03-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Y880_RS04315 0ae4b956e12b2430e2cea07c9fa04b09 240 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 17 226 6.5E-46 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 SUPERFAMILY SSF55729 1 193 2.75E-31 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 115 136 4.1E-25 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 4.1E-25 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 137 158 4.1E-25 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 159 176 4.1E-25 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 4.1E-25 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 65 83 4.1E-25 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 42 64 4.1E-25 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 Pfam PF00765 Autoinducer synthase 13 179 1.7E-20 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 Gene3D G3DSA:3.40.630.30 1 191 1.7E-26 T 29-03-2018 Y880_RS15505 07ab6d9a348c41d361fb0ab6e3038aaf 201 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 51 - T 29-03-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y880_RS00185 3c45160ab2efa90cd7879087f4c3dbe5 438 SUPERFAMILY SSF103473 16 424 3.92E-59 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS00185 3c45160ab2efa90cd7879087f4c3dbe5 438 ProSitePatterns PS00217 Sugar transport proteins signature 2. 128 153 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS00185 3c45160ab2efa90cd7879087f4c3dbe5 438 Gene3D G3DSA:1.20.1250.20 9 218 9.0E-24 T 29-03-2018 Y880_RS00185 3c45160ab2efa90cd7879087f4c3dbe5 438 Gene3D G3DSA:1.20.1250.20 223 423 5.0E-17 T 29-03-2018 Y880_RS00185 3c45160ab2efa90cd7879087f4c3dbe5 438 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS00185 3c45160ab2efa90cd7879087f4c3dbe5 438 Pfam PF00083 Sugar (and other) transporter 20 224 1.1E-19 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS00185 3c45160ab2efa90cd7879087f4c3dbe5 438 Pfam PF00083 Sugar (and other) transporter 229 397 3.2E-8 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 1 309 32.857 T 29-03-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 SUPERFAMILY SSF50037 263 309 1.28E-6 T 29-03-2018 IPR008988 Transcriptional repressor, C-terminal Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 SUPERFAMILY SSF46785 3 55 4.62E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 Pfam PF08279 HTH domain 2 54 5.6E-9 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 Pfam PF03099 Biotin/lipoate A/B protein ligase family 89 201 2.7E-18 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 Gene3D G3DSA:2.30.30.100 263 309 1.8E-8 T 29-03-2018 Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 Gene3D G3DSA:1.10.10.10 1 59 1.7E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 73 308 1.1E-56 T 29-03-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780 Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 SUPERFAMILY SSF55681 71 260 5.16E-60 T 29-03-2018 Y880_RS19670 fa3af2bc6fbb9250d06f5797c8bc1f91 312 Gene3D G3DSA:3.30.930.10 62 261 4.1E-64 T 29-03-2018 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 SUPERFAMILY SSF56235 26 553 4.82E-172 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 429 444 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 364 382 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 388 406 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 285 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 236 252 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 453 470 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 142 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 52 77 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 142 161 2.8E-73 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 32 547 1.2E-155 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 364 388 - T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS03600 42c2bfbc437201dc135e62369a83689a 557 Pfam PF01019 Gamma-glutamyltranspeptidase 45 550 3.1E-175 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28055 ef43e143add52dce1967c0948b068434 392 Pfam PF01610 Transposase 270 387 3.0E-9 T 29-03-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain Y880_RS28055 ef43e143add52dce1967c0948b068434 392 Pfam PF00487 Fatty acid desaturase 11 214 1.1E-12 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y880_RS14670 4f635d430da80f8fea2df737fcac923a 692 Pfam PF04185 Phosphoesterase family 48 422 2.5E-133 T 29-03-2018 IPR007312 Phosphoesterase GO:0016788 Y880_RS14670 4f635d430da80f8fea2df737fcac923a 692 Pfam PF05506 Domain of unknown function (DUF756) 590 672 6.7E-19 T 29-03-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y880_RS14670 4f635d430da80f8fea2df737fcac923a 692 Pfam PF05506 Domain of unknown function (DUF756) 490 577 4.7E-20 T 29-03-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y880_RS14670 4f635d430da80f8fea2df737fcac923a 692 Gene3D G3DSA:3.40.720.10 131 426 1.9E-19 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS14670 4f635d430da80f8fea2df737fcac923a 692 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 5 686 1.1E-300 T 29-03-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y880_RS27870 a33f2d7be5e4321316ec6d274b895c4f 496 Hamap MF_01983 UbiD-like decarboxylase. 4 493 51.526 T 29-03-2018 IPR032903 UbiD-like decarboxylase/ferulic acid decarboxylase 1 Y880_RS27870 a33f2d7be5e4321316ec6d274b895c4f 496 SUPERFAMILY SSF50475 7 314 3.61E-88 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS27870 a33f2d7be5e4321316ec6d274b895c4f 496 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 13 428 1.5E-115 T 29-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y880_RS27870 a33f2d7be5e4321316ec6d274b895c4f 496 SUPERFAMILY SSF143968 317 493 2.22E-31 T 29-03-2018 Y880_RS27870 a33f2d7be5e4321316ec6d274b895c4f 496 Gene3D G3DSA:3.40.1670.10 315 470 1.4E-29 T 29-03-2018 Y880_RS27870 a33f2d7be5e4321316ec6d274b895c4f 496 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 8 455 9.3E-91 T 29-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 Pfam PF01047 MarR family 69 113 1.3E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 SUPERFAMILY SSF46785 31 153 5.55E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 SMART SM00347 46 148 1.3E-14 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 5.6E-7 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 5.6E-7 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 5.6E-7 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 5.6E-7 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS11975 9241c4aaacc7d2dd1f5d28c360443d56 162 Gene3D G3DSA:1.10.10.10 27 161 9.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03180 fe851de032b31d8595d74e17d44d10d3 240 Gene3D G3DSA:3.40.50.300 1 239 5.1E-68 T 29-03-2018 Y880_RS03180 fe851de032b31d8595d74e17d44d10d3 240 SMART SM00382 26 213 1.0E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS03180 fe851de032b31d8595d74e17d44d10d3 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS03180 fe851de032b31d8595d74e17d44d10d3 240 Pfam PF00005 ABC transporter 18 165 7.8E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS03180 fe851de032b31d8595d74e17d44d10d3 240 PIRSF PIRSF039085 1 240 4.1E-103 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y880_RS03180 fe851de032b31d8595d74e17d44d10d3 240 SUPERFAMILY SSF52540 1 234 9.13E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19965 da68641408c1d213d625a3194c5c236d 194 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 6 188 5.9E-56 T 29-03-2018 IPR006286 Peptidase C56, PfpI Y880_RS19965 da68641408c1d213d625a3194c5c236d 194 Pfam PF01965 DJ-1/PfpI family 5 186 1.9E-50 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS19965 da68641408c1d213d625a3194c5c236d 194 SUPERFAMILY SSF52317 5 189 4.16E-53 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS19965 da68641408c1d213d625a3194c5c236d 194 Gene3D G3DSA:3.40.50.880 1 191 4.9E-44 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS18825 56f56c747d091ef0b6ad1f30b1c784c6 461 Gene3D G3DSA:3.40.50.450 126 455 2.6E-97 T 29-03-2018 Y880_RS18825 56f56c747d091ef0b6ad1f30b1c784c6 461 Pfam PF14793 Domain of unknown function (DUF4478) 10 115 2.0E-44 T 29-03-2018 IPR027820 Domain of unknown function DUF4478 Y880_RS18825 56f56c747d091ef0b6ad1f30b1c784c6 461 SUPERFAMILY SSF102405 122 331 2.44E-41 T 29-03-2018 Y880_RS18825 56f56c747d091ef0b6ad1f30b1c784c6 461 Gene3D G3DSA:3.30.1850.10 9 117 4.4E-46 T 29-03-2018 IPR027820 Domain of unknown function DUF4478 Y880_RS18825 56f56c747d091ef0b6ad1f30b1c784c6 461 Pfam PF03641 Possible lysine decarboxylase 192 331 2.0E-31 T 29-03-2018 IPR031100 LOG family Y880_RS18825 56f56c747d091ef0b6ad1f30b1c784c6 461 Pfam PF11892 Domain of unknown function (DUF3412) 335 456 6.7E-56 T 29-03-2018 IPR021826 Domain of unknown function DUF3412 Y880_RS26205 9b337c935c99436850cf4fbe40075df9 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 224 5.9E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS26205 9b337c935c99436850cf4fbe40075df9 225 Gene3D G3DSA:1.10.3720.10 13 225 2.0E-31 T 29-03-2018 Y880_RS26205 9b337c935c99436850cf4fbe40075df9 225 SUPERFAMILY SSF161098 16 212 8.11E-42 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 Pfam PF12833 Helix-turn-helix domain 261 337 6.3E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 211 2.0E-40 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 Gene3D G3DSA:1.10.10.60 287 338 1.1E-11 T 29-03-2018 Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 SMART SM00342 254 336 3.6E-26 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 336 1.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 305 320 1.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 SUPERFAMILY SSF46689 289 337 4.18E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00900 faf70e1d522bf27ebfbde00aaf833cd7 339 Gene3D G3DSA:1.10.10.60 234 286 0.023 T 29-03-2018 Y880_RS24230 2a5bdfde5f4e2dd4c066590659a1b6a9 272 Pfam PF02517 CAAX protease self-immunity 169 258 1.1E-19 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 Y880_RS25980 f3e4ed4e8cce02ff4386ad2a7da049fb 105 Pfam PF09498 Protein of unknown function (DUF2388) 37 104 5.0E-32 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS25980 f3e4ed4e8cce02ff4386ad2a7da049fb 105 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 104 2.5E-42 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS30035 d56352d07d73f02eb74d7b5f2fce9884 447 Gene3D G3DSA:2.70.70.10 273 447 1.9E-40 T 29-03-2018 Y880_RS30035 d56352d07d73f02eb74d7b5f2fce9884 447 Gene3D G3DSA:3.10.350.10 71 156 0.003 T 29-03-2018 Y880_RS30035 d56352d07d73f02eb74d7b5f2fce9884 447 SUPERFAMILY SSF51261 156 404 2.41E-73 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS30035 d56352d07d73f02eb74d7b5f2fce9884 447 Pfam PF01551 Peptidase family M23 307 403 1.2E-32 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS30035 d56352d07d73f02eb74d7b5f2fce9884 447 Pfam PF04225 Opacity-associated protein A LysM-like domain 81 161 5.0E-11 T 29-03-2018 IPR007340 Opacity-associated protein A Y880_RS01860 5ed69bb9fb4d39067f2f762594bef79c 128 Gene3D G3DSA:2.40.50.140 58 118 5.7E-6 T 29-03-2018 Y880_RS01860 5ed69bb9fb4d39067f2f762594bef79c 128 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 54 109 1.5E-11 T 29-03-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Y880_RS01860 5ed69bb9fb4d39067f2f762594bef79c 128 SUPERFAMILY SSF50249 14 114 8.57E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS01860 5ed69bb9fb4d39067f2f762594bef79c 128 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 20 53 7.0E-6 T 29-03-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 ProSitePatterns PS00123 Alkaline phosphatase active site. 125 133 - T 29-03-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 125 140 3.8E-47 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 225 235 3.8E-47 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 324 353 3.8E-47 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 68 88 3.8E-47 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 162 182 3.8E-47 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 SMART SM00098 69 475 2.1E-186 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 Gene3D G3DSA:3.40.720.10 30 476 5.8E-129 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 SUPERFAMILY SSF53649 40 474 2.45E-134 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 Pfam PF00245 Alkaline phosphatase 68 433 9.6E-118 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS14535 b080cf82cb8a0a8b2648e58ce670262b 476 Pfam PF00245 Alkaline phosphatase 435 473 5.7E-7 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y880_RS21220 4a2ef102f63dae56db517cd1a2b08b3d 108 SUPERFAMILY SSF57716 75 106 1.24E-7 T 29-03-2018 Y880_RS21220 4a2ef102f63dae56db517cd1a2b08b3d 108 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 73 103 1.9E-9 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y880_RS21220 4a2ef102f63dae56db517cd1a2b08b3d 108 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 78 102 - T 29-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Y880_RS02950 c69ad7dbc5d9d86953eebddd8a3092ab 319 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 66 281 2.5E-16 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS02950 c69ad7dbc5d9d86953eebddd8a3092ab 319 Gene3D G3DSA:3.60.130.10 19 290 7.5E-29 T 29-03-2018 Y880_RS02950 c69ad7dbc5d9d86953eebddd8a3092ab 319 SUPERFAMILY SSF51197 23 289 3.62E-38 T 29-03-2018 Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 Gene3D G3DSA:1.10.10.60 265 316 1.9E-10 T 29-03-2018 Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 SUPERFAMILY SSF46689 212 263 3.76E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 SUPERFAMILY SSF52317 5 194 7.64E-44 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 SUPERFAMILY SSF46689 266 315 6.45E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 Pfam PF01965 DJ-1/PfpI family 5 173 7.2E-10 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 Gene3D G3DSA:1.10.10.60 230 264 8.5E-10 T 29-03-2018 Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 Gene3D G3DSA:3.40.50.880 2 229 1.4E-55 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 SMART SM00342 229 312 2.7E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17115 1c6830f2f4e138fa446d5d996f6fc97b 317 Pfam PF12833 Helix-turn-helix domain 235 313 9.5E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS21175 afffc16d668532bfbdd991c41758b044 103 SUPERFAMILY SSF141091 1 102 9.03E-39 T 29-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21175 afffc16d668532bfbdd991c41758b044 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 4.0E-40 T 29-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21175 afffc16d668532bfbdd991c41758b044 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.193 T 29-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21175 afffc16d668532bfbdd991c41758b044 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 7.6E-43 T 29-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS21175 afffc16d668532bfbdd991c41758b044 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 29-03-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23895 fe6b4748ea4c43b9e966898fc0f13814 111 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 92 4.1E-29 T 29-03-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Y880_RS23895 fe6b4748ea4c43b9e966898fc0f13814 111 Gene3D G3DSA:1.10.287.1080 1 98 7.3E-22 T 29-03-2018 Y880_RS23895 fe6b4748ea4c43b9e966898fc0f13814 111 SUPERFAMILY SSF101386 3 96 6.32E-25 T 29-03-2018 Y880_RS23895 fe6b4748ea4c43b9e966898fc0f13814 111 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 2 92 21.011 T 29-03-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Y880_RS23895 fe6b4748ea4c43b9e966898fc0f13814 111 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 95 1.6E-17 T 29-03-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 120 141 5.2E-52 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 80 108 5.2E-52 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 46 60 5.2E-52 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 213 233 5.2E-52 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 5.2E-52 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 ProSitePatterns PS00902 Glutamate 5-kinase signature. 211 228 - T 29-03-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 Hamap MF_00456 Glutamate 5-kinase [proB]. 9 263 37.347 T 29-03-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 SMART SM00359 281 364 3.2E-16 T 29-03-2018 IPR002478 PUA domain GO:0003723 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 Pfam PF01472 PUA domain 281 354 9.8E-23 T 29-03-2018 IPR002478 PUA domain GO:0003723 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 PIRSF PIRSF000729 4 372 4.3E-130 T 29-03-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 SUPERFAMILY SSF53633 9 261 6.41E-69 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 370 6.0E-130 T 29-03-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 Gene3D G3DSA:3.40.1160.10 1 269 4.1E-65 T 29-03-2018 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 Gene3D G3DSA:2.30.130.10 279 371 8.8E-30 T 29-03-2018 IPR002478 PUA domain GO:0003723 Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 SUPERFAMILY SSF88697 280 371 1.6E-24 T 29-03-2018 IPR015947 PUA-like domain Y880_RS21160 1409803a3405e07fa3f066efc2ae5149 372 Pfam PF00696 Amino acid kinase family 10 238 5.5E-47 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase Y880_RS05245 50e0f67a6a206e113478a94d53f320e5 345 Pfam PF01734 Patatin-like phospholipase 7 163 4.0E-16 T 29-03-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Y880_RS05245 50e0f67a6a206e113478a94d53f320e5 345 SUPERFAMILY SSF52151 239 339 1.18E-49 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Y880_RS05245 50e0f67a6a206e113478a94d53f320e5 345 SUPERFAMILY SSF52151 3 178 1.18E-49 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Y880_RS05245 50e0f67a6a206e113478a94d53f320e5 345 Gene3D G3DSA:3.40.1090.10 2 212 9.9E-36 T 29-03-2018 Y880_RS05595 adb7d7ef911ef7ff2df024bb6f32ce48 98 Pfam PF07216 LcrG protein 9 98 2.2E-41 T 29-03-2018 IPR009863 Type III secretion protein, LcrG Y880_RS05595 adb7d7ef911ef7ff2df024bb6f32ce48 98 TIGRFAM TIGR02573 LcrG_PcrG: type III secretion protein LcrG 9 98 1.4E-41 T 29-03-2018 IPR009863 Type III secretion protein, LcrG Y880_RS05595 adb7d7ef911ef7ff2df024bb6f32ce48 98 ProDom PD020116 PLASMID ACRG TYPE III G SECRETION REGULATOR LCRG LOCUS RESPONSE 9 98 2.0E-26 T 29-03-2018 IPR009863 Type III secretion protein, LcrG Y880_RS17150 0b910202f4de94ecd0da113d87f38a81 471 Gene3D G3DSA:1.20.950.20 150 278 6.0E-5 T 29-03-2018 Y880_RS17150 0b910202f4de94ecd0da113d87f38a81 471 Gene3D G3DSA:1.20.950.20 3 87 0.24 T 29-03-2018 Y880_RS17150 0b910202f4de94ecd0da113d87f38a81 471 Pfam PF03413 Peptidase propeptide and YPEB domain 299 355 7.0E-4 T 29-03-2018 IPR025711 PepSY domain Y880_RS17150 0b910202f4de94ecd0da113d87f38a81 471 Pfam PF03929 PepSY-associated TM region 16 410 6.1E-72 T 29-03-2018 IPR005625 PepSY-associated TM protein Y880_RS12180 e9d0d91273d68c9327599a895f0efcea 448 SUPERFAMILY SSF51569 2 444 1.1E-205 T 29-03-2018 Y880_RS12180 e9d0d91273d68c9327599a895f0efcea 448 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 447 5.2E-223 T 29-03-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y880_RS12180 e9d0d91273d68c9327599a895f0efcea 448 Pfam PF01474 Class-II DAHP synthetase family 5 440 7.2E-208 T 29-03-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y880_RS12180 e9d0d91273d68c9327599a895f0efcea 448 Gene3D G3DSA:3.20.20.70 230 395 2.6E-6 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 145 158 2.2E-5 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 67 85 2.2E-5 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 255 271 2.2E-5 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 131 144 2.2E-5 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 288 310 2.2E-5 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 SUPERFAMILY SSF53474 40 311 9.59E-64 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 Pfam PF00561 alpha/beta hydrolase fold 61 297 9.9E-21 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 131 144 8.4E-15 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 257 271 8.4E-15 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 145 158 8.4E-15 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 86 101 8.4E-15 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS00890 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 Gene3D G3DSA:3.40.50.1820 37 312 6.4E-51 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS04375 327b7cf53491387287d7ed280d7ac94c 180 ProSitePatterns PS00194 Thioredoxin family active site. 66 84 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y880_RS04375 327b7cf53491387287d7ed280d7ac94c 180 Gene3D G3DSA:3.40.30.10 28 173 1.4E-28 T 29-03-2018 Y880_RS04375 327b7cf53491387287d7ed280d7ac94c 180 Pfam PF08534 Redoxin 37 160 1.6E-20 T 29-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Y880_RS04375 327b7cf53491387287d7ed280d7ac94c 180 SUPERFAMILY SSF52833 41 173 5.27E-38 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS04375 327b7cf53491387287d7ed280d7ac94c 180 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 171 6.1E-57 T 29-03-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 Y880_RS05010 39351695d39c61148c6c807ea33a5a32 148 Pfam PF03061 Thioesterase superfamily 62 134 5.9E-13 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS05010 39351695d39c61148c6c807ea33a5a32 148 SUPERFAMILY SSF54637 12 145 3.46E-23 T 29-03-2018 IPR029069 HotDog domain Y880_RS05010 39351695d39c61148c6c807ea33a5a32 148 Gene3D G3DSA:3.10.129.10 22 148 1.4E-21 T 29-03-2018 Y880_RS22765 6ed9ce7d8a5e23d6222d68dca768bdb6 294 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 285 1.5E-92 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Y880_RS22765 6ed9ce7d8a5e23d6222d68dca768bdb6 294 Gene3D G3DSA:3.40.50.150 100 294 6.1E-38 T 29-03-2018 Y880_RS22765 6ed9ce7d8a5e23d6222d68dca768bdb6 294 PIRSF PIRSF000401 1 293 1.3E-90 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Y880_RS22765 6ed9ce7d8a5e23d6222d68dca768bdb6 294 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 291 5.3E-101 T 29-03-2018 Y880_RS22765 6ed9ce7d8a5e23d6222d68dca768bdb6 294 SUPERFAMILY SSF53335 63 280 6.03E-46 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22765 6ed9ce7d8a5e23d6222d68dca768bdb6 294 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 291 34.215 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 311 2.8E-35 T 29-03-2018 IPR020801 Polyketide synthase, acyl transferase domain Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 Gene3D G3DSA:3.40.366.10 177 312 8.9E-27 T 29-03-2018 Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 Gene3D G3DSA:3.40.366.10 1 176 3.4E-51 T 29-03-2018 Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 5 290 1.8E-111 T 29-03-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 SUPERFAMILY SSF52151 199 299 6.28E-73 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 SUPERFAMILY SSF52151 5 129 6.28E-73 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 Pfam PF00698 Acyl transferase domain 7 276 2.3E-41 T 29-03-2018 IPR014043 Acyl transferase Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 SUPERFAMILY SSF55048 129 198 3.01E-17 T 29-03-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 Y880_RS12830 00b96f30f3d09013f48c28a65511a477 312 PIRSF PIRSF000446 2 311 6.6E-114 T 29-03-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 PIRSF PIRSF016578 2 194 3.3E-7 T 29-03-2018 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 PIRSF PIRSF016578 235 383 1.5E-6 T 29-03-2018 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 115 4.4E-25 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 Gene3D G3DSA:2.40.110.10 120 222 9.7E-29 T 29-03-2018 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 338 357 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 Gene3D G3DSA:1.20.140.10 223 386 9.4E-48 T 29-03-2018 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 364 8.3E-34 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 SUPERFAMILY SSF47203 229 384 1.43E-43 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 218 2.5E-21 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 Gene3D G3DSA:1.10.540.10 3 116 7.0E-28 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS01165 b4289aae0b5893b21dbcc11af9fc9f91 386 SUPERFAMILY SSF56645 5 230 1.02E-60 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 283 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 SUPERFAMILY SSF46689 191 238 2.69E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 SMART SM00342 204 287 6.5E-31 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 SUPERFAMILY SSF46689 240 289 6.72E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 Pfam PF12833 Helix-turn-helix domain 210 288 4.1E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 287 1.8E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 271 1.8E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 Gene3D G3DSA:1.10.10.60 102 241 1.0E-12 T 29-03-2018 Y880_RS17715 c616dda16508bb2a979b3f4d7bc84304 293 Gene3D G3DSA:1.10.10.60 242 293 2.9E-18 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 SUPERFAMILY SSF111369 117 174 1.96E-6 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:1.20.5.730 165 207 6.2E-4 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 Pfam PF13437 HlyD family secretion protein 216 319 2.2E-13 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 SUPERFAMILY SSF111369 186 284 2.35E-6 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:2.40.50.100 38 126 1.7E-7 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:2.40.50.100 208 250 2.9E-4 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:1.10.287.470 127 164 1.1E-11 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 Pfam PF13533 Biotin-lipoyl like 50 96 2.2E-13 T 29-03-2018 Y880_RS24765 42ee25905ab4a7d6ed26d28226e1e96e 357 SUPERFAMILY SSF111369 43 123 3.4E-9 T 29-03-2018 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 111 137 9.5E-50 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 16 43 9.5E-50 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 93 111 9.5E-50 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 162 190 9.5E-50 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 247 18.347 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 17 234 5.6E-76 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 Pfam PF00902 Sec-independent protein translocase protein (TatC) 20 229 2.0E-65 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y880_RS23910 72a94770b6316ea74dc14862f11757b1 267 ProSitePatterns PS01218 TatC family signature. 162 181 - T 29-03-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 Gene3D G3DSA:3.40.50.980 41 219 4.9E-31 T 29-03-2018 Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 Pfam PF13193 AMP-binding enzyme C-terminal domain 484 560 2.0E-10 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 Gene3D G3DSA:2.30.38.10 379 458 0.0014 T 29-03-2018 Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 SUPERFAMILY SSF56801 18 572 2.62E-96 T 29-03-2018 Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 ProSitePatterns PS00455 Putative AMP-binding domain signature. 215 226 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 Pfam PF00501 AMP-binding enzyme 48 475 1.1E-57 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 Gene3D G3DSA:3.40.50.980 220 377 1.4E-32 T 29-03-2018 Y880_RS12435 583c28d7c6ccd5eb5dd976f27f05c5a0 608 Gene3D G3DSA:3.30.300.30 470 579 5.0E-16 T 29-03-2018 Y880_RS24065 0fa25675d52c201c779463eb1fd77496 265 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 55 245 3.3E-15 T 29-03-2018 Y880_RS24065 0fa25675d52c201c779463eb1fd77496 265 SUPERFAMILY SSF53850 56 221 1.36E-8 T 29-03-2018 Y880_RS24065 0fa25675d52c201c779463eb1fd77496 265 Gene3D G3DSA:3.40.190.10 91 197 1.1E-9 T 29-03-2018 Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 29-03-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 PRINTS PR00355 Adrenodoxin signature 42 52 7.6E-10 T 29-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 PRINTS PR00355 Adrenodoxin signature 60 74 7.6E-10 T 29-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 PRINTS PR00355 Adrenodoxin signature 83 91 7.6E-10 T 29-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 SUPERFAMILY SSF54292 4 106 1.39E-34 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 1.2E-58 T 29-03-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 Gene3D G3DSA:3.10.20.30 5 111 1.5E-33 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS17250 0d83393a0151cdca5df4206f9281d85d 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 91 5.4E-17 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 SUPERFAMILY SSF53901 7 282 1.43E-54 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 Pfam PF02803 Thiolase, C-terminal domain 302 425 1.3E-29 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 SUPERFAMILY SSF53901 302 425 5.51E-28 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 424 1.9E-112 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 Gene3D G3DSA:3.40.47.10 279 423 6.4E-25 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 PIRSF PIRSF000429 1 425 3.3E-99 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 Pfam PF00108 Thiolase, N-terminal domain 7 275 3.4E-46 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS22430 ed8e79ddfd288d5afa86e29155910ed7 425 Gene3D G3DSA:3.40.47.10 4 278 8.6E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS20300 1ac336db0843cfb217dbed25e4747290 211 Pfam PF13410 Glutathione S-transferase, C-terminal domain 131 203 2.1E-6 T 29-03-2018 Y880_RS20300 1ac336db0843cfb217dbed25e4747290 211 Gene3D G3DSA:1.20.1050.10 97 206 6.7E-18 T 29-03-2018 Y880_RS20300 1ac336db0843cfb217dbed25e4747290 211 Gene3D G3DSA:3.40.30.10 4 96 2.5E-19 T 29-03-2018 Y880_RS20300 1ac336db0843cfb217dbed25e4747290 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 81 2.0E-12 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS20300 1ac336db0843cfb217dbed25e4747290 211 SUPERFAMILY SSF47616 84 201 2.52E-13 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS20300 1ac336db0843cfb217dbed25e4747290 211 SUPERFAMILY SSF52833 5 87 1.14E-17 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 Pfam PF01225 Mur ligase family, catalytic domain 2 100 6.1E-19 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 60.768 T 29-03-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 Gene3D G3DSA:3.40.50.720 1 90 1.7E-12 T 29-03-2018 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 Gene3D G3DSA:3.90.190.20 314 451 1.1E-23 T 29-03-2018 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 Gene3D G3DSA:3.40.1190.10 91 313 1.2E-42 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 360 1.1E-8 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 SUPERFAMILY SSF53244 311 448 5.49E-34 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 SUPERFAMILY SSF51984 1 90 1.57E-23 T 29-03-2018 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 1.7E-215 T 29-03-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 Pfam PF08245 Mur ligase middle domain 108 291 8.4E-22 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS18345 032c22f09a626daf4831fe3da023f7fb 451 SUPERFAMILY SSF53623 94 308 1.57E-52 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 Gene3D G3DSA:2.40.170.20 273 815 8.0E-95 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 SUPERFAMILY SSF56935 152 815 7.75E-124 T 29-03-2018 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 SMART SM00965 68 118 1.4E-9 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 Pfam PF00593 TonB dependent receptor 375 813 1.1E-44 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 Pfam PF07660 Secretin and TonB N terminus short domain 69 116 1.0E-7 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 164 815 4.3E-105 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 798 815 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 Pfam PF07715 TonB-dependent Receptor Plug Domain 162 264 6.3E-17 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS09345 0c8975ede9c452e1cb86fcadf8f2d875 815 Gene3D G3DSA:2.170.130.10 138 272 3.3E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS18415 bd27c34d276988fc4748b98e423aba7c 333 PIRSF PIRSF029644 1 333 5.5E-107 T 29-03-2018 IPR016930 Uncharacterised conserved protein UCP029644, LysM, PA4035 Y880_RS18415 bd27c34d276988fc4748b98e423aba7c 333 Pfam PF04773 FecR protein 90 184 1.7E-15 T 29-03-2018 IPR006860 FecR protein Y880_RS23445 508a2ee31803527bf9fcf08cc54072df 258 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 238 1.4E-15 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23445 508a2ee31803527bf9fcf08cc54072df 258 SUPERFAMILY SSF53850 23 241 1.57E-35 T 29-03-2018 Y880_RS23445 508a2ee31803527bf9fcf08cc54072df 258 SMART SM00062 22 243 5.6E-12 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23445 508a2ee31803527bf9fcf08cc54072df 258 Gene3D G3DSA:3.40.190.10 141 256 2.7E-5 T 29-03-2018 Y880_RS23445 508a2ee31803527bf9fcf08cc54072df 258 Gene3D G3DSA:3.40.190.10 17 140 6.6E-16 T 29-03-2018 Y880_RS28115 d192a601871560b9c600f63d0efd335d 452 Pfam PF00120 Glutamine synthetase, catalytic domain 115 446 3.7E-111 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS28115 d192a601871560b9c600f63d0efd335d 452 SMART SM01230 114 370 2.5E-112 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS28115 d192a601871560b9c600f63d0efd335d 452 Gene3D G3DSA:3.30.590.10 114 451 4.0E-92 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y880_RS28115 d192a601871560b9c600f63d0efd335d 452 SUPERFAMILY SSF55931 114 449 2.35E-106 T 29-03-2018 Y880_RS28115 d192a601871560b9c600f63d0efd335d 452 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 250 265 - T 29-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y880_RS28115 d192a601871560b9c600f63d0efd335d 452 Gene3D G3DSA:3.10.20.70 1 113 5.6E-19 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS28115 d192a601871560b9c600f63d0efd335d 452 SUPERFAMILY SSF54368 6 113 2.62E-17 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS11980 371ce998ff0a9b3e8b50c101217e7a10 611 Gene3D G3DSA:1.50.10.10 539 609 0.11 T 29-03-2018 Y880_RS11980 371ce998ff0a9b3e8b50c101217e7a10 611 Gene3D G3DSA:1.50.10.10 189 538 6.5E-87 T 29-03-2018 Y880_RS11980 371ce998ff0a9b3e8b50c101217e7a10 611 Pfam PF00723 Glycosyl hydrolases family 15 221 529 5.3E-48 T 29-03-2018 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: R-HSA-70221 Y880_RS11980 371ce998ff0a9b3e8b50c101217e7a10 611 SUPERFAMILY SSF48208 190 587 7.23E-101 T 29-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 Y880_RS11050 dbd8dc7a5bc0c9090d036f5e7ff436d9 130 Gene3D G3DSA:3.90.1590.10 1 130 4.4E-33 T 29-03-2018 Y880_RS11050 dbd8dc7a5bc0c9090d036f5e7ff436d9 130 SUPERFAMILY SSF51316 3 123 2.93E-36 T 29-03-2018 IPR011057 Mss4-like Y880_RS11050 dbd8dc7a5bc0c9090d036f5e7ff436d9 130 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 102 1.7E-17 T 29-03-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y880_RS26790 5eb60c4c3501553149518d965b79a26a 562 PIRSF PIRSF029745 2 562 9.5E-152 T 29-03-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 Y880_RS26790 5eb60c4c3501553149518d965b79a26a 562 Pfam PF17287 POTRA domain 158 200 1.1E-14 T 29-03-2018 IPR035251 ShlB, POTRA domain Y880_RS26790 5eb60c4c3501553149518d965b79a26a 562 Pfam PF08479 POTRA domain, ShlB-type 71 146 5.1E-27 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y880_RS26790 5eb60c4c3501553149518d965b79a26a 562 Gene3D G3DSA:3.10.20.310 74 146 2.1E-18 T 29-03-2018 Y880_RS26790 5eb60c4c3501553149518d965b79a26a 562 Gene3D G3DSA:2.40.160.50 173 562 9.3E-48 T 29-03-2018 Y880_RS26790 5eb60c4c3501553149518d965b79a26a 562 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 205 525 2.0E-97 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y880_RS01325 c3216444e4e7f5dc5ea9b9d34a9a100b 124 Pfam PF16931 Putative phage holin 1 120 3.2E-35 T 29-03-2018 IPR032637 Putative phage holin-like Y880_RS18305 4ded22c348d9b3b047c87fb00ab5e786 197 Gene3D G3DSA:2.30.130.40 1 111 1.5E-27 T 29-03-2018 Y880_RS18305 4ded22c348d9b3b047c87fb00ab5e786 197 Gene3D G3DSA:1.10.4060.10 120 196 2.1E-4 T 29-03-2018 Y880_RS18305 4ded22c348d9b3b047c87fb00ab5e786 197 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 2 188 8.6E-20 T 29-03-2018 IPR003111 Lon, substrate-binding domain Y880_RS18305 4ded22c348d9b3b047c87fb00ab5e786 197 SUPERFAMILY SSF88697 1 188 6.46E-45 T 29-03-2018 IPR015947 PUA-like domain Y880_RS18305 4ded22c348d9b3b047c87fb00ab5e786 197 SMART SM00464 2 192 4.1E-9 T 29-03-2018 IPR003111 Lon, substrate-binding domain Y880_RS29045 00b387c54a009637dba8d6f16722a8d4 323 Pfam PF16220 Domain of unknown function (DUF4880) 16 55 2.7E-14 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS29045 00b387c54a009637dba8d6f16722a8d4 323 PIRSF PIRSF018266 5 323 4.4E-85 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS29045 00b387c54a009637dba8d6f16722a8d4 323 Pfam PF04773 FecR protein 122 209 2.7E-17 T 29-03-2018 IPR006860 FecR protein Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 258 45.218 T 29-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Gene3D G3DSA:1.20.1180.10 205 258 1.7E-23 T 29-03-2018 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 256 1.9E-95 T 29-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 32 65 6.3E-6 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 137 1.5E-8 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Gene3D G3DSA:2.160.10.10 90 204 4.8E-25 T 29-03-2018 Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 SUPERFAMILY SSF51161 3 258 3.83E-77 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 256 4.2E-27 T 29-03-2018 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Gene3D G3DSA:2.160.10.10 2 89 3.8E-20 T 29-03-2018 Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 PIRSF PIRSF000456 1 258 8.2E-100 T 29-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 Y880_RS16375 2fb60058c7ebe8acf0b077ae3a64e0a1 258 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 4 32 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y880_RS12175 5d39a9fc2802005823d039bb2c676785 239 SUPERFAMILY SSF53335 5 195 1.23E-40 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS12175 5d39a9fc2802005823d039bb2c676785 239 Pfam PF01564 Spermine/spermidine synthase domain 58 172 1.0E-5 T 29-03-2018 Y880_RS12175 5d39a9fc2802005823d039bb2c676785 239 Gene3D G3DSA:3.40.50.150 6 238 1.2E-24 T 29-03-2018 Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 SUPERFAMILY SSF51556 3 343 6.43E-147 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 PIRSF PIRSF001237 1 345 1.8E-140 T 29-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 Gene3D G3DSA:3.20.20.140 11 345 2.2E-54 T 29-03-2018 Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 246 257 - T 29-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 ProSitePatterns PS00482 Dihydroorotase signature 1. 12 20 - T 29-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 5 343 3.0E-141 T 29-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 Hamap MF_00219 Dihydroorotase [pyrC]. 3 344 45.008 T 29-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS15750 c3027279a8f185b8f9983de93e1c8e1c 348 Pfam PF01979 Amidohydrolase family 12 310 4.5E-14 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 SUPERFAMILY SSF55021 272 366 2.98E-13 T 29-03-2018 Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 Pfam PF09383 NIL domain 291 361 1.0E-11 T 29-03-2018 IPR018449 NIL domain Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 SMART SM00382 54 241 3.3E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 SUPERFAMILY SSF52540 29 263 8.57E-82 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 Pfam PF00005 ABC transporter 45 193 2.2E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 Gene3D G3DSA:3.30.70.260 278 367 4.5E-21 T 29-03-2018 Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 Gene3D G3DSA:3.40.50.300 25 277 2.0E-78 T 29-03-2018 Y880_RS09095 b772d004c82ac91c3a3bbc680c56fedb 369 SMART SM00930 288 363 8.4E-13 T 29-03-2018 IPR018449 NIL domain Y880_RS10800 3cbb6090e580b936418dff0f285b9f76 136 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 35 3.8E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS10800 3cbb6090e580b936418dff0f285b9f76 136 Pfam PF07963 Prokaryotic N-terminal methylation motif 12 35 1.0E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS10800 3cbb6090e580b936418dff0f285b9f76 136 Gene3D G3DSA:3.30.700.10 15 109 1.6E-10 T 29-03-2018 Y880_RS10800 3cbb6090e580b936418dff0f285b9f76 136 SUPERFAMILY SSF54523 15 97 4.16E-12 T 29-03-2018 Y880_RS29675 8269e26016100d18b7be95f80dc9edea 328 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 324 3.2E-128 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Y880_RS29675 8269e26016100d18b7be95f80dc9edea 328 SUPERFAMILY SSF53659 3 326 1.02E-112 T 29-03-2018 Y880_RS29675 8269e26016100d18b7be95f80dc9edea 328 Gene3D G3DSA:3.40.718.10 2 327 6.9E-132 T 29-03-2018 Y880_RS29675 8269e26016100d18b7be95f80dc9edea 328 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 324 36.577 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Y880_RS29675 8269e26016100d18b7be95f80dc9edea 328 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 31 320 1.7E-109 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 90 174 3.0E-37 T 29-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 SUPERFAMILY SSF55200 90 177 8.24E-33 T 29-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 SUPERFAMILY SSF54364 11 84 3.27E-27 T 29-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 Gene3D G3DSA:3.10.20.80 8 84 8.1E-30 T 29-03-2018 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 3 176 29.764 T 29-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 13 176 3.1E-65 T 29-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 Gene3D G3DSA:3.30.110.10 85 177 5.6E-35 T 29-03-2018 Y880_RS11170 1578d73ecd7c84ba980d5f57db411d21 177 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 13 79 7.8E-30 T 29-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y880_RS03565 c1d0406b71b9129b91c465c510e18382 207 SUPERFAMILY SSF53335 16 203 1.45E-35 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS03565 c1d0406b71b9129b91c465c510e18382 207 Pfam PF13489 Methyltransferase domain 32 179 1.2E-14 T 29-03-2018 Y880_RS03565 c1d0406b71b9129b91c465c510e18382 207 Gene3D G3DSA:3.40.50.150 10 206 5.1E-30 T 29-03-2018 Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 Gene3D G3DSA:3.40.720.10 1 372 3.0E-76 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 TIGRFAM TIGR03417 chol_sulfatase: choline-sulfatase 4 501 1.3E-265 T 29-03-2018 IPR017785 Choline-sulfatase Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 Gene3D G3DSA:3.30.1120.10 373 453 7.7E-12 T 29-03-2018 Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 Pfam PF00884 Sulfatase 5 347 3.1E-52 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 SUPERFAMILY SSF53649 254 478 3.49E-114 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 SUPERFAMILY SSF53649 2 211 3.49E-114 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 Pfam PF12411 Choline sulfatase enzyme C terminal 449 500 1.4E-24 T 29-03-2018 IPR025863 Choline sulfatase enzyme C-terminal domain Y880_RS26740 fd0a634b69fa944aad0ae0bfe0057304 503 ProSitePatterns PS00149 Sulfatases signature 2. 94 104 - T 29-03-2018 IPR024607 Sulfatase, conserved site Y880_RS18170 0060a618184084593a1db82307554491 511 Gene3D G3DSA:3.60.110.10 222 504 2.0E-43 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS18170 0060a618184084593a1db82307554491 511 Pfam PF00795 Carbon-nitrogen hydrolase 230 467 7.7E-29 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS18170 0060a618184084593a1db82307554491 511 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 61 452 2.3E-97 T 29-03-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Y880_RS18170 0060a618184084593a1db82307554491 511 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 8 489 22.897 T 29-03-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Y880_RS18170 0060a618184084593a1db82307554491 511 SUPERFAMILY SSF56317 221 484 4.19E-47 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS17930 d11dd14135f0e5345ea357ef4e5c733f 306 Gene3D G3DSA:1.10.540.10 2 98 3.0E-8 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS17930 d11dd14135f0e5345ea357ef4e5c733f 306 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 90 3.1E-4 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS17930 d11dd14135f0e5345ea357ef4e5c733f 306 SUPERFAMILY SSF56645 13 197 3.52E-14 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS02740 93cbbfc2387d81fcbdd27bc22c2e4f05 198 SUPERFAMILY SSF48695 15 198 5.85E-67 T 29-03-2018 IPR011031 Multihaem cytochrome Y880_RS02740 93cbbfc2387d81fcbdd27bc22c2e4f05 198 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 18 192 2.4E-76 T 29-03-2018 IPR005126 NapC/NirT cytochrome c, N-terminal Y880_RS02740 93cbbfc2387d81fcbdd27bc22c2e4f05 198 Gene3D G3DSA:1.10.468.10 67 196 2.2E-28 T 29-03-2018 Y880_RS02740 93cbbfc2387d81fcbdd27bc22c2e4f05 198 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 8 193 8.8E-104 T 29-03-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 Y880_RS02740 93cbbfc2387d81fcbdd27bc22c2e4f05 198 PIRSF PIRSF000013 1 198 9.0E-109 T 29-03-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 Y880_RS13000 3f0ebe14ea50fc86ca6449c3a853567c 469 PIRSF PIRSF006060 1 468 3.9E-79 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS13000 3f0ebe14ea50fc86ca6449c3a853567c 469 Pfam PF00324 Amino acid permease 19 457 1.4E-115 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS13000 3f0ebe14ea50fc86ca6449c3a853567c 469 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS08095 6369f3d74099dcc5b75edc360bd907f7 116 Pfam PF11127 Protein of unknown function (DUF2892) 15 70 8.9E-8 T 29-03-2018 IPR021309 Protein of unknown function DUF2892 Y880_RS14050 893827f6c2c84d45d6e265cac57d306b 146 Pfam PF07813 LTXXQ motif family protein 43 123 1.0E-6 T 29-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 Y880_RS14050 893827f6c2c84d45d6e265cac57d306b 146 PIRSF PIRSF034445 80 133 3.7E-8 T 29-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 Y880_RS14050 893827f6c2c84d45d6e265cac57d306b 146 PIRSF PIRSF034445 1 94 9.8E-6 T 29-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 Y880_RS20840 225421c10d3addfa24c1bd22ed354cef 323 Gene3D G3DSA:3.40.50.300 1 321 6.5E-83 T 29-03-2018 Y880_RS20840 225421c10d3addfa24c1bd22ed354cef 323 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 298 4.4E-19 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y880_RS20840 225421c10d3addfa24c1bd22ed354cef 323 Pfam PF00005 ABC transporter 30 182 1.6E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS20840 225421c10d3addfa24c1bd22ed354cef 323 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS20840 225421c10d3addfa24c1bd22ed354cef 323 SUPERFAMILY SSF52540 5 253 4.71E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20840 225421c10d3addfa24c1bd22ed354cef 323 SMART SM00382 39 231 7.8E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS20840 225421c10d3addfa24c1bd22ed354cef 323 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 316 7.4E-27 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y880_RS22495 ee4bd4c599da62b5adf1cd3f44cb5c43 192 Pfam PF13671 AAA domain 14 57 2.9E-6 T 29-03-2018 Y880_RS22495 ee4bd4c599da62b5adf1cd3f44cb5c43 192 SUPERFAMILY SSF52540 11 114 7.78E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22495 ee4bd4c599da62b5adf1cd3f44cb5c43 192 Gene3D G3DSA:3.40.50.300 4 26 8.7E-5 T 29-03-2018 Y880_RS22495 ee4bd4c599da62b5adf1cd3f44cb5c43 192 Gene3D G3DSA:3.40.50.300 27 192 1.9E-13 T 29-03-2018 Y880_RS04025 89083be731b9b2ae06e984ee82b23439 303 SUPERFAMILY SSF103481 46 144 9.68E-12 T 29-03-2018 Y880_RS04025 89083be731b9b2ae06e984ee82b23439 303 Pfam PF00892 EamA-like transporter family 12 140 2.1E-15 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS04025 89083be731b9b2ae06e984ee82b23439 303 Pfam PF00892 EamA-like transporter family 156 292 4.0E-21 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS04025 89083be731b9b2ae06e984ee82b23439 303 SUPERFAMILY SSF103481 193 295 3.66E-15 T 29-03-2018 Y880_RS14095 23930ceb8674e973e75a5c5aaf1651e3 214 SUPERFAMILY SSF159594 36 205 4.97E-44 T 29-03-2018 Y880_RS14095 23930ceb8674e973e75a5c5aaf1651e3 214 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 38 198 6.7E-26 T 29-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Y880_RS14095 23930ceb8674e973e75a5c5aaf1651e3 214 Gene3D G3DSA:3.40.50.10610 22 214 2.9E-42 T 29-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Y880_RS20685 53635d40e6a2a201bab59782b539f413 1276 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 10 1275 4.8E-293 T 29-03-2018 IPR011836 Conserved hypothetical protein CHP02099 Y880_RS20685 53635d40e6a2a201bab59782b539f413 1276 Pfam PF13502 AsmA-like C-terminal region 1020 1265 2.6E-51 T 29-03-2018 IPR032712 AsmA-like, C-terminal Y880_RS20685 53635d40e6a2a201bab59782b539f413 1276 Pfam PF13116 Protein of unknown function 513 799 1.6E-49 T 29-03-2018 IPR025263 Domain of unknown function DUF3971 Y880_RS22055 3e0b24f060a65733fe541703ad463e1f 284 Pfam PF02567 Phenazine biosynthesis-like protein 8 271 6.5E-32 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS22055 3e0b24f060a65733fe541703ad463e1f 284 Gene3D G3DSA:3.10.310.10 125 269 2.6E-32 T 29-03-2018 Y880_RS22055 3e0b24f060a65733fe541703ad463e1f 284 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 276 3.9E-37 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS22055 3e0b24f060a65733fe541703ad463e1f 284 SUPERFAMILY SSF54506 1 280 1.92E-50 T 29-03-2018 Y880_RS22055 3e0b24f060a65733fe541703ad463e1f 284 PIRSF PIRSF016184 1 282 1.3E-82 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y880_RS22055 3e0b24f060a65733fe541703ad463e1f 284 Gene3D G3DSA:3.10.310.10 1 124 3.0E-19 T 29-03-2018 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 53.49 T 29-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 SUPERFAMILY SSF53659 2 359 2.88E-126 T 29-03-2018 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 SMART SM01329 4 353 1.8E-212 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 1.3E-163 T 29-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 29-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 Gene3D G3DSA:3.40.718.10 213 358 3.2E-64 T 29-03-2018 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 Gene3D G3DSA:3.40.718.10 1 212 8.1E-63 T 29-03-2018 Y880_RS13615 d405ba3087c78f64e14ea213f120c3da 360 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 353 9.8E-140 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 Pfam PF01197 Ribosomal protein L31 1 65 1.0E-30 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 SUPERFAMILY SSF143800 1 67 5.49E-28 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 31.851 T 29-03-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.0E-21 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.0E-21 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.0E-21 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 1.5E-33 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS23800 2728aa6aa959f51dfa169f7dfbbf72b1 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 SMART SM00155 83 110 0.39 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 SMART SM00155 265 291 1.4 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 Gene3D G3DSA:3.30.870.10 180 333 2.1E-27 T 29-03-2018 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 Gene3D G3DSA:3.30.870.10 1 179 7.1E-26 T 29-03-2018 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 SUPERFAMILY SSF56024 181 338 3.14E-38 T 29-03-2018 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 Pfam PF13091 PLD-like domain 191 313 1.6E-25 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 Pfam PF13091 PLD-like domain 4 143 3.0E-11 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS19980 adbde0b21a71b4b7dcfa1d63c431bf69 359 SUPERFAMILY SSF56024 2 152 1.23E-34 T 29-03-2018 Y880_RS16910 b0421c789979c3605c355900147762bb 437 Pfam PF00083 Sugar (and other) transporter 23 232 1.6E-24 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS16910 b0421c789979c3605c355900147762bb 437 Pfam PF00083 Sugar (and other) transporter 234 429 3.7E-13 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS16910 b0421c789979c3605c355900147762bb 437 SUPERFAMILY SSF103473 18 432 9.16E-65 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS16910 b0421c789979c3605c355900147762bb 437 Gene3D G3DSA:1.20.1250.20 16 229 4.9E-21 T 29-03-2018 Y880_RS16910 b0421c789979c3605c355900147762bb 437 ProSitePatterns PS00216 Sugar transport proteins signature 1. 302 319 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS16910 b0421c789979c3605c355900147762bb 437 Gene3D G3DSA:1.20.1250.20 230 436 1.8E-25 T 29-03-2018 Y880_RS16910 b0421c789979c3605c355900147762bb 437 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 28 419 6.8E-136 T 29-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 Y880_RS10930 3f19028b397e97ae9955b8ad6654d07f 435 Pfam PF03573 outer membrane porin, OprD family 36 432 1.4E-138 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS10930 3f19028b397e97ae9955b8ad6654d07f 435 Gene3D G3DSA:2.40.160.10 6 432 8.0E-103 T 29-03-2018 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 SUPERFAMILY SSF55347 135 300 1.5E-52 T 29-03-2018 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 SUPERFAMILY SSF51735 2 156 6.26E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 Gene3D G3DSA:3.40.50.720 1 155 5.0E-31 T 29-03-2018 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 181 203 - T 29-03-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 127 3.0E-25 T 29-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 Gene3D G3DSA:3.30.70.260 348 429 2.9E-21 T 29-03-2018 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 Gene3D G3DSA:3.30.360.10 156 296 1.1E-53 T 29-03-2018 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 Pfam PF01842 ACT domain 352 419 3.8E-16 T 29-03-2018 IPR002912 ACT domain Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 PIRSF PIRSF000098 1 433 2.8E-167 T 29-03-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 SUPERFAMILY SSF55021 350 420 2.41E-15 T 29-03-2018 Y880_RS16840 7bcd5def170badf68f83c5ec0ec03df7 434 Pfam PF00742 Homoserine dehydrogenase 135 313 9.5E-64 T 29-03-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Y880_RS09805 90ea7d7354fba15cc581da3293765bad 414 SUPERFAMILY SSF111369 53 294 9.94E-71 T 29-03-2018 Y880_RS09805 90ea7d7354fba15cc581da3293765bad 414 Gene3D G3DSA:2.40.50.100 63 135 1.6E-17 T 29-03-2018 Y880_RS09805 90ea7d7354fba15cc581da3293765bad 414 Gene3D G3DSA:2.40.50.100 163 389 2.1E-7 T 29-03-2018 Y880_RS09805 90ea7d7354fba15cc581da3293765bad 414 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 371 1.6E-80 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS09805 90ea7d7354fba15cc581da3293765bad 414 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 290 6.3E-16 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS16040 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 SUPERFAMILY SSF55826 2 153 7.19E-41 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS16040 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 Pfam PF04073 Aminoacyl-tRNA editing domain 32 142 4.9E-26 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS16040 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 153 1.7E-54 T 29-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Y880_RS16040 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 PIRSF PIRSF006181 1 156 1.1E-53 T 29-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Y880_RS16040 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 Gene3D G3DSA:3.90.960.10 1 156 1.8E-37 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Pfam PF08447 PAS fold 317 386 5.0E-17 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Pfam PF13426 PAS domain 412 513 2.9E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Gene3D G3DSA:3.30.450.20 332 404 2.9E-15 T 29-03-2018 Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 527 685 3.2E-33 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SUPERFAMILY SSF55785 320 395 2.09E-14 T 29-03-2018 IPR000014 PAS domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SMART SM00267 515 687 1.5E-52 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SMART SM00086 350 393 1.0E-6 T 29-03-2018 IPR001610 PAC motif Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SMART SM00086 473 515 0.0021 T 29-03-2018 IPR001610 PAC motif Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SMART SM00052 697 942 3.2E-119 T 29-03-2018 IPR001633 EAL domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SUPERFAMILY SSF55073 531 689 4.55E-43 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Pfam PF00563 EAL domain 704 937 3.8E-73 T 29-03-2018 IPR001633 EAL domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SUPERFAMILY SSF141868 702 949 2.09E-91 T 29-03-2018 IPR001633 EAL domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 398 522 6.5E-20 T 29-03-2018 IPR000014 PAS domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 324 399 5.4E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Gene3D G3DSA:3.20.20.450 695 946 8.8E-103 T 29-03-2018 IPR001633 EAL domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Gene3D G3DSA:3.30.450.20 274 331 1.2E-8 T 29-03-2018 Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Gene3D G3DSA:3.30.450.20 405 527 8.0E-27 T 29-03-2018 Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SUPERFAMILY SSF55785 392 512 4.54E-24 T 29-03-2018 IPR000014 PAS domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Pfam PF00990 Diguanylate cyclase, GGDEF domain 527 682 1.4E-41 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Gene3D G3DSA:3.30.450.20 231 273 0.32 T 29-03-2018 Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SMART SM00091 277 343 23.0 T 29-03-2018 IPR000014 PAS domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 SMART SM00091 401 467 2.6E-8 T 29-03-2018 IPR000014 PAS domain Y880_RS25885 8c0967ad9938b9b658dfc9f95a05e7c0 951 Gene3D G3DSA:3.30.70.270 528 694 1.8E-55 T 29-03-2018 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 SUPERFAMILY SSF53901 5 253 1.48E-66 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 PIRSF PIRSF000429 1 379 5.3E-116 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 SUPERFAMILY SSF53901 257 376 8.35E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 ProSitePatterns PS00737 Thiolases signature 2. 324 340 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 Pfam PF02803 Thiolase, C-terminal domain 256 376 5.8E-45 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 Gene3D G3DSA:3.40.47.10 145 238 3.3E-13 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 Gene3D G3DSA:3.40.47.10 239 375 3.1E-34 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 88 106 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 Gene3D G3DSA:3.40.47.10 1 136 9.3E-25 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 Pfam PF00108 Thiolase, N-terminal domain 6 248 3.1E-59 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS12685 4ddc80b6fb753388ffd0b2f7b36df036 379 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 376 4.0E-123 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS28550 ebbf9239c6157df9529a9cfa710c427c 125 Pfam PF04241 Protein of unknown function (DUF423) 19 105 1.1E-29 T 29-03-2018 IPR006696 Protein of unknown function DUF423 Y880_RS12080 3d58b4fbe22aaf9bbd7df9aa9500278b 296 Gene3D G3DSA:3.40.50.300 52 199 3.5E-13 T 29-03-2018 Y880_RS12080 3d58b4fbe22aaf9bbd7df9aa9500278b 296 SUPERFAMILY SSF52540 54 189 1.97E-23 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12080 3d58b4fbe22aaf9bbd7df9aa9500278b 296 Pfam PF05673 Protein of unknown function (DUF815) 34 289 3.4E-104 T 29-03-2018 IPR008533 Domain of unknown function DUF815 Y880_RS24655 26644542cd492829ea723e99205eafa7 150 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 148 3.0E-28 T 29-03-2018 IPR002810 NfeD-like, C-terminal domain Y880_RS24655 26644542cd492829ea723e99205eafa7 150 Gene3D G3DSA:2.40.50.140 92 148 1.3E-8 T 29-03-2018 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 Pfam PF00069 Protein kinase domain 259 454 5.4E-26 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 SMART SM00220 255 506 2.2E-13 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 Gene3D G3DSA:3.60.40.10 4 223 1.7E-31 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 SMART SM00331 16 222 1.0E-11 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 Pfam PF13672 Protein phosphatase 2C 11 180 4.6E-8 T 29-03-2018 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 SMART SM00332 1 220 8.9E-5 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 Gene3D G3DSA:3.30.200.20 247 335 2.8E-4 T 29-03-2018 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 SUPERFAMILY SSF56112 240 518 8.09E-51 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 Gene3D G3DSA:1.10.510.10 336 530 9.7E-38 T 29-03-2018 Y880_RS06000 24009f08b3ca06ccc0d32e4467435b5a 549 SUPERFAMILY SSF81606 3 222 7.46E-45 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS04695 f56de7c99a0520cb6f438067a40a8eb0 179 Pfam PF03691 Uncharacterised protein family (UPF0167) 5 178 2.9E-61 T 29-03-2018 IPR005363 Uncharacterised protein family UPF0167 Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 Gene3D G3DSA:3.40.50.720 1 253 1.4E-72 T 29-03-2018 Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 191 3.0E-4 T 29-03-2018 Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.1E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.1E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.1E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 250 4.6E-62 T 29-03-2018 Y880_RS15670 c572c0f3915204e9206eac2f3be57a11 253 SUPERFAMILY SSF51735 8 252 4.97E-78 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 SMART SM00248 81 110 0.52 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 SMART SM00248 48 77 3.3E-4 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 SMART SM00248 114 143 0.021 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 SUPERFAMILY SSF48403 23 167 3.59E-37 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 Pfam PF12796 Ankyrin repeats (3 copies) 24 109 1.9E-11 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 Gene3D G3DSA:1.25.40.20 2 96 2.1E-26 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 Gene3D G3DSA:1.25.40.20 97 170 1.7E-20 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS14490 20b2cea525bd83a631edb10adb7bcdcf 171 Pfam PF00023 Ankyrin repeat 114 145 6.0E-5 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 6.0E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 SMART SM00345 12 71 5.1E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 SUPERFAMILY SSF64288 59 235 1.11E-41 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 SUPERFAMILY SSF46785 10 81 8.35E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 Gene3D G3DSA:1.10.10.10 1 70 1.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 Pfam PF07702 UTRA domain 92 230 3.3E-37 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 SMART SM00866 92 231 2.2E-30 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 Gene3D G3DSA:3.40.1410.10 71 237 3.0E-34 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 1.1E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS02590 9de7f9d3f2653db875f02c759c0bd47b 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 1.1E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS03335 f1045b6674915ec11696af2f5b4cd1d5 424 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 424 4.6E-135 T 29-03-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y880_RS03335 f1045b6674915ec11696af2f5b4cd1d5 424 SUPERFAMILY SSF56935 24 424 8.55E-92 T 29-03-2018 Y880_RS03335 f1045b6674915ec11696af2f5b4cd1d5 424 Gene3D G3DSA:2.40.160.60 24 424 1.4E-82 T 29-03-2018 Y880_RS17410 ca5bc6bb4b292fb41f8840f1aea80999 336 Gene3D G3DSA:3.40.50.150 49 314 2.5E-54 T 29-03-2018 Y880_RS17410 ca5bc6bb4b292fb41f8840f1aea80999 336 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 16 316 55.287 T 29-03-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 Y880_RS17410 ca5bc6bb4b292fb41f8840f1aea80999 336 Pfam PF05971 Protein of unknown function (DUF890) 14 314 8.9E-155 T 29-03-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 Y880_RS17410 ca5bc6bb4b292fb41f8840f1aea80999 336 SUPERFAMILY SSF53335 54 313 1.49E-30 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS17410 ca5bc6bb4b292fb41f8840f1aea80999 336 PIRSF PIRSF029038 6 326 6.9E-157 T 29-03-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 Y880_RS27040 10bf5f67caa12c5abce72987ad7beed1 281 SUPERFAMILY SSF144059 23 278 9.55E-92 T 29-03-2018 Y880_RS27040 10bf5f67caa12c5abce72987ad7beed1 281 Pfam PF07024 ImpE protein 159 274 1.6E-43 T 29-03-2018 IPR009211 Predicted virulence protein, SciE type Y880_RS27040 10bf5f67caa12c5abce72987ad7beed1 281 PIRSF PIRSF029288 4 281 2.9E-103 T 29-03-2018 IPR009211 Predicted virulence protein, SciE type Y880_RS27040 10bf5f67caa12c5abce72987ad7beed1 281 Gene3D G3DSA:1.25.40.10 18 154 1.1E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS27040 10bf5f67caa12c5abce72987ad7beed1 281 Pfam PF13428 Tetratricopeptide repeat 20 59 5.0E-5 T 29-03-2018 Y880_RS13365 3155eb73d90a87f4c943b5e14cf46aa8 340 SMART SM00327 89 289 1.1E-23 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS13365 3155eb73d90a87f4c943b5e14cf46aa8 340 SUPERFAMILY SSF53300 86 266 1.22E-38 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS13365 3155eb73d90a87f4c943b5e14cf46aa8 340 Gene3D G3DSA:3.40.50.410 86 305 2.4E-43 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS13365 3155eb73d90a87f4c943b5e14cf46aa8 340 Pfam PF00092 von Willebrand factor type A domain 91 282 4.9E-32 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS08200 5a0b84d5ba2bae1693ba14e9059bb83f 114 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 78 4.5E-20 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS08200 5a0b84d5ba2bae1693ba14e9059bb83f 114 Gene3D G3DSA:3.30.70.100 1 101 9.9E-24 T 29-03-2018 Y880_RS08200 5a0b84d5ba2bae1693ba14e9059bb83f 114 SUPERFAMILY SSF54909 1 95 3.94E-29 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS24265 6bf374275123eaebdae6ac616fd95792 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 49 248 1.2E-20 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS24265 6bf374275123eaebdae6ac616fd95792 248 SUPERFAMILY SSF53850 25 248 3.49E-37 T 29-03-2018 Y880_RS24265 6bf374275123eaebdae6ac616fd95792 248 Gene3D G3DSA:3.40.190.10 19 172 4.4E-17 T 29-03-2018 Y880_RS24265 6bf374275123eaebdae6ac616fd95792 248 Gene3D G3DSA:3.40.190.10 173 248 1.8E-5 T 29-03-2018 Y880_RS14840 65702ca0236538cbcd8e504e8d1e2da9 107 Gene3D G3DSA:1.10.287.1160 74 102 5.1E-14 T 29-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Y880_RS14840 65702ca0236538cbcd8e504e8d1e2da9 107 Pfam PF04316 Anti-sigma-28 factor, FlgM 49 102 1.4E-20 T 29-03-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal Y880_RS14840 65702ca0236538cbcd8e504e8d1e2da9 107 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 5 104 1.4E-26 T 29-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Y880_RS14840 65702ca0236538cbcd8e504e8d1e2da9 107 SUPERFAMILY SSF101498 5 104 1.02E-19 T 29-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 Gene3D G3DSA:1.20.1250.20 5 195 2.4E-23 T 29-03-2018 Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 PRINTS PR01035 Tetracycline resistance protein signature 18 34 7.8E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 PRINTS PR01035 Tetracycline resistance protein signature 133 155 7.8E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 PRINTS PR01035 Tetracycline resistance protein signature 246 266 7.8E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 PRINTS PR01035 Tetracycline resistance protein signature 301 321 7.8E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 SUPERFAMILY SSF103473 1 382 8.24E-40 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 Pfam PF07690 Major Facilitator Superfamily 21 350 1.1E-30 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS02400 d60baa476f3b33b092f9d1e5317b627d 385 Gene3D G3DSA:1.20.1250.20 196 385 7.8E-4 T 29-03-2018 Y880_RS04765 96432ae5ac6425755c608d6b69f709f6 179 Pfam PF05751 FixH 12 155 2.2E-39 T 29-03-2018 IPR008620 Nitrogen fixation protein FixH Y880_RS20575 ec027a4df7f456370ca9619c58b076f9 157 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 147 8.6E-54 T 29-03-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 Y880_RS20575 ec027a4df7f456370ca9619c58b076f9 157 Pfam PF02470 MlaD protein 38 116 2.1E-20 T 29-03-2018 IPR003399 Mce/MlaD Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 Gene3D G3DSA:3.40.50.720 165 375 1.1E-26 T 29-03-2018 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 Gene3D G3DSA:3.50.50.60 1 164 4.6E-16 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 313 3.3E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 180 3.7E-5 T 29-03-2018 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 286 293 3.7E-5 T 29-03-2018 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 3.7E-5 T 29-03-2018 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 6.7E-9 T 29-03-2018 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 6.7E-9 T 29-03-2018 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 6.7E-9 T 29-03-2018 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 SUPERFAMILY SSF51905 2 167 1.3E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10885 0b90c8096efc1ede238f58b63ed9683c 401 SUPERFAMILY SSF51905 208 331 1.3E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS22695 715c222885765118c28fcd0ab113e9ac 708 Gene3D G3DSA:2.40.170.20 176 708 7.6E-89 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS22695 715c222885765118c28fcd0ab113e9ac 708 Pfam PF00593 TonB dependent receptor 236 706 1.2E-72 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS22695 715c222885765118c28fcd0ab113e9ac 708 SUPERFAMILY SSF56935 22 708 3.87E-140 T 29-03-2018 Y880_RS22695 715c222885765118c28fcd0ab113e9ac 708 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 707 1.2E-114 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS22695 715c222885765118c28fcd0ab113e9ac 708 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 163 3.3E-16 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS22695 715c222885765118c28fcd0ab113e9ac 708 Gene3D G3DSA:2.170.130.10 21 175 9.8E-26 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 Pfam PF13522 Glutamine amidotransferase domain 67 182 2.6E-20 T 29-03-2018 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 Pfam PF01380 SIS domain 291 418 3.4E-33 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 Pfam PF01380 SIS domain 464 593 1.5E-25 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 SUPERFAMILY SSF53697 246 611 4.17E-118 T 29-03-2018 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 611 40.718 T 29-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 Gene3D G3DSA:3.40.50.10490 461 609 8.3E-48 T 29-03-2018 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 Gene3D G3DSA:3.60.20.10 2 239 5.7E-67 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 Gene3D G3DSA:3.40.50.10490 240 460 2.3E-65 T 29-03-2018 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 611 2.2E-258 T 29-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Y880_RS26470 c9e37c0e9b4797d663717d012a107abe 611 SUPERFAMILY SSF56235 2 235 2.14E-73 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Gene3D G3DSA:3.90.199.10 287 375 7.8E-8 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 SMART SM00434 11 500 0.0 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Gene3D G3DSA:2.120.10.90 534 902 3.9E-126 T 29-03-2018 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 507 1.6E-153 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Gene3D G3DSA:1.10.268.10 376 498 5.2E-48 T 29-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 885 23.956 T 29-03-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 539 586 1.2E-8 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 837 883 2.1E-12 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 788 833 2.1E-12 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 591 638 1.6E-8 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 737 781 1.5E-13 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 689 732 3.1E-8 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 SUPERFAMILY SSF56719 30 523 1.24E-184 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 Gene3D G3DSA:3.90.199.10 34 286 2.9E-117 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 SUPERFAMILY SSF101904 683 898 1.7E-99 T 29-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 SUPERFAMILY SSF101904 534 639 1.7E-99 T 29-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Y880_RS13850 2bb1088e656ae3a603b0621c26f7f9bc 923 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 638 6.2E-299 T 29-03-2018 Y880_RS17335 8fd63a500704eb221fba8e19d328cf70 526 Gene3D G3DSA:3.20.20.450 256 514 8.0E-81 T 29-03-2018 IPR001633 EAL domain Y880_RS17335 8fd63a500704eb221fba8e19d328cf70 526 Pfam PF12792 CSS motif domain associated with EAL 42 232 2.4E-42 T 29-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Y880_RS17335 8fd63a500704eb221fba8e19d328cf70 526 Pfam PF00563 EAL domain 263 498 1.2E-67 T 29-03-2018 IPR001633 EAL domain Y880_RS17335 8fd63a500704eb221fba8e19d328cf70 526 SMART SM00052 257 503 1.1E-97 T 29-03-2018 IPR001633 EAL domain Y880_RS17335 8fd63a500704eb221fba8e19d328cf70 526 SUPERFAMILY SSF141868 263 507 2.88E-77 T 29-03-2018 IPR001633 EAL domain Y880_RS20585 d3532d0b384f66ccea2e6536da21d9bb 269 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS20585 d3532d0b384f66ccea2e6536da21d9bb 269 Pfam PF00005 ABC transporter 25 172 1.2E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS20585 d3532d0b384f66ccea2e6536da21d9bb 269 Gene3D G3DSA:3.40.50.300 6 268 1.0E-62 T 29-03-2018 Y880_RS20585 d3532d0b384f66ccea2e6536da21d9bb 269 SMART SM00382 33 222 2.1E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS20585 d3532d0b384f66ccea2e6536da21d9bb 269 SUPERFAMILY SSF52540 8 234 1.74E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 12 423 4.6E-138 T 29-03-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 Gene3D G3DSA:3.40.630.10 206 427 3.2E-77 T 29-03-2018 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 Gene3D G3DSA:3.40.630.10 2 96 4.5E-35 T 29-03-2018 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 SUPERFAMILY SSF53187 214 423 2.4E-107 T 29-03-2018 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 SUPERFAMILY SSF53187 4 87 2.4E-107 T 29-03-2018 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 SUPERFAMILY SSF101821 88 213 1.19E-32 T 29-03-2018 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 Hamap MF_00467 Probable M18 family aminopeptidase 2 [apeB]. 1 425 60.431 T 29-03-2018 IPR022984 M18 family aminopeptidase 2, putative GO:0004177 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 301 317 1.5E-41 T 29-03-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 109 129 1.5E-41 T 29-03-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 76 92 1.5E-41 T 29-03-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 144 161 1.5E-41 T 29-03-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 390 405 1.5E-41 T 29-03-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 262 280 1.5E-41 T 29-03-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y880_RS14260 7faf0e1e98ac6ead565fbc1b301d6c21 429 Gene3D G3DSA:2.30.250.10 97 205 2.5E-41 T 29-03-2018 Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 SUPERFAMILY SSF53335 43 161 8.94E-5 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 SUPERFAMILY SSF53335 199 356 1.47E-24 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 Gene3D G3DSA:3.40.50.150 13 189 0.011 T 29-03-2018 Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 Gene3D G3DSA:3.40.50.150 190 374 4.4E-26 T 29-03-2018 Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 PIRSF PIRSF037565 1 374 2.5E-143 T 29-03-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 Pfam PF05175 Methyltransferase small domain 201 371 3.2E-51 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS21435 18b5039e5a911f2be475f2111ae4133c 374 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 45.772 T 29-03-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 200 1.5E-20 T 29-03-2018 IPR023214 HAD-like domain Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 190 203 3.2E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 3.2E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 3.2E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 SUPERFAMILY SSF56784 5 229 1.44E-46 T 29-03-2018 IPR023214 HAD-like domain Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 Gene3D G3DSA:3.40.50.1000 87 232 1.9E-30 T 29-03-2018 IPR023214 HAD-like domain Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 85 200 1.0E-13 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 Gene3D G3DSA:3.40.50.1000 1 43 0.18 T 29-03-2018 IPR023214 HAD-like domain Y880_RS25015 19d1cf32c95050985d7cd9c37c52fe46 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 94 195 8.4E-13 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS05805 2755af2505e318438ee9ca2f5c92e0a1 168 SUPERFAMILY SSF52949 1 155 3.36E-32 T 29-03-2018 Y880_RS05805 2755af2505e318438ee9ca2f5c92e0a1 168 SMART SM00506 1 140 3.2E-5 T 29-03-2018 IPR002589 Macro domain Y880_RS05805 2755af2505e318438ee9ca2f5c92e0a1 168 Pfam PF01661 Macro domain 28 137 4.0E-6 T 29-03-2018 IPR002589 Macro domain Y880_RS05805 2755af2505e318438ee9ca2f5c92e0a1 168 Gene3D G3DSA:3.40.220.10 1 156 7.1E-18 T 29-03-2018 Y880_RS22200 916bf1fdf1f0eb815e396ff44440f669 129 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 99 1.0E-47 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y880_RS22200 916bf1fdf1f0eb815e396ff44440f669 129 SUPERFAMILY SSF89919 2 106 1.83E-35 T 29-03-2018 IPR023799 Ribosome-binding factor A domain Y880_RS22200 916bf1fdf1f0eb815e396ff44440f669 129 Pfam PF02033 Ribosome-binding factor A 7 112 2.1E-32 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y880_RS22200 916bf1fdf1f0eb815e396ff44440f669 129 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 114 3.6E-34 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y880_RS22200 916bf1fdf1f0eb815e396ff44440f669 129 ProSitePatterns PS01319 Ribosome-binding factor A signature. 78 99 - T 29-03-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 Y880_RS22200 916bf1fdf1f0eb815e396ff44440f669 129 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 119 23.242 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y880_RS22200 916bf1fdf1f0eb815e396ff44440f669 129 Gene3D G3DSA:3.30.300.20 5 119 1.7E-37 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS12600 944634fcd3b84aae49989bf8cab20294 237 Gene3D G3DSA:1.10.3720.10 2 228 5.6E-31 T 29-03-2018 Y880_RS12600 944634fcd3b84aae49989bf8cab20294 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 41 207 1.9E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS12600 944634fcd3b84aae49989bf8cab20294 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 20 122 1.4E-15 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS12600 944634fcd3b84aae49989bf8cab20294 237 SUPERFAMILY SSF161098 17 217 4.19E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS11830 fafc76027b4cf0f5e3b7cf29c214a143 197 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 59 162 4.9E-39 T 29-03-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 Y880_RS02205 34c8e43657344d77024e3c60af4d7501 462 SUPERFAMILY SSF117143 80 257 6.93E-76 T 29-03-2018 Y880_RS02205 34c8e43657344d77024e3c60af4d7501 462 SUPERFAMILY SSF117143 300 423 6.93E-76 T 29-03-2018 Y880_RS02205 34c8e43657344d77024e3c60af4d7501 462 Pfam PF07559 Flagellar basal body protein FlaE 176 343 3.0E-27 T 29-03-2018 IPR011491 Flagellar hook protein FlgE Y880_RS02205 34c8e43657344d77024e3c60af4d7501 462 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 444 3.6E-97 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Y880_RS02205 34c8e43657344d77024e3c60af4d7501 462 Gene3D G3DSA:2.60.98.20 150 344 1.2E-30 T 29-03-2018 IPR011491 Flagellar hook protein FlgE Y880_RS02205 34c8e43657344d77024e3c60af4d7501 462 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 383 461 8.3E-19 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y880_RS02205 34c8e43657344d77024e3c60af4d7501 462 Pfam PF00460 Flagella basal body rod protein 3 33 2.7E-7 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 Pfam PF00072 Response regulator receiver domain 5 109 6.7E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 PIRSF PIRSF000876 1 368 1.4E-130 T 29-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 368 39.46 T 29-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 SUPERFAMILY SSF52738 182 367 3.79E-64 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 Gene3D G3DSA:3.40.50.180 175 368 7.5E-72 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 SMART SM00448 3 122 2.2E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 Pfam PF01339 CheB methylesterase 187 363 2.8E-57 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 SUPERFAMILY SSF52172 3 109 3.27E-28 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS04265 a669f3eacd8fb10c02df40ac4fb15b2a 368 Gene3D G3DSA:3.40.50.2300 2 148 3.5E-29 T 29-03-2018 Y880_RS20510 025ae64b9e8fdbb8e0b897dbbb8f608a 148 Pfam PF06295 Protein of unknown function (DUF1043) 14 131 2.4E-20 T 29-03-2018 IPR009386 Protein of unknown function DUF1043 Y880_RS20525 f56531c9c79079e13d581adf4139859a 367 Gene3D G3DSA:1.10.8.350 54 131 5.0E-9 T 29-03-2018 Y880_RS20525 f56531c9c79079e13d581adf4139859a 367 Gene3D G3DSA:1.10.8.350 132 235 7.9E-36 T 29-03-2018 Y880_RS20525 f56531c9c79079e13d581adf4139859a 367 SUPERFAMILY SSF53955 50 354 8.72E-96 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS20525 f56531c9c79079e13d581adf4139859a 367 Pfam PF13406 Transglycosylase SLT domain 59 352 2.4E-92 T 29-03-2018 IPR031304 Transglycosylase SLT domain 2 Y880_RS20525 f56531c9c79079e13d581adf4139859a 367 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 63 355 2.5E-116 T 29-03-2018 IPR011757 Lytic transglycosylase MltB Y880_RS20525 f56531c9c79079e13d581adf4139859a 367 Gene3D G3DSA:1.10.530.10 241 361 3.8E-31 T 29-03-2018 Y880_RS02055 eaa75433cc5e5f5adb32fedd4842866c 381 SUPERFAMILY SSF110738 1 374 1.44E-135 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Y880_RS02055 eaa75433cc5e5f5adb32fedd4842866c 381 Gene3D G3DSA:3.90.1510.10 42 275 1.8E-94 T 29-03-2018 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 Y880_RS02055 eaa75433cc5e5f5adb32fedd4842866c 381 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 2.3E-162 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Y880_RS02055 eaa75433cc5e5f5adb32fedd4842866c 381 PIRSF PIRSF006078 1 377 2.8E-134 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Y880_RS02055 eaa75433cc5e5f5adb32fedd4842866c 381 Pfam PF02595 Glycerate kinase family 3 372 6.0E-149 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 5 364 2.6E-184 T 29-03-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 9 362 6.8E-168 T 29-03-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 SUPERFAMILY SSF53383 8 367 6.53E-84 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 Gene3D G3DSA:3.40.640.10 18 255 3.9E-30 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 Gene3D G3DSA:3.90.1150.10 256 367 2.7E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 Pfam PF00266 Aminotransferase class-V 37 304 1.3E-19 T 29-03-2018 IPR000192 Aminotransferase class V domain Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 371 207.87 T 29-03-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Y880_RS03445 30030b6fac1cbb03c58f9cda83016c5c 371 PIRSF PIRSF000524 1 370 9.1E-62 T 29-03-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 Y880_RS12960 00e405631ec38beed33f9db88fcb8154 75 Pfam PF04400 (Na+)-NQR maturation NqrM 21 59 4.8E-14 T 29-03-2018 IPR007495 (Na+)-NQR maturation factor NqrM Y880_RS02180 5baf72afb6e4d865afd17f72a3ce4db3 105 Pfam PF10052 Protein of unknown function (DUF2288) 8 97 3.7E-31 T 29-03-2018 IPR018741 Protein of unknown function DUF2288 Y880_RS00765 7f89191917e3a2fbdefb7dd6929c4d6a 381 PIRSF PIRSF028408 1 381 2.9E-117 T 29-03-2018 IPR014544 Uncharacterised conserved protein UCP028408 Y880_RS00765 7f89191917e3a2fbdefb7dd6929c4d6a 381 Pfam PF11795 Uncharacterized protein conserved in bacteria N-term (DUF3322) 4 186 1.7E-34 T 29-03-2018 IPR024537 Domain of unknown function DUF3322 Y880_RS00765 7f89191917e3a2fbdefb7dd6929c4d6a 381 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 206 372 6.8E-39 T 29-03-2018 IPR024534 Domain of unknown function DUF2220 Y880_RS23120 bc50be6b6d7b21244b2e521f6b5d7843 307 SUPERFAMILY SSF52266 71 304 2.51E-10 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS23120 bc50be6b6d7b21244b2e521f6b5d7843 307 SUPERFAMILY SSF52266 31 43 2.51E-10 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain Y880_RS23120 bc50be6b6d7b21244b2e521f6b5d7843 307 Gene3D G3DSA:3.40.50.1110 17 307 6.4E-47 T 29-03-2018 Y880_RS23120 bc50be6b6d7b21244b2e521f6b5d7843 307 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 32 300 1.5E-5 T 29-03-2018 IPR001087 GDSL lipase/esterase GO:0016788 Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 Gene3D G3DSA:3.40.50.720 40 256 8.5E-60 T 29-03-2018 Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 Gene3D G3DSA:3.40.50.720 1 39 5.3E-8 T 29-03-2018 Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 SUPERFAMILY SSF51735 1 255 8.06E-74 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 6 256 1.2E-101 T 29-03-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 8.3E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 8.3E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 8.3E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 Pfam PF00106 short chain dehydrogenase 6 195 1.6E-54 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.2E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.2E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.2E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.2E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.2E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS07170 f83785ae7ddf2842989c226abe926dd9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.2E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS10550 a9ffdc98ca470e2c315f42d12471ac5b 206 Gene3D G3DSA:1.10.3890.10 3 205 7.7E-78 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 Y880_RS10550 a9ffdc98ca470e2c315f42d12471ac5b 206 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 196 2.0E-93 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 Y880_RS10550 a9ffdc98ca470e2c315f42d12471ac5b 206 Pfam PF04356 Protein of unknown function (DUF489) 7 197 1.4E-70 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 Y880_RS10550 a9ffdc98ca470e2c315f42d12471ac5b 206 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 205 33.94 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 Y880_RS10550 a9ffdc98ca470e2c315f42d12471ac5b 206 SUPERFAMILY SSF101322 4 205 2.09E-73 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 Y880_RS19045 4c9c487b8c1cce2411c2347a0d09ff8a 265 Gene3D G3DSA:3.40.50.300 1 241 4.8E-57 T 29-03-2018 Y880_RS19045 4c9c487b8c1cce2411c2347a0d09ff8a 265 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS19045 4c9c487b8c1cce2411c2347a0d09ff8a 265 SUPERFAMILY SSF52540 5 230 5.0E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19045 4c9c487b8c1cce2411c2347a0d09ff8a 265 Pfam PF00005 ABC transporter 21 168 2.1E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS19045 4c9c487b8c1cce2411c2347a0d09ff8a 265 SMART SM00382 29 238 5.7E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 5.1E-18 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 SUPERFAMILY SSF47203 287 475 9.83E-48 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 451 8.2E-20 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 SUPERFAMILY SSF56645 38 277 7.33E-60 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 592 1.8E-35 T 29-03-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Gene3D G3DSA:1.10.540.10 11 160 7.8E-21 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 40 158 2.7E-12 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Gene3D G3DSA:1.20.140.10 296 466 1.8E-39 T 29-03-2018 Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 35 7.2E-11 T 29-03-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y880_RS29215 81a96685202d77a5785adebb221e9e9e 601 Gene3D G3DSA:2.40.110.10 161 274 9.4E-25 T 29-03-2018 Y880_RS24890 f97a1e75d9e233b74472198058ddfe4c 163 Gene3D G3DSA:1.20.1550.10 1 163 1.7E-42 T 29-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain Y880_RS24890 f97a1e75d9e233b74472198058ddfe4c 163 SUPERFAMILY SSF158442 10 158 1.7E-37 T 29-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain Y880_RS24890 f97a1e75d9e233b74472198058ddfe4c 163 Pfam PF02600 Disulfide bond formation protein DsbB 7 157 2.5E-38 T 29-03-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 Y880_RS24890 f97a1e75d9e233b74472198058ddfe4c 163 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 2 163 22.119 T 29-03-2018 IPR022920 Disulphide bond formation protein DsbB Y880_RS11430 957b9469f2d2bac02e5fcd58d96fb23a 114 SMART SM00530 5 64 9.3E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS11430 957b9469f2d2bac02e5fcd58d96fb23a 114 Pfam PF13560 Helix-turn-helix domain 2 73 9.1E-8 T 29-03-2018 Y880_RS11430 957b9469f2d2bac02e5fcd58d96fb23a 114 SUPERFAMILY SSF47413 1 70 6.19E-11 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS11430 957b9469f2d2bac02e5fcd58d96fb23a 114 Gene3D G3DSA:1.10.260.40 1 98 2.1E-17 T 29-03-2018 Y880_RS27985 5e9dd74c67f394ee77147f3c9045354a 310 SUPERFAMILY SSF53850 94 300 2.17E-31 T 29-03-2018 Y880_RS27985 5e9dd74c67f394ee77147f3c9045354a 310 Gene3D G3DSA:1.10.10.10 7 92 4.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27985 5e9dd74c67f394ee77147f3c9045354a 310 Pfam PF03466 LysR substrate binding domain 98 301 8.2E-26 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27985 5e9dd74c67f394ee77147f3c9045354a 310 Gene3D G3DSA:3.40.190.10 94 191 6.6E-13 T 29-03-2018 Y880_RS27985 5e9dd74c67f394ee77147f3c9045354a 310 SUPERFAMILY SSF46785 8 87 3.24E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27985 5e9dd74c67f394ee77147f3c9045354a 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 68 1.9E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27985 5e9dd74c67f394ee77147f3c9045354a 310 Gene3D G3DSA:3.40.190.10 192 276 6.3E-9 T 29-03-2018 Y880_RS11355 49065371ca86f9f9c386bcf815e0c9b5 136 SUPERFAMILY SSF55811 4 128 3.93E-30 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS11355 49065371ca86f9f9c386bcf815e0c9b5 136 PRINTS PR00502 NUDIX hydrolase family signature 32 46 7.5E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS11355 49065371ca86f9f9c386bcf815e0c9b5 136 PRINTS PR00502 NUDIX hydrolase family signature 46 61 7.5E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS11355 49065371ca86f9f9c386bcf815e0c9b5 136 Gene3D G3DSA:3.90.79.10 1 131 5.0E-30 T 29-03-2018 Y880_RS11355 49065371ca86f9f9c386bcf815e0c9b5 136 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS11355 49065371ca86f9f9c386bcf815e0c9b5 136 Pfam PF00293 NUDIX domain 5 118 4.9E-21 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS08280 6a30d65586b4ec48f90a2ebcfe7c3d6a 440 SUPERFAMILY SSF103473 18 425 5.49E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS08280 6a30d65586b4ec48f90a2ebcfe7c3d6a 440 Gene3D G3DSA:1.20.1250.20 10 220 1.7E-28 T 29-03-2018 Y880_RS08280 6a30d65586b4ec48f90a2ebcfe7c3d6a 440 Gene3D G3DSA:1.20.1250.20 237 429 2.2E-18 T 29-03-2018 Y880_RS08280 6a30d65586b4ec48f90a2ebcfe7c3d6a 440 Pfam PF07690 Major Facilitator Superfamily 26 390 2.9E-42 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS06040 43d6ed368d8b4b31f6ffef4fe7846ec9 287 SUPERFAMILY SSF52402 2 124 6.53E-15 T 29-03-2018 Y880_RS06040 43d6ed368d8b4b31f6ffef4fe7846ec9 287 Gene3D G3DSA:3.40.50.620 1 128 3.5E-12 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS06040 43d6ed368d8b4b31f6ffef4fe7846ec9 287 Gene3D G3DSA:3.40.50.620 132 276 1.4E-18 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS06040 43d6ed368d8b4b31f6ffef4fe7846ec9 287 SUPERFAMILY SSF52402 133 276 1.34E-16 T 29-03-2018 Y880_RS06040 43d6ed368d8b4b31f6ffef4fe7846ec9 287 Pfam PF00582 Universal stress protein family 133 272 1.0E-13 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 Pfam PF00255 Glutathione peroxidase 39 134 1.7E-22 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 Gene3D G3DSA:3.40.30.10 29 182 4.1E-31 T 29-03-2018 Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 ProSitePatterns PS00460 Glutathione peroxidases active site. 49 64 - T 29-03-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 PRINTS PR01011 Glutathione peroxidase family signature 142 151 2.9E-9 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 PRINTS PR01011 Glutathione peroxidase family signature 47 64 2.9E-9 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 PRINTS PR01011 Glutathione peroxidase family signature 82 98 2.9E-9 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 SUPERFAMILY SSF52833 34 180 2.32E-42 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS03330 42cccd4a09788b80d4dfeb858ad7708c 184 PIRSF PIRSF000303 1 184 1.6E-56 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS00140 babf2ccebe87f4568802bcd9e6706f83 248 Pfam PF13103 TonB C terminal 163 230 2.1E-6 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS00140 babf2ccebe87f4568802bcd9e6706f83 248 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 189 238 4.2E-7 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS00140 babf2ccebe87f4568802bcd9e6706f83 248 SUPERFAMILY SSF74653 71 84 5.49E-15 T 29-03-2018 Y880_RS00140 babf2ccebe87f4568802bcd9e6706f83 248 SUPERFAMILY SSF74653 148 239 5.49E-15 T 29-03-2018 Y880_RS00140 babf2ccebe87f4568802bcd9e6706f83 248 Gene3D G3DSA:3.30.1150.10 147 239 2.8E-10 T 29-03-2018 Y880_RS19660 9667f5b3048ea401eb461655473a4d0a 234 Gene3D G3DSA:3.30.70.1070 154 225 2.7E-4 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 Y880_RS19660 9667f5b3048ea401eb461655473a4d0a 234 Gene3D G3DSA:3.30.70.1070 80 151 8.9E-6 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 Y880_RS19660 9667f5b3048ea401eb461655473a4d0a 234 Pfam PF05036 Sporulation related domain 79 148 1.0E-5 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 Y880_RS19660 9667f5b3048ea401eb461655473a4d0a 234 SUPERFAMILY SSF110997 80 148 8.37E-8 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 Y880_RS08410 014f9c6be9c037ca9d1110e1c21123dc 455 Pfam PF01266 FAD dependent oxidoreductase 41 400 1.5E-52 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS08410 014f9c6be9c037ca9d1110e1c21123dc 455 Gene3D G3DSA:3.50.50.60 30 422 4.1E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08410 014f9c6be9c037ca9d1110e1c21123dc 455 SUPERFAMILY SSF51905 39 262 1.24E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08410 014f9c6be9c037ca9d1110e1c21123dc 455 SUPERFAMILY SSF51905 361 427 1.24E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS06585 00ad7d85d26968d6c470e7e890b238a3 222 Gene3D G3DSA:1.20.90.10 17 128 1.0E-7 T 29-03-2018 IPR016090 Phospholipase A2 domain GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 Y880_RS05325 6c0070c70575939676b20768985c0c1f 388 Pfam PF00155 Aminotransferase class I and II 51 375 3.1E-30 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS05325 6c0070c70575939676b20768985c0c1f 388 Gene3D G3DSA:3.90.1150.10 285 383 1.1E-30 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS05325 6c0070c70575939676b20768985c0c1f 388 SUPERFAMILY SSF53383 2 381 7.7E-94 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS05325 6c0070c70575939676b20768985c0c1f 388 Gene3D G3DSA:3.40.640.10 42 284 1.9E-46 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS09820 2df69e5a0ce957da59a94e919f0683fe 171 Pfam PF05163 DinB family 1 170 1.6E-41 T 29-03-2018 IPR007837 DNA damage-inducible protein DinB Y880_RS09820 2df69e5a0ce957da59a94e919f0683fe 171 Gene3D G3DSA:1.20.120.450 13 164 2.0E-15 T 29-03-2018 Y880_RS09820 2df69e5a0ce957da59a94e919f0683fe 171 SUPERFAMILY SSF109854 15 161 5.49E-21 T 29-03-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Y880_RS24085 a170810abb56561f1c869bcc18108523 250 Pfam PF07702 UTRA domain 106 243 1.9E-36 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS24085 a170810abb56561f1c869bcc18108523 250 SUPERFAMILY SSF46785 20 89 2.04E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24085 a170810abb56561f1c869bcc18108523 250 Gene3D G3DSA:3.40.1410.10 86 249 3.1E-42 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS24085 a170810abb56561f1c869bcc18108523 250 SMART SM00345 26 85 1.1E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS24085 a170810abb56561f1c869bcc18108523 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 1.0E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS24085 a170810abb56561f1c869bcc18108523 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 1.0E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS24085 a170810abb56561f1c869bcc18108523 250 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 21 249 1.6E-108 T 29-03-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 Y880_RS24085 a170810abb56561f1c869bcc18108523 250 SUPERFAMILY SSF64288 73 248 2.2E-45 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS24085 a170810abb56561f1c869bcc18108523 250 SMART SM00866 106 243 2.8E-36 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS24085 a170810abb56561f1c869bcc18108523 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 85 9.5E-20 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS24085 a170810abb56561f1c869bcc18108523 250 Gene3D G3DSA:1.10.10.10 11 85 5.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 Hamap MF_01917 Cardiolipin synthase B [clsB]. 2 376 52.769 T 29-03-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 SUPERFAMILY SSF56024 183 352 4.49E-40 T 29-03-2018 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 PIRSF PIRSF000850 4 75 0.018 T 29-03-2018 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 PIRSF PIRSF000850 129 252 0.57 T 29-03-2018 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 PIRSF PIRSF000850 250 344 0.035 T 29-03-2018 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 Gene3D G3DSA:3.30.870.10 1 169 9.6E-32 T 29-03-2018 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 SMART SM00155 278 305 2.0 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 SMART SM00155 108 135 3.6E-4 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 Gene3D G3DSA:3.30.870.10 189 353 5.9E-31 T 29-03-2018 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 SUPERFAMILY SSF56024 3 175 5.97E-42 T 29-03-2018 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 Pfam PF13091 PLD-like domain 24 140 5.5E-14 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS07995 a37521a76284ce8905b8cff65a1b8148 385 Pfam PF13091 PLD-like domain 206 330 9.4E-25 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 184 199 1.3E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 199 215 1.3E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 170 211 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 SUPERFAMILY SSF46689 117 166 1.25E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 Pfam PF08448 PAS fold 4 106 3.5E-19 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 SUPERFAMILY SSF46689 173 219 9.41E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 Gene3D G3DSA:3.30.450.20 1 110 4.0E-13 T 29-03-2018 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 Pfam PF12833 Helix-turn-helix domain 141 216 2.1E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 Gene3D G3DSA:1.10.10.60 111 170 9.1E-11 T 29-03-2018 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 Gene3D G3DSA:1.10.10.60 172 224 2.4E-16 T 29-03-2018 Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 SUPERFAMILY SSF55785 4 101 1.19E-11 T 29-03-2018 IPR000014 PAS domain Y880_RS03205 54720bd9097297518a2e5c6fa5457232 224 SMART SM00342 133 215 5.6E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Gene3D G3DSA:3.30.450.20 551 678 1.1E-22 T 29-03-2018 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SUPERFAMILY SSF55785 539 668 1.92E-19 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00052 858 1105 1.3E-77 T 29-03-2018 IPR001633 EAL domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SUPERFAMILY SSF141868 865 1112 1.44E-74 T 29-03-2018 IPR001633 EAL domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00091 300 366 7.2E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00091 555 624 1.1E-6 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00091 427 495 5.2 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Gene3D G3DSA:3.30.450.20 422 550 1.9E-22 T 29-03-2018 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Gene3D G3DSA:3.30.450.20 276 421 1.5E-27 T 29-03-2018 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 299 421 4.3E-26 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 552 681 8.2E-10 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00267 674 846 1.3E-58 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00086 501 543 2.3E-8 T 29-03-2018 IPR001610 PAC motif Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00086 632 674 120.0 T 29-03-2018 IPR001610 PAC motif Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SMART SM00086 373 415 1.3E-7 T 29-03-2018 IPR001610 PAC motif Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SUPERFAMILY SSF55785 435 544 1.31E-16 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 683 845 6.0E-42 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SUPERFAMILY SSF55785 307 418 6.6E-21 T 29-03-2018 IPR000014 PAS domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Pfam PF00990 Diguanylate cyclase, GGDEF domain 685 842 8.5E-43 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Pfam PF08447 PAS fold 450 537 4.5E-17 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Pfam PF08447 PAS fold 324 406 8.9E-11 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Pfam PF00563 EAL domain 866 1100 6.4E-64 T 29-03-2018 IPR001633 EAL domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Pfam PF05231 MASE1 16 289 2.4E-17 T 29-03-2018 IPR007895 MASE1 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Gene3D G3DSA:3.30.70.270 679 854 2.4E-56 T 29-03-2018 Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Gene3D G3DSA:3.20.20.450 860 1119 2.1E-77 T 29-03-2018 IPR001633 EAL domain Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 SUPERFAMILY SSF55073 690 846 3.14E-47 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS02785 5eda72e21f5be0d625484ebafa3e3c01 1120 Pfam PF08448 PAS fold 563 675 1.1E-11 T 29-03-2018 IPR013656 PAS fold-4 Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 2.9E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 220 3.4E-97 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 SMART SM00448 1 111 2.3E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Gene3D G3DSA:1.10.10.10 121 227 7.8E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 SUPERFAMILY SSF52172 1 176 1.13E-39 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Pfam PF00072 Response regulator receiver domain 3 111 8.5E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Gene3D G3DSA:3.40.50.2300 1 120 1.7E-34 T 29-03-2018 Y880_RS04155 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 SMART SM00862 145 220 9.6E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS24410 34b6027f1b23a28c1e1df4695e252968 181 SUPERFAMILY SSF51182 1 178 8.22E-80 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS24410 34b6027f1b23a28c1e1df4695e252968 181 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 175 1.6E-75 T 29-03-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Y880_RS24410 34b6027f1b23a28c1e1df4695e252968 181 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 181 3.0E-104 T 29-03-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Y880_RS24410 34b6027f1b23a28c1e1df4695e252968 181 Gene3D G3DSA:2.60.120.10 1 179 1.3E-78 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS24410 34b6027f1b23a28c1e1df4695e252968 181 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 177 1.6E-90 T 29-03-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Y880_RS08500 11d7b9617c541b1149a023823403ff08 303 Gene3D G3DSA:3.90.550.10 2 227 2.5E-31 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS08500 11d7b9617c541b1149a023823403ff08 303 Pfam PF13641 Glycosyltransferase like family 2 3 220 8.0E-13 T 29-03-2018 Y880_RS08500 11d7b9617c541b1149a023823403ff08 303 SUPERFAMILY SSF53448 5 219 4.97E-35 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS06795 358a33f77d6b1928f4dc6f95bec4fc8d 756 SUPERFAMILY SSF82784 2 127 2.09E-20 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS06795 358a33f77d6b1928f4dc6f95bec4fc8d 756 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 159 551 3.6E-95 T 29-03-2018 IPR003776 YcaO-like domain Y880_RS06795 358a33f77d6b1928f4dc6f95bec4fc8d 756 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 205 540 1.9E-70 T 29-03-2018 IPR003776 YcaO-like domain Y880_RS06795 358a33f77d6b1928f4dc6f95bec4fc8d 756 Gene3D G3DSA:3.30.300.20 1 134 1.5E-15 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS06795 358a33f77d6b1928f4dc6f95bec4fc8d 756 TIGRFAM TIGR03549 TIGR03549: YcaO domain protein 2 727 0.0 T 29-03-2018 IPR019938 YcaO domain protein Y880_RS06795 358a33f77d6b1928f4dc6f95bec4fc8d 756 Pfam PF02566 OsmC-like protein 32 126 6.0E-10 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS26110 bb8f1caa0efecdb6a0c9caedb3792f21 259 Gene3D G3DSA:3.40.80.10 22 177 1.1E-45 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS26110 bb8f1caa0efecdb6a0c9caedb3792f21 259 SMART SM00644 24 165 1.0E-41 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS26110 bb8f1caa0efecdb6a0c9caedb3792f21 259 SUPERFAMILY SSF55846 22 177 1.16E-54 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS26110 bb8f1caa0efecdb6a0c9caedb3792f21 259 Pfam PF01471 Putative peptidoglycan binding domain 199 253 1.2E-8 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS26110 bb8f1caa0efecdb6a0c9caedb3792f21 259 Gene3D G3DSA:1.10.101.10 180 259 3.3E-10 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS26110 bb8f1caa0efecdb6a0c9caedb3792f21 259 SUPERFAMILY SSF47090 194 255 4.32E-17 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS26110 bb8f1caa0efecdb6a0c9caedb3792f21 259 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 34 166 2.1E-31 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y880_RS05435 9928e092ada7dcfcb0edf4ee384cc5b8 185 Pfam PF01713 Smr domain 95 176 2.3E-21 T 29-03-2018 IPR002625 Smr domain Y880_RS05435 9928e092ada7dcfcb0edf4ee384cc5b8 185 SUPERFAMILY SSF160443 94 176 1.7E-15 T 29-03-2018 IPR002625 Smr domain Y880_RS05435 9928e092ada7dcfcb0edf4ee384cc5b8 185 SMART SM00463 92 176 1.0E-8 T 29-03-2018 IPR002625 Smr domain Y880_RS29620 82d630343f0451bffb467118d42bb260 117 SMART SM00905 4 114 1.2E-50 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y880_RS29620 82d630343f0451bffb467118d42bb260 117 TIGRFAM TIGR00526 folB_dom: FolB domain 2 115 9.3E-32 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y880_RS29620 82d630343f0451bffb467118d42bb260 117 SUPERFAMILY SSF55620 2 115 1.72E-35 T 29-03-2018 Y880_RS29620 82d630343f0451bffb467118d42bb260 117 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 114 5.9E-25 T 29-03-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y880_RS29620 82d630343f0451bffb467118d42bb260 117 Pfam PF02152 Dihydroneopterin aldolase 4 113 5.1E-32 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y880_RS29620 82d630343f0451bffb467118d42bb260 117 Gene3D G3DSA:3.30.1130.10 1 117 7.2E-36 T 29-03-2018 Y880_RS25215 292e167d6b14531abf08cb923b2e6f44 402 Gene3D G3DSA:3.40.50.10300 184 402 6.6E-70 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Y880_RS25215 292e167d6b14531abf08cb923b2e6f44 402 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 395 3.8E-140 T 29-03-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 Y880_RS25215 292e167d6b14531abf08cb923b2e6f44 402 Pfam PF02441 Flavoprotein 7 179 7.5E-42 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y880_RS25215 292e167d6b14531abf08cb923b2e6f44 402 SUPERFAMILY SSF102645 184 400 5.89E-76 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Y880_RS25215 292e167d6b14531abf08cb923b2e6f44 402 Gene3D G3DSA:3.40.50.1950 1 183 2.2E-54 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y880_RS25215 292e167d6b14531abf08cb923b2e6f44 402 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 370 1.3E-71 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Y880_RS25215 292e167d6b14531abf08cb923b2e6f44 402 SUPERFAMILY SSF52507 1 179 2.35E-59 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y880_RS05235 18bd32c94b7832943fa7cede502cb9bc 302 Hamap MF_00313 Glutaminase [glsA]. 1 302 47.144 T 29-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Y880_RS05235 18bd32c94b7832943fa7cede502cb9bc 302 TIGRFAM TIGR03814 Gln_ase: glutaminase A 5 302 9.7E-129 T 29-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Y880_RS05235 18bd32c94b7832943fa7cede502cb9bc 302 Gene3D G3DSA:3.40.710.10 1 302 1.2E-122 T 29-03-2018 Y880_RS05235 18bd32c94b7832943fa7cede502cb9bc 302 Pfam PF04960 Glutaminase 19 302 4.3E-111 T 29-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Y880_RS05235 18bd32c94b7832943fa7cede502cb9bc 302 SUPERFAMILY SSF56601 1 302 4.38E-109 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS11725 df517d5e484ae89ef47ad460162fd65c 146 SUPERFAMILY SSF50249 3 133 1.99E-24 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS11725 df517d5e484ae89ef47ad460162fd65c 146 PIRSF PIRSF002070 1 146 1.5E-23 T 29-03-2018 Y880_RS11725 df517d5e484ae89ef47ad460162fd65c 146 Gene3D G3DSA:2.40.50.140 2 118 2.0E-22 T 29-03-2018 Y880_RS11725 df517d5e484ae89ef47ad460162fd65c 146 Pfam PF00436 Single-strand binding protein family 9 109 8.6E-12 T 29-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 Pfam PF01266 FAD dependent oxidoreductase 23 345 5.4E-49 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 Gene3D G3DSA:3.50.50.60 5 89 0.0085 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 SUPERFAMILY SSF51905 22 345 3.78E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 417 505 1.7E-13 T 29-03-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 Gene3D G3DSA:3.30.9.10 100 201 1.2E-11 T 29-03-2018 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 Gene3D G3DSA:3.30.9.10 202 341 2.2E-32 T 29-03-2018 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 334 340 2.0E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 51 63 2.0E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 96 108 2.0E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 365 377 2.0E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 45 2.0E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS13130 91eb66e6e3fa3a8d66b6945f3a429419 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 34 2.0E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 Y880_RS28405 83f1e4ce7ae6c2932efcb4473f12de7f 157 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 103 127 - T 29-03-2018 IPR020935 Phosphodiesterase YfcE, conserved site Y880_RS28405 83f1e4ce7ae6c2932efcb4473f12de7f 157 SUPERFAMILY SSF56300 8 157 5.29E-35 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS28405 83f1e4ce7ae6c2932efcb4473f12de7f 157 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 9 152 2.3E-24 T 29-03-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Y880_RS28405 83f1e4ce7ae6c2932efcb4473f12de7f 157 Gene3D G3DSA:3.60.21.10 2 157 2.7E-20 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS28405 83f1e4ce7ae6c2932efcb4473f12de7f 157 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 9 145 2.7E-31 T 29-03-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Y880_RS17590 b265ef03eee2d5d9bacc977c6f17e420 468 Gene3D G3DSA:1.20.1250.20 246 466 1.2E-22 T 29-03-2018 Y880_RS17590 b265ef03eee2d5d9bacc977c6f17e420 468 Pfam PF07690 Major Facilitator Superfamily 46 378 1.2E-12 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS17590 b265ef03eee2d5d9bacc977c6f17e420 468 Gene3D G3DSA:1.20.1250.20 29 244 1.5E-14 T 29-03-2018 Y880_RS17590 b265ef03eee2d5d9bacc977c6f17e420 468 TIGRFAM TIGR00886 2A0108: nitrite transporter 38 420 1.7E-119 T 29-03-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 Y880_RS17590 b265ef03eee2d5d9bacc977c6f17e420 468 SUPERFAMILY SSF103473 21 460 1.57E-36 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS20690 191ae1f88d11e97d6dab3eff5e629468 485 Pfam PF10150 Ribonuclease E/G family 115 389 5.5E-106 T 29-03-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Y880_RS20690 191ae1f88d11e97d6dab3eff5e629468 485 SUPERFAMILY SSF50249 39 118 1.94E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS20690 191ae1f88d11e97d6dab3eff5e629468 485 SMART SM00316 37 113 3.5E-10 T 29-03-2018 IPR022967 RNA-binding domain, S1 Y880_RS20690 191ae1f88d11e97d6dab3eff5e629468 485 Gene3D G3DSA:2.40.50.140 32 118 5.7E-30 T 29-03-2018 Y880_RS20690 191ae1f88d11e97d6dab3eff5e629468 485 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 422 3.4E-160 T 29-03-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Y880_RS20690 191ae1f88d11e97d6dab3eff5e629468 485 Pfam PF00575 S1 RNA binding domain 38 100 6.1E-8 T 29-03-2018 IPR003029 S1 domain GO:0003676 Y880_RS05395 f0b673acf4c1b2bd08843fd0c1ceeaab 443 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 18 441 1.0E-141 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 Y880_RS05395 f0b673acf4c1b2bd08843fd0c1ceeaab 443 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 443 3.0E-152 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 Y880_RS22650 5d4a05dc3fb6aedc8ccdeaa9100ea632 151 Pfam PF09980 Predicted membrane protein (DUF2214) 3 148 2.7E-53 T 29-03-2018 IPR018706 Protein of unknown function DUF2214, membrane Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 SUPERFAMILY SSF52540 266 498 6.99E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 SMART SM00382 33 264 2.7E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 SMART SM00382 299 490 1.0E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 Pfam PF12698 ABC-2 family transporter protein 570 908 8.5E-43 T 29-03-2018 Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 SUPERFAMILY SSF52540 11 235 1.25E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 Gene3D G3DSA:3.40.1710.10 583 735 4.1E-25 T 29-03-2018 Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 Pfam PF00005 ABC transporter 291 434 3.3E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 Pfam PF00005 ABC transporter 25 171 9.0E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 Gene3D G3DSA:3.40.50.300 8 269 8.1E-61 T 29-03-2018 Y880_RS24760 566ed1e1f36cde0f3b8ba12d88bdf26e 916 Gene3D G3DSA:3.40.50.300 272 560 2.9E-64 T 29-03-2018 Y880_RS05475 c3acbae2160b001850134e76518f5e73 205 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 205 116.855 T 29-03-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|Reactome: R-HSA-1237112 Y880_RS05475 c3acbae2160b001850134e76518f5e73 205 SMART SM01007 10 198 5.8E-51 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS05475 c3acbae2160b001850134e76518f5e73 205 Gene3D G3DSA:3.40.225.10 1 205 6.7E-45 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS05475 c3acbae2160b001850134e76518f5e73 205 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 197 6.9E-38 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS05475 c3acbae2160b001850134e76518f5e73 205 SUPERFAMILY SSF53639 5 203 2.16E-46 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS05475 c3acbae2160b001850134e76518f5e73 205 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 12 202 7.4E-72 T 29-03-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|Reactome: R-HSA-1237112 Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 521 4.0E-116 T 29-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 Gene3D G3DSA:1.20.58.220 323 440 7.5E-19 T 29-03-2018 Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 308 1.8E-106 T 29-03-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 Pfam PF02690 Na+/Pi-cotransporter 13 147 2.0E-35 T 29-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 Pfam PF02690 Na+/Pi-cotransporter 158 258 1.2E-8 T 29-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 Gene3D G3DSA:1.20.58.220 441 534 4.1E-8 T 29-03-2018 Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 Pfam PF01895 PhoU domain 340 422 9.2E-12 T 29-03-2018 IPR026022 PhoU domain Y880_RS26045 89fb52c9fe86eff00d43cb1a6554156d 582 SUPERFAMILY SSF109755 320 532 3.66E-35 T 29-03-2018 Y880_RS03195 11a7914f8e7b908252614777432870d8 428 SUPERFAMILY SSF52016 7 114 4.87E-34 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS03195 11a7914f8e7b908252614777432870d8 428 Pfam PF04412 Protein of unknown function (DUF521) 161 426 7.5E-102 T 29-03-2018 IPR007506 Aconitase X catalytic domain, putative Y880_RS03195 11a7914f8e7b908252614777432870d8 428 Pfam PF01989 Protein of unknown function DUF126 28 103 1.6E-29 T 29-03-2018 IPR002840 Aconitase X swivel domain, putative Y880_RS03195 11a7914f8e7b908252614777432870d8 428 Gene3D G3DSA:3.50.30.10 8 136 5.6E-38 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y880_RS12045 61f60574bcef39e23bf0cfc039feb925 645 SUPERFAMILY SSF56349 100 402 2.06E-48 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y880_RS12045 61f60574bcef39e23bf0cfc039feb925 645 Gene3D G3DSA:1.10.150.130 89 211 2.6E-15 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal Y880_RS12045 61f60574bcef39e23bf0cfc039feb925 645 Gene3D G3DSA:1.10.443.10 212 402 3.1E-19 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS12045 61f60574bcef39e23bf0cfc039feb925 645 Pfam PF13356 Arm DNA-binding domain 7 88 3.8E-18 T 29-03-2018 IPR025166 Integrase, DNA-binding domain Y880_RS12045 61f60574bcef39e23bf0cfc039feb925 645 Pfam PF00589 Phage integrase family 216 392 2.1E-16 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS12045 61f60574bcef39e23bf0cfc039feb925 645 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 100 151 2.5E-5 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y880_RS28160 f32c4e9c14aabb4b57beee417915eed6 350 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 37 211 6.7E-39 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS28160 f32c4e9c14aabb4b57beee417915eed6 350 Gene3D G3DSA:1.10.10.60 228 289 0.07 T 29-03-2018 Y880_RS28160 f32c4e9c14aabb4b57beee417915eed6 350 SMART SM00342 254 335 1.4E-11 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS28160 f32c4e9c14aabb4b57beee417915eed6 350 Pfam PF12833 Helix-turn-helix domain 261 337 1.9E-15 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS28160 f32c4e9c14aabb4b57beee417915eed6 350 SUPERFAMILY SSF46689 289 338 7.17E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS28160 f32c4e9c14aabb4b57beee417915eed6 350 Gene3D G3DSA:1.10.10.60 290 348 4.4E-8 T 29-03-2018 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PIRSF PIRSF019574 1 363 1.5E-131 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 29 45 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 175 194 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 88 101 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 262 281 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 307 333 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 152 166 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 212 231 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 45 66 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 72 86 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 121 137 8.5E-65 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 Gene3D G3DSA:3.40.190.10 17 202 4.1E-31 T 29-03-2018 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 Pfam PF13416 Bacterial extracellular solute-binding protein 39 328 4.9E-33 T 29-03-2018 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 SUPERFAMILY SSF53850 26 362 3.67E-97 T 29-03-2018 Y880_RS10990 034fd32b5c2bb9cb392af8f6e5817e5e 363 Gene3D G3DSA:3.40.190.10 203 349 5.1E-16 T 29-03-2018 Y880_RS26950 b896da09e0ed331c49a8d53b17fc00d8 91 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 5 54 2.4E-25 T 29-03-2018 IPR012658 Conserved hypothetical protein CHP02443 Y880_RS26950 b896da09e0ed331c49a8d53b17fc00d8 91 Pfam PF09526 Probable metal-binding protein (DUF2387) 6 80 1.2E-36 T 29-03-2018 IPR012658 Conserved hypothetical protein CHP02443 Y880_RS26950 b896da09e0ed331c49a8d53b17fc00d8 91 Gene3D G3DSA:2.20.25.10 6 53 0.001 T 29-03-2018 Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 Pfam PF00561 alpha/beta hydrolase fold 28 278 6.0E-15 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 SUPERFAMILY SSF53474 5 294 1.91E-48 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 Gene3D G3DSA:3.40.50.1820 3 296 1.3E-39 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 PRINTS PR00412 Epoxide hydrolase signature 236 252 1.0E-15 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 PRINTS PR00412 Epoxide hydrolase signature 31 49 1.0E-15 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 PRINTS PR00412 Epoxide hydrolase signature 51 66 1.0E-15 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 PRINTS PR00412 Epoxide hydrolase signature 270 292 1.0E-15 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS18215 357511cba5bf06e830463b7baff865a9 296 PRINTS PR00412 Epoxide hydrolase signature 99 112 1.0E-15 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS02855 9e651527a7c5f9e76fda95e6fdd4ff13 472 Pfam PF13520 Amino acid permease 9 412 3.1E-61 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS02855 9e651527a7c5f9e76fda95e6fdd4ff13 472 PIRSF PIRSF006060 1 470 7.3E-45 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS02855 9e651527a7c5f9e76fda95e6fdd4ff13 472 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 472 8.7E-153 T 29-03-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 SUPERFAMILY SSF51338 2 176 4.07E-63 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 SUPERFAMILY SSF51338 417 476 2.01E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 Pfam PF00449 Urease alpha-subunit, N-terminal domain 1 118 2.0E-56 T 29-03-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 ProSitePatterns PS01120 Urease nickel ligands signature. 126 139 - T 29-03-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 Gene3D G3DSA:3.20.20.140 142 420 1.4E-166 T 29-03-2018 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 Gene3D G3DSA:3.20.20.140 421 552 6.5E-42 T 29-03-2018 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 566 2.1E-292 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 SUPERFAMILY SSF51556 128 431 2.17E-202 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 SUPERFAMILY SSF51556 480 566 2.17E-202 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 Hamap MF_01953 Urease subunit alpha [ureC]. 1 566 56.785 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 Gene3D G3DSA:2.30.40.10 63 141 2.7E-17 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 Pfam PF01979 Amidohydrolase family 124 450 3.6E-79 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 ProSitePatterns PS00145 Urease active site. 316 332 - T 29-03-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 400 415 6.5E-34 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 426 439 6.5E-34 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 333 349 6.5E-34 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS22855 012a6332c8a3f115e60502a1f5d82d6a 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 294 311 6.5E-34 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y880_RS07240 e881ecaa0716d1e74469ffefa9bfd72c 309 SUPERFAMILY SSF50956 11 304 2.09E-46 T 29-03-2018 Y880_RS07240 e881ecaa0716d1e74469ffefa9bfd72c 309 Pfam PF06977 SdiA-regulated 51 302 7.7E-96 T 29-03-2018 IPR009722 SdiA-regulated Y880_RS07240 e881ecaa0716d1e74469ffefa9bfd72c 309 Gene3D G3DSA:2.120.10.30 45 304 2.2E-9 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS19680 1cb04bca61be1d2a7adb2c7c65cabaa3 409 Pfam PF00149 Calcineurin-like phosphoesterase 1 231 2.2E-13 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y880_RS19680 1cb04bca61be1d2a7adb2c7c65cabaa3 409 Gene3D G3DSA:3.60.21.10 1 72 3.0E-14 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS19680 1cb04bca61be1d2a7adb2c7c65cabaa3 409 Gene3D G3DSA:3.60.21.10 73 281 1.4E-26 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS19680 1cb04bca61be1d2a7adb2c7c65cabaa3 409 SUPERFAMILY SSF56300 1 344 9.35E-56 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS19680 1cb04bca61be1d2a7adb2c7c65cabaa3 409 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 284 378 1.9E-15 T 29-03-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain Y880_RS19680 1cb04bca61be1d2a7adb2c7c65cabaa3 409 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 257 2.7E-54 T 29-03-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 Y880_RS11935 3cf2fe6fa31e0d91d0e22ddcb6157ab2 509 Pfam PF07916 TraG-like protein, N-terminal region 10 488 2.2E-96 T 29-03-2018 IPR012931 TraG-like, N-terminal Y880_RS29070 92da3d93a5def887e7cdc02d216552fc 575 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 109 530 1.3E-77 T 29-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 Y880_RS29805 aa53fae5c46a14a247752daf6200458a 177 Pfam PF09684 Phage tail protein (Tail_P2_I) 6 141 1.1E-41 T 29-03-2018 IPR006521 Tail protein I Y880_RS29805 aa53fae5c46a14a247752daf6200458a 177 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 6 142 1.6E-47 T 29-03-2018 IPR006521 Tail protein I Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 Pfam PF04055 Radical SAM superfamily 56 207 4.2E-14 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 Hamap MF_01694 Biotin synthase [bioB]. 11 319 41.875 T 29-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 226 316 7.3E-21 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 SMART SM00876 226 318 3.6E-48 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 PIRSF PIRSF001619 1 325 8.5E-137 T 29-03-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 Gene3D G3DSA:3.20.20.70 10 321 9.2E-59 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 TIGRFAM TIGR00433 bioB: biotin synthase 21 316 5.2E-125 T 29-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 SUPERFAMILY SSF102114 11 320 1.31E-92 T 29-03-2018 Y880_RS29185 ec1b7a389a1d804e3fa7e6820070df45 352 SMART SM00729 49 261 3.6E-39 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS12975 a6ad112fb16b83ef9937f49345302b92 202 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 200 3.4E-56 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS12975 a6ad112fb16b83ef9937f49345302b92 202 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 202 29.042 T 29-03-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 Y880_RS12975 a6ad112fb16b83ef9937f49345302b92 202 PIRSF PIRSF006102 1 202 6.3E-59 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS12975 a6ad112fb16b83ef9937f49345302b92 202 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 201 8.9E-108 T 29-03-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 Y880_RS04730 183bfb13e0687f924952352a4dc5e115 182 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 8 177 35.233 T 29-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Y880_RS04730 183bfb13e0687f924952352a4dc5e115 182 SUPERFAMILY SSF53271 5 177 6.03E-49 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS04730 183bfb13e0687f924952352a4dc5e115 182 Pfam PF00156 Phosphoribosyl transferase domain 48 157 1.4E-12 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y880_RS04730 183bfb13e0687f924952352a4dc5e115 182 Gene3D G3DSA:3.40.50.2020 1 180 4.9E-39 T 29-03-2018 Y880_RS04730 183bfb13e0687f924952352a4dc5e115 182 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 8 175 1.1E-58 T 29-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Y880_RS04900 beaf3ec6aca5e63fbb25190c4ab3162c 198 ProDom PD357862 YIJF PERIPLASMIC ECS4873 PRECURSOR CC1379 SIGNAL DOMAIN PM0035 28 195 3.0E-93 T 29-03-2018 IPR009706 Protein of unknown function DUF1287 Y880_RS04900 beaf3ec6aca5e63fbb25190c4ab3162c 198 Pfam PF06940 Domain of unknown function (DUF1287) 34 195 1.2E-66 T 29-03-2018 IPR009706 Protein of unknown function DUF1287 Y880_RS04900 beaf3ec6aca5e63fbb25190c4ab3162c 198 PIRSF PIRSF011444 3 198 6.4E-91 T 29-03-2018 IPR009706 Protein of unknown function DUF1287 Y880_RS04900 beaf3ec6aca5e63fbb25190c4ab3162c 198 Gene3D G3DSA:3.90.1720.10 27 198 1.1E-6 T 29-03-2018 Y880_RS00960 633ab40c50c950636d3c42eba8abc107 406 Pfam PF13692 Glycosyl transferases group 1 208 343 1.0E-22 T 29-03-2018 Y880_RS00960 633ab40c50c950636d3c42eba8abc107 406 Gene3D G3DSA:3.40.50.2000 5 194 5.2E-18 T 29-03-2018 Y880_RS00960 633ab40c50c950636d3c42eba8abc107 406 Pfam PF13439 Glycosyltransferase Family 4 18 183 5.3E-28 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS00960 633ab40c50c950636d3c42eba8abc107 406 Gene3D G3DSA:3.40.50.2000 195 360 1.4E-38 T 29-03-2018 Y880_RS00960 633ab40c50c950636d3c42eba8abc107 406 SUPERFAMILY SSF53756 7 378 1.93E-75 T 29-03-2018 Y880_RS12150 abcc051e27912171080caeb5950940fa 479 SUPERFAMILY SSF56954 4 29 5.75E-113 T 29-03-2018 Y880_RS12150 abcc051e27912171080caeb5950940fa 479 SUPERFAMILY SSF56954 55 472 5.75E-113 T 29-03-2018 Y880_RS12150 abcc051e27912171080caeb5950940fa 479 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 469 2.8E-119 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS12150 abcc051e27912171080caeb5950940fa 479 Gene3D G3DSA:1.20.1600.10 17 475 5.3E-107 T 29-03-2018 Y880_RS12150 abcc051e27912171080caeb5950940fa 479 Pfam PF02321 Outer membrane efflux protein 64 257 1.8E-26 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS12150 abcc051e27912171080caeb5950940fa 479 Pfam PF02321 Outer membrane efflux protein 286 467 9.1E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS08655 b34b497520bfa4aaf77b5d7458dc7a07 56 SUPERFAMILY SSF51735 1 54 1.26E-6 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08655 b34b497520bfa4aaf77b5d7458dc7a07 56 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 46 2.6E-6 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Y880_RS08655 b34b497520bfa4aaf77b5d7458dc7a07 56 Gene3D G3DSA:3.40.50.720 1 50 1.1E-12 T 29-03-2018 Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 Gene3D G3DSA:3.40.190.10 88 178 8.2E-19 T 29-03-2018 Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 SUPERFAMILY SSF46785 2 83 1.07E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 Gene3D G3DSA:1.10.10.10 1 80 5.3E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.0E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.0E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.0E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.2E-25 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 Pfam PF03466 LysR substrate binding domain 91 295 3.4E-46 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 Gene3D G3DSA:3.40.190.10 179 270 6.2E-26 T 29-03-2018 Y880_RS23700 87bb11c40d6046c2505bfc2eac48686e 301 SUPERFAMILY SSF53850 91 299 5.31E-39 T 29-03-2018 Y880_RS13790 ac6a6dfbc3d8dcf739240fa23e4b136e 474 Pfam PF13440 Polysaccharide biosynthesis protein 26 319 3.6E-25 T 29-03-2018 Y880_RS13790 ac6a6dfbc3d8dcf739240fa23e4b136e 474 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 327 460 8.6E-16 T 29-03-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Y880_RS27865 4646ab5f3ac66bc87e5496c344d21e22 158 Pfam PF01047 MarR family 44 100 1.2E-10 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS27865 4646ab5f3ac66bc87e5496c344d21e22 158 ProSitePatterns PS01117 MarR-type HTH domain signature. 73 108 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y880_RS27865 4646ab5f3ac66bc87e5496c344d21e22 158 Gene3D G3DSA:1.10.10.10 4 156 4.5E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27865 4646ab5f3ac66bc87e5496c344d21e22 158 SUPERFAMILY SSF46785 8 152 3.38E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27865 4646ab5f3ac66bc87e5496c344d21e22 158 SMART SM00347 34 137 2.2E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS26365 a5810862ac6d3cdc3afa5166a0ccfc8f 400 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 210 4.1E-58 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y880_RS26365 a5810862ac6d3cdc3afa5166a0ccfc8f 400 SMART SM00833 256 373 5.8E-46 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS26365 a5810862ac6d3cdc3afa5166a0ccfc8f 400 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 256 373 4.0E-29 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS26365 a5810862ac6d3cdc3afa5166a0ccfc8f 400 Gene3D G3DSA:3.30.1220.10 240 374 1.7E-34 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS26365 a5810862ac6d3cdc3afa5166a0ccfc8f 400 Gene3D G3DSA:3.40.50.300 2 229 2.1E-52 T 29-03-2018 Y880_RS26365 a5810862ac6d3cdc3afa5166a0ccfc8f 400 SUPERFAMILY SSF52540 3 310 4.78E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01330 7b990c623271fe88bc68bdf8427cc535 91 Pfam PF05449 Putative 3TM holin, Phage_holin_3 9 89 7.8E-27 T 29-03-2018 IPR008473 Putative 3TM holin, Phage holin 3 Y880_RS28645 22e083329ea532558f91a9122437bb21 299 SUPERFAMILY SSF161111 13 209 1.22E-55 T 29-03-2018 Y880_RS28645 22e083329ea532558f91a9122437bb21 299 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 14 289 2.9E-88 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y880_RS28645 22e083329ea532558f91a9122437bb21 299 Pfam PF01545 Cation efflux family 19 208 3.1E-45 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y880_RS28645 22e083329ea532558f91a9122437bb21 299 Gene3D G3DSA:3.30.70.1350 209 291 1.9E-13 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain Y880_RS28645 22e083329ea532558f91a9122437bb21 299 SUPERFAMILY SSF160240 213 286 1.57E-8 T 29-03-2018 Y880_RS28645 22e083329ea532558f91a9122437bb21 299 Gene3D G3DSA:1.20.1510.10 12 208 1.3E-53 T 29-03-2018 Y880_RS12390 9fc214fada44864f4863611dd6639a2f 254 Pfam PF02517 CAAX protease self-immunity 150 239 9.2E-14 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 Y880_RS28290 d67371e06fd524b651f5d3e09640fe2c 110 SUPERFAMILY SSF160113 54 107 1.96E-15 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 Y880_RS28290 d67371e06fd524b651f5d3e09640fe2c 110 Pfam PF07411 Domain of unknown function (DUF1508) 61 108 1.9E-19 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 Y880_RS28290 d67371e06fd524b651f5d3e09640fe2c 110 Pfam PF07411 Domain of unknown function (DUF1508) 10 53 1.7E-18 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 Y880_RS28290 d67371e06fd524b651f5d3e09640fe2c 110 SUPERFAMILY SSF160113 1 54 1.24E-16 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 Y880_RS28290 d67371e06fd524b651f5d3e09640fe2c 110 Gene3D G3DSA:3.10.20.10 42 68 0.22 T 29-03-2018 Y880_RS28290 d67371e06fd524b651f5d3e09640fe2c 110 Gene3D G3DSA:3.30.160.160 69 100 5.7E-14 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 Y880_RS28290 d67371e06fd524b651f5d3e09640fe2c 110 Gene3D G3DSA:3.30.160.160 5 41 5.3E-14 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 Gene3D G3DSA:1.25.40.20 20 94 1.4E-18 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 Pfam PF13857 Ankyrin repeats (many copies) 54 103 1.2E-7 T 29-03-2018 Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 SUPERFAMILY SSF48403 36 168 2.18E-30 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 Gene3D G3DSA:1.25.40.20 95 175 8.0E-20 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 SMART SM00248 65 94 0.0063 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 SMART SM00248 98 127 34.0 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 SMART SM00248 32 61 620.0 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS21405 8b8d8e79004b125a1a9953659fed8dfb 183 SMART SM00248 131 160 45.0 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 Y880_RS05335 813f3e065d24063aa2aefe30c14c5ce5 518 Pfam PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ 225 483 1.7E-77 T 29-03-2018 IPR017739 Type VI secretion system-associated, VCA0119 Y880_RS05335 813f3e065d24063aa2aefe30c14c5ce5 518 Pfam PF06812 ImpA, N-terminal, type VI secretion system 17 127 8.5E-30 T 29-03-2018 IPR010657 ImpA, N-terminal Y880_RS05335 813f3e065d24063aa2aefe30c14c5ce5 518 TIGRFAM TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family 12 484 1.6E-134 T 29-03-2018 IPR017739 Type VI secretion system-associated, VCA0119 Y880_RS07125 8c9c026affd9e23e5d5e4bf6650f4116 187 Pfam PF06475 Putative glycolipid-binding 17 186 7.8E-55 T 29-03-2018 IPR009467 Putative glycolipid-binding protein Y880_RS07125 8c9c026affd9e23e5d5e4bf6650f4116 187 SUPERFAMILY SSF159275 5 187 4.45E-57 T 29-03-2018 Y880_RS17320 cccac62952d94325b4a9248d3bd41fd1 372 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 362 55.524 T 29-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y880_RS17320 cccac62952d94325b4a9248d3bd41fd1 372 SUPERFAMILY SSF51713 1 362 3.01E-160 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y880_RS17320 cccac62952d94325b4a9248d3bd41fd1 372 Gene3D G3DSA:3.20.20.105 1 364 9.9E-157 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y880_RS17320 cccac62952d94325b4a9248d3bd41fd1 372 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 365 7.9E-167 T 29-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y880_RS17320 cccac62952d94325b4a9248d3bd41fd1 372 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 359 5.7E-90 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y880_RS17320 cccac62952d94325b4a9248d3bd41fd1 372 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 364 1.0E-158 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y880_RS16135 579d419480b0da3e8f1c65861488df50 440 Pfam PF00324 Amino acid permease 13 361 1.9E-38 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS16135 579d419480b0da3e8f1c65861488df50 440 PIRSF PIRSF006060 1 435 1.1E-68 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS12170 68c4610470f426adefd51d70511373d0 263 Gene3D G3DSA:3.90.226.10 4 198 4.7E-45 T 29-03-2018 Y880_RS12170 68c4610470f426adefd51d70511373d0 263 SUPERFAMILY SSF52096 9 263 1.38E-60 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS12170 68c4610470f426adefd51d70511373d0 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 262 1.3E-37 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS12170 68c4610470f426adefd51d70511373d0 263 Gene3D G3DSA:1.10.12.10 199 263 1.9E-9 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 Pfam PF03466 LysR substrate binding domain 101 293 1.0E-20 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 1.2E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 Gene3D G3DSA:3.40.190.10 94 302 1.7E-21 T 29-03-2018 Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 SUPERFAMILY SSF46785 7 89 6.19E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 9.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 9.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 9.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 Gene3D G3DSA:1.10.10.10 1 93 2.9E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09800 1905d5de590325036619e50d6e5b8eee 304 SUPERFAMILY SSF53850 93 294 4.52E-37 T 29-03-2018 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Pfam PF00501 AMP-binding enzyme 83 522 9.5E-93 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 1.8E-25 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Gene3D G3DSA:3.40.50.980 267 427 4.2E-39 T 29-03-2018 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 51.996 T 29-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Gene3D G3DSA:3.30.300.30 518 650 6.0E-26 T 29-03-2018 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 2.9E-22 T 29-03-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 SUPERFAMILY SSF56801 17 642 1.28E-183 T 29-03-2018 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Gene3D G3DSA:2.30.38.10 428 515 8.0E-11 T 29-03-2018 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 Gene3D G3DSA:3.40.50.980 74 266 3.2E-53 T 29-03-2018 Y880_RS01205 f925e89b92c5135c43769afc4810874e 651 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 643 0.0 T 29-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y880_RS09705 68968c322e52fb57cc246f8aaa12c7a5 214 SUPERFAMILY SSF47616 81 211 8.1E-27 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS09705 68968c322e52fb57cc246f8aaa12c7a5 214 Gene3D G3DSA:1.20.1050.10 96 213 4.1E-21 T 29-03-2018 Y880_RS09705 68968c322e52fb57cc246f8aaa12c7a5 214 SUPERFAMILY SSF52833 1 90 1.17E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS09705 68968c322e52fb57cc246f8aaa12c7a5 214 Gene3D G3DSA:3.40.30.10 1 95 2.4E-25 T 29-03-2018 Y880_RS09705 68968c322e52fb57cc246f8aaa12c7a5 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 80 2.1E-13 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS09705 68968c322e52fb57cc246f8aaa12c7a5 214 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 211 1.3E-87 T 29-03-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-71182 Y880_RS22320 0fc4f1cf0a34ed8f04cb6c9bbb28ae2b 134 Gene3D G3DSA:1.10.10.10 3 89 2.1E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22320 0fc4f1cf0a34ed8f04cb6c9bbb28ae2b 134 Pfam PF01475 Ferric uptake regulator family 9 129 1.4E-45 T 29-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Y880_RS22320 0fc4f1cf0a34ed8f04cb6c9bbb28ae2b 134 SUPERFAMILY SSF46785 6 131 4.89E-41 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00540 a3153cf4031a6a1a649bec200d9efa8b 212 Gene3D G3DSA:3.40.50.360 1 212 7.7E-41 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS00540 a3153cf4031a6a1a649bec200d9efa8b 212 Pfam PF02525 Flavodoxin-like fold 3 207 1.1E-44 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS00540 a3153cf4031a6a1a649bec200d9efa8b 212 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 209 29.369 T 29-03-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 Y880_RS00540 a3153cf4031a6a1a649bec200d9efa8b 212 SUPERFAMILY SSF52218 1 210 2.97E-49 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 297 311 7.9E-36 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 156 178 7.9E-36 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 331 344 7.9E-36 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 179 192 7.9E-36 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 221 231 7.9E-36 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:3.40.50.720 398 476 4.6E-5 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 SUPERFAMILY SSF51971 153 406 2.0E-70 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:3.50.50.60 322 397 6.6E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:3.50.50.60 246 321 4.9E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 SUPERFAMILY SSF46548 15 165 9.94E-39 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:1.10.1060.10 6 151 3.9E-38 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:3.40.50.720 152 245 1.0E-16 T 29-03-2018 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 32 142 6.5E-38 T 29-03-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 156 464 4.6E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS23730 9dc9a8a68d4f1bf148ea0b06cf94b147 477 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 14 477 5.7E-238 T 29-03-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 Y880_RS21930 e29f81b2ebd405bdb8b0df151ad24f78 202 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 1 195 20.065 T 29-03-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 Y880_RS21930 e29f81b2ebd405bdb8b0df151ad24f78 202 Pfam PF01794 Ferric reductase like transmembrane component 43 154 1.2E-16 T 29-03-2018 IPR013130 Ferric reductase transmembrane component-like domain Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 SUPERFAMILY SSF52540 3 243 2.18E-88 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 Gene3D G3DSA:3.40.50.300 1 274 9.1E-80 T 29-03-2018 Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 SUPERFAMILY SSF50331 235 324 7.37E-8 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 6.5E-121 T 29-03-2018 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 Pfam PF12857 TOBE-like domain 270 321 1.0E-11 T 29-03-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 Pfam PF00005 ABC transporter 18 164 5.4E-38 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS28025 51811d6172f24c50ea8a31660cd5660a 329 SMART SM00382 27 214 2.9E-20 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS05425 57cf38bdc8fb2666c21e763184a3f6c0 153 ProSitePatterns PS00550 Hemerythrin family signature. 57 80 - T 29-03-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Y880_RS05425 57cf38bdc8fb2666c21e763184a3f6c0 153 SUPERFAMILY SSF47188 1 125 3.01E-32 T 29-03-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Y880_RS05425 57cf38bdc8fb2666c21e763184a3f6c0 153 Gene3D G3DSA:1.20.120.50 1 127 1.1E-34 T 29-03-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Y880_RS05425 57cf38bdc8fb2666c21e763184a3f6c0 153 Pfam PF01814 Hemerythrin HHE cation binding domain 13 125 1.6E-13 T 29-03-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Y880_RS05425 57cf38bdc8fb2666c21e763184a3f6c0 153 Hamap MF_00556 Bacteriohemerythrin. 3 125 24.869 T 29-03-2018 IPR023504 Bacteriohemerythrin-like protein Y880_RS05425 57cf38bdc8fb2666c21e763184a3f6c0 153 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 125 1.4E-35 T 29-03-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Y880_RS10230 6c48fcc8b4571780d112da8d59878ad9 122 SUPERFAMILY SSF49785 2 122 1.96E-64 T 29-03-2018 IPR008979 Galactose-binding domain-like Y880_RS10230 6c48fcc8b4571780d112da8d59878ad9 122 PIRSF PIRSF020485 1 122 4.7E-74 T 29-03-2018 IPR012905 PA-IL-like Y880_RS10230 6c48fcc8b4571780d112da8d59878ad9 122 Pfam PF07828 PA-IL-like protein 2 122 1.3E-71 T 29-03-2018 IPR012905 PA-IL-like Y880_RS10230 6c48fcc8b4571780d112da8d59878ad9 122 Gene3D G3DSA:2.60.120.430 4 120 1.4E-22 T 29-03-2018 Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 Pfam PF03466 LysR substrate binding domain 102 294 3.6E-18 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 4.2E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 Gene3D G3DSA:3.40.190.10 98 306 7.6E-17 T 29-03-2018 Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 SUPERFAMILY SSF46785 11 92 9.42E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 Gene3D G3DSA:1.10.10.10 5 97 6.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03960 b2ea8b284e96020cb6e415522ef2a449 306 SUPERFAMILY SSF53850 97 301 5.97E-31 T 29-03-2018 Y880_RS01540 01b9c7502b996503e0a6b57c41545812 234 Gene3D G3DSA:1.10.8.60 168 233 6.8E-13 T 29-03-2018 Y880_RS01540 01b9c7502b996503e0a6b57c41545812 234 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 5 232 9.4E-90 T 29-03-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 Y880_RS01540 01b9c7502b996503e0a6b57c41545812 234 Gene3D G3DSA:3.40.50.300 43 165 1.5E-11 T 29-03-2018 Y880_RS01540 01b9c7502b996503e0a6b57c41545812 234 SUPERFAMILY SSF52540 14 213 9.68E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS01540 01b9c7502b996503e0a6b57c41545812 234 Pfam PF00308 Bacterial dnaA protein 14 212 8.7E-20 T 29-03-2018 IPR013317 Chromosomal replication initiator protein DnaA Y880_RS25140 195e112a0919ac55fe2a7536e144198a 114 Pfam PF07027 Protein of unknown function (DUF1318) 28 114 2.3E-26 T 29-03-2018 IPR008309 Uncharacterised conserved protein UCP025560 Y880_RS25140 195e112a0919ac55fe2a7536e144198a 114 PIRSF PIRSF025560 2 114 5.6E-31 T 29-03-2018 IPR008309 Uncharacterised conserved protein UCP025560 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 Pfam PF07687 Peptidase dimerisation domain 187 280 2.5E-8 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 Pfam PF01546 Peptidase family M20/M25/M40 75 385 6.7E-35 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 SUPERFAMILY SSF53187 6 199 4.4E-90 T 29-03-2018 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 SUPERFAMILY SSF53187 300 388 4.4E-90 T 29-03-2018 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 376 9.7E-108 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 Gene3D G3DSA:3.40.630.10 257 389 6.0E-24 T 29-03-2018 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 Gene3D G3DSA:3.40.630.10 1 256 1.9E-54 T 29-03-2018 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 PIRSF PIRSF005962 3 389 1.1E-125 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 Y880_RS12585 1ff473ffba05651418d92b7a67091077 389 SUPERFAMILY SSF55031 186 293 3.53E-29 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain Y880_RS00845 d6934dbb05d802386dcacbc6db48ab01 353 SUPERFAMILY SSF116734 183 352 3.92E-28 T 29-03-2018 Y880_RS00845 d6934dbb05d802386dcacbc6db48ab01 353 SUPERFAMILY SSF116734 4 179 2.13E-21 T 29-03-2018 Y880_RS00845 d6934dbb05d802386dcacbc6db48ab01 353 Pfam PF01420 Type I restriction modification DNA specificity domain 28 160 9.9E-12 T 29-03-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Y880_RS00845 d6934dbb05d802386dcacbc6db48ab01 353 Pfam PF01420 Type I restriction modification DNA specificity domain 181 313 7.1E-8 T 29-03-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Y880_RS00845 d6934dbb05d802386dcacbc6db48ab01 353 Gene3D G3DSA:3.90.220.20 2 156 2.5E-11 T 29-03-2018 Y880_RS00845 d6934dbb05d802386dcacbc6db48ab01 353 Gene3D G3DSA:3.90.220.20 157 329 1.4E-17 T 29-03-2018 Y880_RS24510 fe30c157ead0170567a83653e93f6ef7 71 SUPERFAMILY SSF117130 3 67 1.2E-8 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Y880_RS24510 fe30c157ead0170567a83653e93f6ef7 71 Pfam PF02599 Global regulator protein family 4 67 1.7E-10 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Y880_RS14995 a679dc376c171eebea1fb21f8aaea554 366 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 350 1.0E-161 T 29-03-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 Y880_RS14995 a679dc376c171eebea1fb21f8aaea554 366 PIRSF PIRSF007313 1 361 7.0E-157 T 29-03-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 Y880_RS16370 0cc3404681b7140224d397a089511073 378 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 374 2.1E-127 T 29-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 Y880_RS16370 0cc3404681b7140224d397a089511073 378 Gene3D G3DSA:3.40.50.2000 182 373 8.6E-17 T 29-03-2018 Y880_RS16370 0cc3404681b7140224d397a089511073 378 SUPERFAMILY SSF53756 6 375 1.54E-38 T 29-03-2018 Y880_RS16370 0cc3404681b7140224d397a089511073 378 Pfam PF02684 Lipid-A-disaccharide synthetase 7 360 3.0E-121 T 29-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 Y880_RS16370 0cc3404681b7140224d397a089511073 378 Gene3D G3DSA:3.40.50.2000 1 181 5.2E-10 T 29-03-2018 Y880_RS16370 0cc3404681b7140224d397a089511073 378 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 4 376 44.081 T 29-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 Gene3D G3DSA:3.40.710.10 242 766 6.8E-126 T 29-03-2018 Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 SUPERFAMILY SSF56601 418 606 3.3E-130 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 SUPERFAMILY SSF56601 211 233 3.3E-130 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 SUPERFAMILY SSF56601 658 802 3.3E-130 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 SUPERFAMILY SSF56601 262 313 3.3E-130 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 Pfam PF00905 Penicillin binding protein transpeptidase domain 649 742 3.9E-6 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 Pfam PF00905 Penicillin binding protein transpeptidase domain 428 604 6.4E-24 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 Pfam PF17092 Penicillin-binding protein OB-like domain 316 421 3.6E-25 T 29-03-2018 IPR031376 Penicillin-binding protein, OB-like domain Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 SUPERFAMILY SSF53955 43 255 1.01E-77 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 Pfam PF00912 Transglycosylase 55 229 3.9E-65 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 Gene3D G3DSA:1.10.3810.10 48 241 1.7E-78 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS23780 706dca7ec4780f3df8cf1aab7684a805 823 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 752 6.6E-188 T 29-03-2018 Y880_RS19105 cd4e037240322870f40e10ba9789729c 142 Pfam PF02082 Transcriptional regulator 1 81 8.8E-23 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type Y880_RS19105 cd4e037240322870f40e10ba9789729c 142 Gene3D G3DSA:1.10.10.10 1 141 3.0E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19105 cd4e037240322870f40e10ba9789729c 142 SUPERFAMILY SSF46785 5 131 7.02E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 Gene3D G3DSA:3.30.1330.60 70 257 5.4E-45 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 SUPERFAMILY SSF103088 137 246 2.62E-39 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 Pfam PF14346 Domain of unknown function (DUF4398) 14 113 2.4E-14 T 29-03-2018 IPR025511 Domain of unknown function DUF4398 Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 PRINTS PR01021 OMPA domain signature 191 207 1.3E-16 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 PRINTS PR01021 OMPA domain signature 146 168 1.3E-16 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 PRINTS PR01021 OMPA domain signature 176 191 1.3E-16 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 Pfam PF00691 OmpA family 145 240 1.1E-24 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS16615 c7334f30fe12aef19c01ffca434295a5 261 ProSitePatterns PS01068 OmpA-like domain. 178 222 - T 29-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 Pfam PF00005 ABC transporter 18 184 7.2E-18 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 Pfam PF00005 ABC transporter 336 465 1.4E-20 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 Gene3D G3DSA:3.40.50.300 2 282 2.3E-49 T 29-03-2018 Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 SMART SM00382 344 511 9.2E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 SMART SM00382 26 245 2.4E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 SUPERFAMILY SSF52540 297 526 2.06E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 Gene3D G3DSA:3.40.50.300 283 528 7.0E-49 T 29-03-2018 Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 SUPERFAMILY SSF52540 6 237 7.93E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS06975 f700d94bb9faec3b04df0bcb0e13c43e 529 Pfam PF12848 ABC transporter 224 308 6.0E-21 T 29-03-2018 IPR032781 ABC-transporter extension domain Y880_RS10935 b0c2e3dd99eca6b60bacf7fdaf160bb2 529 Gene3D G3DSA:1.20.1250.20 216 407 6.9E-17 T 29-03-2018 Y880_RS10935 b0c2e3dd99eca6b60bacf7fdaf160bb2 529 Gene3D G3DSA:3.30.70.100 418 515 3.7E-8 T 29-03-2018 Y880_RS10935 b0c2e3dd99eca6b60bacf7fdaf160bb2 529 SUPERFAMILY SSF103473 15 399 1.7E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS10935 b0c2e3dd99eca6b60bacf7fdaf160bb2 529 Pfam PF05977 Transmembrane secretion effector 6 523 4.7E-220 T 29-03-2018 IPR010290 Transmembrane secretion effector Y880_RS10935 b0c2e3dd99eca6b60bacf7fdaf160bb2 529 Gene3D G3DSA:1.20.1250.20 4 199 1.2E-21 T 29-03-2018 Y880_RS05345 95589ea6cd5599abf5c55e4c0655afec 491 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 17 489 5.3E-217 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS05345 95589ea6cd5599abf5c55e4c0655afec 491 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 65 489 1.8E-182 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS09330 92b6505ff873b8f2133a11d8fbbe3446 284 SUPERFAMILY SSF56436 36 283 1.11E-64 T 29-03-2018 IPR016187 C-type lectin fold Y880_RS09330 92b6505ff873b8f2133a11d8fbbe3446 284 Gene3D G3DSA:3.90.1580.10 22 284 1.4E-61 T 29-03-2018 Y880_RS09330 92b6505ff873b8f2133a11d8fbbe3446 284 Pfam PF03781 Sulfatase-modifying factor enzyme 1 37 282 3.8E-68 T 29-03-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Y880_RS09495 4c79e3b2bc135246348640016f16a919 304 PIRSF PIRSF028756 12 304 1.3E-138 T 29-03-2018 IPR016898 Polyphosphate kinase 2 Y880_RS09495 4c79e3b2bc135246348640016f16a919 304 SUPERFAMILY SSF52540 80 268 1.45E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS09495 4c79e3b2bc135246348640016f16a919 304 Gene3D G3DSA:3.40.50.300 5 294 1.7E-115 T 29-03-2018 Y880_RS09495 4c79e3b2bc135246348640016f16a919 304 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 49 274 6.6E-117 T 29-03-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 Y880_RS09495 4c79e3b2bc135246348640016f16a919 304 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 49 274 7.3E-117 T 29-03-2018 IPR022488 Polyphosphate kinase-2-related Y880_RS26910 6d9d28f719c1ce00ebf6272ed2bc9d53 77 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 1 74 3.0E-29 T 29-03-2018 IPR010595 Protein of unknown function DUF1161 Y880_RS26910 6d9d28f719c1ce00ebf6272ed2bc9d53 77 Pfam PF06649 Protein of unknown function (DUF1161) 24 74 8.9E-25 T 29-03-2018 IPR010595 Protein of unknown function DUF1161 Y880_RS20600 beaff7eaa9639a33ed04ece7c9ebd587 190 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 10 186 2.2E-52 T 29-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 Y880_RS20600 beaff7eaa9639a33ed04ece7c9ebd587 190 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 14 188 6.4E-52 T 29-03-2018 IPR010664 Lipopolysaccharide assembly, LptC-related Y880_RS20600 beaff7eaa9639a33ed04ece7c9ebd587 190 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 5 190 25.906 T 29-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 Y880_RS20600 beaff7eaa9639a33ed04ece7c9ebd587 190 Gene3D G3DSA:2.60.450.10 91 189 1.3E-4 T 29-03-2018 Y880_RS25240 ae0b4f1c4ffddac2a8f565d36f9474d2 356 Pfam PF12833 Helix-turn-helix domain 264 340 3.9E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25240 ae0b4f1c4ffddac2a8f565d36f9474d2 356 Gene3D G3DSA:1.10.10.60 216 295 5.2E-4 T 29-03-2018 Y880_RS25240 ae0b4f1c4ffddac2a8f565d36f9474d2 356 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 291 335 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS25240 ae0b4f1c4ffddac2a8f565d36f9474d2 356 SUPERFAMILY SSF46689 292 341 6.27E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25240 ae0b4f1c4ffddac2a8f565d36f9474d2 356 SMART SM00342 257 339 5.5E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25240 ae0b4f1c4ffddac2a8f565d36f9474d2 356 Gene3D G3DSA:1.10.10.60 296 343 1.9E-11 T 29-03-2018 Y880_RS25240 ae0b4f1c4ffddac2a8f565d36f9474d2 356 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 31 214 2.6E-36 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS09665 bd6476a3dccfa0e011e2af32d39c1d8c 382 Pfam PF03929 PepSY-associated TM region 8 373 1.8E-56 T 29-03-2018 IPR005625 PepSY-associated TM protein Y880_RS06820 7070b8ee040c44145bee6eb812615a6b 170 SUPERFAMILY SSF47741 92 163 2.22E-30 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS06820 7070b8ee040c44145bee6eb812615a6b 170 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 47 55 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS06820 7070b8ee040c44145bee6eb812615a6b 170 Gene3D G3DSA:1.10.150.120 83 168 4.0E-36 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS06820 7070b8ee040c44145bee6eb812615a6b 170 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 67 3.5E-7 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS06820 7070b8ee040c44145bee6eb812615a6b 170 Gene3D G3DSA:3.10.20.30 7 82 4.3E-26 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS06820 7070b8ee040c44145bee6eb812615a6b 170 SUPERFAMILY SSF54292 9 96 5.11E-25 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS06820 7070b8ee040c44145bee6eb812615a6b 170 Pfam PF01799 [2Fe-2S] binding domain 81 153 3.7E-31 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS05050 b06725ca0e79c21277d651aabbff4f3a 163 SUPERFAMILY SSF47741 86 156 1.01E-29 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS05050 b06725ca0e79c21277d651aabbff4f3a 163 Gene3D G3DSA:3.10.20.30 1 76 3.5E-25 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS05050 b06725ca0e79c21277d651aabbff4f3a 163 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y880_RS05050 b06725ca0e79c21277d651aabbff4f3a 163 Pfam PF01799 [2Fe-2S] binding domain 75 147 2.8E-27 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS05050 b06725ca0e79c21277d651aabbff4f3a 163 Gene3D G3DSA:1.10.150.120 77 163 1.2E-32 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS05050 b06725ca0e79c21277d651aabbff4f3a 163 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 55 2.8E-6 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS05050 b06725ca0e79c21277d651aabbff4f3a 163 SUPERFAMILY SSF54292 6 90 8.78E-25 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS25905 c5f88857c998251441d7a64baa2aa033 67 Pfam PF06568 Domain of unknown function (DUF1127) 22 57 7.7E-10 T 29-03-2018 IPR009506 Protein of unknown function DUF1127 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 1.5E-56 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 1.5E-56 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.5E-56 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 1.5E-56 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 1.5E-56 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 1.5E-56 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 SMART SM01004 10 333 1.5E-238 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 Gene3D G3DSA:3.20.20.70 1 337 1.8E-148 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 331 5.8E-136 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 PIRSF PIRSF001415 3 336 5.4E-149 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 29-03-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y880_RS24820 e3ae349cedfb7debaae26e477f1ae2ff 337 SUPERFAMILY SSF51569 8 334 6.15E-141 T 29-03-2018 Y880_RS20965 bbfe392a953862f8cfd8ccbff091eb12 66 Gene3D G3DSA:3.30.50.10 2 60 4.5E-25 T 29-03-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Y880_RS20965 bbfe392a953862f8cfd8ccbff091eb12 66 Pfam PF03884 DNA gyrase inhibitor YacG 7 55 1.6E-26 T 29-03-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Y880_RS20965 bbfe392a953862f8cfd8ccbff091eb12 66 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 3 57 19.522 T 29-03-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Y880_RS20965 bbfe392a953862f8cfd8ccbff091eb12 66 SUPERFAMILY SSF57716 2 55 1.3E-21 T 29-03-2018 Y880_RS00600 abf523545fc1ca877d6109e9851d8a7e 298 SUPERFAMILY SSF51621 8 292 3.59E-100 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS00600 abf523545fc1ca877d6109e9851d8a7e 298 Gene3D G3DSA:3.20.20.60 6 298 1.6E-88 T 29-03-2018 Y880_RS00600 abf523545fc1ca877d6109e9851d8a7e 298 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 6 294 50.151 T 29-03-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 Y880_RS00600 abf523545fc1ca877d6109e9851d8a7e 298 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 9 293 9.2E-133 T 29-03-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 Y880_RS00600 abf523545fc1ca877d6109e9851d8a7e 298 ProSitePatterns PS00161 Isocitrate lyase signature. 123 128 - T 29-03-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 Y880_RS00600 abf523545fc1ca877d6109e9851d8a7e 298 Pfam PF13714 Phosphoenolpyruvate phosphomutase 20 256 7.3E-50 T 29-03-2018 Y880_RS28620 560cd28cb09762cf625b0b96927cb4f0 197 Pfam PF02325 YGGT family 110 179 1.9E-20 T 29-03-2018 IPR003425 CCB3/YggT GO:0016020 Y880_RS28620 560cd28cb09762cf625b0b96927cb4f0 197 Pfam PF02325 YGGT family 14 83 2.2E-19 T 29-03-2018 IPR003425 CCB3/YggT GO:0016020 Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 606 44.984 T 29-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 Pfam PF00920 Dehydratase family 34 603 2.1E-219 T 29-03-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 SUPERFAMILY SSF52016 419 606 1.33E-59 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 SUPERFAMILY SSF143975 3 418 2.35E-137 T 29-03-2018 Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 606 5.1E-252 T 29-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y880_RS28415 54167a1d134de0df3960476e03ccfc27 612 Gene3D G3DSA:3.40.50.2300 54 176 1.3E-5 T 29-03-2018 Y880_RS22470 2ef9a418e728003f2f9b2f39578f9177 187 Pfam PF13590 Domain of unknown function (DUF4136) 25 186 6.1E-30 T 29-03-2018 IPR025411 Domain of unknown function DUF4136 Y880_RS12680 fb2fe05223b82235c6eaaa5856894ab0 536 SUPERFAMILY SSF52025 117 239 3.79E-15 T 29-03-2018 Y880_RS12680 fb2fe05223b82235c6eaaa5856894ab0 536 Pfam PF04389 Peptidase family M28 277 489 9.3E-46 T 29-03-2018 IPR007484 Peptidase M28 Y880_RS12680 fb2fe05223b82235c6eaaa5856894ab0 536 Gene3D G3DSA:3.40.630.10 60 503 1.1E-56 T 29-03-2018 Y880_RS12680 fb2fe05223b82235c6eaaa5856894ab0 536 Pfam PF02225 PA domain 155 253 3.8E-17 T 29-03-2018 IPR003137 PA domain Y880_RS12680 fb2fe05223b82235c6eaaa5856894ab0 536 SUPERFAMILY SSF53187 261 495 1.0E-62 T 29-03-2018 Y880_RS12680 fb2fe05223b82235c6eaaa5856894ab0 536 SUPERFAMILY SSF53187 70 111 1.0E-62 T 29-03-2018 Y880_RS05270 54f21cfbc0539312f49ace7b1b700d31 202 Pfam PF01613 Flavin reductase like domain 22 165 5.0E-18 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 Y880_RS05270 54f21cfbc0539312f49ace7b1b700d31 202 Gene3D G3DSA:2.30.110.10 13 191 1.4E-44 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS05270 54f21cfbc0539312f49ace7b1b700d31 202 SMART SM00903 19 174 2.5E-15 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 Y880_RS05270 54f21cfbc0539312f49ace7b1b700d31 202 SUPERFAMILY SSF50475 2 198 1.46E-42 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS18315 995c4ea4653bb722338ab7cc684048c2 136 Pfam PF03788 LrgA family 29 122 1.7E-20 T 29-03-2018 IPR005538 LrgA/CidA family GO:0016021 Y880_RS07695 255a640e24896f6e2bb30eccfa2f77e0 152 Gene3D G3DSA:3.40.140.10 2 143 2.7E-12 T 29-03-2018 Y880_RS07695 255a640e24896f6e2bb30eccfa2f77e0 152 Pfam PF14464 Prokaryotic homologs of the JAB domain 8 121 7.5E-18 T 29-03-2018 IPR028090 JAB domain, prokaryotic Y880_RS07695 255a640e24896f6e2bb30eccfa2f77e0 152 SUPERFAMILY SSF102712 5 138 2.48E-14 T 29-03-2018 Y880_RS13475 a6e3b910c4bb5fef704f457765603566 372 Gene3D G3DSA:3.60.110.10 35 362 9.3E-27 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS13475 a6e3b910c4bb5fef704f457765603566 372 SUPERFAMILY SSF56317 62 106 2.75E-24 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS13475 a6e3b910c4bb5fef704f457765603566 372 SUPERFAMILY SSF56317 146 284 2.75E-24 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS13475 a6e3b910c4bb5fef704f457765603566 372 Pfam PF00795 Carbon-nitrogen hydrolase 160 285 1.3E-8 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS03610 0917ac4a97da383c5c72a554e9057386 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 115 4.0E-25 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS03610 0917ac4a97da383c5c72a554e9057386 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 221 2.0E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS03610 0917ac4a97da383c5c72a554e9057386 222 Gene3D G3DSA:1.10.3720.10 2 222 3.2E-40 T 29-03-2018 Y880_RS03610 0917ac4a97da383c5c72a554e9057386 222 SUPERFAMILY SSF161098 12 206 2.09E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS18770 2585532a4dc0b4ded879188730a924a8 251 Pfam PF09836 Putative DNA-binding domain 7 93 2.0E-22 T 29-03-2018 IPR018640 Putative DNA-binding domain, bacteria Y880_RS07015 881604a873e0d15e7d297c48dbb1fffc 437 Pfam PF05525 Branched-chain amino acid transport protein 7 427 6.6E-157 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 Y880_RS07015 881604a873e0d15e7d297c48dbb1fffc 437 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 4.0E-164 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 Y880_RS09600 7bf0f9e8b718d65bfacc9f0187d43f5b 580 Gene3D G3DSA:3.20.20.140 210 533 6.7E-46 T 29-03-2018 Y880_RS09600 7bf0f9e8b718d65bfacc9f0187d43f5b 580 Pfam PF07969 Amidohydrolase family 71 576 1.3E-74 T 29-03-2018 IPR013108 Amidohydrolase 3 Y880_RS09600 7bf0f9e8b718d65bfacc9f0187d43f5b 580 SUPERFAMILY SSF51338 22 83 1.05E-24 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS09600 7bf0f9e8b718d65bfacc9f0187d43f5b 580 SUPERFAMILY SSF51338 535 577 1.05E-24 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS09600 7bf0f9e8b718d65bfacc9f0187d43f5b 580 SUPERFAMILY SSF51556 82 146 4.16E-30 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS09600 7bf0f9e8b718d65bfacc9f0187d43f5b 580 SUPERFAMILY SSF51556 226 536 4.16E-30 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS09600 7bf0f9e8b718d65bfacc9f0187d43f5b 580 Gene3D G3DSA:2.30.40.10 19 141 3.7E-22 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 Gene3D G3DSA:3.40.50.1820 19 333 3.7E-76 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 150 163 1.5E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 136 149 1.5E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 106 1.5E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00412 Epoxide hydrolase signature 91 106 1.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00412 Epoxide hydrolase signature 150 163 1.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00412 Epoxide hydrolase signature 136 149 1.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00412 Epoxide hydrolase signature 71 89 1.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 PRINTS PR00412 Epoxide hydrolase signature 306 328 1.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 Pfam PF00561 alpha/beta hydrolase fold 66 317 8.5E-24 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS13280 99cd4f371fc381c550ebb012eb0b6bc3 333 SUPERFAMILY SSF53474 45 329 2.55E-62 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 8 435 36.487 T 29-03-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 Gene3D G3DSA:1.10.3860.10 6 415 8.6E-102 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 PRINTS PR00173 Glutamate-aspartate symporter signature 80 105 3.7E-29 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 PRINTS PR00173 Glutamate-aspartate symporter signature 152 174 3.7E-29 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 PRINTS PR00173 Glutamate-aspartate symporter signature 9 29 3.7E-29 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 PRINTS PR00173 Glutamate-aspartate symporter signature 334 353 3.7E-29 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 PRINTS PR00173 Glutamate-aspartate symporter signature 299 325 3.7E-29 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 PRINTS PR00173 Glutamate-aspartate symporter signature 199 218 3.7E-29 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 3.7E-29 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 302 325 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 Pfam PF00375 Sodium:dicarboxylate symporter family 16 408 2.3E-97 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS27210 32898fc771cfdaa8f90edc770d61d1c6 449 SUPERFAMILY SSF118215 16 409 1.44E-106 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS19935 fba9ab9c414ac7dcc24f8c442581b0ab 257 Gene3D G3DSA:1.10.12.10 214 248 1.6E-14 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS19935 fba9ab9c414ac7dcc24f8c442581b0ab 257 Gene3D G3DSA:3.90.226.10 4 213 2.5E-54 T 29-03-2018 Y880_RS19935 fba9ab9c414ac7dcc24f8c442581b0ab 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 254 2.2E-49 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS19935 fba9ab9c414ac7dcc24f8c442581b0ab 257 SUPERFAMILY SSF52096 1 254 6.4E-71 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS08375 9bce07328786aee1da97d740b884954b 474 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS08375 9bce07328786aee1da97d740b884954b 474 Pfam PF00171 Aldehyde dehydrogenase family 14 470 1.9E-159 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS08375 9bce07328786aee1da97d740b884954b 474 SUPERFAMILY SSF53720 2 472 7.59E-151 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS08375 9bce07328786aee1da97d740b884954b 474 Gene3D G3DSA:3.40.309.10 264 456 1.1E-68 T 29-03-2018 Y880_RS08375 9bce07328786aee1da97d740b884954b 474 Gene3D G3DSA:3.40.605.10 1 263 9.9E-88 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 SMART SM00267 170 341 8.5E-50 T 29-03-2018 IPR000160 GGDEF domain Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 SUPERFAMILY SSF55073 186 339 1.1E-44 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 Pfam PF01590 GAF domain 31 138 5.2E-11 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 Gene3D G3DSA:3.30.450.40 10 178 1.2E-22 T 29-03-2018 IPR029016 GAF domain-like Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 178 339 2.0E-45 T 29-03-2018 IPR000160 GGDEF domain Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 SMART SM00065 26 168 1.2E-9 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 Pfam PF00990 Diguanylate cyclase, GGDEF domain 182 337 4.0E-42 T 29-03-2018 IPR000160 GGDEF domain Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 SUPERFAMILY SSF55781 29 168 5.23E-26 T 29-03-2018 IPR029016 GAF domain-like Y880_RS11370 5f38d8eca4e82e8af1c219f683bc8930 341 Gene3D G3DSA:3.30.70.270 179 341 8.5E-53 T 29-03-2018 Y880_RS25950 e98ecce20a53d06292e059783825ea8b 540 SUPERFAMILY SSF53756 303 480 7.33E-20 T 29-03-2018 Y880_RS25950 e98ecce20a53d06292e059783825ea8b 540 Pfam PF13692 Glycosyl transferases group 1 376 459 2.0E-8 T 29-03-2018 Y880_RS25950 e98ecce20a53d06292e059783825ea8b 540 Gene3D G3DSA:3.40.50.2000 301 503 7.9E-25 T 29-03-2018 Y880_RS10040 1803b470a8c546927d166184d6db9261 331 Gene3D G3DSA:3.20.20.100 1 329 1.9E-111 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS10040 1803b470a8c546927d166184d6db9261 331 SUPERFAMILY SSF51430 1 312 3.27E-104 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS10040 1803b470a8c546927d166184d6db9261 331 Pfam PF00248 Aldo/keto reductase family 16 310 2.5E-81 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS12070 89b6ae09727468709fb948a87ec0193c 220 SUPERFAMILY SSF47616 78 209 2.59E-26 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS12070 89b6ae09727468709fb948a87ec0193c 220 SUPERFAMILY SSF52833 1 102 1.66E-25 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS12070 89b6ae09727468709fb948a87ec0193c 220 Pfam PF14497 Glutathione S-transferase, C-terminal domain 126 204 4.1E-13 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS12070 89b6ae09727468709fb948a87ec0193c 220 Gene3D G3DSA:3.40.30.10 1 72 1.2E-27 T 29-03-2018 Y880_RS12070 89b6ae09727468709fb948a87ec0193c 220 Gene3D G3DSA:1.20.1050.10 73 209 1.8E-25 T 29-03-2018 Y880_RS12070 89b6ae09727468709fb948a87ec0193c 220 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 79 1.4E-25 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 TIGRFAM TIGR01075 uvrD: DNA helicase II 8 726 0.0 T 29-03-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 Pfam PF13361 UvrD-like helicase C-terminal domain 279 618 1.4E-75 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 Pfam PF00580 UvrD/REP helicase N-terminal domain 12 273 6.4E-74 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 Gene3D G3DSA:3.40.50.300 285 386 1.4E-28 T 29-03-2018 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 Gene3D G3DSA:3.40.50.300 165 284 4.0E-33 T 29-03-2018 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 Gene3D G3DSA:3.40.50.300 7 153 1.7E-28 T 29-03-2018 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 Gene3D G3DSA:3.40.50.300 477 655 5.0E-50 T 29-03-2018 Y880_RS25890 438114d601c6fbd3845af92933d4668d 728 SUPERFAMILY SSF52540 9 644 1.73E-184 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS17135 2f4a3cc37fadcee1546585cc260602f5 129 Pfam PF11162 Protein of unknown function (DUF2946) 9 127 2.5E-11 T 29-03-2018 IPR021333 Protein of unknown function DUF2946 Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 SUPERFAMILY SSF52540 72 357 2.68E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 Pfam PF00271 Helicase conserved C-terminal domain 230 337 1.3E-25 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 Gene3D G3DSA:3.40.50.300 220 367 1.6E-39 T 29-03-2018 Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 Pfam PF00270 DEAD/DEAH box helicase 28 195 2.5E-47 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 SMART SM00490 256 337 1.2E-27 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 Gene3D G3DSA:3.40.50.300 9 219 4.6E-60 T 29-03-2018 Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 SMART SM00487 23 220 4.4E-59 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS28950 c60dbb85cde05626b9196ae30e1a04dd 458 Pfam PF03880 DbpA RNA binding domain 386 456 7.0E-24 T 29-03-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Y880_RS29395 b8488a3e0a217109d4c1ca882ef64e92 276 SUPERFAMILY SSF103481 38 133 9.15E-13 T 29-03-2018 Y880_RS29395 b8488a3e0a217109d4c1ca882ef64e92 276 Pfam PF00892 EamA-like transporter family 144 274 5.3E-10 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS29395 b8488a3e0a217109d4c1ca882ef64e92 276 SUPERFAMILY SSF103481 182 275 2.22E-12 T 29-03-2018 Y880_RS18365 d6c2e80b52cfeab806c9deb850ac26dd 273 Hamap MF_00601 Ethanolamine ammonia-lyase light chain [eutC]. 5 250 40.18 T 29-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y880_RS18365 d6c2e80b52cfeab806c9deb850ac26dd 273 PIRSF PIRSF018982 1 261 7.1E-107 T 29-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y880_RS18365 d6c2e80b52cfeab806c9deb850ac26dd 273 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 13 250 1.5E-94 T 29-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y880_RS14835 8d195af2fecb7e3a39d5a35e765ef717 232 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 95 231 7.8E-40 T 29-03-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Y880_RS14835 8d195af2fecb7e3a39d5a35e765ef717 232 Gene3D G3DSA:3.90.1210.10 106 170 2.9E-11 T 29-03-2018 Y880_RS14835 8d195af2fecb7e3a39d5a35e765ef717 232 Pfam PF13144 Chaperone for flagella basal body P-ring formation 32 230 6.6E-63 T 29-03-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Y880_RS14835 8d195af2fecb7e3a39d5a35e765ef717 232 SMART SM00858 107 169 1.7E-9 T 29-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 SUPERFAMILY SSF103473 6 387 1.96E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 Gene3D G3DSA:1.20.1250.20 6 199 6.6E-30 T 29-03-2018 Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 PRINTS PR01035 Tetracycline resistance protein signature 83 107 6.3E-9 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 PRINTS PR01035 Tetracycline resistance protein signature 52 71 6.3E-9 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 PRINTS PR01035 Tetracycline resistance protein signature 141 163 6.3E-9 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 PRINTS PR01035 Tetracycline resistance protein signature 248 268 6.3E-9 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 Pfam PF07690 Major Facilitator Superfamily 21 310 4.1E-35 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS26465 e1324c4c68b2043a422a80b4d0405f30 401 Gene3D G3DSA:1.20.1250.20 202 385 1.2E-13 T 29-03-2018 Y880_RS26850 78e5345d56ee83f371da22de2841e0a1 127 SUPERFAMILY SSF47413 1 65 1.75E-13 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS26850 78e5345d56ee83f371da22de2841e0a1 127 Gene3D G3DSA:1.10.10.10 28 114 2.5E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26850 78e5345d56ee83f371da22de2841e0a1 127 Gene3D G3DSA:1.10.10.60 1 27 4.3E-8 T 29-03-2018 Y880_RS26850 78e5345d56ee83f371da22de2841e0a1 127 Pfam PF01381 Helix-turn-helix 9 61 3.1E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS26850 78e5345d56ee83f371da22de2841e0a1 127 SMART SM00530 6 61 3.3E-10 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 436 510 2.2E-14 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 SUPERFAMILY SSF141868 27 260 3.14E-67 T 29-03-2018 IPR001633 EAL domain Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 Gene3D G3DSA:3.10.580.10 291 415 2.1E-11 T 29-03-2018 Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 SUPERFAMILY SSF54631 296 425 4.75E-11 T 29-03-2018 Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 Pfam PF00563 EAL domain 28 258 5.5E-56 T 29-03-2018 IPR001633 EAL domain Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 Pfam PF00571 CBS domain 297 342 2.7E-5 T 29-03-2018 IPR000644 CBS domain Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 SMART SM00052 21 263 1.4E-48 T 29-03-2018 IPR001633 EAL domain Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 Gene3D G3DSA:3.30.70.270 416 599 3.0E-27 T 29-03-2018 Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 SUPERFAMILY SSF55073 426 592 9.42E-24 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 Pfam PF00990 Diguanylate cyclase, GGDEF domain 425 523 3.2E-14 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 SMART SM00267 409 596 3.1E-7 T 29-03-2018 IPR000160 GGDEF domain Y880_RS14315 0ec6a3dbc3be1c40958a0b8c0dc8624e 601 Gene3D G3DSA:3.20.20.450 13 277 5.8E-71 T 29-03-2018 IPR001633 EAL domain Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 SUPERFAMILY SSF56235 34 563 1.14E-147 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 41 559 1.1E-108 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 251 267 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 378 396 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 402 420 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 466 483 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 443 458 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 282 301 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 135 153 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 61 86 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 153 172 6.4E-58 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS28455 c801f7de335ac5f60644fb9b727702c5 577 Pfam PF01019 Gamma-glutamyltranspeptidase 54 561 1.2E-158 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS01100 6f6d2e2a17d5df651f81c5fa8b6e598f 137 Pfam PF00472 RF-1 domain 8 132 4.4E-26 T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y880_RS01100 6f6d2e2a17d5df651f81c5fa8b6e598f 137 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y880_RS01100 6f6d2e2a17d5df651f81c5fa8b6e598f 137 SUPERFAMILY SSF75620 8 117 6.28E-13 T 29-03-2018 Y880_RS01100 6f6d2e2a17d5df651f81c5fa8b6e598f 137 Gene3D G3DSA:3.30.160.20 1 137 2.2E-41 T 29-03-2018 Y880_RS10035 d1eb79dc6956a09a3e0e729b5e6c5304 303 Gene3D G3DSA:1.10.10.10 3 83 2.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10035 d1eb79dc6956a09a3e0e729b5e6c5304 303 Gene3D G3DSA:3.40.190.10 92 177 3.2E-16 T 29-03-2018 Y880_RS10035 d1eb79dc6956a09a3e0e729b5e6c5304 303 Pfam PF03466 LysR substrate binding domain 89 293 9.0E-45 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS10035 d1eb79dc6956a09a3e0e729b5e6c5304 303 SUPERFAMILY SSF46785 4 83 1.54E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10035 d1eb79dc6956a09a3e0e729b5e6c5304 303 SUPERFAMILY SSF53850 89 297 5.25E-47 T 29-03-2018 Y880_RS10035 d1eb79dc6956a09a3e0e729b5e6c5304 303 Gene3D G3DSA:3.40.190.10 178 263 6.4E-24 T 29-03-2018 Y880_RS10035 d1eb79dc6956a09a3e0e729b5e6c5304 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.9E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 193 5.4E-4 T 29-03-2018 Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 8.2E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 8.2E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 8.2E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 8.2E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 8.2E-25 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 Pfam PF00106 short chain dehydrogenase 14 202 6.2E-57 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 SUPERFAMILY SSF51735 11 268 1.89E-68 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 1.4E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.4E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 1.4E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18030 e2505f7044ad7e1ed5bb6aaf6a7794e8 278 Gene3D G3DSA:3.40.50.720 2 274 2.8E-63 T 29-03-2018 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 29-03-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 Gene3D G3DSA:3.30.420.10 2 159 1.1E-48 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 6.2E-41 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 6.2E-41 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 6.2E-41 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 6.2E-41 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 6.2E-41 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 SUPERFAMILY SSF53098 3 156 1.74E-50 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 6.3E-68 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 155 4.0E-60 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS01635 9a32773c3b60ea9c62c6837fd87285a5 174 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 47.81 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Gene3D G3DSA:3.30.70.20 391 404 0.2 T 29-03-2018 Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Gene3D G3DSA:3.30.70.20 323 376 1.1E-10 T 29-03-2018 Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Gene3D G3DSA:3.30.70.20 377 390 0.033 T 29-03-2018 Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 SUPERFAMILY SSF54862 206 234 3.28E-33 T 29-03-2018 Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 SUPERFAMILY SSF54862 275 460 3.28E-33 T 29-03-2018 Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Gene3D G3DSA:2.60.40.10 455 572 2.8E-25 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 373 384 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Gene3D G3DSA:3.30.70.20 405 452 0.019 T 29-03-2018 Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Pfam PF13746 4Fe-4S dicluster domain 320 426 6.7E-45 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Pfam PF12801 4Fe-4S binding domain 198 227 5.5E-5 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 455 571 1.6E-27 T 29-03-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain Y880_RS18905 75398ad8f283f490eac654e0dbd0434d 573 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 142 570 2.1E-168 T 29-03-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 Y880_RS08995 30fd35d0e090d0c4b4fd23826636c0f6 285 SUPERFAMILY SSF56645 6 140 6.28E-18 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS08995 30fd35d0e090d0c4b4fd23826636c0f6 285 Gene3D G3DSA:2.40.110.10 40 131 5.3E-10 T 29-03-2018 Y880_RS08995 30fd35d0e090d0c4b4fd23826636c0f6 285 Gene3D G3DSA:1.20.140.10 132 277 0.022 T 29-03-2018 Y880_RS08490 6abafe36a7138d962bdf7a8061468f66 478 Pfam PF02397 Bacterial sugar transferase 284 472 1.3E-67 T 29-03-2018 IPR003362 Bacterial sugar transferase Y880_RS08490 6abafe36a7138d962bdf7a8061468f66 478 SUPERFAMILY SSF51735 151 267 3.46E-9 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08490 6abafe36a7138d962bdf7a8061468f66 478 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 46 478 4.0E-148 T 29-03-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 Y880_RS08490 6abafe36a7138d962bdf7a8061468f66 478 Gene3D G3DSA:3.40.50.720 150 271 1.3E-19 T 29-03-2018 Y880_RS08490 6abafe36a7138d962bdf7a8061468f66 478 Pfam PF13727 CoA-binding domain 70 248 1.1E-27 T 29-03-2018 Y880_RS08490 6abafe36a7138d962bdf7a8061468f66 478 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 34 477 1.3E-136 T 29-03-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Y880_RS14620 435bf2c8bd6046df6b5c8f11431d9c5b 151 Pfam PF00582 Universal stress protein family 1 149 1.3E-32 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS14620 435bf2c8bd6046df6b5c8f11431d9c5b 151 SUPERFAMILY SSF52402 1 150 3.89E-34 T 29-03-2018 Y880_RS14620 435bf2c8bd6046df6b5c8f11431d9c5b 151 PRINTS PR01438 Universal stress protein signature 2 20 1.4E-20 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS14620 435bf2c8bd6046df6b5c8f11431d9c5b 151 PRINTS PR01438 Universal stress protein signature 109 121 1.4E-20 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS14620 435bf2c8bd6046df6b5c8f11431d9c5b 151 PRINTS PR01438 Universal stress protein signature 127 149 1.4E-20 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS14620 435bf2c8bd6046df6b5c8f11431d9c5b 151 Gene3D G3DSA:3.40.50.620 1 151 2.1E-32 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS01815 536e991b24dfdb64bc3a2e11390d4714 157 SUPERFAMILY SSF52833 3 154 4.56E-51 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS01815 536e991b24dfdb64bc3a2e11390d4714 157 PIRSF PIRSF000239 1 155 8.3E-29 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS01815 536e991b24dfdb64bc3a2e11390d4714 157 Gene3D G3DSA:3.40.30.10 1 156 2.2E-36 T 29-03-2018 Y880_RS01815 536e991b24dfdb64bc3a2e11390d4714 157 Pfam PF00578 AhpC/TSA family 5 133 3.5E-36 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS15875 88a3326f25027043d59e8cb7c28f413c 481 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1 468 3.2E-233 T 29-03-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y880_RS15875 88a3326f25027043d59e8cb7c28f413c 481 SUPERFAMILY SSF53448 1 281 8.56E-69 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS15875 88a3326f25027043d59e8cb7c28f413c 481 SUPERFAMILY SSF51182 184 469 4.67E-88 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS15875 88a3326f25027043d59e8cb7c28f413c 481 Gene3D G3DSA:2.60.120.10 337 446 1.6E-31 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS15875 88a3326f25027043d59e8cb7c28f413c 481 Pfam PF01050 Mannose-6-phosphate isomerase 314 464 6.7E-77 T 29-03-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y880_RS15875 88a3326f25027043d59e8cb7c28f413c 481 Gene3D G3DSA:3.90.550.10 1 336 2.5E-93 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS15875 88a3326f25027043d59e8cb7c28f413c 481 Pfam PF00483 Nucleotidyl transferase 3 286 6.0E-77 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y880_RS10145 84efd865734107b808897b23407199fd 555 Gene3D G3DSA:3.40.50.980 27 199 4.7E-39 T 29-03-2018 Y880_RS10145 84efd865734107b808897b23407199fd 555 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 530 1.2E-23 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS10145 84efd865734107b808897b23407199fd 555 SUPERFAMILY SSF56801 28 543 7.46E-141 T 29-03-2018 Y880_RS10145 84efd865734107b808897b23407199fd 555 Pfam PF00501 AMP-binding enzyme 40 443 6.8E-75 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS10145 84efd865734107b808897b23407199fd 555 ProSitePatterns PS00455 Putative AMP-binding domain signature. 194 205 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS10145 84efd865734107b808897b23407199fd 555 Gene3D G3DSA:3.30.300.30 439 555 1.8E-30 T 29-03-2018 Y880_RS10145 84efd865734107b808897b23407199fd 555 Gene3D G3DSA:2.30.38.10 352 436 3.2E-10 T 29-03-2018 Y880_RS10145 84efd865734107b808897b23407199fd 555 Gene3D G3DSA:3.40.50.980 200 351 7.1E-38 T 29-03-2018 Y880_RS21370 57648571effecb826468a75fad8e8778 67 Gene3D G3DSA:4.10.1050.10 6 51 7.6E-4 T 29-03-2018 Y880_RS21370 57648571effecb826468a75fad8e8778 67 Pfam PF04328 Selenoprotein, putative 5 67 2.4E-30 T 29-03-2018 IPR007423 Selenoprotein, putative Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 Pfam PF04030 D-arabinono-1,4-lactone oxidase 186 436 4.4E-68 T 29-03-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 Gene3D G3DSA:3.30.43.10 12 80 3.1E-11 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 PIRSF PIRSF000136 11 441 1.2E-89 T 29-03-2018 IPR010031 L-gulonolactone/D-arabinono-1,4-lactone oxidase GO:0016899|GO:0055114 Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 Gene3D G3DSA:3.40.462.10 196 406 3.1E-21 T 29-03-2018 IPR016170 Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 SUPERFAMILY SSF56176 15 189 1.21E-40 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 Gene3D G3DSA:3.30.465.10 81 195 1.9E-20 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 Pfam PF01565 FAD binding domain 36 161 2.2E-22 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y880_RS25255 a340be50819676ec9d3016a767f26f54 442 TIGRFAM TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase 19 440 1.3E-140 T 29-03-2018 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 SMART SM01240 7 475 0.0 T 29-03-2018 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 29-03-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 SUPERFAMILY SSF54631 94 202 7.07E-26 T 29-03-2018 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 SUPERFAMILY SSF51412 216 479 3.53E-127 T 29-03-2018 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 SUPERFAMILY SSF51412 2 90 3.53E-127 T 29-03-2018 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 475 1.1E-164 T 29-03-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 488 83.898 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 PIRSF PIRSF000130 1 489 2.7E-203 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 Gene3D G3DSA:3.20.20.70 1 486 1.3E-120 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 456 9.5E-191 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 SMART SM00116 157 205 6.7E-4 T 29-03-2018 IPR000644 CBS domain Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 SMART SM00116 96 143 7.1E-11 T 29-03-2018 IPR000644 CBS domain Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 Pfam PF00571 CBS domain 95 139 3.4E-10 T 29-03-2018 IPR000644 CBS domain Y880_RS17050 9a682aef3e301f9476152cddaa253426 489 Pfam PF00571 CBS domain 148 200 1.3E-5 T 29-03-2018 IPR000644 CBS domain Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 Gene3D G3DSA:3.40.50.10860 1 137 3.8E-45 T 29-03-2018 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 214 290 1.0E-8 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 SMART SM00839 138 339 1.9E-66 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 PIRSF PIRSF000188 1 341 9.9E-142 T 29-03-2018 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 64 78 2.0E-11 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 280 291 2.0E-11 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 170 190 2.0E-11 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 SUPERFAMILY SSF51735 138 335 4.33E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 SUPERFAMILY SSF53223 2 134 7.68E-41 T 29-03-2018 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 23 129 5.9E-22 T 29-03-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS15205 57dada7d741f4d4a5e5d7f1f047aad74 341 Gene3D G3DSA:3.40.50.720 138 330 5.5E-33 T 29-03-2018 Y880_RS26390 5e8120becc8d6b3be41c5f59cbe08a4f 186 SUPERFAMILY SSF51161 8 139 1.52E-31 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS26390 5e8120becc8d6b3be41c5f59cbe08a4f 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 44 4.6E-4 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS26390 5e8120becc8d6b3be41c5f59cbe08a4f 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 79 111 1.9E-6 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS26390 5e8120becc8d6b3be41c5f59cbe08a4f 186 Gene3D G3DSA:2.160.10.10 9 180 1.6E-33 T 29-03-2018 Y880_RS24830 da240b3e0c5d9583556f997737eb00e3 222 PIRSF PIRSF006320 2 217 3.1E-108 T 29-03-2018 IPR026041 Glyoxalase ElbB Y880_RS24830 da240b3e0c5d9583556f997737eb00e3 222 SUPERFAMILY SSF52317 3 217 1.36E-66 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS24830 da240b3e0c5d9583556f997737eb00e3 222 Gene3D G3DSA:3.40.50.880 1 222 2.7E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS24830 da240b3e0c5d9583556f997737eb00e3 222 Pfam PF01965 DJ-1/PfpI family 16 190 2.5E-9 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 Gene3D G3DSA:2.40.50.100 67 278 1.6E-17 T 29-03-2018 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 Pfam PF13437 HlyD family secretion protein 249 356 5.8E-17 T 29-03-2018 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 Pfam PF13533 Biotin-lipoyl like 67 109 3.3E-6 T 29-03-2018 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 379 395 2.6E-39 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 34 57 2.6E-39 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 294 318 2.6E-39 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 2.6E-39 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 379 2.6E-39 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 318 341 2.6E-39 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS06535 6c7f2eedf40899c2219d1be9d50cc0ed 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 261 282 2.6E-39 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y880_RS07330 954356aef494e6e05be8ea071fec3b86 224 SUPERFAMILY SSF53335 7 221 1.66E-30 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS07330 954356aef494e6e05be8ea071fec3b86 224 Pfam PF13649 Methyltransferase domain 45 140 6.4E-13 T 29-03-2018 Y880_RS07330 954356aef494e6e05be8ea071fec3b86 224 Gene3D G3DSA:3.40.50.150 3 224 1.6E-28 T 29-03-2018 Y880_RS03300 f8e476ee69b1b64fdb85a60ae500922d 151 Pfam PF02654 Cobalamin-5-phosphate synthase 11 150 2.2E-36 T 29-03-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Y880_RS03300 f8e476ee69b1b64fdb85a60ae500922d 151 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 151 34.036 T 29-03-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Y880_RS06575 a99e118b45588abb1aa49e4c870b4d60 177 Pfam PF00583 Acetyltransferase (GNAT) family 59 146 4.2E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS06575 a99e118b45588abb1aa49e4c870b4d60 177 SUPERFAMILY SSF55729 5 173 1.44E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS06575 a99e118b45588abb1aa49e4c870b4d60 177 Gene3D G3DSA:3.40.630.30 1 177 1.7E-32 T 29-03-2018 Y880_RS11225 0e0d27fc777843f56812e815ea0c9e0f 172 SMART SM00318 24 160 2.6E-4 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Y880_RS11225 0e0d27fc777843f56812e815ea0c9e0f 172 SUPERFAMILY SSF50199 24 165 7.59E-16 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Y880_RS11225 0e0d27fc777843f56812e815ea0c9e0f 172 Gene3D G3DSA:2.40.50.90 17 166 1.6E-17 T 29-03-2018 IPR035437 Staphylococcal nuclease (SNase-like), OB-fold/extended TUDOR domain Y880_RS11225 0e0d27fc777843f56812e815ea0c9e0f 172 Pfam PF00565 Staphylococcal nuclease homologue 61 159 1.4E-6 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Y880_RS25385 a1aca302b5f933199199a3ca0f30be5b 133 Pfam PF03928 Haem-degrading 10 129 1.7E-29 T 29-03-2018 IPR005624 Haem-degrading Y880_RS25385 a1aca302b5f933199199a3ca0f30be5b 133 SUPERFAMILY SSF143744 2 131 2.75E-34 T 29-03-2018 Y880_RS25165 48c74983c65997655a527be4402ab837 529 Gene3D G3DSA:3.30.870.10 35 246 3.5E-32 T 29-03-2018 Y880_RS25165 48c74983c65997655a527be4402ab837 529 Gene3D G3DSA:3.30.870.10 322 473 1.4E-22 T 29-03-2018 Y880_RS25165 48c74983c65997655a527be4402ab837 529 SMART SM00155 417 444 3.8E-5 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS25165 48c74983c65997655a527be4402ab837 529 SMART SM00155 172 199 1.0E-4 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS25165 48c74983c65997655a527be4402ab837 529 Pfam PF13091 PLD-like domain 80 231 1.4E-20 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS25165 48c74983c65997655a527be4402ab837 529 Pfam PF13091 PLD-like domain 328 466 5.2E-20 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS25165 48c74983c65997655a527be4402ab837 529 SUPERFAMILY SSF56024 50 251 2.04E-42 T 29-03-2018 Y880_RS25165 48c74983c65997655a527be4402ab837 529 SUPERFAMILY SSF56024 284 508 1.26E-31 T 29-03-2018 Y880_RS11255 e85f14787e089b35cccddb2c9b35a6f5 124 Pfam PF16703 Domain of unknown function (DUF5064) 1 115 5.4E-46 T 29-03-2018 IPR032024 Protein of unknown function DUF5064 Y880_RS16470 1ee856bf134ad7d102a8258e65999fc8 117 PIRSF PIRSF029611 1 117 3.6E-71 T 29-03-2018 IPR016928 Uncharacterised conserved protein UCP029611 Y880_RS16470 1ee856bf134ad7d102a8258e65999fc8 117 Pfam PF03692 Putative zinc- or iron-chelating domain 20 81 4.3E-10 T 29-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y880_RS01090 f1d8a9eea06bc62e6183c693e27ecff5 472 PIRSF PIRSF006060 1 469 2.4E-75 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS01090 f1d8a9eea06bc62e6183c693e27ecff5 472 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS01090 f1d8a9eea06bc62e6183c693e27ecff5 472 Pfam PF00324 Amino acid permease 19 453 2.1E-114 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS06840 c5a0d91d5ed38408fa6152dbbbc9412c 542 Gene3D G3DSA:3.40.50.300 2 294 3.7E-9 T 29-03-2018 Y880_RS06840 c5a0d91d5ed38408fa6152dbbbc9412c 542 Pfam PF10088 Uncharacterised protein conserved in bacteria (DUF2326) 416 527 4.1E-14 T 29-03-2018 IPR018760 Protein of unknown function DUF2326 Y880_RS06840 c5a0d91d5ed38408fa6152dbbbc9412c 542 Pfam PF13476 AAA domain 10 268 2.2E-8 T 29-03-2018 Y880_RS20145 50e82f4295eaf3919f5dd79b25898975 473 SUPERFAMILY SSF46626 330 473 3.58E-26 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS20145 50e82f4295eaf3919f5dd79b25898975 473 PIRSF PIRSF028099 3 473 3.9E-191 T 29-03-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase Y880_RS20145 50e82f4295eaf3919f5dd79b25898975 473 Gene3D G3DSA:1.10.760.10 311 473 3.2E-27 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS20145 50e82f4295eaf3919f5dd79b25898975 473 Gene3D G3DSA:1.10.760.10 75 296 0.027 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS20145 50e82f4295eaf3919f5dd79b25898975 473 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 36 473 4.3E-141 T 29-03-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase Y880_RS22325 a67dec62ebdc963ba95977169ef7f3c8 176 Pfam PF04355 SmpA / OmlA family 35 101 1.9E-25 T 29-03-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Y880_RS22325 a67dec62ebdc963ba95977169ef7f3c8 176 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 6 147 45.134 T 29-03-2018 IPR026592 Outer membrane protein assembly factor BamE Y880_RS22325 a67dec62ebdc963ba95977169ef7f3c8 176 Gene3D G3DSA:3.30.1450.10 35 103 6.8E-13 T 29-03-2018 Y880_RS28220 2d5433120a2623181cf2f8b162f83f2d 464 SUPERFAMILY SSF55103 222 463 1.54E-60 T 29-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y880_RS28220 2d5433120a2623181cf2f8b162f83f2d 464 Pfam PF01565 FAD binding domain 41 179 2.2E-37 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y880_RS28220 2d5433120a2623181cf2f8b162f83f2d 464 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 461 8.3E-66 T 29-03-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y880_RS28220 2d5433120a2623181cf2f8b162f83f2d 464 Gene3D G3DSA:3.30.465.10 94 236 1.1E-38 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Y880_RS28220 2d5433120a2623181cf2f8b162f83f2d 464 SUPERFAMILY SSF56176 4 217 1.26E-65 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Y880_RS28220 2d5433120a2623181cf2f8b162f83f2d 464 Gene3D G3DSA:1.10.45.10 422 461 2.4E-16 T 29-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y880_RS28220 2d5433120a2623181cf2f8b162f83f2d 464 Gene3D G3DSA:3.30.43.10 1 93 5.4E-24 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Y880_RS21985 6e76954f8f69b128c04643028582135b 115 PIRSF PIRSF029688 1 115 8.5E-72 T 29-03-2018 IPR016933 Pentapeptide repeat-containing uncharacterised conserved protein UCP029688 Y880_RS21985 6e76954f8f69b128c04643028582135b 115 Pfam PF00805 Pentapeptide repeats (8 copies) 54 90 7.2E-10 T 29-03-2018 IPR001646 Pentapeptide repeat Y880_RS21985 6e76954f8f69b128c04643028582135b 115 Gene3D G3DSA:2.160.10.20 30 102 1.2E-13 T 29-03-2018 Y880_RS21985 6e76954f8f69b128c04643028582135b 115 SUPERFAMILY SSF141571 34 91 6.93E-12 T 29-03-2018 Y880_RS16270 1c5739dcc0f8cf27074984e8386df662 297 SMART SM00257 68 112 1.9E-11 T 29-03-2018 IPR018392 LysM domain Y880_RS16270 1c5739dcc0f8cf27074984e8386df662 297 Gene3D G3DSA:3.10.350.10 52 167 5.0E-15 T 29-03-2018 Y880_RS16270 1c5739dcc0f8cf27074984e8386df662 297 Pfam PF01476 LysM domain 69 109 2.6E-13 T 29-03-2018 IPR018392 LysM domain Y880_RS16270 1c5739dcc0f8cf27074984e8386df662 297 Pfam PF01551 Peptidase family M23 197 290 3.0E-30 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS16270 1c5739dcc0f8cf27074984e8386df662 297 SUPERFAMILY SSF51261 68 294 8.89E-53 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS16270 1c5739dcc0f8cf27074984e8386df662 297 Gene3D G3DSA:2.70.70.10 168 297 1.9E-35 T 29-03-2018 Y880_RS08195 b4e6097dbdc6252cc37b8178f06a0376 345 SMART SM00829 22 339 2.5E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS08195 b4e6097dbdc6252cc37b8178f06a0376 345 Gene3D G3DSA:3.90.180.10 2 151 8.4E-37 T 29-03-2018 Y880_RS08195 b4e6097dbdc6252cc37b8178f06a0376 345 Gene3D G3DSA:3.40.50.720 152 282 1.1E-28 T 29-03-2018 Y880_RS08195 b4e6097dbdc6252cc37b8178f06a0376 345 SUPERFAMILY SSF51735 127 305 1.63E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS08195 b4e6097dbdc6252cc37b8178f06a0376 345 Pfam PF16884 N-terminal domain of oxidoreductase 9 115 1.6E-42 T 29-03-2018 Y880_RS08195 b4e6097dbdc6252cc37b8178f06a0376 345 SUPERFAMILY SSF50129 7 147 4.72E-47 T 29-03-2018 IPR011032 GroES-like Y880_RS08195 b4e6097dbdc6252cc37b8178f06a0376 345 Pfam PF00107 Zinc-binding dehydrogenase 161 300 5.7E-18 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS14850 f2a6076aa6d459dfdbc17a7ad8fb9bd1 263 Pfam PF07238 PilZ domain 138 249 1.6E-8 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS14850 f2a6076aa6d459dfdbc17a7ad8fb9bd1 263 Gene3D G3DSA:2.40.10.220 136 262 1.1E-16 T 29-03-2018 Y880_RS14850 f2a6076aa6d459dfdbc17a7ad8fb9bd1 263 Gene3D G3DSA:2.30.110.10 30 135 6.4E-35 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS14850 f2a6076aa6d459dfdbc17a7ad8fb9bd1 263 Pfam PF07317 Flagellar regulator YcgR 31 135 7.2E-26 T 29-03-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal Y880_RS22810 a019aa9ad33088eb6db607ed9a113cb1 529 Gene3D G3DSA:1.10.3470.10 213 517 3.5E-51 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS22810 a019aa9ad33088eb6db607ed9a113cb1 529 SUPERFAMILY SSF48371 125 225 3.53E-7 T 29-03-2018 IPR016024 Armadillo-type fold GO:0005488 Y880_RS22810 a019aa9ad33088eb6db607ed9a113cb1 529 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 235 526 1.0E-132 T 29-03-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type Y880_RS22810 a019aa9ad33088eb6db607ed9a113cb1 529 Pfam PF02653 Branched-chain amino acid transport system / permease component 237 512 2.1E-54 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS22810 a019aa9ad33088eb6db607ed9a113cb1 529 Gene3D G3DSA:1.25.40.70 170 212 1.6E-6 T 29-03-2018 Y880_RS07845 fbcf810bf94b1f7daec595a6fa9dd685 183 SUPERFAMILY SSF49401 28 183 1.89E-24 T 29-03-2018 IPR008966 Adhesion domain Y880_RS07845 fbcf810bf94b1f7daec595a6fa9dd685 183 Gene3D G3DSA:2.60.40.1090 27 183 3.0E-28 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS07845 fbcf810bf94b1f7daec595a6fa9dd685 183 Pfam PF00419 Fimbrial protein 29 182 3.6E-10 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS18360 14c9598ccbcb0e0be0884f1d7c863305 464 Gene3D G3DSA:1.10.220.70 57 141 4.2E-39 T 29-03-2018 Y880_RS18360 14c9598ccbcb0e0be0884f1d7c863305 464 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 13 442 1.2E-220 T 29-03-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y880_RS18360 14c9598ccbcb0e0be0884f1d7c863305 464 Gene3D G3DSA:2.30.170.30 2 54 2.2E-24 T 29-03-2018 Y880_RS18360 14c9598ccbcb0e0be0884f1d7c863305 464 PIRSF PIRSF018788 2 461 2.5E-241 T 29-03-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y880_RS18360 14c9598ccbcb0e0be0884f1d7c863305 464 Gene3D G3DSA:3.20.20.70 144 451 1.8E-163 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS04305 a01e9cdaa426223722438b1bba5a9dc3 323 SUPERFAMILY SSF46785 7 64 1.22E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04305 a01e9cdaa426223722438b1bba5a9dc3 323 PIRSF PIRSF016838 1 55 0.089 T 29-03-2018 IPR028349 Protein PafC Y880_RS04305 a01e9cdaa426223722438b1bba5a9dc3 323 PIRSF PIRSF016838 64 320 3.5E-23 T 29-03-2018 IPR028349 Protein PafC Y880_RS04305 a01e9cdaa426223722438b1bba5a9dc3 323 Pfam PF08279 HTH domain 7 62 9.3E-16 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 Y880_RS04305 a01e9cdaa426223722438b1bba5a9dc3 323 Pfam PF13280 WYL domain 142 311 7.6E-33 T 29-03-2018 IPR026881 WYL domain Y880_RS04305 a01e9cdaa426223722438b1bba5a9dc3 323 Gene3D G3DSA:1.10.10.10 1 66 5.6E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08125 119c7e323b73ae859671c8555e035f53 202 Pfam PF06930 Protein of unknown function (DUF1282) 8 177 2.5E-20 T 29-03-2018 IPR009698 Protein of unknown function DUF1282 Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 Pfam PF11412 Disulphide bond corrector protein DsbC 38 150 8.1E-35 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 SUPERFAMILY SSF74863 35 151 2.88E-38 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 Gene3D G3DSA:3.40.30.10 478 591 2.3E-14 T 29-03-2018 Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 588 37.626 T 29-03-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 SUPERFAMILY SSF52833 474 585 8.93E-19 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 Gene3D G3DSA:2.60.40.1250 34 159 2.3E-38 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 180 385 1.5E-11 T 29-03-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Y880_RS22740 21d054a7380f44780d71a0ab02a3f763 591 Pfam PF13899 Thioredoxin-like 479 561 4.0E-19 T 29-03-2018 Y880_RS02190 7ae16e59110e509e1377732a6b5b4200 135 PIRSF PIRSF002889 1 135 2.4E-46 T 29-03-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Y880_RS02190 7ae16e59110e509e1377732a6b5b4200 135 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 133 1.1E-45 T 29-03-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Y880_RS02190 7ae16e59110e509e1377732a6b5b4200 135 Pfam PF00460 Flagella basal body rod protein 11 39 8.3E-9 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y880_RS02190 7ae16e59110e509e1377732a6b5b4200 135 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site Y880_RS26215 8b976a20ad6d55e82d40c9a6f0133de5 285 SUPERFAMILY SSF46689 2 78 3.05E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS26215 8b976a20ad6d55e82d40c9a6f0133de5 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 5 72 2.3E-11 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Y880_RS26215 8b976a20ad6d55e82d40c9a6f0133de5 285 SUPERFAMILY SSF53697 97 266 1.82E-16 T 29-03-2018 Y880_RS26215 8b976a20ad6d55e82d40c9a6f0133de5 285 Gene3D G3DSA:1.10.10.10 1 78 2.0E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26215 8b976a20ad6d55e82d40c9a6f0133de5 285 Gene3D G3DSA:3.40.50.10490 89 273 2.4E-16 T 29-03-2018 Y880_RS26215 8b976a20ad6d55e82d40c9a6f0133de5 285 Pfam PF01380 SIS domain 135 253 1.5E-12 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 Gene3D G3DSA:1.10.10.60 206 260 4.0E-9 T 29-03-2018 Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 203 244 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 SUPERFAMILY SSF46689 202 250 3.54E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 SMART SM00342 166 248 9.1E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 Gene3D G3DSA:1.10.10.60 159 205 1.1E-12 T 29-03-2018 Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 SUPERFAMILY SSF51182 7 173 1.27E-19 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 Gene3D G3DSA:2.60.120.10 3 158 5.1E-11 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS17870 3cd2a12cc775d91ae8d33752078a4bab 262 Pfam PF12833 Helix-turn-helix domain 175 250 6.5E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS11215 7686728c5eff5a03ff236a3011082875 73 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 2 63 9.0E-25 T 29-03-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system Y880_RS11215 7686728c5eff5a03ff236a3011082875 73 Gene3D G3DSA:1.10.1220.10 4 34 0.0088 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 Pfam PF00994 Probable molybdopterin binding domain 15 157 4.7E-34 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 SUPERFAMILY SSF53218 8 169 2.09E-47 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 Gene3D G3DSA:3.40.980.10 4 173 3.2E-32 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 SMART SM00852 15 159 6.2E-33 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 73 86 - T 29-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 9 170 4.1E-86 T 29-03-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 13 152 1.7E-33 T 29-03-2018 IPR001453 MoaB/Mog domain Y880_RS13150 094fb52c4eaa843f04ada84da052f0d6 179 PIRSF PIRSF006443 1 167 2.1E-66 T 29-03-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 Y880_RS21620 a3c10996dd3f60a8b1fdfcad7e4f5b8c 180 SMART SM00972 119 177 7.4E-22 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS21620 a3c10996dd3f60a8b1fdfcad7e4f5b8c 180 Gene3D G3DSA:2.60.40.1090 43 180 1.6E-6 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS21620 a3c10996dd3f60a8b1fdfcad7e4f5b8c 180 Pfam PF05229 Spore Coat Protein U domain 31 177 2.1E-36 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS18730 fc8921c9dffc2704db6bc8bc13cf68e1 163 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 141 1.5E-34 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS18730 fc8921c9dffc2704db6bc8bc13cf68e1 163 SUPERFAMILY SSF50129 1 159 1.11E-51 T 29-03-2018 IPR011032 GroES-like Y880_RS18730 fc8921c9dffc2704db6bc8bc13cf68e1 163 Gene3D G3DSA:3.90.180.10 1 163 1.5E-52 T 29-03-2018 Y880_RS18730 fc8921c9dffc2704db6bc8bc13cf68e1 163 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y880_RS19445 ac0d1b6be9719a22e63bd4a16ba0b937 129 Gene3D G3DSA:3.90.1030.10 1 117 2.8E-48 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19445 ac0d1b6be9719a22e63bd4a16ba0b937 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.518 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19445 ac0d1b6be9719a22e63bd4a16ba0b937 129 Pfam PF01196 Ribosomal protein L17 20 116 2.6E-33 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19445 ac0d1b6be9719a22e63bd4a16ba0b937 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 1.1E-45 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19445 ac0d1b6be9719a22e63bd4a16ba0b937 129 SUPERFAMILY SSF64263 1 119 5.1E-50 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19445 ac0d1b6be9719a22e63bd4a16ba0b937 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29490 e0b283e903cc2f7780a6e83435ee7b11 255 Gene3D G3DSA:3.40.50.150 7 255 6.4E-30 T 29-03-2018 Y880_RS29490 e0b283e903cc2f7780a6e83435ee7b11 255 Pfam PF08241 Methyltransferase domain 47 135 3.2E-16 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS29490 e0b283e903cc2f7780a6e83435ee7b11 255 SUPERFAMILY SSF53335 15 207 5.11E-35 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22685 a705d423a9d6bcdd2f804bb8d7b72451 433 Pfam PF10100 Staphylopine dehydrogenase 10 429 2.0E-169 T 29-03-2018 IPR016935 Staphylopine dehydrogenase Y880_RS22685 a705d423a9d6bcdd2f804bb8d7b72451 433 Gene3D G3DSA:3.40.50.720 4 282 2.0E-7 T 29-03-2018 Y880_RS05965 8b4bb87e96a644f17480c6d8a4e72b62 274 Gene3D G3DSA:2.30.30.60 225 273 2.7E-8 T 29-03-2018 Y880_RS05965 8b4bb87e96a644f17480c6d8a4e72b62 274 Pfam PF05552 Conserved TM helix 109 154 1.2E-8 T 29-03-2018 IPR008910 Conserved TM helix Y880_RS05965 8b4bb87e96a644f17480c6d8a4e72b62 274 Pfam PF05552 Conserved TM helix 14 60 7.4E-13 T 29-03-2018 IPR008910 Conserved TM helix Y880_RS05965 8b4bb87e96a644f17480c6d8a4e72b62 274 SUPERFAMILY SSF50182 219 272 5.56E-7 T 29-03-2018 IPR010920 LSM domain Y880_RS05965 8b4bb87e96a644f17480c6d8a4e72b62 274 Pfam PF00924 Mechanosensitive ion channel 184 271 7.3E-9 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PIRSF PIRSF000350 2 457 6.5E-79 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 Gene3D G3DSA:3.50.50.60 164 218 8.8E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 SUPERFAMILY SSF51905 6 336 1.22E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 144 153 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 448 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 6.8E-64 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 141 159 8.1E-37 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 8.1E-37 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 8.1E-37 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 8.1E-37 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.1E-37 T 29-03-2018 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 Gene3D G3DSA:3.30.390.30 336 461 1.2E-34 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 Gene3D G3DSA:3.50.50.60 219 335 8.1E-27 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 326 2.9E-69 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 SUPERFAMILY SSF55424 344 463 5.5E-33 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 454 9.5E-30 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 464 5.6E-144 T 29-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Y880_RS08585 42dcb64ba1f4461dafb7305d24072170 464 Gene3D G3DSA:3.50.50.60 6 163 1.1E-27 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS01520 1f4934775f501b79c534583bc5a2b2ad 222 SUPERFAMILY SSF53328 6 204 6.15E-67 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS01520 1f4934775f501b79c534583bc5a2b2ad 222 Gene3D G3DSA:3.40.50.170 5 202 1.4E-72 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS01520 1f4934775f501b79c534583bc5a2b2ad 222 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 6 194 4.7E-78 T 29-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Y880_RS01520 1f4934775f501b79c534583bc5a2b2ad 222 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 137 160 - T 29-03-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS01520 1f4934775f501b79c534583bc5a2b2ad 222 Pfam PF00551 Formyl transferase 6 184 2.7E-66 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS01520 1f4934775f501b79c534583bc5a2b2ad 222 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 6 191 32.7 T 29-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Y880_RS21150 0f99b2ba4f548c4219b86f4f7d705ddb 91 SUPERFAMILY SSF46992 3 86 3.14E-33 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS21150 0f99b2ba4f548c4219b86f4f7d705ddb 91 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 19 91 6.0E-35 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS21150 0f99b2ba4f548c4219b86f4f7d705ddb 91 Pfam PF01649 Ribosomal protein S20 2 84 8.0E-29 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS21150 0f99b2ba4f548c4219b86f4f7d705ddb 91 Gene3D G3DSA:1.20.58.110 1 91 1.5E-31 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS21150 0f99b2ba4f548c4219b86f4f7d705ddb 91 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 85 7.8E-30 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS21150 0f99b2ba4f548c4219b86f4f7d705ddb 91 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.91 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS24360 8ad7c39917fa7681aa9d312d462dfcf3 230 SUPERFAMILY SSF161098 13 208 1.96E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24360 8ad7c39917fa7681aa9d312d462dfcf3 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 223 3.6E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS24360 8ad7c39917fa7681aa9d312d462dfcf3 230 Gene3D G3DSA:1.10.3720.10 1 227 3.7E-38 T 29-03-2018 Y880_RS24360 8ad7c39917fa7681aa9d312d462dfcf3 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 117 3.0E-22 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 SMART SM00563 304 431 9.4E-27 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 SUPERFAMILY SSF69593 262 523 6.93E-32 T 29-03-2018 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 Pfam PF01553 Acyltransferase 292 428 8.5E-20 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 15 816 31.924 T 29-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 PIRSF PIRSF000437 21 827 0.0 T 29-03-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 14 812 0.0 T 29-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 Gene3D G3DSA:3.40.1130.10 250 525 2.7E-33 T 29-03-2018 Y880_RS16520 b57ef55dc356314b994a7db7db4785ec 834 PIRSF PIRSF500064 4 829 0.0 T 29-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 Y880_RS13445 55b72af5af4bc59a8be6aab5a3a8eca1 326 Gene3D G3DSA:3.60.21.10 2 324 1.6E-33 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS13445 55b72af5af4bc59a8be6aab5a3a8eca1 326 SUPERFAMILY SSF56300 235 305 8.98E-34 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS13445 55b72af5af4bc59a8be6aab5a3a8eca1 326 SUPERFAMILY SSF56300 5 174 8.98E-34 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS13445 55b72af5af4bc59a8be6aab5a3a8eca1 326 Pfam PF00149 Calcineurin-like phosphoesterase 11 149 6.1E-10 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y880_RS28940 a2f7c10c094b080302b10dd253beedb2 243 SUPERFAMILY SSF53850 22 240 7.86E-39 T 29-03-2018 Y880_RS28940 a2f7c10c094b080302b10dd253beedb2 243 SMART SM00062 21 243 7.6E-4 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS28940 a2f7c10c094b080302b10dd253beedb2 243 Gene3D G3DSA:3.40.190.10 135 243 8.0E-10 T 29-03-2018 Y880_RS28940 a2f7c10c094b080302b10dd253beedb2 243 Gene3D G3DSA:3.40.190.10 21 134 9.1E-15 T 29-03-2018 Y880_RS28940 a2f7c10c094b080302b10dd253beedb2 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 241 5.4E-22 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS00930 02130290e5d65f81d5609a9c9d59ed83 112 Pfam PF12088 Protein of unknown function (DUF3565) 48 104 6.6E-29 T 29-03-2018 IPR021948 Protein of unknown function DUF3565 Y880_RS22800 8caa4acd482d69c22841f9587af12802 197 Pfam PF01914 MarC family integral membrane protein 2 193 7.2E-37 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y880_RS22800 8caa4acd482d69c22841f9587af12802 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 3 190 4.5E-32 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y880_RS18605 30de72a661f2ac9f24cad71081f49a77 496 Pfam PF13520 Amino acid permease 16 427 7.7E-32 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS18605 30de72a661f2ac9f24cad71081f49a77 496 PIRSF PIRSF006060 1 487 9.2E-66 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS20670 2fb7b2734cd6e46f1b0967230a8e5604 200 SUPERFAMILY SSF158710 50 192 5.23E-51 T 29-03-2018 IPR023153 PSPTO4464-like domain Y880_RS20670 2fb7b2734cd6e46f1b0967230a8e5604 200 PIRSF PIRSF016183 24 198 1.7E-67 T 29-03-2018 IPR006839 Ribosome-associated, YjgA Y880_RS20670 2fb7b2734cd6e46f1b0967230a8e5604 200 Gene3D G3DSA:1.10.60.30 125 200 5.9E-29 T 29-03-2018 Y880_RS20670 2fb7b2734cd6e46f1b0967230a8e5604 200 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 29 194 21.511 T 29-03-2018 IPR006839 Ribosome-associated, YjgA Y880_RS20670 2fb7b2734cd6e46f1b0967230a8e5604 200 Gene3D G3DSA:1.10.60.30 51 120 3.9E-26 T 29-03-2018 Y880_RS20670 2fb7b2734cd6e46f1b0967230a8e5604 200 Pfam PF04751 Protein of unknown function (DUF615) 39 190 5.1E-55 T 29-03-2018 IPR006839 Ribosome-associated, YjgA Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 375 398 8.6E-18 T 29-03-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 291 309 8.6E-18 T 29-03-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 332 356 8.6E-18 T 29-03-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 249 275 8.6E-18 T 29-03-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 365 375 8.6E-18 T 29-03-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 368 377 - T 29-03-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 Gene3D G3DSA:1.10.630.10 224 425 1.0E-51 T 29-03-2018 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 Pfam PF00067 Cytochrome P450 228 398 7.8E-41 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 Gene3D G3DSA:1.10.630.10 8 223 9.9E-16 T 29-03-2018 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 292 303 9.4E-11 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 240 257 9.4E-11 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 375 386 9.4E-11 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 366 375 9.4E-11 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS16550 ef2b126c2f5b997002d19194a82b557a 425 SUPERFAMILY SSF48264 25 424 1.7E-66 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS11220 0d913b2adb4d418723884d16c3f110a6 237 SUPERFAMILY SSF54060 23 223 6.36E-83 T 29-03-2018 Y880_RS11220 0d913b2adb4d418723884d16c3f110a6 237 Pfam PF04231 Endonuclease I 25 221 1.1E-37 T 29-03-2018 IPR007346 Endonuclease I GO:0004518 Y880_RS05865 9acc0f9567e4d0e4da55c0833a7a9dfb 205 Pfam PF12710 haloacid dehalogenase-like hydrolase 64 160 8.6E-10 T 29-03-2018 Y880_RS05865 9acc0f9567e4d0e4da55c0833a7a9dfb 205 SUPERFAMILY SSF56784 2 191 1.15E-44 T 29-03-2018 IPR023214 HAD-like domain Y880_RS05865 9acc0f9567e4d0e4da55c0833a7a9dfb 205 Gene3D G3DSA:3.90.1470.10 13 85 5.6E-33 T 29-03-2018 Y880_RS05865 9acc0f9567e4d0e4da55c0833a7a9dfb 205 Gene3D G3DSA:3.90.1470.10 86 124 9.1E-11 T 29-03-2018 Y880_RS05865 9acc0f9567e4d0e4da55c0833a7a9dfb 205 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 2 203 4.2E-125 T 29-03-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 Y880_RS00440 35151979f806c6d400135eb20db8afe9 151 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 141 3.8E-32 T 29-03-2018 IPR007359 Positive regulator of sigma(E), RseC/MucC Y880_RS00440 35151979f806c6d400135eb20db8afe9 151 PIRSF PIRSF004923 1 150 1.5E-42 T 29-03-2018 IPR026268 Protein RseC Y880_RS07265 5a169163331e18852ead0b2b3de59b81 74 SUPERFAMILY SSF141447 1 74 9.55E-31 T 29-03-2018 Y880_RS07265 5a169163331e18852ead0b2b3de59b81 74 Pfam PF11462 Protein of unknown function (DUF3203) 1 74 5.7E-35 T 29-03-2018 IPR021564 Protein of unknown function DUF3203 Y880_RS00200 3dcd543a3a03b1bbb2a6537005b9dbbf 212 Gene3D G3DSA:2.160.10.10 1 211 1.2E-40 T 29-03-2018 Y880_RS00200 3dcd543a3a03b1bbb2a6537005b9dbbf 212 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 145 2.5E-7 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS00200 3dcd543a3a03b1bbb2a6537005b9dbbf 212 SUPERFAMILY SSF51161 17 207 5.27E-46 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS02825 61e37f08801301a088086d0938a41d0f 393 Gene3D G3DSA:3.40.50.10540 1 393 1.2E-130 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS02825 61e37f08801301a088086d0938a41d0f 393 Pfam PF02515 CoA-transferase family III 5 360 6.6E-101 T 29-03-2018 IPR003673 CoA-transferase family III GO:0003824 Y880_RS02825 61e37f08801301a088086d0938a41d0f 393 SUPERFAMILY SSF89796 3 392 3.01E-124 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS27045 c190d5a9d9e3504476c172333044c69d 169 Gene3D G3DSA:3.10.450.40 8 156 1.4E-24 T 29-03-2018 Y880_RS27045 c190d5a9d9e3504476c172333044c69d 169 SUPERFAMILY SSF160719 37 152 9.29E-10 T 29-03-2018 Y880_RS27045 c190d5a9d9e3504476c172333044c69d 169 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 11 161 1.5E-27 T 29-03-2018 IPR017737 Type VI secretion system, lysozyme-related protein Y880_RS27045 c190d5a9d9e3504476c172333044c69d 169 Pfam PF04965 Gene 25-like lysozyme 39 141 1.3E-21 T 29-03-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y880_RS09310 1456a1b1bc51bdd22447cd773edd4a1a 474 Pfam PF02321 Outer membrane efflux protein 281 460 9.1E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS09310 1456a1b1bc51bdd22447cd773edd4a1a 474 Pfam PF02321 Outer membrane efflux protein 60 254 1.4E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS09310 1456a1b1bc51bdd22447cd773edd4a1a 474 Gene3D G3DSA:1.20.1600.10 18 468 7.7E-93 T 29-03-2018 Y880_RS09310 1456a1b1bc51bdd22447cd773edd4a1a 474 SUPERFAMILY SSF56954 2 465 3.4E-105 T 29-03-2018 Y880_RS09310 1456a1b1bc51bdd22447cd773edd4a1a 474 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 462 3.9E-104 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS18500 72224a49333d8aee192764298d04b025 159 SUPERFAMILY SSF48013 19 150 2.88E-43 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y880_RS18500 72224a49333d8aee192764298d04b025 159 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 19 150 23.149 T 29-03-2018 IPR011605 NusB antitermination factor GO:0006353 Y880_RS18500 72224a49333d8aee192764298d04b025 159 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 21 147 3.6E-44 T 29-03-2018 IPR011605 NusB antitermination factor GO:0006353 Y880_RS18500 72224a49333d8aee192764298d04b025 159 Pfam PF01029 NusB family 22 146 3.8E-34 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y880_RS18500 72224a49333d8aee192764298d04b025 159 Gene3D G3DSA:1.10.940.10 16 153 1.6E-41 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y880_RS27010 c5e5a2236f9cbe58ee2e8537e4c45264 154 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 3 146 5.0E-50 T 29-03-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y880_RS27010 c5e5a2236f9cbe58ee2e8537e4c45264 154 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 11 143 6.8E-44 T 29-03-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y880_RS27165 897a91ad87dbd8f9581d8ea639cd83c5 264 Pfam PF02104 SURF1 family 40 237 1.2E-31 T 29-03-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS27670 b28c6ddcfdb9bd34f3eb351fd6bc192f 134 Pfam PF03817 Malonate transporter MadL subunit 1 117 2.7E-50 T 29-03-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 Y880_RS27670 b28c6ddcfdb9bd34f3eb351fd6bc192f 134 TIGRFAM TIGR00807 malonate_madL: malonate transporter, MadL subunit 1 120 1.4E-45 T 29-03-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 Y880_RS08610 be1d42e36d86292c605932df09bcb39a 328 Pfam PF05141 Pyoverdine/dityrosine biosynthesis protein 48 301 1.1E-78 T 29-03-2018 IPR007817 Pyoverdine biosynthesis Y880_RS08610 be1d42e36d86292c605932df09bcb39a 328 PIRSF PIRSF037196 2 325 1.8E-167 T 29-03-2018 IPR017133 Pyoverdine chromophore biosynthesis protein PvcA Y880_RS11185 c6070314c26b2b20047972b98ef9e6d3 287 Pfam PF12697 Alpha/beta hydrolase family 26 268 1.8E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS11185 c6070314c26b2b20047972b98ef9e6d3 287 SUPERFAMILY SSF53474 7 277 1.0E-48 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS11185 c6070314c26b2b20047972b98ef9e6d3 287 Gene3D G3DSA:3.40.50.1820 6 278 5.8E-39 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS09225 f4ae11b6a5cea2db882d34675be3fa09 131 Pfam PF14107 Domain of unknown function (DUF4280) 6 125 2.5E-27 T 29-03-2018 IPR025460 Protein of unknown function DUF4280 Y880_RS29705 2cf80dfb8fe4cc20c4e2ead50cea199e 353 Gene3D G3DSA:3.40.50.1820 47 349 2.5E-10 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29705 2cf80dfb8fe4cc20c4e2ead50cea199e 353 Pfam PF12048 Protein of unknown function (DUF3530) 13 341 4.5E-106 T 29-03-2018 IPR022529 Protein of unknown function DUF3530 Y880_RS29705 2cf80dfb8fe4cc20c4e2ead50cea199e 353 SUPERFAMILY SSF53474 72 127 2.82E-9 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29705 2cf80dfb8fe4cc20c4e2ead50cea199e 353 SUPERFAMILY SSF53474 207 319 2.82E-9 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03380 cab5ee42164b0dfd6b6a686711a37f12 323 Pfam PF01545 Cation efflux family 30 243 1.9E-41 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y880_RS03380 cab5ee42164b0dfd6b6a686711a37f12 323 SUPERFAMILY SSF161111 22 244 7.98E-49 T 29-03-2018 Y880_RS03380 cab5ee42164b0dfd6b6a686711a37f12 323 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 317 6.2E-65 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y880_RS03380 cab5ee42164b0dfd6b6a686711a37f12 323 Gene3D G3DSA:1.20.1510.10 22 243 1.6E-50 T 29-03-2018 Y880_RS21535 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 32 50 1.4E-43 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS21535 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 59 81 1.4E-43 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS21535 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 13 32 1.4E-43 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS21535 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 86 110 1.4E-43 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS21535 0982c3fa320b4deb51c49e142c3fe78c 234 Pfam PF02308 MgtC family 11 131 5.2E-35 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS07305 6dae7877383deda7e268ffbbaf25ffca 99 PIRSF PIRSF037266 1 97 4.2E-45 T 29-03-2018 IPR017162 Uncharacterised conserved protein UCP037266 Y880_RS07305 6dae7877383deda7e268ffbbaf25ffca 99 Gene3D G3DSA:1.10.10.10 8 98 1.7E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07305 6dae7877383deda7e268ffbbaf25ffca 99 SUPERFAMILY SSF46785 9 90 2.97E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07305 6dae7877383deda7e268ffbbaf25ffca 99 Pfam PF09904 Winged helix-turn helix 5 94 1.3E-39 T 29-03-2018 IPR017162 Uncharacterised conserved protein UCP037266 Y880_RS14745 12c7720a30e28de54656955779d0fb81 79 SUPERFAMILY SSF47336 3 77 3.01E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS14745 12c7720a30e28de54656955779d0fb81 79 Gene3D G3DSA:1.10.1200.10 2 79 1.8E-14 T 29-03-2018 Y880_RS14745 12c7720a30e28de54656955779d0fb81 79 Pfam PF00550 Phosphopantetheine attachment site 9 72 1.1E-7 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS04450 656a596068829ec0b401d69788ecaa13 208 Gene3D G3DSA:1.10.472.50 21 114 6.6E-6 T 29-03-2018 Y880_RS04450 656a596068829ec0b401d69788ecaa13 208 PIRSF PIRSF035170 1 207 1.4E-81 T 29-03-2018 IPR009218 Predicted HD phosphohydrolase Y880_RS04450 656a596068829ec0b401d69788ecaa13 208 SUPERFAMILY SSF109604 23 194 1.2E-18 T 29-03-2018 Y880_RS07855 1924cb5e3082f870a2b919d924fbb411 872 Pfam PF00577 Outer membrane usher protein 197 771 8.6E-143 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 Y880_RS07855 1924cb5e3082f870a2b919d924fbb411 872 SUPERFAMILY SSF141729 34 157 3.79E-28 T 29-03-2018 Y880_RS07855 1924cb5e3082f870a2b919d924fbb411 872 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 312 322 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site Y880_RS07855 1924cb5e3082f870a2b919d924fbb411 872 Pfam PF13953 PapC C-terminal domain 780 843 3.9E-21 T 29-03-2018 IPR025949 PapC-like, C-terminal domain Y880_RS07855 1924cb5e3082f870a2b919d924fbb411 872 Pfam PF13954 PapC N-terminal domain 35 179 4.9E-40 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 Y880_RS01415 e0ec9870097b1551b0e52cc4fc39c091 642 SUPERFAMILY SSF53649 251 580 6.15E-56 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS01415 e0ec9870097b1551b0e52cc4fc39c091 642 Pfam PF00884 Sulfatase 256 534 9.1E-30 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS01415 e0ec9870097b1551b0e52cc4fc39c091 642 Pfam PF11893 Domain of unknown function (DUF3413) 76 247 1.2E-18 T 29-03-2018 IPR024588 Inner membrane protein YejM, N-terminal Y880_RS01415 e0ec9870097b1551b0e52cc4fc39c091 642 Gene3D G3DSA:3.40.720.10 247 544 6.2E-36 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS01415 e0ec9870097b1551b0e52cc4fc39c091 642 PIRSF PIRSF004950 1 625 1.3E-206 T 29-03-2018 IPR012159 Inner membrane protein YejM Y880_RS15500 55e303d8a190492b44af291bf6405af2 268 SUPERFAMILY SSF53850 11 259 1.34E-52 T 29-03-2018 Y880_RS15500 55e303d8a190492b44af291bf6405af2 268 Gene3D G3DSA:3.40.190.10 136 215 3.7E-8 T 29-03-2018 Y880_RS15500 55e303d8a190492b44af291bf6405af2 268 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 Y880_RS15500 55e303d8a190492b44af291bf6405af2 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 258 3.9E-40 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS15500 55e303d8a190492b44af291bf6405af2 268 Gene3D G3DSA:3.40.190.10 21 135 1.7E-30 T 29-03-2018 Y880_RS15500 55e303d8a190492b44af291bf6405af2 268 SMART SM00062 38 261 2.0E-56 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS02700 25502393b7499f61aa330cf0b43a8520 263 Gene3D G3DSA:3.40.50.720 1 263 3.2E-56 T 29-03-2018 Y880_RS02700 25502393b7499f61aa330cf0b43a8520 263 SUPERFAMILY SSF69572 3 257 1.11E-65 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y880_RS02700 25502393b7499f61aa330cf0b43a8520 263 Pfam PF00899 ThiF family 15 255 9.7E-42 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y880_RS03545 a484649fd19082e08f6229267e6abd7b 143 Pfam PF03928 Haem-degrading 10 136 3.9E-30 T 29-03-2018 IPR005624 Haem-degrading Y880_RS03545 a484649fd19082e08f6229267e6abd7b 143 SUPERFAMILY SSF143744 7 139 9.68E-35 T 29-03-2018 Y880_RS04555 0d9784da6a67d15943fd773d8c55aa5b 308 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 5 302 5.8E-166 T 29-03-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 Y880_RS04555 0d9784da6a67d15943fd773d8c55aa5b 308 Pfam PF01522 Polysaccharide deacetylase 76 164 2.9E-17 T 29-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Y880_RS04555 0d9784da6a67d15943fd773d8c55aa5b 308 Gene3D G3DSA:3.20.20.370 1 308 2.8E-78 T 29-03-2018 Y880_RS04555 0d9784da6a67d15943fd773d8c55aa5b 308 SUPERFAMILY SSF88713 4 303 1.51E-101 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS26545 4e828824a2364c7d328db8e624fa7594 214 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 32 211 8.5E-58 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y880_RS26545 4e828824a2364c7d328db8e624fa7594 214 Pfam PF02527 rRNA small subunit methyltransferase G 28 207 1.3E-62 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y880_RS26545 4e828824a2364c7d328db8e624fa7594 214 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 20 209 27.9 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y880_RS26545 4e828824a2364c7d328db8e624fa7594 214 SUPERFAMILY SSF53335 13 212 3.28E-36 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS26545 4e828824a2364c7d328db8e624fa7594 214 PIRSF PIRSF003078 5 214 1.2E-60 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y880_RS26545 4e828824a2364c7d328db8e624fa7594 214 Gene3D G3DSA:3.40.50.150 2 214 5.6E-30 T 29-03-2018 Y880_RS22170 28609243754df6ec14ff87fc185586fd 61 SUPERFAMILY SSF69047 1 56 1.14E-22 T 29-03-2018 IPR008462 CsbD-like domain Y880_RS22170 28609243754df6ec14ff87fc185586fd 61 Gene3D G3DSA:1.10.1470.10 1 58 2.4E-18 T 29-03-2018 IPR008462 CsbD-like domain Y880_RS22170 28609243754df6ec14ff87fc185586fd 61 Pfam PF05532 CsbD-like 4 55 2.4E-20 T 29-03-2018 IPR008462 CsbD-like domain Y880_RS22170 28609243754df6ec14ff87fc185586fd 61 PIRSF PIRSF039008 1 59 1.1E-28 T 29-03-2018 IPR026042 Stress response protein YjbJ Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.3E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.3E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.3E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 Gene3D G3DSA:3.40.190.10 88 177 9.2E-24 T 29-03-2018 Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 Pfam PF03466 LysR substrate binding domain 91 292 2.2E-57 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 Gene3D G3DSA:3.40.190.10 178 264 8.0E-25 T 29-03-2018 Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.3E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 Gene3D G3DSA:1.10.10.10 1 85 4.9E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 SUPERFAMILY SSF46785 2 84 6.61E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15095 e22205a348c2331b3d80aa45c4e00a97 308 SUPERFAMILY SSF53850 91 296 6.83E-51 T 29-03-2018 Y880_RS06415 87045522df779006c5e7846076b0bf5a 385 Gene3D G3DSA:3.10.580.10 234 382 5.2E-33 T 29-03-2018 Y880_RS06415 87045522df779006c5e7846076b0bf5a 385 Pfam PF04982 HPP family 58 176 3.3E-30 T 29-03-2018 IPR007065 HPP Y880_RS06415 87045522df779006c5e7846076b0bf5a 385 SUPERFAMILY SSF54631 232 374 4.11E-34 T 29-03-2018 Y880_RS06415 87045522df779006c5e7846076b0bf5a 385 Pfam PF00571 CBS domain 245 297 9.4E-11 T 29-03-2018 IPR000644 CBS domain Y880_RS06415 87045522df779006c5e7846076b0bf5a 385 Pfam PF00571 CBS domain 318 370 2.0E-12 T 29-03-2018 IPR000644 CBS domain Y880_RS06415 87045522df779006c5e7846076b0bf5a 385 SMART SM00116 323 371 2.0E-11 T 29-03-2018 IPR000644 CBS domain Y880_RS06415 87045522df779006c5e7846076b0bf5a 385 SMART SM00116 251 299 2.0E-7 T 29-03-2018 IPR000644 CBS domain Y880_RS11340 c0060837d1537e54bec55cd833a15b27 193 SUPERFAMILY SSF46689 1 71 2.31E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS11340 c0060837d1537e54bec55cd833a15b27 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 3.8E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS11340 c0060837d1537e54bec55cd833a15b27 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 3.8E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS11340 c0060837d1537e54bec55cd833a15b27 193 Gene3D G3DSA:1.10.10.60 2 61 2.3E-14 T 29-03-2018 Y880_RS11340 c0060837d1537e54bec55cd833a15b27 193 Gene3D G3DSA:1.10.357.10 62 181 6.8E-11 T 29-03-2018 Y880_RS11340 c0060837d1537e54bec55cd833a15b27 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 7.5E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS11340 c0060837d1537e54bec55cd833a15b27 193 SUPERFAMILY SSF48498 76 174 2.36E-23 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 Pfam PF02311 AraC-like ligand binding domain 25 118 3.3E-8 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 Gene3D G3DSA:1.10.10.60 209 257 5.1E-10 T 29-03-2018 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 SUPERFAMILY SSF51182 10 179 1.41E-20 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 SUPERFAMILY SSF46689 211 254 5.82E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 Gene3D G3DSA:2.60.120.10 4 82 1.0E-8 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 Pfam PF12833 Helix-turn-helix domain 176 252 2.9E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 Gene3D G3DSA:1.10.10.60 83 208 3.1E-6 T 29-03-2018 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 205 248 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 221 236 9.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 252 9.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS00575 1fa7b3d3e654f17a23a1a25140f74dc2 262 SMART SM00342 170 252 3.2E-16 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS12010 978715ac81cb6c99b55b84ad224b2b9d 510 Gene3D G3DSA:1.20.1250.20 14 204 5.3E-34 T 29-03-2018 Y880_RS12010 978715ac81cb6c99b55b84ad224b2b9d 510 Pfam PF07690 Major Facilitator Superfamily 21 414 1.6E-52 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS12010 978715ac81cb6c99b55b84ad224b2b9d 510 SUPERFAMILY SSF103473 253 434 4.58E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS12010 978715ac81cb6c99b55b84ad224b2b9d 510 SUPERFAMILY SSF103473 8 198 4.58E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS12010 978715ac81cb6c99b55b84ad224b2b9d 510 Gene3D G3DSA:1.20.1250.20 257 507 2.4E-23 T 29-03-2018 Y880_RS12010 978715ac81cb6c99b55b84ad224b2b9d 510 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 495 4.2E-132 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 SUPERFAMILY SSF56059 120 386 1.33E-58 T 29-03-2018 Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 Gene3D G3DSA:3.30.470.20 198 393 4.2E-39 T 29-03-2018 Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 8 392 53.597 T 29-03-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 SUPERFAMILY SSF52440 3 112 1.73E-34 T 29-03-2018 IPR016185 Pre-ATP-grasp domain Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 Pfam PF02222 ATP-grasp domain 123 295 8.2E-55 T 29-03-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 81 1.7E-4 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 Gene3D G3DSA:3.40.50.20 2 122 4.4E-21 T 29-03-2018 Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 Gene3D G3DSA:3.30.1490.20 129 197 2.1E-19 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS16920 9fa378e97ede5fcf2ff2a944db82fd7f 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 392 9.0E-199 T 29-03-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 Y880_RS25875 4a817a5e24bcdcceff72139fd71b8e1f 605 Gene3D G3DSA:1.25.40.10 313 563 4.4E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS04240 9fd8384b341ec95dcd45d7642481ac3d 280 Gene3D G3DSA:3.40.50.300 10 252 1.6E-53 T 29-03-2018 Y880_RS04240 9fd8384b341ec95dcd45d7642481ac3d 280 PIRSF PIRSF003092 2 273 4.3E-83 T 29-03-2018 IPR025501 ATP binding protein MinD Y880_RS04240 9fd8384b341ec95dcd45d7642481ac3d 280 SUPERFAMILY SSF52540 11 269 1.86E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS04240 9fd8384b341ec95dcd45d7642481ac3d 280 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 11 250 7.5E-25 T 29-03-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Y880_RS00585 94c3a8bab218df161330f9eff05e525b 395 Gene3D G3DSA:3.10.310.10 192 373 6.0E-75 T 29-03-2018 Y880_RS00585 94c3a8bab218df161330f9eff05e525b 395 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 5 395 5.9E-238 T 29-03-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 Y880_RS00585 94c3a8bab218df161330f9eff05e525b 395 Gene3D G3DSA:3.10.310.10 3 191 4.2E-81 T 29-03-2018 Y880_RS00585 94c3a8bab218df161330f9eff05e525b 395 SUPERFAMILY SSF54506 189 393 3.3E-78 T 29-03-2018 Y880_RS00585 94c3a8bab218df161330f9eff05e525b 395 Pfam PF04303 PrpF protein 6 391 1.5E-185 T 29-03-2018 IPR007400 PrpF protein Y880_RS00585 94c3a8bab218df161330f9eff05e525b 395 SUPERFAMILY SSF54506 3 181 3.61E-68 T 29-03-2018 Y880_RS27050 9686fdb3880a51e7f2a36d1a6816be2d 619 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 618 2.9E-210 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like Y880_RS27050 9686fdb3880a51e7f2a36d1a6816be2d 619 PIRSF PIRSF028304 1 619 5.8E-191 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like Y880_RS27050 9686fdb3880a51e7f2a36d1a6816be2d 619 Pfam PF05947 Type VI secretion system, TssF 6 617 8.7E-229 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like Y880_RS03015 b76535f29af110ecbaaf5c195f5b7d7e 202 SUPERFAMILY SSF46689 12 86 1.85E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS03015 b76535f29af110ecbaaf5c195f5b7d7e 202 Gene3D G3DSA:1.10.10.60 1 45 6.0E-14 T 29-03-2018 Y880_RS03015 b76535f29af110ecbaaf5c195f5b7d7e 202 Gene3D G3DSA:1.10.260.40 46 106 1.2E-9 T 29-03-2018 Y880_RS03015 b76535f29af110ecbaaf5c195f5b7d7e 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 2.0E-12 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03015 b76535f29af110ecbaaf5c195f5b7d7e 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 4.3E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03015 b76535f29af110ecbaaf5c195f5b7d7e 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 4.3E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS27785 e14f7c6593c5fa3c42138e25a7412103 347 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 4.9E-20 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Y880_RS27785 e14f7c6593c5fa3c42138e25a7412103 347 Gene3D G3DSA:3.40.50.720 2 131 7.4E-36 T 29-03-2018 Y880_RS27785 e14f7c6593c5fa3c42138e25a7412103 347 SUPERFAMILY SSF51735 3 151 4.54E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS27785 e14f7c6593c5fa3c42138e25a7412103 347 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 224 1.2E-10 T 29-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 Y880_RS27785 e14f7c6593c5fa3c42138e25a7412103 347 SUPERFAMILY SSF55347 124 276 1.05E-28 T 29-03-2018 Y880_RS27785 e14f7c6593c5fa3c42138e25a7412103 347 Gene3D G3DSA:3.30.360.10 132 345 2.9E-44 T 29-03-2018 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 Gene3D G3DSA:1.10.10.10 146 208 4.7E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 4.6E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 SUPERFAMILY SSF52172 1 128 5.98E-31 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 SMART SM00421 145 202 6.3E-20 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 Gene3D G3DSA:3.40.50.2300 1 133 3.9E-31 T 29-03-2018 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 SMART SM00448 2 114 4.5E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 SUPERFAMILY SSF46894 137 208 7.14E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 Pfam PF00072 Response regulator receiver domain 4 115 1.1E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS17980 8677c3161a83fe9bcae9e734e4252cbf 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 Gene3D G3DSA:3.40.50.980 166 314 8.9E-36 T 29-03-2018 Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 Pfam PF00501 AMP-binding enzyme 18 404 1.8E-72 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 Pfam PF13193 AMP-binding enzyme C-terminal domain 414 493 1.4E-8 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 SUPERFAMILY SSF56801 14 505 1.07E-111 T 29-03-2018 Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 ProSitePatterns PS00455 Putative AMP-binding domain signature. 161 172 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 Gene3D G3DSA:2.30.38.10 315 397 2.2E-21 T 29-03-2018 Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 Gene3D G3DSA:3.30.300.30 398 513 6.9E-23 T 29-03-2018 Y880_RS01755 abfea31a144571f2de66aac3974cfc3e 517 Gene3D G3DSA:3.40.50.980 1 165 2.3E-27 T 29-03-2018 Y880_RS05330 a31ab9f96595388412245f0df50e4ee6 200 Gene3D G3DSA:3.40.30.10 1 93 2.5E-28 T 29-03-2018 Y880_RS05330 a31ab9f96595388412245f0df50e4ee6 200 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 75 2.6E-16 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS05330 a31ab9f96595388412245f0df50e4ee6 200 SUPERFAMILY SSF52833 1 76 1.25E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS05330 a31ab9f96595388412245f0df50e4ee6 200 Pfam PF00043 Glutathione S-transferase, C-terminal domain 109 189 1.6E-11 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS05330 a31ab9f96595388412245f0df50e4ee6 200 Gene3D G3DSA:1.20.1050.10 94 200 4.6E-26 T 29-03-2018 Y880_RS05330 a31ab9f96595388412245f0df50e4ee6 200 SUPERFAMILY SSF47616 77 200 6.0E-30 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS10530 828a72de93b4d9b6c49651aa56dd5585 418 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 305 324 - T 29-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Y880_RS10530 828a72de93b4d9b6c49651aa56dd5585 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 413 9.4E-118 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y880_RS10530 828a72de93b4d9b6c49651aa56dd5585 418 SMART SM01329 30 414 1.7E-180 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y880_RS10530 828a72de93b4d9b6c49651aa56dd5585 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 418 4.4E-225 T 29-03-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y880_RS10530 828a72de93b4d9b6c49651aa56dd5585 418 SUPERFAMILY SSF53659 4 418 2.11E-147 T 29-03-2018 Y880_RS10530 828a72de93b4d9b6c49651aa56dd5585 418 Gene3D G3DSA:3.40.718.10 10 418 1.3E-132 T 29-03-2018 Y880_RS05665 3c7dfa5a87bc9e0723d8e92cc982d439 85 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 13 85 4.7E-22 T 29-03-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 Y880_RS05665 3c7dfa5a87bc9e0723d8e92cc982d439 85 SUPERFAMILY SSF140129 8 81 1.83E-21 T 29-03-2018 Y880_RS05665 3c7dfa5a87bc9e0723d8e92cc982d439 85 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 13 85 5.4E-26 T 29-03-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 Y880_RS27565 7b0a65b362adae85e4cbbb69f8e57684 241 SMART SM00014 110 215 0.0052 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS27565 7b0a65b362adae85e4cbbb69f8e57684 241 Pfam PF01569 PAP2 superfamily 120 212 2.3E-12 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS27565 7b0a65b362adae85e4cbbb69f8e57684 241 Gene3D G3DSA:1.20.144.10 33 236 3.4E-29 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS27565 7b0a65b362adae85e4cbbb69f8e57684 241 SUPERFAMILY SSF48317 3 232 3.01E-34 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS27565 7b0a65b362adae85e4cbbb69f8e57684 241 PIRSF PIRSF000897 1 241 9.4E-69 T 29-03-2018 IPR011158 Nonspecific acid phosphatase, class A GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 Y880_RS26095 dc345c349d02eaa2f601eac17913cd50 53 PIRSF PIRSF036466 1 53 3.8E-24 T 29-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Y880_RS26095 dc345c349d02eaa2f601eac17913cd50 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 52 21.504 T 29-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Y880_RS26095 dc345c349d02eaa2f601eac17913cd50 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 9.0E-17 T 29-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Y880_RS17685 1c8b8c572e145ac1462cff449bca48c4 66 Pfam PF07869 Protein of unknown function (DUF1656) 4 58 1.1E-22 T 29-03-2018 IPR012451 Protein of unknown function DUF1656 Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 Gene3D G3DSA:3.40.50.720 4 238 2.6E-65 T 29-03-2018 Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 SUPERFAMILY SSF51735 4 235 6.13E-70 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 3.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 121 129 3.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 3.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 232 1.6E-50 T 29-03-2018 Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 1.1E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 131 1.1E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.1E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 1.1E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 1.1E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 1.1E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS19065 8bfa4146a0217477f8e2c936628d1342 238 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 171 0.0024 T 29-03-2018 Y880_RS07185 b1c0b62f8db310672706ac1f1914512f 450 Gene3D G3DSA:1.20.1250.20 237 447 7.0E-28 T 29-03-2018 Y880_RS07185 b1c0b62f8db310672706ac1f1914512f 450 Pfam PF07690 Major Facilitator Superfamily 29 396 1.4E-50 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS07185 b1c0b62f8db310672706ac1f1914512f 450 Gene3D G3DSA:1.20.1250.20 13 210 2.2E-38 T 29-03-2018 Y880_RS07185 b1c0b62f8db310672706ac1f1914512f 450 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y880_RS07185 b1c0b62f8db310672706ac1f1914512f 450 SUPERFAMILY SSF103473 10 433 1.05E-78 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 88 108 9.4E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 194 216 9.4E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 151 177 9.4E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 67 82 9.4E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 37 62 9.4E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 109 129 9.4E-33 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 SUPERFAMILY SSF55961 171 451 1.81E-56 T 29-03-2018 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 95 118 - T 29-03-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 SUPERFAMILY SSF50022 21 165 3.01E-47 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 TIGRFAM TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit 15 452 7.2E-297 T 29-03-2018 IPR017638 Anthranilate 1,2-dioxygenase, large subunit KEGG: 00627+1.14.12.1|MetaCyc: PWY-2421|MetaCyc: PWY-5648|MetaCyc: PWY-6079 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 Gene3D G3DSA:2.102.10.10 50 157 4.8E-26 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 Pfam PF00355 Rieske [2Fe-2S] domain 52 136 1.4E-22 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 Gene3D G3DSA:3.90.380.10 158 463 2.5E-61 T 29-03-2018 Y880_RS09910 25d2804551b2ad0b41e2649afa37f534 464 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 202 394 1.4E-9 T 29-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 Gene3D G3DSA:3.20.20.60 1 514 6.0E-128 T 29-03-2018 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 PIRSF PIRSF001362 1 278 8.5E-29 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 PIRSF PIRSF001362 290 410 9.4E-12 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 PIRSF PIRSF001362 412 531 7.2E-8 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 Pfam PF00463 Isocitrate lyase family 429 530 2.6E-13 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 Pfam PF00463 Isocitrate lyase family 81 269 3.2E-20 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 Pfam PF00463 Isocitrate lyase family 330 399 1.3E-9 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 SUPERFAMILY SSF51621 429 514 2.42E-124 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS10590 23c386e72bf88d768b21d31081ac26e1 531 SUPERFAMILY SSF51621 10 392 2.42E-124 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:3.40.50.10860 63 188 3.0E-55 T 29-03-2018 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 SUPERFAMILY SSF53223 4 194 2.81E-75 T 29-03-2018 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 370 381 6.6E-33 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 233 253 6.6E-33 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 112 126 6.6E-33 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 191 213 6.6E-33 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 200 443 4.3E-86 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:1.10.285.10 4 62 2.0E-8 T 29-03-2018 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:1.10.285.10 372 445 9.6E-29 T 29-03-2018 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:3.40.50.720 207 371 2.9E-45 T 29-03-2018 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 PIRSF PIRSF000185 20 445 5.4E-119 T 29-03-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 SUPERFAMILY SSF51735 200 444 8.74E-77 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 SMART SM00839 202 443 1.4E-91 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 55 183 4.4E-50 T 29-03-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS21280 18406430e477a6c77de8a5bcce1db1f0 445 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 120 133 - T 29-03-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 PRINTS PR00175 Sodium/alanine symporter signature 186 204 4.1E-53 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 PRINTS PR00175 Sodium/alanine symporter signature 93 115 4.1E-53 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 PRINTS PR00175 Sodium/alanine symporter signature 214 233 4.1E-53 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 PRINTS PR00175 Sodium/alanine symporter signature 353 375 4.1E-53 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 PRINTS PR00175 Sodium/alanine symporter signature 412 432 4.1E-53 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 PRINTS PR00175 Sodium/alanine symporter signature 309 327 4.1E-53 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 Pfam PF01235 Sodium:alanine symporter family 56 447 3.3E-141 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10030 4a1295c790a0d04e21603339162e50de 449 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 443 1.9E-148 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS10820 2c94d1da5d5513ba2f43ba914fc51dca 267 Pfam PF01061 ABC-2 type transporter 17 228 2.1E-31 T 29-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Y880_RS10820 2c94d1da5d5513ba2f43ba914fc51dca 267 PIRSF PIRSF006648 4 260 7.5E-15 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS10820 2c94d1da5d5513ba2f43ba914fc51dca 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 185 204 5.3E-8 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS10820 2c94d1da5d5513ba2f43ba914fc51dca 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 37 58 5.3E-8 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS10820 2c94d1da5d5513ba2f43ba914fc51dca 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 205 224 5.3E-8 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 Pfam PF13522 Glutamine amidotransferase domain 64 208 5.4E-15 T 29-03-2018 Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 464 44.742 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 464 1.0E-161 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 SUPERFAMILY SSF53271 250 483 1.27E-70 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 Gene3D G3DSA:3.60.20.10 2 257 6.1E-54 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 Pfam PF00156 Phosphoribosyl transferase domain 276 393 5.5E-9 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 SUPERFAMILY SSF56235 2 257 4.55E-70 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 Gene3D G3DSA:3.40.50.2020 275 444 2.2E-35 T 29-03-2018 Y880_RS13565 fb2c5dfe1b19287cf44507511e221891 501 PIRSF PIRSF000485 1 481 3.7E-159 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Y880_RS01475 374c208be7fa42f4b71b121ef3ea8695 312 Gene3D G3DSA:2.60.120.330 66 240 1.6E-42 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS01475 374c208be7fa42f4b71b121ef3ea8695 312 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 75 228 5.2E-47 T 29-03-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 Y880_RS01475 374c208be7fa42f4b71b121ef3ea8695 312 SUPERFAMILY SSF51197 105 227 3.02E-17 T 29-03-2018 Y880_RS24860 81bedff3115a0df85a8fb65e4d345d67 192 SUPERFAMILY SSF50182 104 179 4.58E-10 T 29-03-2018 IPR010920 LSM domain Y880_RS24860 81bedff3115a0df85a8fb65e4d345d67 192 SUPERFAMILY SSF82861 20 96 5.23E-6 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y880_RS24860 81bedff3115a0df85a8fb65e4d345d67 192 Gene3D G3DSA:2.30.30.60 119 179 1.4E-15 T 29-03-2018 Y880_RS24860 81bedff3115a0df85a8fb65e4d345d67 192 Pfam PF00924 Mechanosensitive ion channel 60 181 3.3E-14 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 Gene3D G3DSA:3.40.50.850 2 207 1.2E-46 T 29-03-2018 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 SUPERFAMILY SSF52499 3 207 6.67E-62 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 167 185 4.1E-58 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 3 15 4.1E-58 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 111 133 4.1E-58 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 79 98 4.1E-58 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 185 202 4.1E-58 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 62 79 4.1E-58 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 Pfam PF00857 Isochorismatase family 33 204 3.5E-35 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS06660 9a0c0fd485c1dae168d87bc25b177f75 207 PIRSF PIRSF001111 2 207 2.9E-94 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 Y880_RS02895 192172f69608d0f6b6c8dcf076e3919a 205 SUPERFAMILY SSF52499 4 200 4.06E-53 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS02895 192172f69608d0f6b6c8dcf076e3919a 205 Pfam PF00857 Isochorismatase family 14 164 5.1E-22 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS02895 192172f69608d0f6b6c8dcf076e3919a 205 Gene3D G3DSA:3.40.50.850 1 205 1.9E-42 T 29-03-2018 Y880_RS18710 8c3eda229ff97ac39fb8224e64ff259f 138 Gene3D G3DSA:3.10.129.10 1 136 6.1E-20 T 29-03-2018 Y880_RS18710 8c3eda229ff97ac39fb8224e64ff259f 138 Pfam PF03061 Thioesterase superfamily 45 121 8.7E-13 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS18710 8c3eda229ff97ac39fb8224e64ff259f 138 SUPERFAMILY SSF54637 7 132 6.08E-22 T 29-03-2018 IPR029069 HotDog domain Y880_RS05610 fbdd6f4145423d0856b5bbd22015dbb3 390 Gene3D G3DSA:1.20.5.50 257 388 3.8E-4 T 29-03-2018 Y880_RS05610 fbdd6f4145423d0856b5bbd22015dbb3 390 Pfam PF04888 Secretion system effector C (SseC) like family 111 385 8.6E-53 T 29-03-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 SMART SM00866 98 235 4.5E-27 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 Gene3D G3DSA:1.10.10.10 3 78 3.0E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 Pfam PF07702 UTRA domain 98 235 2.6E-31 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 2.7E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 SUPERFAMILY SSF46785 12 89 5.66E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 16 238 2.8E-50 T 29-03-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 SUPERFAMILY SSF64288 65 238 2.98E-39 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 2.7E-7 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 2.7E-7 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 SMART SM00345 20 77 5.1E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS15010 05c3614d8307d7f2d312d39b56fe3117 240 Gene3D G3DSA:3.40.1410.10 85 239 6.5E-36 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS11540 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 103 120 4.5E-28 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS11540 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 35 48 4.5E-28 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS11540 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 139 156 4.5E-28 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS11540 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 52 68 4.5E-28 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS11540 32ca18514bf0a173d37dfe0379732cf8 234 Pfam PF04333 MlaA lipoprotein 34 223 2.4E-77 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS15665 4ff9e77d11cdfac3ac14ad7413b8dd74 176 Gene3D G3DSA:2.60.120.10 2 170 6.1E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS15665 4ff9e77d11cdfac3ac14ad7413b8dd74 176 SUPERFAMILY SSF51182 2 172 6.14E-25 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS15665 4ff9e77d11cdfac3ac14ad7413b8dd74 176 Pfam PF07883 Cupin domain 82 151 1.1E-12 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS28615 6fae3454bad0a04400a814b3519c8ec6 98 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 8 88 2.1E-22 T 29-03-2018 IPR005228 Conserved hypothetical protein CHP00251 Y880_RS28615 6fae3454bad0a04400a814b3519c8ec6 98 Gene3D G3DSA:3.30.1200.10 1 96 1.6E-30 T 29-03-2018 IPR003746 Protein of unknown function DUF167 Y880_RS28615 6fae3454bad0a04400a814b3519c8ec6 98 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 81 8.6E-26 T 29-03-2018 IPR003746 Protein of unknown function DUF167 Y880_RS28615 6fae3454bad0a04400a814b3519c8ec6 98 SMART SM01152 7 83 3.7E-38 T 29-03-2018 IPR003746 Protein of unknown function DUF167 Y880_RS28615 6fae3454bad0a04400a814b3519c8ec6 98 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 95 20.444 T 29-03-2018 IPR003746 Protein of unknown function DUF167 Y880_RS28615 6fae3454bad0a04400a814b3519c8ec6 98 SUPERFAMILY SSF69786 2 91 4.19E-30 T 29-03-2018 IPR003746 Protein of unknown function DUF167 Y880_RS03675 fd330fc23689aa249103a2bc6bbdb695 137 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 2 131 1.7E-10 T 29-03-2018 IPR028973 PhnB-like Y880_RS03675 fd330fc23689aa249103a2bc6bbdb695 137 Gene3D G3DSA:3.10.180.10 7 137 8.6E-26 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS03675 fd330fc23689aa249103a2bc6bbdb695 137 SUPERFAMILY SSF54593 1 134 2.6E-38 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS08070 aedd0867b9315083987a503cdd63c064 258 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 84 114 - T 29-03-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 Y880_RS08070 aedd0867b9315083987a503cdd63c064 258 Gene3D G3DSA:3.40.50.1820 29 243 6.0E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS08070 aedd0867b9315083987a503cdd63c064 258 SUPERFAMILY SSF53474 4 238 3.95E-37 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS08070 aedd0867b9315083987a503cdd63c064 258 Pfam PF00326 Prolyl oligopeptidase family 48 239 1.8E-11 T 29-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 SMART SM00347 25 125 7.7E-24 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 SUPERFAMILY SSF46785 7 137 8.85E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 7 136 1.5E-61 T 29-03-2018 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 Pfam PF01047 MarR family 32 90 1.5E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 5.6E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 5.6E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 5.6E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS18925 2c54ecfd0cd8260a5d79acda80ea9c5f 140 Gene3D G3DSA:1.10.10.10 1 140 2.0E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14755 cb0e844a7902dd8985a7a3ebd81802ae 388 Gene3D G3DSA:1.20.1250.20 193 376 2.0E-16 T 29-03-2018 Y880_RS14755 cb0e844a7902dd8985a7a3ebd81802ae 388 Pfam PF07690 Major Facilitator Superfamily 10 310 8.4E-36 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS14755 cb0e844a7902dd8985a7a3ebd81802ae 388 Gene3D G3DSA:1.20.1250.20 3 192 7.3E-21 T 29-03-2018 Y880_RS14755 cb0e844a7902dd8985a7a3ebd81802ae 388 SUPERFAMILY SSF103473 3 373 6.02E-50 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03820 8a08b1daef3e82c755d942a01f94f019 577 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 10 569 3.3E-240 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y880_RS03820 8a08b1daef3e82c755d942a01f94f019 577 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 2 573 44.505 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y880_RS03820 8a08b1daef3e82c755d942a01f94f019 577 PIRSF PIRSF000719 1 577 2.5E-299 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y880_RS03820 8a08b1daef3e82c755d942a01f94f019 577 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 10 566 0.0 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 5 285 42.906 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 SUPERFAMILY SSF53328 92 284 3.53E-59 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 PIRSF PIRSF036480 5 285 1.2E-96 T 29-03-2018 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 Gene3D G3DSA:3.30.70.260 3 95 3.0E-11 T 29-03-2018 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 Gene3D G3DSA:3.40.50.170 96 285 1.6E-51 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 Pfam PF00551 Formyl transferase 91 266 6.3E-36 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 113 140 1.6E-43 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 91 113 1.6E-43 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 10 36 1.6E-43 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 54 1.6E-43 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 237 259 1.6E-43 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS25750 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 259 284 1.6E-43 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS10610 0603bd0c7e77b4f31eac8a17df317b83 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 88 175 1.1E-21 T 29-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10610 0603bd0c7e77b4f31eac8a17df317b83 225 SUPERFAMILY SSF56770 44 190 6.54E-64 T 29-03-2018 Y880_RS10610 0603bd0c7e77b4f31eac8a17df317b83 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 42.636 T 29-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10610 0603bd0c7e77b4f31eac8a17df317b83 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 29-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10610 0603bd0c7e77b4f31eac8a17df317b83 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 47 183 5.6E-68 T 29-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10610 0603bd0c7e77b4f31eac8a17df317b83 225 Gene3D G3DSA:3.40.50.700 37 206 2.5E-38 T 29-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS22195 2699994ded963183c12247d4b1983706 304 Gene3D G3DSA:3.30.2350.10 10 226 2.6E-85 T 29-03-2018 Y880_RS22195 2699994ded963183c12247d4b1983706 304 Gene3D G3DSA:2.30.130.10 244 304 2.4E-19 T 29-03-2018 IPR002478 PUA domain GO:0003723 Y880_RS22195 2699994ded963183c12247d4b1983706 304 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 302 19.341 T 29-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS22195 2699994ded963183c12247d4b1983706 304 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 242 3.1E-20 T 29-03-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 Y880_RS22195 2699994ded963183c12247d4b1983706 304 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 5.3E-57 T 29-03-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 Y880_RS22195 2699994ded963183c12247d4b1983706 304 SUPERFAMILY SSF55120 11 241 4.03E-84 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS22195 2699994ded963183c12247d4b1983706 304 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 246 302 2.7E-20 T 29-03-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS22195 2699994ded963183c12247d4b1983706 304 SUPERFAMILY SSF88697 245 303 4.97E-14 T 29-03-2018 IPR015947 PUA-like domain Y880_RS22195 2699994ded963183c12247d4b1983706 304 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 1.7E-80 T 29-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 29-03-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 SUPERFAMILY SSF116726 232 307 8.89E-10 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 Pfam PF03600 Citrate transporter 17 555 7.9E-58 T 29-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 Gene3D G3DSA:3.30.70.1450 322 398 2.4E-16 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 Gene3D G3DSA:3.30.70.1450 217 304 1.8E-13 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 SUPERFAMILY SSF116726 317 393 2.75E-17 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 Pfam PF02080 TrkA-C domain 232 300 2.3E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS17405 2499f8790541d26b4b2aae9b1fac1d55 610 Pfam PF02080 TrkA-C domain 326 392 4.0E-12 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y880_RS14480 0084a50f0e5534aa1c4bbddeeafa2e96 203 SUPERFAMILY SSF88659 119 194 5.98E-14 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS14480 0084a50f0e5534aa1c4bbddeeafa2e96 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 189 8.8E-24 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS14480 0084a50f0e5534aa1c4bbddeeafa2e96 203 Pfam PF04542 Sigma-70 region 2 24 90 2.1E-12 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS14480 0084a50f0e5534aa1c4bbddeeafa2e96 203 Gene3D G3DSA:1.10.10.10 131 201 9.3E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14480 0084a50f0e5534aa1c4bbddeeafa2e96 203 Pfam PF08281 Sigma-70, region 4 137 189 4.7E-11 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS14480 0084a50f0e5534aa1c4bbddeeafa2e96 203 Gene3D G3DSA:1.10.1740.10 1 130 5.8E-21 T 29-03-2018 Y880_RS14480 0084a50f0e5534aa1c4bbddeeafa2e96 203 SUPERFAMILY SSF88946 4 97 7.26E-23 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS19135 9b4c00158b737b3adb4be8cb3f13621d 136 Gene3D G3DSA:3.30.1330.40 1 131 1.6E-30 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS19135 9b4c00158b737b3adb4be8cb3f13621d 136 SUPERFAMILY SSF55298 9 130 1.57E-35 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS19135 9b4c00158b737b3adb4be8cb3f13621d 136 Pfam PF01042 Endoribonuclease L-PSP 13 127 2.5E-25 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family Y880_RS26515 9dadd1e6e5ceeff5a57ce01c758673be 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 2.0E-37 T 29-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Y880_RS26515 9dadd1e6e5ceeff5a57ce01c758673be 156 Gene3D G3DSA:1.20.5.620 62 122 1.4E-14 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain Y880_RS26515 9dadd1e6e5ceeff5a57ce01c758673be 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 4.9E-48 T 29-03-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 Y880_RS26515 9dadd1e6e5ceeff5a57ce01c758673be 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.008 T 29-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Y880_RS26515 9dadd1e6e5ceeff5a57ce01c758673be 156 SUPERFAMILY SSF81573 63 121 1.15E-14 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 Gene3D G3DSA:3.30.70.270 377 542 8.4E-53 T 29-03-2018 Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 374 536 2.1E-46 T 29-03-2018 IPR000160 GGDEF domain Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 Gene3D G3DSA:3.40.50.2300 246 376 4.6E-26 T 29-03-2018 Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 SMART SM00267 366 537 2.6E-55 T 29-03-2018 IPR000160 GGDEF domain Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 SMART SM00448 250 363 2.8E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 SUPERFAMILY SSF52172 246 378 7.26E-30 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 Pfam PF00072 Response regulator receiver domain 252 363 1.3E-21 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 Gene3D G3DSA:3.40.50.2300 123 245 4.9E-7 T 29-03-2018 Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 SUPERFAMILY SSF52172 134 243 3.22E-5 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 SUPERFAMILY SSF55073 382 539 5.49E-48 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS22730 daafc09914968fb23bbe6aca45e9a83f 542 Pfam PF00990 Diguanylate cyclase, GGDEF domain 379 533 3.3E-41 T 29-03-2018 IPR000160 GGDEF domain Y880_RS25540 358067f3f868811729db1db013ed01f4 312 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 281 1.1E-63 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Y880_RS25540 358067f3f868811729db1db013ed01f4 312 Gene3D G3DSA:3.40.190.10 156 312 3.8E-37 T 29-03-2018 Y880_RS25540 358067f3f868811729db1db013ed01f4 312 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 21 307 2.3E-149 T 29-03-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 Y880_RS25540 358067f3f868811729db1db013ed01f4 312 SUPERFAMILY SSF53850 21 298 3.53E-92 T 29-03-2018 Y880_RS25540 358067f3f868811729db1db013ed01f4 312 Gene3D G3DSA:3.40.190.10 21 155 3.6E-22 T 29-03-2018 Y880_RS07750 2e3d737e8fd990d5ea26c5417a1fc6e1 409 Gene3D G3DSA:2.40.160.10 30 409 3.6E-116 T 29-03-2018 Y880_RS07750 2e3d737e8fd990d5ea26c5417a1fc6e1 409 Pfam PF03573 outer membrane porin, OprD family 26 407 1.2E-144 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS12490 6d78f76237e9baafef15c2c3f51249f2 225 Pfam PF11760 Cobalamin synthesis G N-terminal 52 130 1.3E-23 T 29-03-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 Y880_RS12490 6d78f76237e9baafef15c2c3f51249f2 225 SUPERFAMILY SSF159672 8 212 5.75E-43 T 29-03-2018 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 Pfam PF02560 Cyanate lyase C-terminal domain 88 154 1.1E-31 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 Gene3D G3DSA:1.10.260.40 1 88 4.0E-10 T 29-03-2018 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 Hamap MF_00535 Cyanate hydratase [cynS]. 1 156 77.577 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 SUPERFAMILY SSF55234 88 155 2.09E-28 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 SUPERFAMILY SSF47413 2 85 3.44E-20 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 TIGRFAM TIGR00673 cynS: cyanase 4 156 1.4E-59 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 PIRSF PIRSF001263 3 156 9.9E-64 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 PRINTS PR01693 Cyanase signature 91 105 6.2E-35 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 PRINTS PR01693 Cyanase signature 141 151 6.2E-35 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 PRINTS PR01693 Cyanase signature 22 37 6.2E-35 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 PRINTS PR01693 Cyanase signature 42 59 6.2E-35 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 PRINTS PR01693 Cyanase signature 109 125 6.2E-35 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 SMART SM01116 83 156 1.7E-45 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS07430 f6dec2a6e4311baf192d5fc03b9c8cf2 156 Gene3D G3DSA:3.30.1160.10 89 155 7.1E-35 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y880_RS22605 63c7471362658a784d4c618712bcb472 120 Pfam PF04138 GtrA-like protein 5 119 3.3E-23 T 29-03-2018 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 Y880_RS06170 4835d815d401462563788a968ae9118f 339 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 8 45 6.1E-6 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Y880_RS06170 4835d815d401462563788a968ae9118f 339 SUPERFAMILY SSF161098 136 322 4.32E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS06170 4835d815d401462563788a968ae9118f 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 9.0E-28 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS06170 4835d815d401462563788a968ae9118f 339 Gene3D G3DSA:1.10.3720.10 9 328 4.9E-44 T 29-03-2018 Y880_RS03500 416b3018c2b7e3df8e10a412d5b11319 111 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 21 93 3.9E-17 T 29-03-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 Y880_RS03500 416b3018c2b7e3df8e10a412d5b11319 111 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 1.0E-33 T 29-03-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 Y880_RS06305 a12b767c3a1d27a9c1b3d2381a9c8910 145 Gene3D G3DSA:3.10.129.10 1 145 5.8E-25 T 29-03-2018 Y880_RS06305 a12b767c3a1d27a9c1b3d2381a9c8910 145 SUPERFAMILY SSF54637 1 142 8.71E-29 T 29-03-2018 IPR029069 HotDog domain Y880_RS06305 a12b767c3a1d27a9c1b3d2381a9c8910 145 Pfam PF14539 Domain of unknown function (DUF4442) 14 142 6.3E-52 T 29-03-2018 IPR027961 Protein of unknown function DUF4442 Y880_RS24135 508723a4d71bb1974cdaca8fd332ede0 194 Gene3D G3DSA:3.40.50.150 1 174 7.9E-16 T 29-03-2018 Y880_RS24135 508723a4d71bb1974cdaca8fd332ede0 194 SUPERFAMILY SSF53335 2 161 6.27E-24 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS24135 508723a4d71bb1974cdaca8fd332ede0 194 Pfam PF13649 Methyltransferase domain 32 124 5.4E-11 T 29-03-2018 Y880_RS11490 be80b287ad2328b55b04b1e0526d8571 643 SMART SM00710 254 276 240.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat Y880_RS11490 be80b287ad2328b55b04b1e0526d8571 643 SMART SM00710 346 367 5900.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat Y880_RS11490 be80b287ad2328b55b04b1e0526d8571 643 SMART SM00710 305 327 1900.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat Y880_RS11490 be80b287ad2328b55b04b1e0526d8571 643 SMART SM00710 282 304 2400.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat Y880_RS11490 be80b287ad2328b55b04b1e0526d8571 643 SMART SM00710 442 463 580.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat Y880_RS11490 be80b287ad2328b55b04b1e0526d8571 643 Gene3D G3DSA:2.160.20.10 163 546 6.9E-15 T 29-03-2018 IPR012334 Pectin lyase fold Y880_RS11490 be80b287ad2328b55b04b1e0526d8571 643 SUPERFAMILY SSF51126 170 367 1.22E-12 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor Y880_RS17160 aab417acf9dc182e837974359b2375e6 153 Pfam PF11162 Protein of unknown function (DUF2946) 12 149 2.0E-18 T 29-03-2018 IPR021333 Protein of unknown function DUF2946 Y880_RS29275 762f51db0907f9d276520ccde4611f38 119 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 42 109 1.0E-9 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29275 762f51db0907f9d276520ccde4611f38 119 Gene3D G3DSA:1.10.760.10 8 110 4.3E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29275 762f51db0907f9d276520ccde4611f38 119 SUPERFAMILY SSF46626 14 110 5.7E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS12780 ecedde3d1024357d12fc3cab3b29c258 377 Pfam PF00266 Aminotransferase class-V 16 348 2.8E-52 T 29-03-2018 IPR000192 Aminotransferase class V domain Y880_RS12780 ecedde3d1024357d12fc3cab3b29c258 377 Gene3D G3DSA:3.40.640.10 26 269 2.2E-42 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS12780 ecedde3d1024357d12fc3cab3b29c258 377 SUPERFAMILY SSF53383 7 374 7.98E-81 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS12780 ecedde3d1024357d12fc3cab3b29c258 377 Gene3D G3DSA:3.90.1150.10 270 377 1.7E-22 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS29665 d8f99861a3429e5a4e910672b8d4c49b 126 Hamap MF_00791 Protein ApaG [apaG]. 1 126 34.651 T 29-03-2018 IPR023065 Uncharacterised protein family ApaG Y880_RS29665 d8f99861a3429e5a4e910672b8d4c49b 126 Gene3D G3DSA:2.60.40.1470 1 126 1.9E-45 T 29-03-2018 IPR007474 ApaG domain Y880_RS29665 d8f99861a3429e5a4e910672b8d4c49b 126 Pfam PF04379 ApaG domain 18 102 6.3E-36 T 29-03-2018 IPR007474 ApaG domain Y880_RS29665 d8f99861a3429e5a4e910672b8d4c49b 126 SUPERFAMILY SSF110069 4 126 3.01E-50 T 29-03-2018 IPR007474 ApaG domain Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 SUPERFAMILY SSF47090 324 393 3.14E-14 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 Pfam PF01471 Putative peptidoglycan binding domain 339 393 6.3E-11 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 25 319 1.4E-110 T 29-03-2018 IPR011970 Lytic murein transglycosylase Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 Gene3D G3DSA:1.10.8.350 91 193 2.5E-30 T 29-03-2018 Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 Pfam PF13406 Transglycosylase SLT domain 25 316 8.5E-104 T 29-03-2018 IPR031304 Transglycosylase SLT domain 2 Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 Gene3D G3DSA:1.10.530.10 199 323 3.1E-36 T 29-03-2018 Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 Gene3D G3DSA:1.10.101.10 324 397 5.9E-12 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS02735 d93484b0e338f53bfc38ae1ba804271c 398 SUPERFAMILY SSF53955 10 322 1.05E-98 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS29230 35938772c9bcb371eb318f77be128595 592 SUPERFAMILY SSF47203 289 473 6.12E-47 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS29230 35938772c9bcb371eb318f77be128595 592 SUPERFAMILY SSF56645 38 281 8.51E-55 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Gene3D G3DSA:2.40.110.10 157 269 3.3E-24 T 29-03-2018 Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 2.1E-16 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 34 5.2E-12 T 29-03-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 2.5E-21 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 3.7E-10 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 585 5.2E-35 T 29-03-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Gene3D G3DSA:1.10.540.10 33 156 1.1E-14 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS29230 35938772c9bcb371eb318f77be128595 592 Gene3D G3DSA:1.20.140.10 270 470 3.4E-40 T 29-03-2018 Y880_RS25070 b69749103bfb67bb845d91e3afeaee2a 661 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 53 497 2.3E-163 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Y880_RS25070 b69749103bfb67bb845d91e3afeaee2a 661 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 15 496 4.0E-200 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Y880_RS25070 b69749103bfb67bb845d91e3afeaee2a 661 ProSitePatterns PS01303 BCCT family of transporters signature. 315 324 - T 29-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 PRINTS PR00069 Aldo-keto reductase signature 196 220 4.5E-17 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 PRINTS PR00069 Aldo-keto reductase signature 95 113 4.5E-17 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 PRINTS PR00069 Aldo-keto reductase signature 39 63 4.5E-17 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 PRINTS PR00069 Aldo-keto reductase signature 125 142 4.5E-17 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 Gene3D G3DSA:3.20.20.100 1 273 8.0E-81 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 PIRSF PIRSF000097 1 261 3.7E-36 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 SUPERFAMILY SSF51430 8 263 6.29E-79 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS00640 588a3e63bfba6b819a7b76a12c4ce8b4 273 Pfam PF00248 Aldo/keto reductase family 15 260 3.1E-54 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS16930 97319d34c8c025d500687e9b9f5f807e 174 Gene3D G3DSA:2.160.10.10 3 172 3.3E-43 T 29-03-2018 Y880_RS16930 97319d34c8c025d500687e9b9f5f807e 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 120 6.6E-9 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS16930 97319d34c8c025d500687e9b9f5f807e 174 SUPERFAMILY SSF51161 4 167 9.01E-48 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS28195 c59a8eb0c3572d5cfa8eeb2f8afad95f 164 Pfam PF04463 Protein of unknown function (DUF523) 4 149 8.2E-40 T 29-03-2018 IPR007553 Domain of unknown function DUF523 Y880_RS22845 7352886b5e3318d733e6ae147b81defa 172 Gene3D G3DSA:3.40.630.30 1 172 7.5E-38 T 29-03-2018 Y880_RS22845 7352886b5e3318d733e6ae147b81defa 172 Pfam PF13420 Acetyltransferase (GNAT) domain 5 157 1.0E-21 T 29-03-2018 Y880_RS22845 7352886b5e3318d733e6ae147b81defa 172 SUPERFAMILY SSF55729 5 169 4.97E-35 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS23295 8ec716aa5c43448ffb4c63b0f7a903fa 283 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 239 2.9E-9 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Y880_RS23295 8ec716aa5c43448ffb4c63b0f7a903fa 283 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 29-03-2018 IPR000540 Flagellar motor protein MotA, conserved site Y880_RS23295 8ec716aa5c43448ffb4c63b0f7a903fa 283 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 1.6E-113 T 29-03-2018 IPR022522 Flagellar motor stator, MotA Y880_RS06180 87016cd6735fd71ac28d9c91585f88b4 615 Gene3D G3DSA:3.90.76.10 66 206 3.2E-32 T 29-03-2018 Y880_RS06180 87016cd6735fd71ac28d9c91585f88b4 615 Gene3D G3DSA:3.10.105.10 320 563 5.7E-51 T 29-03-2018 Y880_RS06180 87016cd6735fd71ac28d9c91585f88b4 615 Gene3D G3DSA:3.40.190.10 207 319 8.9E-22 T 29-03-2018 Y880_RS06180 87016cd6735fd71ac28d9c91585f88b4 615 PIRSF PIRSF002741 17 596 3.3E-113 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y880_RS06180 87016cd6735fd71ac28d9c91585f88b4 615 SUPERFAMILY SSF53850 51 592 6.21E-128 T 29-03-2018 Y880_RS06180 87016cd6735fd71ac28d9c91585f88b4 615 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 102 508 2.9E-79 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain Y880_RS21180 bb1e8fc1bca56785e6bde5e2f7df390b 322 SUPERFAMILY SSF48576 5 321 2.02E-97 T 29-03-2018 IPR008949 Isoprenoid synthase domain Y880_RS21180 bb1e8fc1bca56785e6bde5e2f7df390b 322 Pfam PF00348 Polyprenyl synthetase 31 273 7.8E-71 T 29-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 Y880_RS21180 bb1e8fc1bca56785e6bde5e2f7df390b 322 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site Y880_RS21180 bb1e8fc1bca56785e6bde5e2f7df390b 322 Gene3D G3DSA:1.10.600.10 1 322 1.4E-99 T 29-03-2018 IPR008949 Isoprenoid synthase domain Y880_RS21180 bb1e8fc1bca56785e6bde5e2f7df390b 322 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site Y880_RS26320 d8964095ae6b02053a7f96847fc5df8d 70 Gene3D G3DSA:2.30.30.100 19 69 7.1E-15 T 29-03-2018 Y880_RS26320 d8964095ae6b02053a7f96847fc5df8d 70 SUPERFAMILY SSF50182 19 69 6.0E-12 T 29-03-2018 IPR010920 LSM domain Y880_RS26320 d8964095ae6b02053a7f96847fc5df8d 70 Pfam PF06004 Bacterial protein of unknown function (DUF903) 22 68 4.9E-16 T 29-03-2018 IPR010305 Protein of unknown function DUF903 Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 Pfam PF00691 OmpA family 178 273 7.4E-19 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 SUPERFAMILY SSF103088 149 278 5.89E-30 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 Gene3D G3DSA:3.30.1330.60 74 304 1.6E-30 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 242 261 7.3E-20 T 29-03-2018 Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 224 241 7.3E-20 T 29-03-2018 Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 39 57 7.3E-20 T 29-03-2018 Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 77 95 7.3E-20 T 29-03-2018 Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 116 138 7.3E-20 T 29-03-2018 Y880_RS15745 fca4a18ae965b2c885fff28d27c63872 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 262 282 7.3E-20 T 29-03-2018 Y880_RS27450 be95ae230cc5f23952efe472f3255553 278 SUPERFAMILY SSF111364 39 278 5.49E-76 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 Y880_RS27450 be95ae230cc5f23952efe472f3255553 278 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 64 278 6.1E-18 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 Y880_RS27450 be95ae230cc5f23952efe472f3255553 278 Gene3D G3DSA:2.40.230.20 31 275 2.8E-75 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 Y880_RS29245 43235cd2998837e5ccfdaaf72c1d09b6 387 TIGRFAM TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ 26 378 1.9E-186 T 29-03-2018 IPR023992 Heme D1 biosynthesis, radical SAM protein NirJ Y880_RS29245 43235cd2998837e5ccfdaaf72c1d09b6 387 Gene3D G3DSA:3.20.20.70 17 344 8.9E-51 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS29245 43235cd2998837e5ccfdaaf72c1d09b6 387 SMART SM00729 27 230 5.8E-4 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS29245 43235cd2998837e5ccfdaaf72c1d09b6 387 SUPERFAMILY SSF102114 23 351 2.09E-68 T 29-03-2018 Y880_RS29245 43235cd2998837e5ccfdaaf72c1d09b6 387 PIRSF PIRSF037420 13 386 1.1E-139 T 29-03-2018 Y880_RS29245 43235cd2998837e5ccfdaaf72c1d09b6 387 Pfam PF04055 Radical SAM superfamily 33 187 2.6E-25 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS29245 43235cd2998837e5ccfdaaf72c1d09b6 387 Pfam PF13353 4Fe-4S single cluster domain 28 138 2.5E-10 T 29-03-2018 Y880_RS08895 60964406ef2b0297d673ec90d1a2e6fa 295 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 17 288 2.7E-66 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y880_RS08895 60964406ef2b0297d673ec90d1a2e6fa 295 Gene3D G3DSA:3.60.130.10 11 295 7.3E-71 T 29-03-2018 Y880_RS08895 60964406ef2b0297d673ec90d1a2e6fa 295 SUPERFAMILY SSF51197 15 295 6.87E-88 T 29-03-2018 Y880_RS24075 05eb409e6f596aa80ff3d35be265e949 340 SUPERFAMILY SSF53850 27 334 7.06E-77 T 29-03-2018 Y880_RS24075 05eb409e6f596aa80ff3d35be265e949 340 Gene3D G3DSA:3.40.190.10 171 330 1.9E-28 T 29-03-2018 Y880_RS24075 05eb409e6f596aa80ff3d35be265e949 340 Gene3D G3DSA:3.40.190.10 24 170 9.5E-14 T 29-03-2018 Y880_RS24075 05eb409e6f596aa80ff3d35be265e949 340 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 32 318 1.9E-60 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Y880_RS22735 e5b2c9c2af8eb8a36abd5d44d5691458 657 SMART SM00283 395 656 3.1E-60 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS22735 e5b2c9c2af8eb8a36abd5d44d5691458 657 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 423 452 2.3E-6 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS22735 e5b2c9c2af8eb8a36abd5d44d5691458 657 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 522 551 2.3E-6 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS22735 e5b2c9c2af8eb8a36abd5d44d5691458 657 Gene3D G3DSA:1.10.287.950 225 424 1.3E-8 T 29-03-2018 Y880_RS22735 e5b2c9c2af8eb8a36abd5d44d5691458 657 SUPERFAMILY SSF58104 358 657 2.35E-66 T 29-03-2018 Y880_RS22735 e5b2c9c2af8eb8a36abd5d44d5691458 657 Gene3D G3DSA:1.10.287.950 425 621 1.8E-49 T 29-03-2018 Y880_RS22735 e5b2c9c2af8eb8a36abd5d44d5691458 657 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 469 622 3.4E-41 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS10785 02159889095d449624d7e5cc6afc9107 359 Pfam PF03934 Type II secretion system (T2SS), protein K 138 275 1.2E-6 T 29-03-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y880_RS10785 02159889095d449624d7e5cc6afc9107 359 Gene3D G3DSA:1.10.40.60 123 295 0.0029 T 29-03-2018 Y880_RS07800 a24b25155d1f8fa3b699eb44982d6702 142 Pfam PF12680 SnoaL-like domain 16 111 4.7E-9 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS07800 a24b25155d1f8fa3b699eb44982d6702 142 SUPERFAMILY SSF54427 10 118 6.86E-20 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS07800 a24b25155d1f8fa3b699eb44982d6702 142 Gene3D G3DSA:3.10.450.50 2 142 2.9E-24 T 29-03-2018 Y880_RS22485 dcb7bef4350f30d9a8c6a616b88601bf 155 SUPERFAMILY SSF51230 10 120 9.42E-23 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS22485 dcb7bef4350f30d9a8c6a616b88601bf 155 Gene3D G3DSA:2.40.50.100 13 138 8.7E-22 T 29-03-2018 Y880_RS22485 dcb7bef4350f30d9a8c6a616b88601bf 155 Pfam PF01597 Glycine cleavage H-protein 16 133 1.0E-23 T 29-03-2018 IPR033753 Glycine cleavage system H-protein/Simiate Y880_RS03825 072baebfea90446ae5f169acd66eaa4a 177 Pfam PF00583 Acetyltransferase (GNAT) family 43 143 2.7E-15 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS03825 072baebfea90446ae5f169acd66eaa4a 177 SUPERFAMILY SSF55729 1 169 1.28E-39 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS03825 072baebfea90446ae5f169acd66eaa4a 177 Gene3D G3DSA:3.40.630.30 1 173 2.0E-40 T 29-03-2018 Y880_RS04280 4685bde8b60744c54ea80a64c89dd426 262 Pfam PF13614 AAA domain 1 179 1.2E-41 T 29-03-2018 IPR025669 AAA domain Y880_RS04280 4685bde8b60744c54ea80a64c89dd426 262 Gene3D G3DSA:3.40.50.300 1 261 3.8E-50 T 29-03-2018 Y880_RS04280 4685bde8b60744c54ea80a64c89dd426 262 SUPERFAMILY SSF52540 1 255 7.15E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11235 0199b56d20d351e29ec6e43e0a7d0b44 77 Pfam PF12021 Protein of unknown function (DUF3509) 7 68 1.5E-11 T 29-03-2018 IPR021898 Protein of unknown function DUF3509 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 Pfam PF00425 chorismate binding enzyme 223 476 2.6E-97 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 484 1.4E-169 T 29-03-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 SUPERFAMILY SSF56322 14 485 3.66E-159 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 PRINTS PR00095 Anthranilate synthase component I signature 433 447 1.1E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 PRINTS PR00095 Anthranilate synthase component I signature 418 432 1.1E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 PRINTS PR00095 Anthranilate synthase component I signature 338 351 1.1E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 PRINTS PR00095 Anthranilate synthase component I signature 324 337 1.1E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 Gene3D G3DSA:3.60.120.10 13 486 1.5E-166 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS29755 3d76bf9986ac29c255e5559030a24788 492 Pfam PF04715 Anthranilate synthase component I, N terminal region 28 168 1.3E-32 T 29-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 180 320 5.9E-47 T 29-03-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 Gene3D G3DSA:3.40.50.720 1 179 1.7E-40 T 29-03-2018 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 322 35.44 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 Gene3D G3DSA:1.10.1040.10 180 330 2.2E-48 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 SUPERFAMILY SSF48179 180 331 1.55E-49 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 188 209 - T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 160 2.6E-51 T 29-03-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 133 153 1.2E-38 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 238 255 1.2E-38 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 198 222 1.2E-38 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 1.2E-38 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 173 197 1.2E-38 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 59 86 1.2E-38 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 PIRSF PIRSF000114 1 332 1.6E-107 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 Y880_RS05110 851c2c239906aafea80fc66d20dd21be 340 SUPERFAMILY SSF51735 7 178 2.12E-49 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 SUPERFAMILY SSF51735 4 231 3.14E-60 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 Gene3D G3DSA:3.40.50.720 2 176 4.3E-51 T 29-03-2018 Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.2E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.2E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.2E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.2E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.2E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 183 0.009 T 29-03-2018 Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 Pfam PF00106 short chain dehydrogenase 5 189 3.0E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23050 a1d68909b29bb75b6f83cb8bd7e33b31 253 Gene3D G3DSA:3.40.50.720 177 234 0.012 T 29-03-2018 Y880_RS26160 12f2fdd7821177358715af932b83da0b 316 Gene3D G3DSA:3.90.1200.10 105 315 1.6E-25 T 29-03-2018 Y880_RS26160 12f2fdd7821177358715af932b83da0b 316 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 303 1.0E-85 T 29-03-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Y880_RS26160 12f2fdd7821177358715af932b83da0b 316 Pfam PF01636 Phosphotransferase enzyme family 28 254 9.0E-37 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS26160 12f2fdd7821177358715af932b83da0b 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 146.652 T 29-03-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Y880_RS26160 12f2fdd7821177358715af932b83da0b 316 Gene3D G3DSA:3.30.200.20 1 102 8.4E-20 T 29-03-2018 Y880_RS26160 12f2fdd7821177358715af932b83da0b 316 SUPERFAMILY SSF56112 5 306 1.09E-67 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS08355 d340502c57998f58b0b3bdec4eefeb55 552 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 62 471 1.1E-58 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS08355 d340502c57998f58b0b3bdec4eefeb55 552 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 177 202 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS08355 d340502c57998f58b0b3bdec4eefeb55 552 Pfam PF00474 Sodium:solute symporter family 62 471 6.9E-103 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS24755 c0abed48450ec6b94379e5ff486ff328 374 Pfam PF12698 ABC-2 family transporter protein 28 363 1.4E-29 T 29-03-2018 Y880_RS24755 c0abed48450ec6b94379e5ff486ff328 374 Gene3D G3DSA:3.40.1710.10 40 190 7.9E-20 T 29-03-2018 Y880_RS04380 344b4fb50eafe68b05b12efef516797d 155 Pfam PF03918 Cytochrome C biogenesis protein 9 151 8.2E-57 T 29-03-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family Y880_RS23245 5684a283cd8e9ba9a6076879ff3cbce4 82 Gene3D G3DSA:2.30.30.100 4 73 5.6E-34 T 29-03-2018 Y880_RS23245 5684a283cd8e9ba9a6076879ff3cbce4 82 SUPERFAMILY SSF50182 7 69 2.31E-24 T 29-03-2018 IPR010920 LSM domain Y880_RS23245 5684a283cd8e9ba9a6076879ff3cbce4 82 Pfam PF17209 Hfq protein 7 69 1.8E-31 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Y880_RS23245 5684a283cd8e9ba9a6076879ff3cbce4 82 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 64 27.384 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Y880_RS23245 5684a283cd8e9ba9a6076879ff3cbce4 82 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 64 4.1E-30 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Y880_RS03100 47abeff0758305819b593b79681c44c6 590 Gene3D G3DSA:3.40.50.200 209 586 1.6E-35 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y880_RS03100 47abeff0758305819b593b79681c44c6 590 Pfam PF00082 Subtilase family 258 535 3.6E-21 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y880_RS03100 47abeff0758305819b593b79681c44c6 590 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 497 507 - T 29-03-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site Y880_RS03100 47abeff0758305819b593b79681c44c6 590 PIRSF PIRSF029389 1 590 0.0 T 29-03-2018 IPR016916 Uncharacterised conserved protein UCP029389, subtilisin-related Y880_RS03100 47abeff0758305819b593b79681c44c6 590 PRINTS PR00723 Subtilisin serine protease family (S8) signature 295 308 1.5E-6 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related Y880_RS03100 47abeff0758305819b593b79681c44c6 590 PRINTS PR00723 Subtilisin serine protease family (S8) signature 253 272 1.5E-6 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related Y880_RS03100 47abeff0758305819b593b79681c44c6 590 PRINTS PR00723 Subtilisin serine protease family (S8) signature 496 512 1.5E-6 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related Y880_RS03100 47abeff0758305819b593b79681c44c6 590 SUPERFAMILY SSF52743 242 539 3.14E-36 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y880_RS21470 ced2aa7246fb5de7e686405b9ebe9464 403 Gene3D G3DSA:1.20.1250.20 3 204 4.1E-21 T 29-03-2018 Y880_RS21470 ced2aa7246fb5de7e686405b9ebe9464 403 Gene3D G3DSA:1.20.1250.20 209 402 4.3E-11 T 29-03-2018 Y880_RS21470 ced2aa7246fb5de7e686405b9ebe9464 403 Pfam PF05977 Transmembrane secretion effector 9 389 4.0E-35 T 29-03-2018 IPR010290 Transmembrane secretion effector Y880_RS21470 ced2aa7246fb5de7e686405b9ebe9464 403 SUPERFAMILY SSF103473 5 399 1.12E-37 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS25605 efcc43d337b703620e18ad65dae82ca8 224 Gene3D G3DSA:3.60.20.10 1 216 7.3E-80 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS25605 efcc43d337b703620e18ad65dae82ca8 224 SUPERFAMILY SSF56235 1 224 4.24E-80 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS25605 efcc43d337b703620e18ad65dae82ca8 224 Pfam PF06267 Family of unknown function (DUF1028) 2 191 8.8E-69 T 29-03-2018 IPR010430 Protein of unknown function DUF1028 Y880_RS20275 0073a046f4d53029418143c562935a39 366 Pfam PF00990 Diguanylate cyclase, GGDEF domain 200 327 6.3E-12 T 29-03-2018 IPR000160 GGDEF domain Y880_RS20275 0073a046f4d53029418143c562935a39 366 SMART SM00267 187 355 2.3E-5 T 29-03-2018 IPR000160 GGDEF domain Y880_RS20275 0073a046f4d53029418143c562935a39 366 Gene3D G3DSA:3.30.70.270 195 361 7.9E-18 T 29-03-2018 Y880_RS20275 0073a046f4d53029418143c562935a39 366 Pfam PF00072 Response regulator receiver domain 53 167 2.1E-21 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS20275 0073a046f4d53029418143c562935a39 366 SUPERFAMILY SSF52172 50 193 2.28E-28 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS20275 0073a046f4d53029418143c562935a39 366 SUPERFAMILY SSF55073 203 355 7.53E-12 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS20275 0073a046f4d53029418143c562935a39 366 SMART SM00448 51 167 1.1E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS20275 0073a046f4d53029418143c562935a39 366 Gene3D G3DSA:3.40.50.2300 46 194 3.1E-26 T 29-03-2018 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 SUPERFAMILY SSF46689 210 257 3.36E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 Gene3D G3DSA:2.60.120.280 14 160 1.2E-10 T 29-03-2018 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 SMART SM00342 172 253 1.2E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 Pfam PF02311 AraC-like ligand binding domain 24 109 3.4E-7 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 Gene3D G3DSA:1.10.10.60 208 259 9.6E-12 T 29-03-2018 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 Gene3D G3DSA:1.10.10.60 161 207 3.7E-10 T 29-03-2018 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 SUPERFAMILY SSF51182 14 177 2.96E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 249 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS01075 61d299c1fcfa62a00e75e67173497747 262 Pfam PF12833 Helix-turn-helix domain 178 254 8.0E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 133 221 2.6E-8 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 PIRSF PIRSF016578 144 394 7.0E-24 T 29-03-2018 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 PIRSF PIRSF016578 5 93 4.3E-11 T 29-03-2018 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 SUPERFAMILY SSF47203 241 386 2.58E-15 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 Gene3D G3DSA:2.40.110.10 132 231 7.6E-18 T 29-03-2018 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 248 384 9.2E-17 T 29-03-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 103 4.9E-6 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 Gene3D G3DSA:1.20.140.10 232 410 2.5E-21 T 29-03-2018 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 Gene3D G3DSA:1.10.540.10 12 131 4.2E-14 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS08965 588c94c5449f3dd10bc3a708bd344e7a 419 SUPERFAMILY SSF56645 28 230 1.09E-43 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS26900 7f7da6c75724dcc9010fadda7959ef22 234 Gene3D G3DSA:3.40.30.10 2 216 4.2E-29 T 29-03-2018 Y880_RS26900 7f7da6c75724dcc9010fadda7959ef22 234 SUPERFAMILY SSF52833 4 210 2.38E-30 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS26900 7f7da6c75724dcc9010fadda7959ef22 234 Pfam PF01323 DSBA-like thioredoxin domain 10 187 1.6E-6 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 Y880_RS12240 40aa9dae86fed95edb58810e7b0d0388 323 Gene3D G3DSA:2.40.440.10 92 232 9.3E-30 T 29-03-2018 Y880_RS12240 40aa9dae86fed95edb58810e7b0d0388 323 Gene3D G3DSA:3.10.350.10 38 86 0.001 T 29-03-2018 Y880_RS12240 40aa9dae86fed95edb58810e7b0d0388 323 SUPERFAMILY SSF141523 96 230 4.32E-31 T 29-03-2018 Y880_RS12240 40aa9dae86fed95edb58810e7b0d0388 323 Pfam PF03734 L,D-transpeptidase catalytic domain 98 230 9.1E-16 T 29-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Y880_RS20630 22d0913c307e340da25028e7b7738e13 286 PIRSF PIRSF005052 1 286 8.3E-115 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 Y880_RS20630 22d0913c307e340da25028e7b7738e13 286 SUPERFAMILY SSF52540 1 154 1.88E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS20630 22d0913c307e340da25028e7b7738e13 286 Gene3D G3DSA:3.40.50.300 1 158 4.2E-11 T 29-03-2018 Y880_RS20630 22d0913c307e340da25028e7b7738e13 286 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 286 40.437 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 Y880_RS20630 22d0913c307e340da25028e7b7738e13 286 Pfam PF03668 P-loop ATPase protein family 1 285 9.3E-95 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 Y880_RS11600 bfa4f84708627c67d646502368d49664 310 SMART SM00382 30 213 4.1E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS11600 bfa4f84708627c67d646502368d49664 310 Pfam PF00005 ABC transporter 21 165 8.4E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS11600 bfa4f84708627c67d646502368d49664 310 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS11600 bfa4f84708627c67d646502368d49664 310 Gene3D G3DSA:3.40.50.300 1 267 4.6E-65 T 29-03-2018 Y880_RS11600 bfa4f84708627c67d646502368d49664 310 SUPERFAMILY SSF52540 4 234 8.88E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23970 29045eec34b95bf2d0a0a614f2753231 299 Gene3D G3DSA:3.40.190.10 167 299 1.5E-17 T 29-03-2018 Y880_RS23970 29045eec34b95bf2d0a0a614f2753231 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 268 6.6E-51 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23970 29045eec34b95bf2d0a0a614f2753231 299 SUPERFAMILY SSF53850 1 271 2.93E-66 T 29-03-2018 Y880_RS23970 29045eec34b95bf2d0a0a614f2753231 299 SMART SM00062 37 270 1.7E-65 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23970 29045eec34b95bf2d0a0a614f2753231 299 Gene3D G3DSA:3.40.190.10 1 166 1.4E-30 T 29-03-2018 Y880_RS06910 f111b5ed1181faadde3281a996a4e54d 421 Pfam PF13557 Putative MetA-pathway of phenol degradation 213 417 3.8E-6 T 29-03-2018 IPR025737 MetA-pathway of phenol degradation, putative Y880_RS06910 f111b5ed1181faadde3281a996a4e54d 421 Gene3D G3DSA:2.40.128.130 85 388 4.4E-12 T 29-03-2018 Y880_RS06910 f111b5ed1181faadde3281a996a4e54d 421 Gene3D G3DSA:1.20.120.330 15 84 5.8E-4 T 29-03-2018 Y880_RS06860 21b8d7eea9e311165f4a47c555353e27 631 Gene3D G3DSA:1.10.760.10 98 293 0.018 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS06860 21b8d7eea9e311165f4a47c555353e27 631 Gene3D G3DSA:1.10.760.10 350 613 9.6E-28 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS06860 21b8d7eea9e311165f4a47c555353e27 631 SUPERFAMILY SSF46626 480 524 1.27E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS06860 21b8d7eea9e311165f4a47c555353e27 631 SUPERFAMILY SSF46626 351 409 1.27E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS06860 21b8d7eea9e311165f4a47c555353e27 631 SUPERFAMILY SSF46626 576 599 1.27E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25855 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Pfam PF01380 SIS domain 125 252 8.1E-16 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS25855 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 SUPERFAMILY SSF46689 2 76 2.87E-20 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25855 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Gene3D G3DSA:1.10.10.10 1 94 5.9E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25855 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Gene3D G3DSA:3.40.50.10490 95 290 9.2E-32 T 29-03-2018 Y880_RS25855 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 ProSitePatterns PS00356 LacI-type HTH domain signature. 37 55 - T 29-03-2018 Y880_RS25855 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 76 2.8E-24 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Y880_RS25855 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 SUPERFAMILY SSF53697 84 278 2.43E-37 T 29-03-2018 Y880_RS08405 b3c973e2ddb0a41710c856134c9c691c 295 SUPERFAMILY SSF51197 17 262 5.68E-46 T 29-03-2018 Y880_RS08405 b3c973e2ddb0a41710c856134c9c691c 295 Gene3D G3DSA:2.60.120.620 4 238 6.5E-35 T 29-03-2018 Y880_RS08405 b3c973e2ddb0a41710c856134c9c691c 295 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 23 221 3.0E-40 T 29-03-2018 IPR008775 Phytanoyl-CoA dioxygenase Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 355 369 2.2E-22 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 68 87 2.2E-22 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 370 384 2.2E-22 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 432 445 2.2E-22 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 295 317 2.2E-22 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 SUPERFAMILY SSF56601 27 469 2.17E-92 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 62 454 3.5E-65 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 30 454 2.8E-86 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y880_RS13245 aaad9b07b627a94bce6a7d2f549adbbe 476 Gene3D G3DSA:3.40.710.10 24 475 9.1E-41 T 29-03-2018 Y880_RS22165 a4308ea1b967e7db85d908d3f3bbbcf5 104 Pfam PF11006 Protein of unknown function (DUF2845) 25 100 6.3E-22 T 29-03-2018 IPR021268 Protein of unknown function DUF2845 Y880_RS08805 27a0f188822cc9ebd476d175ea233af5 93 Pfam PF06155 Protein of unknown function (DUF971) 11 90 5.7E-22 T 29-03-2018 IPR010376 Domain of unknown function DUF971 Reactome: R-HSA-71262 Y880_RS14890 07c11bbfd31944e916a9aae7a636e574 115 PIRSF PIRSF029595 1 115 3.2E-65 T 29-03-2018 IPR016927 Lectin, sugar-binding Y880_RS14890 07c11bbfd31944e916a9aae7a636e574 115 Pfam PF07472 Fucose-binding lectin II (PA-IIL) 7 114 3.7E-46 T 29-03-2018 IPR010907 Calcium-mediated lectin Y880_RS14890 07c11bbfd31944e916a9aae7a636e574 115 Gene3D G3DSA:2.60.120.400 5 112 5.6E-37 T 29-03-2018 Y880_RS14890 07c11bbfd31944e916a9aae7a636e574 115 SUPERFAMILY SSF82026 3 115 1.19E-46 T 29-03-2018 IPR010907 Calcium-mediated lectin Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 270 281 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 Pfam PF12801 4Fe-4S binding domain 93 125 1.0E-5 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 39 468 7.4E-177 T 29-03-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 Gene3D G3DSA:2.60.40.10 352 469 1.8E-26 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 SUPERFAMILY SSF54862 103 125 7.53E-32 T 29-03-2018 Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 SUPERFAMILY SSF54862 172 352 7.53E-32 T 29-03-2018 Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 Gene3D G3DSA:3.30.70.20 273 283 0.15 T 29-03-2018 Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 Gene3D G3DSA:3.30.70.20 284 325 0.0018 T 29-03-2018 Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 Pfam PF13746 4Fe-4S dicluster domain 217 322 1.2E-45 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 352 468 5.7E-27 T 29-03-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain Y880_RS04770 523296e87c36413c827d03aa1db6acd4 471 Gene3D G3DSA:3.30.70.20 220 272 6.5E-12 T 29-03-2018 Y880_RS09020 3c9f2566f6234f36287d9a19c4f05467 789 Gene3D G3DSA:2.170.130.10 50 190 2.2E-25 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS09020 3c9f2566f6234f36287d9a19c4f05467 789 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 772 789 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS09020 3c9f2566f6234f36287d9a19c4f05467 789 Pfam PF07715 TonB-dependent Receptor Plug Domain 74 180 3.5E-15 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS09020 3c9f2566f6234f36287d9a19c4f05467 789 Gene3D G3DSA:2.40.170.20 191 789 8.5E-73 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS09020 3c9f2566f6234f36287d9a19c4f05467 789 Pfam PF00593 TonB dependent receptor 311 787 2.0E-34 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS09020 3c9f2566f6234f36287d9a19c4f05467 789 SUPERFAMILY SSF56935 52 789 8.79E-117 T 29-03-2018 Y880_RS08720 c8db6f1030157a88ecc708964e33729b 296 SUPERFAMILY SSF46689 191 242 6.53E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08720 c8db6f1030157a88ecc708964e33729b 296 Pfam PF06719 AraC-type transcriptional regulator N-terminus 26 179 1.1E-43 T 29-03-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal Y880_RS08720 c8db6f1030157a88ecc708964e33729b 296 Gene3D G3DSA:1.10.10.60 191 246 1.0E-12 T 29-03-2018 Y880_RS08720 c8db6f1030157a88ecc708964e33729b 296 SUPERFAMILY SSF46689 244 291 3.67E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS08720 c8db6f1030157a88ecc708964e33729b 296 SMART SM00342 208 291 7.7E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS08720 c8db6f1030157a88ecc708964e33729b 296 Gene3D G3DSA:1.10.10.60 247 296 2.5E-12 T 29-03-2018 Y880_RS08720 c8db6f1030157a88ecc708964e33729b 296 Pfam PF12833 Helix-turn-helix domain 214 289 8.9E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS28345 9251c75ec8c0c653be90aac72eead842 251 Pfam PF05742 Transport and Golgi organisation 2 1 234 6.3E-57 T 29-03-2018 IPR008551 Transport and Golgi organisation protein 2 Y880_RS25350 50a3ad202b6ad97ec6da1badcf459997 469 Pfam PF04073 Aminoacyl-tRNA editing domain 30 142 4.2E-16 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS25350 50a3ad202b6ad97ec6da1badcf459997 469 SUPERFAMILY SSF55826 19 145 8.63E-13 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS25350 50a3ad202b6ad97ec6da1badcf459997 469 Gene3D G3DSA:3.90.960.10 9 151 9.4E-9 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS25350 50a3ad202b6ad97ec6da1badcf459997 469 Gene3D G3DSA:1.10.3210.10 168 463 1.5E-32 T 29-03-2018 Y880_RS25350 50a3ad202b6ad97ec6da1badcf459997 469 SUPERFAMILY SSF109604 180 452 4.08E-61 T 29-03-2018 Y880_RS25350 50a3ad202b6ad97ec6da1badcf459997 469 PIRSF PIRSF036888 1 466 5.6E-281 T 29-03-2018 IPR014627 Uncharacterised conserved protein UCP036888, signal transduction HD-GYP-like, PA5346 type Y880_RS25350 50a3ad202b6ad97ec6da1badcf459997 469 Pfam PF08668 HDOD domain 195 395 2.4E-45 T 29-03-2018 IPR013976 Metal-dependent hydrolase HDOD Y880_RS20705 b48ea349736dabff3537102bf28a2b36 269 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 5 269 5.7E-63 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Y880_RS20705 b48ea349736dabff3537102bf28a2b36 269 Pfam PF04085 rod shape-determining protein MreC 124 269 3.4E-38 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Y880_RS20705 b48ea349736dabff3537102bf28a2b36 269 PIRSF PIRSF038471 2 269 8.4E-76 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Y880_RS18260 9937c0ece1b69844aac6fbd8168be899 646 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 236 8.1E-47 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y880_RS18260 9937c0ece1b69844aac6fbd8168be899 646 SUPERFAMILY SSF56601 251 607 1.59E-102 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS18260 9937c0ece1b69844aac6fbd8168be899 646 SUPERFAMILY SSF56519 56 250 4.19E-53 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y880_RS18260 9937c0ece1b69844aac6fbd8168be899 646 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 607 1.7E-237 T 29-03-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0016020 Y880_RS18260 9937c0ece1b69844aac6fbd8168be899 646 Gene3D G3DSA:3.90.1310.10 33 246 3.2E-55 T 29-03-2018 Y880_RS18260 9937c0ece1b69844aac6fbd8168be899 646 Gene3D G3DSA:3.40.710.10 247 613 1.2E-96 T 29-03-2018 Y880_RS18260 9937c0ece1b69844aac6fbd8168be899 646 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 604 3.5E-75 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y880_RS09750 72b26b82cdbe2617d6fcd8f6b1311883 217 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 28 102 3.3E-6 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09750 72b26b82cdbe2617d6fcd8f6b1311883 217 Pfam PF00034 Cytochrome c 141 210 9.9E-6 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09750 72b26b82cdbe2617d6fcd8f6b1311883 217 SUPERFAMILY SSF46626 125 210 8.08E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09750 72b26b82cdbe2617d6fcd8f6b1311883 217 PIRSF PIRSF000005 1 212 1.1E-65 T 29-03-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Y880_RS09750 72b26b82cdbe2617d6fcd8f6b1311883 217 SUPERFAMILY SSF46626 21 103 2.07E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09750 72b26b82cdbe2617d6fcd8f6b1311883 217 Gene3D G3DSA:1.10.760.10 114 210 5.6E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09750 72b26b82cdbe2617d6fcd8f6b1311883 217 Gene3D G3DSA:1.10.760.10 14 108 2.7E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS27405 faef8e92bd224e035155fddb45eedcfe 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 270 1.5E-16 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS27405 faef8e92bd224e035155fddb45eedcfe 383 Gene3D G3DSA:1.10.287.470 125 168 3.7E-12 T 29-03-2018 Y880_RS27405 faef8e92bd224e035155fddb45eedcfe 383 SUPERFAMILY SSF111369 57 285 3.4E-25 T 29-03-2018 Y880_RS27405 faef8e92bd224e035155fddb45eedcfe 383 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 362 2.0E-69 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS27405 faef8e92bd224e035155fddb45eedcfe 383 Gene3D G3DSA:2.40.50.100 67 124 2.3E-17 T 29-03-2018 Y880_RS27405 faef8e92bd224e035155fddb45eedcfe 383 Gene3D G3DSA:2.40.50.100 169 366 0.0011 T 29-03-2018 Y880_RS06010 787f31e590fe7ea257c42f5f291aae53 231 SUPERFAMILY SSF49899 2 230 7.91E-74 T 29-03-2018 IPR013320 Concanavalin A-like lectin/glucanase domain Y880_RS06010 787f31e590fe7ea257c42f5f291aae53 231 Gene3D G3DSA:2.60.120.200 2 231 4.0E-63 T 29-03-2018 Y880_RS06010 787f31e590fe7ea257c42f5f291aae53 231 Pfam PF08787 Alginate lyase 2 230 4.9E-61 T 29-03-2018 IPR014895 Alginate lyase 2 Y880_RS12200 c534999562cfb529f0cb93004c7cc5f6 249 Pfam PF01925 Sulfite exporter TauE/SafE 8 243 5.0E-45 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y880_RS23340 ea98befdc42db1721fcf9851d40fe1a7 178 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 5 166 9.5E-30 T 29-03-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Y880_RS27470 d296b92d80a4395361cd5de924acda27 235 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 57 219 3.1E-49 T 29-03-2018 IPR000160 GGDEF domain Y880_RS27470 d296b92d80a4395361cd5de924acda27 235 SUPERFAMILY SSF55073 65 219 6.28E-46 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS27470 d296b92d80a4395361cd5de924acda27 235 SMART SM00267 49 220 2.6E-56 T 29-03-2018 IPR000160 GGDEF domain Y880_RS27470 d296b92d80a4395361cd5de924acda27 235 Pfam PF00990 Diguanylate cyclase, GGDEF domain 61 215 4.1E-45 T 29-03-2018 IPR000160 GGDEF domain Y880_RS27470 d296b92d80a4395361cd5de924acda27 235 Gene3D G3DSA:3.30.70.270 43 221 1.0E-53 T 29-03-2018 Y880_RS14625 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 Gene3D G3DSA:3.40.720.10 231 533 1.9E-22 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS14625 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 Pfam PF08019 Domain of unknown function (DUF1705) 59 209 7.6E-49 T 29-03-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Y880_RS14625 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 Pfam PF00884 Sulfatase 240 529 2.6E-54 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS14625 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 SUPERFAMILY SSF53649 237 532 8.34E-20 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS15655 bc665b8c99b35601232ede1fb84be84a 277 Pfam PF09339 IclR helix-turn-helix domain 16 66 3.6E-13 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS15655 bc665b8c99b35601232ede1fb84be84a 277 Gene3D G3DSA:3.30.450.40 77 260 6.6E-44 T 29-03-2018 IPR029016 GAF domain-like Y880_RS15655 bc665b8c99b35601232ede1fb84be84a 277 SUPERFAMILY SSF55781 77 257 9.16E-43 T 29-03-2018 IPR029016 GAF domain-like Y880_RS15655 bc665b8c99b35601232ede1fb84be84a 277 SMART SM00346 13 101 2.9E-26 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS15655 bc665b8c99b35601232ede1fb84be84a 277 SUPERFAMILY SSF46785 13 84 9.62E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15655 bc665b8c99b35601232ede1fb84be84a 277 Pfam PF01614 Bacterial transcriptional regulator 131 253 9.2E-19 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS15655 bc665b8c99b35601232ede1fb84be84a 277 Gene3D G3DSA:1.10.10.10 1 72 3.2E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 87 160 1.1E-24 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 Gene3D G3DSA:2.160.20.10 46 347 4.5E-56 T 29-03-2018 IPR012334 Pectin lyase fold Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 Pfam PF07581 The GLUG motif 1064 1087 0.0019 T 29-03-2018 IPR011493 GLUG Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 Pfam PF07581 The GLUG motif 1035 1060 0.0023 T 29-03-2018 IPR011493 GLUG Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 Pfam PF07581 The GLUG motif 1209 1234 1.7E-5 T 29-03-2018 IPR011493 GLUG Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 Pfam PF07581 The GLUG motif 1121 1147 0.0025 T 29-03-2018 IPR011493 GLUG Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 Pfam PF05860 haemagglutination activity domain 53 164 3.8E-28 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 SUPERFAMILY SSF51126 45 339 3.45E-49 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 2.3E-8 T 29-03-2018 IPR024973 ESPR domain Y880_RS21020 27cee40a775c0acd37dd23fed8ca86d0 1417 SMART SM00912 51 165 4.0E-45 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y880_RS03995 803b0a127d234bfe9d14931b78edc4f2 252 SUPERFAMILY SSF81301 40 118 9.12E-12 T 29-03-2018 Y880_RS03995 803b0a127d234bfe9d14931b78edc4f2 252 Pfam PF01909 Nucleotidyltransferase domain 40 78 2.1E-5 T 29-03-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Y880_RS03995 803b0a127d234bfe9d14931b78edc4f2 252 Gene3D G3DSA:3.30.460.10 12 135 3.5E-16 T 29-03-2018 Y880_RS23815 3974c7774f7d6094cb9f4a803c30daf9 231 Pfam PF05036 Sporulation related domain 152 222 3.3E-16 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 Y880_RS23815 3974c7774f7d6094cb9f4a803c30daf9 231 SUPERFAMILY SSF110997 152 225 3.14E-17 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 Y880_RS23815 3974c7774f7d6094cb9f4a803c30daf9 231 Gene3D G3DSA:3.30.70.1070 149 228 1.2E-15 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 6.6E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 6.6E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 6.6E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 6.6E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 6.6E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 6.6E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 Gene3D G3DSA:3.40.50.720 10 254 6.4E-67 T 29-03-2018 Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 SUPERFAMILY SSF51735 9 248 4.74E-75 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 248 6.9E-68 T 29-03-2018 Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS13555 b3d000b85399d0b05d42b4d916c24801 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 Gene3D G3DSA:3.40.50.720 1 160 6.1E-30 T 29-03-2018 Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 155 6.6E-34 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 29-03-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 3.5E-18 T 29-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 Gene3D G3DSA:1.10.1040.10 161 290 1.1E-22 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 SUPERFAMILY SSF48179 165 287 1.08E-25 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 PIRSF PIRSF000103 1 290 3.4E-75 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y880_RS08205 231138eef4083abd5ef87c74c57496eb 291 SUPERFAMILY SSF51735 1 159 5.17E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 SMART SM01134 73 234 7.0E-60 T 29-03-2018 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 10 44 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 SUPERFAMILY SSF100950 77 234 2.51E-31 T 29-03-2018 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 42 60 2.7E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 28 42 2.7E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 Gene3D G3DSA:3.40.50.1360 68 241 9.6E-35 T 29-03-2018 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 Pfam PF08220 DeoR-like helix-turn-helix domain 10 61 9.6E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 Pfam PF00455 DeoR C terminal sensor domain 79 233 5.0E-44 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 SUPERFAMILY SSF46785 8 65 2.02E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 SMART SM00420 10 62 9.0E-14 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y880_RS26475 3c1bf021603d51e9ecb0022ecf91bd19 257 Gene3D G3DSA:1.10.10.10 3 64 1.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12115 17e8844812d8c4de75793de330b794ea 291 Hamap MF_00188 Protease HtpX [htpX]. 1 289 25.075 T 29-03-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 Y880_RS12115 17e8844812d8c4de75793de330b794ea 291 Pfam PF01435 Peptidase family M48 77 288 1.7E-37 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y880_RS12115 17e8844812d8c4de75793de330b794ea 291 Gene3D G3DSA:3.30.2010.10 67 160 8.3E-21 T 29-03-2018 Y880_RS10010 f429cf65c526805e8fa9bb59baa8192e 441 Pfam PF01523 Putative modulator of DNA gyrase 28 301 2.0E-28 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS10010 f429cf65c526805e8fa9bb59baa8192e 441 SUPERFAMILY SSF111283 1 440 1.01E-73 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS10010 f429cf65c526805e8fa9bb59baa8192e 441 Gene3D G3DSA:3.30.2290.10 1 236 8.7E-19 T 29-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain Y880_RS01160 138366a35852300a428680a0eedf8176 275 Gene3D G3DSA:3.10.129.10 8 155 1.4E-17 T 29-03-2018 Y880_RS01160 138366a35852300a428680a0eedf8176 275 SUPERFAMILY SSF54637 168 260 1.72E-13 T 29-03-2018 IPR029069 HotDog domain Y880_RS01160 138366a35852300a428680a0eedf8176 275 Pfam PF13452 N-terminal half of MaoC dehydratase 18 133 1.4E-8 T 29-03-2018 Y880_RS01160 138366a35852300a428680a0eedf8176 275 Gene3D G3DSA:3.10.129.10 156 273 1.8E-17 T 29-03-2018 Y880_RS01160 138366a35852300a428680a0eedf8176 275 SUPERFAMILY SSF54637 58 147 3.27E-8 T 29-03-2018 IPR029069 HotDog domain Y880_RS28710 4ee9ba721d1293396a13e430b5b1023b 178 Pfam PF01584 CheW-like domain 38 169 7.0E-27 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28710 4ee9ba721d1293396a13e430b5b1023b 178 SMART SM00260 32 168 2.1E-29 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28710 4ee9ba721d1293396a13e430b5b1023b 178 Gene3D G3DSA:2.30.30.40 118 160 6.4E-4 T 29-03-2018 Y880_RS28710 4ee9ba721d1293396a13e430b5b1023b 178 SUPERFAMILY SSF50341 33 170 3.79E-28 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS28710 4ee9ba721d1293396a13e430b5b1023b 178 Gene3D G3DSA:2.40.50.180 53 117 1.2E-17 T 29-03-2018 Y880_RS04575 3f139dbe93d422914872dc91025858da 258 SUPERFAMILY SSF46785 20 88 1.14E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04575 3f139dbe93d422914872dc91025858da 258 SUPERFAMILY SSF48008 90 218 8.11E-28 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS04575 3f139dbe93d422914872dc91025858da 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 84 4.2E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS04575 3f139dbe93d422914872dc91025858da 258 Gene3D G3DSA:1.20.120.530 82 232 4.2E-30 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS04575 3f139dbe93d422914872dc91025858da 258 Gene3D G3DSA:1.10.10.10 6 81 9.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04575 3f139dbe93d422914872dc91025858da 258 Pfam PF07729 FCD domain 94 216 5.2E-23 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS04575 3f139dbe93d422914872dc91025858da 258 SMART SM00895 94 217 8.8E-21 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS04575 3f139dbe93d422914872dc91025858da 258 SMART SM00345 26 84 7.6E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS18785 9592d3193b6b6864efe2126c7c8ee33d 414 Pfam PF11871 Domain of unknown function (DUF3391) 2 125 4.8E-35 T 29-03-2018 IPR021812 Protein of unknown function DUF3391 Y880_RS18785 9592d3193b6b6864efe2126c7c8ee33d 414 TIGRFAM TIGR00277 HDIG: HDIG domain 155 246 5.5E-9 T 29-03-2018 IPR006675 HDIG domain Y880_RS18785 9592d3193b6b6864efe2126c7c8ee33d 414 SUPERFAMILY SSF109604 151 317 1.24E-33 T 29-03-2018 Y880_RS18785 9592d3193b6b6864efe2126c7c8ee33d 414 Pfam PF01966 HD domain 158 279 2.8E-15 T 29-03-2018 IPR006674 HD domain Y880_RS18785 9592d3193b6b6864efe2126c7c8ee33d 414 SMART SM00471 153 289 8.9E-12 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS18785 9592d3193b6b6864efe2126c7c8ee33d 414 Gene3D G3DSA:1.10.3210.10 38 320 7.4E-49 T 29-03-2018 Y880_RS24840 10598933b49b43108501594a06627c64 160 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 33.724 T 29-03-2018 IPR003791 Protein of unknown function UPF0178 Y880_RS24840 10598933b49b43108501594a06627c64 160 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 146 1.8E-42 T 29-03-2018 IPR003791 Protein of unknown function UPF0178 Y880_RS08260 bceaeb26cfad61b1f898ce3017a174ff 441 Gene3D G3DSA:1.20.1250.20 19 222 2.0E-35 T 29-03-2018 Y880_RS08260 bceaeb26cfad61b1f898ce3017a174ff 441 Pfam PF07690 Major Facilitator Superfamily 35 397 6.8E-49 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS08260 bceaeb26cfad61b1f898ce3017a174ff 441 SUPERFAMILY SSF103473 13 432 4.32E-70 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS08260 bceaeb26cfad61b1f898ce3017a174ff 441 Gene3D G3DSA:1.20.1250.20 244 440 3.6E-17 T 29-03-2018 Y880_RS27510 4b9ff941a12f8c0834959ed2add950d4 161 Pfam PF01584 CheW-like domain 15 151 2.0E-35 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS27510 4b9ff941a12f8c0834959ed2add950d4 161 SUPERFAMILY SSF50341 13 153 1.07E-39 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS27510 4b9ff941a12f8c0834959ed2add950d4 161 Gene3D G3DSA:2.30.30.40 97 142 9.7E-16 T 29-03-2018 Y880_RS27510 4b9ff941a12f8c0834959ed2add950d4 161 SMART SM00260 11 148 1.5E-41 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Y880_RS27510 4b9ff941a12f8c0834959ed2add950d4 161 Gene3D G3DSA:2.40.50.180 32 96 1.2E-19 T 29-03-2018 Y880_RS14635 6e3e2aacfce85d7902c9f9059862c365 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 8 167 6.7E-46 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 Y880_RS14635 6e3e2aacfce85d7902c9f9059862c365 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 289 5.1E-26 T 29-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y880_RS14635 6e3e2aacfce85d7902c9f9059862c365 296 Gene3D G3DSA:3.40.50.720 6 177 1.4E-32 T 29-03-2018 Y880_RS14635 6e3e2aacfce85d7902c9f9059862c365 296 SUPERFAMILY SSF51735 8 168 7.3E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14635 6e3e2aacfce85d7902c9f9059862c365 296 SUPERFAMILY SSF48179 168 292 6.35E-27 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS14635 6e3e2aacfce85d7902c9f9059862c365 296 PIRSF PIRSF000103 4 296 3.8E-68 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y880_RS14635 6e3e2aacfce85d7902c9f9059862c365 296 Gene3D G3DSA:1.10.1040.10 178 295 7.9E-27 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 SUPERFAMILY SSF46785 17 98 8.07E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 57 4.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 47 4.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 68 4.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 Pfam PF03466 LysR substrate binding domain 109 306 1.1E-19 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 Gene3D G3DSA:3.40.190.10 108 185 7.5E-7 T 29-03-2018 Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 Gene3D G3DSA:3.40.190.10 186 276 5.8E-15 T 29-03-2018 Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 Gene3D G3DSA:1.10.10.10 16 101 2.5E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 SUPERFAMILY SSF53850 109 307 3.08E-25 T 29-03-2018 Y880_RS12630 2bb2a84c537ad7135e49d16a22a91c68 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 80 4.9E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS07860 5b8d130be5aaae68322dd0150e56e971 453 Pfam PF00419 Fimbrial protein 268 453 1.8E-27 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS07860 5b8d130be5aaae68322dd0150e56e971 453 PIRSF PIRSF029766 7 453 1.1E-199 T 29-03-2018 IPR011228 Uncharacterised conserved protein UCP029766 Y880_RS07860 5b8d130be5aaae68322dd0150e56e971 453 Gene3D G3DSA:2.60.40.1090 274 453 1.8E-19 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS07860 5b8d130be5aaae68322dd0150e56e971 453 SUPERFAMILY SSF49401 274 451 8.2E-9 T 29-03-2018 IPR008966 Adhesion domain Y880_RS07970 ff71d1aea23edeb645baf88b1c7bc64f 293 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 2 260 32.198 T 29-03-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type Y880_RS07970 ff71d1aea23edeb645baf88b1c7bc64f 293 SMART SM00559 53 181 6.6E-49 T 29-03-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 Y880_RS07970 ff71d1aea23edeb645baf88b1c7bc64f 293 PIRSF PIRSF006493 1 292 4.0E-106 T 29-03-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type Y880_RS07970 ff71d1aea23edeb645baf88b1c7bc64f 293 Pfam PF02735 Ku70/Ku80 beta-barrel domain 12 193 2.1E-34 T 29-03-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 Y880_RS07970 ff71d1aea23edeb645baf88b1c7bc64f 293 Gene3D G3DSA:2.40.290.10 2 183 4.5E-30 T 29-03-2018 IPR016194 SPOC-like, C-terminal domain Y880_RS07970 ff71d1aea23edeb645baf88b1c7bc64f 293 SUPERFAMILY SSF100939 2 259 1.2E-51 T 29-03-2018 IPR016194 SPOC-like, C-terminal domain Y880_RS07970 ff71d1aea23edeb645baf88b1c7bc64f 293 TIGRFAM TIGR02772 Ku_bact: Ku protein 2 262 7.4E-104 T 29-03-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type Y880_RS28685 740a268897a9c64e22688265a59172b3 189 Pfam PF02622 Uncharacterized ACR, COG1678 18 176 3.4E-47 T 29-03-2018 IPR003774 Protein of unknown function UPF0301 Y880_RS28685 740a268897a9c64e22688265a59172b3 189 SUPERFAMILY SSF143456 7 189 6.28E-62 T 29-03-2018 Y880_RS28685 740a268897a9c64e22688265a59172b3 189 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 7 189 37.087 T 29-03-2018 IPR003774 Protein of unknown function UPF0301 Y880_RS28685 740a268897a9c64e22688265a59172b3 189 Gene3D G3DSA:3.40.1740.10 1 98 2.5E-28 T 29-03-2018 Y880_RS28685 740a268897a9c64e22688265a59172b3 189 Gene3D G3DSA:3.40.1740.10 107 181 3.3E-10 T 29-03-2018 Y880_RS11875 0d9ab0d322cda584371c4cd6f0142d8e 122 Pfam PF11190 Protein of unknown function (DUF2976) 35 121 2.8E-33 T 29-03-2018 IPR021356 Integrating conjugative element protein PFL4702 Y880_RS11875 0d9ab0d322cda584371c4cd6f0142d8e 122 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 21 122 7.5E-46 T 29-03-2018 IPR021356 Integrating conjugative element protein PFL4702 Y880_RS04815 d34c1b7ae544d66d6be16d0adfd17204 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS04815 d34c1b7ae544d66d6be16d0adfd17204 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 444 8.5E-113 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS04815 d34c1b7ae544d66d6be16d0adfd17204 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 472 1.3E-233 T 29-03-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y880_RS04815 d34c1b7ae544d66d6be16d0adfd17204 475 Gene3D G3DSA:1.20.210.10 4 475 2.6E-97 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS04815 d34c1b7ae544d66d6be16d0adfd17204 475 SUPERFAMILY SSF81442 9 468 3.27E-125 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS25465 93cb5a606a04dcab0d6b4328e7f5a073 677 Gene3D G3DSA:2.130.10.10 3 326 1.7E-11 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS25465 93cb5a606a04dcab0d6b4328e7f5a073 677 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 394 672 1.2E-10 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS25465 93cb5a606a04dcab0d6b4328e7f5a073 677 SUPERFAMILY SSF50978 22 309 2.93E-9 T 29-03-2018 IPR017986 WD40-repeat-containing domain GO:0005515 Y880_RS25465 93cb5a606a04dcab0d6b4328e7f5a073 677 Gene3D G3DSA:1.10.3720.10 448 673 1.3E-28 T 29-03-2018 Y880_RS25465 93cb5a606a04dcab0d6b4328e7f5a073 677 SUPERFAMILY SSF161098 368 444 4.45E-6 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS25465 93cb5a606a04dcab0d6b4328e7f5a073 677 SUPERFAMILY SSF161098 446 662 1.7E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS25465 93cb5a606a04dcab0d6b4328e7f5a073 677 Gene3D G3DSA:1.10.3720.10 327 447 7.4E-13 T 29-03-2018 Y880_RS01810 e0e937e41e14aec901568ae53f88a943 357 Pfam PF01594 AI-2E family transporter 20 345 3.2E-72 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like Y880_RS25960 d4f2137a88abeab187ea7a24de3c0cd9 287 SUPERFAMILY SSF53335 44 219 4.14E-29 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS25960 d4f2137a88abeab187ea7a24de3c0cd9 287 Gene3D G3DSA:3.40.50.150 28 270 1.2E-23 T 29-03-2018 Y880_RS25960 d4f2137a88abeab187ea7a24de3c0cd9 287 Pfam PF13489 Methyltransferase domain 51 198 2.0E-15 T 29-03-2018 Y880_RS08505 c726372d37a93bcedc09de8f421ef076 256 Gene3D G3DSA:3.30.1950.10 52 124 9.3E-15 T 29-03-2018 Y880_RS08505 c726372d37a93bcedc09de8f421ef076 256 Gene3D G3DSA:3.10.560.10 125 220 6.0E-17 T 29-03-2018 Y880_RS08505 c726372d37a93bcedc09de8f421ef076 256 Pfam PF02563 Polysaccharide biosynthesis/export protein 49 129 5.7E-14 T 29-03-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 Y880_RS02775 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 SUPERFAMILY SSF52172 1 177 7.18E-40 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS02775 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 SMART SM00862 145 220 5.4E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS02775 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Pfam PF00072 Response regulator receiver domain 4 112 2.6E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS02775 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 SMART SM00448 1 112 2.2E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS02775 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Gene3D G3DSA:3.40.50.2300 1 116 5.3E-32 T 29-03-2018 Y880_RS02775 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Gene3D G3DSA:1.10.10.10 117 224 7.4E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02775 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 8.3E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS01660 41c5d0e24ee9ae85e47a7c5ace7aa5af 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 144 7.2E-30 T 29-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 Y880_RS01660 41c5d0e24ee9ae85e47a7c5ace7aa5af 146 TIGRFAM TIGR02801 tolR: protein TolR 11 144 2.4E-46 T 29-03-2018 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 Y880_RS05210 0ff5ff655a34a85b93dac460cc42a619 564 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 3 562 1.8E-229 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y880_RS05210 0ff5ff655a34a85b93dac460cc42a619 564 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 562 35.413 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y880_RS05210 0ff5ff655a34a85b93dac460cc42a619 564 PIRSF PIRSF001294 1 564 2.7E-243 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y880_RS05210 0ff5ff655a34a85b93dac460cc42a619 564 Pfam PF03814 Potassium-transporting ATPase A subunit 11 560 2.0E-244 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y880_RS23715 b1424c75ff8e2f0181a1c363088521c6 357 Pfam PF12833 Helix-turn-helix domain 257 335 1.7E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS23715 b1424c75ff8e2f0181a1c363088521c6 357 Gene3D G3DSA:1.10.10.60 120 288 0.0045 T 29-03-2018 Y880_RS23715 b1424c75ff8e2f0181a1c363088521c6 357 SMART SM00342 251 333 1.8E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS23715 b1424c75ff8e2f0181a1c363088521c6 357 SUPERFAMILY SSF46689 287 336 4.48E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS23715 b1424c75ff8e2f0181a1c363088521c6 357 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 206 6.4E-37 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS23715 b1424c75ff8e2f0181a1c363088521c6 357 Gene3D G3DSA:1.10.10.60 289 349 8.9E-14 T 29-03-2018 Y880_RS09855 0b88189c3a6246cd465f8d39f90c70b2 417 Gene3D G3DSA:3.40.1580.10 14 186 9.3E-7 T 29-03-2018 Y880_RS09855 0b88189c3a6246cd465f8d39f90c70b2 417 SUPERFAMILY SSF140860 248 313 6.8E-8 T 29-03-2018 Y880_RS09855 0b88189c3a6246cd465f8d39f90c70b2 417 Gene3D G3DSA:1.25.40.20 246 379 2.1E-7 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 SUPERFAMILY SSF51161 252 439 2.45E-49 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 Gene3D G3DSA:2.160.10.10 309 440 2.9E-32 T 29-03-2018 Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 6.5E-203 T 29-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 43.326 T 29-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 SUPERFAMILY SSF53448 1 249 1.07E-63 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 Pfam PF12804 MobA-like NTP transferase domain 6 121 2.6E-24 T 29-03-2018 IPR025877 MobA-like NTP transferase Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 Gene3D G3DSA:3.90.550.10 2 241 9.5E-52 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 264 296 1.2E-7 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 1.5E-5 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS26485 02e64a58f8cb2dd81ca2496fe8917a84 454 Gene3D G3DSA:2.160.10.10 242 308 1.4E-15 T 29-03-2018 Y880_RS28905 bbb23a1c919cdd27d5ec49ba225a7775 407 Pfam PF02515 CoA-transferase family III 5 383 4.2E-133 T 29-03-2018 IPR003673 CoA-transferase family III GO:0003824 Y880_RS28905 bbb23a1c919cdd27d5ec49ba225a7775 407 Gene3D G3DSA:3.40.50.10540 1 407 4.2E-161 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS28905 bbb23a1c919cdd27d5ec49ba225a7775 407 SUPERFAMILY SSF89796 3 407 6.28E-147 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS04600 07fe6dbe743805e999cffbafc89212da 377 Pfam PF00487 Fatty acid desaturase 115 329 1.2E-26 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 SUPERFAMILY SSF52402 390 490 1.14E-17 T 29-03-2018 Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 SUPERFAMILY SSF52402 211 340 1.14E-17 T 29-03-2018 Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 SUPERFAMILY SSF56235 1 193 9.44E-28 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 Gene3D G3DSA:3.40.50.620 203 532 3.0E-19 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 Gene3D G3DSA:3.60.20.10 46 202 3.5E-17 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 PIRSF PIRSF001589 94 531 5.5E-42 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 PIRSF PIRSF001589 1 76 1.9E-6 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 Pfam PF00733 Asparagine synthase 214 525 3.4E-45 T 29-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 Pfam PF13537 Glutamine amidotransferase domain 97 145 2.0E-13 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain Y880_RS02955 5566c1b6fa704fe3ee89040a0057bd76 532 Gene3D G3DSA:3.60.20.10 1 45 0.011 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS25470 3ee3011b07dd6d5bbd84285472ca9890 323 Gene3D G3DSA:3.40.190.10 173 322 4.3E-26 T 29-03-2018 Y880_RS25470 3ee3011b07dd6d5bbd84285472ca9890 323 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 3 309 7.5E-97 T 29-03-2018 IPR011862 Phosphate binding protein GO:0006810 Y880_RS25470 3ee3011b07dd6d5bbd84285472ca9890 323 Gene3D G3DSA:3.40.190.10 50 172 3.1E-32 T 29-03-2018 Y880_RS25470 3ee3011b07dd6d5bbd84285472ca9890 323 Pfam PF12849 PBP superfamily domain 36 295 1.3E-33 T 29-03-2018 IPR024370 PBP domain Y880_RS25470 3ee3011b07dd6d5bbd84285472ca9890 323 Gene3D G3DSA:3.40.190.10 17 49 0.26 T 29-03-2018 Y880_RS25470 3ee3011b07dd6d5bbd84285472ca9890 323 SUPERFAMILY SSF53850 37 320 9.86E-72 T 29-03-2018 Y880_RS15120 7743ca3a3257e3530404f304262a3de2 161 PIRSF PIRSF029598 2 145 8.7E-40 T 29-03-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 Y880_RS15120 7743ca3a3257e3530404f304262a3de2 161 Pfam PF06146 Phosphate-starvation-inducible E 59 127 2.2E-17 T 29-03-2018 IPR020948 Phosphate-starvation-induced PsiE-like Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 Gene3D G3DSA:3.40.50.720 51 255 1.5E-58 T 29-03-2018 Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 9.4E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 9.4E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 9.4E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 9.4E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 9.4E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 9.4E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.0E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.0E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.0E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 Gene3D G3DSA:3.40.50.10090 4 50 3.5E-11 T 29-03-2018 Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 253 1.4E-65 T 29-03-2018 Y880_RS06270 da63f311b437b57863b3e84822cee4ab 255 SUPERFAMILY SSF51735 10 253 6.22E-83 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 4.1E-15 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.1E-15 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 4.1E-15 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 359 374 4.1E-15 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 4.1E-15 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.6E-22 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 6.6E-22 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 6.6E-22 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 6.6E-22 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 6.6E-22 T 29-03-2018 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 281 1.7E-50 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Gene3D G3DSA:3.50.50.60 245 311 5.3E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Gene3D G3DSA:3.50.50.60 1 123 1.1E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Gene3D G3DSA:3.50.50.60 124 244 2.5E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 SUPERFAMILY SSF51905 194 323 5.4E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25370 0e7ed2bb6ffaf6a0b50497e751bb2874 384 SUPERFAMILY SSF51905 1 164 5.4E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS05175 2c53d1e3602d98d00e2d722a5bb803e9 424 Gene3D G3DSA:1.20.1250.20 36 225 1.7E-18 T 29-03-2018 Y880_RS05175 2c53d1e3602d98d00e2d722a5bb803e9 424 Gene3D G3DSA:1.20.1250.20 226 415 9.7E-17 T 29-03-2018 Y880_RS05175 2c53d1e3602d98d00e2d722a5bb803e9 424 Pfam PF07690 Major Facilitator Superfamily 58 373 4.8E-20 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS05175 2c53d1e3602d98d00e2d722a5bb803e9 424 TIGRFAM TIGR00896 CynX: cyanate transporter 42 391 2.8E-135 T 29-03-2018 IPR004747 Cyanate transport system protein GO:0016021 Y880_RS05175 2c53d1e3602d98d00e2d722a5bb803e9 424 SUPERFAMILY SSF103473 19 412 2.75E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS17790 4192bdf9077fe620f1b01b62f8b347da 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y880_RS17790 4192bdf9077fe620f1b01b62f8b347da 331 Gene3D G3DSA:3.20.20.150 8 322 1.0E-14 T 29-03-2018 Y880_RS17790 4192bdf9077fe620f1b01b62f8b347da 331 Pfam PF01136 Peptidase family U32 75 330 2.9E-63 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y880_RS06740 7c1bb07365e769a0a4cd590f7465b678 410 Pfam PF03222 Tryptophan/tyrosine permease family 23 371 5.3E-35 T 29-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 Y880_RS06740 7c1bb07365e769a0a4cd590f7465b678 410 PRINTS PR00166 Aromatic amino acid permease signature 341 360 1.4E-13 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS06740 7c1bb07365e769a0a4cd590f7465b678 410 PRINTS PR00166 Aromatic amino acid permease signature 284 303 1.4E-13 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS06740 7c1bb07365e769a0a4cd590f7465b678 410 PRINTS PR00166 Aromatic amino acid permease signature 97 117 1.4E-13 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS06740 7c1bb07365e769a0a4cd590f7465b678 410 PRINTS PR00166 Aromatic amino acid permease signature 320 338 1.4E-13 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS06740 7c1bb07365e769a0a4cd590f7465b678 410 PRINTS PR00166 Aromatic amino acid permease signature 25 48 1.4E-13 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS06740 7c1bb07365e769a0a4cd590f7465b678 410 PRINTS PR00166 Aromatic amino acid permease signature 52 71 1.4E-13 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS17880 b286f54d9611c128e9b36384236c1e65 335 PIRSF PIRSF000267 2 335 3.2E-96 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Y880_RS17880 b286f54d9611c128e9b36384236c1e65 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 1.6E-48 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Y880_RS17880 b286f54d9611c128e9b36384236c1e65 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 1.0E-103 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Y880_RS19295 ed2297a81febc511edafe33c923298ed 388 Gene3D G3DSA:2.130.10.10 164 386 2.9E-31 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS19295 ed2297a81febc511edafe33c923298ed 388 Gene3D G3DSA:2.130.10.10 17 163 8.0E-16 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS19295 ed2297a81febc511edafe33c923298ed 388 Pfam PF10282 Lactonase, 7-bladed beta-propeller 30 384 9.7E-114 T 29-03-2018 IPR019405 Lactonase, 7-bladed beta propeller Y880_RS19295 ed2297a81febc511edafe33c923298ed 388 SUPERFAMILY SSF50974 7 353 1.57E-50 T 29-03-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 Y880_RS17270 a8afbd032277a9587e7dfab3f481d1bd 128 SUPERFAMILY SSF82649 1 125 3.66E-49 T 29-03-2018 Y880_RS17270 a8afbd032277a9587e7dfab3f481d1bd 128 Pfam PF01592 NifU-like N terminal domain 2 125 3.5E-58 T 29-03-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Y880_RS17270 a8afbd032277a9587e7dfab3f481d1bd 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.5E-69 T 29-03-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Y880_RS17270 a8afbd032277a9587e7dfab3f481d1bd 128 Gene3D G3DSA:3.90.1010.10 1 127 3.2E-52 T 29-03-2018 Y880_RS02885 c95fa282d08f3c8eeb52c24da4b180c2 220 Pfam PF01596 O-methyltransferase 22 219 6.4E-63 T 29-03-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 Y880_RS02885 c95fa282d08f3c8eeb52c24da4b180c2 220 Gene3D G3DSA:3.40.50.150 2 220 3.3E-40 T 29-03-2018 Y880_RS02885 c95fa282d08f3c8eeb52c24da4b180c2 220 SUPERFAMILY SSF53335 8 220 3.22E-48 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS23455 69938d237a53a9b816b834124145ad12 215 SUPERFAMILY SSF46689 8 85 1.35E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS23455 69938d237a53a9b816b834124145ad12 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 7.5E-13 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS23455 69938d237a53a9b816b834124145ad12 215 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 89 200 1.3E-25 T 29-03-2018 Y880_RS23455 69938d237a53a9b816b834124145ad12 215 SUPERFAMILY SSF48498 86 200 9.79E-19 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS23455 69938d237a53a9b816b834124145ad12 215 Gene3D G3DSA:1.10.357.10 1 215 3.3E-42 T 29-03-2018 Y880_RS13205 57d55c4f68999f71a316c35a5f754973 460 Pfam PF00909 Ammonium Transporter Family 77 453 1.5E-85 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Y880_RS13205 57d55c4f68999f71a316c35a5f754973 460 SUPERFAMILY SSF111352 71 438 3.14E-91 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Y880_RS13205 57d55c4f68999f71a316c35a5f754973 460 ProSitePatterns PS01219 Ammonium transporters signature. 221 246 - T 29-03-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Y880_RS13205 57d55c4f68999f71a316c35a5f754973 460 Gene3D G3DSA:1.10.3430.10 66 438 4.5E-86 T 29-03-2018 Y880_RS25195 1fccd6e3293b7cee4f3434398a7ff5c1 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 22.188 T 29-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS25195 1fccd6e3293b7cee4f3434398a7ff5c1 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.5E-29 T 29-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS25195 1fccd6e3293b7cee4f3434398a7ff5c1 78 Gene3D G3DSA:2.30.170.40 2 75 2.5E-30 T 29-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS25195 1fccd6e3293b7cee4f3434398a7ff5c1 78 SUPERFAMILY SSF143800 2 77 1.67E-31 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS25195 1fccd6e3293b7cee4f3434398a7ff5c1 78 Pfam PF00830 Ribosomal L28 family 3 61 1.2E-28 T 29-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS29175 5ffc9c094465337442a759bcc79e20ff 332 Gene3D G3DSA:2.60.40.1090 192 332 8.4E-12 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS29175 5ffc9c094465337442a759bcc79e20ff 332 SUPERFAMILY SSF49401 206 331 3.18E-13 T 29-03-2018 IPR008966 Adhesion domain Y880_RS29175 5ffc9c094465337442a759bcc79e20ff 332 Pfam PF00419 Fimbrial protein 196 332 9.0E-16 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS06885 564d6b0a4e8b02498250118ef5ee7cc9 319 SUPERFAMILY SSF53822 24 318 2.2E-77 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS06885 564d6b0a4e8b02498250118ef5ee7cc9 319 Gene3D G3DSA:3.40.50.2300 155 318 1.0E-40 T 29-03-2018 Y880_RS06885 564d6b0a4e8b02498250118ef5ee7cc9 319 Gene3D G3DSA:3.40.50.2300 33 154 1.0E-21 T 29-03-2018 Y880_RS06885 564d6b0a4e8b02498250118ef5ee7cc9 319 Pfam PF13407 Periplasmic binding protein domain 37 299 2.7E-56 T 29-03-2018 IPR025997 Periplasmic binding protein Y880_RS23385 20a57aafdf6f8b60142e022471246ae8 205 Gene3D G3DSA:3.90.79.10 2 205 6.8E-49 T 29-03-2018 Y880_RS23385 20a57aafdf6f8b60142e022471246ae8 205 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 11 195 7.6E-53 T 29-03-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 Y880_RS23385 20a57aafdf6f8b60142e022471246ae8 205 SUPERFAMILY SSF55811 9 204 7.72E-50 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS23385 20a57aafdf6f8b60142e022471246ae8 205 ProSitePatterns PS00893 Nudix box signature. 93 114 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS23385 20a57aafdf6f8b60142e022471246ae8 205 Pfam PF00293 NUDIX domain 52 174 8.0E-15 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS19795 097dbf825322865410e75a15f2a0ac19 416 Pfam PF13629 Pilus formation protein N terminal region 39 108 1.8E-19 T 29-03-2018 IPR032789 Pilus formation protein, N-terminal Y880_RS19795 097dbf825322865410e75a15f2a0ac19 416 PRINTS PR00811 Bacterial general secretion pathway protein D signature 335 353 8.9E-11 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS19795 097dbf825322865410e75a15f2a0ac19 416 PRINTS PR00811 Bacterial general secretion pathway protein D signature 358 372 8.9E-11 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS19795 097dbf825322865410e75a15f2a0ac19 416 PRINTS PR00811 Bacterial general secretion pathway protein D signature 205 229 8.9E-11 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS19795 097dbf825322865410e75a15f2a0ac19 416 Pfam PF00263 Bacterial type II and III secretion system protein 209 371 1.9E-43 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 Y880_RS19080 61a9b2b2754dc425f5be88d76dfc3a90 359 Gene3D G3DSA:3.90.1150.10 257 355 4.8E-12 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS19080 61a9b2b2754dc425f5be88d76dfc3a90 359 Gene3D G3DSA:3.40.640.10 9 256 1.9E-45 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS19080 61a9b2b2754dc425f5be88d76dfc3a90 359 SUPERFAMILY SSF53383 2 354 3.09E-82 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS19080 61a9b2b2754dc425f5be88d76dfc3a90 359 Pfam PF00155 Aminotransferase class I and II 29 236 2.0E-18 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS05980 05564e8f930a92ff73b6c9fd340c8918 245 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Y880_RS05980 05564e8f930a92ff73b6c9fd340c8918 245 Gene3D G3DSA:3.40.1010.10 2 126 8.5E-35 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS05980 05564e8f930a92ff73b6c9fd340c8918 245 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 234 4.0E-94 T 29-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Y880_RS05980 05564e8f930a92ff73b6c9fd340c8918 245 Gene3D G3DSA:3.30.950.10 127 237 4.6E-31 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS05980 05564e8f930a92ff73b6c9fd340c8918 245 SUPERFAMILY SSF53790 1 235 4.58E-71 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS05980 05564e8f930a92ff73b6c9fd340c8918 245 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 212 4.7E-47 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS18320 d62c52b732e804be69728c5a214be916 151 SUPERFAMILY SSF54637 9 146 5.08E-37 T 29-03-2018 IPR029069 HotDog domain Y880_RS18320 d62c52b732e804be69728c5a214be916 151 Gene3D G3DSA:3.10.129.10 2 151 2.5E-32 T 29-03-2018 Y880_RS18320 d62c52b732e804be69728c5a214be916 151 Pfam PF01575 MaoC like domain 13 116 8.2E-26 T 29-03-2018 IPR002539 MaoC-like domain Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 Gene3D G3DSA:3.40.50.720 12 188 5.2E-30 T 29-03-2018 Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 Pfam PF01370 NAD dependent epimerase/dehydratase family 18 263 9.2E-53 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 SUPERFAMILY SSF51735 4 336 1.79E-82 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 PRINTS PR01713 Nucleotide sugar epimerase signature 257 272 5.8E-8 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 PRINTS PR01713 Nucleotide sugar epimerase signature 44 60 5.8E-8 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 PRINTS PR01713 Nucleotide sugar epimerase signature 233 248 5.8E-8 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 PRINTS PR01713 Nucleotide sugar epimerase signature 301 318 5.8E-8 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 Y880_RS13795 a7747e6542fcfe04435449153fd9691b 340 Gene3D G3DSA:3.90.25.10 189 338 8.9E-34 T 29-03-2018 Y880_RS12535 842a7c42cf13a7bcabe47e507f284941 257 Pfam PF00005 ABC transporter 20 169 2.6E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS12535 842a7c42cf13a7bcabe47e507f284941 257 SMART SM00382 29 213 1.4E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS12535 842a7c42cf13a7bcabe47e507f284941 257 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS12535 842a7c42cf13a7bcabe47e507f284941 257 SUPERFAMILY SSF52540 11 228 3.48E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12535 842a7c42cf13a7bcabe47e507f284941 257 Gene3D G3DSA:3.40.50.300 2 230 5.0E-62 T 29-03-2018 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 SUPERFAMILY SSF46955 1 111 1.61E-24 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 Pfam PF13411 MerR HTH family regulatory protein 1 68 2.6E-15 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 6.7E-5 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 6.7E-5 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 6.7E-5 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 Gene3D G3DSA:1.10.1660.10 55 139 7.0E-13 T 29-03-2018 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 Gene3D G3DSA:1.10.1660.10 1 54 5.7E-18 T 29-03-2018 Y880_RS11030 3e08d6957e85e32c720335834e8defd5 162 SMART SM00422 1 69 3.0E-20 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS01515 7ea2e835001b53ad3c722ecda69067cf 238 Pfam PF11306 Protein of unknown function (DUF3108) 19 220 2.8E-19 T 29-03-2018 IPR021457 Protein of unknown function DUF3108 Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 Gene3D G3DSA:3.40.50.720 3 261 9.4E-42 T 29-03-2018 Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 PIRSF PIRSF000094 1 263 5.5E-110 T 29-03-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 255 1.6E-83 T 29-03-2018 Y880_RS06160 d54b0fa62c0c002dbbbeb8183858add6 265 SUPERFAMILY SSF51735 6 255 1.36E-61 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 502 2.0E-164 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PIRSF PIRSF002869 1 512 1.6E-175 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 Pfam PF03023 MviN-like protein 28 476 9.9E-155 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PRINTS PR01806 Virulence factor MviN signature 357 376 1.0E-86 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PRINTS PR01806 Virulence factor MviN signature 409 426 1.0E-86 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PRINTS PR01806 Virulence factor MviN signature 157 178 1.0E-86 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PRINTS PR01806 Virulence factor MviN signature 52 68 1.0E-86 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PRINTS PR01806 Virulence factor MviN signature 133 157 1.0E-86 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PRINTS PR01806 Virulence factor MviN signature 259 285 1.0E-86 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 PRINTS PR01806 Virulence factor MviN signature 33 52 1.0E-86 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS21145 92863eb17fe7ad27a59701830b7c3b47 512 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 20.51 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y880_RS07930 9dd31f8ca30d93c49f980170c18de9f9 95 Pfam PF10711 Hypothetical protein (DUF2513) 2 84 2.5E-17 T 29-03-2018 IPR019650 Protein of unknown function DUF2513 Y880_RS07930 9dd31f8ca30d93c49f980170c18de9f9 95 Gene3D G3DSA:1.10.10.10 7 94 7.9E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS15955 fbacec979a446cd522f9285d4191a52a 97 Gene3D G3DSA:3.30.70.100 1 95 1.6E-24 T 29-03-2018 Y880_RS15955 fbacec979a446cd522f9285d4191a52a 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 79 1.2E-23 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS15955 fbacec979a446cd522f9285d4191a52a 97 SUPERFAMILY SSF54909 1 95 3.83E-30 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS08275 f6caf20a858b9174d7aa2d47573320c7 416 Pfam PF03573 outer membrane porin, OprD family 29 414 2.0E-156 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS08275 f6caf20a858b9174d7aa2d47573320c7 416 Gene3D G3DSA:2.40.160.10 1 416 1.8E-121 T 29-03-2018 Y880_RS27455 92d8d0a202240a94fc3e40819253f531 468 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 23 441 1.2E-112 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS27455 92d8d0a202240a94fc3e40819253f531 468 TIGRFAM TIGR03173 pbuX: xanthine permease 28 443 2.1E-128 T 29-03-2018 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 Y880_RS27455 92d8d0a202240a94fc3e40819253f531 468 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 359 379 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS27455 92d8d0a202240a94fc3e40819253f531 468 Pfam PF00860 Permease family 25 410 2.2E-85 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS03375 1e829dbad7bd189cdd28e6a4e3c5e290 310 Gene3D G3DSA:3.40.50.720 104 278 6.1E-42 T 29-03-2018 Y880_RS03375 1e829dbad7bd189cdd28e6a4e3c5e290 310 Gene3D G3DSA:3.40.50.720 1 103 6.4E-5 T 29-03-2018 Y880_RS03375 1e829dbad7bd189cdd28e6a4e3c5e290 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 103 275 2.3E-42 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y880_RS03375 1e829dbad7bd189cdd28e6a4e3c5e290 310 SUPERFAMILY SSF51735 97 275 9.05E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS20955 5e5e9be0c27b28944806224c99b5dc90 290 Pfam PF01478 Type IV leader peptidase family 137 245 1.8E-24 T 29-03-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Y880_RS20955 5e5e9be0c27b28944806224c99b5dc90 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 225 240 1.5E-26 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y880_RS20955 5e5e9be0c27b28944806224c99b5dc90 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 202 212 1.5E-26 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y880_RS20955 5e5e9be0c27b28944806224c99b5dc90 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 145 162 1.5E-26 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y880_RS20955 5e5e9be0c27b28944806224c99b5dc90 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 213 224 1.5E-26 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y880_RS20955 5e5e9be0c27b28944806224c99b5dc90 290 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 20 126 1.9E-33 T 29-03-2018 IPR010627 Peptidase A24A, N-terminal Y880_RS06950 924b79827cfe3c80bd1da7fcf44e4235 277 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 257 1.2E-79 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Y880_RS06950 924b79827cfe3c80bd1da7fcf44e4235 277 Pfam PF02673 Bacitracin resistance protein BacA 9 259 8.4E-85 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Y880_RS06950 924b79827cfe3c80bd1da7fcf44e4235 277 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 264 17.686 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Y880_RS09125 f9ac66e40d01e6fced391587831a9192 381 SUPERFAMILY SSF51679 1 349 4.58E-103 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS09125 f9ac66e40d01e6fced391587831a9192 381 Pfam PF00296 Luciferase-like monooxygenase 1 324 6.8E-94 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS09125 f9ac66e40d01e6fced391587831a9192 381 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 2 379 72.07 T 29-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y880_RS09125 f9ac66e40d01e6fced391587831a9192 381 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 347 1.1E-193 T 29-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y880_RS09125 f9ac66e40d01e6fced391587831a9192 381 Gene3D G3DSA:3.20.20.30 1 353 2.5E-95 T 29-03-2018 Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 Pfam PF09369 Domain of unknown function (DUF1998) 1578 1657 6.5E-7 T 29-03-2018 IPR018973 DEAD/DEAH-box helicase, putative Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 Gene3D G3DSA:3.40.50.300 34 333 2.8E-26 T 29-03-2018 Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 Pfam PF00271 Helicase conserved C-terminal domain 1028 1098 1.3E-9 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 SMART SM00487 103 330 1.9E-21 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 SMART SM00490 1020 1099 2.2E-11 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 Gene3D G3DSA:3.40.50.300 628 1122 2.8E-21 T 29-03-2018 Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 SUPERFAMILY SSF52540 94 308 9.02E-29 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 SUPERFAMILY SSF52540 124 185 2.57E-27 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 SUPERFAMILY SSF52540 1019 1159 2.57E-27 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00775 9026f489eb21b40518edb8b453b6cd44 2066 Pfam PF00270 DEAD/DEAH box helicase 111 308 9.2E-19 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS05165 a7d5be39d68bf199a53676badec39e21 268 Pfam PF16234 Domain of unknown function (DUF4892) 20 201 7.5E-98 T 29-03-2018 IPR032608 Protein of unknown function DUF4892 Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 ProSitePatterns PS00483 Dihydroorotase signature 2. 307 318 - T 29-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 SUPERFAMILY SSF51556 55 371 1.02E-90 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 Gene3D G3DSA:2.30.40.10 1 70 1.7E-16 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 Pfam PF01979 Amidohydrolase family 231 425 1.3E-5 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 Pfam PF01979 Amidohydrolase family 51 125 6.0E-6 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 Gene3D G3DSA:3.20.20.140 71 389 6.6E-93 T 29-03-2018 Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 SUPERFAMILY SSF51338 1 54 6.81E-25 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS26395 e381e29efba5a8be5809a7988c3aa948 445 SUPERFAMILY SSF51338 371 433 6.81E-25 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28925 0bb55f28c763cffa69f332dcc47f15bf 540 Pfam PF01384 Phosphate transporter family 84 529 1.3E-86 T 29-03-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Y880_RS18875 3778e7a135f88135cb5e4d6aa5bb7e10 130 SUPERFAMILY SSF55331 2 125 2.24E-43 T 29-03-2018 IPR014347 Tautomerase/MIF superfamily Y880_RS18875 3778e7a135f88135cb5e4d6aa5bb7e10 130 Gene3D G3DSA:3.30.429.10 1 126 2.8E-43 T 29-03-2018 Y880_RS18875 3778e7a135f88135cb5e4d6aa5bb7e10 130 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 122 2.3E-25 T 29-03-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 Y880_RS24990 d0cc80400599e90b2cc02f6a2e2b9ff6 46 Pfam PF13627 Prokaryotic lipoprotein-attachment site 9 30 4.9E-8 T 29-03-2018 IPR032831 Prokaryotic lipoprotein-attachment site Y880_RS24990 d0cc80400599e90b2cc02f6a2e2b9ff6 46 PIRSF PIRSF037657 1 46 5.9E-26 T 29-03-2018 IPR017254 Lipoprotein, LppL Y880_RS24990 d0cc80400599e90b2cc02f6a2e2b9ff6 46 Gene3D G3DSA:3.40.190.10 1 39 1.2E-4 T 29-03-2018 Y880_RS04510 6d1ebce0ddf712a99bcdc4b07c437724 455 Pfam PF00860 Permease family 22 400 1.0E-99 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS04510 6d1ebce0ddf712a99bcdc4b07c437724 455 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 349 369 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS04510 6d1ebce0ddf712a99bcdc4b07c437724 455 TIGRFAM TIGR03173 pbuX: xanthine permease 26 434 1.1E-160 T 29-03-2018 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 Y880_RS04510 6d1ebce0ddf712a99bcdc4b07c437724 455 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 17 432 2.1E-113 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y880_RS12640 99985ea7fb41ef1eb98ef78f1011acaa 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 341 1.6E-93 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS12640 99985ea7fb41ef1eb98ef78f1011acaa 369 Gene3D G3DSA:3.20.20.70 4 369 5.4E-132 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS12640 99985ea7fb41ef1eb98ef78f1011acaa 369 SUPERFAMILY SSF51395 3 365 1.31E-129 T 29-03-2018 Y880_RS19920 2cc8a6729a6a2b47467d29550f9e1c56 268 Pfam PF13174 Tetratricopeptide repeat 94 128 0.001 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS19920 2cc8a6729a6a2b47467d29550f9e1c56 268 Gene3D G3DSA:1.25.40.10 59 267 4.9E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS19920 2cc8a6729a6a2b47467d29550f9e1c56 268 SUPERFAMILY SSF81901 91 144 1.31E-5 T 29-03-2018 Y880_RS19920 2cc8a6729a6a2b47467d29550f9e1c56 268 SUPERFAMILY SSF81901 186 241 1.31E-5 T 29-03-2018 Y880_RS15550 752e6f3c7ce94efda23dd62c048c5401 408 Gene3D G3DSA:1.10.530.10 217 382 9.0E-6 T 29-03-2018 Y880_RS14900 d945b1ad4390731b67cfac158af4a177 196 SUPERFAMILY SSF52172 5 190 8.18E-45 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS14900 d945b1ad4390731b67cfac158af4a177 196 SMART SM01012 135 190 3.6E-15 T 29-03-2018 IPR005561 ANTAR domain GO:0003723 Y880_RS14900 d945b1ad4390731b67cfac158af4a177 196 Pfam PF03861 ANTAR domain 137 190 3.4E-14 T 29-03-2018 IPR005561 ANTAR domain GO:0003723 Y880_RS14900 d945b1ad4390731b67cfac158af4a177 196 Gene3D G3DSA:1.10.10.10 154 191 4.7E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14900 d945b1ad4390731b67cfac158af4a177 196 PIRSF PIRSF036382 2 196 2.0E-51 T 29-03-2018 IPR008327 Signal transduction response regulator, antiterminator Y880_RS14900 d945b1ad4390731b67cfac158af4a177 196 Gene3D G3DSA:3.40.50.2300 10 153 7.6E-6 T 29-03-2018 Y880_RS10205 7dfdae304a02a4e79e71d823fdaa8cfc 395 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 137 1.2E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10205 7dfdae304a02a4e79e71d823fdaa8cfc 395 Gene3D G3DSA:3.50.50.60 124 261 3.9E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10205 7dfdae304a02a4e79e71d823fdaa8cfc 395 SUPERFAMILY SSF51905 2 149 2.19E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS10205 7dfdae304a02a4e79e71d823fdaa8cfc 395 Gene3D G3DSA:3.40.50.720 1 123 8.0E-8 T 29-03-2018 Y880_RS10205 7dfdae304a02a4e79e71d823fdaa8cfc 395 SUPERFAMILY SSF51905 119 261 1.01E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS14395 e782bfdab555bc0f609aac7eac31b4bc 195 SUPERFAMILY SSF55729 11 178 1.51E-30 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS14395 e782bfdab555bc0f609aac7eac31b4bc 195 Gene3D G3DSA:3.40.630.30 1 195 6.0E-36 T 29-03-2018 Y880_RS14395 e782bfdab555bc0f609aac7eac31b4bc 195 Pfam PF13302 Acetyltransferase (GNAT) domain 20 152 4.5E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS16100 2c8cbafb1a96c1413b1c3e6ced324533 265 Gene3D G3DSA:3.90.226.10 10 225 1.8E-67 T 29-03-2018 Y880_RS16100 2c8cbafb1a96c1413b1c3e6ced324533 265 SUPERFAMILY SSF52096 10 263 4.69E-84 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS16100 2c8cbafb1a96c1413b1c3e6ced324533 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 262 2.1E-68 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS16100 2c8cbafb1a96c1413b1c3e6ced324533 265 Gene3D G3DSA:1.10.12.10 226 262 4.2E-19 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS16100 2c8cbafb1a96c1413b1c3e6ced324533 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 SUPERFAMILY SSF54611 8 148 7.19E-53 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 Hamap MF_00821 Protein-export protein SecB [secB]. 1 152 33.454 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 11 147 1.6E-54 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 Pfam PF02556 Preprotein translocase subunit SecB 11 150 2.7E-54 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 80 100 5.6E-37 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 19 36 5.6E-37 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 130 148 5.6E-37 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 104 126 5.6E-37 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS24210 3267b9739b18c5a9b84a12c3c68e887c 163 Gene3D G3DSA:3.10.420.10 8 158 2.9E-50 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 3 475 36.912 T 29-03-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 SUPERFAMILY SSF48452 284 447 5.79E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 Gene3D G3DSA:3.30.2010.10 49 145 5.2E-17 T 29-03-2018 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 Gene3D G3DSA:1.25.40.10 357 475 8.8E-10 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 Gene3D G3DSA:1.25.40.10 215 356 2.6E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 Pfam PF01435 Peptidase family M48 67 250 5.0E-32 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 Pfam PF14559 Tetratricopeptide repeat 281 336 3.9E-6 T 29-03-2018 Y880_RS01800 c10417aa82497bfc81a4af77952e04e4 477 Pfam PF14559 Tetratricopeptide repeat 346 407 1.8E-6 T 29-03-2018 Y880_RS23250 c329d75c4870110955026ff67a5d4bff 323 Pfam PF01715 IPP transferase 41 297 2.8E-87 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Y880_RS23250 c329d75c4870110955026ff67a5d4bff 323 Gene3D G3DSA:1.10.287.890 213 295 2.0E-26 T 29-03-2018 Y880_RS23250 c329d75c4870110955026ff67a5d4bff 323 SUPERFAMILY SSF52540 8 152 1.84E-18 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23250 c329d75c4870110955026ff67a5d4bff 323 Gene3D G3DSA:3.40.50.300 4 194 3.9E-61 T 29-03-2018 Y880_RS23250 c329d75c4870110955026ff67a5d4bff 323 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 314 30.022 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Y880_RS23250 c329d75c4870110955026ff67a5d4bff 323 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 303 3.1E-102 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 Gene3D G3DSA:3.40.50.80 186 316 7.1E-21 T 29-03-2018 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 Gene3D G3DSA:2.40.30.10 91 185 1.6E-10 T 29-03-2018 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 SUPERFAMILY SSF54292 3 79 5.12E-16 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 68 2.8E-7 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 SUPERFAMILY SSF52343 192 317 5.11E-30 T 29-03-2018 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 SUPERFAMILY SSF63380 92 186 8.9E-14 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 215 6.4E-11 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 122 134 6.4E-11 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 221 230 6.4E-11 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 284 292 6.4E-11 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 138 145 6.4E-11 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 Gene3D G3DSA:3.10.20.30 1 79 2.9E-10 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS24785 d0775a27f9567cd79d1d968540a0ccb2 322 Pfam PF00175 Oxidoreductase NAD-binding domain 197 297 4.6E-12 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 1.4E-29 T 29-03-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 Gene3D G3DSA:1.20.20.10 2 78 9.4E-13 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.5E-6 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.5E-6 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.5E-6 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 SUPERFAMILY SSF81333 3 78 1.15E-18 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 29-03-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 Pfam PF00137 ATP synthase subunit C 10 72 3.7E-9 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Y880_RS26520 7bf68f8f528bc902ec655bdd00814742 85 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 14.112 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y880_RS13025 0f988fae7437c1f44cea5daf6855d483 332 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 4 330 49.824 T 29-03-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Y880_RS13025 0f988fae7437c1f44cea5daf6855d483 332 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 230 247 - T 29-03-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 Y880_RS13025 0f988fae7437c1f44cea5daf6855d483 332 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 10 294 1.1E-77 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS13025 0f988fae7437c1f44cea5daf6855d483 332 SUPERFAMILY SSF51445 3 287 2.95E-82 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS13025 0f988fae7437c1f44cea5daf6855d483 332 Gene3D G3DSA:3.20.20.300 2 308 6.4E-79 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y880_RS12500 b989fc29ef5d64ff40f3870129cdc250 129 Pfam PF02570 Precorrin-8X methylmutase 2 126 9.3E-48 T 29-03-2018 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 Y880_RS12500 b989fc29ef5d64ff40f3870129cdc250 129 Gene3D G3DSA:3.40.50.10230 1 129 1.5E-50 T 29-03-2018 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 Y880_RS12500 b989fc29ef5d64ff40f3870129cdc250 129 SUPERFAMILY SSF63965 2 126 5.89E-48 T 29-03-2018 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 Y880_RS16830 f77f4438d08ed899582ea9df5b5ff817 401 Pfam PF12740 Chlorophyllase enzyme 153 283 1.3E-8 T 29-03-2018 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164 Y880_RS16830 f77f4438d08ed899582ea9df5b5ff817 401 Gene3D G3DSA:3.40.50.1820 120 382 7.2E-18 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS16830 f77f4438d08ed899582ea9df5b5ff817 401 SUPERFAMILY SSF53474 154 368 1.61E-19 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29190 7131671e3c048df4e336aecc70601a62 401 Pfam PF00155 Aminotransferase class I and II 39 378 2.3E-52 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS29190 7131671e3c048df4e336aecc70601a62 401 SUPERFAMILY SSF53383 6 385 5.26E-109 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS29190 7131671e3c048df4e336aecc70601a62 401 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 17 378 1.2E-149 T 29-03-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Y880_RS29190 7131671e3c048df4e336aecc70601a62 401 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 29-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 Y880_RS29190 7131671e3c048df4e336aecc70601a62 401 Gene3D G3DSA:3.40.640.10 84 279 1.1E-48 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS29190 7131671e3c048df4e336aecc70601a62 401 Gene3D G3DSA:3.90.1150.10 280 389 5.7E-30 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS29190 7131671e3c048df4e336aecc70601a62 401 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 1 382 51.138 T 29-03-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Y880_RS23695 7ae430ed7126c0d978fe492a1f070331 255 SUPERFAMILY SSF52540 1 254 2.15E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23695 7ae430ed7126c0d978fe492a1f070331 255 Gene3D G3DSA:3.40.50.300 2 255 6.4E-50 T 29-03-2018 Y880_RS23695 7ae430ed7126c0d978fe492a1f070331 255 Pfam PF13614 AAA domain 5 183 2.1E-37 T 29-03-2018 IPR025669 AAA domain Y880_RS17300 5cf413743d303a07265d1615f1b2f460 182 Pfam PF05433 Glycine zipper 2TM domain 72 113 2.3E-10 T 29-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 Y880_RS10665 b180eee267a422bd6af96f5ecc0a8a76 486 Pfam PF00361 Proton-conducting membrane transporter 122 419 1.7E-80 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10665 b180eee267a422bd6af96f5ecc0a8a76 486 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 474 17.864 T 29-03-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Y880_RS10665 b180eee267a422bd6af96f5ecc0a8a76 486 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 8 473 1.5E-128 T 29-03-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Y880_RS05190 f11524b4cbc5f06f1a2720fa2ca1f07e 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 102 122 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Y880_RS05190 f11524b4cbc5f06f1a2720fa2ca1f07e 261 SUPERFAMILY SSF52096 7 260 1.38E-88 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS05190 f11524b4cbc5f06f1a2720fa2ca1f07e 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 260 7.5E-73 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS05190 f11524b4cbc5f06f1a2720fa2ca1f07e 261 Gene3D G3DSA:1.10.12.10 222 259 9.4E-21 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS05190 f11524b4cbc5f06f1a2720fa2ca1f07e 261 Gene3D G3DSA:3.90.226.10 7 221 5.9E-70 T 29-03-2018 Y880_RS13955 939d43e7c5c685bbfaf9dd7996a4d47d 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 274 1.6E-13 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS13955 939d43e7c5c685bbfaf9dd7996a4d47d 281 SUPERFAMILY SSF161098 13 281 1.78E-61 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS13955 939d43e7c5c685bbfaf9dd7996a4d47d 281 Gene3D G3DSA:1.10.3720.10 9 268 1.1E-35 T 29-03-2018 Y880_RS24055 d12fb1ec28206faec0648f08f1de62fe 480 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 18 440 1.7E-45 T 29-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 Y880_RS24055 d12fb1ec28206faec0648f08f1de62fe 480 PIRSF PIRSF002744 1 464 4.0E-100 T 29-03-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 Y880_RS25655 fb0bbd4c8eb2ce9ad98d1164fc4a8421 257 Gene3D G3DSA:3.40.50.620 15 257 2.8E-40 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS25655 fb0bbd4c8eb2ce9ad98d1164fc4a8421 257 SMART SM00893 12 190 1.0E-5 T 29-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y880_RS25655 fb0bbd4c8eb2ce9ad98d1164fc4a8421 257 SUPERFAMILY SSF52402 24 217 1.19E-25 T 29-03-2018 Y880_RS25655 fb0bbd4c8eb2ce9ad98d1164fc4a8421 257 Pfam PF01012 Electron transfer flavoprotein domain 27 185 1.3E-17 T 29-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y880_RS08740 389d93d936b9e09ea5dbe67ca1fc4e84 230 Gene3D G3DSA:3.40.50.360 18 215 8.4E-45 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS08740 389d93d936b9e09ea5dbe67ca1fc4e84 230 Pfam PF03358 NADPH-dependent FMN reductase 24 166 7.5E-27 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y880_RS08740 389d93d936b9e09ea5dbe67ca1fc4e84 230 SUPERFAMILY SSF52218 21 217 1.3E-62 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS08740 389d93d936b9e09ea5dbe67ca1fc4e84 230 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 20 216 9.5E-122 T 29-03-2018 IPR014063 Arsenate resistance ArsH Y880_RS24965 09f206c15b21646fe85f43cb614f25a0 950 Pfam PF01295 Adenylate cyclase, class-I 244 844 4.4E-120 T 29-03-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 Y880_RS24965 09f206c15b21646fe85f43cb614f25a0 950 PIRSF PIRSF001444 16 931 0.0 T 29-03-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 Y880_RS24965 09f206c15b21646fe85f43cb614f25a0 950 Pfam PF12633 Adenylate cyclase NT domain 21 217 1.5E-71 T 29-03-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 Gene3D G3DSA:3.30.450.40 262 429 3.0E-6 T 29-03-2018 IPR029016 GAF domain-like Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 SMART SM00304 192 244 6.2E-14 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 Pfam PF07730 Histidine kinase 411 477 1.8E-17 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 SUPERFAMILY SSF55874 508 608 7.2E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 PIRSF PIRSF003167 17 622 8.8E-198 T 29-03-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 Gene3D G3DSA:1.10.287.1060 221 261 0.31 T 29-03-2018 Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 SMART SM00387 517 611 1.8E-9 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 Pfam PF00672 HAMP domain 194 240 7.9E-13 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 518 607 5.5E-8 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 62 85 8.9E-7 T 29-03-2018 IPR029095 NarX-like, N-terminal Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 Gene3D G3DSA:3.30.565.10 476 612 7.3E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS17600 f8513ef64e8fe8a77995c2eac74b3b84 622 SUPERFAMILY SSF158472 193 242 1.06E-9 T 29-03-2018 Y880_RS13915 74df8d7102614e9c0aacebb959b333a0 220 SUPERFAMILY SSF51569 10 213 6.04E-67 T 29-03-2018 Y880_RS13915 74df8d7102614e9c0aacebb959b333a0 220 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 12 213 4.0E-86 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y880_RS13915 74df8d7102614e9c0aacebb959b333a0 220 Pfam PF01081 KDPG and KHG aldolase 11 206 7.9E-79 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y880_RS13915 74df8d7102614e9c0aacebb959b333a0 220 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 131 144 - T 29-03-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y880_RS13915 74df8d7102614e9c0aacebb959b333a0 220 Gene3D G3DSA:3.20.20.70 6 220 7.6E-29 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS13915 74df8d7102614e9c0aacebb959b333a0 220 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 43 52 - T 29-03-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y880_RS14845 e3bc66c30207174e02988d8852d86363 156 Gene3D G3DSA:1.20.58.300 4 130 3.3E-25 T 29-03-2018 Y880_RS14845 e3bc66c30207174e02988d8852d86363 156 Pfam PF05130 FlgN protein 2 145 1.6E-31 T 29-03-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Y880_RS14845 e3bc66c30207174e02988d8852d86363 156 SUPERFAMILY SSF140566 6 130 3.4E-29 T 29-03-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Y880_RS19050 df436de628992cb39e7d59055c89c197 301 Gene3D G3DSA:3.40.50.1980 24 143 5.1E-16 T 29-03-2018 Y880_RS19050 df436de628992cb39e7d59055c89c197 301 SUPERFAMILY SSF53807 29 287 6.28E-38 T 29-03-2018 Y880_RS19050 df436de628992cb39e7d59055c89c197 301 Gene3D G3DSA:3.40.50.1980 144 301 9.6E-29 T 29-03-2018 Y880_RS19050 df436de628992cb39e7d59055c89c197 301 Pfam PF01497 Periplasmic binding protein 33 280 1.4E-41 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 Y880_RS10150 2a03d2178826fda63ecdcd5622c477f4 361 SUPERFAMILY SSF46689 291 341 1.08E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS10150 2a03d2178826fda63ecdcd5622c477f4 361 Gene3D G3DSA:1.10.10.60 290 355 1.1E-12 T 29-03-2018 Y880_RS10150 2a03d2178826fda63ecdcd5622c477f4 361 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 3.1E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS10150 2a03d2178826fda63ecdcd5622c477f4 361 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 3.1E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS10150 2a03d2178826fda63ecdcd5622c477f4 361 SMART SM00342 255 338 4.9E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS10150 2a03d2178826fda63ecdcd5622c477f4 361 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 31 212 5.4E-45 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS10150 2a03d2178826fda63ecdcd5622c477f4 361 Pfam PF12833 Helix-turn-helix domain 262 339 5.0E-15 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS10795 a4295abd9cf297241391450d70106ace 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS10795 a4295abd9cf297241391450d70106ace 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 6.6E-7 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21855 e20f2020ab6b774b6f89e2616cef6360 412 Gene3D G3DSA:3.60.60.10 1 341 5.3E-35 T 29-03-2018 Y880_RS21855 e20f2020ab6b774b6f89e2616cef6360 412 Pfam PF03577 Peptidase family C69 11 214 1.8E-8 T 29-03-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 Y880_RS24795 61382a180d225ed62a511e81dfb0a47a 662 Gene3D G3DSA:3.40.50.1110 404 653 1.5E-8 T 29-03-2018 Y880_RS24795 61382a180d225ed62a511e81dfb0a47a 662 Pfam PF01757 Acyltransferase family 8 326 1.1E-29 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 Gene3D G3DSA:2.40.50.140 40 98 1.2E-18 T 29-03-2018 Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 45 338 35.983 T 29-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 Gene3D G3DSA:1.10.40.50 275 338 3.1E-20 T 29-03-2018 Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 Gene3D G3DSA:3.40.50.300 110 273 5.8E-24 T 29-03-2018 Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 Pfam PF03193 RsgA GTPase 100 273 1.5E-52 T 29-03-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 78 330 1.3E-75 T 29-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 SUPERFAMILY SSF50249 45 103 6.17E-5 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS23285 f29a525602ef934df8224db1785a24d0 339 SUPERFAMILY SSF52540 113 334 3.1E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00870 5f0bf772ddb237edbacbff498fd05084 375 SUPERFAMILY SSF56112 21 306 2.19E-25 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS00870 5f0bf772ddb237edbacbff498fd05084 375 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 147 159 - T 29-03-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 Y880_RS00870 5f0bf772ddb237edbacbff498fd05084 375 Pfam PF00069 Protein kinase domain 128 230 4.4E-13 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y880_RS00870 5f0bf772ddb237edbacbff498fd05084 375 SMART SM00220 21 299 2.9E-6 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y880_RS00870 5f0bf772ddb237edbacbff498fd05084 375 Gene3D G3DSA:1.10.510.10 13 310 2.6E-28 T 29-03-2018 Y880_RS19815 b93da20bd71e774dd2ae6e6526687ba6 496 SMART SM00382 25 331 5.3E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS19815 b93da20bd71e774dd2ae6e6526687ba6 496 SUPERFAMILY SSF52540 7 386 1.82E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19815 b93da20bd71e774dd2ae6e6526687ba6 496 Gene3D G3DSA:3.40.50.300 4 347 2.9E-24 T 29-03-2018 Y880_RS19815 b93da20bd71e774dd2ae6e6526687ba6 496 Pfam PF05872 Bacterial protein of unknown function (DUF853) 9 495 1.1E-227 T 29-03-2018 IPR033186 Helicase HerA-like C-terminal Y880_RS00505 e1977a155210a47d0b6f45374adfa147 134 Pfam PF09394 Chagasin family peptidase inhibitor I42 41 130 6.9E-22 T 29-03-2018 IPR018990 Proteinase inhibitor I42, chagasin Y880_RS00505 e1977a155210a47d0b6f45374adfa147 134 SUPERFAMILY SSF141066 32 133 1.44E-27 T 29-03-2018 IPR018990 Proteinase inhibitor I42, chagasin Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 Gene3D G3DSA:1.10.10.10 1 83 8.9E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 Gene3D G3DSA:3.40.190.10 174 254 4.1E-23 T 29-03-2018 Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 Gene3D G3DSA:3.40.190.10 88 173 2.9E-14 T 29-03-2018 Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 8.0E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 SUPERFAMILY SSF46785 1 87 1.33E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 Pfam PF03466 LysR substrate binding domain 87 286 5.1E-47 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS13720 a5d7258747e46deef42901de44c8aacd 306 SUPERFAMILY SSF53850 89 287 1.26E-47 T 29-03-2018 Y880_RS17705 9b720adc167d601bb9184032b95ae5a3 325 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y880_RS17705 9b720adc167d601bb9184032b95ae5a3 325 Gene3D G3DSA:3.40.50.720 1 111 4.2E-27 T 29-03-2018 Y880_RS17705 9b720adc167d601bb9184032b95ae5a3 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 286 1.9E-58 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y880_RS17705 9b720adc167d601bb9184032b95ae5a3 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 318 7.7E-28 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Y880_RS17705 9b720adc167d601bb9184032b95ae5a3 325 Gene3D G3DSA:3.40.50.720 112 286 4.7E-54 T 29-03-2018 Y880_RS17705 9b720adc167d601bb9184032b95ae5a3 325 SUPERFAMILY SSF52283 1 133 6.05E-28 T 29-03-2018 Y880_RS17705 9b720adc167d601bb9184032b95ae5a3 325 SUPERFAMILY SSF51735 100 287 9.72E-57 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS25500 63f41b237f993ff435f964faffe0973c 134 Gene3D G3DSA:3.10.129.10 3 133 5.2E-28 T 29-03-2018 Y880_RS25500 63f41b237f993ff435f964faffe0973c 134 Pfam PF03061 Thioesterase superfamily 29 103 1.0E-15 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS25500 63f41b237f993ff435f964faffe0973c 134 SUPERFAMILY SSF54637 9 131 3.58E-32 T 29-03-2018 IPR029069 HotDog domain Y880_RS05780 a71136095dead36f9e59dc4e57215bba 123 Pfam PF13417 Glutathione S-transferase, N-terminal domain 45 121 4.3E-12 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS05780 a71136095dead36f9e59dc4e57215bba 123 Gene3D G3DSA:3.40.30.10 25 123 2.0E-15 T 29-03-2018 Y880_RS05780 a71136095dead36f9e59dc4e57215bba 123 SUPERFAMILY SSF52833 43 121 5.46E-19 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS17390 7599df1aca4aa5c44379813f0a705b1c 325 Gene3D G3DSA:3.40.50.2300 155 289 9.3E-23 T 29-03-2018 Y880_RS17390 7599df1aca4aa5c44379813f0a705b1c 325 Pfam PF04392 ABC transporter substrate binding protein 32 323 1.5E-123 T 29-03-2018 IPR007487 ABC transporter, substrate-binding protein Y880_RS17390 7599df1aca4aa5c44379813f0a705b1c 325 SUPERFAMILY SSF53822 37 286 1.73E-24 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS17390 7599df1aca4aa5c44379813f0a705b1c 325 Gene3D G3DSA:3.40.50.2300 29 154 1.9E-21 T 29-03-2018 Y880_RS00530 ec6e3a645903d2fa2ee65610947268aa 506 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS00530 ec6e3a645903d2fa2ee65610947268aa 506 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 491 9.5E-228 T 29-03-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 Y880_RS00530 ec6e3a645903d2fa2ee65610947268aa 506 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 Y880_RS00530 ec6e3a645903d2fa2ee65610947268aa 506 Pfam PF00474 Sodium:solute symporter family 35 437 9.8E-139 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS00530 ec6e3a645903d2fa2ee65610947268aa 506 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 8.0E-124 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 392 643 1.7E-10 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 Gene3D G3DSA:3.20.20.70 1 381 5.1E-102 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 Gene3D G3DSA:3.40.50.720 382 501 7.9E-21 T 29-03-2018 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 392 414 3.9E-7 T 29-03-2018 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 609 623 3.9E-7 T 29-03-2018 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 660 667 3.9E-7 T 29-03-2018 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 SUPERFAMILY SSF51395 4 370 5.64E-98 T 29-03-2018 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 Gene3D G3DSA:3.50.50.60 542 686 1.1E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 SUPERFAMILY SSF51905 380 683 5.83E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 Gene3D G3DSA:3.40.50.720 502 541 0.4 T 29-03-2018 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 343 1.1E-62 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 608 624 1.9E-5 T 29-03-2018 Y880_RS25640 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 393 412 1.9E-5 T 29-03-2018 Y880_RS15290 9b6485fc3e7117f762f3df0ab97fea36 185 Gene3D G3DSA:3.30.70.100 4 101 1.7E-14 T 29-03-2018 Y880_RS15290 9b6485fc3e7117f762f3df0ab97fea36 185 SUPERFAMILY SSF54909 3 103 1.12E-18 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS12810 b20dad7df38139792dd736c2e6e04761 271 SUPERFAMILY SSF56752 4 263 5.76E-74 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Y880_RS12810 b20dad7df38139792dd736c2e6e04761 271 Gene3D G3DSA:3.30.470.10 2 111 8.4E-28 T 29-03-2018 Y880_RS12810 b20dad7df38139792dd736c2e6e04761 271 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 4 263 7.9E-89 T 29-03-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 Y880_RS12810 b20dad7df38139792dd736c2e6e04761 271 Pfam PF01063 Amino-transferase class IV 25 246 2.2E-48 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Y880_RS12810 b20dad7df38139792dd736c2e6e04761 271 Gene3D G3DSA:3.20.10.10 112 271 6.9E-43 T 29-03-2018 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 Gene3D G3DSA:4.10.520.10 1 90 7.8E-33 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 SUPERFAMILY SSF47729 1 90 2.94E-31 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.7E-32 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 SMART SM00411 1 90 9.4E-43 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.6E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.6E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS06145 e5a40123298533bd77ac5fd6af139ed8 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.6E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y880_RS10110 fdb6f83beaf7c4825affc16826327d60 347 Pfam PF03741 Integral membrane protein TerC family 82 290 2.2E-60 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y880_RS10110 fdb6f83beaf7c4825affc16826327d60 347 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 16 321 6.4E-125 T 29-03-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 Y880_RS08370 f3aa0144263752b01da2705c35388211 417 Gene3D G3DSA:3.90.1150.10 302 417 1.6E-14 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS08370 f3aa0144263752b01da2705c35388211 417 SUPERFAMILY SSF53383 10 411 3.63E-100 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS08370 f3aa0144263752b01da2705c35388211 417 Pfam PF00202 Aminotransferase class-III 22 407 1.6E-73 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS08370 f3aa0144263752b01da2705c35388211 417 Gene3D G3DSA:3.40.640.10 48 301 3.3E-60 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS08370 f3aa0144263752b01da2705c35388211 417 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 233 269 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS08370 f3aa0144263752b01da2705c35388211 417 PIRSF PIRSF000521 1 130 3.4E-5 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS08370 f3aa0144263752b01da2705c35388211 417 PIRSF PIRSF000521 123 156 1.5 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS08370 f3aa0144263752b01da2705c35388211 417 PIRSF PIRSF000521 183 414 4.7E-18 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 334 81.382 T 29-03-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 1.0E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 1.0E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 1.0E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 1.0E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 312 323 1.0E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 331 4.2E-54 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 3.2E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 3.2E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 3.2E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 298 321 3.2E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 9.3E-46 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 333 2.6E-134 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 Gene3D G3DSA:3.40.50.1370 6 162 6.4E-54 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 SUPERFAMILY SSF53671 4 334 5.76E-100 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 Gene3D G3DSA:3.40.50.1370 163 335 5.0E-52 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS24450 b0283a87d978d4b4273e1f74594a55dd 336 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 PIRSF PIRSF036402 1 151 5.6E-52 T 29-03-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 Gene3D G3DSA:3.30.70.790 73 157 6.4E-33 T 29-03-2018 Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 SUPERFAMILY SSF69287 1 71 1.23E-16 T 29-03-2018 IPR004029 UreE urease accessory, N-terminal Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 SMART SM00988 1 66 2.9E-24 T 29-03-2018 IPR004029 UreE urease accessory, N-terminal Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 Pfam PF05194 UreE urease accessory protein, C-terminal domain 73 150 3.8E-28 T 29-03-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 140 24.207 T 29-03-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 Gene3D G3DSA:2.60.260.20 1 72 7.6E-21 T 29-03-2018 Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 SUPERFAMILY SSF69737 73 139 7.98E-22 T 29-03-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 Y880_RS22970 8e1703156a0c8c2e1327bcfa813ef313 167 Pfam PF02814 UreE urease accessory protein, N-terminal domain 6 66 7.6E-21 T 29-03-2018 IPR004029 UreE urease accessory, N-terminal Y880_RS12210 88ea5b16c74d41b6e4035955aade0bbf 151 SMART SM00347 35 133 1.2E-22 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12210 88ea5b16c74d41b6e4035955aade0bbf 151 SUPERFAMILY SSF46785 8 148 2.61E-35 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12210 88ea5b16c74d41b6e4035955aade0bbf 151 Pfam PF01047 MarR family 42 100 1.5E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12210 88ea5b16c74d41b6e4035955aade0bbf 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 3.0E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12210 88ea5b16c74d41b6e4035955aade0bbf 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 3.0E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12210 88ea5b16c74d41b6e4035955aade0bbf 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 3.0E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12210 88ea5b16c74d41b6e4035955aade0bbf 151 Gene3D G3DSA:1.10.10.10 3 149 1.9E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS18250 f5864cc85b9dafc0de50e84f2d15c8ac 340 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 44 332 6.5E-119 T 29-03-2018 IPR011757 Lytic transglycosylase MltB Y880_RS18250 f5864cc85b9dafc0de50e84f2d15c8ac 340 Gene3D G3DSA:1.10.530.10 214 339 1.3E-31 T 29-03-2018 Y880_RS18250 f5864cc85b9dafc0de50e84f2d15c8ac 340 SUPERFAMILY SSF53955 30 334 4.87E-96 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS18250 f5864cc85b9dafc0de50e84f2d15c8ac 340 Gene3D G3DSA:1.10.8.350 104 208 2.5E-38 T 29-03-2018 Y880_RS18250 f5864cc85b9dafc0de50e84f2d15c8ac 340 Gene3D G3DSA:1.10.8.350 34 103 5.3E-7 T 29-03-2018 Y880_RS18250 f5864cc85b9dafc0de50e84f2d15c8ac 340 Pfam PF13406 Transglycosylase SLT domain 40 330 1.5E-101 T 29-03-2018 IPR031304 Transglycosylase SLT domain 2 Y880_RS17815 5b6267eb0e023d157e67737999c14635 160 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 2 149 6.4E-70 T 29-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 Y880_RS17815 5b6267eb0e023d157e67737999c14635 160 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 1 155 35.449 T 29-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 Y880_RS17815 5b6267eb0e023d157e67737999c14635 160 Pfam PF01967 MoaC family 13 147 7.6E-56 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 Y880_RS17815 5b6267eb0e023d157e67737999c14635 160 Gene3D G3DSA:3.30.70.640 1 155 1.9E-68 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 Y880_RS17815 5b6267eb0e023d157e67737999c14635 160 SUPERFAMILY SSF55040 9 152 3.79E-60 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 Y880_RS28460 017f748384755b133aef000d940ba85c 83 Gene3D G3DSA:3.30.70.20 51 79 0.027 T 29-03-2018 Y880_RS28460 017f748384755b133aef000d940ba85c 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y880_RS28460 017f748384755b133aef000d940ba85c 83 Gene3D G3DSA:3.30.70.20 3 50 2.2E-13 T 29-03-2018 Y880_RS28460 017f748384755b133aef000d940ba85c 83 SUPERFAMILY SSF54862 5 76 1.08E-19 T 29-03-2018 Y880_RS28460 017f748384755b133aef000d940ba85c 83 Pfam PF00037 4Fe-4S binding domain 5 25 3.3E-6 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 Gene3D G3DSA:1.10.10.60 164 222 7.5E-11 T 29-03-2018 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 Pfam PF12833 Helix-turn-helix domain 188 264 1.0E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 219 260 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 SUPERFAMILY SSF51182 13 219 2.05E-24 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 Gene3D G3DSA:1.10.10.60 223 266 1.0E-8 T 29-03-2018 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 SMART SM00342 182 264 5.1E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 233 248 7.9E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 264 7.9E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 SUPERFAMILY SSF46689 218 263 1.39E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 Pfam PF07883 Cupin domain 33 93 1.2E-6 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS17360 f6c59e2b47a84774b16c2d57d9e3b68a 270 Gene3D G3DSA:2.60.120.10 2 103 1.2E-10 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS29265 1ad986ce421620bc4233d9cf0ee99a55 150 Gene3D G3DSA:1.10.10.10 1 53 1.8E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29265 1ad986ce421620bc4233d9cf0ee99a55 150 Pfam PF13404 AsnC-type helix-turn-helix domain 1 45 2.6E-8 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS29265 1ad986ce421620bc4233d9cf0ee99a55 150 SMART SM00344 1 108 0.0059 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS29265 1ad986ce421620bc4233d9cf0ee99a55 150 Gene3D G3DSA:3.30.70.920 54 131 5.4E-10 T 29-03-2018 Y880_RS02840 0b4c8f0341e68aec693ef33c136d55c5 197 Gene3D G3DSA:1.10.287.110 107 193 1.5E-9 T 29-03-2018 IPR001623 DnaJ domain Y880_RS02840 0b4c8f0341e68aec693ef33c136d55c5 197 SMART SM00271 141 195 0.0048 T 29-03-2018 IPR001623 DnaJ domain Y880_RS02840 0b4c8f0341e68aec693ef33c136d55c5 197 Pfam PF12339 DNA-J related protein 11 134 5.9E-43 T 29-03-2018 IPR021059 DnaJ-related protein, N-terminal Y880_RS02840 0b4c8f0341e68aec693ef33c136d55c5 197 SUPERFAMILY SSF46565 137 192 1.44E-12 T 29-03-2018 IPR001623 DnaJ domain Y880_RS06360 0b95ca51eec0a239486fe7848eb5b4e4 154 Gene3D G3DSA:3.90.1720.10 4 125 4.1E-8 T 29-03-2018 Y880_RS06360 0b95ca51eec0a239486fe7848eb5b4e4 154 SUPERFAMILY SSF54001 7 100 1.57E-6 T 29-03-2018 Y880_RS10690 ae5852b7da6dfa509bb78a9ac3156ccd 441 Pfam PF03553 Na+/H+ antiporter family 151 435 4.6E-76 T 29-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Y880_RS10690 ae5852b7da6dfa509bb78a9ac3156ccd 441 PRINTS PR00173 Glutamate-aspartate symporter signature 15 35 1.4E-6 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS10690 ae5852b7da6dfa509bb78a9ac3156ccd 441 PRINTS PR00173 Glutamate-aspartate symporter signature 374 393 1.4E-6 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS10690 ae5852b7da6dfa509bb78a9ac3156ccd 441 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 1.4E-6 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS10690 ae5852b7da6dfa509bb78a9ac3156ccd 441 PRINTS PR00173 Glutamate-aspartate symporter signature 253 272 1.4E-6 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS10690 ae5852b7da6dfa509bb78a9ac3156ccd 441 Pfam PF13726 Na+-H+ antiporter family 2 88 4.8E-32 T 29-03-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 Gene3D G3DSA:3.40.50.880 1 227 2.0E-30 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 Gene3D G3DSA:1.10.10.60 271 322 1.5E-12 T 29-03-2018 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 Gene3D G3DSA:1.10.10.60 228 270 8.3E-11 T 29-03-2018 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 264 306 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 SMART SM00342 227 310 1.3E-33 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 294 310 4.8E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 294 4.8E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 SUPERFAMILY SSF46689 210 261 1.43E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 SUPERFAMILY SSF52317 5 192 3.41E-24 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 SUPERFAMILY SSF46689 263 314 1.16E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS01235 e26a1ca480701655494f807bc7f98610 329 Pfam PF12833 Helix-turn-helix domain 233 311 7.1E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS20330 4c5afba7d803b5dbd2d90ff6fdb78903 303 Gene3D G3DSA:3.30.1700.10 128 298 2.7E-70 T 29-03-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS20330 4c5afba7d803b5dbd2d90ff6fdb78903 303 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 7.5E-122 T 29-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS20330 4c5afba7d803b5dbd2d90ff6fdb78903 303 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 47.077 T 29-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS20330 4c5afba7d803b5dbd2d90ff6fdb78903 303 Gene3D G3DSA:3.30.230.20 1 127 9.9E-51 T 29-03-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS20330 4c5afba7d803b5dbd2d90ff6fdb78903 303 SUPERFAMILY SSF54211 3 124 6.98E-43 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS20330 4c5afba7d803b5dbd2d90ff6fdb78903 303 SUPERFAMILY SSF54211 134 277 1.82E-52 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS20330 4c5afba7d803b5dbd2d90ff6fdb78903 303 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 4.1E-109 T 29-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 Y880_RS03240 645b7d20d25ddcab4f3dd8ea326940c2 371 SUPERFAMILY SSF54373 204 304 2.75E-12 T 29-03-2018 Y880_RS03240 645b7d20d25ddcab4f3dd8ea326940c2 371 SUPERFAMILY SSF51905 4 208 3.24E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS03240 645b7d20d25ddcab4f3dd8ea326940c2 371 SUPERFAMILY SSF51905 305 363 3.24E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS03240 645b7d20d25ddcab4f3dd8ea326940c2 371 Gene3D G3DSA:3.50.50.60 1 64 5.9E-6 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS03240 645b7d20d25ddcab4f3dd8ea326940c2 371 Gene3D G3DSA:3.30.9.10 65 305 1.3E-35 T 29-03-2018 Y880_RS03240 645b7d20d25ddcab4f3dd8ea326940c2 371 Pfam PF01266 FAD dependent oxidoreductase 5 343 1.3E-59 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS15055 5cbbaa1244295dc488b6541651e8b29c 137 Gene3D G3DSA:3.10.180.10 6 135 3.3E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15055 5cbbaa1244295dc488b6541651e8b29c 137 SUPERFAMILY SSF54593 12 130 8.99E-30 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15055 5cbbaa1244295dc488b6541651e8b29c 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 124 5.2E-19 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 Pfam PF12833 Helix-turn-helix domain 185 262 3.4E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 Gene3D G3DSA:1.10.10.60 222 266 4.2E-15 T 29-03-2018 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 3.0E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 3.0E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 SMART SM00342 179 261 8.8E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 SUPERFAMILY SSF46689 166 213 8.06E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 SUPERFAMILY SSF51215 22 146 3.79E-16 T 29-03-2018 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 Gene3D G3DSA:1.10.10.60 164 221 1.1E-10 T 29-03-2018 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 SUPERFAMILY SSF46689 216 263 2.91E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 Gene3D G3DSA:2.60.120.280 12 149 2.3E-12 T 29-03-2018 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 216 257 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS25330 1b33dc88f1b2166040317297b7ae2acc 266 Pfam PF02311 AraC-like ligand binding domain 13 142 1.9E-25 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS12845 9fe1173620f5ba5a6d6471bd6409fe54 178 Pfam PF02620 Uncharacterized ACR, COG1399 62 173 1.0E-18 T 29-03-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD Y880_RS29965 4edaac4f027dfded1d5b16dcaf0d68d1 140 Pfam PF02566 OsmC-like protein 34 132 2.8E-19 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS29965 4edaac4f027dfded1d5b16dcaf0d68d1 140 SUPERFAMILY SSF82784 1 137 1.83E-41 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS29965 4edaac4f027dfded1d5b16dcaf0d68d1 140 Gene3D G3DSA:2.20.25.10 1 21 7.8E-15 T 29-03-2018 Y880_RS29965 4edaac4f027dfded1d5b16dcaf0d68d1 140 Gene3D G3DSA:3.30.300.20 22 140 8.4E-32 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS24975 e17b249327d3b6e53a338b0b8c34daf5 134 PIRSF PIRSF006092 1 30 74.0 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y880_RS24975 e17b249327d3b6e53a338b0b8c34daf5 134 PIRSF PIRSF006092 27 126 7.4E-24 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y880_RS24975 e17b249327d3b6e53a338b0b8c34daf5 134 SUPERFAMILY SSF54534 48 125 3.66E-16 T 29-03-2018 Y880_RS24975 e17b249327d3b6e53a338b0b8c34daf5 134 Pfam PF14760 Rnk N-terminus 4 43 4.7E-15 T 29-03-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain Y880_RS24975 e17b249327d3b6e53a338b0b8c34daf5 134 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 6.9E-20 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y880_RS24975 e17b249327d3b6e53a338b0b8c34daf5 134 Gene3D G3DSA:3.10.50.30 44 134 1.4E-22 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y880_RS24975 e17b249327d3b6e53a338b0b8c34daf5 134 Gene3D G3DSA:1.10.286.20 3 43 3.2E-16 T 29-03-2018 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 Gene3D G3DSA:1.10.287.950 330 447 2.1E-7 T 29-03-2018 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 Gene3D G3DSA:1.10.287.950 46 307 0.008 T 29-03-2018 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 Gene3D G3DSA:1.10.287.950 448 678 1.7E-52 T 29-03-2018 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 SMART SM00283 413 674 2.0E-96 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 459 642 1.0E-43 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 SUPERFAMILY SSF58104 374 675 2.09E-67 T 29-03-2018 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 39 148 9.4E-26 T 29-03-2018 IPR029095 NarX-like, N-terminal Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 511 538 4.2E-20 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 4.2E-20 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS28715 319eae4c91b702e9136b3d8bcaae752b 682 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 540 569 4.2E-20 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 SMART SM00388 756 822 1.1E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 Pfam PF00989 PAS fold 635 718 7.1E-6 T 29-03-2018 IPR013767 PAS fold GO:0006355 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 Gene3D G3DSA:1.10.287.130 750 818 4.1E-12 T 29-03-2018 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 SUPERFAMILY SSF47384 750 819 1.79E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 Pfam PF00512 His Kinase A (phospho-acceptor) domain 757 819 2.0E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 SMART SM00091 632 700 3.2E-4 T 29-03-2018 IPR000014 PAS domain Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 SMART SM00387 865 977 1.2E-36 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 633 748 6.0E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 Gene3D G3DSA:3.30.450.20 619 749 1.5E-15 T 29-03-2018 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 865 975 1.4E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 Gene3D G3DSA:3.30.565.10 824 982 5.3E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 SUPERFAMILY SSF55874 817 978 2.23E-40 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 SUPERFAMILY SSF55785 623 716 5.33E-9 T 29-03-2018 IPR000014 PAS domain Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 902 916 2.7E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 933 951 2.7E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 920 930 2.7E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS22105 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 961 974 2.7E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS19055 8e0cfa885ba81138e3af3dbdd189f71c 229 SUPERFAMILY SSF81345 5 228 7.85E-44 T 29-03-2018 IPR029022 ABC transporter, BtuC-like Y880_RS19055 8e0cfa885ba81138e3af3dbdd189f71c 229 Pfam PF01032 FecCD transport family 8 227 1.0E-51 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 Y880_RS19055 8e0cfa885ba81138e3af3dbdd189f71c 229 Gene3D G3DSA:1.10.3470.10 1 228 7.6E-36 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS01035 32f1fb27077194a7decd2146bcac03e6 101 Pfam PF01722 BolA-like protein 12 80 9.7E-24 T 29-03-2018 IPR002634 BolA protein Y880_RS01035 32f1fb27077194a7decd2146bcac03e6 101 PIRSF PIRSF003113 1 94 3.8E-29 T 29-03-2018 IPR002634 BolA protein Y880_RS01035 32f1fb27077194a7decd2146bcac03e6 101 Gene3D G3DSA:3.30.300.90 1 87 2.4E-25 T 29-03-2018 Y880_RS01035 32f1fb27077194a7decd2146bcac03e6 101 SUPERFAMILY SSF82657 3 83 4.32E-28 T 29-03-2018 IPR002634 BolA protein Y880_RS16380 a9c7790e5cafa0a47c4ae5cecdff8410 146 SUPERFAMILY SSF54637 1 142 3.67E-53 T 29-03-2018 IPR029069 HotDog domain Y880_RS16380 a9c7790e5cafa0a47c4ae5cecdff8410 146 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 142 4.7E-65 T 29-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS16380 a9c7790e5cafa0a47c4ae5cecdff8410 146 Pfam PF07977 FabA-like domain 11 137 1.2E-38 T 29-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS16380 a9c7790e5cafa0a47c4ae5cecdff8410 146 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 145 36.125 T 29-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y880_RS16380 a9c7790e5cafa0a47c4ae5cecdff8410 146 Gene3D G3DSA:3.10.129.10 1 145 3.7E-57 T 29-03-2018 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 29-03-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 SUPERFAMILY SSF88659 123 187 7.85E-18 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 3 190 6.9E-99 T 29-03-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 Pfam PF08281 Sigma-70, region 4 132 181 2.9E-18 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 Pfam PF04542 Sigma-70 region 2 25 92 1.1E-17 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 186 5.7E-31 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 Gene3D G3DSA:1.10.1740.10 1 115 4.0E-31 T 29-03-2018 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 SUPERFAMILY SSF88946 1 108 1.38E-32 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00425 86dda65e985ac48ceba67694921bb7c1 193 Gene3D G3DSA:1.10.10.10 116 189 3.0E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19140 74746c4cb99f65b126d8f3a8c3267bfa 307 SUPERFAMILY SSF53850 90 300 2.35E-41 T 29-03-2018 Y880_RS19140 74746c4cb99f65b126d8f3a8c3267bfa 307 Gene3D G3DSA:1.10.10.10 3 84 2.1E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19140 74746c4cb99f65b126d8f3a8c3267bfa 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 6.8E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS19140 74746c4cb99f65b126d8f3a8c3267bfa 307 Pfam PF03466 LysR substrate binding domain 90 294 2.5E-39 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS19140 74746c4cb99f65b126d8f3a8c3267bfa 307 Gene3D G3DSA:3.40.190.10 177 267 1.1E-21 T 29-03-2018 Y880_RS19140 74746c4cb99f65b126d8f3a8c3267bfa 307 Gene3D G3DSA:3.40.190.10 89 176 1.9E-20 T 29-03-2018 Y880_RS19140 74746c4cb99f65b126d8f3a8c3267bfa 307 SUPERFAMILY SSF46785 4 112 3.95E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 Pfam PF12833 Helix-turn-helix domain 220 299 1.4E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 5.5E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 5.5E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 293 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 Gene3D G3DSA:1.10.10.60 255 304 8.0E-14 T 29-03-2018 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 SUPERFAMILY SSF46689 197 247 8.98E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 SMART SM00342 214 297 4.4E-27 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 Pfam PF12852 Cupin 2 182 5.9E-31 T 29-03-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 Gene3D G3DSA:2.60.120.280 17 182 5.5E-9 T 29-03-2018 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 Gene3D G3DSA:1.10.10.60 194 254 2.5E-10 T 29-03-2018 Y880_RS17025 9e43934a94d54c4a3f4077d936ab12ff 304 SUPERFAMILY SSF46689 250 299 2.27E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS19720 b803505bed5c804189c649e7b0666fea 401 TIGRFAM TIGR00937 2A51: chromate efflux transporter 18 394 2.2E-103 T 29-03-2018 IPR014047 Chromate transporter, long chain Y880_RS19720 b803505bed5c804189c649e7b0666fea 401 Pfam PF02417 Chromate transporter 228 394 6.4E-41 T 29-03-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Y880_RS19720 b803505bed5c804189c649e7b0666fea 401 Pfam PF02417 Chromate transporter 13 177 3.1E-34 T 29-03-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Y880_RS19720 b803505bed5c804189c649e7b0666fea 401 PIRSF PIRSF004810 2 400 9.2E-130 T 29-03-2018 IPR014047 Chromate transporter, long chain Y880_RS16275 613469fcdc84575c17b4145ededbb337 211 Gene3D G3DSA:3.40.50.150 1 208 1.2E-36 T 29-03-2018 Y880_RS16275 613469fcdc84575c17b4145ededbb337 211 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 132 147 - T 29-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Y880_RS16275 613469fcdc84575c17b4145ededbb337 211 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 7 206 3.9E-65 T 29-03-2018 Y880_RS16275 613469fcdc84575c17b4145ededbb337 211 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 2 207 2.2E-69 T 29-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Y880_RS16275 613469fcdc84575c17b4145ededbb337 211 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 2 211 39.437 T 29-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Y880_RS16275 613469fcdc84575c17b4145ededbb337 211 SUPERFAMILY SSF53335 4 207 3.94E-43 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 SMART SM00859 6 120 2.4E-22 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 SUPERFAMILY SSF51735 5 154 6.4E-34 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 SUPERFAMILY SSF55347 135 319 1.6E-47 T 29-03-2018 Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 318 4.7E-33 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 118 1.0E-23 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 Gene3D G3DSA:3.30.360.10 143 314 2.6E-41 T 29-03-2018 Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 PIRSF PIRSF000148 4 336 5.2E-86 T 29-03-2018 Y880_RS13605 59dd88adb32244ea262b3b5bf6c95be2 336 Gene3D G3DSA:3.40.50.720 1 142 8.4E-23 T 29-03-2018 Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 Pfam PF00005 ABC transporter 349 496 1.8E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 Pfam PF00664 ABC transporter transmembrane region 34 282 1.3E-12 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 16 558 7.9E-253 T 29-03-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 SMART SM00382 358 544 2.6E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 SUPERFAMILY SSF52540 322 556 1.84E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 Gene3D G3DSA:3.40.50.300 332 577 4.8E-61 T 29-03-2018 Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 Gene3D G3DSA:1.20.1560.10 8 318 3.1E-23 T 29-03-2018 Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 SUPERFAMILY SSF90123 19 320 6.8E-45 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Y880_RS03120 d64b259163b2fdfe4724425efe788f32 593 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS09315 fdfaab4c1df9c2ae30fafdcfd4b9b5a3 544 Gene3D G3DSA:1.10.1280.10 306 460 1.8E-4 T 29-03-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 Y880_RS09315 fdfaab4c1df9c2ae30fafdcfd4b9b5a3 544 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 21 7.0E-4 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y880_RS09315 fdfaab4c1df9c2ae30fafdcfd4b9b5a3 544 SUPERFAMILY SSF48056 251 444 8.18E-9 T 29-03-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 Y880_RS11525 bb5f2d0bb445c4b850b470ede09b6401 160 Gene3D G3DSA:3.30.750.24 2 108 7.2E-12 T 29-03-2018 IPR002645 STAS domain Y880_RS11525 bb5f2d0bb445c4b850b470ede09b6401 160 SUPERFAMILY SSF52091 6 106 2.75E-14 T 29-03-2018 IPR002645 STAS domain Y880_RS11525 bb5f2d0bb445c4b850b470ede09b6401 160 Pfam PF01740 STAS domain 7 103 4.2E-6 T 29-03-2018 IPR002645 STAS domain Y880_RS11525 bb5f2d0bb445c4b850b470ede09b6401 160 PIRSF PIRSF029548 1 160 2.0E-106 T 29-03-2018 IPR014557 Uncharacterised conserved protein UCP029548, STAS-type Y880_RS25420 bb4acbc957c14dc42a988bd8bdf22140 151 PIRSF PIRSF029720 19 148 2.0E-56 T 29-03-2018 IPR014558 Uncharacterised conserved lipoprotein Y880_RS25420 bb4acbc957c14dc42a988bd8bdf22140 151 Pfam PF03640 Secreted repeat of unknown function 105 146 3.8E-19 T 29-03-2018 IPR005297 Lipoprotein repeat Y880_RS25420 bb4acbc957c14dc42a988bd8bdf22140 151 Pfam PF03640 Secreted repeat of unknown function 53 91 7.6E-14 T 29-03-2018 IPR005297 Lipoprotein repeat Y880_RS05115 915c9e3a6c891695f3992a8e5fd163d1 78 Pfam PF14333 Domain of unknown function (DUF4389) 8 78 4.8E-25 T 29-03-2018 IPR025498 Protein of unknown function DUF4389 Y880_RS02445 37ac7337e1088bcec3828267cf8c0924 111 PIRSF PIRSF037256 1 111 1.7E-55 T 29-03-2018 IPR017160 Uncharacterised conserved protein UCP037256 Y880_RS15060 1c3a66e8573483ab904cec1d41248c52 715 Pfam PF12801 4Fe-4S binding domain 597 643 9.5E-6 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS15060 1c3a66e8573483ab904cec1d41248c52 715 Pfam PF12801 4Fe-4S binding domain 496 542 6.3E-15 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y880_RS15060 1c3a66e8573483ab904cec1d41248c52 715 SMART SM00900 82 175 1.5E-13 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y880_RS15060 1c3a66e8573483ab904cec1d41248c52 715 Pfam PF04205 FMN-binding domain 85 172 1.5E-6 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y880_RS15060 1c3a66e8573483ab904cec1d41248c52 715 PIRSF PIRSF036354 1 715 0.0 T 29-03-2018 IPR011399 Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0016020|GO:0045893 Y880_RS15060 1c3a66e8573483ab904cec1d41248c52 715 SUPERFAMILY SSF54862 513 529 2.96E-6 T 29-03-2018 Y880_RS15060 1c3a66e8573483ab904cec1d41248c52 715 SUPERFAMILY SSF54862 611 677 2.96E-6 T 29-03-2018 Y880_RS08530 a02eafff660666148413128e5065a52e 367 SUPERFAMILY SSF53756 13 366 2.2E-44 T 29-03-2018 Y880_RS08530 a02eafff660666148413128e5065a52e 367 Pfam PF00534 Glycosyl transferases group 1 199 302 8.6E-11 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS08530 a02eafff660666148413128e5065a52e 367 Pfam PF13439 Glycosyltransferase Family 4 17 183 1.2E-9 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS08530 a02eafff660666148413128e5065a52e 367 Gene3D G3DSA:3.40.50.2000 9 192 1.0E-5 T 29-03-2018 Y880_RS08530 a02eafff660666148413128e5065a52e 367 Gene3D G3DSA:3.40.50.2000 193 360 2.2E-22 T 29-03-2018 Y880_RS03850 c020fe831c1f35b9cc0f8bfab12070eb 759 Pfam PF03958 Bacterial type II/III secretion system short domain 365 490 9.4E-10 T 29-03-2018 IPR005644 NolW-like Y880_RS03850 c020fe831c1f35b9cc0f8bfab12070eb 759 PRINTS PR00811 Bacterial general secretion pathway protein D signature 548 572 1.4E-12 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS03850 c020fe831c1f35b9cc0f8bfab12070eb 759 PRINTS PR00811 Bacterial general secretion pathway protein D signature 714 728 1.4E-12 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS03850 c020fe831c1f35b9cc0f8bfab12070eb 759 PRINTS PR00811 Bacterial general secretion pathway protein D signature 490 500 1.4E-12 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS03850 c020fe831c1f35b9cc0f8bfab12070eb 759 PRINTS PR00811 Bacterial general secretion pathway protein D signature 691 709 1.4E-12 T 29-03-2018 IPR001775 GspD/PilQ family Y880_RS03850 c020fe831c1f35b9cc0f8bfab12070eb 759 Pfam PF00263 Bacterial type II and III secretion system protein 552 726 2.7E-44 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 Pfam PF01022 Bacterial regulatory protein, arsR family 13 58 3.6E-13 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 SMART SM00418 6 88 3.0E-30 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 5.7E-22 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 5.7E-22 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 5.7E-22 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 5.7E-22 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 SUPERFAMILY SSF46785 3 83 2.37E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08725 72315ab1bc35b6156895a44080ccca0d 116 Gene3D G3DSA:1.10.10.10 2 114 1.2E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS14275 b986a04cf5f681245341bacedd089806 352 Pfam PF13343 Bacterial extracellular solute-binding protein 89 313 1.3E-34 T 29-03-2018 Y880_RS14275 b986a04cf5f681245341bacedd089806 352 Gene3D G3DSA:3.40.190.10 170 350 8.5E-20 T 29-03-2018 Y880_RS14275 b986a04cf5f681245341bacedd089806 352 Gene3D G3DSA:3.40.190.10 38 169 5.4E-12 T 29-03-2018 Y880_RS14275 b986a04cf5f681245341bacedd089806 352 SUPERFAMILY SSF53850 36 345 6.73E-52 T 29-03-2018 Y880_RS02395 be7949b424a085aaf2350b5eddfc8f89 398 Gene3D G3DSA:3.30.70.270 219 395 3.8E-60 T 29-03-2018 Y880_RS02395 be7949b424a085aaf2350b5eddfc8f89 398 Pfam PF00990 Diguanylate cyclase, GGDEF domain 227 384 1.6E-46 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02395 be7949b424a085aaf2350b5eddfc8f89 398 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 222 387 1.2E-52 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02395 be7949b424a085aaf2350b5eddfc8f89 398 SMART SM00267 215 388 3.1E-66 T 29-03-2018 IPR000160 GGDEF domain Y880_RS02395 be7949b424a085aaf2350b5eddfc8f89 398 SUPERFAMILY SSF55073 231 387 1.8E-50 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 Pfam PF13616 PPIC-type PPIASE domain 261 360 1.7E-28 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 SUPERFAMILY SSF54534 262 362 2.42E-32 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 300 321 - T 29-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 Gene3D G3DSA:3.10.50.40 498 620 0.35 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 Gene3D G3DSA:3.10.50.40 258 386 5.0E-38 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 Gene3D G3DSA:3.10.50.40 391 497 4.0E-5 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 Gene3D G3DSA:1.10.4030.10 35 168 3.7E-19 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 Gene3D G3DSA:1.10.4030.10 169 257 0.0035 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 Pfam PF13624 SurA N-terminal domain 1 164 2.4E-44 T 29-03-2018 Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 SUPERFAMILY SSF109998 199 236 6.41E-32 T 29-03-2018 IPR027304 Trigger factor/SurA domain Y880_RS06155 4c7286dc774eea045794a97475beb45a 621 SUPERFAMILY SSF109998 40 167 6.41E-32 T 29-03-2018 IPR027304 Trigger factor/SurA domain Y880_RS26250 028f293533cb1f4361f53db7a8f1509b 292 Gene3D G3DSA:3.40.50.1820 8 289 3.3E-38 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS26250 028f293533cb1f4361f53db7a8f1509b 292 Pfam PF12697 Alpha/beta hydrolase family 31 282 1.0E-14 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS26250 028f293533cb1f4361f53db7a8f1509b 292 SUPERFAMILY SSF53474 12 288 2.3E-37 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 1.5E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SMART SM00895 77 201 5.6E-23 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SUPERFAMILY SSF46785 4 71 5.82E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SMART SM00345 9 67 2.5E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Pfam PF07729 FCD domain 77 198 1.2E-26 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Gene3D G3DSA:1.20.120.530 70 217 8.0E-33 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Gene3D G3DSA:1.10.10.10 2 68 5.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26315 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SUPERFAMILY SSF48008 74 210 1.31E-28 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS10720 42500bdd922b972d40696b9b59b7a585 102 Pfam PF03413 Peptidase propeptide and YPEB domain 41 98 1.4E-13 T 29-03-2018 IPR025711 PepSY domain Y880_RS10720 42500bdd922b972d40696b9b59b7a585 102 Gene3D G3DSA:3.10.450.40 9 101 6.1E-13 T 29-03-2018 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 SUPERFAMILY SSF53067 253 492 9.06E-78 T 29-03-2018 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 PIRSF PIRSF000538 2 494 1.3E-169 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 1.8E-73 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 447 4.4E-56 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 491 2.4E-217 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Hamap MF_00186 Glycerol kinase [glpK]. 2 494 54.257 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Gene3D G3DSA:3.30.420.40 248 494 2.3E-74 T 29-03-2018 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Gene3D G3DSA:3.30.420.40 1 247 1.6E-88 T 29-03-2018 Y880_RS16035 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 SUPERFAMILY SSF53067 4 253 2.85E-93 T 29-03-2018 Y880_RS17945 293bdae383efa8c5c0aef6ab6611e4cc 289 Pfam PF13622 Thioesterase-like superfamily 33 282 2.4E-62 T 29-03-2018 Y880_RS17945 293bdae383efa8c5c0aef6ab6611e4cc 289 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 1.9E-91 T 29-03-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247 Y880_RS17945 293bdae383efa8c5c0aef6ab6611e4cc 289 Gene3D G3DSA:3.10.129.10 2 116 1.2E-42 T 29-03-2018 Y880_RS17945 293bdae383efa8c5c0aef6ab6611e4cc 289 SUPERFAMILY SSF54637 5 114 7.46E-41 T 29-03-2018 IPR029069 HotDog domain Y880_RS17945 293bdae383efa8c5c0aef6ab6611e4cc 289 SUPERFAMILY SSF54637 117 285 1.45E-60 T 29-03-2018 IPR029069 HotDog domain Y880_RS17945 293bdae383efa8c5c0aef6ab6611e4cc 289 Gene3D G3DSA:3.10.129.10 131 286 6.2E-55 T 29-03-2018 Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 Pfam PF03466 LysR substrate binding domain 94 295 3.5E-40 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 SUPERFAMILY SSF46785 4 117 5.75E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 Gene3D G3DSA:3.40.190.10 98 180 6.1E-20 T 29-03-2018 Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 Gene3D G3DSA:1.10.10.10 4 88 2.9E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 1.8E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 3.8E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 3.8E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 3.8E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 Gene3D G3DSA:3.40.190.10 181 266 6.1E-21 T 29-03-2018 Y880_RS23085 4fefe3a946e3512a97c3a87d458ba389 312 SUPERFAMILY SSF53850 94 299 4.34E-41 T 29-03-2018 Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 40 146 5.5E-22 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 Gene3D G3DSA:3.30.365.10 460 620 1.6E-52 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 SUPERFAMILY SSF54665 24 148 6.8E-38 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 26 782 0.0 T 29-03-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 Gene3D G3DSA:3.30.365.10 169 277 6.3E-33 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 Gene3D G3DSA:3.30.365.10 621 783 7.3E-63 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 168 710 4.1E-210 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 Gene3D G3DSA:3.90.1170.50 24 147 6.2E-27 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 SUPERFAMILY SSF56003 148 780 1.31E-208 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 SMART SM01008 40 147 4.8E-38 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y880_RS04590 685a807a8958bb1a77097837f23292e3 799 Gene3D G3DSA:3.30.365.10 278 440 7.1E-60 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y880_RS23435 d13bb54fda3c29a927e86ad2f35f5818 470 Pfam PF00324 Amino acid permease 18 452 2.0E-116 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS23435 d13bb54fda3c29a927e86ad2f35f5818 470 PIRSF PIRSF006060 1 466 9.0E-71 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS23435 d13bb54fda3c29a927e86ad2f35f5818 470 ProSitePatterns PS00218 Amino acid permeases signature. 43 74 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 SUPERFAMILY SSF56024 22 114 4.71E-27 T 29-03-2018 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 SUPERFAMILY SSF56024 235 258 4.71E-27 T 29-03-2018 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 SUPERFAMILY SSF56024 296 394 4.71E-27 T 29-03-2018 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 SUPERFAMILY SSF56024 631 695 1.59E-16 T 29-03-2018 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 SUPERFAMILY SSF56024 372 510 1.59E-16 T 29-03-2018 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 SMART SM00155 300 331 7.0 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 SMART SM00155 637 664 0.009 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 Gene3D G3DSA:3.30.870.10 381 714 2.1E-28 T 29-03-2018 Y880_RS24005 66722a779cc27be41d015c1eb335bb44 745 Gene3D G3DSA:3.30.870.10 27 380 2.0E-30 T 29-03-2018 Y880_RS12215 719665013b69b87d293241437d573b8a 142 Pfam PF02566 OsmC-like protein 44 138 5.6E-17 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS12215 719665013b69b87d293241437d573b8a 142 SUPERFAMILY SSF82784 1 140 2.09E-47 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS12215 719665013b69b87d293241437d573b8a 142 Gene3D G3DSA:3.30.300.20 48 142 8.7E-24 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS12215 719665013b69b87d293241437d573b8a 142 Gene3D G3DSA:2.20.25.10 3 46 5.9E-21 T 29-03-2018 Y880_RS12215 719665013b69b87d293241437d573b8a 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 140 3.9E-57 T 29-03-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 Y880_RS09325 1ceeb6c227a280f690e78fe0c471a1f7 427 Pfam PF00266 Aminotransferase class-V 65 387 7.5E-31 T 29-03-2018 IPR000192 Aminotransferase class V domain Y880_RS09325 1ceeb6c227a280f690e78fe0c471a1f7 427 Gene3D G3DSA:3.40.640.10 68 331 5.2E-33 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS09325 1ceeb6c227a280f690e78fe0c471a1f7 427 Gene3D G3DSA:3.90.1150.10 332 426 4.5E-18 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS09325 1ceeb6c227a280f690e78fe0c471a1f7 427 SUPERFAMILY SSF53383 40 423 1.65E-67 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS09325 1ceeb6c227a280f690e78fe0c471a1f7 427 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 255 275 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Y880_RS03075 0ada8685109b82993838eb7c79ea69ef 144 Gene3D G3DSA:1.20.1600.10 1 142 1.6E-9 T 29-03-2018 Y880_RS03075 0ada8685109b82993838eb7c79ea69ef 144 Pfam PF13437 HlyD family secretion protein 6 124 5.1E-14 T 29-03-2018 Y880_RS03075 0ada8685109b82993838eb7c79ea69ef 144 SUPERFAMILY SSF111369 1 57 3.66E-6 T 29-03-2018 Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 SUPERFAMILY SSF46785 18 84 6.81E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 SMART SM00345 22 80 4.8E-7 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 Gene3D G3DSA:1.10.10.10 1 81 9.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 SMART SM00895 90 220 5.8E-12 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 Gene3D G3DSA:1.20.120.530 82 235 1.2E-23 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 SUPERFAMILY SSF48008 101 227 6.8E-19 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 77 2.1E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y880_RS19200 443f9e78f7187e816fb1e86599a15ba5 242 Pfam PF07729 FCD domain 101 219 1.8E-18 T 29-03-2018 IPR011711 GntR, C-terminal Y880_RS14945 ba849f5e652a205dee40859117b37784 221 SUPERFAMILY SSF55729 77 216 3.77E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS14945 ba849f5e652a205dee40859117b37784 221 Pfam PF00583 Acetyltransferase (GNAT) family 109 209 6.1E-17 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS14945 ba849f5e652a205dee40859117b37784 221 Gene3D G3DSA:3.40.630.30 37 217 1.1E-24 T 29-03-2018 Y880_RS15240 064c73e8df719c77f4a3bf1db3af6581 114 Gene3D G3DSA:2.60.120.10 6 114 8.1E-13 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS15240 064c73e8df719c77f4a3bf1db3af6581 114 SUPERFAMILY SSF51182 19 112 6.53E-17 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS15240 064c73e8df719c77f4a3bf1db3af6581 114 Pfam PF05899 Protein of unknown function (DUF861) 37 109 6.9E-29 T 29-03-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y880_RS18775 b2fa754087168fbd05251386f1e2fb70 276 Pfam PF05114 Protein of unknown function (DUF692) 8 268 2.9E-98 T 29-03-2018 IPR007801 Uncharacterised protein family UPF0276 Y880_RS18775 b2fa754087168fbd05251386f1e2fb70 276 Gene3D G3DSA:3.20.20.150 4 275 1.2E-78 T 29-03-2018 Y880_RS18775 b2fa754087168fbd05251386f1e2fb70 276 Hamap MF_00697 UPF0276 protein . 8 276 45.372 T 29-03-2018 IPR007801 Uncharacterised protein family UPF0276 Y880_RS18775 b2fa754087168fbd05251386f1e2fb70 276 SUPERFAMILY SSF51658 28 206 6.33E-13 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS09410 34c910016801ae359358637fc4f4c359 72 SMART SM00923 3 53 6.0E-27 T 29-03-2018 IPR005153 MbtH-like protein Y880_RS09410 34c910016801ae359358637fc4f4c359 72 Pfam PF03621 MbtH-like protein 1 53 6.9E-25 T 29-03-2018 IPR005153 MbtH-like protein Y880_RS09410 34c910016801ae359358637fc4f4c359 72 SUPERFAMILY SSF160582 1 69 2.48E-30 T 29-03-2018 Y880_RS09410 34c910016801ae359358637fc4f4c359 72 Gene3D G3DSA:3.90.820.10 2 68 1.3E-35 T 29-03-2018 Y880_RS04950 c3d38432c869f0bcae47c84e815af0c5 122 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 120 3.3E-34 T 29-03-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Y880_RS04950 c3d38432c869f0bcae47c84e815af0c5 122 Gene3D G3DSA:1.20.1300.10 1 122 7.9E-19 T 29-03-2018 Y880_RS04950 c3d38432c869f0bcae47c84e815af0c5 122 SUPERFAMILY SSF81343 4 122 1.33E-27 T 29-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04950 c3d38432c869f0bcae47c84e815af0c5 122 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 113 9.1E-7 T 29-03-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y880_RS04950 c3d38432c869f0bcae47c84e815af0c5 122 PIRSF PIRSF000169 1 122 5.6E-44 T 29-03-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Y880_RS18535 59c8a9c9329fb3d594594fbbf2bd71c6 156 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 50 132 4.9E-5 T 29-03-2018 Y880_RS01070 b51740608c3175659e87b24df3f67bb0 57 TIGRFAM TIGR03510 XapX: XapX domain 2 48 6.0E-21 T 29-03-2018 IPR020017 XapX domain Y880_RS01070 b51740608c3175659e87b24df3f67bb0 57 Pfam PF07235 Protein of unknown function (DUF1427) 2 53 1.6E-22 T 29-03-2018 IPR009872 Protein of unknown function DUF1427 Y880_RS27960 a4e07617cdc6bc561d7bf5ec7fa9e99f 365 Gene3D G3DSA:3.90.1150.10 270 365 1.3E-15 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS27960 a4e07617cdc6bc561d7bf5ec7fa9e99f 365 Gene3D G3DSA:3.40.640.10 28 269 3.5E-38 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS27960 a4e07617cdc6bc561d7bf5ec7fa9e99f 365 SUPERFAMILY SSF53383 9 364 3.17E-83 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS27960 a4e07617cdc6bc561d7bf5ec7fa9e99f 365 Pfam PF00155 Aminotransferase class I and II 32 284 3.5E-17 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS20595 467eb9a008ecb929752a91e7a468a0a5 179 Pfam PF08282 haloacid dehalogenase-like hydrolase 92 153 1.7E-6 T 29-03-2018 IPR023214 HAD-like domain Y880_RS20595 467eb9a008ecb929752a91e7a468a0a5 179 Gene3D G3DSA:3.40.50.1000 6 179 8.5E-29 T 29-03-2018 IPR023214 HAD-like domain Y880_RS20595 467eb9a008ecb929752a91e7a468a0a5 179 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 17 169 7.7E-51 T 29-03-2018 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y880_RS20595 467eb9a008ecb929752a91e7a468a0a5 179 SUPERFAMILY SSF56784 13 172 1.94E-42 T 29-03-2018 IPR023214 HAD-like domain Y880_RS20595 467eb9a008ecb929752a91e7a468a0a5 179 PIRSF PIRSF006118 4 179 1.8E-68 T 29-03-2018 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y880_RS10840 7482c43e70e7131d324798b4ccfb4705 413 SUPERFAMILY SSF53474 2 230 1.73E-41 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS10840 7482c43e70e7131d324798b4ccfb4705 413 Pfam PF12680 SnoaL-like domain 249 357 8.0E-7 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS10840 7482c43e70e7131d324798b4ccfb4705 413 SUPERFAMILY SSF54427 238 380 2.02E-23 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS10840 7482c43e70e7131d324798b4ccfb4705 413 Gene3D G3DSA:3.10.450.50 237 378 3.2E-21 T 29-03-2018 Y880_RS10840 7482c43e70e7131d324798b4ccfb4705 413 Gene3D G3DSA:3.40.50.1820 2 235 1.8E-23 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS10840 7482c43e70e7131d324798b4ccfb4705 413 Pfam PF01738 Dienelactone hydrolase family 16 230 1.3E-46 T 29-03-2018 IPR002925 Dienelactone hydrolase GO:0016787 Y880_RS02810 6b882177a8cd5b9b3fcefaa17e4a7c4f 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 78 8.2E-17 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS02810 6b882177a8cd5b9b3fcefaa17e4a7c4f 209 SUPERFAMILY SSF47616 81 199 1.5E-32 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS02810 6b882177a8cd5b9b3fcefaa17e4a7c4f 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 194 9.1E-12 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal Y880_RS02810 6b882177a8cd5b9b3fcefaa17e4a7c4f 209 SUPERFAMILY SSF52833 3 84 4.84E-24 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS02810 6b882177a8cd5b9b3fcefaa17e4a7c4f 209 Gene3D G3DSA:3.40.30.10 1 98 1.2E-31 T 29-03-2018 Y880_RS02810 6b882177a8cd5b9b3fcefaa17e4a7c4f 209 Gene3D G3DSA:1.20.1050.10 99 206 3.3E-29 T 29-03-2018 Y880_RS01040 82a67d8dedc755dc552c53a719d73350 312 Pfam PF00581 Rhodanese-like domain 115 210 5.5E-7 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS01040 82a67d8dedc755dc552c53a719d73350 312 Gene3D G3DSA:3.40.250.10 107 218 1.8E-25 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS01040 82a67d8dedc755dc552c53a719d73350 312 Hamap MF_00469 UPF0176 protein YceA [yceA]. 2 254 46.668 T 29-03-2018 IPR020936 Uncharacterised protein family UPF0176 Y880_RS01040 82a67d8dedc755dc552c53a719d73350 312 SUPERFAMILY SSF52821 90 225 3.98E-29 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS01040 82a67d8dedc755dc552c53a719d73350 312 SMART SM00450 113 214 7.0E-16 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 Gene3D G3DSA:3.40.190.10 187 268 4.1E-5 T 29-03-2018 Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 Pfam PF03466 LysR substrate binding domain 96 294 4.9E-34 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 Gene3D G3DSA:3.40.190.10 94 186 1.0E-18 T 29-03-2018 Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 Gene3D G3DSA:1.10.10.10 3 90 3.8E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 SUPERFAMILY SSF46785 8 93 1.31E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 SUPERFAMILY SSF53850 98 295 3.15E-31 T 29-03-2018 Y880_RS02605 148258c1f5c870125fac64ae87a91714 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 3.3E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS14280 0f88ecff0eb904d94fb369bf5dd47adf 269 SUPERFAMILY SSF53649 2 255 6.73E-50 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS14280 0f88ecff0eb904d94fb369bf5dd47adf 269 Gene3D G3DSA:3.40.720.10 2 261 8.7E-33 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS14280 0f88ecff0eb904d94fb369bf5dd47adf 269 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 5 210 7.9E-16 T 29-03-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 Y880_RS23945 bf18f1586ef85d7dfdd7db67f7e8bb5e 861 Pfam PF00535 Glycosyl transferase family 2 249 431 2.2E-23 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS23945 bf18f1586ef85d7dfdd7db67f7e8bb5e 861 SUPERFAMILY SSF53448 247 533 6.75E-29 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS23945 bf18f1586ef85d7dfdd7db67f7e8bb5e 861 Gene3D G3DSA:3.90.550.10 219 505 1.6E-21 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS23945 bf18f1586ef85d7dfdd7db67f7e8bb5e 861 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 72 748 52.252 T 29-03-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 Y880_RS02770 59bb7f814d400f2394dec1701116a9a7 200 TIGRFAM TIGR03304 OMP85_target: outer membrane insertion C-terminal signal 191 200 0.22 T 29-03-2018 IPR017690 Outer membrane insertion C-terminal signal, omp85 target Y880_RS02770 59bb7f814d400f2394dec1701116a9a7 200 Gene3D G3DSA:2.40.160.20 20 200 4.4E-11 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS02770 59bb7f814d400f2394dec1701116a9a7 200 SUPERFAMILY SSF56925 45 200 1.86E-18 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS02770 59bb7f814d400f2394dec1701116a9a7 200 Pfam PF13505 Outer membrane protein beta-barrel domain 9 200 1.4E-9 T 29-03-2018 IPR027385 Outer membrane protein beta-barrel Y880_RS03525 fd7f9e16cdcd73aac3e4027cf4575089 135 Pfam PF13474 SnoaL-like domain 14 113 9.2E-10 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS03525 fd7f9e16cdcd73aac3e4027cf4575089 135 SUPERFAMILY SSF54427 5 122 1.15E-27 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS03525 fd7f9e16cdcd73aac3e4027cf4575089 135 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 4 116 1.0E-9 T 29-03-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 Y880_RS03525 fd7f9e16cdcd73aac3e4027cf4575089 135 Gene3D G3DSA:3.10.450.50 2 135 4.6E-22 T 29-03-2018 Y880_RS03035 a5c6f207195ae0b077c88e4bc1c269b6 65 Pfam PF07869 Protein of unknown function (DUF1656) 7 59 2.7E-11 T 29-03-2018 IPR012451 Protein of unknown function DUF1656 Y880_RS15020 f19721d49195c8e0dcffe150d9f7a26d 334 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 2 289 1.5E-99 T 29-03-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 Y880_RS15020 f19721d49195c8e0dcffe150d9f7a26d 334 SUPERFAMILY SSF53850 49 243 3.93E-36 T 29-03-2018 Y880_RS15020 f19721d49195c8e0dcffe150d9f7a26d 334 Gene3D G3DSA:3.40.190.10 30 128 5.9E-7 T 29-03-2018 Y880_RS15020 f19721d49195c8e0dcffe150d9f7a26d 334 Gene3D G3DSA:3.40.190.10 129 274 1.2E-27 T 29-03-2018 Y880_RS15020 f19721d49195c8e0dcffe150d9f7a26d 334 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 7 252 6.7E-82 T 29-03-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 Y880_RS15020 f19721d49195c8e0dcffe150d9f7a26d 334 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 32 277 2.3E-70 T 29-03-2018 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PIRSF PIRSF006060 320 414 4.8 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PIRSF PIRSF006060 3 310 6.5E-11 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 17 398 7.0E-150 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 Pfam PF03222 Tryptophan/tyrosine permease family 12 405 4.6E-146 T 29-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 235 254 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 20 43 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 92 112 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 330 348 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 296 315 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 158 178 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 196 218 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 47 66 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS25830 daca5a7561d15e0592702181c46300f2 417 PRINTS PR00166 Aromatic amino acid permease signature 351 370 1.0E-98 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y880_RS19250 95f132db5e9c514826583ad488556eb6 276 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 255 2.6E-50 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS19250 95f132db5e9c514826583ad488556eb6 276 SMART SM00062 34 257 1.9E-55 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS19250 95f132db5e9c514826583ad488556eb6 276 Gene3D G3DSA:3.40.190.10 177 260 2.6E-4 T 29-03-2018 Y880_RS19250 95f132db5e9c514826583ad488556eb6 276 SUPERFAMILY SSF53850 2 256 9.06E-59 T 29-03-2018 Y880_RS19250 95f132db5e9c514826583ad488556eb6 276 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 Y880_RS19250 95f132db5e9c514826583ad488556eb6 276 Gene3D G3DSA:3.40.190.10 23 176 1.9E-38 T 29-03-2018 Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 Pfam PF01037 Lrp/AsnC ligand binding domain 68 134 3.7E-12 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 3.2E-16 T 29-03-2018 Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 SUPERFAMILY SSF54909 63 136 8.04E-14 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 Gene3D G3DSA:3.30.70.920 51 141 5.7E-18 T 29-03-2018 Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 Gene3D G3DSA:1.10.10.10 1 50 5.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 SUPERFAMILY SSF46785 1 60 3.38E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 SMART SM00344 1 107 1.7E-32 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.0E-13 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.0E-13 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS22425 7ced6e8c1996517e633dd182cd8b56a5 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.0E-13 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y880_RS08640 45153c0eda924a8fecc19fdc8c70c200 260 SUPERFAMILY SSF51658 5 251 1.87E-68 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS08640 45153c0eda924a8fecc19fdc8c70c200 260 Pfam PF01261 Xylose isomerase-like TIM barrel 111 198 5.5E-7 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS08640 45153c0eda924a8fecc19fdc8c70c200 260 Gene3D G3DSA:3.20.20.150 1 260 9.4E-39 T 29-03-2018 Y880_RS03980 d7a6fefc5236e935404620814558b3b2 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 4.2E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03980 d7a6fefc5236e935404620814558b3b2 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 2.1E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03980 d7a6fefc5236e935404620814558b3b2 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 2.1E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS03980 d7a6fefc5236e935404620814558b3b2 210 Gene3D G3DSA:1.10.357.10 21 210 2.4E-32 T 29-03-2018 Y880_RS03980 d7a6fefc5236e935404620814558b3b2 210 SUPERFAMILY SSF46689 16 90 9.71E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS14360 a2d8731874e3ffd4285f0dcc50ac1ecf 306 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 302 44.932 T 29-03-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 Y880_RS14360 a2d8731874e3ffd4285f0dcc50ac1ecf 306 Pfam PF04381 Putative exonuclease, RdgC 1 300 2.1E-115 T 29-03-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 Y880_RS10160 9738b28e97a678a5fc5d0acbe4d9d07c 230 Pfam PF02308 MgtC family 9 129 1.0E-32 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS10160 9738b28e97a678a5fc5d0acbe4d9d07c 230 PRINTS PR01837 MgtC/SapB protein signature 84 108 3.9E-41 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS10160 9738b28e97a678a5fc5d0acbe4d9d07c 230 PRINTS PR01837 MgtC/SapB protein signature 12 31 3.9E-41 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS10160 9738b28e97a678a5fc5d0acbe4d9d07c 230 PRINTS PR01837 MgtC/SapB protein signature 57 79 3.9E-41 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS10160 9738b28e97a678a5fc5d0acbe4d9d07c 230 PRINTS PR01837 MgtC/SapB protein signature 31 49 3.9E-41 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS01835 e371033d2718757ada213cf9c5557dfc 252 SMART SM00849 11 162 4.2E-15 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS01835 e371033d2718757ada213cf9c5557dfc 252 Gene3D G3DSA:3.60.15.10 7 237 1.9E-37 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS01835 e371033d2718757ada213cf9c5557dfc 252 Pfam PF12706 Beta-lactamase superfamily domain 22 204 3.9E-23 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS01835 e371033d2718757ada213cf9c5557dfc 252 SUPERFAMILY SSF56281 1 222 1.04E-42 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS00345 9b658fff369af7fa1fb759b62353cdd1 502 Gene3D G3DSA:3.40.309.10 264 459 6.2E-58 T 29-03-2018 Y880_RS00345 9b658fff369af7fa1fb759b62353cdd1 502 Pfam PF00171 Aldehyde dehydrogenase family 13 477 4.1E-138 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS00345 9b658fff369af7fa1fb759b62353cdd1 502 SUPERFAMILY SSF53720 4 483 9.82E-147 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS00345 9b658fff369af7fa1fb759b62353cdd1 502 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 7 481 5.8E-236 T 29-03-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 Y880_RS00345 9b658fff369af7fa1fb759b62353cdd1 502 Gene3D G3DSA:3.40.605.10 1 263 7.9E-87 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS24970 c2185f650df0ed05fb5b4c6f63b41b38 237 PIRSF PIRSF032817 1 237 3.1E-111 T 29-03-2018 IPR017008 Uncharacterised conserved protein UCP032817 Y880_RS13540 2a0ab37dbe5b8d875b2da1bcbe7a1832 502 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 17 499 9.6E-217 T 29-03-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 Y880_RS13540 2a0ab37dbe5b8d875b2da1bcbe7a1832 502 Gene3D G3DSA:3.30.450.90 96 227 9.3E-49 T 29-03-2018 Y880_RS13540 2a0ab37dbe5b8d875b2da1bcbe7a1832 502 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 322 336 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS13540 2a0ab37dbe5b8d875b2da1bcbe7a1832 502 SUPERFAMILY SSF52540 112 499 9.46E-106 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13540 2a0ab37dbe5b8d875b2da1bcbe7a1832 502 Gene3D G3DSA:3.40.50.300 228 502 6.7E-62 T 29-03-2018 Y880_RS13540 2a0ab37dbe5b8d875b2da1bcbe7a1832 502 SUPERFAMILY SSF160246 17 81 2.59E-14 T 29-03-2018 Y880_RS13540 2a0ab37dbe5b8d875b2da1bcbe7a1832 502 Pfam PF00437 Type II/IV secretion system protein 129 394 1.3E-92 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS02240 7b5b0bad8c7ebd6e785ba670aafaacc7 433 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 432 5.2E-114 T 29-03-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 Y880_RS02240 7b5b0bad8c7ebd6e785ba670aafaacc7 433 Pfam PF00700 Bacterial flagellin C-terminal helical region 352 432 4.5E-7 T 29-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y880_RS02240 7b5b0bad8c7ebd6e785ba670aafaacc7 433 SUPERFAMILY SSF64518 1 433 5.49E-82 T 29-03-2018 Y880_RS02240 7b5b0bad8c7ebd6e785ba670aafaacc7 433 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 1.9E-21 T 29-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y880_RS02240 7b5b0bad8c7ebd6e785ba670aafaacc7 433 Gene3D G3DSA:1.20.1330.10 38 407 1.0E-32 T 29-03-2018 Y880_RS20425 322bbd5f8e302b1e541387beb30785fd 125 Hamap MF_00048 UPF0102 protein YraN [yraN]. 7 118 23.829 T 29-03-2018 IPR003509 Uncharacterised protein family UPF0102 Y880_RS20425 322bbd5f8e302b1e541387beb30785fd 125 Pfam PF02021 Uncharacterised protein family UPF0102 14 105 7.3E-26 T 29-03-2018 IPR003509 Uncharacterised protein family UPF0102 Y880_RS20425 322bbd5f8e302b1e541387beb30785fd 125 SUPERFAMILY SSF52980 8 118 1.52E-21 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y880_RS20425 322bbd5f8e302b1e541387beb30785fd 125 Gene3D G3DSA:3.40.1350.10 13 125 2.3E-37 T 29-03-2018 Y880_RS20425 322bbd5f8e302b1e541387beb30785fd 125 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 7 124 3.0E-31 T 29-03-2018 IPR003509 Uncharacterised protein family UPF0102 Y880_RS06225 abe099a3ec88295b27bb93624f0cbb9c 451 Pfam PF13520 Amino acid permease 13 410 5.5E-55 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS06225 abe099a3ec88295b27bb93624f0cbb9c 451 PIRSF PIRSF006060 2 450 5.9E-73 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS25120 de607ecd043cf1e84278d32a59bf1038 182 Gene3D G3DSA:1.10.260.40 1 72 1.4E-15 T 29-03-2018 Y880_RS25120 de607ecd043cf1e84278d32a59bf1038 182 Pfam PF07883 Cupin domain 108 175 1.2E-19 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS25120 de607ecd043cf1e84278d32a59bf1038 182 SMART SM00530 6 61 4.3E-14 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS25120 de607ecd043cf1e84278d32a59bf1038 182 Gene3D G3DSA:2.60.120.10 73 182 1.3E-18 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS25120 de607ecd043cf1e84278d32a59bf1038 182 Pfam PF01381 Helix-turn-helix 8 59 1.4E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS25120 de607ecd043cf1e84278d32a59bf1038 182 SUPERFAMILY SSF47413 3 67 1.27E-15 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS25120 de607ecd043cf1e84278d32a59bf1038 182 SUPERFAMILY SSF51182 46 182 4.01E-27 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS26955 b82799cf868a597956b7893df6e9ec44 352 Gene3D G3DSA:3.20.20.70 34 309 1.2E-27 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS26955 b82799cf868a597956b7893df6e9ec44 352 SUPERFAMILY SSF102114 48 261 2.09E-12 T 29-03-2018 Y880_RS26955 b82799cf868a597956b7893df6e9ec44 352 Pfam PF04055 Radical SAM superfamily 67 245 2.9E-13 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS26955 b82799cf868a597956b7893df6e9ec44 352 SMART SM00729 63 288 9.4E-4 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS27520 9d61b2673483b9b517d6fe068afb1581 121 Pfam PF00072 Response regulator receiver domain 5 115 1.9E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS27520 9d61b2673483b9b517d6fe068afb1581 121 SMART SM00448 3 116 1.6E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS27520 9d61b2673483b9b517d6fe068afb1581 121 SUPERFAMILY SSF52172 3 120 4.27E-37 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS27520 9d61b2673483b9b517d6fe068afb1581 121 Gene3D G3DSA:3.40.50.2300 2 121 9.7E-37 T 29-03-2018 Y880_RS01715 88ae80ddb639be43cab2916bf23f0e47 134 Pfam PF03061 Thioesterase superfamily 20 105 8.2E-18 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS01715 88ae80ddb639be43cab2916bf23f0e47 134 SUPERFAMILY SSF54637 2 133 1.12E-29 T 29-03-2018 IPR029069 HotDog domain Y880_RS01715 88ae80ddb639be43cab2916bf23f0e47 134 Gene3D G3DSA:3.10.129.10 1 134 2.9E-20 T 29-03-2018 Y880_RS21430 90370a0a70a05a476a4a1f551f435c3d 332 PIRSF PIRSF006470 1 331 2.9E-117 T 29-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Y880_RS21430 90370a0a70a05a476a4a1f551f435c3d 332 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 32 277 3.3E-65 T 29-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Y880_RS21430 90370a0a70a05a476a4a1f551f435c3d 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 314 1.3E-95 T 29-03-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Y880_RS19515 d099d5dc95938583016e3358d4355599 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.2E-39 T 29-03-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19515 d099d5dc95938583016e3358d4355599 179 Pfam PF00281 Ribosomal protein L5 24 80 7.7E-29 T 29-03-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19515 d099d5dc95938583016e3358d4355599 179 PIRSF PIRSF002161 1 179 1.6E-64 T 29-03-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19515 d099d5dc95938583016e3358d4355599 179 SUPERFAMILY SSF55282 3 179 1.22E-77 T 29-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19515 d099d5dc95938583016e3358d4355599 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.121 T 29-03-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19515 d099d5dc95938583016e3358d4355599 179 Gene3D G3DSA:3.30.1440.10 1 179 1.0E-77 T 29-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19515 d099d5dc95938583016e3358d4355599 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 29-03-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS18565 6e371f12f10eaa8c8b5b55c45e38016a 421 Pfam PF02687 FtsX-like permease family 319 412 1.3E-13 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y880_RS18565 6e371f12f10eaa8c8b5b55c45e38016a 421 Pfam PF12704 MacB-like periplasmic core domain 19 261 1.1E-12 T 29-03-2018 IPR025857 MacB-like periplasmic core domain Y880_RS24835 b9f65335284a2d0c5a03bf18f76b5aac 157 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 155 7.5E-17 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS24835 b9f65335284a2d0c5a03bf18f76b5aac 157 Pfam PF03061 Thioesterase superfamily 58 148 1.3E-18 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS24835 b9f65335284a2d0c5a03bf18f76b5aac 157 Gene3D G3DSA:3.10.129.10 10 156 3.4E-30 T 29-03-2018 Y880_RS24835 b9f65335284a2d0c5a03bf18f76b5aac 157 SUPERFAMILY SSF54637 7 155 1.87E-29 T 29-03-2018 IPR029069 HotDog domain Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Gene3D G3DSA:3.40.190.10 184 269 1.6E-17 T 29-03-2018 Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Gene3D G3DSA:3.40.190.10 93 183 5.4E-15 T 29-03-2018 Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Gene3D G3DSA:1.10.10.10 1 86 4.6E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 SUPERFAMILY SSF46785 4 84 1.57E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.5E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.5E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.5E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.5E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 SUPERFAMILY SSF53850 90 296 2.33E-39 T 29-03-2018 Y880_RS24540 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Pfam PF03466 LysR substrate binding domain 94 296 3.7E-28 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS11250 fd8f5b08768821dbfb7d329381c1e7df 147 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 8 117 6.0E-7 T 29-03-2018 IPR020143 Uncharacterised protein family, RP436 Y880_RS11250 fd8f5b08768821dbfb7d329381c1e7df 147 Pfam PF09335 SNARE associated Golgi protein 30 140 1.8E-13 T 29-03-2018 IPR032816 SNARE associated Golgi protein Y880_RS11475 03bcf9bfb8e5a210f41fa149ca9c329f 531 SUPERFAMILY SSF58104 230 530 4.71E-70 T 29-03-2018 Y880_RS11475 03bcf9bfb8e5a210f41fa149ca9c329f 531 SMART SM00283 266 530 1.1E-70 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS11475 03bcf9bfb8e5a210f41fa149ca9c329f 531 Gene3D G3DSA:1.10.287.950 55 297 0.0031 T 29-03-2018 Y880_RS11475 03bcf9bfb8e5a210f41fa149ca9c329f 531 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 497 1.0E-43 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS11475 03bcf9bfb8e5a210f41fa149ca9c329f 531 Gene3D G3DSA:1.10.287.950 298 502 1.2E-50 T 29-03-2018 Y880_RS11475 03bcf9bfb8e5a210f41fa149ca9c329f 531 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 52 142 1.6E-15 T 29-03-2018 IPR029095 NarX-like, N-terminal Y880_RS21055 fa6ae1f2ea2bd43fe64f4296d04f4132 341 Gene3D G3DSA:1.25.20.10 26 168 1.4E-10 T 29-03-2018 Y880_RS21055 fa6ae1f2ea2bd43fe64f4296d04f4132 341 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 241 40.593 T 29-03-2018 IPR017689 Outer membrane protein assembly factor BamD Y880_RS21055 fa6ae1f2ea2bd43fe64f4296d04f4132 341 Pfam PF13525 Outer membrane lipoprotein 29 233 2.4E-80 T 29-03-2018 Y880_RS21055 fa6ae1f2ea2bd43fe64f4296d04f4132 341 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 245 2.8E-86 T 29-03-2018 IPR017689 Outer membrane protein assembly factor BamD Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 Pfam PF06574 FAD synthetase 15 167 1.8E-54 T 29-03-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 Pfam PF01687 Riboflavin kinase 184 305 4.2E-36 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 Gene3D G3DSA:2.40.30.30 180 310 8.2E-39 T 29-03-2018 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 305 3.6E-97 T 29-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 SMART SM00904 183 307 8.6E-60 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 PIRSF PIRSF004491 1 310 1.4E-103 T 29-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 SUPERFAMILY SSF82114 174 306 1.46E-43 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 SUPERFAMILY SSF52374 17 178 1.69E-31 T 29-03-2018 Y880_RS21140 476d3d5747862ae9d7604fb177b95dc6 312 Gene3D G3DSA:3.40.50.620 1 179 6.5E-49 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS20235 2ebda5760d51f379d75082ec055790e0 244 Pfam PF10615 Protein of unknown function (DUF2470) 162 230 2.0E-13 T 29-03-2018 IPR019595 Domain of unknown function DUF2470 Y880_RS20235 2ebda5760d51f379d75082ec055790e0 244 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 4 146 3.0E-14 T 29-03-2018 Y880_RS20235 2ebda5760d51f379d75082ec055790e0 244 Gene3D G3DSA:3.20.180.10 165 240 1.3E-23 T 29-03-2018 IPR019595 Domain of unknown function DUF2470 Y880_RS20235 2ebda5760d51f379d75082ec055790e0 244 SUPERFAMILY SSF50475 3 236 8.23E-57 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS20235 2ebda5760d51f379d75082ec055790e0 244 Gene3D G3DSA:2.30.110.10 2 164 8.2E-38 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 Y880_RS01760 84cdd045a200854149fb2f9cf0bfde35 283 SUPERFAMILY SSF53901 23 156 2.36E-11 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS01760 84cdd045a200854149fb2f9cf0bfde35 283 Gene3D G3DSA:3.40.47.10 18 194 1.4E-8 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS19275 b28aa0e3a7af7c87517f0588d58b7ec4 288 SUPERFAMILY SSF56281 3 270 9.96E-41 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS19275 b28aa0e3a7af7c87517f0588d58b7ec4 288 SMART SM00849 43 257 1.8E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS19275 b28aa0e3a7af7c87517f0588d58b7ec4 288 Pfam PF00753 Metallo-beta-lactamase superfamily 42 257 5.9E-27 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS19275 b28aa0e3a7af7c87517f0588d58b7ec4 288 Gene3D G3DSA:3.60.15.10 2 269 1.9E-40 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS13340 9ec062e78a2e6671e87151f19ff30a9b 1620 SUPERFAMILY SSF53223 761 962 5.18E-27 T 29-03-2018 Y880_RS13340 9ec062e78a2e6671e87151f19ff30a9b 1620 Gene3D G3DSA:3.40.50.720 944 1285 2.2E-47 T 29-03-2018 Y880_RS13340 9ec062e78a2e6671e87151f19ff30a9b 1620 PIRSF PIRSF036761 2 1614 0.0 T 29-03-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 Y880_RS13340 9ec062e78a2e6671e87151f19ff30a9b 1620 SUPERFAMILY SSF51735 951 1053 1.84E-27 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13340 9ec062e78a2e6671e87151f19ff30a9b 1620 SUPERFAMILY SSF51735 1089 1245 1.84E-27 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS13340 9ec062e78a2e6671e87151f19ff30a9b 1620 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 77 1607 0.0 T 29-03-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 2.7E-109 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 427 2.1E-201 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS08730 561d6a91c2a3370927871545bc0ef3e4 427 Pfam PF02040 Arsenical pump membrane protein 4 422 7.0E-150 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y880_RS20985 0b0f22b4457e926da839153699d001ff 141 Gene3D G3DSA:3.40.630.30 1 141 1.5E-23 T 29-03-2018 Y880_RS20985 0b0f22b4457e926da839153699d001ff 141 SUPERFAMILY SSF55729 1 127 8.14E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS20985 0b0f22b4457e926da839153699d001ff 141 Pfam PF00583 Acetyltransferase (GNAT) family 23 120 1.6E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS02065 77462f223b16f4ff0a085f40d6a4923d 154 Pfam PF05433 Glycine zipper 2TM domain 61 100 2.0E-7 T 29-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 Y880_RS02065 77462f223b16f4ff0a085f40d6a4923d 154 Gene3D G3DSA:3.40.190.10 1 151 7.1E-4 T 29-03-2018 Y880_RS12315 bacbbeca6f4aefa0046290419110b7bc 162 Gene3D G3DSA:3.90.420.10 27 162 1.3E-22 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS12315 bacbbeca6f4aefa0046290419110b7bc 162 SUPERFAMILY SSF56524 40 161 3.27E-18 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS06850 c779efd34ce5dd9d37904fdf6486f9e3 259 Gene3D G3DSA:3.40.1800.10 3 103 2.5E-7 T 29-03-2018 Y880_RS06850 c779efd34ce5dd9d37904fdf6486f9e3 259 Pfam PF13391 HNH endonuclease 38 91 6.0E-8 T 29-03-2018 IPR003615 HNH nuclease Y880_RS14810 fcd5a30acc16009f1debfe23c6d03ff0 116 Gene3D G3DSA:1.20.120.160 1 110 4.2E-22 T 29-03-2018 Y880_RS14810 fcd5a30acc16009f1debfe23c6d03ff0 116 Pfam PF01627 Hpt domain 25 100 1.3E-14 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS14810 fcd5a30acc16009f1debfe23c6d03ff0 116 SUPERFAMILY SSF47226 3 113 8.24E-26 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Y880_RS07490 71414aef29de715f1d974255b576315d 351 Gene3D G3DSA:2.40.128.130 229 349 3.1E-6 T 29-03-2018 Y880_RS07490 71414aef29de715f1d974255b576315d 351 Pfam PF05275 Copper resistance protein B precursor (CopB) 147 351 8.7E-93 T 29-03-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 Y880_RS20450 93bc7cc205aae3c855b3ea9a148904c0 260 SUPERFAMILY SSF46626 16 159 1.5E-45 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS20450 93bc7cc205aae3c855b3ea9a148904c0 260 SUPERFAMILY SSF46626 199 223 1.5E-45 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS20450 93bc7cc205aae3c855b3ea9a148904c0 260 Gene3D G3DSA:1.20.5.100 229 259 3.7E-14 T 29-03-2018 Y880_RS20450 93bc7cc205aae3c855b3ea9a148904c0 260 Gene3D G3DSA:1.10.760.10 29 225 4.2E-50 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS20450 93bc7cc205aae3c855b3ea9a148904c0 260 Pfam PF02167 Cytochrome C1 family 91 259 7.5E-10 T 29-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 Y880_RS05510 e5b288c1104917642aea98a62d9d23cd 700 PIRSF PIRSF005091 16 695 1.8E-133 T 29-03-2018 IPR012160 Lipoteichoic acid synthase-like Y880_RS05510 e5b288c1104917642aea98a62d9d23cd 700 SUPERFAMILY SSF53649 315 680 6.4E-64 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS05510 e5b288c1104917642aea98a62d9d23cd 700 Pfam PF00884 Sulfatase 315 594 2.1E-45 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS05510 e5b288c1104917642aea98a62d9d23cd 700 Gene3D G3DSA:3.40.720.10 305 599 8.5E-46 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS24365 62f0f5bf1da38dbc185c079b9512e6dd 406 Gene3D G3DSA:3.40.50.150 40 268 2.8E-6 T 29-03-2018 Y880_RS24365 62f0f5bf1da38dbc185c079b9512e6dd 406 Pfam PF13679 Methyltransferase domain 131 236 1.1E-12 T 29-03-2018 IPR025714 Methyltransferase domain Y880_RS24365 62f0f5bf1da38dbc185c079b9512e6dd 406 SUPERFAMILY SSF53335 124 191 2.69E-6 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 Gene3D G3DSA:3.40.640.10 521 772 1.5E-41 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 Gene3D G3DSA:3.90.1150.10 347 448 1.1E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 Gene3D G3DSA:3.90.1150.10 773 904 3.7E-48 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 12 956 26.215 T 29-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 Gene3D G3DSA:3.40.640.10 100 346 3.4E-32 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 Pfam PF02347 Glycine cleavage system P-protein 21 444 5.0E-181 T 29-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 Pfam PF02347 Glycine cleavage system P-protein 482 743 5.2E-10 T 29-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 SUPERFAMILY SSF53383 21 446 3.88E-99 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 21 950 0.0 T 29-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 SUPERFAMILY SSF53383 929 952 2.16E-107 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS09585 34daf2d05dd40d27565bb4228d881dcf 959 SUPERFAMILY SSF53383 466 887 2.16E-107 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS15675 477d7738991704f52ead06acaee5dc33 258 Gene3D G3DSA:1.10.3720.10 3 249 7.5E-23 T 29-03-2018 Y880_RS15675 477d7738991704f52ead06acaee5dc33 258 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 246 4.0E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS15675 477d7738991704f52ead06acaee5dc33 258 SUPERFAMILY SSF161098 54 234 4.19E-28 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS27235 29b659316d48f0a07f31a849e25df2ed 93 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 87 4.7E-8 T 29-03-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Y880_RS03185 f388210e08b6986bfadf13c9ccd1efe7 214 SUPERFAMILY SSF161098 14 198 8.24E-38 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS03185 f388210e08b6986bfadf13c9ccd1efe7 214 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 212 5.9E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS03185 f388210e08b6986bfadf13c9ccd1efe7 214 Gene3D G3DSA:1.10.3720.10 9 214 5.4E-35 T 29-03-2018 Y880_RS03185 f388210e08b6986bfadf13c9ccd1efe7 214 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 107 1.6E-14 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 SUPERFAMILY SSF48592 406 521 4.28E-75 T 29-03-2018 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 SUPERFAMILY SSF48592 7 134 4.28E-75 T 29-03-2018 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 SUPERFAMILY SSF52029 184 376 2.62E-83 T 29-03-2018 IPR027409 GroEL-like apical domain Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 29-03-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 Gene3D G3DSA:1.10.560.10 374 516 3.8E-23 T 29-03-2018 IPR027413 GroEL-like equatorial domain Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 SUPERFAMILY SSF54849 137 203 3.43E-24 T 29-03-2018 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 Gene3D G3DSA:3.50.7.10 186 373 2.9E-98 T 29-03-2018 IPR027409 GroEL-like apical domain Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 7.0E-94 T 29-03-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.624 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 350 375 7.4E-75 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 398 419 7.4E-75 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 83 110 7.4E-75 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 27 53 7.4E-75 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 268 291 7.4E-75 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 2.5E-254 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y880_RS20220 87beb1e1996e1c4cd40de9f6725d007c 547 Gene3D G3DSA:1.10.560.10 1 185 1.6E-41 T 29-03-2018 IPR027413 GroEL-like equatorial domain Y880_RS19365 fac056b982f16914bb7a9dda88f5bac8 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 174 1.1E-11 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS19365 fac056b982f16914bb7a9dda88f5bac8 720 SUPERFAMILY SSF56935 43 720 5.7E-130 T 29-03-2018 Y880_RS19365 fac056b982f16914bb7a9dda88f5bac8 720 Gene3D G3DSA:2.170.130.10 40 182 6.1E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS19365 fac056b982f16914bb7a9dda88f5bac8 720 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 703 720 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS19365 fac056b982f16914bb7a9dda88f5bac8 720 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 720 7.1E-177 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS19365 fac056b982f16914bb7a9dda88f5bac8 720 Pfam PF00593 TonB dependent receptor 289 717 9.1E-53 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS19365 fac056b982f16914bb7a9dda88f5bac8 720 Gene3D G3DSA:2.40.170.20 183 720 5.2E-96 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 SMART SM00471 57 255 7.6E-10 T 29-03-2018 IPR003607 HD/PDEase domain Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 Pfam PF01966 HD domain 61 125 9.2E-9 T 29-03-2018 IPR006674 HD domain Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 Hamap MF_01213 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 1 440 52.737 T 29-03-2018 IPR023024 dNTP triphosphohydrolase, type 3 GO:0016793 Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 Gene3D G3DSA:1.10.3410.10 239 351 1.7E-19 T 29-03-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 24 436 4.7E-98 T 29-03-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 SUPERFAMILY SSF109604 21 187 2.93E-64 T 29-03-2018 Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 SUPERFAMILY SSF109604 224 434 2.93E-64 T 29-03-2018 Y880_RS13225 26e9713ec4adde923c798dd755da30f3 443 Gene3D G3DSA:1.10.3210.10 1 232 7.3E-65 T 29-03-2018 Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 SUPERFAMILY SSF52540 1 217 9.03E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 553 5.7E-157 T 29-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 PIRSF PIRSF003128 1 558 2.3E-160 T 29-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 SUPERFAMILY SSF52540 2 50 1.18E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 SUPERFAMILY SSF52540 284 511 1.18E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 Pfam PF02463 RecF/RecN/SMC N terminal domain 8 510 1.5E-15 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 Gene3D G3DSA:3.40.50.300 234 534 8.4E-21 T 29-03-2018 Y880_RS22315 3af99207c1547ec99a031acef254af2c 558 Gene3D G3DSA:3.40.50.300 1 229 5.0E-21 T 29-03-2018 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 342 3.1E-120 T 29-03-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.50.30.10 357 474 1.6E-35 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.30.470.20 193 356 8.4E-47 T 29-03-2018 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 6.2E-26 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 5 786 0.0 T 29-03-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 PIRSF PIRSF000854 1 791 0.0 T 29-03-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 SUPERFAMILY SSF51621 461 786 1.05E-99 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.20.20.60 477 789 6.9E-105 T 29-03-2018 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.30.1490.20 2 192 1.8E-54 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 481 780 1.4E-62 T 29-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 29-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 SUPERFAMILY SSF52009 347 464 5.36E-34 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 693 708 7.8E-6 T 29-03-2018 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 746 758 7.8E-6 T 29-03-2018 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 710 725 7.8E-6 T 29-03-2018 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 SUPERFAMILY SSF56059 3 384 1.77E-108 T 29-03-2018 Y880_RS05940 5f743bc959a0ec218f53b001fc9537aa 791 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 29-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 84 99 - T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 203 222 3.8E-47 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 400 420 3.8E-47 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 84 106 3.8E-47 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 294 312 3.8E-47 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 340 362 3.8E-47 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 175 193 3.8E-47 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 431 1.2E-142 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS08595 3182f74dc613b2ccba221d77f6780761 481 Pfam PF01235 Sodium:alanine symporter family 50 444 6.1E-146 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y880_RS23555 aca36800d4fdb262b77e40eab94366e6 298 Pfam PF07395 Mig-14 35 298 9.2E-144 T 29-03-2018 IPR009977 Mig-14 Y880_RS23555 aca36800d4fdb262b77e40eab94366e6 298 Gene3D G3DSA:3.40.630.30 132 296 5.1E-19 T 29-03-2018 Y880_RS23555 aca36800d4fdb262b77e40eab94366e6 298 SUPERFAMILY SSF55729 138 290 1.32E-17 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS23555 aca36800d4fdb262b77e40eab94366e6 298 PIRSF PIRSF029703 1 298 1.4E-134 T 29-03-2018 IPR009977 Mig-14 Y880_RS26990 31bc64561bdd68cf24b04c9cca45a259 226 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 5 139 2.5E-47 T 29-03-2018 IPR017748 Type VI secretion system-associated, BMAA0400 Y880_RS26990 31bc64561bdd68cf24b04c9cca45a259 226 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 5 139 1.3E-48 T 29-03-2018 IPR017748 Type VI secretion system-associated, BMAA0400 Y880_RS26990 31bc64561bdd68cf24b04c9cca45a259 226 PIRSF PIRSF029287 1 219 1.6E-98 T 29-03-2018 IPR017748 Type VI secretion system-associated, BMAA0400 Y880_RS26990 31bc64561bdd68cf24b04c9cca45a259 226 Gene3D G3DSA:3.40.1730.10 2 221 9.8E-74 T 29-03-2018 Y880_RS03325 d47595b891230a1c3d2043d33c6efbea 399 Pfam PF07690 Major Facilitator Superfamily 14 312 2.1E-28 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS03325 d47595b891230a1c3d2043d33c6efbea 399 Gene3D G3DSA:1.20.1250.20 201 395 8.4E-22 T 29-03-2018 Y880_RS03325 d47595b891230a1c3d2043d33c6efbea 399 Gene3D G3DSA:1.20.1250.20 1 200 1.1E-21 T 29-03-2018 Y880_RS03325 d47595b891230a1c3d2043d33c6efbea 399 SUPERFAMILY SSF103473 3 388 2.49E-55 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 SUPERFAMILY SSF53067 151 340 8.76E-48 T 29-03-2018 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 Gene3D G3DSA:3.30.420.40 8 163 1.1E-42 T 29-03-2018 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 50 68 1.8E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 134 153 1.8E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 70 93 1.8E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 302 328 1.8E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 189 209 1.8E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 Pfam PF06723 MreB/Mbl protein 11 337 3.6E-148 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 Gene3D G3DSA:3.30.420.40 249 319 9.7E-10 T 29-03-2018 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 Gene3D G3DSA:3.30.420.40 164 248 9.3E-26 T 29-03-2018 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 338 9.2E-161 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y880_RS20710 70fa0299c36d1ccf7815142bcbe5bdab 345 SUPERFAMILY SSF53067 9 150 3.02E-38 T 29-03-2018 Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 4.7E-30 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 4.7E-30 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 4.7E-30 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 225 245 4.7E-30 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 4.7E-30 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 4.7E-30 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 Gene3D G3DSA:3.40.50.720 51 265 4.0E-49 T 29-03-2018 Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 Gene3D G3DSA:3.40.50.720 1 50 9.8E-11 T 29-03-2018 Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 SUPERFAMILY SSF51735 4 262 1.8E-64 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15650 fe15f774b1a803417034d0265108fe1e 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 262 5.5E-45 T 29-03-2018 Y880_RS18830 74104fcd5dc49c3278097e86646037f2 195 Pfam PF01126 Heme oxygenase 9 192 5.2E-34 T 29-03-2018 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS18830 74104fcd5dc49c3278097e86646037f2 195 Gene3D G3DSA:1.20.910.10 2 193 1.0E-21 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS18830 74104fcd5dc49c3278097e86646037f2 195 SUPERFAMILY SSF48613 7 191 1.16E-41 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS26750 cdb24be0b673d70d9f2777e63ba15443 125 SUPERFAMILY SSF143410 2 113 3.01E-45 T 29-03-2018 IPR023389 DOPA-like domain Y880_RS26750 cdb24be0b673d70d9f2777e63ba15443 125 Gene3D G3DSA:3.30.70.1240 3 113 3.4E-41 T 29-03-2018 IPR023389 DOPA-like domain Y880_RS26750 cdb24be0b673d70d9f2777e63ba15443 125 Pfam PF08883 Dopa 4,5-dioxygenase family 12 111 6.8E-34 T 29-03-2018 IPR014980 Dopa 4,5-dioxygenase Y880_RS26750 cdb24be0b673d70d9f2777e63ba15443 125 PIRSF PIRSF028139 2 115 1.2E-47 T 29-03-2018 IPR014980 Dopa 4,5-dioxygenase Y880_RS06730 30365ebad14b3a899ffe08741c954882 63 Pfam PF10783 Protein of unknown function (DUF2599) 15 63 5.3E-18 T 29-03-2018 IPR019719 Protein of unknown function DUF2599 Y880_RS21665 dbf0370b941acdccd432cc0a7ff78896 299 Pfam PF13411 MerR HTH family regulatory protein 12 78 8.5E-18 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS21665 dbf0370b941acdccd432cc0a7ff78896 299 SMART SM00422 11 80 1.8E-22 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS21665 dbf0370b941acdccd432cc0a7ff78896 299 SUPERFAMILY SSF46955 12 109 8.24E-21 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS21665 dbf0370b941acdccd432cc0a7ff78896 299 Gene3D G3DSA:1.10.1660.10 2 144 2.8E-24 T 29-03-2018 Y880_RS00580 f3ace5b8df003e3f54b8756153dd2a3a 494 Gene3D G3DSA:1.10.4100.10 1 341 3.2E-102 T 29-03-2018 Y880_RS00580 f3ace5b8df003e3f54b8756153dd2a3a 494 SUPERFAMILY SSF103378 13 492 1.26E-152 T 29-03-2018 IPR005656 MmgE/PrpD GO:0016829 Y880_RS00580 f3ace5b8df003e3f54b8756153dd2a3a 494 Pfam PF03972 MmgE/PrpD family 18 477 2.3E-152 T 29-03-2018 IPR005656 MmgE/PrpD GO:0016829 Y880_RS00580 f3ace5b8df003e3f54b8756153dd2a3a 494 Gene3D G3DSA:1.10.4100.10 391 494 1.1E-14 T 29-03-2018 Y880_RS00580 f3ace5b8df003e3f54b8756153dd2a3a 494 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 14 494 8.2E-280 T 29-03-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 Pfam PF01197 Ribosomal protein L31 1 79 5.7E-25 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 PRINTS PR01249 Ribosomal protein L31 signature 2 19 6.7E-15 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 PRINTS PR01249 Ribosomal protein L31 signature 45 60 6.7E-15 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 PRINTS PR01249 Ribosomal protein L31 signature 60 78 6.7E-15 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 1.5E-15 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 SUPERFAMILY SSF143800 1 81 6.28E-22 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16155 b01a8fdd049f36c87ad00075923c2d5c 87 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 27.111 T 29-03-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS26415 c3d49b8ad11e0c91833513e974b2278b 319 Gene3D G3DSA:3.40.190.10 171 317 3.6E-45 T 29-03-2018 Y880_RS26415 c3d49b8ad11e0c91833513e974b2278b 319 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 10 315 2.3E-117 T 29-03-2018 IPR011852 TRAP transporter solute receptor, TAXI family Y880_RS26415 c3d49b8ad11e0c91833513e974b2278b 319 Gene3D G3DSA:3.40.190.10 23 170 3.7E-18 T 29-03-2018 Y880_RS26415 c3d49b8ad11e0c91833513e974b2278b 319 SUPERFAMILY SSF53850 26 317 2.32E-75 T 29-03-2018 Y880_RS26415 c3d49b8ad11e0c91833513e974b2278b 319 Pfam PF16868 NMT1-like family 31 315 8.9E-97 T 29-03-2018 IPR011852 TRAP transporter solute receptor, TAXI family Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 SUPERFAMILY SSF46785 1 80 1.85E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 SUPERFAMILY SSF53850 91 294 3.02E-45 T 29-03-2018 Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 Pfam PF03466 LysR substrate binding domain 89 293 1.2E-51 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 Gene3D G3DSA:1.10.10.10 1 85 5.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 Gene3D G3DSA:3.40.190.10 89 177 2.5E-19 T 29-03-2018 Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 Gene3D G3DSA:3.40.190.10 178 268 6.0E-23 T 29-03-2018 Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 8.8E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 8.8E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 8.8E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS25845 e78e92ef48c5726a543a5a62c6dd0d53 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 7.3E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS20995 397139c9c6896c1fdd309041d3330141 149 Gene3D G3DSA:2.40.33.20 1 147 1.1E-17 T 29-03-2018 Y880_RS20995 397139c9c6896c1fdd309041d3330141 149 SUPERFAMILY SSF50800 4 143 3.19E-34 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS20995 397139c9c6896c1fdd309041d3330141 149 Pfam PF03473 MOSC domain 39 140 4.3E-6 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y880_RS08385 38f1ea2cbace0fb358617538e52ec4a0 385 Gene3D G3DSA:1.20.1090.10 183 385 6.1E-57 T 29-03-2018 Y880_RS08385 38f1ea2cbace0fb358617538e52ec4a0 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y880_RS08385 38f1ea2cbace0fb358617538e52ec4a0 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 371 1.0E-112 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y880_RS08385 38f1ea2cbace0fb358617538e52ec4a0 385 SUPERFAMILY SSF56796 3 381 1.57E-114 T 29-03-2018 Y880_RS08385 38f1ea2cbace0fb358617538e52ec4a0 385 Gene3D G3DSA:3.40.50.1970 8 182 7.6E-45 T 29-03-2018 Y880_RS16320 3ed5656cd1a3bf169d767ca13b889b71 234 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 230 5.0E-76 T 29-03-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y880_RS16320 3ed5656cd1a3bf169d767ca13b889b71 234 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 108 115 - T 29-03-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y880_RS16320 3ed5656cd1a3bf169d767ca13b889b71 234 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 227 2.4E-64 T 29-03-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y880_RS16320 3ed5656cd1a3bf169d767ca13b889b71 234 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 8 232 41.354 T 29-03-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y880_RS16320 3ed5656cd1a3bf169d767ca13b889b71 234 SUPERFAMILY SSF53448 10 230 5.18E-55 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS16320 3ed5656cd1a3bf169d767ca13b889b71 234 Gene3D G3DSA:3.90.550.10 3 233 9.9E-45 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 SUPERFAMILY SSF50891 2 162 4.53E-57 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 5.4E-13 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 5.4E-13 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 5.4E-13 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 PIRSF PIRSF001467 1 165 2.9E-26 T 29-03-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 161 5.3E-46 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 Gene3D G3DSA:2.40.100.10 1 165 1.8E-48 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS06060 704a816bda8e44edabe4ef298654f1e3 165 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 29-03-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Y880_RS05715 94e67546f48dddc3e8d30b12b615e005 215 Gene3D G3DSA:3.40.50.880 2 210 5.5E-44 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS05715 94e67546f48dddc3e8d30b12b615e005 215 Pfam PF00117 Glutamine amidotransferase class-I 22 178 1.3E-16 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS05715 94e67546f48dddc3e8d30b12b615e005 215 SUPERFAMILY SSF52317 3 193 1.22E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS18465 63d5584853e6585a69fa176334c30b6c 265 Pfam PF01497 Periplasmic binding protein 22 218 2.0E-24 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 Y880_RS18465 63d5584853e6585a69fa176334c30b6c 265 Gene3D G3DSA:3.40.50.1980 18 124 2.9E-27 T 29-03-2018 Y880_RS18465 63d5584853e6585a69fa176334c30b6c 265 Gene3D G3DSA:3.40.50.1980 125 264 7.4E-22 T 29-03-2018 Y880_RS18465 63d5584853e6585a69fa176334c30b6c 265 SUPERFAMILY SSF53807 19 261 3.92E-52 T 29-03-2018 Y880_RS00040 ed168a40ae6f2562850582b0a6aa80eb 181 Gene3D G3DSA:1.10.10.10 95 171 2.1E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS00040 ed168a40ae6f2562850582b0a6aa80eb 181 Pfam PF08281 Sigma-70, region 4 109 161 1.4E-14 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00040 ed168a40ae6f2562850582b0a6aa80eb 181 Pfam PF04542 Sigma-70 region 2 17 73 2.5E-4 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00040 ed168a40ae6f2562850582b0a6aa80eb 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 159 2.0E-18 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00040 ed168a40ae6f2562850582b0a6aa80eb 181 SUPERFAMILY SSF88659 92 170 3.92E-12 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS00040 ed168a40ae6f2562850582b0a6aa80eb 181 Gene3D G3DSA:1.10.1740.10 1 79 1.1E-8 T 29-03-2018 Y880_RS00040 ed168a40ae6f2562850582b0a6aa80eb 181 SUPERFAMILY SSF88946 2 72 7.06E-9 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS05745 ae7e733a70583be5d24fb8082fa9ce14 273 SUPERFAMILY SSF46626 162 269 1.1E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05745 ae7e733a70583be5d24fb8082fa9ce14 273 Pfam PF00034 Cytochrome c 181 264 6.2E-10 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS05745 ae7e733a70583be5d24fb8082fa9ce14 273 Gene3D G3DSA:3.90.420.10 13 158 3.2E-4 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS05745 ae7e733a70583be5d24fb8082fa9ce14 273 Gene3D G3DSA:1.10.760.10 159 272 4.1E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29820 0a47031b630d45f1b65054b3460358b0 386 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 106 272 3.1E-33 T 29-03-2018 IPR035089 Tail sheath protein, subtilisin-like domain Y880_RS29820 0a47031b630d45f1b65054b3460358b0 386 Pfam PF17482 Phage tail sheath C-terminal domain 273 375 2.7E-20 T 29-03-2018 IPR020287 Tail sheath protein, C-terminal domain Y880_RS12120 5998d4b981ffe5e462889069809f803f 375 SUPERFAMILY SSF53187 107 373 8.13E-53 T 29-03-2018 Y880_RS12120 5998d4b981ffe5e462889069809f803f 375 Gene3D G3DSA:3.40.630.10 101 368 4.5E-40 T 29-03-2018 Y880_RS12120 5998d4b981ffe5e462889069809f803f 375 Pfam PF00246 Zinc carboxypeptidase 134 339 3.3E-18 T 29-03-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Y880_RS04080 1b518ceed133faba4e1c599ba39991b8 297 Gene3D G3DSA:3.40.190.10 92 184 2.4E-18 T 29-03-2018 Y880_RS04080 1b518ceed133faba4e1c599ba39991b8 297 Pfam PF03466 LysR substrate binding domain 92 294 2.5E-37 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS04080 1b518ceed133faba4e1c599ba39991b8 297 SUPERFAMILY SSF46785 7 91 6.73E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04080 1b518ceed133faba4e1c599ba39991b8 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.4E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS04080 1b518ceed133faba4e1c599ba39991b8 297 Gene3D G3DSA:3.40.190.10 185 262 1.7E-6 T 29-03-2018 Y880_RS04080 1b518ceed133faba4e1c599ba39991b8 297 SUPERFAMILY SSF53850 93 294 4.5E-35 T 29-03-2018 Y880_RS04080 1b518ceed133faba4e1c599ba39991b8 297 Gene3D G3DSA:1.10.10.10 3 86 4.2E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29525 f43ca2954e415b463fda48c735d09799 112 Gene3D G3DSA:1.20.1290.10 2 112 2.0E-25 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS29525 f43ca2954e415b463fda48c735d09799 112 SUPERFAMILY SSF69118 5 111 1.13E-29 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS29525 f43ca2954e415b463fda48c735d09799 112 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 40 90 1.5E-19 T 29-03-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS29525 f43ca2954e415b463fda48c735d09799 112 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 1.4E-19 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS02655 cfe5084716fe77040069c0b90e114ec7 415 PIRSF PIRSF000355 64 415 2.0E-142 T 29-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS02655 cfe5084716fe77040069c0b90e114ec7 415 SUPERFAMILY SSF47240 56 388 5.73E-98 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS02655 cfe5084716fe77040069c0b90e114ec7 415 Gene3D G3DSA:1.10.620.20 50 396 5.6E-102 T 29-03-2018 Y880_RS02655 cfe5084716fe77040069c0b90e114ec7 415 Pfam PF00268 Ribonucleotide reductase, small chain 95 382 1.1E-85 T 29-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y880_RS16735 5ac7edbeefa2b55e5371dbf3ad1f9e69 566 Pfam PF14903 WG containing repeat 316 336 0.0085 T 29-03-2018 IPR032774 WG containing repeat Y880_RS16735 5ac7edbeefa2b55e5371dbf3ad1f9e69 566 Pfam PF14903 WG containing repeat 130 164 4.7E-4 T 29-03-2018 IPR032774 WG containing repeat Y880_RS20395 d23a2dd63695431d8c931cd4ceeae15d 97 Hamap MF_00910 Cell division protein FtsL [ftsL]. 12 95 15.538 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 Y880_RS20395 d23a2dd63695431d8c931cd4ceeae15d 97 Pfam PF04999 Cell division protein FtsL 1 96 2.1E-32 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 Y880_RS20395 d23a2dd63695431d8c931cd4ceeae15d 97 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 13 95 9.3E-24 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 Y880_RS05560 2b04936df0ed22b9aada18c603d24638 288 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 30 276 8.1E-75 T 29-03-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 Y880_RS05560 2b04936df0ed22b9aada18c603d24638 288 Pfam PF07201 HrpJ-like domain 54 217 2.9E-38 T 29-03-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 Y880_RS05560 2b04936df0ed22b9aada18c603d24638 288 SUPERFAMILY SSF140591 68 263 9.42E-55 T 29-03-2018 Y880_RS21850 78e5b392efc217d6261481daf31b5a7f 214 SMART SM00947 30 193 3.6E-65 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS21850 78e5b392efc217d6261481daf31b5a7f 214 Gene3D G3DSA:3.40.1050.10 1 208 2.7E-69 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS21850 78e5b392efc217d6261481daf31b5a7f 214 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS21850 78e5b392efc217d6261481daf31b5a7f 214 Pfam PF00484 Carbonic anhydrase 37 187 7.4E-50 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS21850 78e5b392efc217d6261481daf31b5a7f 214 SUPERFAMILY SSF53056 1 202 4.19E-73 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y880_RS29065 905f119326c4275c575ab4f87ed6d741 189 SUPERFAMILY SSF48498 79 187 2.91E-18 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS29065 905f119326c4275c575ab4f87ed6d741 189 Gene3D G3DSA:1.10.357.10 59 188 3.5E-15 T 29-03-2018 Y880_RS29065 905f119326c4275c575ab4f87ed6d741 189 SUPERFAMILY SSF46689 8 72 1.64E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS29065 905f119326c4275c575ab4f87ed6d741 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 7.0E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS29065 905f119326c4275c575ab4f87ed6d741 189 Gene3D G3DSA:1.10.10.60 2 58 1.1E-10 T 29-03-2018 Y880_RS04335 0519f457775398b7611c2024df6b53bd 111 Gene3D G3DSA:3.40.1690.10 9 86 2.7E-24 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y880_RS04335 0519f457775398b7611c2024df6b53bd 111 Pfam PF01312 FlhB HrpN YscU SpaS Family 12 81 2.1E-16 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS04335 0519f457775398b7611c2024df6b53bd 111 SUPERFAMILY SSF160544 10 86 2.88E-19 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 80 94 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 151 2.8E-32 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 SUPERFAMILY SSF50129 9 192 3.96E-51 T 29-03-2018 IPR011032 GroES-like Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 Gene3D G3DSA:3.90.180.10 11 175 2.1E-50 T 29-03-2018 Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 Gene3D G3DSA:3.40.50.10730 176 305 9.8E-28 T 29-03-2018 Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 SMART SM00829 18 359 9.1E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 Pfam PF00107 Zinc-binding dehydrogenase 194 320 2.0E-28 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 Pfam PF13823 Alcohol dehydrogenase GroES-associated 11 28 2.6E-6 T 29-03-2018 IPR027399 Alcohol dehydrogenase GroES-associated Y880_RS19020 3077ad2cbb8e603a2c2d49f4dbd47311 363 SUPERFAMILY SSF51735 159 315 4.78E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS17455 0aa80802092e3fdef38eec9d4790df77 451 Gene3D G3DSA:3.40.190.10 41 127 2.1E-8 T 29-03-2018 Y880_RS17455 0aa80802092e3fdef38eec9d4790df77 451 Gene3D G3DSA:3.40.190.10 128 304 4.2E-15 T 29-03-2018 Y880_RS17455 0aa80802092e3fdef38eec9d4790df77 451 SUPERFAMILY SSF53850 41 319 5.02E-41 T 29-03-2018 Y880_RS17455 0aa80802092e3fdef38eec9d4790df77 451 Pfam PF16868 NMT1-like family 46 319 2.5E-20 T 29-03-2018 IPR011852 TRAP transporter solute receptor, TAXI family Y880_RS24370 100904f0810db1244ac53a7e85690798 156 SMART SM00347 32 132 5.0E-24 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS24370 100904f0810db1244ac53a7e85690798 156 SUPERFAMILY SSF46785 14 145 9.0E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24370 100904f0810db1244ac53a7e85690798 156 Pfam PF01047 MarR family 39 96 8.6E-13 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS24370 100904f0810db1244ac53a7e85690798 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 4.8E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS24370 100904f0810db1244ac53a7e85690798 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 4.8E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS24370 100904f0810db1244ac53a7e85690798 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 4.8E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS24370 100904f0810db1244ac53a7e85690798 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 4.8E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS24370 100904f0810db1244ac53a7e85690798 156 ProSitePatterns PS01117 MarR-type HTH domain signature. 71 105 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y880_RS24370 100904f0810db1244ac53a7e85690798 156 Gene3D G3DSA:1.10.10.10 5 146 2.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS25735 6dfd2b7d74ec1f3a7ec292d6587ba5a2 106 Gene3D G3DSA:3.30.2270.10 1 89 5.6E-38 T 29-03-2018 Y880_RS25735 6dfd2b7d74ec1f3a7ec292d6587ba5a2 106 Pfam PF04267 Sarcosine oxidase, delta subunit family 4 84 6.6E-37 T 29-03-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y880_RS25735 6dfd2b7d74ec1f3a7ec292d6587ba5a2 106 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 3 87 2.1E-40 T 29-03-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y880_RS24695 e20034a17645d534c9b07cee73337855 397 SUPERFAMILY SSF103473 10 379 2.49E-45 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS24695 e20034a17645d534c9b07cee73337855 397 Gene3D G3DSA:1.20.1250.20 7 191 8.2E-19 T 29-03-2018 Y880_RS24695 e20034a17645d534c9b07cee73337855 397 Gene3D G3DSA:1.20.1250.20 194 394 5.0E-16 T 29-03-2018 Y880_RS24695 e20034a17645d534c9b07cee73337855 397 Pfam PF07690 Major Facilitator Superfamily 12 346 2.1E-35 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS23300 d433121bab8dace4463604028ae0c79f 503 Gene3D G3DSA:1.10.3210.10 1 300 4.6E-10 T 29-03-2018 Y880_RS23300 d433121bab8dace4463604028ae0c79f 503 Pfam PF08668 HDOD domain 17 200 3.7E-13 T 29-03-2018 IPR013976 Metal-dependent hydrolase HDOD Y880_RS23300 d433121bab8dace4463604028ae0c79f 503 SUPERFAMILY SSF109604 235 246 1.35E-18 T 29-03-2018 Y880_RS23300 d433121bab8dace4463604028ae0c79f 503 SUPERFAMILY SSF109604 13 206 1.35E-18 T 29-03-2018 Y880_RS04795 a89145b2963255e7c9ff9be5c6981b29 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS04795 a89145b2963255e7c9ff9be5c6981b29 475 Gene3D G3DSA:1.20.210.10 3 475 1.4E-94 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS04795 a89145b2963255e7c9ff9be5c6981b29 475 SUPERFAMILY SSF81442 9 468 9.55E-122 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS04795 a89145b2963255e7c9ff9be5c6981b29 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 472 6.5E-226 T 29-03-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y880_RS04795 a89145b2963255e7c9ff9be5c6981b29 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 442 4.0E-112 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS05275 038f4f9bba10ec4d5ce22ca68c0af590 135 Pfam PF16985 Domain of unknown function (DUF5086) 5 133 9.5E-61 T 29-03-2018 IPR031561 Protein of unknown function DUF5086 Y880_RS18340 0e2d91198d8b979fb56724d27aa5180e 209 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 200 9.3E-62 T 29-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 Y880_RS18340 0e2d91198d8b979fb56724d27aa5180e 209 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 202 36.238 T 29-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 Y880_RS18340 0e2d91198d8b979fb56724d27aa5180e 209 Pfam PF02441 Flavoprotein 6 181 1.1E-24 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y880_RS18340 0e2d91198d8b979fb56724d27aa5180e 209 SUPERFAMILY SSF52507 6 202 1.7E-59 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y880_RS18340 0e2d91198d8b979fb56724d27aa5180e 209 Gene3D G3DSA:3.40.50.1950 5 209 3.5E-52 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y880_RS14250 b439e58b3085f44731df075cc5596b79 84 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 7.6E-38 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y880_RS14250 b439e58b3085f44731df075cc5596b79 84 Gene3D G3DSA:3.30.1070.10 1 83 2.8E-31 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y880_RS14250 b439e58b3085f44731df075cc5596b79 84 SUPERFAMILY SSF55229 33 83 2.48E-17 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y880_RS14250 b439e58b3085f44731df075cc5596b79 84 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 84 20.708 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y880_RS14250 b439e58b3085f44731df075cc5596b79 84 Pfam PF03776 Septum formation topological specificity factor MinE 15 82 6.5E-28 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y880_RS06705 a175e2facfc64c2e3ed23f9c05e30f7d 383 Pfam PF03929 PepSY-associated TM region 12 360 1.2E-54 T 29-03-2018 IPR005625 PepSY-associated TM protein Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 SMART SM00387 358 470 2.0E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 Pfam PF00672 HAMP domain 195 244 3.7E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 313 1.0E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 SMART SM00304 195 248 1.5E-11 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 SUPERFAMILY SSF55874 305 467 4.58E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 Gene3D G3DSA:3.30.565.10 319 472 2.9E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 SUPERFAMILY SSF47384 232 314 1.26E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 467 5.4E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 SMART SM00388 249 315 2.4E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 9.5E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 9.5E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 448 9.5E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 5 467 1.4E-179 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 SUPERFAMILY SSF158472 198 245 4.84E-7 T 29-03-2018 Y880_RS09970 f706c23bbdacf9c72285144110252c09 472 Gene3D G3DSA:1.10.287.130 239 310 3.5E-9 T 29-03-2018 Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 Gene3D G3DSA:2.140.10.10 275 380 9.0E-7 T 29-03-2018 Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 Gene3D G3DSA:2.140.10.10 21 178 2.0E-27 T 29-03-2018 Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 Gene3D G3DSA:2.140.10.10 179 274 1.5E-11 T 29-03-2018 Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 5 377 7.0E-140 T 29-03-2018 IPR017687 Outer membrane protein assembly factor BamB Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 1 379 39.536 T 29-03-2018 IPR017687 Outer membrane protein assembly factor BamB Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 SMART SM00564 317 348 220.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 SMART SM00564 101 133 0.04 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 SMART SM00564 238 269 14.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 SMART SM00564 142 173 3.7 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 SMART SM00564 62 93 0.0015 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 SMART SM00564 187 218 180.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 SUPERFAMILY SSF50998 29 369 1.37E-77 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y880_RS17205 61441bf5e02e1aef8422d2d7ff5d9550 380 Pfam PF13360 PQQ-like domain 75 305 9.8E-51 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y880_RS17385 288f8c3aefffe50e178f93b46a6860f0 137 Pfam PF09413 Putative prokaryotic signal transducing protein 5 66 9.4E-9 T 29-03-2018 IPR018551 Domain of unknown function DUF2007 Y880_RS17385 288f8c3aefffe50e178f93b46a6860f0 137 Gene3D G3DSA:3.30.70.790 2 74 3.9E-15 T 29-03-2018 Y880_RS17385 288f8c3aefffe50e178f93b46a6860f0 137 SUPERFAMILY SSF54913 4 67 4.89E-6 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 SUPERFAMILY SSF53041 3 145 1.96E-38 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 Gene3D G3DSA:1.20.5.40 115 143 7.7E-16 T 29-03-2018 Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 Pfam PF00239 Resolvase, N terminal domain 5 145 7.2E-37 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 Pfam PF07638 ECF sigma factor 145 188 1.4E-4 T 29-03-2018 IPR011517 RNA polymerase sigma-70 ECF-like Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 Gene3D G3DSA:1.10.10.60 145 190 1.7E-10 T 29-03-2018 Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 SMART SM00857 4 145 1.2E-47 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 Gene3D G3DSA:3.40.50.1390 1 114 8.6E-32 T 29-03-2018 Y880_RS04645 24b6da6c8468a03abb4b8a19912172d3 191 ProSitePatterns PS00398 Site-specific recombinases signature 2. 63 75 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Y880_RS00975 64767230ff1b2c341bfb0605bb4585af 670 Pfam PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal 29 501 8.4E-175 T 29-03-2018 IPR031329 Neutral/alkaline non-lysosomal ceramidase, N-terminal KEGG: 00600+3.5.1.23|MetaCyc: PWY-6483|MetaCyc: PWY-7119|Reactome: R-HSA-1660662 Y880_RS00975 64767230ff1b2c341bfb0605bb4585af 670 Pfam PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal 505 665 2.3E-47 T 29-03-2018 IPR031331 Neutral/alkaline non-lysosomal ceramidase, C-terminal KEGG: 00600+3.5.1.23|MetaCyc: PWY-6483|MetaCyc: PWY-7119 Y880_RS26800 c567648722a7e1fc54eed61e63988c34 230 Pfam PF01797 Transposase IS200 like 11 123 7.0E-17 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS26800 c567648722a7e1fc54eed61e63988c34 230 Gene3D G3DSA:3.30.70.1290 2 133 1.6E-30 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS26800 c567648722a7e1fc54eed61e63988c34 230 SUPERFAMILY SSF143422 3 128 2.88E-31 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS26800 c567648722a7e1fc54eed61e63988c34 230 SMART SM01321 9 125 6.9E-44 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS10275 0bbccb2917ed2e6de84c76f98547316a 186 Pfam PF00583 Acetyltransferase (GNAT) family 35 149 1.1E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS10275 0bbccb2917ed2e6de84c76f98547316a 186 SUPERFAMILY SSF55729 10 179 4.01E-35 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS10275 0bbccb2917ed2e6de84c76f98547316a 186 Gene3D G3DSA:3.40.630.30 2 186 3.7E-40 T 29-03-2018 Y880_RS17610 56ee0c3dff1fdad7a2861dbe6328a0df 131 PIRSF PIRSF037181 1 130 9.7E-53 T 29-03-2018 IPR014958 DGC Y880_RS17610 56ee0c3dff1fdad7a2861dbe6328a0df 131 Pfam PF08859 DGC domain 13 115 8.2E-31 T 29-03-2018 IPR014958 DGC Y880_RS24525 dd5f2115c819b831c26f3ab83c6e1b72 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y880_RS24525 dd5f2115c819b831c26f3ab83c6e1b72 387 Gene3D G3DSA:1.20.1090.10 186 387 3.4E-63 T 29-03-2018 Y880_RS24525 dd5f2115c819b831c26f3ab83c6e1b72 387 Gene3D G3DSA:3.40.50.1970 1 185 7.6E-43 T 29-03-2018 Y880_RS24525 dd5f2115c819b831c26f3ab83c6e1b72 387 SUPERFAMILY SSF56796 2 387 1.06E-114 T 29-03-2018 Y880_RS24525 dd5f2115c819b831c26f3ab83c6e1b72 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 378 4.6E-114 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y880_RS07445 c37aaf3be4e674dedd4ef3afbe4d3021 168 SUPERFAMILY SSF103473 9 168 1.44E-33 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS07445 c37aaf3be4e674dedd4ef3afbe4d3021 168 Pfam PF07690 Major Facilitator Superfamily 15 168 1.2E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS07445 c37aaf3be4e674dedd4ef3afbe4d3021 168 Gene3D G3DSA:1.20.1250.20 7 168 2.0E-26 T 29-03-2018 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 466 663 1.3E-24 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 SUPERFAMILY SSF81606 448 659 4.45E-6 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 SUPERFAMILY SSF158472 337 386 1.01E-9 T 29-03-2018 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 SMART SM00304 337 389 4.0E-14 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 Gene3D G3DSA:3.30.450.20 163 303 1.2E-8 T 29-03-2018 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 Gene3D G3DSA:3.60.40.10 404 663 1.6E-21 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 SMART SM00331 439 662 4.6E-9 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS27485 d58695a1205bcdbd151db69dfeb62e0f 663 Pfam PF00672 HAMP domain 337 386 1.1E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS16085 8bf2b3554bd099ea4573ff314aa10d99 416 Gene3D G3DSA:2.40.160.10 6 416 3.4E-109 T 29-03-2018 Y880_RS16085 8bf2b3554bd099ea4573ff314aa10d99 416 Pfam PF03573 outer membrane porin, OprD family 25 414 1.4E-146 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS00555 33e4179862f4a0002916d09419d71f73 1041 Pfam PF00912 Transglycosylase 162 358 8.7E-26 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS00555 33e4179862f4a0002916d09419d71f73 1041 Gene3D G3DSA:3.40.710.10 409 1030 6.4E-63 T 29-03-2018 Y880_RS00555 33e4179862f4a0002916d09419d71f73 1041 SUPERFAMILY SSF53955 171 389 1.27E-9 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS00555 33e4179862f4a0002916d09419d71f73 1041 SUPERFAMILY SSF56601 749 1023 2.5E-26 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS00555 33e4179862f4a0002916d09419d71f73 1041 Gene3D G3DSA:1.10.3810.10 155 391 8.2E-29 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 Y880_RS00625 7601e5f71325be64731700e808371f77 506 Pfam PF03929 PepSY-associated TM region 10 356 5.2E-59 T 29-03-2018 IPR005625 PepSY-associated TM protein Y880_RS24220 50f19f1d45ff6f34da6e2ba3ca9318b7 139 Gene3D G3DSA:3.40.250.10 29 139 1.4E-22 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS24220 50f19f1d45ff6f34da6e2ba3ca9318b7 139 Pfam PF00581 Rhodanese-like domain 43 131 4.8E-11 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS24220 50f19f1d45ff6f34da6e2ba3ca9318b7 139 SMART SM00450 40 136 5.7E-14 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS24220 50f19f1d45ff6f34da6e2ba3ca9318b7 139 SUPERFAMILY SSF52821 16 139 3.27E-29 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS08420 b2cbfb3933f450b61134b2c1a9469dea 474 Gene3D G3DSA:2.50.20.10 172 470 1.1E-45 T 29-03-2018 Y880_RS08420 b2cbfb3933f450b61134b2c1a9469dea 474 Pfam PF07044 Protein of unknown function (DUF1329) 97 469 6.1E-120 T 29-03-2018 IPR010752 Protein of unknown function DUF1329 Y880_RS15535 c43f0be446ea104216acfca820773b43 364 Gene3D G3DSA:3.30.300.130 2 90 2.9E-11 T 29-03-2018 IPR034904 Fe-S cluster assembly domain Y880_RS15535 c43f0be446ea104216acfca820773b43 364 SUPERFAMILY SSF117916 4 82 1.01E-14 T 29-03-2018 IPR034904 Fe-S cluster assembly domain Y880_RS15535 c43f0be446ea104216acfca820773b43 364 ProSitePatterns PS01215 Mrp family signature. 206 222 - T 29-03-2018 IPR000808 Mrp, conserved site GO:0005524 Y880_RS15535 c43f0be446ea104216acfca820773b43 364 Gene3D G3DSA:3.40.50.300 91 321 1.6E-65 T 29-03-2018 Y880_RS15535 c43f0be446ea104216acfca820773b43 364 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 97 342 6.9E-100 T 29-03-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Y880_RS15535 c43f0be446ea104216acfca820773b43 364 Pfam PF01883 Iron-sulfur cluster assembly protein 6 77 8.2E-16 T 29-03-2018 IPR002744 MIP18 family-like Y880_RS15535 c43f0be446ea104216acfca820773b43 364 Hamap MF_02040 Iron-sulfur cluster carrier protein. 93 343 36.457 T 29-03-2018 IPR019591 Mrp/NBP35 ATP-binding protein Y880_RS15535 c43f0be446ea104216acfca820773b43 364 SUPERFAMILY SSF52540 89 327 8.55E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02530 05fe6bebbb4b19464a51530e31c9a888 325 SUPERFAMILY SSF53448 9 280 5.25E-23 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02530 05fe6bebbb4b19464a51530e31c9a888 325 Pfam PF00535 Glycosyl transferase family 2 31 173 7.6E-7 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS02530 05fe6bebbb4b19464a51530e31c9a888 325 TIGRFAM TIGR01556 rhamnosyltran: rhamnosyltransferase 11 291 1.3E-118 T 29-03-2018 IPR006446 Rhamnosyltransferase Y880_RS02530 05fe6bebbb4b19464a51530e31c9a888 325 Gene3D G3DSA:3.90.550.10 5 224 7.9E-18 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS22915 7f1fbb972d9f7d2585fcc6f4c7d07415 177 Gene3D G3DSA:1.20.1260.10 10 177 4.8E-43 T 29-03-2018 IPR012347 Ferritin-related Y880_RS22915 7f1fbb972d9f7d2585fcc6f4c7d07415 177 SUPERFAMILY SSF47240 31 175 5.02E-38 T 29-03-2018 IPR009078 Ferritin-like superfamily Y880_RS22915 7f1fbb972d9f7d2585fcc6f4c7d07415 177 Pfam PF00210 Ferritin-like domain 39 176 3.4E-28 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y880_RS22915 7f1fbb972d9f7d2585fcc6f4c7d07415 177 PIRSF PIRSF018063 12 177 8.1E-65 T 29-03-2018 IPR014490 DNA-binding protein from starved cells-like Y880_RS22915 7f1fbb972d9f7d2585fcc6f4c7d07415 177 PRINTS PR00601 Bacterioferritin signature 73 93 2.1E-6 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS22915 7f1fbb972d9f7d2585fcc6f4c7d07415 177 PRINTS PR00601 Bacterioferritin signature 32 51 2.1E-6 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS22915 7f1fbb972d9f7d2585fcc6f4c7d07415 177 PRINTS PR00601 Bacterioferritin signature 163 177 2.1E-6 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y880_RS23710 2a9ab7e9b74913fb30b10c0931adbc40 309 Pfam PF00106 short chain dehydrogenase 16 216 3.4E-24 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23710 2a9ab7e9b74913fb30b10c0931adbc40 309 SUPERFAMILY SSF51735 8 275 1.76E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS23710 2a9ab7e9b74913fb30b10c0931adbc40 309 Gene3D G3DSA:3.40.50.720 1 308 2.5E-52 T 29-03-2018 Y880_RS23710 2a9ab7e9b74913fb30b10c0931adbc40 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 6.9E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS23710 2a9ab7e9b74913fb30b10c0931adbc40 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 6.9E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS00335 a1ef6ac19b1bff8428a18e4191c28d1e 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 113 133 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Y880_RS00335 a1ef6ac19b1bff8428a18e4191c28d1e 272 Gene3D G3DSA:3.90.226.10 3 213 4.8E-62 T 29-03-2018 Y880_RS00335 a1ef6ac19b1bff8428a18e4191c28d1e 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 27 270 7.8E-53 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS00335 a1ef6ac19b1bff8428a18e4191c28d1e 272 SUPERFAMILY SSF52096 18 271 1.4E-78 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS00335 a1ef6ac19b1bff8428a18e4191c28d1e 272 Gene3D G3DSA:1.10.12.10 215 272 1.9E-14 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 Gene3D G3DSA:3.40.1690.10 212 347 2.7E-48 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 SUPERFAMILY SSF160544 238 343 8.37E-32 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 343 5.2E-142 T 29-03-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 Pfam PF01312 FlhB HrpN YscU SpaS Family 4 340 1.2E-110 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 281 8.4E-43 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 296 317 8.4E-43 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 202 220 8.4E-43 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 222 239 8.4E-43 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS05515 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 8.4E-43 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y880_RS23860 5067fe0be47c81b10a2bd6d5866d0c17 220 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 8 134 7.1E-46 T 29-03-2018 IPR008769 Poly granule associated Y880_RS23860 5067fe0be47c81b10a2bd6d5866d0c17 220 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 17 134 7.5E-44 T 29-03-2018 IPR008769 Poly granule associated Y880_RS23860 5067fe0be47c81b10a2bd6d5866d0c17 220 Gene3D G3DSA:1.20.1170.10 9 209 3.0E-5 T 29-03-2018 Y880_RS02030 edd6c89590da6ec2b9fab8e1d0349d53 392 Pfam PF00144 Beta-lactamase 29 384 3.5E-78 T 29-03-2018 IPR001466 Beta-lactamase-related Y880_RS02030 edd6c89590da6ec2b9fab8e1d0349d53 392 Gene3D G3DSA:3.40.710.10 7 392 3.8E-84 T 29-03-2018 Y880_RS02030 edd6c89590da6ec2b9fab8e1d0349d53 392 SUPERFAMILY SSF56601 18 385 1.34E-78 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS22910 cf408ada714ca3a3fed24ff50459e2de 689 Pfam PF05170 AsmA family 1 575 8.1E-182 T 29-03-2018 IPR007844 AsmA Y880_RS24905 65a05aa53eaf7d128b30f622d452b10e 251 Pfam PF02602 Uroporphyrinogen-III synthase HemD 17 244 3.1E-37 T 29-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS24905 65a05aa53eaf7d128b30f622d452b10e 251 Gene3D G3DSA:3.40.50.10090 126 251 2.7E-23 T 29-03-2018 Y880_RS24905 65a05aa53eaf7d128b30f622d452b10e 251 Gene3D G3DSA:3.40.50.10090 1 119 2.8E-20 T 29-03-2018 Y880_RS24905 65a05aa53eaf7d128b30f622d452b10e 251 SUPERFAMILY SSF69618 3 249 6.41E-55 T 29-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y880_RS27935 d8cd957ef946826f56b974138e37e5bd 483 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 3.3E-236 T 29-03-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 Y880_RS27935 d8cd957ef946826f56b974138e37e5bd 483 Gene3D G3DSA:3.40.309.10 273 464 3.4E-71 T 29-03-2018 Y880_RS27935 d8cd957ef946826f56b974138e37e5bd 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS27935 d8cd957ef946826f56b974138e37e5bd 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS27935 d8cd957ef946826f56b974138e37e5bd 483 Gene3D G3DSA:3.40.605.10 5 272 7.8E-106 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS27935 d8cd957ef946826f56b974138e37e5bd 483 SUPERFAMILY SSF53720 7 481 5.11E-175 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS27935 d8cd957ef946826f56b974138e37e5bd 483 Pfam PF00171 Aldehyde dehydrogenase family 19 477 4.4E-173 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 Gene3D G3DSA:3.40.50.300 29 258 1.7E-42 T 29-03-2018 Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 Gene3D G3DSA:3.30.1220.10 263 374 1.7E-20 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 SUPERFAMILY SSF52540 31 267 1.76E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 SUPERFAMILY SSF90002 293 374 3.14E-19 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 SMART SM00833 283 374 9.5E-8 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 30 370 7.8E-174 T 29-03-2018 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 295 374 6.9E-17 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y880_RS12710 d8c91c3b7da05141268da5a54d80e7c0 375 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 33 240 6.8E-59 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 SUPERFAMILY SSF54373 270 360 1.11E-17 T 29-03-2018 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 50.179 T 29-03-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 SUPERFAMILY SSF51905 1 54 2.07E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 SUPERFAMILY SSF51905 360 416 2.07E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 SUPERFAMILY SSF51905 107 270 2.07E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 Gene3D G3DSA:3.50.50.60 348 425 8.1E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 Gene3D G3DSA:3.30.9.10 136 216 2.4E-6 T 29-03-2018 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 Pfam PF01266 FAD dependent oxidoreductase 3 398 1.0E-70 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 Gene3D G3DSA:3.30.9.10 217 347 7.5E-21 T 29-03-2018 Y880_RS25135 80ba7b1828922b7c1092a7f4435af112 432 Gene3D G3DSA:3.40.50.720 1 135 1.6E-10 T 29-03-2018 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 Pfam PF01494 FAD binding domain 6 348 6.0E-34 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 Gene3D G3DSA:3.50.50.60 4 356 3.2E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 SUPERFAMILY SSF51905 271 364 5.44E-50 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 SUPERFAMILY SSF51905 6 174 5.44E-50 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 1.5E-20 T 29-03-2018 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.5E-20 T 29-03-2018 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 1.5E-20 T 29-03-2018 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 352 1.5E-20 T 29-03-2018 Y880_RS19225 f1f97ab32fed645616ffdd41902cd38f 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 1.5E-20 T 29-03-2018 Y880_RS22280 635a2daa3d6bcdee300298461a88c43e 216 PIRSF PIRSF006324 4 215 1.8E-57 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS22280 635a2daa3d6bcdee300298461a88c43e 216 Pfam PF01810 LysE type translocator 17 212 4.9E-57 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS22280 635a2daa3d6bcdee300298461a88c43e 216 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 23 210 2.0E-64 T 29-03-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 Y880_RS15015 740062ae963038aed0a7a06e2cd0f728 264 Gene3D G3DSA:1.10.3720.10 17 263 3.3E-29 T 29-03-2018 Y880_RS15015 740062ae963038aed0a7a06e2cd0f728 264 SUPERFAMILY SSF161098 67 258 1.13E-34 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS15015 740062ae963038aed0a7a06e2cd0f728 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 263 7.1E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS15015 740062ae963038aed0a7a06e2cd0f728 264 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 24 263 1.5E-92 T 29-03-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 Y880_RS19115 2ffefc53bcc390999a93c965b5317c86 187 SUPERFAMILY SSF52317 7 183 1.1E-43 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS19115 2ffefc53bcc390999a93c965b5317c86 187 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 184 7.2E-66 T 29-03-2018 IPR006286 Peptidase C56, PfpI Y880_RS19115 2ffefc53bcc390999a93c965b5317c86 187 Gene3D G3DSA:3.40.50.880 2 187 5.3E-44 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS19115 2ffefc53bcc390999a93c965b5317c86 187 Pfam PF01965 DJ-1/PfpI family 8 180 5.3E-39 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS21935 0984bd30d04bfa2b45e4a9eda8ce9116 337 SUPERFAMILY SSF56524 82 333 3.14E-91 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS21935 0984bd30d04bfa2b45e4a9eda8ce9116 337 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 3 337 55.091 T 29-03-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 Y880_RS21935 0984bd30d04bfa2b45e4a9eda8ce9116 337 Pfam PF00174 Oxidoreductase molybdopterin binding domain 114 271 3.4E-30 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS21935 0984bd30d04bfa2b45e4a9eda8ce9116 337 Gene3D G3DSA:3.90.420.10 65 296 7.4E-59 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS02255 cf6ecb94d00f39d2c3c37fe02eacc795 356 Gene3D G3DSA:3.40.47.10 181 335 5.4E-32 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS02255 cf6ecb94d00f39d2c3c37fe02eacc795 356 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 246 334 7.2E-25 T 29-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS02255 cf6ecb94d00f39d2c3c37fe02eacc795 356 SUPERFAMILY SSF53901 4 334 7.84E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS02255 cf6ecb94d00f39d2c3c37fe02eacc795 356 Gene3D G3DSA:3.40.47.10 4 180 1.3E-14 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS02255 cf6ecb94d00f39d2c3c37fe02eacc795 356 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 114 184 3.9E-7 T 29-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y880_RS01940 a8f1ddf5bd7532ad59a4022dac55ca30 122 SUPERFAMILY SSF47413 15 56 5.9E-8 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS01940 a8f1ddf5bd7532ad59a4022dac55ca30 122 Pfam PF09722 Protein of unknown function (DUF2384) 71 120 4.5E-14 T 29-03-2018 IPR024467 Domain of unknown function DUF2384 Y880_RS01940 a8f1ddf5bd7532ad59a4022dac55ca30 122 Gene3D G3DSA:3.30.1190.10 37 73 2.7E-5 T 29-03-2018 Y880_RS01940 a8f1ddf5bd7532ad59a4022dac55ca30 122 Pfam PF01381 Helix-turn-helix 21 48 1.1E-6 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS01940 a8f1ddf5bd7532ad59a4022dac55ca30 122 Gene3D G3DSA:1.10.10.60 1 36 4.0E-8 T 29-03-2018 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 3.8E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 298 327 3.8E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 402 3.8E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 452 481 3.8E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 Gene3D G3DSA:1.10.287.950 93 330 2.1E-8 T 29-03-2018 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 Gene3D G3DSA:1.10.287.950 331 528 6.7E-44 T 29-03-2018 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 337 490 2.3E-44 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 SUPERFAMILY SSF58104 255 526 1.12E-59 T 29-03-2018 Y880_RS11965 6b9388059af65bc3dcdeff7b60449e21 545 SMART SM00283 277 524 6.6E-67 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS05385 350dba4fbc7d0995219633e7a0f8edb5 397 Gene3D G3DSA:2.60.200.20 15 119 4.2E-15 T 29-03-2018 Y880_RS05385 350dba4fbc7d0995219633e7a0f8edb5 397 Pfam PF00498 FHA domain 30 96 7.9E-13 T 29-03-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Y880_RS05385 350dba4fbc7d0995219633e7a0f8edb5 397 SUPERFAMILY SSF49879 19 104 2.9E-16 T 29-03-2018 IPR008984 SMAD/FHA domain GO:0005515 Y880_RS05385 350dba4fbc7d0995219633e7a0f8edb5 397 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 3 386 7.2E-128 T 29-03-2018 IPR017735 Type VI secretion system, FHA domain-containing protein Y880_RS04070 09cb20442a4cdfb364e556db0e193414 139 SUPERFAMILY SSF54427 2 131 1.87E-21 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS04070 09cb20442a4cdfb364e556db0e193414 139 Gene3D G3DSA:3.10.450.50 1 135 1.8E-19 T 29-03-2018 Y880_RS04070 09cb20442a4cdfb364e556db0e193414 139 Pfam PF13474 SnoaL-like domain 9 131 8.9E-16 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS13685 9869c551f45f12211d24bcc4aaaa20c7 285 Pfam PF12146 Serine aminopeptidase, S33 68 177 9.0E-12 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 Y880_RS13685 9869c551f45f12211d24bcc4aaaa20c7 285 Gene3D G3DSA:3.40.50.1820 46 285 1.3E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS13685 9869c551f45f12211d24bcc4aaaa20c7 285 SUPERFAMILY SSF53474 58 252 7.69E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05550 67e3000b2deb2eb7da280b08459caa00 158 Pfam PF07321 Type III secretion protein YscO 3 151 3.6E-45 T 29-03-2018 IPR009929 Type III secretion sytem,YscO Y880_RS20210 9d2948cb61d1ff78f66b0cade758a56d 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 4.1E-24 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Y880_RS20210 9d2948cb61d1ff78f66b0cade758a56d 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 119 2.1E-32 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Y880_RS20210 9d2948cb61d1ff78f66b0cade758a56d 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 19.042 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Y880_RS29380 3052e7c203b5ab15691e993468767a82 341 Pfam PF04536 TPM domain 31 154 9.3E-41 T 29-03-2018 IPR007621 TPM domain Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 Pfam PF00202 Aminotransferase class-III 20 400 7.5E-126 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 8 404 7.1E-215 T 29-03-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 SUPERFAMILY SSF53383 16 402 5.32E-127 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 401 46.078 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 Gene3D G3DSA:3.90.1150.10 291 406 3.1E-32 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 400 7.6E-152 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 PIRSF PIRSF000521 172 403 1.6E-32 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 PIRSF PIRSF000521 28 159 1.8E-5 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS01245 e3ccfcfad45484157833d17a68d4d280 406 Gene3D G3DSA:3.40.640.10 50 290 2.0E-81 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS27880 f98e4e0ec5ee79790faa40133479ef78 228 Pfam PF06912 Protein of unknown function (DUF1275) 24 212 2.9E-32 T 29-03-2018 IPR010699 Protein of unknown function DUF1275 Y880_RS27880 f98e4e0ec5ee79790faa40133479ef78 228 Gene3D G3DSA:1.20.1250.20 7 224 4.3E-4 T 29-03-2018 Y880_RS25545 5e0eb206c11c55b7000149bf29b48664 458 Gene3D G3DSA:1.10.4100.10 237 444 3.8E-34 T 29-03-2018 Y880_RS25545 5e0eb206c11c55b7000149bf29b48664 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 454 3.7E-210 T 29-03-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y880_RS25545 5e0eb206c11c55b7000149bf29b48664 458 Pfam PF03315 Serine dehydratase beta chain 4 154 9.2E-55 T 29-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y880_RS25545 5e0eb206c11c55b7000149bf29b48664 458 Pfam PF03313 Serine dehydratase alpha chain 186 452 2.1E-103 T 29-03-2018 IPR005130 Serine dehydratase-like, alpha subunit Y880_RS25545 5e0eb206c11c55b7000149bf29b48664 458 SUPERFAMILY SSF143548 17 154 6.8E-45 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Y880_RS25545 5e0eb206c11c55b7000149bf29b48664 458 Gene3D G3DSA:3.30.1330.90 11 158 3.4E-53 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Y880_RS24645 1a38d4ef68d3066c73c058bb3c8a13ab 454 Gene3D G3DSA:2.40.320.10 1 213 1.4E-41 T 29-03-2018 Y880_RS24645 1a38d4ef68d3066c73c058bb3c8a13ab 454 SUPERFAMILY SSF55154 1 211 1.96E-40 T 29-03-2018 IPR033469 CYTH-like domain Reactome: R-HSA-196819 Y880_RS24645 1a38d4ef68d3066c73c058bb3c8a13ab 454 SMART SM01118 2 207 1.4E-32 T 29-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 Y880_RS24645 1a38d4ef68d3066c73c058bb3c8a13ab 454 Pfam PF01928 CYTH domain 3 201 5.5E-38 T 29-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 Y880_RS04345 ca8743b376f7faeb7d503ad0e0ae113c 234 Pfam PF00005 ABC transporter 30 169 4.0E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS04345 ca8743b376f7faeb7d503ad0e0ae113c 234 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS04345 ca8743b376f7faeb7d503ad0e0ae113c 234 SUPERFAMILY SSF52540 10 200 3.72E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS04345 ca8743b376f7faeb7d503ad0e0ae113c 234 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 14 214 8.4E-84 T 29-03-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 Y880_RS04345 ca8743b376f7faeb7d503ad0e0ae113c 234 Gene3D G3DSA:3.40.50.300 3 216 2.0E-41 T 29-03-2018 Y880_RS04345 ca8743b376f7faeb7d503ad0e0ae113c 234 SMART SM00382 38 218 5.8E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS09875 ad389fa79a61e20e4c1b68d7b10567c2 310 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 135 163 - T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y880_RS09875 ad389fa79a61e20e4c1b68d7b10567c2 310 SUPERFAMILY SSF49482 4 293 6.54E-95 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y880_RS09875 ad389fa79a61e20e4c1b68d7b10567c2 310 Pfam PF00775 Dioxygenase 105 291 2.9E-66 T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y880_RS09875 ad389fa79a61e20e4c1b68d7b10567c2 310 Gene3D G3DSA:2.60.130.10 2 309 2.6E-71 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y880_RS09875 ad389fa79a61e20e4c1b68d7b10567c2 310 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 8 290 4.6E-140 T 29-03-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 Y880_RS09875 ad389fa79a61e20e4c1b68d7b10567c2 310 Pfam PF04444 Catechol dioxygenase N terminus 27 95 2.2E-24 T 29-03-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 Y880_RS00320 45c07028364557af0cc253a27c91904d 214 SUPERFAMILY SSF81324 117 209 2.88E-16 T 29-03-2018 Y880_RS00320 45c07028364557af0cc253a27c91904d 214 Pfam PF07885 Ion channel 126 207 3.0E-12 T 29-03-2018 IPR013099 Potassium channel domain Y880_RS00320 45c07028364557af0cc253a27c91904d 214 Gene3D G3DSA:1.10.287.70 106 209 2.6E-15 T 29-03-2018 Y880_RS14370 6e6150c05bf67a22a9655f183700a548 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 2.4E-28 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y880_RS14370 6e6150c05bf67a22a9655f183700a548 104 SUPERFAMILY SSF103481 5 103 2.35E-19 T 29-03-2018 Y880_RS28595 c4207e35884fa1525f9cc0b9c247289a 139 Pfam PF14467 Domain of unknown function (DUF4426) 23 138 1.1E-40 T 29-03-2018 IPR025218 Domain of unknown function DUF4426 Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 Pfam PF02132 RecR protein 41 78 2.3E-16 T 29-03-2018 IPR023628 Recombination protein RecR, C4-type zinc finger Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 195 2.1E-72 T 29-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 Pfam PF13662 Toprim domain 81 170 9.6E-24 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 29-03-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 101.113 T 29-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 SUPERFAMILY SSF111304 3 197 4.45E-70 T 29-03-2018 IPR023627 Recombination protein RecR Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 SMART SM00493 80 164 1.5E-14 T 29-03-2018 IPR006171 TOPRIM domain Y880_RS04685 13cb6d4b99de632e187177daff6ff097 198 Gene3D G3DSA:3.40.1360.10 77 169 8.2E-33 T 29-03-2018 Y880_RS00790 7c6fefa2c18188a336899cd0d39c8935 342 SUPERFAMILY SSF102114 4 109 3.34E-11 T 29-03-2018 Y880_RS00790 7c6fefa2c18188a336899cd0d39c8935 342 Gene3D G3DSA:3.20.20.70 4 339 2.5E-8 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS12290 1ef84922c660fd95a85b2b6f8cf53cc6 144 Pfam PF07681 DoxX 16 103 1.8E-20 T 29-03-2018 IPR032808 DoxX family Y880_RS06940 019500e9cf06721942d5eea30d772577 175 Pfam PF13521 AAA domain 5 160 9.0E-31 T 29-03-2018 Y880_RS06940 019500e9cf06721942d5eea30d772577 175 Gene3D G3DSA:3.40.50.300 1 165 6.7E-20 T 29-03-2018 Y880_RS06940 019500e9cf06721942d5eea30d772577 175 SUPERFAMILY SSF52540 2 169 2.26E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS18580 0d965ce56285c39e4f569f41d6372676 118 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 115 1.1E-21 T 29-03-2018 IPR007360 Invasion gene expression up-regulator, SirB Y880_RS14820 7a28c329edb76ede37550490455628e2 101 Pfam PF13466 STAS domain 16 94 2.3E-14 T 29-03-2018 IPR002645 STAS domain Y880_RS14820 7a28c329edb76ede37550490455628e2 101 Gene3D G3DSA:3.30.750.24 1 101 3.2E-17 T 29-03-2018 IPR002645 STAS domain Y880_RS14820 7a28c329edb76ede37550490455628e2 101 SUPERFAMILY SSF52091 10 100 1.08E-21 T 29-03-2018 IPR002645 STAS domain Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 Gene3D G3DSA:1.10.10.60 214 266 2.9E-12 T 29-03-2018 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 Pfam PF12833 Helix-turn-helix domain 238 319 3.0E-25 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 Gene3D G3DSA:1.10.10.60 267 319 2.2E-16 T 29-03-2018 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 268 313 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 Pfam PF14525 AraC-binding-like domain 26 199 5.2E-14 T 29-03-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 SUPERFAMILY SSF46689 267 318 7.94E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 SMART SM00342 232 317 1.8E-30 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 SUPERFAMILY SSF46689 216 265 2.42E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 317 9.5E-8 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS18715 2dc50d8bb9ef5819cc4795aab33523dd 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 286 301 9.5E-8 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS29890 c2dc827ea1af9b64869bbb1c3ce2f6c3 612 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 104 168 1.8E-7 T 29-03-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y880_RS29890 c2dc827ea1af9b64869bbb1c3ce2f6c3 612 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 378 452 1.6E-24 T 29-03-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y880_RS29890 c2dc827ea1af9b64869bbb1c3ce2f6c3 612 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 216 289 1.6E-20 T 29-03-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y880_RS03685 e8e681cf614e4f41f1de67f1d9118ddb 126 SUPERFAMILY SSF54285 41 126 5.42E-15 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y880_RS03685 e8e681cf614e4f41f1de67f1d9118ddb 126 Gene3D G3DSA:3.10.20.30 45 126 6.2E-9 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS03685 e8e681cf614e4f41f1de67f1d9118ddb 126 Pfam PF02597 ThiS family 59 126 1.2E-6 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 Y880_RS03165 d81640206a9808a98307df2818038e1b 526 Gene3D G3DSA:3.40.605.10 6 279 1.1E-48 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS03165 d81640206a9808a98307df2818038e1b 526 Gene3D G3DSA:3.40.309.10 280 453 3.1E-23 T 29-03-2018 Y880_RS03165 d81640206a9808a98307df2818038e1b 526 SUPERFAMILY SSF53720 24 516 6.28E-98 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS03165 d81640206a9808a98307df2818038e1b 526 Pfam PF00171 Aldehyde dehydrogenase family 37 456 1.1E-47 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS23670 d3a62f2472c051280b1320054ff671e3 486 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 6 455 3.4E-151 T 29-03-2018 IPR003846 Uncharacterised protein family UPF0061 Y880_RS23670 d3a62f2472c051280b1320054ff671e3 486 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 5 472 46.24 T 29-03-2018 IPR003846 Uncharacterised protein family UPF0061 Y880_RS16790 8120fd8c98738b2bf13b75fb3e1cdd22 230 Gene3D G3DSA:3.30.870.10 6 230 1.0E-25 T 29-03-2018 Y880_RS16790 8120fd8c98738b2bf13b75fb3e1cdd22 230 Pfam PF13091 PLD-like domain 103 224 4.3E-28 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS16790 8120fd8c98738b2bf13b75fb3e1cdd22 230 SUPERFAMILY SSF56024 91 226 4.71E-31 T 29-03-2018 Y880_RS19770 72abe2d0bb1b28627f1bc7c407ffd425 245 PIRSF PIRSF029658 1 245 1.6E-74 T 29-03-2018 IPR016931 Uncharacterised conserved protein UCP029658, TPR Y880_RS19770 72abe2d0bb1b28627f1bc7c407ffd425 245 SUPERFAMILY SSF48452 53 202 2.23E-10 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS19770 72abe2d0bb1b28627f1bc7c407ffd425 245 Gene3D G3DSA:1.25.40.10 43 214 1.1E-16 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 29-03-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 Gene3D G3DSA:3.30.190.20 150 228 7.1E-21 T 29-03-2018 Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 Pfam PF00687 Ribosomal protein L1p/L10e family 34 220 9.1E-49 T 29-03-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.7E-102 T 29-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.014 T 29-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 PIRSF PIRSF002155 1 227 5.2E-75 T 29-03-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 SUPERFAMILY SSF56808 6 225 6.93E-79 T 29-03-2018 IPR023674 Ribosomal protein L1-like Y880_RS19620 0a2ff9556c282ff99118ee66c0bdfec5 231 Gene3D G3DSA:3.40.50.790 68 149 4.2E-32 T 29-03-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Y880_RS21285 b9ad84d52827d35a358509a5698332da 463 SUPERFAMILY SSF56935 21 463 3.11E-84 T 29-03-2018 Y880_RS21285 b9ad84d52827d35a358509a5698332da 463 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 13 463 5.9E-160 T 29-03-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y880_RS21285 b9ad84d52827d35a358509a5698332da 463 Gene3D G3DSA:2.40.160.60 21 463 1.3E-85 T 29-03-2018 Y880_RS29955 4b5237f9907f2f6750c9cc80a66d93f1 278 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 5 265 36.629 T 29-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Y880_RS29955 4b5237f9907f2f6750c9cc80a66d93f1 278 Gene3D G3DSA:3.20.20.70 13 266 4.0E-71 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS29955 4b5237f9907f2f6750c9cc80a66d93f1 278 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 58 76 - T 29-03-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 Y880_RS29955 4b5237f9907f2f6750c9cc80a66d93f1 278 Pfam PF00218 Indole-3-glycerol phosphate synthase 7 263 4.5E-101 T 29-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Y880_RS29955 4b5237f9907f2f6750c9cc80a66d93f1 278 SUPERFAMILY SSF51366 14 265 2.0E-86 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Y880_RS00295 c8ee9337d83cb7695c24ed821169febe 81 Pfam PF06611 Protein of unknown function (DUF1145) 4 58 7.7E-14 T 29-03-2018 IPR009525 Protein of unknown function DUF1145 Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 284 290 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 Pfam PF02384 N-6 DNA Methylase 150 455 3.6E-64 T 29-03-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 SUPERFAMILY SSF53335 3 457 1.3E-100 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 Gene3D G3DSA:3.40.50.150 168 531 8.4E-47 T 29-03-2018 Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 Pfam PF12161 HsdM N-terminal domain 3 136 3.3E-13 T 29-03-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 170 186 5.4E-19 T 29-03-2018 Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 311 335 5.4E-19 T 29-03-2018 Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 281 293 5.4E-19 T 29-03-2018 Y880_RS11125 25448d4f091e575561e938d75fe681b3 592 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 196 210 5.4E-19 T 29-03-2018 Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 PRINTS PR01011 Glutathione peroxidase family signature 121 130 2.0E-19 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 2.0E-19 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 2.0E-19 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 Pfam PF00255 Glutathione peroxidase 4 110 3.9E-38 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 SUPERFAMILY SSF52833 4 159 7.97E-57 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 29-03-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 PIRSF PIRSF000303 1 160 1.9E-60 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y880_RS00940 331d11dac7fddef80b58f05229102e4f 160 Gene3D G3DSA:3.40.30.10 2 160 6.3E-43 T 29-03-2018 Y880_RS12930 1c745eb8e1c5aedfbd64aefdc8290a8f 227 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 3.4E-98 T 29-03-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 Y880_RS12930 1c745eb8e1c5aedfbd64aefdc8290a8f 227 SMART SM00382 35 223 1.8E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS12930 1c745eb8e1c5aedfbd64aefdc8290a8f 227 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS12930 1c745eb8e1c5aedfbd64aefdc8290a8f 227 Gene3D G3DSA:3.40.50.300 2 227 1.7E-65 T 29-03-2018 Y880_RS12930 1c745eb8e1c5aedfbd64aefdc8290a8f 227 Pfam PF00005 ABC transporter 26 174 8.6E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS12930 1c745eb8e1c5aedfbd64aefdc8290a8f 227 SUPERFAMILY SSF52540 6 225 1.73E-69 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS02360 5a5de6416a21d8520298d09170db0fed 109 Pfam PF02049 Flagellar hook-basal body complex protein FliE 23 109 2.7E-32 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y880_RS02360 5a5de6416a21d8520298d09170db0fed 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 73 89 8.2E-20 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y880_RS02360 5a5de6416a21d8520298d09170db0fed 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 94 107 8.2E-20 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y880_RS02360 5a5de6416a21d8520298d09170db0fed 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 38 54 8.2E-20 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y880_RS02360 5a5de6416a21d8520298d09170db0fed 109 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 109 18.915 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y880_RS02360 5a5de6416a21d8520298d09170db0fed 109 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 18 108 1.3E-27 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y880_RS20150 c455af723372b6a485367c75e96d0116 354 Pfam PF09375 Imelysin 36 332 3.2E-57 T 29-03-2018 IPR018976 Peptidase M75, Imelysin Y880_RS08525 2280f09cb51a5375d202edd3d19e5216 402 Pfam PF13579 Glycosyl transferase 4-like domain 16 206 5.4E-25 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 Y880_RS08525 2280f09cb51a5375d202edd3d19e5216 402 Pfam PF13692 Glycosyl transferases group 1 222 359 2.7E-20 T 29-03-2018 Y880_RS08525 2280f09cb51a5375d202edd3d19e5216 402 SUPERFAMILY SSF53756 1 395 8.37E-50 T 29-03-2018 Y880_RS08525 2280f09cb51a5375d202edd3d19e5216 402 Gene3D G3DSA:3.40.50.2000 226 386 1.9E-21 T 29-03-2018 Y880_RS08525 2280f09cb51a5375d202edd3d19e5216 402 Gene3D G3DSA:3.40.50.2000 7 225 2.0E-14 T 29-03-2018 Y880_RS28430 66460cdef4a610f38cd0c7d22add3c15 274 Gene3D G3DSA:1.10.3210.10 1 239 3.2E-40 T 29-03-2018 Y880_RS28430 66460cdef4a610f38cd0c7d22add3c15 274 Pfam PF08668 HDOD domain 2 195 1.8E-54 T 29-03-2018 IPR013976 Metal-dependent hydrolase HDOD Y880_RS28430 66460cdef4a610f38cd0c7d22add3c15 274 SUPERFAMILY SSF109604 1 263 8.07E-64 T 29-03-2018 Y880_RS13380 e20d864c093a9443eca036e3db313fc7 312 SUPERFAMILY SSF53474 7 206 1.88E-20 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS13380 e20d864c093a9443eca036e3db313fc7 312 Gene3D G3DSA:3.40.50.1820 1 243 2.6E-22 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS13380 e20d864c093a9443eca036e3db313fc7 312 Pfam PF12740 Chlorophyllase enzyme 14 141 6.1E-14 T 29-03-2018 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164 Y880_RS11840 4fb312083162a78c6d7b806b582eaaf1 243 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 47 241 5.5E-88 T 29-03-2018 IPR022293 Integrating conjugative element protein, PFL4693 Y880_RS27970 c72efab0b1c0fc4c42c689ac355d724f 145 Pfam PF02627 Carboxymuconolactone decarboxylase family 12 93 6.7E-24 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS27970 c72efab0b1c0fc4c42c689ac355d724f 145 Gene3D G3DSA:1.20.1290.10 1 145 6.7E-44 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS27970 c72efab0b1c0fc4c42c689ac355d724f 145 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 76 9.7E-17 T 29-03-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS27970 c72efab0b1c0fc4c42c689ac355d724f 145 SUPERFAMILY SSF69118 6 145 3.14E-49 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 Pfam PF00701 Dihydrodipicolinate synthetase family 6 290 3.9E-55 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 PIRSF PIRSF001365 1 293 2.7E-87 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 SUPERFAMILY SSF51569 3 292 1.15E-85 T 29-03-2018 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 1.8E-10 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 1.8E-10 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 1.8E-10 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 1.8E-10 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 Gene3D G3DSA:3.20.20.70 3 293 1.2E-84 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS27715 b77e6ce12f0f93adf103ebeccf4c35f2 293 SMART SM01130 4 293 2.1E-99 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 Y880_RS28330 49f0f22881f30d9fd8e06a20036e09ad 159 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS28330 49f0f22881f30d9fd8e06a20036e09ad 159 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.4E-6 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS28330 49f0f22881f30d9fd8e06a20036e09ad 159 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.4E-6 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y880_RS28330 49f0f22881f30d9fd8e06a20036e09ad 159 Pfam PF00293 NUDIX domain 7 146 8.9E-26 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS28330 49f0f22881f30d9fd8e06a20036e09ad 159 SUPERFAMILY SSF55811 4 154 1.76E-29 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS28330 49f0f22881f30d9fd8e06a20036e09ad 159 Gene3D G3DSA:3.90.79.10 1 157 2.6E-30 T 29-03-2018 Y880_RS28330 49f0f22881f30d9fd8e06a20036e09ad 159 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.33 T 29-03-2018 IPR022927 RNA pyrophosphohydrolase RppH Y880_RS27660 dd2d6f4f6c407487a6402422fd07ed94 114 TIGRFAM TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase 2 105 2.7E-35 T 29-03-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 Y880_RS27660 dd2d6f4f6c407487a6402422fd07ed94 114 Pfam PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG 1 106 1.0E-34 T 29-03-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 Y880_RS12805 270c20dc7bbcb7b65cb8f9081ee08670 349 Gene3D G3DSA:3.30.160.60 303 336 4.7E-15 T 29-03-2018 Y880_RS12805 270c20dc7bbcb7b65cb8f9081ee08670 349 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 1 334 32.156 T 29-03-2018 IPR003770 Endolytic murein transglycosylase Y880_RS12805 270c20dc7bbcb7b65cb8f9081ee08670 349 Pfam PF02618 YceG-like family 43 327 3.5E-76 T 29-03-2018 IPR003770 Endolytic murein transglycosylase Y880_RS12805 270c20dc7bbcb7b65cb8f9081ee08670 349 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 1 329 2.8E-81 T 29-03-2018 IPR003770 Endolytic murein transglycosylase Y880_RS12805 270c20dc7bbcb7b65cb8f9081ee08670 349 Gene3D G3DSA:3.30.160.60 79 108 2.9E-8 T 29-03-2018 Y880_RS14735 13a30251f42851b2048a555a0b901fc9 141 Gene3D G3DSA:3.10.450.50 2 141 5.0E-27 T 29-03-2018 Y880_RS14735 13a30251f42851b2048a555a0b901fc9 141 Pfam PF12680 SnoaL-like domain 11 112 6.0E-12 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS14735 13a30251f42851b2048a555a0b901fc9 141 SUPERFAMILY SSF54427 1 129 1.62E-38 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS14735 13a30251f42851b2048a555a0b901fc9 141 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 25 129 2.0E-4 T 29-03-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y880_RS24470 9dd0f07f794d904695c5e3f3ca6a8717 188 Pfam PF00293 NUDIX domain 48 164 1.5E-13 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS24470 9dd0f07f794d904695c5e3f3ca6a8717 188 Gene3D G3DSA:3.90.79.10 5 188 1.5E-31 T 29-03-2018 Y880_RS24470 9dd0f07f794d904695c5e3f3ca6a8717 188 SUPERFAMILY SSF55811 5 179 3.11E-36 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS24470 9dd0f07f794d904695c5e3f3ca6a8717 188 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y880_RS14240 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 159 260 4.5E-29 T 29-03-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Y880_RS14240 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 12 263 27.552 T 29-03-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Y880_RS14240 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Gene3D G3DSA:2.160.20.70 139 263 1.5E-31 T 29-03-2018 Y880_RS14240 56fdd0a9bfda07bfa2d8a5cad43f120e 263 SUPERFAMILY SSF63848 157 262 1.96E-28 T 29-03-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Y880_RS14240 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 7 112 7.7E-30 T 29-03-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 Y880_RS14240 56fdd0a9bfda07bfa2d8a5cad43f120e 263 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 12 263 1.7E-94 T 29-03-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Y880_RS07545 b9cf38713a4c634b5ed12f24669631a4 555 Gene3D G3DSA:3.40.50.300 17 551 6.1E-5 T 29-03-2018 Y880_RS26925 df47223803e820b29cf12aa894cd9424 375 PIRSF PIRSF029285 5 374 1.3E-178 T 29-03-2018 IPR014553 Predicted aminopeptidase Y880_RS26925 df47223803e820b29cf12aa894cd9424 375 Pfam PF10023 Putative aminopeptidase 49 367 2.3E-134 T 29-03-2018 IPR014553 Predicted aminopeptidase Y880_RS26925 df47223803e820b29cf12aa894cd9424 375 Gene3D G3DSA:1.10.390.10 189 356 7.2E-4 T 29-03-2018 Y880_RS05800 f5951071fdc75f4e0ac512ba9da306b9 162 Gene3D G3DSA:2.60.40.1180 38 157 6.7E-4 T 29-03-2018 Y880_RS05800 f5951071fdc75f4e0ac512ba9da306b9 162 SUPERFAMILY SSF81901 49 136 4.45E-5 T 29-03-2018 Y880_RS26985 46f2252454abba2f4ff91aa5b8f64d64 242 SMART SM00332 6 239 4.6E-25 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS26985 46f2252454abba2f4ff91aa5b8f64d64 242 SMART SM00331 15 241 1.1E-27 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS26985 46f2252454abba2f4ff91aa5b8f64d64 242 Pfam PF13672 Protein phosphatase 2C 21 207 1.4E-11 T 29-03-2018 Y880_RS26985 46f2252454abba2f4ff91aa5b8f64d64 242 SUPERFAMILY SSF81606 9 240 2.75E-58 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS26985 46f2252454abba2f4ff91aa5b8f64d64 242 Gene3D G3DSA:3.60.40.10 6 240 2.8E-36 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS11945 55011bdb4ba00ce929bd9236cb7a7984 210 Pfam PF08808 RES domain 28 174 2.1E-20 T 29-03-2018 IPR014914 RES domain Y880_RS11945 55011bdb4ba00ce929bd9236cb7a7984 210 SMART SM00953 28 175 3.6E-12 T 29-03-2018 IPR014914 RES domain Y880_RS13910 d62c6bdc6961cbeee6645913ffec0863 145 Gene3D G3DSA:3.90.79.10 8 142 2.0E-17 T 29-03-2018 Y880_RS13910 d62c6bdc6961cbeee6645913ffec0863 145 SUPERFAMILY SSF55811 3 142 2.84E-20 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS13910 d62c6bdc6961cbeee6645913ffec0863 145 Pfam PF00293 NUDIX domain 17 124 5.9E-12 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS24180 72cc2a6ddd034686cb74b1c8abe5a443 190 Pfam PF13511 Domain of unknown function (DUF4124) 8 57 9.7E-15 T 29-03-2018 IPR025392 Domain of unknown function DUF4124 Y880_RS18640 c04e2068f8aec94a21e56c121a3ad2ff 229 SUPERFAMILY SSF51735 1 229 1.04E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS18640 c04e2068f8aec94a21e56c121a3ad2ff 229 Pfam PF00106 short chain dehydrogenase 3 190 9.2E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18640 c04e2068f8aec94a21e56c121a3ad2ff 229 Gene3D G3DSA:3.40.50.720 159 229 1.0E-9 T 29-03-2018 Y880_RS18640 c04e2068f8aec94a21e56c121a3ad2ff 229 Gene3D G3DSA:3.40.50.720 2 158 6.0E-31 T 29-03-2018 Y880_RS18640 c04e2068f8aec94a21e56c121a3ad2ff 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 8.8E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18640 c04e2068f8aec94a21e56c121a3ad2ff 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 8.8E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS18640 c04e2068f8aec94a21e56c121a3ad2ff 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 8.8E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 Pfam PF00462 Glutaredoxin 4 63 7.8E-22 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 Gene3D G3DSA:3.40.30.10 1 84 4.6E-30 T 29-03-2018 Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 29-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 2.0E-35 T 29-03-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 PRINTS PR00160 Glutaredoxin signature 46 59 1.2E-15 T 29-03-2018 IPR014025 Glutaredoxin subgroup Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 PRINTS PR00160 Glutaredoxin signature 4 22 1.2E-15 T 29-03-2018 IPR014025 Glutaredoxin subgroup Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 PRINTS PR00160 Glutaredoxin signature 60 73 1.2E-15 T 29-03-2018 IPR014025 Glutaredoxin subgroup Y880_RS24215 c4a55980bb84ae5ee46d0e5927b71929 84 SUPERFAMILY SSF52833 1 83 1.2E-29 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 Pfam PF01578 Cytochrome C assembly protein 15 186 6.3E-26 T 29-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 64 84 4.7E-59 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 102 122 4.7E-59 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 47 64 4.7E-59 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 158 184 4.7E-59 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 206 230 4.7E-59 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 123 143 4.7E-59 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS04355 eeb96d3f356537d13c0c0e1e57cdaab9 252 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 47 230 2.1E-84 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y880_RS11845 a2ec39cc606b9b2031753fae4a729205 199 SUPERFAMILY SSF53955 41 82 5.0E-13 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS11845 a2ec39cc606b9b2031753fae4a729205 199 SUPERFAMILY SSF53955 110 183 5.0E-13 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS11845 a2ec39cc606b9b2031753fae4a729205 199 Gene3D G3DSA:1.10.530.10 29 186 5.1E-13 T 29-03-2018 Y880_RS28560 8ce9195bac449c10ce8b77f07b47470e 265 Pfam PF05690 Thiazole biosynthesis protein ThiG 13 259 2.0E-113 T 29-03-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Y880_RS28560 8ce9195bac449c10ce8b77f07b47470e 265 Gene3D G3DSA:3.20.20.70 8 265 1.4E-47 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS28560 8ce9195bac449c10ce8b77f07b47470e 265 SUPERFAMILY SSF110399 10 251 6.28E-92 T 29-03-2018 Y880_RS28560 8ce9195bac449c10ce8b77f07b47470e 265 Hamap MF_00443 Thiazole synthase [thiG]. 10 265 42.991 T 29-03-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 271 282 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 347 358 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 137 153 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 289 316 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 91 102 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 338 347 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 190 212 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 154 169 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 PRINTS PR00359 B-class P450 signature 317 332 5.7E-51 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 SUPERFAMILY SSF48264 27 397 1.7E-91 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 Gene3D G3DSA:1.10.630.10 15 400 2.3E-68 T 29-03-2018 Y880_RS14730 ec972bf248b47205c578d4784c2f7496 418 Pfam PF00067 Cytochrome P450 267 368 1.1E-13 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS15440 71a0d515a7a7a786acaef6853b1bdf72 441 Gene3D G3DSA:1.10.575.10 14 414 3.2E-29 T 29-03-2018 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 Y880_RS15440 71a0d515a7a7a786acaef6853b1bdf72 441 SUPERFAMILY SSF48537 147 366 1.06E-38 T 29-03-2018 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 Y880_RS04090 b0581fee97fbeeff6177a8fa3e2cfb7d 203 Pfam PF03942 DTW domain 5 182 1.4E-48 T 29-03-2018 IPR005636 DTW Y880_RS04090 b0581fee97fbeeff6177a8fa3e2cfb7d 203 SMART SM01144 2 187 1.1E-65 T 29-03-2018 IPR005636 DTW Y880_RS23915 1c487ba5084526922d05365b66a4759c 235 SUPERFAMILY SSF75217 72 234 6.28E-35 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases Y880_RS23915 1c487ba5084526922d05365b66a4759c 235 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 17 232 1.4E-21 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS23915 1c487ba5084526922d05365b66a4759c 235 Pfam PF04452 RNA methyltransferase 19 234 8.2E-42 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS23915 1c487ba5084526922d05365b66a4759c 235 Gene3D G3DSA:3.40.1280.10 1 234 7.2E-54 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y880_RS23915 1c487ba5084526922d05365b66a4759c 235 PIRSF PIRSF015601 2 235 4.5E-46 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20855 499044599a21ec37ff4ea02fb31f5426 309 SMART SM00797 25 307 2.0E-121 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y880_RS20855 499044599a21ec37ff4ea02fb31f5426 309 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 4 294 1.4E-73 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y880_RS20855 499044599a21ec37ff4ea02fb31f5426 309 SUPERFAMILY SSF50891 184 293 1.48E-8 T 29-03-2018 IPR029000 Cyclophilin-like domain Y880_RS20855 499044599a21ec37ff4ea02fb31f5426 309 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 289 1.1E-77 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y880_RS05915 4b572ebd887d4e43507177d405708550 327 Gene3D G3DSA:3.30.470.20 144 286 3.0E-17 T 29-03-2018 Y880_RS05915 4b572ebd887d4e43507177d405708550 327 SUPERFAMILY SSF56059 40 201 5.5E-19 T 29-03-2018 Y880_RS05915 4b572ebd887d4e43507177d405708550 327 SUPERFAMILY SSF56059 231 279 5.5E-19 T 29-03-2018 Y880_RS05915 4b572ebd887d4e43507177d405708550 327 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 4 323 6.8E-170 T 29-03-2018 IPR011758 Alpha-L-glutamate ligase-related protein Y880_RS05915 4b572ebd887d4e43507177d405708550 327 Gene3D G3DSA:3.30.1490.20 40 143 6.6E-7 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Y880_RS05915 4b572ebd887d4e43507177d405708550 327 Pfam PF14397 Sugar-transfer associated ATP-grasp 20 293 3.3E-103 T 29-03-2018 Y880_RS08675 9a10de022bdb5d510768ff026a601524 298 Gene3D G3DSA:1.10.10.10 7 94 8.6E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08675 9a10de022bdb5d510768ff026a601524 298 Pfam PF03466 LysR substrate binding domain 99 293 1.0E-28 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS08675 9a10de022bdb5d510768ff026a601524 298 Gene3D G3DSA:3.40.190.10 184 251 9.1E-8 T 29-03-2018 Y880_RS08675 9a10de022bdb5d510768ff026a601524 298 SUPERFAMILY SSF53850 100 293 7.06E-27 T 29-03-2018 Y880_RS08675 9a10de022bdb5d510768ff026a601524 298 SUPERFAMILY SSF46785 10 122 4.08E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS08675 9a10de022bdb5d510768ff026a601524 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 65 2.7E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS08675 9a10de022bdb5d510768ff026a601524 298 Gene3D G3DSA:3.40.190.10 99 183 2.4E-14 T 29-03-2018 Y880_RS23070 11611269a66d2ea2454cdcafcd7dd9ee 425 Gene3D G3DSA:1.10.3470.10 104 407 1.9E-43 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS23070 11611269a66d2ea2454cdcafcd7dd9ee 425 Pfam PF02653 Branched-chain amino acid transport system / permease component 117 402 1.6E-46 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS23070 11611269a66d2ea2454cdcafcd7dd9ee 425 Pfam PF11862 Domain of unknown function (DUF3382) 13 109 5.4E-20 T 29-03-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal Y880_RS29760 1181430245fa3999941039a8f3e6a9d6 104 ProDom PD069311 TRANSCRIPTIONAL ACTIVATOR PRTN TRANSCRIPTION PYOCIN BIOSYNTHESIS DNA-BINDING BACTERIOCIN REGULATOR REGULATOR 12 83 1.0E-37 T 29-03-2018 IPR020518 Transcription regulator PrtN GO:0006355 Y880_RS29760 1181430245fa3999941039a8f3e6a9d6 104 Pfam PF11112 Pyocin activator protein PrtN 16 89 5.5E-29 T 29-03-2018 IPR020518 Transcription regulator PrtN GO:0006355 Y880_RS02940 63af4e17d56fa16deec0767b5727580c 211 SUPERFAMILY SSF53474 145 206 2.22E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS02940 63af4e17d56fa16deec0767b5727580c 211 SUPERFAMILY SSF53474 36 89 2.22E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS02940 63af4e17d56fa16deec0767b5727580c 211 Gene3D G3DSA:3.40.50.1820 6 209 1.1E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS02940 63af4e17d56fa16deec0767b5727580c 211 Pfam PF12697 Alpha/beta hydrolase family 24 203 7.2E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS24590 e9ff024709ad6366737421405f17ac27 307 SUPERFAMILY SSF52317 14 143 1.37E-37 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS24590 e9ff024709ad6366737421405f17ac27 307 Gene3D G3DSA:3.40.50.10740 1 170 6.6E-44 T 29-03-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain Y880_RS24590 e9ff024709ad6366737421405f17ac27 307 Gene3D G3DSA:3.50.30.60 171 307 3.3E-30 T 29-03-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain Y880_RS24590 e9ff024709ad6366737421405f17ac27 307 Pfam PF02016 LD-carboxypeptidase 18 299 2.5E-61 T 29-03-2018 IPR003507 Peptidase family S66 Y880_RS24590 e9ff024709ad6366737421405f17ac27 307 SUPERFAMILY SSF141986 157 304 9.42E-33 T 29-03-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain Y880_RS24590 e9ff024709ad6366737421405f17ac27 307 PIRSF PIRSF028757 13 307 4.1E-87 T 29-03-2018 IPR003507 Peptidase family S66 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 Gene3D G3DSA:3.40.50.1000 89 236 1.8E-36 T 29-03-2018 IPR023214 HAD-like domain Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 16 227 5.5E-68 T 29-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 114 194 7.4E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 199 2.1E-35 T 29-03-2018 IPR023214 HAD-like domain Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 Gene3D G3DSA:1.10.150.240 28 88 1.9E-21 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 13 230 37.939 T 29-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 113 126 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 13 24 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 162 182 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 SUPERFAMILY SSF56784 13 226 1.06E-59 T 29-03-2018 IPR023214 HAD-like domain Y880_RS29750 2e305303c2a1be34a60be601e9426456 272 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 197 2.2E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Y880_RS15760 4753120b7a07a97bcafd8db12c3c6536 200 SUPERFAMILY SSF52833 3 194 1.25E-66 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS15760 4753120b7a07a97bcafd8db12c3c6536 200 PIRSF PIRSF000239 1 199 3.0E-59 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS15760 4753120b7a07a97bcafd8db12c3c6536 200 Gene3D G3DSA:3.40.30.10 4 161 1.2E-38 T 29-03-2018 Y880_RS15760 4753120b7a07a97bcafd8db12c3c6536 200 Pfam PF00578 AhpC/TSA family 5 139 4.0E-33 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS15760 4753120b7a07a97bcafd8db12c3c6536 200 Gene3D G3DSA:3.30.1020.10 162 199 7.9E-18 T 29-03-2018 Y880_RS15760 4753120b7a07a97bcafd8db12c3c6536 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 193 2.9E-14 T 29-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y880_RS17710 09b778f9f40d90b041cd8c9e69463b1e 300 Pfam PF00892 EamA-like transporter family 150 285 1.9E-14 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS17710 09b778f9f40d90b041cd8c9e69463b1e 300 Pfam PF00892 EamA-like transporter family 5 134 1.9E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS17710 09b778f9f40d90b041cd8c9e69463b1e 300 SUPERFAMILY SSF103481 35 137 3.47E-13 T 29-03-2018 Y880_RS17710 09b778f9f40d90b041cd8c9e69463b1e 300 SUPERFAMILY SSF103481 184 288 4.97E-11 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 Gene3D G3DSA:3.50.50.60 138 351 5.0E-32 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 1.8E-7 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 1.8E-7 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.8E-7 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 SUPERFAMILY SSF51905 2 319 3.27E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 341 4.6E-60 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.9E-14 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 1.9E-14 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 1.9E-14 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 112 130 1.9E-14 T 29-03-2018 Y880_RS21005 64c39aa789a2b1fabd490b42d46bafd2 435 Gene3D G3DSA:3.40.50.720 2 137 3.5E-12 T 29-03-2018 Y880_RS15375 1d547283b34c3679409c5dc14ac1fb63 523 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 23 514 54.939 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y880_RS15375 1d547283b34c3679409c5dc14ac1fb63 523 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 27 511 8.5E-218 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y880_RS15375 1d547283b34c3679409c5dc14ac1fb63 523 Gene3D G3DSA:3.50.50.60 19 465 5.1E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS15375 1d547283b34c3679409c5dc14ac1fb63 523 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 27 514 1.3E-242 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y880_RS15375 1d547283b34c3679409c5dc14ac1fb63 523 SUPERFAMILY SSF51905 24 354 6.48E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS12555 7396aea5c4d9111bbb8299c3e38b853c 197 Pfam PF01810 LysE type translocator 13 191 8.5E-19 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS06790 21dcecb93ff72b9dd1db70ed9e426689 108 Pfam PF09919 Uncharacterized conserved protein (DUF2149) 14 101 2.9E-26 T 29-03-2018 IPR018676 Protein of unknown function DUF2149 Y880_RS02470 196afbc83f044f0fa8372dd10ac471db 168 Gene3D G3DSA:3.30.1330.60 30 168 1.0E-34 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS02470 196afbc83f044f0fa8372dd10ac471db 168 PRINTS PR01021 OMPA domain signature 95 110 1.4E-11 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS02470 196afbc83f044f0fa8372dd10ac471db 168 PRINTS PR01021 OMPA domain signature 65 87 1.4E-11 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS02470 196afbc83f044f0fa8372dd10ac471db 168 PRINTS PR01021 OMPA domain signature 110 126 1.4E-11 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS02470 196afbc83f044f0fa8372dd10ac471db 168 Pfam PF00691 OmpA family 65 159 1.9E-20 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS02470 196afbc83f044f0fa8372dd10ac471db 168 SUPERFAMILY SSF103088 52 165 3.14E-33 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS01655 837454363ec04cbb9713d3f1c6e376c8 231 Pfam PF01618 MotA/TolQ/ExbB proton channel family 82 210 4.3E-44 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Y880_RS01655 837454363ec04cbb9713d3f1c6e376c8 231 TIGRFAM TIGR02796 tolQ: protein TolQ 10 224 5.0E-91 T 29-03-2018 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 Y880_RS02245 93c97c319e6c3aafac2233c1c42f7500 378 SUPERFAMILY SSF53383 5 369 1.04E-98 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS02245 93c97c319e6c3aafac2233c1c42f7500 378 Gene3D G3DSA:3.90.1150.10 237 378 2.0E-32 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS02245 93c97c319e6c3aafac2233c1c42f7500 378 Gene3D G3DSA:3.40.640.10 16 236 6.8E-40 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS02245 93c97c319e6c3aafac2233c1c42f7500 378 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 364 6.3E-100 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Y880_RS02245 93c97c319e6c3aafac2233c1c42f7500 378 PIRSF PIRSF000390 1 372 7.4E-103 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Y880_RS10045 07cbd2c2336f34459f28b5efee841085 311 Pfam PF01148 Cytidylyltransferase family 43 307 1.0E-69 T 29-03-2018 Y880_RS28855 6f69292a06de9c776097f5c0fb9c8bd4 423 Gene3D G3DSA:3.20.20.140 61 359 1.2E-46 T 29-03-2018 Y880_RS28855 6f69292a06de9c776097f5c0fb9c8bd4 423 SUPERFAMILY SSF51338 361 406 2.02E-5 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28855 6f69292a06de9c776097f5c0fb9c8bd4 423 SUPERFAMILY SSF51338 17 51 2.02E-5 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28855 6f69292a06de9c776097f5c0fb9c8bd4 423 Pfam PF07969 Amidohydrolase family 42 398 1.4E-51 T 29-03-2018 IPR013108 Amidohydrolase 3 Y880_RS28855 6f69292a06de9c776097f5c0fb9c8bd4 423 Gene3D G3DSA:2.30.40.10 8 60 2.6E-7 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28855 6f69292a06de9c776097f5c0fb9c8bd4 423 SUPERFAMILY SSF51556 51 370 3.84E-104 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 2.3E-130 T 29-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 4.3E-63 T 29-03-2018 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 PIRSF PIRSF000116 201 332 1.5E-14 T 29-03-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 PIRSF PIRSF000116 2 203 9.1E-45 T 29-03-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 SUPERFAMILY SSF51735 1 182 6.95E-75 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 SUPERFAMILY SSF48179 183 332 1.55E-69 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 3.4E-75 T 29-03-2018 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.862 T 29-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y880_RS21945 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Gene3D G3DSA:1.10.1040.10 60 330 5.1E-114 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS09160 c3048d1e4c23361065f2238061550b71 366 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 20 334 2.4E-32 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 Y880_RS09160 c3048d1e4c23361065f2238061550b71 366 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 7 364 1.7E-66 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 Y880_RS08065 32348676a252f37091a5b012355f9ed3 365 Pfam PF11379 Protein of unknown function (DUF3182) 10 360 1.5E-140 T 29-03-2018 IPR021519 Protein of unknown function DUF3182 Y880_RS08065 32348676a252f37091a5b012355f9ed3 365 SUPERFAMILY SSF56059 122 225 1.12E-5 T 29-03-2018 Y880_RS08065 32348676a252f37091a5b012355f9ed3 365 Gene3D G3DSA:3.30.470.20 111 283 3.2E-4 T 29-03-2018 Y880_RS05845 80575ee234200efaddd5d024b43d1167 165 Pfam PF00582 Universal stress protein family 1 156 4.9E-26 T 29-03-2018 IPR006016 UspA GO:0006950 Y880_RS05845 80575ee234200efaddd5d024b43d1167 165 Gene3D G3DSA:3.40.50.620 1 164 4.2E-26 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS05845 80575ee234200efaddd5d024b43d1167 165 PRINTS PR01438 Universal stress protein signature 134 156 7.1E-5 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS05845 80575ee234200efaddd5d024b43d1167 165 PRINTS PR01438 Universal stress protein signature 2 20 7.1E-5 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS05845 80575ee234200efaddd5d024b43d1167 165 PRINTS PR01438 Universal stress protein signature 116 128 7.1E-5 T 29-03-2018 IPR006015 Universal stress protein A Y880_RS05845 80575ee234200efaddd5d024b43d1167 165 SUPERFAMILY SSF52402 1 156 2.93E-26 T 29-03-2018 Y880_RS27330 26f08df0165beea40f8cfe7c30a1caf7 449 Gene3D G3DSA:2.30.40.10 355 434 5.0E-4 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS27330 26f08df0165beea40f8cfe7c30a1caf7 449 Pfam PF01979 Amidohydrolase family 55 418 2.3E-60 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS27330 26f08df0165beea40f8cfe7c30a1caf7 449 Gene3D G3DSA:2.30.40.10 1 68 2.9E-14 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS27330 26f08df0165beea40f8cfe7c30a1caf7 449 SUPERFAMILY SSF51338 373 446 6.01E-20 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS27330 26f08df0165beea40f8cfe7c30a1caf7 449 SUPERFAMILY SSF51338 4 58 6.01E-20 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS27330 26f08df0165beea40f8cfe7c30a1caf7 449 SUPERFAMILY SSF51556 58 372 4.31E-100 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS27330 26f08df0165beea40f8cfe7c30a1caf7 449 Gene3D G3DSA:3.20.20.140 69 354 1.5E-59 T 29-03-2018 Y880_RS00145 e49286ba4bad9e28d340e405e62356ce 568 Gene3D G3DSA:2.40.160.10 99 568 2.1E-45 T 29-03-2018 Y880_RS00145 e49286ba4bad9e28d340e405e62356ce 568 SUPERFAMILY SSF56935 409 568 3.48E-12 T 29-03-2018 Y880_RS00145 e49286ba4bad9e28d340e405e62356ce 568 SUPERFAMILY SSF56935 128 150 3.48E-12 T 29-03-2018 Y880_RS00145 e49286ba4bad9e28d340e405e62356ce 568 SUPERFAMILY SSF56935 187 361 3.48E-12 T 29-03-2018 Y880_RS00145 e49286ba4bad9e28d340e405e62356ce 568 Pfam PF16930 Putative porin 32 568 2.5E-226 T 29-03-2018 IPR032638 Putative bacterial porin Y880_RS07385 6df819a3b9d7bec6e6aef6fb8ff95b27 64 Gene3D G3DSA:3.10.180.10 13 61 1.3E-4 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS16980 44ed59956b24cc974c417f8519c37ce3 92 Pfam PF09360 Iron-binding zinc finger CDGSH type 55 76 2.1E-9 T 29-03-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 653 730 2.1E-13 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 437 533 6.2E-28 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Gene3D G3DSA:3.30.310.50 649 741 5.8E-19 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 513 528 5.7E-25 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 450 469 5.7E-25 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 379 393 5.7E-25 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 484 497 5.7E-25 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Gene3D G3DSA:3.40.120.10 279 432 6.5E-38 T 29-03-2018 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 SUPERFAMILY SSF53738 434 535 7.85E-33 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 538 642 4.7E-21 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Gene3D G3DSA:3.40.120.10 433 540 6.4E-36 T 29-03-2018 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Gene3D G3DSA:3.40.120.10 541 648 2.3E-25 T 29-03-2018 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 SUPERFAMILY SSF55957 648 739 7.32E-26 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 SUPERFAMILY SSF53738 290 430 4.71E-39 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 SUPERFAMILY SSF53738 538 641 5.49E-33 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 291 420 9.3E-37 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS25230 dfb3ce3f5a11c9ccaf835f30c37c7e35 741 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 380 389 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y880_RS29840 365edb70bf8f6e939953297231fbfd85 290 PIRSF PIRSF011237 1 290 4.3E-160 T 29-03-2018 IPR014458 Uncharacterised protein family, phage P2-GpU-fusion Y880_RS29840 365edb70bf8f6e939953297231fbfd85 290 Pfam PF06995 Phage P2 GpU 158 285 8.5E-40 T 29-03-2018 IPR009734 Myoviridae, GpU Y880_RS29840 365edb70bf8f6e939953297231fbfd85 290 Gene3D G3DSA:1.20.1480.30 19 121 5.8E-4 T 29-03-2018 Y880_RS06235 24e90efcf5f3e792efb0eceb1bf32bb2 270 Gene3D G3DSA:1.10.12.10 221 270 8.7E-14 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS06235 24e90efcf5f3e792efb0eceb1bf32bb2 270 SUPERFAMILY SSF52096 3 269 3.61E-78 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS06235 24e90efcf5f3e792efb0eceb1bf32bb2 270 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 270 1.3E-45 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS06235 24e90efcf5f3e792efb0eceb1bf32bb2 270 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 111 131 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Y880_RS06235 24e90efcf5f3e792efb0eceb1bf32bb2 270 Gene3D G3DSA:3.90.226.10 1 220 9.6E-59 T 29-03-2018 Y880_RS27720 edaa640062b6f1aa3f0372185af2d4b6 260 Gene3D G3DSA:3.40.225.10 25 253 5.3E-52 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS27720 edaa640062b6f1aa3f0372185af2d4b6 260 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 211 5.0E-38 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS27720 edaa640062b6f1aa3f0372185af2d4b6 260 SMART SM01007 33 211 2.8E-43 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS27720 edaa640062b6f1aa3f0372185af2d4b6 260 SUPERFAMILY SSF53639 26 243 2.16E-66 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS27905 4913394c9749b92f7dd7d47ff7f21901 85 Pfam PF13560 Helix-turn-helix domain 15 73 4.8E-9 T 29-03-2018 Y880_RS27905 4913394c9749b92f7dd7d47ff7f21901 85 SMART SM00530 16 71 5.4E-4 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS27905 4913394c9749b92f7dd7d47ff7f21901 85 SUPERFAMILY SSF47413 10 73 8.58E-12 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS27905 4913394c9749b92f7dd7d47ff7f21901 85 Gene3D G3DSA:1.10.260.40 1 85 3.5E-13 T 29-03-2018 Y880_RS12855 068160e9a4c382249fddb310843a04db 326 Gene3D G3DSA:3.90.226.10 65 314 1.7E-35 T 29-03-2018 Y880_RS12855 068160e9a4c382249fddb310843a04db 326 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 75 285 1.6E-48 T 29-03-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 Y880_RS12855 068160e9a4c382249fddb310843a04db 326 Pfam PF01343 Peptidase family S49 141 289 2.2E-35 T 29-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Y880_RS12855 068160e9a4c382249fddb310843a04db 326 SUPERFAMILY SSF52096 54 184 4.52E-44 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS12855 068160e9a4c382249fddb310843a04db 326 SUPERFAMILY SSF52096 213 275 4.52E-44 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS02215 2aaaa5346e87c49bf9be3dc3a579885b 261 Pfam PF00460 Flagella basal body rod protein 5 35 9.5E-11 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y880_RS02215 2aaaa5346e87c49bf9be3dc3a579885b 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site Y880_RS02215 2aaaa5346e87c49bf9be3dc3a579885b 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 8.7E-117 T 29-03-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 Y880_RS02215 2aaaa5346e87c49bf9be3dc3a579885b 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 5.3E-32 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Y880_RS02215 2aaaa5346e87c49bf9be3dc3a579885b 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 4.2E-49 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Y880_RS02215 2aaaa5346e87c49bf9be3dc3a579885b 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 257 3.8E-26 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y880_RS02215 2aaaa5346e87c49bf9be3dc3a579885b 261 SUPERFAMILY SSF117143 92 222 2.48E-36 T 29-03-2018 Y880_RS10730 acedc5b193f8760da0e98eb0deaa495b 297 SUPERFAMILY SSF53474 88 232 1.65E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS10730 acedc5b193f8760da0e98eb0deaa495b 297 Gene3D G3DSA:3.40.50.1820 2 274 4.5E-10 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS22370 fe11b9c5bc33728517cd81b534adb863 349 SUPERFAMILY SSF53335 32 308 8.85E-69 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22370 fe11b9c5bc33728517cd81b534adb863 349 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 108 121 - T 29-03-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS22370 fe11b9c5bc33728517cd81b534adb863 349 Pfam PF17284 Spermidine synthase tetramerisation domain 43 84 3.4E-9 T 29-03-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS22370 fe11b9c5bc33728517cd81b534adb863 349 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 32 316 33.21 T 29-03-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS22370 fe11b9c5bc33728517cd81b534adb863 349 Gene3D G3DSA:2.30.140.10 34 84 1.1E-11 T 29-03-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y880_RS22370 fe11b9c5bc33728517cd81b534adb863 349 Pfam PF01564 Spermine/spermidine synthase domain 88 261 1.1E-38 T 29-03-2018 Y880_RS22370 fe11b9c5bc33728517cd81b534adb863 349 Gene3D G3DSA:3.40.50.150 85 317 8.6E-45 T 29-03-2018 Y880_RS27525 65368750271e95af50d9156e18f47e5b 390 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 195 222 1.4E-16 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS27525 65368750271e95af50d9156e18f47e5b 390 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 224 253 1.4E-16 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS27525 65368750271e95af50d9156e18f47e5b 390 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 169 315 5.1E-28 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS27525 65368750271e95af50d9156e18f47e5b 390 SMART SM00283 95 351 3.4E-5 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS27525 65368750271e95af50d9156e18f47e5b 390 SUPERFAMILY SSF58104 102 334 3.53E-37 T 29-03-2018 Y880_RS27525 65368750271e95af50d9156e18f47e5b 390 Gene3D G3DSA:1.10.287.950 138 351 2.0E-34 T 29-03-2018 Y880_RS22500 e5536a46bc9d43a295388672cb06e7ce 266 SUPERFAMILY SSF53335 54 249 3.59E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22500 e5536a46bc9d43a295388672cb06e7ce 266 Pfam PF08241 Methyltransferase domain 63 160 6.6E-15 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS22500 e5536a46bc9d43a295388672cb06e7ce 266 Gene3D G3DSA:3.40.50.150 1 265 6.6E-26 T 29-03-2018 Y880_RS00910 a2f08a9ab69a8b648ca91800100b106b 237 Gene3D G3DSA:3.30.1330.60 78 235 1.0E-43 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS00910 a2f08a9ab69a8b648ca91800100b106b 237 Pfam PF13488 Glycine zipper 48 90 3.3E-8 T 29-03-2018 Y880_RS00910 a2f08a9ab69a8b648ca91800100b106b 237 SUPERFAMILY SSF103088 108 223 6.67E-40 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS00910 a2f08a9ab69a8b648ca91800100b106b 237 PRINTS PR01021 OMPA domain signature 166 182 8.5E-13 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS00910 a2f08a9ab69a8b648ca91800100b106b 237 PRINTS PR01021 OMPA domain signature 121 143 8.5E-13 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS00910 a2f08a9ab69a8b648ca91800100b106b 237 PRINTS PR01021 OMPA domain signature 151 166 8.5E-13 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS00910 a2f08a9ab69a8b648ca91800100b106b 237 Pfam PF00691 OmpA family 120 215 1.5E-23 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS28835 dcd68d8eee4743750cb1ca712b6c67b6 144 Pfam PF11162 Protein of unknown function (DUF2946) 24 143 1.1E-8 T 29-03-2018 IPR021333 Protein of unknown function DUF2946 Y880_RS01560 36ae13252a37c70c66fc5e54487903d2 411 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 11 267 2.6E-74 T 29-03-2018 IPR017039 Virulence factor BrkB Y880_RS01560 36ae13252a37c70c66fc5e54487903d2 411 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 9 292 23.632 T 29-03-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial Y880_RS01560 36ae13252a37c70c66fc5e54487903d2 411 Pfam PF03631 Virulence factor BrkB 22 266 7.7E-59 T 29-03-2018 IPR017039 Virulence factor BrkB Y880_RS03615 60293dc89d75d72e2b25aceb0c580834 248 SUPERFAMILY SSF161098 24 223 7.59E-42 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS03615 60293dc89d75d72e2b25aceb0c580834 248 Gene3D G3DSA:1.10.3720.10 3 239 2.0E-43 T 29-03-2018 Y880_RS03615 60293dc89d75d72e2b25aceb0c580834 248 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 131 1.0E-17 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS03615 60293dc89d75d72e2b25aceb0c580834 248 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 238 6.4E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS21925 9015afa01731781329f050dc4124245f 235 Pfam PF04403 Paraquat-inducible protein A 74 225 4.0E-48 T 29-03-2018 IPR007498 Paraquat-inducible protein A Y880_RS19405 ef030d35c7f1ea1c69a8bee98a5e3ba1 251 Pfam PF00975 Thioesterase domain 18 236 2.9E-60 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y880_RS19405 ef030d35c7f1ea1c69a8bee98a5e3ba1 251 SUPERFAMILY SSF53474 5 237 1.94E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS19405 ef030d35c7f1ea1c69a8bee98a5e3ba1 251 SMART SM00824 Thioesterase 20 236 0.0063 T 29-03-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 Y880_RS19405 ef030d35c7f1ea1c69a8bee98a5e3ba1 251 Gene3D G3DSA:3.40.50.1820 1 242 5.8E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS02090 da1d35e4cf272d78f085bc10d57d0136 89 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 31 82 1.2E-21 T 29-03-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Y880_RS02090 da1d35e4cf272d78f085bc10d57d0136 89 PIRSF PIRSF028784 1 89 2.5E-28 T 29-03-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Y880_RS17075 a59ea68a39d62c6bb56eda506cfb7e4a 260 Pfam PF01925 Sulfite exporter TauE/SafE 25 252 2.7E-29 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y880_RS03385 39eb78c5e7bede4df3dde134ab513b25 91 Pfam PF02583 Metal-sensitive transcriptional repressor 8 86 4.7E-22 T 29-03-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Y880_RS03690 6c2237065d76f5e7404d82905111237e 368 SUPERFAMILY SSF110296 2 353 6.28E-59 T 29-03-2018 Y880_RS03690 6c2237065d76f5e7404d82905111237e 368 Gene3D G3DSA:2.130.10.10 2 368 5.4E-63 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS18490 0ccb61718424d55f29151e92e2f99165 171 Pfam PF04608 Phosphatidylglycerophosphatase A 23 160 1.7E-52 T 29-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 Y880_RS18490 0ccb61718424d55f29151e92e2f99165 171 SUPERFAMILY SSF101307 17 162 3.4E-46 T 29-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 Y880_RS18490 0ccb61718424d55f29151e92e2f99165 171 Gene3D G3DSA:1.10.3760.10 60 163 4.1E-37 T 29-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 Y880_RS18490 0ccb61718424d55f29151e92e2f99165 171 PIRSF PIRSF006162 14 169 3.4E-50 T 29-03-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Y880_RS09280 599447e16fb45f90aa5829367f9f13d5 762 PIRSF PIRSF001227 10 153 6.6E-14 T 29-03-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y880_RS09280 599447e16fb45f90aa5829367f9f13d5 762 PIRSF PIRSF001227 179 759 3.3E-55 T 29-03-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y880_RS09280 599447e16fb45f90aa5829367f9f13d5 762 Gene3D G3DSA:3.60.20.10 217 753 1.3E-107 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS09280 599447e16fb45f90aa5829367f9f13d5 762 SUPERFAMILY SSF56235 33 756 1.8E-184 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS09280 599447e16fb45f90aa5829367f9f13d5 762 Gene3D G3DSA:1.10.439.10 24 192 1.0E-38 T 29-03-2018 IPR023343 Penicillin amidase type, domain1 GO:0016811 Y880_RS09280 599447e16fb45f90aa5829367f9f13d5 762 Pfam PF01804 Penicillin amidase 33 750 1.1E-143 T 29-03-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y880_RS13390 132dc319853087e4bb9fa36c481b13ba 223 Pfam PF00072 Response regulator receiver domain 5 114 3.6E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13390 132dc319853087e4bb9fa36c481b13ba 223 SUPERFAMILY SSF52172 3 180 6.83E-40 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS13390 132dc319853087e4bb9fa36c481b13ba 223 SMART SM00862 146 220 6.7E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS13390 132dc319853087e4bb9fa36c481b13ba 223 SMART SM00448 3 114 3.1E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS13390 132dc319853087e4bb9fa36c481b13ba 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 2.9E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y880_RS13390 132dc319853087e4bb9fa36c481b13ba 223 Gene3D G3DSA:1.10.10.10 124 223 9.3E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS13390 132dc319853087e4bb9fa36c481b13ba 223 Gene3D G3DSA:3.40.50.2300 1 123 9.4E-35 T 29-03-2018 Y880_RS18255 5b3f36438db72939deeb7176e859f324 367 Pfam PF01098 Cell cycle protein 17 362 3.2E-113 T 29-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 Y880_RS18255 5b3f36438db72939deeb7176e859f324 367 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 14 362 8.2E-135 T 29-03-2018 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 Y880_RS18255 5b3f36438db72939deeb7176e859f324 367 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 319 343 - T 29-03-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 Y880_RS13625 19e7cd6c632270b37615ef16d708edfb 212 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 1.3E-89 T 29-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Y880_RS13625 19e7cd6c632270b37615ef16d708edfb 212 SUPERFAMILY SSF52016 1 203 4.12E-63 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS13625 19e7cd6c632270b37615ef16d708edfb 212 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 44.554 T 29-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Y880_RS13625 19e7cd6c632270b37615ef16d708edfb 212 Pfam PF00694 Aconitase C-terminal domain 1 132 2.9E-38 T 29-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Y880_RS13625 19e7cd6c632270b37615ef16d708edfb 212 Gene3D G3DSA:3.20.19.10 1 184 9.1E-50 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Y880_RS00520 6460382dd13b19f1ed9a47eb1f117ebd 687 SUPERFAMILY SSF56935 55 687 1.1E-94 T 29-03-2018 Y880_RS00520 6460382dd13b19f1ed9a47eb1f117ebd 687 Gene3D G3DSA:2.40.170.20 165 687 2.7E-57 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS00520 6460382dd13b19f1ed9a47eb1f117ebd 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 156 4.4E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS00520 6460382dd13b19f1ed9a47eb1f117ebd 687 Pfam PF00593 TonB dependent receptor 208 685 5.6E-43 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS00520 6460382dd13b19f1ed9a47eb1f117ebd 687 Gene3D G3DSA:2.170.130.10 32 160 5.9E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 SUPERFAMILY SSF56235 7 535 1.74E-174 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 357 375 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 114 132 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 237 253 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 285 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 412 427 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 45 70 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 132 151 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 381 399 1.7E-41 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS27445 120eceadefab5d8ea320581a9441f195 538 Pfam PF01019 Gamma-glutamyltranspeptidase 38 532 5.4E-159 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Y880_RS15260 5dc9041925eeac4b97397c39f1ee6f6b 298 PRINTS PR00412 Epoxide hydrolase signature 266 288 1.4E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS15260 5dc9041925eeac4b97397c39f1ee6f6b 298 PRINTS PR00412 Epoxide hydrolase signature 42 60 1.4E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS15260 5dc9041925eeac4b97397c39f1ee6f6b 298 PRINTS PR00412 Epoxide hydrolase signature 107 120 1.4E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y880_RS15260 5dc9041925eeac4b97397c39f1ee6f6b 298 SUPERFAMILY SSF53474 13 288 1.99E-57 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS15260 5dc9041925eeac4b97397c39f1ee6f6b 298 Gene3D G3DSA:3.40.50.1820 11 295 2.4E-39 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS15260 5dc9041925eeac4b97397c39f1ee6f6b 298 Pfam PF12697 Alpha/beta hydrolase family 38 283 6.5E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS09745 14991a32966bf2ecb66c6589be1c905c 291 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 167 246 5.8E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09745 14991a32966bf2ecb66c6589be1c905c 291 Gene3D G3DSA:1.10.760.10 142 249 2.7E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09745 14991a32966bf2ecb66c6589be1c905c 291 Gene3D G3DSA:1.10.760.10 44 141 7.4E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09745 14991a32966bf2ecb66c6589be1c905c 291 SUPERFAMILY SSF46626 157 276 4.07E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09745 14991a32966bf2ecb66c6589be1c905c 291 SUPERFAMILY SSF46626 39 146 7.96E-27 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS09935 9a73252ec0fadac48a46432c52e285a7 162 Gene3D G3DSA:3.10.450.50 4 162 8.7E-30 T 29-03-2018 Y880_RS09935 9a73252ec0fadac48a46432c52e285a7 162 Pfam PF00866 Ring hydroxylating beta subunit 14 154 1.7E-47 T 29-03-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 Y880_RS09935 9a73252ec0fadac48a46432c52e285a7 162 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 9 162 1.4E-83 T 29-03-2018 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0016708|GO:0055114 Y880_RS09935 9a73252ec0fadac48a46432c52e285a7 162 SUPERFAMILY SSF54427 5 161 1.1E-52 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS03695 e16c6cc9a782aa915b317b0ca7ea7795 158 Pfam PF04073 Aminoacyl-tRNA editing domain 25 139 7.9E-26 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS03695 e16c6cc9a782aa915b317b0ca7ea7795 158 Gene3D G3DSA:3.90.960.10 2 154 6.4E-38 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS03695 e16c6cc9a782aa915b317b0ca7ea7795 158 SUPERFAMILY SSF55826 4 152 8.5E-41 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS12615 1a4ce360fbfcdb89283c0e7f363213bb 443 SUPERFAMILY SSF53474 3 140 2.35E-18 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS12615 1a4ce360fbfcdb89283c0e7f363213bb 443 Gene3D G3DSA:3.40.50.1820 2 385 3.3E-13 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06965 87a2a21986e6080aff1f0789bfa2fc80 202 SUPERFAMILY SSF52218 1 199 8.55E-54 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS06965 87a2a21986e6080aff1f0789bfa2fc80 202 Gene3D G3DSA:3.40.50.360 1 202 2.0E-43 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS06965 87a2a21986e6080aff1f0789bfa2fc80 202 Pfam PF02525 Flavodoxin-like fold 1 196 8.0E-47 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS06965 87a2a21986e6080aff1f0789bfa2fc80 202 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 199 30.781 T 29-03-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 Y880_RS11395 cd64f24a37389cf917c070a70ca53f79 145 Pfam PF12158 Protein of unknown function (DUF3592) 9 133 1.1E-16 T 29-03-2018 IPR021994 Protein of unknown function DUF3592 Y880_RS21920 6681b4301aa2dc8ea84657da9cfa9a68 206 Pfam PF04403 Paraquat-inducible protein A 43 198 5.5E-56 T 29-03-2018 IPR007498 Paraquat-inducible protein A Y880_RS23905 3255ad3f542a61f4332dfb510317209a 141 Pfam PF02416 mttA/Hcf106 family 4 49 4.3E-8 T 29-03-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Y880_RS23905 3255ad3f542a61f4332dfb510317209a 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 8.7E-19 T 29-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 Y880_RS23905 3255ad3f542a61f4332dfb510317209a 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 8.7E-19 T 29-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 Y880_RS23905 3255ad3f542a61f4332dfb510317209a 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 8.7E-19 T 29-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 Y880_RS23905 3255ad3f542a61f4332dfb510317209a 141 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 76 2.8E-24 T 29-03-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Y880_RS23905 3255ad3f542a61f4332dfb510317209a 141 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 116 16.967 T 29-03-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Y880_RS17510 6001a6bf5e85938daa038c837942814a 215 Pfam PF02230 Phospholipase/Carboxylesterase 12 213 1.9E-45 T 29-03-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 Y880_RS17510 6001a6bf5e85938daa038c837942814a 215 SUPERFAMILY SSF53474 9 215 1.21E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS17510 6001a6bf5e85938daa038c837942814a 215 Gene3D G3DSA:3.40.50.1820 5 215 9.4E-35 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS17480 08b92b5e48adcb7ae4ab51cc77799b4a 229 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 124 152 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y880_RS17480 08b92b5e48adcb7ae4ab51cc77799b4a 229 Gene3D G3DSA:2.160.10.10 14 192 1.7E-33 T 29-03-2018 Y880_RS17480 08b92b5e48adcb7ae4ab51cc77799b4a 229 SUPERFAMILY SSF51161 35 192 2.91E-37 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS17480 08b92b5e48adcb7ae4ab51cc77799b4a 229 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 150 5.6E-8 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS08255 bc9ecf404876b976ef114d31ea9d438c 365 PIRSF PIRSF017082 25 365 1.1E-74 T 29-03-2018 IPR005064 Bordetella uptake gene GO:0030288 Y880_RS08255 bc9ecf404876b976ef114d31ea9d438c 365 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 81 360 5.4E-12 T 29-03-2018 IPR005064 Bordetella uptake gene GO:0030288 Y880_RS15910 c48fa0712195a8bef5bec5551a1082cf 137 Pfam PF00893 Small Multidrug Resistance protein 44 112 1.2E-6 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y880_RS15910 c48fa0712195a8bef5bec5551a1082cf 137 SUPERFAMILY SSF103481 37 122 1.31E-11 T 29-03-2018 Y880_RS15910 c48fa0712195a8bef5bec5551a1082cf 137 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 5 125 20.855 T 29-03-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF Y880_RS06565 aacce7d5416151b73860bba0205b1581 132 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 24 121 1.4E-29 T 29-03-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS06565 aacce7d5416151b73860bba0205b1581 132 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 5 122 18.76 T 29-03-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 Y880_RS01995 32156e8acd5679301836b221c1fc1476 165 Gene3D G3DSA:3.40.50.150 13 161 7.5E-5 T 29-03-2018 Y880_RS21480 087cb0ca58126dbc033ccf2b06ff7aa6 568 Pfam PF08479 POTRA domain, ShlB-type 71 146 1.3E-22 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y880_RS21480 087cb0ca58126dbc033ccf2b06ff7aa6 568 Gene3D G3DSA:3.10.20.310 74 146 3.8E-19 T 29-03-2018 Y880_RS21480 087cb0ca58126dbc033ccf2b06ff7aa6 568 Gene3D G3DSA:2.40.160.50 176 568 3.5E-36 T 29-03-2018 Y880_RS21480 087cb0ca58126dbc033ccf2b06ff7aa6 568 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 208 528 1.7E-21 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y880_RS01180 fca00c9f202d44b074e014f0f0cbdd87 400 Gene3D G3DSA:3.40.50.10540 4 400 4.9E-127 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS01180 fca00c9f202d44b074e014f0f0cbdd87 400 Pfam PF02515 CoA-transferase family III 10 376 2.5E-111 T 29-03-2018 IPR003673 CoA-transferase family III GO:0003824 Y880_RS01180 fca00c9f202d44b074e014f0f0cbdd87 400 SUPERFAMILY SSF89796 8 400 8.11E-125 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS18505 bdabc59ef86cebeec4adebf4aa60e3a6 158 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 16 151 8.4E-54 T 29-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18505 bdabc59ef86cebeec4adebf4aa60e3a6 158 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 16 152 1.7E-56 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18505 bdabc59ef86cebeec4adebf4aa60e3a6 158 Gene3D G3DSA:3.40.50.960 3 156 4.7E-62 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18505 bdabc59ef86cebeec4adebf4aa60e3a6 158 SUPERFAMILY SSF52121 5 155 7.2E-61 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS18505 bdabc59ef86cebeec4adebf4aa60e3a6 158 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 10 155 30.962 T 29-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 Gene3D G3DSA:2.60.120.10 7 84 4.4E-7 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 SMART SM00342 164 246 3.7E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 SUPERFAMILY SSF51182 20 212 9.78E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 246 7.4E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 230 7.4E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 Gene3D G3DSA:1.10.10.60 144 203 1.5E-12 T 29-03-2018 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 SUPERFAMILY SSF46689 201 247 3.09E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 Gene3D G3DSA:1.10.10.60 204 252 2.2E-9 T 29-03-2018 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 198 242 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 Pfam PF02311 AraC-like ligand binding domain 18 79 6.4E-7 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS09780 08eb2908aca0587ad472c8a4524935b6 254 Pfam PF12833 Helix-turn-helix domain 170 246 1.1E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS00405 6c7aa6d29e5534c87a5f49c1daf1702f 314 Gene3D G3DSA:3.30.70.1400 14 223 6.3E-24 T 29-03-2018 Y880_RS00405 6c7aa6d29e5534c87a5f49c1daf1702f 314 SUPERFAMILY SSF103025 4 225 1.04E-53 T 29-03-2018 Y880_RS00405 6c7aa6d29e5534c87a5f49c1daf1702f 314 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 171 235 7.3E-26 T 29-03-2018 IPR017703 YgfZ/GcvT conserved site Y880_RS00405 6c7aa6d29e5534c87a5f49c1daf1702f 314 SUPERFAMILY SSF101790 228 307 1.11E-14 T 29-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain Y880_RS29895 2fd2c568f6433c0e0f112a02b43961c4 113 Pfam PF05939 Phage minor tail protein 5 111 7.8E-32 T 29-03-2018 IPR010265 Bacteriophage lambda, GpM, minor tail Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 Gene3D G3DSA:1.10.1660.10 6 64 3.9E-19 T 29-03-2018 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 Pfam PF00376 MerR family regulatory protein 11 47 2.1E-12 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 Pfam PF09278 MerR, DNA binding 52 117 8.1E-16 T 29-03-2018 IPR015358 Transcription regulator MerR, DNA binding Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 SUPERFAMILY SSF46955 10 132 3.0E-28 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 9 149 2.0E-74 T 29-03-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 Gene3D G3DSA:1.10.1660.10 65 140 1.1E-10 T 29-03-2018 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 ProSitePatterns PS00552 MerR-type HTH domain signature. 13 35 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 45 65 2.9E-13 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 11 22 2.9E-13 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 22 35 2.9E-13 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS08705 b07595a8d55f6baf7101ceb045b8bfa1 156 SMART SM00422 10 78 3.8E-28 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS21045 3521e09dcf016e1e1569a3a2ce429c9e 242 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 240 2.7E-59 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase Y880_RS21045 3521e09dcf016e1e1569a3a2ce429c9e 242 Gene3D G3DSA:3.60.140.10 1 242 1.6E-92 T 29-03-2018 Y880_RS21045 3521e09dcf016e1e1569a3a2ce429c9e 242 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 239 5.8E-77 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase Y880_RS21045 3521e09dcf016e1e1569a3a2ce429c9e 242 SUPERFAMILY SSF64438 3 241 2.2E-84 T 29-03-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Y880_RS02920 cbc52373ef167a1a8bce20f84bbce3cf 613 Pfam PF02254 TrkA-N domain 409 520 8.1E-25 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y880_RS02920 cbc52373ef167a1a8bce20f84bbce3cf 613 Gene3D G3DSA:3.40.50.720 398 522 2.9E-23 T 29-03-2018 Y880_RS02920 cbc52373ef167a1a8bce20f84bbce3cf 613 SUPERFAMILY SSF51735 407 543 2.8E-30 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS02920 cbc52373ef167a1a8bce20f84bbce3cf 613 Gene3D G3DSA:1.20.91.10 231 312 6.8E-15 T 29-03-2018 Y880_RS02920 cbc52373ef167a1a8bce20f84bbce3cf 613 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 287 2.3E-85 T 29-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 Y880_RS02920 cbc52373ef167a1a8bce20f84bbce3cf 613 Pfam PF00999 Sodium/hydrogen exchanger family 13 377 3.3E-70 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y880_RS28200 94398c5607dac139baba3951eb548f12 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 22 119 7.5E-31 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS28200 94398c5607dac139baba3951eb548f12 230 SUPERFAMILY SSF161098 22 213 3.4E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28200 94398c5607dac139baba3951eb548f12 230 Gene3D G3DSA:1.10.3720.10 3 229 5.0E-39 T 29-03-2018 Y880_RS28200 94398c5607dac139baba3951eb548f12 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 225 1.9E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS19330 e28fd3765237b6894698957480aeed4b 162 SUPERFAMILY SSF54427 20 149 6.18E-25 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS19330 e28fd3765237b6894698957480aeed4b 162 Pfam PF03284 Phenazine biosynthesis protein A/B 14 162 2.5E-85 T 29-03-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y880_RS19330 e28fd3765237b6894698957480aeed4b 162 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 17 162 6.0E-83 T 29-03-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y880_RS19330 e28fd3765237b6894698957480aeed4b 162 Gene3D G3DSA:3.10.450.50 14 152 1.2E-15 T 29-03-2018 Y880_RS29375 800de3683b86908bf9fb57c3fd03a099 184 Pfam PF07883 Cupin domain 115 183 5.6E-15 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS29375 800de3683b86908bf9fb57c3fd03a099 184 Gene3D G3DSA:1.10.260.40 2 77 1.7E-14 T 29-03-2018 Y880_RS29375 800de3683b86908bf9fb57c3fd03a099 184 SUPERFAMILY SSF51182 55 182 1.89E-25 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS29375 800de3683b86908bf9fb57c3fd03a099 184 SUPERFAMILY SSF47413 8 74 5.07E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS29375 800de3683b86908bf9fb57c3fd03a099 184 Gene3D G3DSA:2.60.120.10 78 184 1.3E-13 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS29375 800de3683b86908bf9fb57c3fd03a099 184 Pfam PF01381 Helix-turn-helix 15 69 1.3E-10 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS29375 800de3683b86908bf9fb57c3fd03a099 184 SMART SM00530 14 69 4.4E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS24670 4c0539e3dd946356988e70ad65d94090 129 SUPERFAMILY SSF51230 3 126 1.44E-40 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS24670 4c0539e3dd946356988e70ad65d94090 129 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y880_RS24670 4c0539e3dd946356988e70ad65d94090 129 Gene3D G3DSA:2.40.50.100 6 129 2.7E-43 T 29-03-2018 Y880_RS24670 4c0539e3dd946356988e70ad65d94090 129 Pfam PF01597 Glycine cleavage H-protein 8 125 1.2E-42 T 29-03-2018 IPR033753 Glycine cleavage system H-protein/Simiate Y880_RS24670 4c0539e3dd946356988e70ad65d94090 129 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 127 5.0E-46 T 29-03-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y880_RS24670 4c0539e3dd946356988e70ad65d94090 129 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 126 39.116 T 29-03-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y880_RS04060 11186501b6ce967fab440f02a65b7c81 463 Pfam PF00474 Sodium:solute symporter family 32 416 6.7E-42 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Y880_RS22085 4c3bdef45e78c333f79f593617762734 390 Pfam PF00155 Aminotransferase class I and II 33 381 2.4E-54 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS22085 4c3bdef45e78c333f79f593617762734 390 Gene3D G3DSA:3.40.640.10 47 291 6.7E-57 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS22085 4c3bdef45e78c333f79f593617762734 390 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 231 244 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y880_RS22085 4c3bdef45e78c333f79f593617762734 390 Gene3D G3DSA:3.90.1150.10 292 388 2.3E-19 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS22085 4c3bdef45e78c333f79f593617762734 390 SUPERFAMILY SSF53383 6 387 1.05E-96 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 437 6.0E-14 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 9.6E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 9.6E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 416 9.6E-9 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 SUPERFAMILY SSF55874 296 436 3.8E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 SUPERFAMILY SSF47384 212 280 4.71E-6 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 Gene3D G3DSA:3.30.565.10 194 437 1.2E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS10705 d39148b196ab805de498a0d0884bf288 445 SMART SM00387 332 438 6.6E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS22825 924bb4d8b33258651bb8a178ea4771e3 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 4.5E-106 T 29-03-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE Y880_RS22825 924bb4d8b33258651bb8a178ea4771e3 232 Gene3D G3DSA:3.40.50.300 1 227 2.2E-56 T 29-03-2018 Y880_RS22825 924bb4d8b33258651bb8a178ea4771e3 232 Pfam PF00005 ABC transporter 17 161 1.7E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS22825 924bb4d8b33258651bb8a178ea4771e3 232 SUPERFAMILY SSF52540 2 221 2.66E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS22825 924bb4d8b33258651bb8a178ea4771e3 232 SMART SM00382 26 211 1.3E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 Gene3D G3DSA:2.60.40.10 150 245 8.3E-13 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 235 4.1E-9 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 PRINTS PR00969 Pili chaperone signature 128 143 4.8E-20 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 PRINTS PR00969 Pili chaperone signature 104 121 4.8E-20 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 PRINTS PR00969 Pili chaperone signature 27 36 4.8E-20 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 PRINTS PR00969 Pili chaperone signature 76 97 4.8E-20 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 Gene3D G3DSA:2.60.40.10 26 147 1.3E-30 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 146 7.9E-35 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 SUPERFAMILY SSF49584 140 235 5.23E-11 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal Y880_RS18660 8a10b095fc614b77afa40c13020ad49d 246 SUPERFAMILY SSF49354 23 146 8.63E-35 T 29-03-2018 IPR008962 PapD-like Y880_RS22580 57d12964cd130070f6c9c17de2de2677 149 Pfam PF04657 Putative inner membrane exporter, YdcZ 8 144 1.1E-40 T 29-03-2018 IPR006750 Putative inner membrane exporter, YdcZ Y880_RS24960 8993de498dfad04ad14320ed6368f580 77 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 1 77 1.6E-44 T 29-03-2018 IPR013468 Conserved hypothetical protein CHP02647 Y880_RS24960 8993de498dfad04ad14320ed6368f580 77 Pfam PF06146 Phosphate-starvation-inducible E 7 71 3.5E-15 T 29-03-2018 IPR020948 Phosphate-starvation-induced PsiE-like Y880_RS10875 94c9df8836eb7ca02306287aa8268236 746 Gene3D G3DSA:2.170.130.10 45 181 2.5E-33 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS10875 94c9df8836eb7ca02306287aa8268236 746 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 55 746 3.1E-102 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS10875 94c9df8836eb7ca02306287aa8268236 746 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 168 2.5E-27 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS10875 94c9df8836eb7ca02306287aa8268236 746 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 729 746 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS10875 94c9df8836eb7ca02306287aa8268236 746 Pfam PF00593 TonB dependent receptor 282 744 8.2E-57 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS10875 94c9df8836eb7ca02306287aa8268236 746 Gene3D G3DSA:2.40.170.20 182 746 1.6E-88 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS10875 94c9df8836eb7ca02306287aa8268236 746 SUPERFAMILY SSF56935 39 746 5.19E-133 T 29-03-2018 Y880_RS05355 29d70e1736f166c3ae3bdee44c8cded6 55 Pfam PF05488 PAAR motif 2 48 9.7E-13 T 29-03-2018 IPR008727 PAAR motif Y880_RS07205 378016d2da75f9b78358bd1c81ed93db 267 Pfam PF01614 Bacterial transcriptional regulator 134 257 2.5E-16 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal Y880_RS07205 378016d2da75f9b78358bd1c81ed93db 267 SUPERFAMILY SSF46785 16 90 9.39E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07205 378016d2da75f9b78358bd1c81ed93db 267 SUPERFAMILY SSF55781 82 261 5.69E-39 T 29-03-2018 IPR029016 GAF domain-like Y880_RS07205 378016d2da75f9b78358bd1c81ed93db 267 Gene3D G3DSA:1.10.10.10 7 85 6.8E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS07205 378016d2da75f9b78358bd1c81ed93db 267 Pfam PF09339 IclR helix-turn-helix domain 18 68 2.6E-13 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS07205 378016d2da75f9b78358bd1c81ed93db 267 SMART SM00346 16 106 6.8E-20 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y880_RS07205 378016d2da75f9b78358bd1c81ed93db 267 Gene3D G3DSA:3.30.450.40 86 266 4.3E-42 T 29-03-2018 IPR029016 GAF domain-like Y880_RS03390 ffbe6f0d3e7628b7c1a7161d98d19ff8 149 PIRSF PIRSF006173 1 149 1.3E-66 T 29-03-2018 IPR008228 Uncharacterised conserved protein UCP006173 Y880_RS03390 ffbe6f0d3e7628b7c1a7161d98d19ff8 149 Pfam PF03692 Putative zinc- or iron-chelating domain 26 93 1.5E-9 T 29-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y880_RS03390 ffbe6f0d3e7628b7c1a7161d98d19ff8 149 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 4 149 42.239 T 29-03-2018 IPR008228 Uncharacterised conserved protein UCP006173 Y880_RS00485 520abb0d10010bd8c089737ab673336b 322 Pfam PF08003 Protein of unknown function (DUF1698) 12 321 3.3E-137 T 29-03-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like Y880_RS00485 520abb0d10010bd8c089737ab673336b 322 Gene3D G3DSA:3.40.50.150 21 322 1.1E-24 T 29-03-2018 Y880_RS00485 520abb0d10010bd8c089737ab673336b 322 SUPERFAMILY SSF53335 91 322 9.07E-32 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS00485 520abb0d10010bd8c089737ab673336b 322 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 13 320 1.4E-137 T 29-03-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 Y880_RS00485 520abb0d10010bd8c089737ab673336b 322 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 15 321 53.019 T 29-03-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 Y880_RS28235 1699e44a26ba6e3a41fae41f9473aec7 116 Pfam PF04076 Bacterial OB fold (BOF) protein 19 113 1.2E-35 T 29-03-2018 IPR005220 Bacterial OB-fold Y880_RS28235 1699e44a26ba6e3a41fae41f9473aec7 116 Gene3D G3DSA:2.40.50.200 15 116 9.6E-26 T 29-03-2018 Y880_RS28235 1699e44a26ba6e3a41fae41f9473aec7 116 SUPERFAMILY SSF101756 12 114 1.7E-29 T 29-03-2018 IPR005220 Bacterial OB-fold Y880_RS17370 b905eda19b1950ffff1d7f59eb319847 142 Gene3D G3DSA:3.40.50.10110 1 140 1.5E-44 T 29-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 Y880_RS17370 b905eda19b1950ffff1d7f59eb319847 142 Pfam PF04364 DNA polymerase III chi subunit, HolC 2 135 6.0E-38 T 29-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 Y880_RS17370 b905eda19b1950ffff1d7f59eb319847 142 SUPERFAMILY SSF102400 2 139 2.48E-42 T 29-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 253 1.9E-54 T 29-03-2018 Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 Gene3D G3DSA:3.40.50.720 1 255 1.4E-63 T 29-03-2018 Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 SUPERFAMILY SSF51735 10 254 9.66E-67 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 7.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 7.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 7.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 7.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 7.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 7.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 2.7E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 2.7E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS02260 b2f7a37c00a177b234d770f9f1273165 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 2.7E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS01095 11ea892646418828f5751d37ba9fc154 127 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 49 115 2.2E-21 T 29-03-2018 IPR018660 C-type lysozyme inhibitor Y880_RS01095 11ea892646418828f5751d37ba9fc154 127 SUPERFAMILY SSF141488 43 117 1.83E-20 T 29-03-2018 IPR018660 C-type lysozyme inhibitor Y880_RS01095 11ea892646418828f5751d37ba9fc154 127 Gene3D G3DSA:3.40.190.10 1 120 0.0011 T 29-03-2018 Y880_RS08310 9038d2ba841fc47fc4e99a3ce97f6cd3 296 Pfam PF02470 MlaD protein 42 131 1.4E-11 T 29-03-2018 IPR003399 Mce/MlaD Y880_RS08310 9038d2ba841fc47fc4e99a3ce97f6cd3 296 Pfam PF02470 MlaD protein 156 221 7.9E-12 T 29-03-2018 IPR003399 Mce/MlaD Y880_RS25715 ec3d34b04bad802d78b32af7efbcf8c1 346 SUPERFAMILY SSF53383 7 341 1.9E-102 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS25715 ec3d34b04bad802d78b32af7efbcf8c1 346 Pfam PF01212 Beta-eliminating lyase 7 297 1.2E-79 T 29-03-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Y880_RS25715 ec3d34b04bad802d78b32af7efbcf8c1 346 Gene3D G3DSA:3.40.640.10 17 250 6.9E-34 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS25715 ec3d34b04bad802d78b32af7efbcf8c1 346 PIRSF PIRSF038940 5 346 6.0E-138 T 29-03-2018 IPR026273 Low specificity L-threonine aldolase GO:0004793|GO:0006567 KEGG: 00260+4.1.2.48 Y880_RS25715 ec3d34b04bad802d78b32af7efbcf8c1 346 Gene3D G3DSA:3.90.1150.10 251 346 9.6E-20 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS12450 372e7dcb9e84ef998026c71323dff460 194 Pfam PF04542 Sigma-70 region 2 32 98 3.4E-16 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS12450 372e7dcb9e84ef998026c71323dff460 194 Gene3D G3DSA:1.10.1740.10 8 101 4.9E-26 T 29-03-2018 Y880_RS12450 372e7dcb9e84ef998026c71323dff460 194 SUPERFAMILY SSF88946 13 115 1.28E-28 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS12450 372e7dcb9e84ef998026c71323dff460 194 Gene3D G3DSA:1.10.10.10 102 191 1.7E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12450 372e7dcb9e84ef998026c71323dff460 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 187 8.6E-28 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS12450 372e7dcb9e84ef998026c71323dff460 194 SUPERFAMILY SSF88659 115 190 1.07E-14 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS12450 372e7dcb9e84ef998026c71323dff460 194 Pfam PF08281 Sigma-70, region 4 132 184 4.7E-11 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS03875 4ae2aa975381845a10fe0fd5a6a31191 518 Gene3D G3DSA:3.90.550.10 22 235 4.5E-9 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS03875 4ae2aa975381845a10fe0fd5a6a31191 518 SUPERFAMILY SSF53448 28 198 3.94E-7 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS03875 4ae2aa975381845a10fe0fd5a6a31191 518 Gene3D G3DSA:3.40.50.300 249 494 3.1E-21 T 29-03-2018 Y880_RS03875 4ae2aa975381845a10fe0fd5a6a31191 518 Pfam PF13469 Sulfotransferase family 260 442 3.5E-14 T 29-03-2018 Y880_RS03875 4ae2aa975381845a10fe0fd5a6a31191 518 SUPERFAMILY SSF52540 352 489 4.89E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03875 4ae2aa975381845a10fe0fd5a6a31191 518 SUPERFAMILY SSF52540 258 316 4.89E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16180 cd81e375f7b752d0b95476db74618325 238 Pfam PF03942 DTW domain 28 214 1.6E-42 T 29-03-2018 IPR005636 DTW Y880_RS16180 cd81e375f7b752d0b95476db74618325 238 SMART SM01144 26 219 4.0E-74 T 29-03-2018 IPR005636 DTW Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 2.6E-50 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 281 294 2.6E-50 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 2.6E-50 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 258 276 2.6E-50 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 92 102 2.6E-50 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 52 68 2.6E-50 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 89 2.6E-50 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 Gene3D G3DSA:3.40.50.2300 23 246 1.5E-53 T 29-03-2018 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 Gene3D G3DSA:3.40.50.2300 260 369 2.5E-13 T 29-03-2018 Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 SUPERFAMILY SSF53822 28 366 4.19E-99 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS02170 d4e78357b8d10ef8c1a35bce2412805e 373 Pfam PF13458 Periplasmic binding protein 29 365 4.4E-66 T 29-03-2018 IPR028081 Leucine-binding protein domain Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 SMART SM00490 262 343 1.8E-31 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 SMART SM00487 24 225 3.4E-54 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Gene3D G3DSA:3.40.50.300 6 225 9.2E-57 T 29-03-2018 Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Pfam PF00271 Helicase conserved C-terminal domain 238 343 1.4E-28 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 SUPERFAMILY SSF52540 78 360 5.48E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Pfam PF00270 DEAD/DEAH box helicase 29 192 2.0E-46 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS15450 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Gene3D G3DSA:3.40.50.300 226 436 2.7E-44 T 29-03-2018 Y880_RS04810 1776b5d56bb0b0baa8c165a2b0241b2b 202 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 3 178 8.2E-86 T 29-03-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y880_RS04810 1776b5d56bb0b0baa8c165a2b0241b2b 202 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 3 179 5.2E-84 T 29-03-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y880_RS04810 1776b5d56bb0b0baa8c165a2b0241b2b 202 SUPERFAMILY SSF46626 15 192 7.07E-31 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04810 1776b5d56bb0b0baa8c165a2b0241b2b 202 Gene3D G3DSA:1.10.760.10 35 202 1.7E-26 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS23335 8a48ecc741c11db0a7fc6b3220bfc63c 512 Pfam PF10144 Bacterial virulence factor haemolysin 30 158 5.6E-8 T 29-03-2018 IPR019305 Uncharacterised protein family Smp Y880_RS23335 8a48ecc741c11db0a7fc6b3220bfc63c 512 Gene3D G3DSA:3.30.70.1230 309 455 8.2E-5 T 29-03-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Y880_RS08980 f45f6f584c4d70c497c9b34e8b99bfd6 254 Gene3D G3DSA:1.10.3720.10 6 252 4.6E-29 T 29-03-2018 Y880_RS08980 f45f6f584c4d70c497c9b34e8b99bfd6 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 246 3.2E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS08980 f45f6f584c4d70c497c9b34e8b99bfd6 254 SUPERFAMILY SSF161098 56 239 1.7E-29 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS09620 73f488fcbf2e77ba6fa6c39626bf0d33 73 Gene3D G3DSA:2.30.30.100 22 72 1.4E-22 T 29-03-2018 Y880_RS09620 73f488fcbf2e77ba6fa6c39626bf0d33 73 SUPERFAMILY SSF50182 22 72 2.62E-14 T 29-03-2018 IPR010920 LSM domain Y880_RS09620 73f488fcbf2e77ba6fa6c39626bf0d33 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 71 8.5E-19 T 29-03-2018 IPR010305 Protein of unknown function DUF903 Y880_RS12125 900f7bff1c76bcfd75df70c047941846 218 Gene3D G3DSA:3.40.50.150 16 218 5.9E-23 T 29-03-2018 Y880_RS12125 900f7bff1c76bcfd75df70c047941846 218 PIRSF PIRSF023956 1 218 9.0E-77 T 29-03-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581 Y880_RS12125 900f7bff1c76bcfd75df70c047941846 218 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 216 3.3E-86 T 29-03-2018 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 Y880_RS12125 900f7bff1c76bcfd75df70c047941846 218 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 217 5.4E-87 T 29-03-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581 Y880_RS12125 900f7bff1c76bcfd75df70c047941846 218 SUPERFAMILY SSF53335 1 216 9.0E-59 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS12125 900f7bff1c76bcfd75df70c047941846 218 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 217 40.204 T 29-03-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 Gene3D G3DSA:1.10.1660.10 1 55 1.3E-21 T 29-03-2018 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 Pfam PF09278 MerR, DNA binding 44 108 2.5E-21 T 29-03-2018 IPR015358 Transcription regulator MerR, DNA binding Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 SMART SM00422 1 70 1.0E-32 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.0E-7 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.0E-7 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.0E-7 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 Pfam PF00376 MerR family regulatory protein 2 39 6.8E-16 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 Gene3D G3DSA:1.10.1660.10 56 130 6.8E-23 T 29-03-2018 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.7E-53 T 29-03-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 Y880_RS22390 b25115bb68686a75a18d18d8467ccf25 132 SUPERFAMILY SSF46955 1 126 5.13E-40 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS16960 ad4f36d5113c5e7ca4e75fadb5ae139a 340 Gene3D G3DSA:3.40.50.10490 194 340 2.7E-33 T 29-03-2018 Y880_RS16960 ad4f36d5113c5e7ca4e75fadb5ae139a 340 SUPERFAMILY SSF53697 5 338 4.7E-66 T 29-03-2018 Y880_RS16960 ad4f36d5113c5e7ca4e75fadb5ae139a 340 Pfam PF01380 SIS domain 198 281 5.7E-16 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS16960 ad4f36d5113c5e7ca4e75fadb5ae139a 340 Pfam PF01380 SIS domain 43 158 7.7E-14 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y880_RS16960 ad4f36d5113c5e7ca4e75fadb5ae139a 340 Gene3D G3DSA:3.40.50.10490 1 170 1.3E-26 T 29-03-2018 Y880_RS10085 3ada54f8ab32824fb5513d89e83ca0f0 237 Gene3D G3DSA:3.40.630.30 31 230 2.5E-23 T 29-03-2018 Y880_RS10085 3ada54f8ab32824fb5513d89e83ca0f0 237 SUPERFAMILY SSF55729 35 226 2.88E-21 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS10085 3ada54f8ab32824fb5513d89e83ca0f0 237 Pfam PF13508 Acetyltransferase (GNAT) domain 157 213 8.6E-9 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS04635 0d8983abde3226b59551f678ff2d599f 378 Gene3D G3DSA:3.40.50.300 1 307 1.3E-14 T 29-03-2018 Y880_RS04635 0d8983abde3226b59551f678ff2d599f 378 Pfam PF13614 AAA domain 6 229 1.8E-10 T 29-03-2018 IPR025669 AAA domain Y880_RS04635 0d8983abde3226b59551f678ff2d599f 378 SUPERFAMILY SSF52540 1 260 4.56E-11 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS29450 f966a2a20baaa60edceb426a5aa61aa0 265 PIRSF PIRSF006241 1 262 4.3E-95 T 29-03-2018 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 Y880_RS29450 f966a2a20baaa60edceb426a5aa61aa0 265 Gene3D G3DSA:3.20.20.150 1 261 4.8E-59 T 29-03-2018 Y880_RS29450 f966a2a20baaa60edceb426a5aa61aa0 265 SUPERFAMILY SSF51658 1 258 4.32E-85 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS29450 f966a2a20baaa60edceb426a5aa61aa0 265 Pfam PF01261 Xylose isomerase-like TIM barrel 21 217 1.5E-34 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y880_RS08820 8db93d7af5a2567ec1898c84775a6dc1 265 SUPERFAMILY SSF161098 61 241 1.31E-29 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS08820 8db93d7af5a2567ec1898c84775a6dc1 265 Gene3D G3DSA:1.10.3720.10 8 259 9.5E-25 T 29-03-2018 Y880_RS08820 8db93d7af5a2567ec1898c84775a6dc1 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 240 5.2E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS15185 c208f37acbf593dd1c4a904e87367633 132 Pfam PF10990 Protein of unknown function (DUF2809) 40 122 5.0E-18 T 29-03-2018 IPR021257 Protein of unknown function DUF2809 Y880_RS14865 56ab417ae43a95f27ef795fa249b8c9c 413 Gene3D G3DSA:3.30.590.10 74 412 3.3E-92 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y880_RS14865 56ab417ae43a95f27ef795fa249b8c9c 413 Pfam PF00120 Glutamine synthetase, catalytic domain 77 407 9.1E-104 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS14865 56ab417ae43a95f27ef795fa249b8c9c 413 SUPERFAMILY SSF54368 28 73 7.98E-5 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS14865 56ab417ae43a95f27ef795fa249b8c9c 413 SUPERFAMILY SSF55931 76 408 4.71E-100 T 29-03-2018 Y880_RS14865 56ab417ae43a95f27ef795fa249b8c9c 413 Gene3D G3DSA:3.10.20.70 10 73 1.8E-5 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS14865 56ab417ae43a95f27ef795fa249b8c9c 413 SMART SM01230 75 331 1.1E-101 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 Gene3D G3DSA:3.40.50.720 2 252 8.4E-68 T 29-03-2018 Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 193 0.005 T 29-03-2018 Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 6.5E-56 T 29-03-2018 Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 SUPERFAMILY SSF51735 9 250 1.05E-72 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.7E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.7E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.7E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.7E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.7E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.7E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.3E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.3E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS06265 d57bfa33bcc40616dfa7a45b856f00ab 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.3E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS20055 1a141869bf5d5eacedc988bfd9c9645a 100 Pfam PF12840 Helix-turn-helix domain 6 78 1.3E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20055 1a141869bf5d5eacedc988bfd9c9645a 100 Gene3D G3DSA:1.10.10.10 14 61 5.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20055 1a141869bf5d5eacedc988bfd9c9645a 100 SUPERFAMILY SSF46785 3 97 1.15E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20055 1a141869bf5d5eacedc988bfd9c9645a 100 Gene3D G3DSA:1.10.10.10 62 96 1.9E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20055 1a141869bf5d5eacedc988bfd9c9645a 100 SMART SM00418 7 98 9.8E-12 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y880_RS00015 dbf37cdd965a0fb571a17424ff6ead5b 471 SUPERFAMILY SSF56672 1 228 3.11E-33 T 29-03-2018 Y880_RS00015 dbf37cdd965a0fb571a17424ff6ead5b 471 Pfam PF00817 impB/mucB/samB family 24 150 4.0E-6 T 29-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y880_RS03210 cbc845201a96f7ed77df6c86d2b0a925 480 Pfam PF07690 Major Facilitator Superfamily 19 420 9.1E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS03210 cbc845201a96f7ed77df6c86d2b0a925 480 SUPERFAMILY SSF103473 8 198 1.18E-39 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS03210 cbc845201a96f7ed77df6c86d2b0a925 480 Gene3D G3DSA:1.20.1250.20 5 207 3.6E-29 T 29-03-2018 Y880_RS03210 cbc845201a96f7ed77df6c86d2b0a925 480 Gene3D G3DSA:1.20.1250.20 265 474 2.8E-18 T 29-03-2018 Y880_RS03210 cbc845201a96f7ed77df6c86d2b0a925 480 SUPERFAMILY SSF103473 213 469 7.19E-25 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS19230 adf57d95fe8816daf0418e43e48dbf5b 334 Gene3D G3DSA:2.60.120.330 1 328 8.1E-91 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS19230 adf57d95fe8816daf0418e43e48dbf5b 334 SUPERFAMILY SSF51197 4 290 1.1E-88 T 29-03-2018 Y880_RS19230 adf57d95fe8816daf0418e43e48dbf5b 334 PRINTS PR00682 Isopenicillin N synthase signature 29 46 5.7E-14 T 29-03-2018 Y880_RS19230 adf57d95fe8816daf0418e43e48dbf5b 334 PRINTS PR00682 Isopenicillin N synthase signature 236 262 5.7E-14 T 29-03-2018 Y880_RS19230 adf57d95fe8816daf0418e43e48dbf5b 334 PRINTS PR00682 Isopenicillin N synthase signature 201 222 5.7E-14 T 29-03-2018 Y880_RS19230 adf57d95fe8816daf0418e43e48dbf5b 334 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 6 129 5.7E-31 T 29-03-2018 IPR026992 Non-haem dioxygenase N-terminal domain Y880_RS19230 adf57d95fe8816daf0418e43e48dbf5b 334 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 181 276 2.5E-23 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS02845 17665b5952033ddb053bb6446723774e 274 Pfam PF01171 PP-loop family 34 197 7.0E-14 T 29-03-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Y880_RS02845 17665b5952033ddb053bb6446723774e 274 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 1 264 58.223 T 29-03-2018 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 Y880_RS02845 17665b5952033ddb053bb6446723774e 274 Gene3D G3DSA:3.40.50.620 3 222 1.9E-39 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS02845 17665b5952033ddb053bb6446723774e 274 SUPERFAMILY SSF52402 10 228 2.07E-56 T 29-03-2018 Y880_RS02845 17665b5952033ddb053bb6446723774e 274 PIRSF PIRSF004976 3 267 2.4E-71 T 29-03-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 Y880_RS13175 42cea93e60aa2673327f952643423742 92 Pfam PF05768 Glutaredoxin-like domain (DUF836) 18 90 2.8E-16 T 29-03-2018 IPR008554 Glutaredoxin-like Y880_RS13175 42cea93e60aa2673327f952643423742 92 SUPERFAMILY SSF52833 7 90 6.24E-13 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS13175 42cea93e60aa2673327f952643423742 92 Gene3D G3DSA:3.40.30.10 18 91 1.8E-7 T 29-03-2018 Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 21 421 6.8E-88 T 29-03-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 Gene3D G3DSA:3.20.20.140 71 386 1.5E-81 T 29-03-2018 Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 SUPERFAMILY SSF51556 56 367 9.21E-88 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 Pfam PF01979 Amidohydrolase family 192 419 1.3E-13 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 SUPERFAMILY SSF51338 367 422 4.32E-24 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 SUPERFAMILY SSF51338 1 55 4.32E-24 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 Hamap MF_00220_B Dihydroorotase [pyrC]. 2 423 32.055 T 29-03-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS28665 e609fd61561a3ab3373465cb014a2cf1 423 Gene3D G3DSA:2.30.40.10 1 70 5.6E-14 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Y880_RS00180 06583cf62a21cbd270a4b657dff8ddbc 305 Pfam PF04116 Fatty acid hydroxylase superfamily 115 248 4.2E-21 T 29-03-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 Hamap MF_00422 Protein translocase subunit SecE [secE]. 61 120 13.282 T 29-03-2018 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 PRINTS PR01650 Bacterial translocase SecE signature 87 107 9.4E-27 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 PRINTS PR01650 Bacterial translocase SecE signature 42 63 9.4E-27 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 PRINTS PR01650 Bacterial translocase SecE signature 63 83 9.4E-27 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 PRINTS PR01650 Bacterial translocase SecE signature 107 122 9.4E-27 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 66 122 2.1E-20 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 Gene3D G3DSA:1.20.5.1030 66 117 8.8E-19 T 29-03-2018 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 120 1.0E-19 T 29-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS19635 3240d2d2708734037cd547b4389ceb8c 122 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 69 97 - T 29-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y880_RS05170 535313838aef87c7a17757de4bbd8fc6 351 Pfam PF01594 AI-2E family transporter 11 338 6.9E-40 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like Y880_RS08480 317b177ca35b036b882eaaffad075727 198 SUPERFAMILY SSF53955 12 158 3.21E-24 T 29-03-2018 IPR023346 Lysozyme-like domain Y880_RS08480 317b177ca35b036b882eaaffad075727 198 Gene3D G3DSA:1.10.530.10 32 193 2.6E-18 T 29-03-2018 Y880_RS29020 cba08a9855f6024a36eeabbd438333c4 206 Pfam PF13410 Glutathione S-transferase, C-terminal domain 130 193 4.4E-7 T 29-03-2018 Y880_RS29020 cba08a9855f6024a36eeabbd438333c4 206 SUPERFAMILY SSF47616 77 205 6.68E-18 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS29020 cba08a9855f6024a36eeabbd438333c4 206 SUPERFAMILY SSF52833 5 108 2.88E-14 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS29020 cba08a9855f6024a36eeabbd438333c4 206 Gene3D G3DSA:1.20.1050.10 97 206 3.7E-13 T 29-03-2018 Y880_RS29020 cba08a9855f6024a36eeabbd438333c4 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 7 86 6.3E-18 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS29020 cba08a9855f6024a36eeabbd438333c4 206 Gene3D G3DSA:3.40.30.10 2 96 1.1E-15 T 29-03-2018 Y880_RS26450 5544f3ecc030436ec298e720a807ce21 293 Gene3D G3DSA:2.60.120.330 55 283 4.3E-21 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS26450 5544f3ecc030436ec298e720a807ce21 293 SUPERFAMILY SSF51197 75 264 6.87E-19 T 29-03-2018 Y880_RS26450 5544f3ecc030436ec298e720a807ce21 293 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 153 236 5.3E-9 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS10970 77caa54ae61f5f9bb92c5f143ff1d134 281 SMART SM00382 25 183 7.9E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS10970 77caa54ae61f5f9bb92c5f143ff1d134 281 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 173 1.1E-13 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS10970 77caa54ae61f5f9bb92c5f143ff1d134 281 SUPERFAMILY SSF52540 8 249 2.29E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS10970 77caa54ae61f5f9bb92c5f143ff1d134 281 Gene3D G3DSA:3.40.50.300 4 213 1.4E-33 T 29-03-2018 Y880_RS06345 2d1e28e2ffeb53c6ac3daecbc0f293e7 165 SUPERFAMILY SSF55826 5 164 2.09E-40 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS06345 2d1e28e2ffeb53c6ac3daecbc0f293e7 165 Pfam PF04073 Aminoacyl-tRNA editing domain 26 152 8.5E-26 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS06345 2d1e28e2ffeb53c6ac3daecbc0f293e7 165 Gene3D G3DSA:3.90.960.10 1 165 1.9E-29 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y880_RS02550 1cbbe503422b7262b0c22f900cf27f5b 137 Pfam PF04134 Protein of unknown function, DUF393 14 122 7.6E-21 T 29-03-2018 IPR007263 Protein of unknown function DUF393 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 29-03-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 Gene3D G3DSA:3.90.79.10 230 354 7.2E-10 T 29-03-2018 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 SUPERFAMILY SSF55811 220 345 5.19E-24 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 Pfam PF14815 NUDIX domain 238 343 8.3E-22 T 29-03-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.8E-8 T 29-03-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 SMART SM00478 39 190 8.4E-50 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 SUPERFAMILY SSF48150 4 224 9.11E-75 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 Gene3D G3DSA:1.10.1670.10 118 225 3.3E-33 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 168 1.1E-20 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 277 5.8E-110 T 29-03-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 Y880_RS24315 d58986750fab8bcb6aa49550ff3e1b6e 355 Gene3D G3DSA:1.10.340.30 21 117 5.3E-33 T 29-03-2018 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 SUPERFAMILY SSF48179 415 498 1.45E-20 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 415 498 1.8E-21 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 189 286 6.3E-32 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 SUPERFAMILY SSF51735 9 188 2.23E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 Gene3D G3DSA:3.40.50.720 8 187 2.6E-47 T 29-03-2018 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 SUPERFAMILY SSF48179 188 294 2.38E-33 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 186 4.7E-58 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 Gene3D G3DSA:1.10.1040.10 412 503 2.1E-18 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS16095 a901e925b1bdbb64030e43e5e10b5f78 510 Gene3D G3DSA:1.10.1040.10 188 291 1.7E-32 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y880_RS18895 ba5da04e561b039d4c8813459d4ca84b 162 PIRSF PIRSF030820 1 162 7.8E-62 T 29-03-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y880_RS18895 ba5da04e561b039d4c8813459d4ca84b 162 Pfam PF06073 Bacterial protein of unknown function (DUF934) 55 159 1.1E-38 T 29-03-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y880_RS03080 4accabbf7900212d26664f0f899a631f 230 Pfam PF02321 Outer membrane efflux protein 63 222 1.6E-19 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS03080 4accabbf7900212d26664f0f899a631f 230 Gene3D G3DSA:1.20.1600.10 19 229 5.6E-28 T 29-03-2018 Y880_RS03080 4accabbf7900212d26664f0f899a631f 230 SUPERFAMILY SSF56954 6 225 4.32E-33 T 29-03-2018 Y880_RS28990 2daf6e8a8f63856b99a217131d6668c0 169 Gene3D G3DSA:2.40.70.10 20 156 2.2E-41 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS28990 2daf6e8a8f63856b99a217131d6668c0 169 Pfam PF05618 Putative ATP-dependant zinc protease 23 166 1.8E-54 T 29-03-2018 Y880_RS28990 2daf6e8a8f63856b99a217131d6668c0 169 SUPERFAMILY SSF50630 22 163 5.62E-40 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS18435 5d10ce16a747f8632dd41310dddab3b6 600 Pfam PF09822 ABC-type uncharacterized transport system 34 291 3.1E-62 T 29-03-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Y880_RS18435 5d10ce16a747f8632dd41310dddab3b6 600 Gene3D G3DSA:3.40.50.880 161 478 4.3E-8 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 SUPERFAMILY SSF50104 2 114 2.61E-45 T 29-03-2018 IPR008991 Translation protein SH3-like domain Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 Pfam PF01245 Ribosomal protein L19 5 114 2.3E-49 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 PRINTS PR00061 Ribosomal protein L19 signature 89 114 6.6E-41 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 PRINTS PR00061 Ribosomal protein L19 signature 35 64 6.6E-41 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 PRINTS PR00061 Ribosomal protein L19 signature 5 34 6.6E-41 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 4 114 3.7E-50 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 3 115 29.92 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 ProSitePatterns PS01015 Ribosomal protein L19 signature. 87 102 - T 29-03-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS16870 f4d4becb78b8492e132fdd007a6696e9 116 PIRSF PIRSF002191 1 116 9.8E-49 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS24100 48d9560c22e92146cd41baf711d5f199 85 Pfam PF04355 SmpA / OmlA family 22 47 6.2E-6 T 29-03-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Y880_RS24100 48d9560c22e92146cd41baf711d5f199 85 Gene3D G3DSA:3.30.1450.10 14 85 7.5E-17 T 29-03-2018 Y880_RS21375 32d330268378b897713161652821c056 688 Pfam PF02554 Carbon starvation protein CstA 35 411 9.5E-169 T 29-03-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 Y880_RS21375 32d330268378b897713161652821c056 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 466 594 1.3E-35 T 29-03-2018 IPR025299 CstA, C-terminal domain Y880_RS07340 8f8bfebddebd361b547886e521c1ec90 173 Pfam PF08241 Methyltransferase domain 80 116 1.8E-4 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS07340 8f8bfebddebd361b547886e521c1ec90 173 SUPERFAMILY SSF53335 23 153 9.6E-11 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS07340 8f8bfebddebd361b547886e521c1ec90 173 Gene3D G3DSA:3.40.50.150 66 173 1.7E-9 T 29-03-2018 Y880_RS12300 365c2effa0aad54e951d84287fc55b81 267 SUPERFAMILY SSF51556 3 263 1.44E-77 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS12300 365c2effa0aad54e951d84287fc55b81 267 Pfam PF01026 TatD related DNase 4 261 4.1E-61 T 29-03-2018 IPR001130 TatD family GO:0016788 Y880_RS12300 365c2effa0aad54e951d84287fc55b81 267 Gene3D G3DSA:3.20.20.140 1 267 1.9E-80 T 29-03-2018 Y880_RS12300 365c2effa0aad54e951d84287fc55b81 267 PIRSF PIRSF005902 1 266 1.1E-63 T 29-03-2018 IPR001130 TatD family GO:0016788 Y880_RS12300 365c2effa0aad54e951d84287fc55b81 267 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 128 138 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y880_RS18720 33151c02a44e932a74d3c3e20c1c5d54 177 Gene3D G3DSA:2.60.120.10 22 176 1.0E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS18720 33151c02a44e932a74d3c3e20c1c5d54 177 SUPERFAMILY SSF51182 36 159 1.39E-22 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS18720 33151c02a44e932a74d3c3e20c1c5d54 177 Pfam PF07883 Cupin domain 75 131 4.2E-7 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 SUPERFAMILY SSF81338 1 225 6.54E-66 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 Pfam PF00230 Major intrinsic protein 2 221 4.7E-46 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 165 187 1.2E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 42 66 1.2E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 2 21 1.2E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 79 98 1.2E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 135 153 1.2E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 204 224 1.2E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 Gene3D G3DSA:1.20.1080.10 1 229 1.4E-69 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 35.103 T 29-03-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 2.1E-57 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS18410 950eb9d20e6f0d18fd2ae4854d4190d0 229 ProSitePatterns PS00221 MIP family signature. 60 68 - T 29-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 Y880_RS09455 071fcf8009f40bc835494ffe257af41d 306 Pfam PF13557 Putative MetA-pathway of phenol degradation 57 302 9.6E-60 T 29-03-2018 IPR025737 MetA-pathway of phenol degradation, putative Y880_RS09455 071fcf8009f40bc835494ffe257af41d 306 Gene3D G3DSA:2.40.160.20 111 258 5.5E-6 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS28440 c039ace661b86d5fddb71443a305b1e3 192 SUPERFAMILY SSF69593 23 164 3.01E-21 T 29-03-2018 Y880_RS28440 c039ace661b86d5fddb71443a305b1e3 192 Pfam PF01553 Acyltransferase 31 146 5.2E-10 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS28440 c039ace661b86d5fddb71443a305b1e3 192 SMART SM00563 38 150 8.8E-20 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS28440 c039ace661b86d5fddb71443a305b1e3 192 Gene3D G3DSA:3.40.1130.10 9 170 6.9E-21 T 29-03-2018 Y880_RS21940 e41b080caf28c9fa1bbb5aca29a54b4b 271 Pfam PF01066 CDP-alcohol phosphatidyltransferase 43 106 5.7E-13 T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y880_RS21940 e41b080caf28c9fa1bbb5aca29a54b4b 271 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 50 210 2.3E-38 T 29-03-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 Y880_RS21940 e41b080caf28c9fa1bbb5aca29a54b4b 271 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 84 106 - T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y880_RS05730 b468b2c1fcbc35611fa137ba02087c79 317 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 314 3.1E-93 T 29-03-2018 IPR007296 Domain of unknown function DUF403 Y880_RS07095 3b1bd08d50918e7e2fe63fbb41433f54 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 10 90 4.8E-36 T 29-03-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 Y880_RS07095 3b1bd08d50918e7e2fe63fbb41433f54 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 26 88 1.2E-15 T 29-03-2018 IPR008792 Coenzyme PQQ synthesis D Y880_RS07095 3b1bd08d50918e7e2fe63fbb41433f54 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 4 91 26.755 T 29-03-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 Y880_RS28285 66190e447736b2eaf8f7dd21cdb57bd8 241 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 132 160 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y880_RS28285 66190e447736b2eaf8f7dd21cdb57bd8 241 Gene3D G3DSA:2.160.10.10 5 202 1.7E-35 T 29-03-2018 Y880_RS28285 66190e447736b2eaf8f7dd21cdb57bd8 241 SUPERFAMILY SSF51161 40 198 4.57E-35 T 29-03-2018 IPR011004 Trimeric LpxA-like Y880_RS28285 66190e447736b2eaf8f7dd21cdb57bd8 241 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 157 1.3E-7 T 29-03-2018 IPR001451 Hexapeptide repeat Y880_RS17840 3748ca3e1a7eb42f10777e4c630a0221 455 Gene3D G3DSA:2.50.20.10 161 451 4.5E-60 T 29-03-2018 Y880_RS17840 3748ca3e1a7eb42f10777e4c630a0221 455 Pfam PF07044 Protein of unknown function (DUF1329) 85 450 2.0E-158 T 29-03-2018 IPR010752 Protein of unknown function DUF1329 Y880_RS24570 419d913f3550d99dcc04e94a788f340e 267 SUPERFAMILY SSF48317 13 228 5.1E-11 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS24570 419d913f3550d99dcc04e94a788f340e 267 Gene3D G3DSA:1.20.144.10 4 237 8.6E-9 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS24570 419d913f3550d99dcc04e94a788f340e 267 Pfam PF01569 PAP2 superfamily 146 225 9.5E-13 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y880_RS05125 bc6c5dedbc995219e05ec67165419f8f 555 Gene3D G3DSA:2.30.38.10 345 421 4.3E-16 T 29-03-2018 Y880_RS05125 bc6c5dedbc995219e05ec67165419f8f 555 Pfam PF00501 AMP-binding enzyme 12 428 2.1E-91 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS05125 bc6c5dedbc995219e05ec67165419f8f 555 Gene3D G3DSA:3.40.50.980 173 344 8.3E-41 T 29-03-2018 Y880_RS05125 bc6c5dedbc995219e05ec67165419f8f 555 Gene3D G3DSA:3.40.50.980 6 172 6.3E-36 T 29-03-2018 Y880_RS05125 bc6c5dedbc995219e05ec67165419f8f 555 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS05125 bc6c5dedbc995219e05ec67165419f8f 555 SUPERFAMILY SSF56801 8 540 5.23E-113 T 29-03-2018 Y880_RS05125 bc6c5dedbc995219e05ec67165419f8f 555 Gene3D G3DSA:3.30.300.30 423 546 3.7E-12 T 29-03-2018 Y880_RS17095 2c2d137345d65c4e9606d952d5907364 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 307 2.4E-81 T 29-03-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Y880_RS04670 05fbf32203f0cd432ffdb1a450ba3cb3 288 SUPERFAMILY SSF53850 68 287 9.12E-21 T 29-03-2018 Y880_RS04670 05fbf32203f0cd432ffdb1a450ba3cb3 288 Gene3D G3DSA:3.40.190.10 65 288 6.5E-10 T 29-03-2018 Y880_RS04670 05fbf32203f0cd432ffdb1a450ba3cb3 288 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 81 287 6.9E-11 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS16935 50f9b45141fe090f1ae54922d3370156 203 SUPERFAMILY SSF55811 10 178 2.84E-32 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS16935 50f9b45141fe090f1ae54922d3370156 203 Pfam PF00293 NUDIX domain 28 136 5.8E-11 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y880_RS16935 50f9b45141fe090f1ae54922d3370156 203 Gene3D G3DSA:3.90.79.10 3 187 2.3E-39 T 29-03-2018 Y880_RS13895 3f93faa637cedce0fba13bbabe7f34a2 307 Gene3D G3DSA:3.30.450.40 24 137 9.9E-4 T 29-03-2018 IPR029016 GAF domain-like Y880_RS13895 3f93faa637cedce0fba13bbabe7f34a2 307 SMART SM00267 136 307 3.8E-58 T 29-03-2018 IPR000160 GGDEF domain Y880_RS13895 3f93faa637cedce0fba13bbabe7f34a2 307 SUPERFAMILY SSF55073 152 305 1.18E-47 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS13895 3f93faa637cedce0fba13bbabe7f34a2 307 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 146 305 7.1E-49 T 29-03-2018 IPR000160 GGDEF domain Y880_RS13895 3f93faa637cedce0fba13bbabe7f34a2 307 Pfam PF00990 Diguanylate cyclase, GGDEF domain 147 303 2.0E-46 T 29-03-2018 IPR000160 GGDEF domain Y880_RS13895 3f93faa637cedce0fba13bbabe7f34a2 307 Gene3D G3DSA:3.30.70.270 140 307 4.5E-54 T 29-03-2018 Y880_RS00850 3c0d304a0806184da46c3ac5776cfd0b 608 SUPERFAMILY SSF52540 1 123 1.42E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00850 3c0d304a0806184da46c3ac5776cfd0b 608 SUPERFAMILY SSF52540 162 397 1.42E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00850 3c0d304a0806184da46c3ac5776cfd0b 608 Gene3D G3DSA:3.40.50.300 1 410 8.1E-27 T 29-03-2018 Y880_RS00850 3c0d304a0806184da46c3ac5776cfd0b 608 Pfam PF13175 AAA ATPase domain 1 375 1.9E-57 T 29-03-2018 Y880_RS09090 a104144d08b81f37f20bf26b38e7cf13 264 Gene3D G3DSA:3.40.190.10 114 211 8.8E-34 T 29-03-2018 Y880_RS09090 a104144d08b81f37f20bf26b38e7cf13 264 SUPERFAMILY SSF53850 26 263 7.88E-65 T 29-03-2018 Y880_RS09090 a104144d08b81f37f20bf26b38e7cf13 264 Gene3D G3DSA:3.40.190.10 23 113 8.4E-14 T 29-03-2018 Y880_RS09090 a104144d08b81f37f20bf26b38e7cf13 264 Pfam PF03180 NLPA lipoprotein 26 263 8.9E-75 T 29-03-2018 IPR004872 Lipoprotein NlpA family Y880_RS06855 7d3d3f0ec38de8b4d4714ed098f86615 379 Pfam PF00199 Catalase 73 324 1.9E-11 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS06855 7d3d3f0ec38de8b4d4714ed098f86615 379 Gene3D G3DSA:2.40.180.10 38 379 1.2E-78 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS06855 7d3d3f0ec38de8b4d4714ed098f86615 379 SUPERFAMILY SSF56634 25 378 2.88E-85 T 29-03-2018 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 SUPERFAMILY SSF51735 4 256 4.91E-74 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.7E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.7E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.7E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 Gene3D G3DSA:3.40.50.720 3 47 3.1E-11 T 29-03-2018 Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 Gene3D G3DSA:3.40.50.720 48 256 8.0E-57 T 29-03-2018 Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 255 3.3E-54 T 29-03-2018 Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.7E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.7E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.7E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.7E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.7E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS15040 109ff5713009dca3c7957cdf41726854 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.7E-34 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04365 76768c6a81cef4d77da2fa049f374904 162 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 141 33.684 T 29-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 Y880_RS04365 76768c6a81cef4d77da2fa049f374904 162 SUPERFAMILY SSF82093 30 137 2.22E-40 T 29-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 Y880_RS04365 76768c6a81cef4d77da2fa049f374904 162 Pfam PF03100 CcmE 5 131 1.3E-47 T 29-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 Y880_RS04365 76768c6a81cef4d77da2fa049f374904 162 Gene3D G3DSA:2.40.50.140 27 125 3.6E-34 T 29-03-2018 Y880_RS22665 c23cccd529e8e8c7ea71f954eab97e01 186 Gene3D G3DSA:1.10.10.60 5 61 1.1E-17 T 29-03-2018 Y880_RS22665 c23cccd529e8e8c7ea71f954eab97e01 186 Gene3D G3DSA:1.10.357.10 62 181 4.4E-18 T 29-03-2018 Y880_RS22665 c23cccd529e8e8c7ea71f954eab97e01 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 1.1E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS22665 c23cccd529e8e8c7ea71f954eab97e01 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 4.0E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS22665 c23cccd529e8e8c7ea71f954eab97e01 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 4.0E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS22665 c23cccd529e8e8c7ea71f954eab97e01 186 SUPERFAMILY SSF46689 1 72 1.49E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS22665 c23cccd529e8e8c7ea71f954eab97e01 186 SUPERFAMILY SSF48498 80 180 8.34E-21 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS09100 ba52fb1dbbe7c2b3c25451193e9bfaf6 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 217 1.1E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS09100 ba52fb1dbbe7c2b3c25451193e9bfaf6 217 Gene3D G3DSA:1.10.3720.10 1 216 2.7E-40 T 29-03-2018 Y880_RS09100 ba52fb1dbbe7c2b3c25451193e9bfaf6 217 SUPERFAMILY SSF161098 7 200 5.23E-46 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS26635 50136cd981925718dc7d6c0bb519cc49 183 SUPERFAMILY SSF48150 1 181 2.2E-75 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y880_RS26635 50136cd981925718dc7d6c0bb519cc49 183 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 3 178 2.0E-88 T 29-03-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 Y880_RS26635 50136cd981925718dc7d6c0bb519cc49 183 Pfam PF03352 Methyladenine glycosylase 6 177 1.1E-70 T 29-03-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Y880_RS26635 50136cd981925718dc7d6c0bb519cc49 183 Gene3D G3DSA:1.10.340.30 1 178 1.8E-74 T 29-03-2018 Y880_RS28515 393e2f7a7807371f0819bdd6e09add81 465 Pfam PF00675 Insulinase (Peptidase family M16) 50 188 8.1E-21 T 29-03-2018 IPR011765 Peptidase M16, N-terminal Y880_RS28515 393e2f7a7807371f0819bdd6e09add81 465 Gene3D G3DSA:3.30.830.10 33 257 8.9E-65 T 29-03-2018 Y880_RS28515 393e2f7a7807371f0819bdd6e09add81 465 Pfam PF05193 Peptidase M16 inactive domain 204 387 3.5E-28 T 29-03-2018 IPR007863 Peptidase M16, C-terminal Y880_RS28515 393e2f7a7807371f0819bdd6e09add81 465 Gene3D G3DSA:3.30.830.10 271 465 4.8E-33 T 29-03-2018 Y880_RS28515 393e2f7a7807371f0819bdd6e09add81 465 SUPERFAMILY SSF63411 264 459 3.83E-34 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y880_RS28515 393e2f7a7807371f0819bdd6e09add81 465 SUPERFAMILY SSF63411 37 254 9.17E-61 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y880_RS06380 c1ae9e400c5ca82f5d8e24fe6312f4da 389 Gene3D G3DSA:1.20.1250.20 195 389 2.3E-21 T 29-03-2018 Y880_RS06380 c1ae9e400c5ca82f5d8e24fe6312f4da 389 SUPERFAMILY SSF103473 5 384 9.02E-34 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS06380 c1ae9e400c5ca82f5d8e24fe6312f4da 389 Pfam PF07690 Major Facilitator Superfamily 252 380 2.1E-12 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS06380 c1ae9e400c5ca82f5d8e24fe6312f4da 389 Pfam PF07690 Major Facilitator Superfamily 11 240 1.1E-9 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS06380 c1ae9e400c5ca82f5d8e24fe6312f4da 389 Gene3D G3DSA:1.20.1250.20 1 194 3.5E-14 T 29-03-2018 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 Pfam PF02974 Protease inhibitor Inh 31 128 2.3E-22 T 29-03-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 38 125 6.0E-35 T 29-03-2018 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 PRINTS PR01274 Metalloprotease inhibitor signature 26 42 5.9E-17 T 29-03-2018 IPR022815 Protease inhibitor I38 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 PRINTS PR01274 Metalloprotease inhibitor signature 68 79 5.9E-17 T 29-03-2018 IPR022815 Protease inhibitor I38 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 PRINTS PR01274 Metalloprotease inhibitor signature 90 103 5.9E-17 T 29-03-2018 IPR022815 Protease inhibitor I38 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 PRINTS PR01274 Metalloprotease inhibitor signature 107 120 5.9E-17 T 29-03-2018 IPR022815 Protease inhibitor I38 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 SUPERFAMILY SSF50882 26 128 3.14E-26 T 29-03-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 Y880_RS03150 e79b838ea0d203dad017608ba7d7a263 131 Gene3D G3DSA:2.40.128.10 32 128 2.1E-26 T 29-03-2018 Y880_RS02425 2b282482eb5d1a0f0e7bb8c022081773 73 Pfam PF09905 DNA-binding protein VF530 6 66 6.4E-34 T 29-03-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 Y880_RS02425 2b282482eb5d1a0f0e7bb8c022081773 73 Gene3D G3DSA:1.10.720.30 12 68 4.2E-31 T 29-03-2018 IPR003034 SAP domain Y880_RS22490 d3ba9f5932055d8b7129f24a0eb05358 242 Pfam PF04229 GrpB protein 22 182 4.8E-49 T 29-03-2018 IPR007344 GrpB/Dephospho-CoA kinase Y880_RS22490 d3ba9f5932055d8b7129f24a0eb05358 242 Gene3D G3DSA:3.30.460.10 17 190 2.4E-51 T 29-03-2018 Y880_RS22490 d3ba9f5932055d8b7129f24a0eb05358 242 SUPERFAMILY SSF81301 24 186 4.25E-46 T 29-03-2018 Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 SUPERFAMILY SSF46689 4 72 1.18E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 Gene3D G3DSA:1.10.357.10 49 212 3.7E-33 T 29-03-2018 Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 3.4E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 3.4E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 SUPERFAMILY SSF48498 82 209 2.0E-39 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 Gene3D G3DSA:1.10.10.60 2 48 1.3E-17 T 29-03-2018 Y880_RS13030 5bf6201dbefb69df1ac44aae4fac3a28 233 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 2.1E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06685 78275a4bd08a5147b3b1b2d91e11f3e3 178 Gene3D G3DSA:3.30.428.10 1 158 2.2E-10 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS06685 78275a4bd08a5147b3b1b2d91e11f3e3 178 SUPERFAMILY SSF54197 3 109 1.83E-15 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS15585 55d11b3a8bb74315ec37aba1ebac66f4 238 PIRSF PIRSF006102 2 220 4.6E-74 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS15585 55d11b3a8bb74315ec37aba1ebac66f4 238 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 8 210 8.2E-88 T 29-03-2018 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 Y880_RS15585 55d11b3a8bb74315ec37aba1ebac66f4 238 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 202 3.6E-62 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS15585 55d11b3a8bb74315ec37aba1ebac66f4 238 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 212 26.741 T 29-03-2018 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 Y880_RS03700 1bede523fe05c5c9b38a1bb138b414ef 132 PIRSF PIRSF500687 1 132 3.2E-64 T 29-03-2018 IPR027259 Predicted 3-demethylubiquinone-9 3-methyltransferase, bacterial Y880_RS03700 1bede523fe05c5c9b38a1bb138b414ef 132 Gene3D G3DSA:3.10.180.10 1 132 1.2E-26 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS03700 1bede523fe05c5c9b38a1bb138b414ef 132 PIRSF PIRSF021700 1 132 3.1E-42 T 29-03-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase Y880_RS03700 1bede523fe05c5c9b38a1bb138b414ef 132 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 129 1.6E-32 T 29-03-2018 IPR028973 PhnB-like Y880_RS03700 1bede523fe05c5c9b38a1bb138b414ef 132 SUPERFAMILY SSF54593 3 130 5.63E-40 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS05070 944f76a46e2c03ebe17d022b28d90fdf 158 Pfam PF12975 Domain of unknown function (DUF3859) 28 157 3.8E-45 T 29-03-2018 IPR024331 Domain of unknown function DUF3859 Y880_RS07840 7ad1c9ba142cfb266c4ce571942644a5 408 Pfam PF11922 Domain of unknown function (DUF3440) 247 348 8.8E-26 T 29-03-2018 IPR021845 Protein of unknown function DUF3440 Y880_RS07840 7ad1c9ba142cfb266c4ce571942644a5 408 SUPERFAMILY SSF52402 5 243 2.37E-39 T 29-03-2018 Y880_RS07840 7ad1c9ba142cfb266c4ce571942644a5 408 Gene3D G3DSA:3.40.50.620 9 243 3.7E-25 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS07840 7ad1c9ba142cfb266c4ce571942644a5 408 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 245 1.2E-14 T 29-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 Y880_RS13195 82f76790d11faebc10502124b11e0c99 288 Pfam PF00753 Metallo-beta-lactamase superfamily 51 272 1.6E-27 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS13195 82f76790d11faebc10502124b11e0c99 288 SUPERFAMILY SSF56281 48 276 7.21E-34 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS13195 82f76790d11faebc10502124b11e0c99 288 SMART SM00849 54 272 1.3E-27 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS13195 82f76790d11faebc10502124b11e0c99 288 Gene3D G3DSA:3.60.15.10 20 283 2.1E-37 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS11460 2e0d87ee35cf35e092ca2d29a2ada22f 72 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 67 2.8E-20 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS11460 2e0d87ee35cf35e092ca2d29a2ada22f 72 SUPERFAMILY SSF47413 2 69 9.01E-15 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS11460 2e0d87ee35cf35e092ca2d29a2ada22f 72 Gene3D G3DSA:1.10.260.40 3 72 3.0E-9 T 29-03-2018 Y880_RS11460 2e0d87ee35cf35e092ca2d29a2ada22f 72 SMART SM00530 9 62 0.006 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 SMART SM00448 13 124 5.3E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 148 165 2.6E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 165 185 2.6E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 Pfam PF02954 Bacterial regulatory protein, Fis family 148 181 8.0E-12 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 Gene3D G3DSA:3.40.50.2300 7 133 2.2E-29 T 29-03-2018 Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 SUPERFAMILY SSF52172 12 171 6.69E-33 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 Pfam PF00072 Response regulator receiver domain 16 124 4.7E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS20770 42043027a0f2f273f0f41f0d0b676dd9 186 Gene3D G3DSA:1.10.10.60 135 181 2.6E-15 T 29-03-2018 Y880_RS16310 cb3d43b4c6b99631bf0b203a6a66fa9b 408 Pfam PF04143 Sulphur transport 239 393 1.3E-20 T 29-03-2018 IPR007272 Sulphur transport domain Y880_RS16310 cb3d43b4c6b99631bf0b203a6a66fa9b 408 Pfam PF04143 Sulphur transport 7 162 8.1E-26 T 29-03-2018 IPR007272 Sulphur transport domain Y880_RS02650 a65335ed8bffafa8df5685fd292fd43d 177 SMART SM01321 9 132 6.8E-40 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS02650 a65335ed8bffafa8df5685fd292fd43d 177 Pfam PF01797 Transposase IS200 like 14 130 2.3E-7 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS02650 a65335ed8bffafa8df5685fd292fd43d 177 Gene3D G3DSA:3.30.70.1290 1 139 1.9E-35 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS02650 a65335ed8bffafa8df5685fd292fd43d 177 SUPERFAMILY SSF143422 1 138 9.55E-36 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y880_RS21080 6f28ddce648fd0d0d10ef4e5977732fc 169 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 2.6E-4 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21080 6f28ddce648fd0d0d10ef4e5977732fc 169 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 1.6E-4 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site Y880_RS21080 6f28ddce648fd0d0d10ef4e5977732fc 169 Gene3D G3DSA:3.30.700.10 10 140 2.9E-6 T 29-03-2018 Y880_RS21080 6f28ddce648fd0d0d10ef4e5977732fc 169 Pfam PF12019 Type II transport protein GspH 47 148 3.4E-14 T 29-03-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y880_RS21080 6f28ddce648fd0d0d10ef4e5977732fc 169 SUPERFAMILY SSF54523 10 142 8.63E-16 T 29-03-2018 Y880_RS26005 a95295f5657de90dab318c404176e7f3 314 Pfam PF03547 Membrane transport protein 165 299 5.1E-8 T 29-03-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Y880_RS09625 ad39acd365d952eb49694077bacb87b4 283 Pfam PF13649 Methyltransferase domain 55 151 4.2E-11 T 29-03-2018 Y880_RS09625 ad39acd365d952eb49694077bacb87b4 283 Gene3D G3DSA:3.40.50.150 36 249 3.1E-25 T 29-03-2018 Y880_RS09625 ad39acd365d952eb49694077bacb87b4 283 SUPERFAMILY SSF53335 30 248 4.94E-31 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS12345 19b616e5f700db85a315d1e41ab27784 305 Gene3D G3DSA:3.40.50.300 16 181 1.4E-23 T 29-03-2018 Y880_RS12345 19b616e5f700db85a315d1e41ab27784 305 PIRSF PIRSF002849 1 304 2.1E-119 T 29-03-2018 Y880_RS12345 19b616e5f700db85a315d1e41ab27784 305 Gene3D G3DSA:1.10.8.300 196 302 3.4E-27 T 29-03-2018 Y880_RS12345 19b616e5f700db85a315d1e41ab27784 305 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 35 165 1.0E-61 T 29-03-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Y880_RS12345 19b616e5f700db85a315d1e41ab27784 305 SUPERFAMILY SSF52540 8 282 4.31E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS05065 ed8d6c99c7e1ee84b1949d7848c5a4be 344 SUPERFAMILY SSF51556 32 334 1.91E-23 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS05065 ed8d6c99c7e1ee84b1949d7848c5a4be 344 Pfam PF04909 Amidohydrolase 32 334 6.7E-12 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS05065 ed8d6c99c7e1ee84b1949d7848c5a4be 344 Gene3D G3DSA:3.20.20.140 20 342 3.1E-30 T 29-03-2018 Y880_RS28185 27471bc927edc614e39cfba4d054e073 232 SMART SM00702 43 222 9.6E-38 T 29-03-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 Y880_RS28185 27471bc927edc614e39cfba4d054e073 232 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 134 222 3.5E-19 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS28185 27471bc927edc614e39cfba4d054e073 232 Gene3D G3DSA:2.60.120.620 31 229 6.7E-34 T 29-03-2018 Y880_RS01735 54dc750d71f8b287720bedec09e0b47c 203 SUPERFAMILY SSF49401 27 203 7.46E-21 T 29-03-2018 IPR008966 Adhesion domain Y880_RS01735 54dc750d71f8b287720bedec09e0b47c 203 Pfam PF00419 Fimbrial protein 28 202 3.5E-13 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS01735 54dc750d71f8b287720bedec09e0b47c 203 Gene3D G3DSA:2.60.40.1090 26 203 5.1E-27 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS07150 1d2a035d6cd13d55e87f564b6696fe88 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 218 1.0E-76 T 29-03-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 Y880_RS07150 1d2a035d6cd13d55e87f564b6696fe88 232 Pfam PF01144 Coenzyme A transferase 11 218 5.9E-78 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS07150 1d2a035d6cd13d55e87f564b6696fe88 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 20 35 - T 29-03-2018 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS07150 1d2a035d6cd13d55e87f564b6696fe88 232 Gene3D G3DSA:3.40.1080.10 1 232 8.7E-99 T 29-03-2018 Y880_RS07150 1d2a035d6cd13d55e87f564b6696fe88 232 SMART SM00882 8 219 8.0E-92 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 Y880_RS07150 1d2a035d6cd13d55e87f564b6696fe88 232 SUPERFAMILY SSF100950 5 226 7.85E-89 T 29-03-2018 Y880_RS26835 cd235fd9dbac79afccd746139bf7ff9e 228 SUPERFAMILY SSF52964 49 146 6.02E-10 T 29-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 Y880_RS26835 cd235fd9dbac79afccd746139bf7ff9e 228 Pfam PF03783 Curli production assembly/transport component CsgG 48 225 1.2E-30 T 29-03-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 Y880_RS26835 cd235fd9dbac79afccd746139bf7ff9e 228 Gene3D G3DSA:3.40.50.10070 43 185 2.7E-20 T 29-03-2018 Y880_RS19120 10ff8ee920e0c78b2b4e757e19a969a8 261 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 4 257 2.6E-70 T 29-03-2018 Y880_RS19120 10ff8ee920e0c78b2b4e757e19a969a8 261 SUPERFAMILY SSF56219 4 259 1.96E-79 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS19120 10ff8ee920e0c78b2b4e757e19a969a8 261 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 30 39 - T 29-03-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Y880_RS19120 10ff8ee920e0c78b2b4e757e19a969a8 261 Gene3D G3DSA:3.60.10.10 3 260 1.1E-52 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS19120 10ff8ee920e0c78b2b4e757e19a969a8 261 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 251 5.8E-21 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS19120 10ff8ee920e0c78b2b4e757e19a969a8 261 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 4 258 5.2E-70 T 29-03-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Y880_RS04825 fa58b36097d9b2255260c0d943c08279 385 SUPERFAMILY SSF51735 334 364 2.35E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04825 fa58b36097d9b2255260c0d943c08279 385 SUPERFAMILY SSF51735 17 304 2.35E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04825 fa58b36097d9b2255260c0d943c08279 385 Gene3D G3DSA:3.40.50.720 13 373 1.2E-31 T 29-03-2018 Y880_RS04825 fa58b36097d9b2255260c0d943c08279 385 Pfam PF07993 Male sterility protein 21 253 6.6E-30 T 29-03-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 Y880_RS17340 729a6bf4f7dd8c9bb108e0c611375598 165 Pfam PF06271 RDD family 14 151 7.8E-29 T 29-03-2018 IPR010432 RDD Y880_RS14105 ced4b293c979f4678ece13eb5b4c459f 105 Pfam PF06127 Protein of unknown function (DUF962) 9 102 6.4E-38 T 29-03-2018 IPR009305 Protein of unknown function DUF962 Y880_RS01275 181cc66524596ffdeb0d291ee6caf93a 332 PIRSF PIRSF017020 1 332 1.4E-117 T 29-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 Y880_RS01275 181cc66524596ffdeb0d291ee6caf93a 332 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 6 328 1.4E-115 T 29-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 Y880_RS01275 181cc66524596ffdeb0d291ee6caf93a 332 SUPERFAMILY SSF53187 6 329 1.69E-76 T 29-03-2018 Y880_RS01275 181cc66524596ffdeb0d291ee6caf93a 332 Gene3D G3DSA:3.40.630.10 40 297 1.6E-28 T 29-03-2018 Y880_RS01275 181cc66524596ffdeb0d291ee6caf93a 332 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 49 330 1.2E-76 T 29-03-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 Y880_RS01275 181cc66524596ffdeb0d291ee6caf93a 332 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 332 153.935 T 29-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 SUPERFAMILY SSF55874 36 232 5.07E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 Pfam PF00183 Hsp90 protein 300 377 1.6E-8 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 56 168 1.5E-8 T 29-03-2018 Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 PRINTS PR00775 90kDa heat shock protein signature 56 78 2.3E-13 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 PRINTS PR00775 90kDa heat shock protein signature 140 162 2.3E-13 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 PRINTS PR00775 90kDa heat shock protein signature 209 227 2.3E-13 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 PRINTS PR00775 90kDa heat shock protein signature 191 208 2.3E-13 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 SUPERFAMILY SSF54211 256 479 1.21E-28 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 Gene3D G3DSA:3.30.565.10 59 237 3.7E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain Y880_RS02140 5c7f004e50a75d7342f4de1b64b1d848 636 PIRSF PIRSF002583 15 631 3.4E-96 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Y880_RS10760 1d1b7be7cd6f8c35ee81d0cfcf558547 118 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 2 94 2.0E-34 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 Y880_RS10760 1d1b7be7cd6f8c35ee81d0cfcf558547 118 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 117 1.1E-38 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 Y880_RS10760 1d1b7be7cd6f8c35ee81d0cfcf558547 118 Gene3D G3DSA:3.30.479.10 1 118 2.2E-43 T 29-03-2018 Y880_RS10760 1d1b7be7cd6f8c35ee81d0cfcf558547 118 SUPERFAMILY SSF55620 2 117 5.34E-43 T 29-03-2018 Y880_RS10760 1d1b7be7cd6f8c35ee81d0cfcf558547 118 PIRSF PIRSF006113 1 118 1.8E-51 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 7.3E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 16 41 7.3E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 188 208 7.3E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 7.3E-24 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 SUPERFAMILY SSF58104 232 540 1.18E-76 T 29-03-2018 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 Gene3D G3DSA:1.10.287.1060 232 318 0.18 T 29-03-2018 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 185 1.5E-23 T 29-03-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 Gene3D G3DSA:1.10.287.950 319 541 5.4E-54 T 29-03-2018 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 Gene3D G3DSA:1.20.120.30 24 186 9.2E-16 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 SMART SM00304 265 317 29.0 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 SMART SM00304 212 264 2.1E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 507 1.0E-44 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS05080 117c6b377cedb400487a41c8115a0082 541 SMART SM00283 279 540 6.3E-80 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 Gene3D G3DSA:3.30.1330.60 92 267 4.1E-43 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 241 261 1.1E-5 T 29-03-2018 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 221 240 1.1E-5 T 29-03-2018 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 203 220 1.1E-5 T 29-03-2018 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01021 OMPA domain signature 203 219 6.3E-12 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01021 OMPA domain signature 158 180 6.3E-12 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01021 OMPA domain signature 188 203 6.3E-12 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 Pfam PF14346 Domain of unknown function (DUF4398) 15 115 2.2E-20 T 29-03-2018 IPR025511 Domain of unknown function DUF4398 Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 Pfam PF00691 OmpA family 157 252 5.3E-23 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS12470 93db9fa1107f5fa95e0eaa84281386dc 269 SUPERFAMILY SSF103088 149 258 4.32E-36 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS16820 6b3c33f6218d5cfbd48f0115633da2c1 409 Gene3D G3DSA:3.40.50.10540 12 409 3.7E-138 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS16820 6b3c33f6218d5cfbd48f0115633da2c1 409 SUPERFAMILY SSF89796 16 409 8.37E-135 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS16820 6b3c33f6218d5cfbd48f0115633da2c1 409 Pfam PF02515 CoA-transferase family III 18 386 5.1E-121 T 29-03-2018 IPR003673 CoA-transferase family III GO:0003824 Y880_RS21710 ad32348b69bfa08a6b413f0177c9fbb2 205 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 1 200 27.01 T 29-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 Y880_RS21710 ad32348b69bfa08a6b413f0177c9fbb2 205 SUPERFAMILY SSF89392 17 200 1.1E-50 T 29-03-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Y880_RS21710 ad32348b69bfa08a6b413f0177c9fbb2 205 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 2 200 2.3E-90 T 29-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 Y880_RS21710 ad32348b69bfa08a6b413f0177c9fbb2 205 Pfam PF03550 Outer membrane lipoprotein LolB 48 198 4.8E-49 T 29-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 Y880_RS21710 ad32348b69bfa08a6b413f0177c9fbb2 205 Gene3D G3DSA:2.50.20.10 28 201 5.4E-54 T 29-03-2018 Y880_RS07565 d5ff9b3ec732ed580d40f42daf731376 624 Gene3D G3DSA:1.10.760.10 329 624 2.9E-26 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07565 d5ff9b3ec732ed580d40f42daf731376 624 Gene3D G3DSA:1.10.760.10 93 257 0.55 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07565 d5ff9b3ec732ed580d40f42daf731376 624 SUPERFAMILY SSF46626 518 562 3.88E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07565 d5ff9b3ec732ed580d40f42daf731376 624 SUPERFAMILY SSF46626 344 365 3.88E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07565 d5ff9b3ec732ed580d40f42daf731376 624 SUPERFAMILY SSF46626 605 624 3.88E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS29155 4d3e4bdcede3d43838fc175077643249 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 40 53 4.4E-9 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y880_RS29155 4d3e4bdcede3d43838fc175077643249 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 8 21 4.4E-9 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y880_RS29155 4d3e4bdcede3d43838fc175077643249 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 25 39 4.4E-9 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y880_RS29155 4d3e4bdcede3d43838fc175077643249 82 Gene3D G3DSA:2.40.50.100 2 80 1.0E-12 T 29-03-2018 Y880_RS29155 4d3e4bdcede3d43838fc175077643249 82 Pfam PF00364 Biotin-requiring enzyme 5 78 1.4E-14 T 29-03-2018 IPR000089 Biotin/lipoyl attachment Y880_RS29155 4d3e4bdcede3d43838fc175077643249 82 SUPERFAMILY SSF51230 5 78 3.66E-18 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS09220 8740818cd20c2b3d122af76e018bc5aa 178 SUPERFAMILY SSF82185 12 134 4.45E-26 T 29-03-2018 Y880_RS09220 8740818cd20c2b3d122af76e018bc5aa 178 Gene3D G3DSA:2.20.110.10 42 155 1.3E-16 T 29-03-2018 Y880_RS09220 8740818cd20c2b3d122af76e018bc5aa 178 Pfam PF07661 MORN repeat variant 48 65 0.22 T 29-03-2018 IPR011652 MORN variant Y880_RS09220 8740818cd20c2b3d122af76e018bc5aa 178 Pfam PF07661 MORN repeat variant 120 141 0.23 T 29-03-2018 IPR011652 MORN variant Y880_RS09220 8740818cd20c2b3d122af76e018bc5aa 178 Pfam PF07661 MORN repeat variant 96 117 0.0022 T 29-03-2018 IPR011652 MORN variant Y880_RS03190 ea51db2b033c99b3794e61319516422e 221 SUPERFAMILY SSF161098 17 204 2.35E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS03190 ea51db2b033c99b3794e61319516422e 221 Gene3D G3DSA:1.10.3720.10 1 221 4.0E-37 T 29-03-2018 Y880_RS03190 ea51db2b033c99b3794e61319516422e 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 112 1.6E-26 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS03190 ea51db2b033c99b3794e61319516422e 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 211 1.5E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28555 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 Gene3D G3DSA:3.10.20.30 1 66 5.2E-26 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS28555 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 Pfam PF02597 ThiS family 3 66 3.9E-17 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 Y880_RS28555 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 2.2E-24 T 29-03-2018 IPR010035 ThiS, thiamine-biosynthesis Y880_RS28555 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 SUPERFAMILY SSF54285 2 65 5.5E-20 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y880_RS23405 c83dee9ff949caf6c91cd03453db1bdc 234 SUPERFAMILY SSF52218 1 227 2.44E-69 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS23405 c83dee9ff949caf6c91cd03453db1bdc 234 Gene3D G3DSA:3.40.50.360 1 233 9.7E-57 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS23405 c83dee9ff949caf6c91cd03453db1bdc 234 Pfam PF02525 Flavodoxin-like fold 1 207 2.8E-54 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS25870 406a05920c82b73089d2563b2dac907e 241 SUPERFAMILY SSF51445 107 200 6.51E-7 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS25870 406a05920c82b73089d2563b2dac907e 241 Gene3D G3DSA:3.20.20.80 93 228 1.0E-6 T 29-03-2018 Y880_RS25870 406a05920c82b73089d2563b2dac907e 241 Pfam PF11340 Protein of unknown function (DUF3142) 100 184 2.6E-16 T 29-03-2018 IPR021488 Protein of unknown function DUF3142 Y880_RS11920 a5c96e4785ddcb728bc9233bf8d8a65c 316 Pfam PF06834 TraU protein 35 304 1.4E-71 T 29-03-2018 IPR009649 TraU Y880_RS11920 a5c96e4785ddcb728bc9233bf8d8a65c 316 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 30 314 1.5E-131 T 29-03-2018 IPR026331 Integrating conjugative element protein PFL_4710 Y880_RS25005 47a1853ded0fde3717333bebeb6f30e3 233 Pfam PF04340 Protein of unknown function, DUF484 8 227 1.5E-87 T 29-03-2018 IPR007435 Protein of unknown function DUF484 Y880_RS25005 47a1853ded0fde3717333bebeb6f30e3 233 Gene3D G3DSA:3.30.450.40 46 224 2.6E-18 T 29-03-2018 IPR029016 GAF domain-like Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 SUPERFAMILY SSF52540 199 588 4.86E-98 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 SMART SM00382 341 464 1.3E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 SUPERFAMILY SSF160246 16 160 9.15E-12 T 29-03-2018 Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 69 167 1.9E-15 T 29-03-2018 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 Pfam PF00437 Type II/IV secretion system protein 220 480 2.8E-76 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 408 422 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 Gene3D G3DSA:3.30.450.90 188 313 1.6E-44 T 29-03-2018 Y880_RS24650 370b962e6003c2de75ba61b0c19a555b 594 Gene3D G3DSA:3.40.50.300 317 594 4.2E-59 T 29-03-2018 Y880_RS15810 0b5cdcc02b10ebf1646773fb08375834 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 37.721 T 29-03-2018 IPR005583 Peroxide stress protein YaaA Y880_RS15810 0b5cdcc02b10ebf1646773fb08375834 259 Pfam PF03883 Peroxide stress protein YaaA 1 243 5.7E-90 T 29-03-2018 IPR005583 Peroxide stress protein YaaA Y880_RS01085 66d5b970838557475bccf0afe5d2a000 357 SUPERFAMILY SSF54593 8 344 3.29E-80 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS01085 66d5b970838557475bccf0afe5d2a000 357 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 17 356 2.3E-124 T 29-03-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 Y880_RS01085 66d5b970838557475bccf0afe5d2a000 357 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 166 277 2.1E-16 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS01085 66d5b970838557475bccf0afe5d2a000 357 Gene3D G3DSA:3.10.180.10 161 357 7.0E-62 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS01085 66d5b970838557475bccf0afe5d2a000 357 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 10 149 1.9E-51 T 29-03-2018 Y880_RS01085 66d5b970838557475bccf0afe5d2a000 357 PIRSF PIRSF009283 1 357 1.0E-120 T 29-03-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 Y880_RS01085 66d5b970838557475bccf0afe5d2a000 357 Gene3D G3DSA:3.10.180.10 6 160 4.8E-20 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS22045 61c46cb4c3dbe890092c91ae7c2ea6a9 149 Pfam PF04214 Protein of unknown function, DUF 53 120 1.5E-27 T 29-03-2018 IPR007332 Protein of unknown function DUF411 Y880_RS23485 a9b28ffa75ac2dcc6d12d9fb96153074 110 SUPERFAMILY SSF103481 5 106 6.67E-20 T 29-03-2018 Y880_RS23485 a9b28ffa75ac2dcc6d12d9fb96153074 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 7.3E-25 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y880_RS15130 c219bedf11c01fb551b60628c5e540e2 451 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 20 437 2.6E-113 T 29-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 Y880_RS15130 c219bedf11c01fb551b60628c5e540e2 451 Gene3D G3DSA:1.20.1600.10 13 429 1.8E-62 T 29-03-2018 Y880_RS15130 c219bedf11c01fb551b60628c5e540e2 451 Pfam PF02321 Outer membrane efflux protein 24 212 2.6E-19 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS15130 c219bedf11c01fb551b60628c5e540e2 451 Pfam PF02321 Outer membrane efflux protein 239 423 1.2E-28 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS15130 c219bedf11c01fb551b60628c5e540e2 451 SUPERFAMILY SSF56954 22 437 3.4E-79 T 29-03-2018 Y880_RS12765 73db1db17e6ca787da4aa5206fb31367 210 Pfam PF16105 Domain of unknown function (DUF4823) 52 199 5.2E-60 T 29-03-2018 IPR032248 Protein of unknown function DUF4823 Y880_RS25710 4fd6d631e33e57adb79686f7d914fa9a 809 Gene3D G3DSA:2.130.10.120 173 782 2.3E-4 T 29-03-2018 Y880_RS01005 ea42e9ed152c85159977cd4462573883 320 PIRSF PIRSF006278 256 308 66.0 T 29-03-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Y880_RS01005 ea42e9ed152c85159977cd4462573883 320 PIRSF PIRSF006278 2 229 1.9E-8 T 29-03-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Y880_RS01005 ea42e9ed152c85159977cd4462573883 320 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 304 5.0E-64 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS01005 ea42e9ed152c85159977cd4462573883 320 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 56 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y880_RS01005 ea42e9ed152c85159977cd4462573883 320 SUPERFAMILY SSF53686 8 312 1.83E-73 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y880_RS01005 ea42e9ed152c85159977cd4462573883 320 Gene3D G3DSA:3.40.50.1100 29 133 1.3E-28 T 29-03-2018 Y880_RS01005 ea42e9ed152c85159977cd4462573883 320 Gene3D G3DSA:3.40.50.1100 134 319 2.5E-29 T 29-03-2018 Y880_RS05310 fe5f04d9ac896c3f880f7f60e817e597 398 Pfam PF03594 Benzoate membrane transport protein 16 345 2.7E-145 T 29-03-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Y880_RS05310 fe5f04d9ac896c3f880f7f60e817e597 398 TIGRFAM TIGR00843 benE: benzoate transporter 18 344 4.7E-110 T 29-03-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Y880_RS23840 96df22e9c333fa08211c677c7c995bd2 559 TIGRFAM TIGR01839 PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II 1 559 0.0 T 29-03-2018 IPR011287 Poly(R)-hydroxyalkanoic acid synthase, class II GO:0016746|GO:0042619 Y880_RS23840 96df22e9c333fa08211c677c7c995bd2 559 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 75 243 2.2E-65 T 29-03-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 Y880_RS23840 96df22e9c333fa08211c677c7c995bd2 559 SUPERFAMILY SSF53474 198 489 4.16E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS23840 96df22e9c333fa08211c677c7c995bd2 559 Gene3D G3DSA:3.40.50.1820 166 503 5.6E-16 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS20170 d83aa6debe17f5f2595771c9199900a9 398 PIRSF PIRSF000484 1 385 6.9E-62 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y880_RS20170 d83aa6debe17f5f2595771c9199900a9 398 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 171 397 9.1E-83 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y880_RS20170 d83aa6debe17f5f2595771c9199900a9 398 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 10 397 6.0E-150 T 29-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS20170 d83aa6debe17f5f2595771c9199900a9 398 SUPERFAMILY SSF54675 6 140 4.71E-42 T 29-03-2018 Y880_RS20170 d83aa6debe17f5f2595771c9199900a9 398 SUPERFAMILY SSF51690 122 396 3.2E-89 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS20170 d83aa6debe17f5f2595771c9199900a9 398 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 7 398 48.512 T 29-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y880_RS20170 d83aa6debe17f5f2595771c9199900a9 398 Gene3D G3DSA:3.20.140.10 4 398 4.3E-102 T 29-03-2018 Y880_RS21910 9f60e233d2c113f45fab0b42681eee59 512 Gene3D G3DSA:1.10.3720.10 12 250 4.4E-32 T 29-03-2018 Y880_RS21910 9f60e233d2c113f45fab0b42681eee59 512 SUPERFAMILY SSF161098 8 250 1.07E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS21910 9f60e233d2c113f45fab0b42681eee59 512 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 333 496 4.9E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS21910 9f60e233d2c113f45fab0b42681eee59 512 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 240 9.4E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS21910 9f60e233d2c113f45fab0b42681eee59 512 SUPERFAMILY SSF161098 270 503 1.44E-31 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS21910 9f60e233d2c113f45fab0b42681eee59 512 Gene3D G3DSA:1.10.3720.10 305 508 3.1E-23 T 29-03-2018 Y880_RS15615 620ce36218794482355bd83dec457a94 339 SUPERFAMILY SSF55961 134 329 6.46E-44 T 29-03-2018 Y880_RS15615 620ce36218794482355bd83dec457a94 339 Gene3D G3DSA:2.102.10.10 11 121 6.5E-22 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS15615 620ce36218794482355bd83dec457a94 339 Gene3D G3DSA:3.90.380.10 122 333 8.2E-34 T 29-03-2018 Y880_RS15615 620ce36218794482355bd83dec457a94 339 Pfam PF00355 Rieske [2Fe-2S] domain 19 96 2.7E-16 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS15615 620ce36218794482355bd83dec457a94 339 SUPERFAMILY SSF50022 14 125 1.9E-27 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y880_RS21000 7d5954ee95faf60c6e93791c24435f47 56 Pfam PF11293 Protein of unknown function (DUF3094) 2 56 1.6E-35 T 29-03-2018 IPR021444 Protein of unknown function DUF3094 Y880_RS24395 1e46e9042f3690ad17b473c7a8db2e8c 352 Gene3D G3DSA:3.90.25.10 201 352 3.7E-51 T 29-03-2018 Y880_RS24395 1e46e9042f3690ad17b473c7a8db2e8c 352 Gene3D G3DSA:3.40.50.720 1 200 5.8E-36 T 29-03-2018 Y880_RS24395 1e46e9042f3690ad17b473c7a8db2e8c 352 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.0E-100 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24395 1e46e9042f3690ad17b473c7a8db2e8c 352 SUPERFAMILY SSF51735 1 335 9.26E-90 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24395 1e46e9042f3690ad17b473c7a8db2e8c 352 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 337 4.4E-151 T 29-03-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Y880_RS24395 1e46e9042f3690ad17b473c7a8db2e8c 352 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 Pfam PF01926 50S ribosome-binding GTPase 161 284 1.5E-21 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 SUPERFAMILY SSF82051 2 158 2.62E-57 T 29-03-2018 IPR006169 GTP1/OBG domain Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 Gene3D G3DSA:3.40.50.300 156 392 4.5E-29 T 29-03-2018 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 SUPERFAMILY SSF52540 151 339 7.25E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 333 4.8E-145 T 29-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 PIRSF PIRSF002401 1 378 1.6E-136 T 29-03-2018 IPR035101 GTP-binding protein, Obg-type Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 Pfam PF01018 GTP1/OBG 4 158 2.8E-60 T 29-03-2018 IPR006169 GTP1/OBG domain Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 29-03-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 Hamap MF_01454 GTPase Obg [obg]. 2 334 47.483 T 29-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Y880_RS21165 3250e70161daaf149ca278e456bf69e0 406 Gene3D G3DSA:2.70.210.12 2 155 4.5E-58 T 29-03-2018 IPR006169 GTP1/OBG domain Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 SUPERFAMILY SSF82866 203 392 3.53E-28 T 29-03-2018 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 Pfam PF03176 MMPL family 171 422 1.3E-7 T 29-03-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 Pfam PF03176 MMPL family 588 794 3.2E-16 T 29-03-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 Gene3D G3DSA:1.20.1640.10 202 403 6.1E-26 T 29-03-2018 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 Gene3D G3DSA:1.20.1640.10 584 797 1.0E-34 T 29-03-2018 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 SUPERFAMILY SSF82866 588 791 1.2E-33 T 29-03-2018 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 PRINTS PR00702 Acriflavin resistance protein family signature 685 709 1.9E-5 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 PRINTS PR00702 Acriflavin resistance protein family signature 633 656 1.9E-5 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 PRINTS PR00702 Acriflavin resistance protein family signature 760 783 1.9E-5 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS08430 2052e9c0be6f53184b0ca62b41554810 804 PRINTS PR00702 Acriflavin resistance protein family signature 336 360 1.9E-5 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Y880_RS16580 25006f9c9d2ea33264c4337f1b854a0e 230 Gene3D G3DSA:3.30.420.40 134 227 0.12 T 29-03-2018 Y880_RS16580 25006f9c9d2ea33264c4337f1b854a0e 230 Gene3D G3DSA:3.30.420.40 1 133 1.7E-38 T 29-03-2018 Y880_RS16580 25006f9c9d2ea33264c4337f1b854a0e 230 Pfam PF00814 Glycoprotease family 32 150 3.6E-28 T 29-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Y880_RS16580 25006f9c9d2ea33264c4337f1b854a0e 230 SUPERFAMILY SSF53067 109 214 3.5E-25 T 29-03-2018 Y880_RS16580 25006f9c9d2ea33264c4337f1b854a0e 230 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 4 216 7.7E-62 T 29-03-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 Y880_RS16580 25006f9c9d2ea33264c4337f1b854a0e 230 SUPERFAMILY SSF53067 4 106 3.24E-28 T 29-03-2018 Y880_RS14935 880e46c2ef76c00db7242932869b4a85 346 Pfam PF05593 RHS Repeat 301 337 5.2E-8 T 29-03-2018 IPR031325 RHS repeat Y880_RS14935 880e46c2ef76c00db7242932869b4a85 346 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 296 320 8.8E-5 T 29-03-2018 IPR006530 YD repeat Y880_RS14935 880e46c2ef76c00db7242932869b4a85 346 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 174 196 0.003 T 29-03-2018 IPR006530 YD repeat Y880_RS14440 3aef0f4a1f8791d055fb4634a2c2094b 440 Gene3D G3DSA:2.40.160.10 30 440 2.2E-63 T 29-03-2018 Y880_RS14440 3aef0f4a1f8791d055fb4634a2c2094b 440 SUPERFAMILY SSF56935 284 440 2.75E-24 T 29-03-2018 Y880_RS14440 3aef0f4a1f8791d055fb4634a2c2094b 440 SUPERFAMILY SSF56935 55 250 2.75E-24 T 29-03-2018 Y880_RS14440 3aef0f4a1f8791d055fb4634a2c2094b 440 Pfam PF07396 Phosphate-selective porin O and P 58 440 1.9E-108 T 29-03-2018 IPR010870 Phosphate-selective porin O/P Y880_RS21685 9ea90818f65d27cb0e1ba2dd6727e5ca 252 SUPERFAMILY SSF69572 2 247 7.19E-83 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y880_RS21685 9ea90818f65d27cb0e1ba2dd6727e5ca 252 Pfam PF00899 ThiF family 10 243 1.2E-59 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y880_RS21685 9ea90818f65d27cb0e1ba2dd6727e5ca 252 Gene3D G3DSA:3.40.50.720 1 248 5.8E-71 T 29-03-2018 Y880_RS00795 85f65171b70baaa72b7f617f0d6f060d 288 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 2 243 8.9E-38 T 29-03-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 Y880_RS00795 85f65171b70baaa72b7f617f0d6f060d 288 SUPERFAMILY SSF89550 1 264 1.96E-42 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Y880_RS00795 85f65171b70baaa72b7f617f0d6f060d 288 Gene3D G3DSA:3.20.20.140 2 255 1.7E-38 T 29-03-2018 Y880_RS00795 85f65171b70baaa72b7f617f0d6f060d 288 SMART SM00481 2 84 3.0E-5 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Y880_RS00795 85f65171b70baaa72b7f617f0d6f060d 288 Pfam PF02811 PHP domain 3 87 6.2E-12 T 29-03-2018 IPR004013 PHP domain GO:0003824 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 PRINTS PR00410 Phenol hydroxylase reductase family signature 195 214 7.7E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 PRINTS PR00410 Phenol hydroxylase reductase family signature 134 141 7.7E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 PRINTS PR00410 Phenol hydroxylase reductase family signature 288 296 7.7E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 Gene3D G3DSA:3.40.50.80 183 304 5.2E-12 T 29-03-2018 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 Gene3D G3DSA:3.10.20.30 3 92 6.5E-24 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 Pfam PF00175 Oxidoreductase NAD-binding domain 196 254 3.5E-6 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 Gene3D G3DSA:2.40.30.10 93 182 3.8E-12 T 29-03-2018 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 SUPERFAMILY SSF54292 8 85 4.98E-24 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 SUPERFAMILY SSF63380 100 179 8.96E-17 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 76 1.6E-15 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 SUPERFAMILY SSF52343 188 305 1.15E-20 T 29-03-2018 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 118 128 3.7E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 134 141 3.7E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS19940 50c3f83dd0fb4ee8a0ae61a22f9da3f0 308 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 195 214 3.7E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y880_RS21965 a48ad1a727965bb5cd01c2c8535089ef 109 SUPERFAMILY SSF158452 7 107 3.14E-34 T 29-03-2018 IPR023376 YqcC-like domain Y880_RS21965 a48ad1a727965bb5cd01c2c8535089ef 109 Gene3D G3DSA:1.20.1440.40 5 105 1.2E-32 T 29-03-2018 IPR023376 YqcC-like domain Y880_RS21965 a48ad1a727965bb5cd01c2c8535089ef 109 PIRSF PIRSF006257 2 109 1.1E-39 T 29-03-2018 IPR007384 Protein of unknown function UCP006257 Y880_RS21965 a48ad1a727965bb5cd01c2c8535089ef 109 Pfam PF04287 tRNA pseudouridine synthase C 8 104 3.3E-33 T 29-03-2018 IPR023376 YqcC-like domain Y880_RS28895 d1984465cbc74c5b50381889a602929f 496 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 38 455 7.2E-92 T 29-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 Y880_RS06275 9721cc9f91cf8fceb551813de7b83a7a 356 Gene3D G3DSA:3.90.1200.10 121 355 8.4E-32 T 29-03-2018 Y880_RS06275 9721cc9f91cf8fceb551813de7b83a7a 356 Gene3D G3DSA:3.30.200.20 15 116 5.6E-27 T 29-03-2018 Y880_RS06275 9721cc9f91cf8fceb551813de7b83a7a 356 SUPERFAMILY SSF56112 18 340 7.29E-60 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS06275 9721cc9f91cf8fceb551813de7b83a7a 356 Pfam PF01636 Phosphotransferase enzyme family 38 273 8.4E-50 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase Y880_RS18915 4f87b0a55f8b3356b9052c454afb6f74 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 463 6.5E-219 T 29-03-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y880_RS18915 4f87b0a55f8b3356b9052c454afb6f74 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS18915 4f87b0a55f8b3356b9052c454afb6f74 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 442 1.2E-106 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS18915 4f87b0a55f8b3356b9052c454afb6f74 475 Gene3D G3DSA:1.20.210.10 4 473 3.8E-91 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS18915 4f87b0a55f8b3356b9052c454afb6f74 475 SUPERFAMILY SSF81442 10 466 2.62E-119 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS14750 5a4cdc4cdec97e3ebd7d8676a6567a6f 250 Gene3D G3DSA:3.40.50.150 33 238 3.3E-13 T 29-03-2018 Y880_RS14750 5a4cdc4cdec97e3ebd7d8676a6567a6f 250 SUPERFAMILY SSF53335 15 225 3.62E-13 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS00800 73c5c0ac97b7681c46ded8673702a904 373 Pfam PF15610 PRTase ComF-like 94 354 1.2E-68 T 29-03-2018 IPR028944 PRTase ComF-like Y880_RS07130 15e6a4380bda7d9de21c4c092a31727f 118 Pfam PF04237 YjbR 11 101 1.4E-13 T 29-03-2018 IPR007351 Uncharacterised protein YjbR Y880_RS07130 15e6a4380bda7d9de21c4c092a31727f 118 SUPERFAMILY SSF142906 1 114 1.03E-28 T 29-03-2018 Y880_RS22690 c8236681fc25efd456fa499fea936832 263 Pfam PF03059 Nicotianamine synthase protein 118 246 7.8E-12 T 29-03-2018 IPR004298 Nicotianamine synthase GO:0030410|GO:0030418 MetaCyc: PWY-5912|MetaCyc: PWY-5957 Y880_RS22690 c8236681fc25efd456fa499fea936832 263 Gene3D G3DSA:3.40.50.150 16 257 4.2E-15 T 29-03-2018 Y880_RS22690 c8236681fc25efd456fa499fea936832 263 SUPERFAMILY SSF53335 111 220 9.3E-10 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS21540 fc722838f4533248afced06ee678610b 87 Pfam PF09413 Putative prokaryotic signal transducing protein 1 63 1.7E-12 T 29-03-2018 IPR018551 Domain of unknown function DUF2007 Y880_RS21540 fc722838f4533248afced06ee678610b 87 SUPERFAMILY SSF54913 1 68 2.89E-5 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Y880_RS21540 fc722838f4533248afced06ee678610b 87 Gene3D G3DSA:3.30.70.790 1 73 5.1E-19 T 29-03-2018 Y880_RS09865 9486540aacda4d5aa0a6709f34a7923b 448 Pfam PF03573 outer membrane porin, OprD family 35 446 7.1E-147 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS09865 9486540aacda4d5aa0a6709f34a7923b 448 Gene3D G3DSA:2.40.160.10 3 448 1.7E-121 T 29-03-2018 Y880_RS12280 3fe869f054f67a13fbb5438028739590 311 SUPERFAMILY SSF53474 29 307 2.7E-54 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS12280 3fe869f054f67a13fbb5438028739590 311 Pfam PF00561 alpha/beta hydrolase fold 35 280 2.5E-25 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS12280 3fe869f054f67a13fbb5438028739590 311 Gene3D G3DSA:3.40.50.1820 23 303 2.9E-37 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29290 6cd70c5ed376a551b3443eb30c54645a 260 Pfam PF07728 AAA domain (dynein-related subfamily) 27 161 1.7E-31 T 29-03-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Y880_RS29290 6cd70c5ed376a551b3443eb30c54645a 260 SUPERFAMILY SSF52540 14 232 1.45E-33 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS29290 6cd70c5ed376a551b3443eb30c54645a 260 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 174 256 2.6E-30 T 29-03-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal Y880_RS29290 6cd70c5ed376a551b3443eb30c54645a 260 Gene3D G3DSA:3.40.50.300 14 167 2.0E-23 T 29-03-2018 Y880_RS23830 a116e7fe727122180ca8d6e3e5f14531 123 Pfam PF06155 Protein of unknown function (DUF971) 7 88 1.1E-23 T 29-03-2018 IPR010376 Domain of unknown function DUF971 Reactome: R-HSA-71262 Y880_RS00885 33b56355e38680447f4f394f490e297b 227 SUPERFAMILY SSF46689 39 99 3.49E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS00885 33b56355e38680447f4f394f490e297b 227 ProSitePatterns PS01081 TetR-type HTH domain signature. 54 85 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS00885 33b56355e38680447f4f394f490e297b 227 Gene3D G3DSA:1.10.357.10 17 219 7.0E-24 T 29-03-2018 Y880_RS00885 33b56355e38680447f4f394f490e297b 227 Pfam PF00440 Bacterial regulatory proteins, tetR family 45 87 9.5E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS16415 80c48b732a673690dbdea546eec447ea 251 SUPERFAMILY SSF64005 10 233 2.75E-84 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y880_RS16415 80c48b732a673690dbdea546eec447ea 251 Pfam PF01255 Putative undecaprenyl diphosphate synthase 17 237 5.1E-78 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y880_RS16415 80c48b732a673690dbdea546eec447ea 251 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 10 238 39.247 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y880_RS16415 80c48b732a673690dbdea546eec447ea 251 Gene3D G3DSA:3.40.1180.10 1 241 3.4E-90 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y880_RS16415 80c48b732a673690dbdea546eec447ea 251 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 183 200 - T 29-03-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199 Y880_RS16415 80c48b732a673690dbdea546eec447ea 251 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 10 237 6.5E-91 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y880_RS23925 9ed63edf3601b4bd284f93194091e81d 153 Pfam PF03682 Uncharacterised protein family (UPF0158) 1 152 1.3E-56 T 29-03-2018 IPR005361 Uncharacterised protein family UPF0158 Y880_RS22990 9abc8d7f7ad95f3085e380f866fda729 79 Pfam PF16220 Domain of unknown function (DUF4880) 33 74 2.5E-13 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS06185 c5a4adf94cb56ad64b3d7cdb0f2c775d 609 Gene3D G3DSA:3.90.76.10 64 218 7.3E-25 T 29-03-2018 Y880_RS06185 c5a4adf94cb56ad64b3d7cdb0f2c775d 609 SUPERFAMILY SSF53850 48 603 8.32E-115 T 29-03-2018 Y880_RS06185 c5a4adf94cb56ad64b3d7cdb0f2c775d 609 Gene3D G3DSA:3.10.105.10 331 574 1.6E-45 T 29-03-2018 Y880_RS06185 c5a4adf94cb56ad64b3d7cdb0f2c775d 609 Gene3D G3DSA:3.40.190.10 219 330 8.2E-19 T 29-03-2018 Y880_RS06185 c5a4adf94cb56ad64b3d7cdb0f2c775d 609 PIRSF PIRSF002741 1 606 8.6E-98 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y880_RS06185 c5a4adf94cb56ad64b3d7cdb0f2c775d 609 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 113 517 6.8E-68 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain Y880_RS03400 765e5bed8dcc6ed3a724b76454cdc4b4 327 Pfam PF04773 FecR protein 119 209 6.9E-19 T 29-03-2018 IPR006860 FecR protein Y880_RS03400 765e5bed8dcc6ed3a724b76454cdc4b4 327 PIRSF PIRSF018266 12 327 1.7E-89 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS03400 765e5bed8dcc6ed3a724b76454cdc4b4 327 Pfam PF16344 Domain of unknown function (DUF4974) 227 305 9.1E-8 T 29-03-2018 IPR032508 Protein FecR, C-terminal Y880_RS03400 765e5bed8dcc6ed3a724b76454cdc4b4 327 Pfam PF16220 Domain of unknown function (DUF4880) 22 63 1.2E-10 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS03115 5daa400edb30299036fbb7f456db2de3 414 Gene3D G3DSA:1.20.5.1230 2 388 9.0E-8 T 29-03-2018 Y880_RS19995 0c712e2de9d4affc6513d0fd2ea1fe0c 494 SUPERFAMILY SSF75304 13 484 7.59E-126 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS19995 0c712e2de9d4affc6513d0fd2ea1fe0c 494 Pfam PF01425 Amidase 35 466 1.2E-88 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS19995 0c712e2de9d4affc6513d0fd2ea1fe0c 494 Gene3D G3DSA:3.90.1300.10 10 490 5.6E-125 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y880_RS23770 03855a789a63222a2db217c7ac492256 198 Pfam PF05137 Fimbrial assembly protein (PilN) 100 177 8.7E-21 T 29-03-2018 IPR007813 Fimbrial assembly PilN Y880_RS13110 da81967eb00c2d0d1109b04d3316a7ca 128 Pfam PF07007 Lysozyme inhibitor LprI 37 111 6.1E-14 T 29-03-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal Y880_RS02000 8347a15af8bb9bcc94ca00029d781475 210 SUPERFAMILY SSF103088 78 207 1.44E-35 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS02000 8347a15af8bb9bcc94ca00029d781475 210 Pfam PF00691 OmpA family 105 201 5.2E-24 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS02000 8347a15af8bb9bcc94ca00029d781475 210 Gene3D G3DSA:3.30.1330.60 76 210 3.9E-41 T 29-03-2018 IPR006665 OmpA-like domain Y880_RS02000 8347a15af8bb9bcc94ca00029d781475 210 PRINTS PR01021 OMPA domain signature 136 151 2.6E-17 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS02000 8347a15af8bb9bcc94ca00029d781475 210 PRINTS PR01021 OMPA domain signature 151 167 2.6E-17 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS02000 8347a15af8bb9bcc94ca00029d781475 210 PRINTS PR01021 OMPA domain signature 105 127 2.6E-17 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y880_RS10445 af7cf248c264793a1eff95529b3eab1a 119 SUPERFAMILY SSF75169 4 118 5.72E-35 T 29-03-2018 IPR027396 DsrEFH-like Y880_RS10445 af7cf248c264793a1eff95529b3eab1a 119 Pfam PF02635 DsrE/DsrF-like family 4 118 2.0E-20 T 29-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein Y880_RS10445 af7cf248c264793a1eff95529b3eab1a 119 Gene3D G3DSA:3.40.1260.10 5 117 1.5E-21 T 29-03-2018 Y880_RS10445 af7cf248c264793a1eff95529b3eab1a 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 5 118 2.1E-40 T 29-03-2018 IPR017462 Sulphur relay, TusC/DsrF Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 Gene3D G3DSA:3.30.2140.10 158 279 7.8E-18 T 29-03-2018 Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 Gene3D G3DSA:3.30.2140.10 1 141 2.3E-39 T 29-03-2018 Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 73 95 3.7E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 25 48 3.7E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 107 132 3.7E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 49 72 3.7E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 Pfam PF00797 N-acetyltransferase 26 261 2.2E-71 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y880_RS22645 013664ac75830dbd914e9b1d30742c06 279 SUPERFAMILY SSF54001 3 263 7.85E-75 T 29-03-2018 Y880_RS05420 051a43fe126826c257bb9c1af5f5b1be 126 Gene3D G3DSA:3.10.180.10 1 123 1.8E-16 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS05420 051a43fe126826c257bb9c1af5f5b1be 126 SUPERFAMILY SSF54593 4 119 3.89E-20 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS05420 051a43fe126826c257bb9c1af5f5b1be 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 117 5.1E-8 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS02515 faf3a0b60d497fdc49f599e359ff194e 329 Pfam PF00248 Aldo/keto reductase family 17 309 1.7E-74 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS02515 faf3a0b60d497fdc49f599e359ff194e 329 SUPERFAMILY SSF51430 6 317 2.23E-95 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS02515 faf3a0b60d497fdc49f599e359ff194e 329 PRINTS PR00069 Aldo-keto reductase signature 45 69 7.4E-11 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS02515 faf3a0b60d497fdc49f599e359ff194e 329 PRINTS PR00069 Aldo-keto reductase signature 109 127 7.4E-11 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS02515 faf3a0b60d497fdc49f599e359ff194e 329 PRINTS PR00069 Aldo-keto reductase signature 140 157 7.4E-11 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS02515 faf3a0b60d497fdc49f599e359ff194e 329 Gene3D G3DSA:3.20.20.100 1 323 2.6E-91 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS04015 625c5e76c41f3188844094c8ec0ad944 346 SUPERFAMILY SSF52768 2 343 4.41E-87 T 29-03-2018 Y880_RS04015 625c5e76c41f3188844094c8ec0ad944 346 PRINTS PR01270 Histone deacetylase superfamily signature 157 180 9.2E-14 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS04015 625c5e76c41f3188844094c8ec0ad944 346 PRINTS PR01270 Histone deacetylase superfamily signature 190 205 9.2E-14 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS04015 625c5e76c41f3188844094c8ec0ad944 346 PRINTS PR01270 Histone deacetylase superfamily signature 276 286 9.2E-14 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS04015 625c5e76c41f3188844094c8ec0ad944 346 Pfam PF00850 Histone deacetylase domain 29 338 1.8E-63 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS04015 625c5e76c41f3188844094c8ec0ad944 346 Gene3D G3DSA:3.40.800.20 1 345 1.8E-79 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y880_RS02050 8a0a22167c17646ade73e12f24b0da86 452 Pfam PF02447 GntP family permease 1 450 3.3E-96 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 109 129 1.5E-5 T 29-03-2018 Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 1.5E-5 T 29-03-2018 Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 1.5E-5 T 29-03-2018 Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 Gene3D G3DSA:1.20.1250.20 6 202 2.0E-32 T 29-03-2018 Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 Gene3D G3DSA:1.20.1250.20 260 476 7.5E-24 T 29-03-2018 Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 Pfam PF07690 Major Facilitator Superfamily 20 410 2.3E-48 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 SUPERFAMILY SSF103473 4 197 2.22E-62 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 SUPERFAMILY SSF103473 249 467 2.22E-62 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS28970 c05998734a8d4c819971c5fae68fab74 477 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 417 4.4E-78 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 Y880_RS21475 cd2af3498a7bf1ea366ef96ae7a5e611 129 Gene3D G3DSA:3.40.50.720 8 128 5.3E-4 T 29-03-2018 Y880_RS29385 998679d9cf9b71f06feddcb534caeb48 202 Gene3D G3DSA:1.20.1440.20 13 195 1.6E-54 T 29-03-2018 Y880_RS29385 998679d9cf9b71f06feddcb534caeb48 202 SUPERFAMILY SSF140478 26 182 8.76E-54 T 29-03-2018 IPR023353 LemA-like domain Y880_RS29385 998679d9cf9b71f06feddcb534caeb48 202 Pfam PF04011 LemA family 12 195 2.9E-64 T 29-03-2018 IPR007156 LemA Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 81 93 2.7E-20 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 29 45 2.7E-20 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 130 149 2.7E-20 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 ProSitePatterns PS00761 Signal peptidases I signature 3. 135 148 - T 29-03-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 Gene3D G3DSA:2.10.109.10 27 176 1.6E-49 T 29-03-2018 Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 SUPERFAMILY SSF51306 30 170 4.29E-55 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 ProSitePatterns PS00760 Signal peptidases I lysine active site. 83 95 - T 29-03-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 26 169 9.9E-51 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y880_RS03410 d3ce4a56c8486152dc6402e4a04d360a 179 Pfam PF00717 Peptidase S24-like 35 104 1.3E-18 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 5.3E-39 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 5.3E-39 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 5.3E-39 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 5.3E-39 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 5.3E-39 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 Pfam PF00117 Glutamine amidotransferase class-I 197 372 9.9E-47 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 Gene3D G3DSA:3.40.50.880 152 378 1.6E-67 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 SUPERFAMILY SSF52021 4 144 1.96E-56 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 SUPERFAMILY SSF52317 153 377 3.21E-62 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.1E-5 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.1E-5 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.1E-5 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 Gene3D G3DSA:3.50.30.20 2 151 2.5E-62 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 47.728 T 29-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 SMART SM01097 3 133 8.9E-92 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 1.1E-51 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.1E-11 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.1E-11 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.1E-11 T 29-03-2018 Y880_RS22285 593379bc28593faf123018c1e466a9e3 378 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 9.5E-144 T 29-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 SUPERFAMILY SSF53850 97 300 2.9E-35 T 29-03-2018 Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 7.1E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 7.1E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 7.1E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 SUPERFAMILY SSF46785 6 86 2.06E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 TIGRFAM TIGR03418 chol_sulf_TF: putative choline sulfate-utilization transcription factor 10 298 4.2E-139 T 29-03-2018 IPR017786 Transcription factor, choline sulphate-utilisation, putative Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 Pfam PF03466 LysR substrate binding domain 93 299 1.9E-36 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 6.3E-24 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 Gene3D G3DSA:3.40.190.10 88 211 1.8E-21 T 29-03-2018 Y880_RS26745 b362edc38a3935e57d74e455b5582c9c 304 Gene3D G3DSA:1.10.10.10 6 87 2.3E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 Pfam PF01494 FAD binding domain 4 345 2.6E-23 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 4 394 3.9E-135 T 29-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 1.4E-17 T 29-03-2018 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 1.4E-17 T 29-03-2018 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.4E-17 T 29-03-2018 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 1.4E-17 T 29-03-2018 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 Gene3D G3DSA:3.50.50.60 1 367 3.4E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 298 311 - T 29-03-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 SUPERFAMILY SSF51905 1 177 2.99E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS24705 797d8ee156bc6d326cc9d1106869b93b 405 SUPERFAMILY SSF51905 280 400 2.99E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS05770 e8e33de49be895f50a4527ca592b72e0 323 SUPERFAMILY SSF51430 1 313 2.62E-99 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS05770 e8e33de49be895f50a4527ca592b72e0 323 PRINTS PR00069 Aldo-keto reductase signature 45 69 7.7E-6 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS05770 e8e33de49be895f50a4527ca592b72e0 323 PRINTS PR00069 Aldo-keto reductase signature 142 159 7.7E-6 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS05770 e8e33de49be895f50a4527ca592b72e0 323 PRINTS PR00069 Aldo-keto reductase signature 111 129 7.7E-6 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y880_RS05770 e8e33de49be895f50a4527ca592b72e0 323 Gene3D G3DSA:3.20.20.100 3 318 1.3E-97 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS05770 e8e33de49be895f50a4527ca592b72e0 323 Pfam PF00248 Aldo/keto reductase family 15 311 3.6E-72 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 Pfam PF12833 Helix-turn-helix domain 194 272 3.7E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 SMART SM00342 188 270 1.7E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 Pfam PF02311 AraC-like ligand binding domain 16 148 8.0E-31 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 Gene3D G3DSA:1.10.10.60 228 276 9.6E-14 T 29-03-2018 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 SUPERFAMILY SSF46689 175 222 6.54E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 SUPERFAMILY SSF46689 224 274 3.32E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 SUPERFAMILY SSF51215 15 154 9.42E-28 T 29-03-2018 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 Gene3D G3DSA:2.60.120.280 12 148 5.9E-15 T 29-03-2018 Y880_RS12560 91a737f9e6a2567b1e3f15b8952f4f86 278 Gene3D G3DSA:1.10.10.60 149 227 8.8E-15 T 29-03-2018 Y880_RS15125 2ef33bb259949c4c2330d7a10c9c058b 95 Pfam PF12021 Protein of unknown function (DUF3509) 6 88 8.5E-28 T 29-03-2018 IPR021898 Protein of unknown function DUF3509 Y880_RS18590 4bc77384675cf0a67f1b5bbf8a50fd8e 294 Gene3D G3DSA:3.40.50.720 39 294 7.8E-20 T 29-03-2018 Y880_RS18590 4bc77384675cf0a67f1b5bbf8a50fd8e 294 Pfam PF04321 RmlD substrate binding domain 3 290 2.1E-79 T 29-03-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Y880_RS18590 4bc77384675cf0a67f1b5bbf8a50fd8e 294 SUPERFAMILY SSF51735 3 291 2.63E-51 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS27105 d3fe0dbc3498b05ee7d83ccb3f940910 315 Pfam PF15635 GHH signature containing HNH/Endo VII superfamily nuclease toxin 2 179 276 5.1E-8 T 29-03-2018 IPR028917 Tox-GHH2 domain Y880_RS27105 d3fe0dbc3498b05ee7d83ccb3f940910 315 Pfam PF13665 Domain of unknown function (DUF4150) 21 133 9.1E-36 T 29-03-2018 IPR025425 Domain of unknown function DUF4150 Y880_RS08220 7548f7bbbe123beadc910c35aab761c5 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 224 2.3E-22 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS08220 7548f7bbbe123beadc910c35aab761c5 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 114 4.0E-13 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Y880_RS08220 7548f7bbbe123beadc910c35aab761c5 225 SUPERFAMILY SSF161098 22 214 2.22E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS08220 7548f7bbbe123beadc910c35aab761c5 225 Gene3D G3DSA:1.10.3720.10 3 225 1.7E-38 T 29-03-2018 Y880_RS09265 5c0565df9e0025157fa8e60b1e8cb95d 100 Pfam PF03466 LysR substrate binding domain 17 83 2.0E-9 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09265 5c0565df9e0025157fa8e60b1e8cb95d 100 Gene3D G3DSA:3.40.190.10 2 57 8.5E-8 T 29-03-2018 Y880_RS09265 5c0565df9e0025157fa8e60b1e8cb95d 100 SUPERFAMILY SSF53850 17 88 2.9E-11 T 29-03-2018 Y880_RS12730 9d021530fea30dd4b081924c10d3cee8 250 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Y880_RS12730 9d021530fea30dd4b081924c10d3cee8 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 2 206 5.6E-48 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12730 9d021530fea30dd4b081924c10d3cee8 250 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 247 4.5E-98 T 29-03-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 Y880_RS12730 9d021530fea30dd4b081924c10d3cee8 250 Gene3D G3DSA:3.40.1010.10 1 119 6.0E-33 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12730 9d021530fea30dd4b081924c10d3cee8 250 SUPERFAMILY SSF53790 2 229 1.27E-68 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS12730 9d021530fea30dd4b081924c10d3cee8 250 Gene3D G3DSA:3.30.950.10 120 247 1.1E-28 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Y880_RS24205 0d26ddbf160e9ff4f27229a4c2067250 153 SUPERFAMILY SSF75217 1 150 6.28E-47 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases Y880_RS24205 0d26ddbf160e9ff4f27229a4c2067250 153 Gene3D G3DSA:3.40.1280.10 1 153 9.0E-39 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y880_RS24205 0d26ddbf160e9ff4f27229a4c2067250 153 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 150 7.9E-58 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Y880_RS24205 0d26ddbf160e9ff4f27229a4c2067250 153 PIRSF PIRSF029256 1 153 9.6E-68 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Y880_RS24205 0d26ddbf160e9ff4f27229a4c2067250 153 Pfam PF00588 SpoU rRNA Methylase family 2 142 3.0E-32 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Y880_RS24205 0d26ddbf160e9ff4f27229a4c2067250 153 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.084 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Y880_RS11825 b18c517963161170c5e9a4668c5c4ed3 84 Gene3D G3DSA:1.10.150.240 46 72 0.0021 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 Y880_RS13570 2d9c5b465ba3e02b5c62ac1158f051ff 180 Pfam PF02674 Colicin V production protein 6 144 5.1E-35 T 29-03-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 Y880_RS15730 dd2ceba1f1d8bd9b4210706c61965dcd 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 358 3.0E-79 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS15730 dd2ceba1f1d8bd9b4210706c61965dcd 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 286 6.6E-19 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS15730 dd2ceba1f1d8bd9b4210706c61965dcd 385 Gene3D G3DSA:2.40.50.100 61 116 1.5E-11 T 29-03-2018 Y880_RS15730 dd2ceba1f1d8bd9b4210706c61965dcd 385 Gene3D G3DSA:2.40.50.100 165 383 6.8E-5 T 29-03-2018 Y880_RS15730 dd2ceba1f1d8bd9b4210706c61965dcd 385 SUPERFAMILY SSF111369 50 293 1.31E-65 T 29-03-2018 Y880_RS15730 dd2ceba1f1d8bd9b4210706c61965dcd 385 Gene3D G3DSA:1.10.287.470 117 164 1.3E-7 T 29-03-2018 Y880_RS12785 387a3edbef936f43063ae6253b4ada3d 258 Pfam PF01026 TatD related DNase 3 254 1.7E-77 T 29-03-2018 IPR001130 TatD family GO:0016788 Y880_RS12785 387a3edbef936f43063ae6253b4ada3d 258 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y880_RS12785 387a3edbef936f43063ae6253b4ada3d 258 PIRSF PIRSF005902 1 258 6.9E-76 T 29-03-2018 IPR001130 TatD family GO:0016788 Y880_RS12785 387a3edbef936f43063ae6253b4ada3d 258 SUPERFAMILY SSF51556 2 256 1.43E-85 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS12785 387a3edbef936f43063ae6253b4ada3d 258 Gene3D G3DSA:3.20.20.140 1 258 1.3E-81 T 29-03-2018 Y880_RS12785 387a3edbef936f43063ae6253b4ada3d 258 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 8.5E-84 T 29-03-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 Y880_RS12785 387a3edbef936f43063ae6253b4ada3d 258 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y880_RS17865 8a066d8971a4c3ab2e1303a471ceb2c8 393 Pfam PF07690 Major Facilitator Superfamily 21 234 3.9E-27 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS17865 8a066d8971a4c3ab2e1303a471ceb2c8 393 Gene3D G3DSA:1.20.1250.20 3 198 4.9E-27 T 29-03-2018 Y880_RS17865 8a066d8971a4c3ab2e1303a471ceb2c8 393 Gene3D G3DSA:1.20.1250.20 199 388 9.8E-16 T 29-03-2018 Y880_RS17865 8a066d8971a4c3ab2e1303a471ceb2c8 393 SUPERFAMILY SSF103473 7 387 1.18E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS15895 e77c77de32fc5c876b272b7e7d071709 295 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 295 65.22 T 29-03-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 Y880_RS15895 e77c77de32fc5c876b272b7e7d071709 295 SUPERFAMILY SSF88713 85 266 2.78E-30 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS15895 e77c77de32fc5c876b272b7e7d071709 295 SUPERFAMILY SSF88713 14 41 2.78E-30 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS15895 e77c77de32fc5c876b272b7e7d071709 295 Pfam PF01522 Polysaccharide deacetylase 15 170 1.0E-13 T 29-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Y880_RS15895 e77c77de32fc5c876b272b7e7d071709 295 Gene3D G3DSA:3.20.20.370 6 275 3.4E-29 T 29-03-2018 Y880_RS15545 a422b3c7fa8e259799dc9eff4b74b82b 266 Gene3D G3DSA:1.20.1170.10 18 224 0.001 T 29-03-2018 Y880_RS15545 a422b3c7fa8e259799dc9eff4b74b82b 266 Pfam PF14257 Domain of unknown function (DUF4349) 25 250 3.5E-24 T 29-03-2018 IPR025645 Domain of unknown function DUF4349 Y880_RS24850 62baf695bdfc83589bcac5dee3e38736 209 Pfam PF01810 LysE type translocator 16 203 7.9E-33 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS24850 62baf695bdfc83589bcac5dee3e38736 209 PIRSF PIRSF006324 1 206 2.8E-51 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS12650 d2256eeddb7659532d0b2ca8b25a1dce 319 Gene3D G3DSA:3.40.50.1820 33 316 2.1E-51 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS12650 d2256eeddb7659532d0b2ca8b25a1dce 319 SUPERFAMILY SSF53474 31 317 1.43E-63 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS12650 d2256eeddb7659532d0b2ca8b25a1dce 319 Pfam PF12697 Alpha/beta hydrolase family 57 302 1.8E-18 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS17660 e4ba4d3af2b595a13c763b8ff12e7d7d 240 Gene3D G3DSA:1.10.3720.10 32 238 3.3E-24 T 29-03-2018 Y880_RS17660 e4ba4d3af2b595a13c763b8ff12e7d7d 240 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 60 230 7.8E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS17660 e4ba4d3af2b595a13c763b8ff12e7d7d 240 SUPERFAMILY SSF161098 37 221 4.32E-33 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28965 59aff2af174d524a654df154a640f1ab 124 Pfam PF06803 Protein of unknown function (DUF1232) 34 70 5.5E-13 T 29-03-2018 IPR010652 Protein of unknown function DUF1232 Y880_RS16105 3676f11105507c971a35270b6180c744 395 SUPERFAMILY SSF89796 6 393 1.7E-135 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS16105 3676f11105507c971a35270b6180c744 395 Gene3D G3DSA:3.40.50.10540 2 395 4.3E-144 T 29-03-2018 IPR023606 CoA-transferase family III domain Y880_RS16105 3676f11105507c971a35270b6180c744 395 Pfam PF02515 CoA-transferase family III 8 370 9.4E-123 T 29-03-2018 IPR003673 CoA-transferase family III GO:0003824 Y880_RS12995 5b6301a726b0fd3a913a31eeedfd9ce4 445 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 445 1.4E-204 T 29-03-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 Y880_RS12995 5b6301a726b0fd3a913a31eeedfd9ce4 445 Pfam PF11973 NQRA C-terminal domain 260 309 1.1E-21 T 29-03-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 Y880_RS12995 5b6301a726b0fd3a913a31eeedfd9ce4 445 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 445 46.093 T 29-03-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 Y880_RS12995 5b6301a726b0fd3a913a31eeedfd9ce4 445 Gene3D G3DSA:2.40.50.100 26 89 0.002 T 29-03-2018 Y880_RS12995 5b6301a726b0fd3a913a31eeedfd9ce4 445 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 255 6.8E-112 T 29-03-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 Y880_RS29535 3847eba0a023d26aed7a4833affc60bb 52 Pfam PF01679 Proteolipid membrane potential modulator 2 49 2.5E-22 T 29-03-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 Y880_RS29535 3847eba0a023d26aed7a4833affc60bb 52 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 7 22 - T 29-03-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 Y880_RS20815 9fbbea950d7d83bea4b3516f1ddde260 484 Pfam PF03573 outer membrane porin, OprD family 62 482 5.3E-123 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS20815 9fbbea950d7d83bea4b3516f1ddde260 484 Gene3D G3DSA:2.40.160.10 13 484 3.6E-114 T 29-03-2018 Y880_RS05305 b3955b2110bacb5cc19f0e4d369fd28f 297 Pfam PF01758 Sodium Bile acid symporter family 12 194 3.5E-33 T 29-03-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Y880_RS03655 8d35fb4644a054036f6911b7d9bbf22c 116 SUPERFAMILY SSF54909 1 116 1.15E-36 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS03655 8d35fb4644a054036f6911b7d9bbf22c 116 Gene3D G3DSA:3.30.70.1060 1 116 6.1E-41 T 29-03-2018 Y880_RS03655 8d35fb4644a054036f6911b7d9bbf22c 116 Pfam PF03795 YCII-related domain 1 116 8.3E-31 T 29-03-2018 IPR005545 YCII-related Y880_RS03260 7ffb3628fea3e63619bf20d8a4c2a15f 612 Gene3D G3DSA:2.40.170.20 160 610 2.6E-69 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03260 7ffb3628fea3e63619bf20d8a4c2a15f 612 Pfam PF00593 TonB dependent receptor 185 610 1.9E-46 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS03260 7ffb3628fea3e63619bf20d8a4c2a15f 612 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 1 611 4.7E-288 T 29-03-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 Y880_RS03260 7ffb3628fea3e63619bf20d8a4c2a15f 612 Gene3D G3DSA:2.170.130.10 20 159 3.5E-36 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS03260 7ffb3628fea3e63619bf20d8a4c2a15f 612 SUPERFAMILY SSF56935 31 609 3.66E-120 T 29-03-2018 Y880_RS03260 7ffb3628fea3e63619bf20d8a4c2a15f 612 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 147 8.3E-30 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS14120 7f13242f0d6ff9c5918bdc172ad6c4b7 270 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 17 231 1.9E-13 T 29-03-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Y880_RS14120 7f13242f0d6ff9c5918bdc172ad6c4b7 270 SUPERFAMILY SSF56300 192 253 9.57E-33 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS14120 7f13242f0d6ff9c5918bdc172ad6c4b7 270 SUPERFAMILY SSF56300 15 136 9.57E-33 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS14120 7f13242f0d6ff9c5918bdc172ad6c4b7 270 Gene3D G3DSA:3.60.21.10 2 261 5.7E-29 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS28145 6a16a763926a27df7b16c4098fbdf5b5 289 SUPERFAMILY SSF161098 3 261 3.36E-50 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28145 6a16a763926a27df7b16c4098fbdf5b5 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 262 1.1E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28145 6a16a763926a27df7b16c4098fbdf5b5 289 Gene3D G3DSA:1.10.3720.10 3 268 2.3E-39 T 29-03-2018 Y880_RS12530 0e023c7715a4be59c87d26449ca2369c 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 72 718 6.8E-90 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 Y880_RS12530 0e023c7715a4be59c87d26449ca2369c 718 Gene3D G3DSA:2.40.170.20 188 718 2.0E-72 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS12530 0e023c7715a4be59c87d26449ca2369c 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 174 2.5E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS12530 0e023c7715a4be59c87d26449ca2369c 718 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 701 718 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site Y880_RS12530 0e023c7715a4be59c87d26449ca2369c 718 Pfam PF00593 TonB dependent receptor 246 716 4.9E-54 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 Y880_RS12530 0e023c7715a4be59c87d26449ca2369c 718 Gene3D G3DSA:2.170.130.10 68 187 1.2E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 Y880_RS12530 0e023c7715a4be59c87d26449ca2369c 718 SUPERFAMILY SSF56935 49 718 3.21E-127 T 29-03-2018 Y880_RS24295 1e36b2d9d54c7ec72352a62dfc494fb6 62 Pfam PF12568 Acetyltransferase (GNAT) domain 2 62 1.8E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS29735 55a95d82ee5c96ab04f1139aac8c7f67 415 SUPERFAMILY SSF161098 189 403 9.94E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS29735 55a95d82ee5c96ab04f1139aac8c7f67 415 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 216 407 2.8E-10 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS29735 55a95d82ee5c96ab04f1139aac8c7f67 415 Gene3D G3DSA:1.10.3720.10 30 413 1.4E-44 T 29-03-2018 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 299 3.9E-116 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 144 6.7E-46 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 5.3E-29 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 5.3E-29 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 5.3E-29 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 5.3E-29 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 5.3E-29 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 297 8.3E-50 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 5.2E-27 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 5.2E-27 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 5.2E-27 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 5.2E-27 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 Gene3D G3DSA:3.40.50.1370 2 159 2.1E-58 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 Gene3D G3DSA:3.40.50.1370 160 301 2.1E-50 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 79.575 T 29-03-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Y880_RS15800 acd0dad31c2287b8f44f8171641f1e87 305 SUPERFAMILY SSF53671 2 300 1.07E-103 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 Gene3D G3DSA:1.10.10.60 291 335 5.8E-16 T 29-03-2018 Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 SMART SM00342 247 329 2.1E-29 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 204 2.9E-45 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 298 313 6.0E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 329 6.0E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 Pfam PF12833 Helix-turn-helix domain 253 331 2.1E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 Gene3D G3DSA:1.10.357.10 144 290 4.3E-4 T 29-03-2018 Y880_RS14100 6554c94f9eb7478b0feaac5f1333eb61 337 SUPERFAMILY SSF46689 283 331 5.38E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 ProSitePatterns PS00789 Chorismate synthase signature 3. 318 334 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 TIGRFAM TIGR00033 aroC: chorismate synthase 10 349 2.6E-140 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 SUPERFAMILY SSF103263 4 354 2.49E-148 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 Pfam PF01264 Chorismate synthase 10 344 2.9E-139 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 Gene3D G3DSA:3.60.150.10 3 357 1.2E-157 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 PIRSF PIRSF001456 3 359 3.5E-140 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 Hamap MF_00300 Chorismate synthase [aroC]. 10 351 37.167 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS05465 9d408bffe2a7c901e1f4e36aa3c957f1 363 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y880_RS02280 5649f455b4d9cee574c3f97f95fb7b39 379 SUPERFAMILY SSF53335 52 371 3.88E-60 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS02280 5649f455b4d9cee574c3f97f95fb7b39 379 Pfam PF05050 Methyltransferase FkbM domain 208 333 1.4E-14 T 29-03-2018 IPR006342 Methyltransferase FkbM Y880_RS02280 5649f455b4d9cee574c3f97f95fb7b39 379 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 206 333 7.1E-29 T 29-03-2018 IPR006342 Methyltransferase FkbM Y880_RS02280 5649f455b4d9cee574c3f97f95fb7b39 379 Gene3D G3DSA:3.40.50.150 182 373 6.3E-31 T 29-03-2018 Y880_RS27390 2b903a8453e8b4899fecb18933fd381e 201 Gene3D G3DSA:2.60.130.10 2 201 1.4E-48 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y880_RS27390 2b903a8453e8b4899fecb18933fd381e 201 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 9 201 7.7E-76 T 29-03-2018 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 Y880_RS27390 2b903a8453e8b4899fecb18933fd381e 201 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 52 80 - T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y880_RS27390 2b903a8453e8b4899fecb18933fd381e 201 SUPERFAMILY SSF49482 5 201 1.28E-57 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y880_RS27390 2b903a8453e8b4899fecb18933fd381e 201 Pfam PF00775 Dioxygenase 39 191 4.7E-13 T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y880_RS20205 4c613851506641db078c23376782665a 109 Gene3D G3DSA:3.30.70.120 1 109 5.8E-25 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Y880_RS20205 4c613851506641db078c23376782665a 109 Pfam PF02641 Uncharacterized ACR, COG1993 6 85 7.6E-14 T 29-03-2018 IPR003793 Domain of unknown function DUF190 Y880_RS20205 4c613851506641db078c23376782665a 109 SUPERFAMILY SSF54913 1 100 3.11E-28 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Y880_RS03810 81321b00a574ad4e8d0315e0b0cfd1eb 168 SUPERFAMILY SSF46785 6 143 2.89E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03810 81321b00a574ad4e8d0315e0b0cfd1eb 168 Gene3D G3DSA:1.10.10.10 1 168 3.0E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03810 81321b00a574ad4e8d0315e0b0cfd1eb 168 Pfam PF01638 HxlR-like helix-turn-helix 20 105 9.1E-19 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type Y880_RS01545 a4f606eab23d6646d7c1fc266ee58f1f 139 Pfam PF09842 Predicted membrane protein (DUF2069) 24 128 4.1E-31 T 29-03-2018 IPR018643 Protein of unknown function DUF2069, membrane Y880_RS02195 be07e366e7fef4b6c911f932c5dccd28 146 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 98 144 2.2E-14 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y880_RS02195 be07e366e7fef4b6c911f932c5dccd28 146 Pfam PF00460 Flagella basal body rod protein 7 34 1.5E-9 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y880_RS02195 be07e366e7fef4b6c911f932c5dccd28 146 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 146 6.5E-49 T 29-03-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 Y880_RS02195 be07e366e7fef4b6c911f932c5dccd28 146 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 SUPERFAMILY SSF51182 40 150 7.65E-12 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 Gene3D G3DSA:1.10.10.60 240 287 1.6E-12 T 29-03-2018 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 Pfam PF02311 AraC-like ligand binding domain 32 161 4.3E-8 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 269 8.2E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 269 285 8.2E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 Gene3D G3DSA:1.10.10.60 177 238 3.5E-6 T 29-03-2018 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 Pfam PF12833 Helix-turn-helix domain 208 286 8.4E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 SUPERFAMILY SSF46689 241 287 8.8E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 Gene3D G3DSA:2.60.120.280 22 174 7.0E-14 T 29-03-2018 Y880_RS27840 dd4365875528b88ed95b255b37a12890 288 SMART SM00342 202 285 3.7E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y880_RS06310 aaf89f0d42765cf83011c9ed8a671ba2 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 2.1E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06310 aaf89f0d42765cf83011c9ed8a671ba2 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 2.1E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06310 aaf89f0d42765cf83011c9ed8a671ba2 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 52 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y880_RS06310 aaf89f0d42765cf83011c9ed8a671ba2 193 SUPERFAMILY SSF48498 77 191 5.56E-36 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS06310 aaf89f0d42765cf83011c9ed8a671ba2 193 SUPERFAMILY SSF46689 3 80 5.13E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 Y880_RS06310 aaf89f0d42765cf83011c9ed8a671ba2 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 52 6.0E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y880_RS06310 aaf89f0d42765cf83011c9ed8a671ba2 193 Gene3D G3DSA:1.10.357.10 2 193 2.1E-36 T 29-03-2018 Y880_RS19380 d377a574e7f36092b08fb3677842dcea 302 Gene3D G3DSA:3.30.360.10 94 230 4.8E-39 T 29-03-2018 Y880_RS19380 d377a574e7f36092b08fb3677842dcea 302 TIGRFAM TIGR01761 thiaz-red: thiazolinyl imide reductase 1 285 1.4E-118 T 29-03-2018 IPR010091 Thiazolinyl imide reductase Y880_RS19380 d377a574e7f36092b08fb3677842dcea 302 SUPERFAMILY SSF51735 2 92 3.48E-6 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS19380 d377a574e7f36092b08fb3677842dcea 302 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 72 5.0E-7 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Y880_RS19380 d377a574e7f36092b08fb3677842dcea 302 Gene3D G3DSA:3.40.50.720 2 93 3.7E-6 T 29-03-2018 Y880_RS11120 2dc11294c152481c1dacf75a6ed09f8a 658 Pfam PF01420 Type I restriction modification DNA specificity domain 365 541 2.8E-8 T 29-03-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Y880_RS11120 2dc11294c152481c1dacf75a6ed09f8a 658 SUPERFAMILY SSF116734 359 553 1.16E-29 T 29-03-2018 Y880_RS11120 2dc11294c152481c1dacf75a6ed09f8a 658 SUPERFAMILY SSF116734 79 270 3.27E-27 T 29-03-2018 Y880_RS11120 2dc11294c152481c1dacf75a6ed09f8a 658 Gene3D G3DSA:3.90.220.20 48 256 3.2E-23 T 29-03-2018 Y880_RS11120 2dc11294c152481c1dacf75a6ed09f8a 658 Gene3D G3DSA:3.90.220.20 259 546 2.5E-25 T 29-03-2018 Y880_RS04220 abdbffa82158c1f057887a2bb7e3f478 419 Pfam PF04536 TPM domain 45 168 7.5E-38 T 29-03-2018 IPR007621 TPM domain Y880_RS27190 450f44bb4e59cec418e5f196abd8ffd1 150 Pfam PF13673 Acetyltransferase (GNAT) domain 46 149 5.3E-15 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS27190 450f44bb4e59cec418e5f196abd8ffd1 150 SUPERFAMILY SSF55729 3 149 2.57E-32 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS27190 450f44bb4e59cec418e5f196abd8ffd1 150 Gene3D G3DSA:3.40.630.30 2 150 4.1E-29 T 29-03-2018 Y880_RS10465 97dc14cc03932d5bd744b6b967ec0c98 324 Gene3D G3DSA:3.40.30.10 40 143 1.7E-26 T 29-03-2018 Y880_RS10465 97dc14cc03932d5bd744b6b967ec0c98 324 PIRSF PIRSF015753 3 313 8.2E-130 T 29-03-2018 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 Y880_RS10465 97dc14cc03932d5bd744b6b967ec0c98 324 SUPERFAMILY SSF47616 172 314 9.61E-37 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS10465 97dc14cc03932d5bd744b6b967ec0c98 324 SUPERFAMILY SSF52833 36 151 7.79E-14 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS10465 97dc14cc03932d5bd744b6b967ec0c98 324 Pfam PF13410 Glutathione S-transferase, C-terminal domain 193 264 1.3E-13 T 29-03-2018 Y880_RS10465 97dc14cc03932d5bd744b6b967ec0c98 324 Pfam PF13409 Glutathione S-transferase, N-terminal domain 52 147 1.5E-21 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS10465 97dc14cc03932d5bd744b6b967ec0c98 324 Gene3D G3DSA:1.20.1050.10 144 293 1.7E-48 T 29-03-2018 Y880_RS22935 d4e10f9685e89a2cd8abb2ae299b160d 207 Gene3D G3DSA:2.40.50.140 33 124 3.4E-8 T 29-03-2018 Y880_RS26050 c277d52d11bc99e593eb88fcd7e21a03 457 SUPERFAMILY SSF63411 24 229 1.45E-27 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y880_RS26050 c277d52d11bc99e593eb88fcd7e21a03 457 Gene3D G3DSA:3.30.830.10 17 242 4.2E-33 T 29-03-2018 Y880_RS26050 c277d52d11bc99e593eb88fcd7e21a03 457 Gene3D G3DSA:3.30.830.10 257 423 1.6E-19 T 29-03-2018 Y880_RS26050 c277d52d11bc99e593eb88fcd7e21a03 457 SUPERFAMILY SSF63411 253 432 2.02E-17 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y880_RS26050 c277d52d11bc99e593eb88fcd7e21a03 457 Pfam PF00675 Insulinase (Peptidase family M16) 36 149 3.8E-14 T 29-03-2018 IPR011765 Peptidase M16, N-terminal Y880_RS26050 c277d52d11bc99e593eb88fcd7e21a03 457 Pfam PF05193 Peptidase M16 inactive domain 193 359 5.0E-16 T 29-03-2018 IPR007863 Peptidase M16, C-terminal Y880_RS08985 af77637df312c178fe39d59e289140bf 399 Gene3D G3DSA:3.40.190.10 143 356 3.0E-30 T 29-03-2018 Y880_RS08985 af77637df312c178fe39d59e289140bf 399 SUPERFAMILY SSF53213 285 359 5.49E-5 T 29-03-2018 Y880_RS08985 af77637df312c178fe39d59e289140bf 399 Pfam PF13379 NMT1-like family 38 279 4.1E-44 T 29-03-2018 Y880_RS08985 af77637df312c178fe39d59e289140bf 399 Gene3D G3DSA:3.40.190.10 37 142 2.6E-12 T 29-03-2018 Y880_RS08985 af77637df312c178fe39d59e289140bf 399 SUPERFAMILY SSF53850 42 276 8.54E-35 T 29-03-2018 Y880_RS02480 b623f9b0f1e58ee6a6cffba1b42da199 190 Pfam PF13689 Domain of unknown function (DUF4154) 48 185 1.6E-32 T 29-03-2018 IPR025293 Protein of unknown function DUF4154 Y880_RS04540 2257b730ccedd69223f7343a2ebcfa78 169 Gene3D G3DSA:2.60.120.480 2 169 1.3E-55 T 29-03-2018 IPR024060 Ureidoglycolate lyase domain GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y880_RS04540 2257b730ccedd69223f7343a2ebcfa78 169 PIRSF PIRSF017306 2 162 1.6E-49 T 29-03-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y880_RS04540 2257b730ccedd69223f7343a2ebcfa78 169 SUPERFAMILY SSF51182 1 162 3.47E-58 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS04540 2257b730ccedd69223f7343a2ebcfa78 169 Hamap MF_00616 Ureidoglycolate lyase [allA]. 2 163 42.469 T 29-03-2018 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y880_RS04540 2257b730ccedd69223f7343a2ebcfa78 169 Pfam PF04115 Ureidoglycolate lyase 2 158 2.9E-53 T 29-03-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y880_RS23535 7a2edeeed5de0960c5f40bb95411c9f1 401 Pfam PF04932 O-Antigen ligase 198 322 1.2E-10 T 29-03-2018 IPR007016 O-antigen ligase-related Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 Pfam PF02119 Flagellar P-ring protein 24 368 4.0E-146 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 24 39 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 59 74 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 39 54 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 86 105 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 192 210 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 166 184 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 108 125 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 256 268 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 125 143 8.1E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS02225 cbce50df8ac4bf39b0cd4b546dcbc6af 369 Hamap MF_00416 Flagellar P-ring protein [flgI]. 6 369 42.04 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y880_RS00550 4c7ddf042d9c0a14b550a0fd71b540cb 387 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 240 348 1.6E-17 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS00550 4c7ddf042d9c0a14b550a0fd71b540cb 387 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 23 54 1.6E-6 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS00550 4c7ddf042d9c0a14b550a0fd71b540cb 387 Gene3D G3DSA:3.40.50.300 11 366 4.5E-23 T 29-03-2018 Y880_RS00550 4c7ddf042d9c0a14b550a0fd71b540cb 387 PIRSF PIRSF029347 1 387 6.4E-172 T 29-03-2018 IPR014555 RecF-like Y880_RS00550 4c7ddf042d9c0a14b550a0fd71b540cb 387 SUPERFAMILY SSF52540 224 350 1.15E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS00550 4c7ddf042d9c0a14b550a0fd71b540cb 387 SUPERFAMILY SSF52540 1 100 1.15E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS03275 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 SUPERFAMILY SSF55469 8 216 4.06E-47 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS03275 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 8 209 3.0E-73 T 29-03-2018 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 Y880_RS03275 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 Pfam PF00881 Nitroreductase family 20 183 2.5E-26 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y880_RS03275 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 Gene3D G3DSA:3.40.109.10 1 210 2.0E-39 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS20435 8aa28c0c74b1e3e9646da0cb6288190b 192 SMART SM00749 53 116 0.019 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria Y880_RS20435 8aa28c0c74b1e3e9646da0cb6288190b 192 SMART SM00749 130 191 0.093 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria Y880_RS20435 8aa28c0c74b1e3e9646da0cb6288190b 192 Pfam PF04972 BON domain 125 190 1.9E-17 T 29-03-2018 IPR007055 BON domain Y880_RS20435 8aa28c0c74b1e3e9646da0cb6288190b 192 Pfam PF04972 BON domain 46 115 8.3E-12 T 29-03-2018 IPR007055 BON domain Y880_RS27340 3841f6d791c3cd3bda2d7be0daa7b05a 208 SUPERFAMILY SSF52309 40 199 1.13E-45 T 29-03-2018 Y880_RS27340 3841f6d791c3cd3bda2d7be0daa7b05a 208 Gene3D G3DSA:3.40.50.450 33 208 7.5E-39 T 29-03-2018 Y880_RS27340 3841f6d791c3cd3bda2d7be0daa7b05a 208 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 42 183 1.0E-48 T 29-03-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase GO:0009159|GO:0050144|GO:0070694 Reactome: R-HSA-74259 Y880_RS13970 c2ba94213e72e9c8f5c90d83a5eb18f2 92 SUPERFAMILY SSF52980 2 60 5.9E-11 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y880_RS13970 c2ba94213e72e9c8f5c90d83a5eb18f2 92 Pfam PF04480 Protein of unknown function (DUF559) 1 58 3.1E-23 T 29-03-2018 IPR007569 Domain of unknown function DUF559 Y880_RS13970 c2ba94213e72e9c8f5c90d83a5eb18f2 92 Gene3D G3DSA:3.40.960.10 5 82 1.6E-14 T 29-03-2018 Y880_RS28140 bcb7dd3d527a5cb321f805186d890619 293 SUPERFAMILY SSF161098 5 283 5.63E-56 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28140 bcb7dd3d527a5cb321f805186d890619 293 Gene3D G3DSA:1.10.3720.10 6 287 2.3E-42 T 29-03-2018 Y880_RS28140 bcb7dd3d527a5cb321f805186d890619 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 279 5.5E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 Pfam PF03466 LysR substrate binding domain 89 296 8.3E-32 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 SUPERFAMILY SSF53850 91 297 6.98E-32 T 29-03-2018 Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 SUPERFAMILY SSF46785 1 86 1.26E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.2E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 Gene3D G3DSA:3.40.190.10 86 182 9.2E-18 T 29-03-2018 Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 Gene3D G3DSA:1.10.10.10 1 85 4.5E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS27570 03c12d72b0d803b556e990742e32c774 305 Gene3D G3DSA:3.40.190.10 183 265 2.4E-8 T 29-03-2018 Y880_RS18105 3b4b175ddf370e392a4ceb4d5d1fcf3a 143 SUPERFAMILY SSF54637 6 139 2.49E-28 T 29-03-2018 IPR029069 HotDog domain Y880_RS18105 3b4b175ddf370e392a4ceb4d5d1fcf3a 143 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 135 7.8E-18 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y880_RS18105 3b4b175ddf370e392a4ceb4d5d1fcf3a 143 Gene3D G3DSA:3.10.129.10 1 141 9.3E-27 T 29-03-2018 Y880_RS18105 3b4b175ddf370e392a4ceb4d5d1fcf3a 143 Pfam PF03061 Thioesterase superfamily 50 124 3.2E-16 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS04805 ec31775e5d1cf902f3e41bef1b171559 61 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 9 45 3.1E-9 T 29-03-2018 IPR008621 Cbb3-type cytochrome oxidase component Y880_RS26825 bbdd8b365135ba22ea6075a1d1de996c 469 Pfam PF13194 Domain of unknown function (DUF4010) 236 444 7.2E-62 T 29-03-2018 IPR025105 Domain of unknown function DUF4010 Y880_RS26825 bbdd8b365135ba22ea6075a1d1de996c 469 Pfam PF02308 MgtC family 63 188 2.5E-18 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y880_RS24900 ffd78955eccd4c5d8fe97c16dcce5242 376 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 31 358 4.4E-98 T 29-03-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX Y880_RS10520 ca47877d37aab3ee5589634c9a30f103 122 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 39 117 1.2E-34 T 29-03-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 Y880_RS10520 ca47877d37aab3ee5589634c9a30f103 122 SUPERFAMILY SSF54736 37 120 8.37E-33 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y880_RS10520 ca47877d37aab3ee5589634c9a30f103 122 Gene3D G3DSA:3.30.1390.10 28 120 1.3E-36 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y880_RS10520 ca47877d37aab3ee5589634c9a30f103 122 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 17 116 29.359 T 29-03-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS Y880_RS11805 0e3bc8c67b39edb9fca70ba362196cc6 369 Gene3D G3DSA:3.40.50.150 7 263 2.0E-19 T 29-03-2018 Y880_RS11805 0e3bc8c67b39edb9fca70ba362196cc6 369 SUPERFAMILY SSF53335 18 189 1.16E-22 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS11805 0e3bc8c67b39edb9fca70ba362196cc6 369 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 104 110 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y880_RS11805 0e3bc8c67b39edb9fca70ba362196cc6 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 130 154 2.0E-8 T 29-03-2018 Y880_RS11805 0e3bc8c67b39edb9fca70ba362196cc6 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 41 55 2.0E-8 T 29-03-2018 Y880_RS11805 0e3bc8c67b39edb9fca70ba362196cc6 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 101 113 2.0E-8 T 29-03-2018 Y880_RS11115 da797e199af840d65bc78179a3fc08a0 583 Gene3D G3DSA:3.40.50.300 1 472 3.2E-23 T 29-03-2018 Y880_RS11115 da797e199af840d65bc78179a3fc08a0 583 SUPERFAMILY SSF52540 342 460 3.99E-20 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11115 da797e199af840d65bc78179a3fc08a0 583 SUPERFAMILY SSF52540 1 148 3.99E-20 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS11115 da797e199af840d65bc78179a3fc08a0 583 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 335 439 1.2E-11 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 1.9E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 1.9E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 1.9E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 SUPERFAMILY SSF46785 9 150 3.44E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 ProSitePatterns PS01117 MarR-type HTH domain signature. 74 108 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 SMART SM00347 35 135 3.6E-15 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 Pfam PF12802 MarR family 41 98 1.5E-11 T 29-03-2018 Y880_RS12015 9ea136c9e0ae2edf8d99db716711167f 166 Gene3D G3DSA:1.10.10.10 11 149 4.6E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS04170 e152b543b93426c114077ef7ec7bf341 194 SUPERFAMILY SSF101327 9 181 2.35E-19 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 Y880_RS04170 e152b543b93426c114077ef7ec7bf341 194 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 181 2.3E-32 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 Y880_RS04170 e152b543b93426c114077ef7ec7bf341 194 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 7 179 8.4E-44 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 Y880_RS11310 6254d8eb5766cc47d494be25ee825e84 114 Pfam PF05899 Protein of unknown function (DUF861) 39 111 6.2E-28 T 29-03-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y880_RS11310 6254d8eb5766cc47d494be25ee825e84 114 Gene3D G3DSA:2.60.120.10 10 114 2.8E-12 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS11310 6254d8eb5766cc47d494be25ee825e84 114 SUPERFAMILY SSF51182 16 113 1.69E-20 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS26385 2e136b8db882e271d05b05fcdcb3195b 298 Pfam PF02649 Type I GTP cyclohydrolase folE2 6 289 7.6E-68 T 29-03-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Y880_RS26385 2e136b8db882e271d05b05fcdcb3195b 298 Gene3D G3DSA:3.10.270.10 5 292 6.4E-82 T 29-03-2018 Y880_RS26385 2e136b8db882e271d05b05fcdcb3195b 298 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 6 294 32.487 T 29-03-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Y880_RS26720 aef3109182e3d2c5d3e75759e22e77c3 428 Gene3D G3DSA:3.10.50.40 282 412 2.4E-10 T 29-03-2018 Y880_RS26720 aef3109182e3d2c5d3e75759e22e77c3 428 Pfam PF13145 PPIC-type PPIASE domain 271 391 2.9E-6 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 Y880_RS26720 aef3109182e3d2c5d3e75759e22e77c3 428 SUPERFAMILY SSF54534 292 383 9.81E-11 T 29-03-2018 Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 SUPERFAMILY SSF52777 155 368 6.23E-55 T 29-03-2018 Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 163 369 4.9E-47 T 29-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 Gene3D G3DSA:4.10.320.10 102 150 7.5E-16 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 SUPERFAMILY SSF47005 112 153 8.5E-10 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 Gene3D G3DSA:2.40.50.100 4 75 8.8E-16 T 29-03-2018 Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 Pfam PF02817 e3 binding domain 115 149 2.6E-13 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 Pfam PF00364 Biotin-requiring enzyme 3 73 1.6E-19 T 29-03-2018 IPR000089 Biotin/lipoyl attachment Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 SUPERFAMILY SSF51230 2 84 1.44E-24 T 29-03-2018 IPR011053 Single hybrid motif Y880_RS15190 2b9126eee20b9fc87d0b4522397e0a96 370 Gene3D G3DSA:3.30.559.10 151 370 8.5E-49 T 29-03-2018 Y880_RS05120 edcbd1adab4f8e96405e961fbc277879 154 Gene3D G3DSA:3.40.50.1240 1 153 2.0E-23 T 29-03-2018 IPR029033 Histidine phosphatase superfamily Y880_RS05120 edcbd1adab4f8e96405e961fbc277879 154 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 2 136 1.2E-26 T 29-03-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 Y880_RS05120 edcbd1adab4f8e96405e961fbc277879 154 SUPERFAMILY SSF53254 2 136 2.91E-23 T 29-03-2018 IPR029033 Histidine phosphatase superfamily Y880_RS05120 edcbd1adab4f8e96405e961fbc277879 154 SMART SM00855 2 110 3.4E-9 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y880_RS05120 edcbd1adab4f8e96405e961fbc277879 154 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 69 6.1E-14 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y880_RS13040 8f873f4603257b381908671416a89ad2 161 Gene3D G3DSA:3.40.50.300 43 161 1.5E-17 T 29-03-2018 Y880_RS13040 8f873f4603257b381908671416a89ad2 161 SUPERFAMILY SSF52540 45 159 1.59E-29 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS13040 8f873f4603257b381908671416a89ad2 161 Pfam PF03846 Cell division inhibitor SulA 47 133 2.3E-8 T 29-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 Y880_RS19415 d353350dc30356d96ec81757c21d5a14 476 Pfam PF00425 chorismate binding enzyme 200 452 2.0E-73 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y880_RS19415 d353350dc30356d96ec81757c21d5a14 476 SUPERFAMILY SSF56322 33 460 1.83E-100 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS19415 d353350dc30356d96ec81757c21d5a14 476 Gene3D G3DSA:3.60.120.10 46 463 8.3E-95 T 29-03-2018 IPR005801 ADC synthase GO:0009058 Y880_RS19415 d353350dc30356d96ec81757c21d5a14 476 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 108 460 3.6E-122 T 29-03-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 Y880_RS15490 2e819e29c9590a305be45c282c324fc3 299 SUPERFAMILY SSF103481 182 287 9.42E-9 T 29-03-2018 Y880_RS15490 2e819e29c9590a305be45c282c324fc3 299 SUPERFAMILY SSF103481 45 147 9.15E-7 T 29-03-2018 Y880_RS15490 2e819e29c9590a305be45c282c324fc3 299 TIGRFAM TIGR00688 rarD: protein RarD 6 260 7.8E-55 T 29-03-2018 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 Y880_RS12720 baa2f917b9b5ddc1ce1e24eac752cc68 233 TIGRFAM TIGR02458 CbtA: cobalt transporter subunit CbtA (proposed) 1 226 1.9E-95 T 29-03-2018 IPR012666 Cobalt transporter subunit CbtA, putative Y880_RS12720 baa2f917b9b5ddc1ce1e24eac752cc68 233 Gene3D G3DSA:1.20.1250.20 5 134 0.0057 T 29-03-2018 Y880_RS12720 baa2f917b9b5ddc1ce1e24eac752cc68 233 Gene3D G3DSA:1.20.1250.20 135 229 0.016 T 29-03-2018 Y880_RS12720 baa2f917b9b5ddc1ce1e24eac752cc68 233 Pfam PF09490 Probable cobalt transporter subunit (CbtA) 2 224 2.5E-67 T 29-03-2018 IPR012666 Cobalt transporter subunit CbtA, putative Y880_RS23135 3464a94b9bdd9bc82415b6415e45cf4a 231 Gene3D G3DSA:2.70.70.10 94 230 2.0E-33 T 29-03-2018 Y880_RS23135 3464a94b9bdd9bc82415b6415e45cf4a 231 SMART SM00257 35 79 3.5E-11 T 29-03-2018 IPR018392 LysM domain Y880_RS23135 3464a94b9bdd9bc82415b6415e45cf4a 231 Pfam PF01476 LysM domain 36 76 3.1E-14 T 29-03-2018 IPR018392 LysM domain Y880_RS23135 3464a94b9bdd9bc82415b6415e45cf4a 231 Pfam PF01551 Peptidase family M23 131 224 2.9E-27 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS23135 3464a94b9bdd9bc82415b6415e45cf4a 231 Gene3D G3DSA:3.10.350.10 18 93 8.3E-15 T 29-03-2018 Y880_RS23135 3464a94b9bdd9bc82415b6415e45cf4a 231 SUPERFAMILY SSF51261 36 228 4.5E-45 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS26445 a3d17e34b93738c1df197bcd636c7c9d 476 Gene3D G3DSA:1.10.630.10 70 464 2.0E-24 T 29-03-2018 Y880_RS26445 a3d17e34b93738c1df197bcd636c7c9d 476 Pfam PF00067 Cytochrome P450 194 449 8.3E-8 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS26445 a3d17e34b93738c1df197bcd636c7c9d 476 SUPERFAMILY SSF48264 104 469 8.91E-23 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS01875 5e9bb55b0c8f66ce534a270a5cbeaacd 288 SUPERFAMILY SSF54637 9 159 1.05E-37 T 29-03-2018 IPR029069 HotDog domain Y880_RS01875 5e9bb55b0c8f66ce534a270a5cbeaacd 288 Gene3D G3DSA:3.10.129.10 14 162 1.4E-33 T 29-03-2018 Y880_RS01875 5e9bb55b0c8f66ce534a270a5cbeaacd 288 Pfam PF01575 MaoC like domain 165 272 3.2E-26 T 29-03-2018 IPR002539 MaoC-like domain Y880_RS01875 5e9bb55b0c8f66ce534a270a5cbeaacd 288 Pfam PF13452 N-terminal half of MaoC dehydratase 51 130 5.7E-8 T 29-03-2018 Y880_RS01875 5e9bb55b0c8f66ce534a270a5cbeaacd 288 SUPERFAMILY SSF54637 163 277 7.48E-28 T 29-03-2018 IPR029069 HotDog domain Y880_RS01875 5e9bb55b0c8f66ce534a270a5cbeaacd 288 Gene3D G3DSA:3.10.129.10 163 280 5.9E-26 T 29-03-2018 Y880_RS25630 6ab01b69bbe57852e6852e9f863dd24b 325 Gene3D G3DSA:3.20.20.140 2 325 2.2E-84 T 29-03-2018 Y880_RS25630 6ab01b69bbe57852e6852e9f863dd24b 325 SUPERFAMILY SSF51556 9 324 1.36E-82 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS25630 6ab01b69bbe57852e6852e9f863dd24b 325 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 6 320 3.0E-93 T 29-03-2018 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 Y880_RS08885 d81643399d543ce553a476c9aabdb29d 282 SUPERFAMILY SSF52540 17 230 3.88E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS08885 d81643399d543ce553a476c9aabdb29d 282 Gene3D G3DSA:3.40.50.300 13 255 1.1E-59 T 29-03-2018 Y880_RS08885 d81643399d543ce553a476c9aabdb29d 282 SMART SM00382 45 226 4.9E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS08885 d81643399d543ce553a476c9aabdb29d 282 Pfam PF00005 ABC transporter 37 178 1.0E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS08885 d81643399d543ce553a476c9aabdb29d 282 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS27435 8e1e434ca60d5ad8928598f832541be9 444 Gene3D G3DSA:2.40.160.10 2 444 1.6E-118 T 29-03-2018 Y880_RS27435 8e1e434ca60d5ad8928598f832541be9 444 Pfam PF03573 outer membrane porin, OprD family 29 442 1.2E-151 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS13670 a233378be42a38fcb13e8b3c43a94dc2 319 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 314 53.856 T 29-03-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 Y880_RS13670 a233378be42a38fcb13e8b3c43a94dc2 319 PIRSF PIRSF006621 1 319 5.8E-76 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS13670 a233378be42a38fcb13e8b3c43a94dc2 319 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 29-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS13670 a233378be42a38fcb13e8b3c43a94dc2 319 SUPERFAMILY SSF51395 3 311 4.21E-69 T 29-03-2018 Y880_RS13670 a233378be42a38fcb13e8b3c43a94dc2 319 Gene3D G3DSA:3.20.20.70 1 241 3.8E-43 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS13670 a233378be42a38fcb13e8b3c43a94dc2 319 Pfam PF01207 Dihydrouridine synthase (Dus) 5 242 2.2E-64 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y880_RS21500 05e6d2d6b57c870476b7753c857be03d 487 Pfam PF00324 Amino acid permease 20 476 4.6E-138 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS21500 05e6d2d6b57c870476b7753c857be03d 487 PIRSF PIRSF006060 2 484 8.5E-80 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS21500 05e6d2d6b57c870476b7753c857be03d 487 ProSitePatterns PS00218 Amino acid permeases signature. 45 76 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS27100 4a08db4d4cc651708a84847f9f78bcdd 345 SUPERFAMILY SSF53901 7 197 5.19E-9 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27100 4a08db4d4cc651708a84847f9f78bcdd 345 Gene3D G3DSA:3.40.47.10 33 193 2.3E-9 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27100 4a08db4d4cc651708a84847f9f78bcdd 345 Gene3D G3DSA:3.40.47.10 194 341 9.4E-5 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS27100 4a08db4d4cc651708a84847f9f78bcdd 345 SUPERFAMILY SSF53901 182 317 6.38E-10 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS17670 d7b18f6228a636d41f91673eec0835f9 220 Gene3D G3DSA:1.10.3720.10 10 213 1.2E-30 T 29-03-2018 Y880_RS17670 d7b18f6228a636d41f91673eec0835f9 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 213 6.1E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS17670 d7b18f6228a636d41f91673eec0835f9 220 SUPERFAMILY SSF161098 12 203 4.84E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 SUPERFAMILY SSF52172 1 184 1.57E-45 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 Gene3D G3DSA:1.10.10.10 141 186 6.2E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 SMART SM00448 2 113 2.6E-10 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 Pfam PF00072 Response regulator receiver domain 4 110 4.8E-9 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 PIRSF PIRSF036382 1 191 2.0E-66 T 29-03-2018 IPR008327 Signal transduction response regulator, antiterminator Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 Pfam PF03861 ANTAR domain 133 184 1.5E-16 T 29-03-2018 IPR005561 ANTAR domain GO:0003723 Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 Gene3D G3DSA:3.40.50.2300 1 140 6.9E-18 T 29-03-2018 Y880_RS06015 6dc076ee8ead2c86dfef4f876fdecaee 192 SMART SM01012 129 184 2.3E-19 T 29-03-2018 IPR005561 ANTAR domain GO:0003723 Y880_RS28010 7f74e30d601f9497151c1a41869c573d 252 Gene3D G3DSA:3.30.2010.10 32 148 7.7E-19 T 29-03-2018 Y880_RS28010 7f74e30d601f9497151c1a41869c573d 252 Pfam PF01435 Peptidase family M48 73 246 2.5E-25 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y880_RS23410 6818520878291142bc0bd8a3d0ad829c 393 Gene3D G3DSA:3.40.640.10 55 272 1.7E-54 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS23410 6818520878291142bc0bd8a3d0ad829c 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y880_RS23410 6818520878291142bc0bd8a3d0ad829c 393 SUPERFAMILY SSF53383 15 383 1.22E-111 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS23410 6818520878291142bc0bd8a3d0ad829c 393 Pfam PF00155 Aminotransferase class I and II 33 382 1.8E-71 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS23410 6818520878291142bc0bd8a3d0ad829c 393 Gene3D G3DSA:3.90.1150.10 273 390 2.6E-30 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS28610 c88ca0dea88af878bd91e67f2d6f40af 655 Gene3D G3DSA:3.40.50.300 39 649 1.0E-30 T 29-03-2018 Y880_RS28610 c88ca0dea88af878bd91e67f2d6f40af 655 Pfam PF00350 Dynamin family 59 273 2.3E-12 T 29-03-2018 IPR022812 Dynamin superfamily Y880_RS28610 c88ca0dea88af878bd91e67f2d6f40af 655 SUPERFAMILY SSF52540 44 113 3.02E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28610 c88ca0dea88af878bd91e67f2d6f40af 655 SUPERFAMILY SSF52540 187 318 3.02E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS28705 d96f290186cd04b6121a312428ab3a72 121 SMART SM00448 2 115 3.4E-39 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS28705 d96f290186cd04b6121a312428ab3a72 121 Gene3D G3DSA:3.40.50.2300 1 121 1.7E-38 T 29-03-2018 Y880_RS28705 d96f290186cd04b6121a312428ab3a72 121 SUPERFAMILY SSF52172 1 120 9.53E-39 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS28705 d96f290186cd04b6121a312428ab3a72 121 Pfam PF00072 Response regulator receiver domain 4 116 3.8E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS12590 87b64b4109d905cadd2073e2248efe48 261 SUPERFAMILY SSF53850 26 258 2.32E-60 T 29-03-2018 Y880_RS12590 87b64b4109d905cadd2073e2248efe48 261 SMART SM00062 27 256 2.0E-62 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS12590 87b64b4109d905cadd2073e2248efe48 261 Gene3D G3DSA:3.40.190.10 16 139 3.1E-33 T 29-03-2018 Y880_RS12590 87b64b4109d905cadd2073e2248efe48 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 2.0E-57 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS12590 87b64b4109d905cadd2073e2248efe48 261 Gene3D G3DSA:3.40.190.10 140 209 5.1E-14 T 29-03-2018 Y880_RS14795 1fc6fa6a49cd1d7467c33dea521d8fc2 338 Pfam PF10974 Protein of unknown function (DUF2804) 8 337 3.5E-81 T 29-03-2018 IPR021243 Protein of unknown function DUF2804 Y880_RS16815 7c0c5517563aa222605769d1811d931e 206 Pfam PF09938 Uncharacterized protein conserved in bacteria (DUF2170) 66 202 1.7E-50 T 29-03-2018 IPR019231 Protein of unknown function DUF2170 Y880_RS13315 41cf02b2533c7c9a8f8da7983eb12ca9 329 Gene3D G3DSA:1.25.40.10 212 308 1.1E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS13315 41cf02b2533c7c9a8f8da7983eb12ca9 329 Gene3D G3DSA:1.25.40.70 126 199 4.7E-4 T 29-03-2018 Y880_RS02575 fbbd8fae323a5f2312dd00baa49598dc 282 Pfam PF00188 Cysteine-rich secretory protein family 152 279 3.0E-20 T 29-03-2018 IPR014044 CAP domain Y880_RS02575 fbbd8fae323a5f2312dd00baa49598dc 282 Gene3D G3DSA:3.40.33.10 18 101 0.17 T 29-03-2018 IPR014044 CAP domain Y880_RS02575 fbbd8fae323a5f2312dd00baa49598dc 282 SUPERFAMILY SSF55797 145 280 5.23E-22 T 29-03-2018 IPR014044 CAP domain Y880_RS02575 fbbd8fae323a5f2312dd00baa49598dc 282 Gene3D G3DSA:3.40.33.10 143 280 2.7E-15 T 29-03-2018 IPR014044 CAP domain Y880_RS16975 367df82fe6933921e0dad04abc7439fe 105 Gene3D G3DSA:3.30.70.120 1 103 2.8E-43 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Y880_RS16975 367df82fe6933921e0dad04abc7439fe 105 SUPERFAMILY SSF102705 2 101 5.1E-23 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Y880_RS14180 86c4218aa21e7b0df586681c56afae97 52 Pfam PF11752 Protein of unknown function (DUF3309) 4 52 4.5E-21 T 29-03-2018 IPR021738 Protein of unknown function DUF3309 Y880_RS28490 ec0c21d7f1c9a05a6a841c68bb670351 136 Gene3D G3DSA:3.40.630.30 10 131 6.4E-18 T 29-03-2018 Y880_RS28490 ec0c21d7f1c9a05a6a841c68bb670351 136 Pfam PF00583 Acetyltransferase (GNAT) family 40 119 3.2E-7 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS28490 ec0c21d7f1c9a05a6a841c68bb670351 136 SUPERFAMILY SSF55729 12 119 5.32E-16 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS25575 d48a217240ce775aea60b49425cd9cad 159 Gene3D G3DSA:3.10.129.10 1 140 2.5E-21 T 29-03-2018 Y880_RS25575 d48a217240ce775aea60b49425cd9cad 159 Pfam PF13279 Thioesterase-like superfamily 12 129 1.5E-18 T 29-03-2018 Y880_RS25575 d48a217240ce775aea60b49425cd9cad 159 SUPERFAMILY SSF54637 6 156 1.1E-45 T 29-03-2018 IPR029069 HotDog domain Y880_RS05920 021baa9421d6f31dbb048a4d89abeab7 508 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 260 505 1.2E-94 T 29-03-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase Y880_RS05920 021baa9421d6f31dbb048a4d89abeab7 508 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 25 184 8.2E-47 T 29-03-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices Y880_RS13355 4d930733b6c105f88d2d8413ceb92c3a 312 Gene3D G3DSA:3.40.50.410 61 276 7.8E-18 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS13355 4d930733b6c105f88d2d8413ceb92c3a 312 Pfam PF01882 Protein of unknown function DUF58 49 133 2.0E-20 T 29-03-2018 IPR002881 Domain of unknown function DUF58 Y880_RS23645 9bfc3adb9268df1dfb75269e1d709575 278 Gene3D G3DSA:3.40.50.150 1 278 5.6E-87 T 29-03-2018 Y880_RS23645 9bfc3adb9268df1dfb75269e1d709575 278 SUPERFAMILY SSF53335 8 274 9.38E-90 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS23645 9bfc3adb9268df1dfb75269e1d709575 278 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 276 2.6E-112 T 29-03-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Y880_RS23645 9bfc3adb9268df1dfb75269e1d709575 278 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 265 39.858 T 29-03-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Y880_RS02730 72091c21c39aaef386ef1c3b7a52902d 244 Pfam PF03741 Integral membrane protein TerC family 16 186 3.8E-44 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y880_RS02730 72091c21c39aaef386ef1c3b7a52902d 244 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 187 2.5E-70 T 29-03-2018 IPR022301 Integral membrane protein YjbE Y880_RS29260 02423319e9c42261a2faa503be21927e 174 Gene3D G3DSA:3.30.70.920 59 162 1.3E-15 T 29-03-2018 Y880_RS19865 04b9d19fdd594cf33c520b0519e22563 480 SUPERFAMILY SSF53098 7 453 9.34E-124 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS19865 04b9d19fdd594cf33c520b0519e22563 480 Gene3D G3DSA:3.30.420.10 2 196 3.2E-29 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS19865 04b9d19fdd594cf33c520b0519e22563 480 PIRSF PIRSF000977 1 477 4.1E-202 T 29-03-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 Y880_RS19865 04b9d19fdd594cf33c520b0519e22563 480 Pfam PF00929 Exonuclease 9 188 7.1E-25 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS19865 04b9d19fdd594cf33c520b0519e22563 480 Pfam PF08411 Exonuclease C-terminal 207 470 3.8E-96 T 29-03-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 Y880_RS19865 04b9d19fdd594cf33c520b0519e22563 480 SMART SM00479 6 198 3.9E-4 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y880_RS10355 418cd127557bae3b6d39a0f13d075e49 404 Gene3D G3DSA:1.20.1250.20 211 402 2.8E-19 T 29-03-2018 Y880_RS10355 418cd127557bae3b6d39a0f13d075e49 404 Gene3D G3DSA:1.20.1250.20 8 195 7.5E-21 T 29-03-2018 Y880_RS10355 418cd127557bae3b6d39a0f13d075e49 404 Pfam PF07690 Major Facilitator Superfamily 28 362 1.5E-38 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS10355 418cd127557bae3b6d39a0f13d075e49 404 SUPERFAMILY SSF103473 17 402 5.23E-50 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 349 431 2.5E-24 T 29-03-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 182 197 - T 29-03-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 359 370 - T 29-03-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 SUPERFAMILY SSF142019 26 253 4.71E-86 T 29-03-2018 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 SMART SM00928 346 391 2.8E-21 T 29-03-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 21 433 1.3E-196 T 29-03-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 SUPERFAMILY SSF140490 343 436 1.24E-29 T 29-03-2018 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 62 234 1.3E-51 T 29-03-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10625 482c51f123f356fbf8d5ff87b70a3681 445 SUPERFAMILY SSF142984 258 341 8.89E-19 T 29-03-2018 Y880_RS21125 1bd17f9890f7937001024c2439d3e9e6 146 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 8 141 1.4E-23 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y880_RS21125 1bd17f9890f7937001024c2439d3e9e6 146 SUPERFAMILY SSF54534 9 143 4.71E-40 T 29-03-2018 Y880_RS21125 1bd17f9890f7937001024c2439d3e9e6 146 Gene3D G3DSA:3.10.50.40 5 146 3.5E-25 T 29-03-2018 Y880_RS26360 fa0b835575c3147400fa3f1762f14f4e 213 Pfam PF08856 Protein of unknown function (DUF1826) 17 210 3.8E-65 T 29-03-2018 IPR014955 Protein of unknown function DUF1826 Y880_RS25160 5f12e4b6573d8063f50dca0670af01fa 439 Gene3D G3DSA:3.50.50.60 28 409 3.7E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25160 5f12e4b6573d8063f50dca0670af01fa 439 SUPERFAMILY SSF51905 354 431 4.1E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25160 5f12e4b6573d8063f50dca0670af01fa 439 SUPERFAMILY SSF51905 38 262 4.1E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS25160 5f12e4b6573d8063f50dca0670af01fa 439 Pfam PF01266 FAD dependent oxidoreductase 39 392 1.8E-57 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS09145 a62e419e390ee7bff4aabf54f369a6d0 366 Pfam PF06812 ImpA, N-terminal, type VI secretion system 16 138 1.4E-37 T 29-03-2018 IPR010657 ImpA, N-terminal Y880_RS09145 a62e419e390ee7bff4aabf54f369a6d0 366 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 11 363 3.5E-125 T 29-03-2018 IPR017740 Type VI secretion system-associated, ImpA Y880_RS17435 25b4244a5277cb3088d4988a79d82d36 203 SUPERFAMILY SSF52833 1 95 3.53E-17 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS17435 25b4244a5277cb3088d4988a79d82d36 203 Gene3D G3DSA:3.40.30.10 1 88 5.7E-18 T 29-03-2018 Y880_RS17435 25b4244a5277cb3088d4988a79d82d36 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 75 2.6E-20 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y880_RS17435 25b4244a5277cb3088d4988a79d82d36 203 Gene3D G3DSA:1.20.1050.10 89 202 6.7E-11 T 29-03-2018 Y880_RS17435 25b4244a5277cb3088d4988a79d82d36 203 SUPERFAMILY SSF47616 69 200 1.2E-7 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like Y880_RS10285 27b0490b470228bec3dde738605fa33c 196 Pfam PF02525 Flavodoxin-like fold 2 188 4.7E-35 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS10285 27b0490b470228bec3dde738605fa33c 196 SUPERFAMILY SSF52218 1 193 9.92E-40 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS10285 27b0490b470228bec3dde738605fa33c 196 Gene3D G3DSA:3.40.50.360 1 195 5.0E-32 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS29195 110938e2bd63ff10bdfe6ed45ae0f625 240 Gene3D G3DSA:3.40.50.1820 2 237 5.5E-27 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29195 110938e2bd63ff10bdfe6ed45ae0f625 240 SUPERFAMILY SSF53474 5 236 6.1E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29195 110938e2bd63ff10bdfe6ed45ae0f625 240 Pfam PF12697 Alpha/beta hydrolase family 20 228 4.3E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS06315 98c9e377505fd3b416e7d01502f92fad 165 PIRSF PIRSF030820 1 165 2.2E-67 T 29-03-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y880_RS06315 98c9e377505fd3b416e7d01502f92fad 165 Pfam PF06073 Bacterial protein of unknown function (DUF934) 55 161 4.6E-46 T 29-03-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y880_RS13320 7540c4d12e42c2c2d4a75a8d5e91de29 455 Pfam PF13185 GAF domain 179 308 6.7E-7 T 29-03-2018 IPR003018 GAF domain GO:0005515 Y880_RS13320 7540c4d12e42c2c2d4a75a8d5e91de29 455 Pfam PF16963 PelD GGDEF domain 321 444 3.6E-35 T 29-03-2018 IPR031583 PelD, GGDEF domain Y880_RS13320 7540c4d12e42c2c2d4a75a8d5e91de29 455 Gene3D G3DSA:3.30.450.40 155 319 1.3E-6 T 29-03-2018 IPR029016 GAF domain-like Y880_RS13320 7540c4d12e42c2c2d4a75a8d5e91de29 455 SUPERFAMILY SSF55781 181 313 1.53E-8 T 29-03-2018 IPR029016 GAF domain-like Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 SUPERFAMILY SSF52317 1 192 1.93E-54 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 3.3E-87 T 29-03-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.0E-5 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.0E-5 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00097 Anthranilate synthase component II signature 47 56 2.3E-37 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00097 Anthranilate synthase component II signature 169 182 2.3E-37 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00097 Anthranilate synthase component II signature 99 107 2.3E-37 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00097 Anthranilate synthase component II signature 2 16 2.3E-37 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00097 Anthranilate synthase component II signature 119 131 2.3E-37 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00097 Anthranilate synthase component II signature 74 85 2.3E-37 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 Pfam PF00117 Glutamine amidotransferase class-I 4 191 1.8E-55 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 Gene3D G3DSA:3.40.50.880 1 194 7.6E-60 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.4E-13 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.4E-13 T 29-03-2018 Y880_RS29945 776bc65d8186776bac8b12ef520a2bb9 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.4E-13 T 29-03-2018 Y880_RS25820 eaf54c48c02d2a844a7ea61c34f704da 149 SUPERFAMILY SSF55729 5 136 6.81E-30 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS25820 eaf54c48c02d2a844a7ea61c34f704da 149 Pfam PF00583 Acetyltransferase (GNAT) family 42 135 2.2E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS25820 eaf54c48c02d2a844a7ea61c34f704da 149 Gene3D G3DSA:3.40.630.30 1 137 6.4E-26 T 29-03-2018 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 141 7.2E-33 T 29-03-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 5 27 3.6E-13 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 64 85 3.6E-13 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 109 127 3.6E-13 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 87 108 3.6E-13 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 45 62 3.6E-13 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 127 147 3.6E-13 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 Pfam PF02050 Flagellar FliJ protein 21 141 1.2E-36 T 29-03-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Y880_RS02385 e5f03a0f22a8af30637cb2969475f901 147 PIRSF PIRSF019404 1 147 2.3E-39 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS01580 0a6006965c08a0c4de53526d00d4b529 91 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 29-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y880_RS01580 0a6006965c08a0c4de53526d00d4b529 91 Gene3D G3DSA:3.30.70.100 1 91 1.2E-27 T 29-03-2018 Y880_RS01580 0a6006965c08a0c4de53526d00d4b529 91 Pfam PF00708 Acylphosphatase 7 85 3.8E-24 T 29-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y880_RS01580 0a6006965c08a0c4de53526d00d4b529 91 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 29-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y880_RS01580 0a6006965c08a0c4de53526d00d4b529 91 SUPERFAMILY SSF54975 4 90 3.05E-26 T 29-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y880_RS19425 8958da8d76572fd50d2c39f5842afd04 462 Pfam PF07690 Major Facilitator Superfamily 21 358 4.0E-46 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS19425 8958da8d76572fd50d2c39f5842afd04 462 SUPERFAMILY SSF103473 14 395 3.4E-69 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS19425 8958da8d76572fd50d2c39f5842afd04 462 Gene3D G3DSA:1.20.1250.20 209 402 9.4E-20 T 29-03-2018 Y880_RS19425 8958da8d76572fd50d2c39f5842afd04 462 Gene3D G3DSA:1.20.1250.20 6 207 3.5E-37 T 29-03-2018 Y880_RS23890 4fb2fcab1a2724bba55d318d23fbe346 134 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 53 104 1.0E-24 T 29-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Y880_RS23890 4fb2fcab1a2724bba55d318d23fbe346 134 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 4 108 32.986 T 29-03-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Y880_RS23890 4fb2fcab1a2724bba55d318d23fbe346 134 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 30 104 1.7E-33 T 29-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Y880_RS23890 4fb2fcab1a2724bba55d318d23fbe346 134 SUPERFAMILY SSF141734 4 120 4.84E-49 T 29-03-2018 Y880_RS29635 698a1875101f253b202180d062123bcf 168 Pfam PF13590 Domain of unknown function (DUF4136) 31 161 1.4E-7 T 29-03-2018 IPR025411 Domain of unknown function DUF4136 Y880_RS26220 d3cb0068f22ee05579e87b71a0dd6578 217 SUPERFAMILY SSF52499 7 209 1.23E-48 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS26220 d3cb0068f22ee05579e87b71a0dd6578 217 Pfam PF00857 Isochorismatase family 19 199 1.6E-35 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS26220 d3cb0068f22ee05579e87b71a0dd6578 217 Gene3D G3DSA:3.40.50.850 3 215 2.2E-49 T 29-03-2018 Y880_RS23355 cd706252cdcf4d6eae690d49f3d08dd3 174 Pfam PF13975 gag-polyprotein putative aspartyl protease 68 156 7.0E-24 T 29-03-2018 Y880_RS23355 cd706252cdcf4d6eae690d49f3d08dd3 174 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 55 170 2.4E-32 T 29-03-2018 IPR011969 Clan AA aspartic peptidase, C-terminal Y880_RS23355 cd706252cdcf4d6eae690d49f3d08dd3 174 Gene3D G3DSA:2.40.70.10 52 160 3.3E-18 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS23355 cd706252cdcf4d6eae690d49f3d08dd3 174 SUPERFAMILY SSF50630 58 160 3.43E-20 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS17750 497d01499793f5598f3c205f3da9c348 175 Pfam PF13503 Domain of unknown function (DUF4123) 17 143 2.4E-22 T 29-03-2018 IPR025391 Domain of unknown function DUF4123 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 Gene3D G3DSA:3.30.560.10 108 489 6.7E-98 T 29-03-2018 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 Pfam PF00732 GMC oxidoreductase 8 298 4.9E-76 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 257 271 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 PIRSF PIRSF000137 3 541 1.1E-145 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 Pfam PF05199 GMC oxidoreductase 390 526 3.5E-39 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 SUPERFAMILY SSF51905 7 291 3.08E-85 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 SUPERFAMILY SSF51905 475 535 3.08E-85 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 SUPERFAMILY SSF54373 293 476 2.06E-58 T 29-03-2018 Y880_RS16705 8c02b331c2289369a81b267b50fd1296 557 Gene3D G3DSA:4.10.450.10 40 107 2.4E-28 T 29-03-2018 Y880_RS04705 5de6eb597b1f035d300b51241e5fd0b3 527 Pfam PF00743 Flavin-binding monooxygenase-like 27 229 1.7E-12 T 29-03-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 Y880_RS04705 5de6eb597b1f035d300b51241e5fd0b3 527 Gene3D G3DSA:3.50.50.60 11 176 5.4E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04705 5de6eb597b1f035d300b51241e5fd0b3 527 Gene3D G3DSA:3.50.50.60 177 509 5.8E-56 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04705 5de6eb597b1f035d300b51241e5fd0b3 527 SUPERFAMILY SSF51905 298 500 2.24E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS04705 5de6eb597b1f035d300b51241e5fd0b3 527 SUPERFAMILY SSF51905 24 250 2.59E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS13505 032e0017433bfb0bc08d2539f98bcec2 382 SUPERFAMILY SSF53067 6 139 5.31E-26 T 29-03-2018 Y880_RS13505 032e0017433bfb0bc08d2539f98bcec2 382 PIRSF PIRSF015761 36 382 3.1E-49 T 29-03-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 Y880_RS13505 032e0017433bfb0bc08d2539f98bcec2 382 Pfam PF12693 GspL periplasmic domain 226 381 3.2E-46 T 29-03-2018 IPR025691 GspL periplasmic domain Y880_RS13505 032e0017433bfb0bc08d2539f98bcec2 382 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 7 381 2.4E-107 T 29-03-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 Y880_RS13505 032e0017433bfb0bc08d2539f98bcec2 382 Pfam PF05134 Type II secretion system (T2SS), protein L 7 222 8.2E-57 T 29-03-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain Y880_RS01850 b24cfd9356173611adaaef06cd575b53 330 SUPERFAMILY SSF53448 34 252 9.64E-50 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS01850 b24cfd9356173611adaaef06cd575b53 330 Gene3D G3DSA:3.90.550.10 15 296 2.4E-43 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS01850 b24cfd9356173611adaaef06cd575b53 330 Pfam PF00535 Glycosyl transferase family 2 37 154 6.3E-25 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS09465 afe3ec3cf88af86d27c942f97e1b0763 264 SMART SM01040 112 198 1.8E-17 T 29-03-2018 IPR003497 BRO N-terminal domain Y880_RS09465 afe3ec3cf88af86d27c942f97e1b0763 264 Pfam PF02498 BRO family, N-terminal domain 114 198 1.9E-8 T 29-03-2018 IPR003497 BRO N-terminal domain Y880_RS27855 073a8e86cc923fe9c5a68cb55c21b7b3 213 SUPERFAMILY SSF103359 46 196 5.23E-6 T 29-03-2018 Y880_RS27855 073a8e86cc923fe9c5a68cb55c21b7b3 213 Pfam PF05076 Suppressor of fused protein (SUFU) 47 196 1.6E-22 T 29-03-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 Y880_RS13060 33a0dc92cc54cefdac279e15357ed172 124 Pfam PF07866 Protein of unknown function (DUF1653) 44 103 4.6E-30 T 29-03-2018 IPR023387 DUF1653-like domain Y880_RS13060 33a0dc92cc54cefdac279e15357ed172 124 Gene3D G3DSA:2.30.30.320 33 117 3.3E-29 T 29-03-2018 IPR023387 DUF1653-like domain Y880_RS27345 9464d3d294026b48fed9158e562394f0 171 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 4 145 1.3E-47 T 29-03-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase GO:0009159|GO:0050144|GO:0070694 Reactome: R-HSA-74259 Y880_RS27345 9464d3d294026b48fed9158e562394f0 171 SUPERFAMILY SSF52309 1 156 2.98E-44 T 29-03-2018 Y880_RS27345 9464d3d294026b48fed9158e562394f0 171 Gene3D G3DSA:3.40.50.450 1 171 3.0E-36 T 29-03-2018 Y880_RS02875 f69e6a5bd013f70d4190fd72f77ab2f5 205 Gene3D G3DSA:3.90.1720.10 60 204 3.0E-38 T 29-03-2018 Y880_RS02875 f69e6a5bd013f70d4190fd72f77ab2f5 205 Pfam PF00877 NlpC/P60 family 82 190 9.4E-30 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y880_RS02875 f69e6a5bd013f70d4190fd72f77ab2f5 205 SUPERFAMILY SSF54001 66 193 2.13E-39 T 29-03-2018 Y880_RS03465 35fb308a928e792be20878aa20b3a8b1 128 SUPERFAMILY SSF54427 4 127 9.25E-45 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS03465 35fb308a928e792be20878aa20b3a8b1 128 PIRSF PIRSF029394 1 128 1.1E-51 T 29-03-2018 IPR016918 Uncharacterised conserved protein UCP029394 Y880_RS03465 35fb308a928e792be20878aa20b3a8b1 128 Pfam PF14534 Domain of unknown function (DUF4440) 26 114 1.4E-6 T 29-03-2018 IPR027843 Domain of unknown function DUF4440 Y880_RS03465 35fb308a928e792be20878aa20b3a8b1 128 Gene3D G3DSA:3.10.450.50 4 126 9.1E-38 T 29-03-2018 Y880_RS21520 c90efc71ad8967001397d2411333ef26 273 Gene3D G3DSA:3.30.2010.10 66 162 3.2E-22 T 29-03-2018 Y880_RS21520 c90efc71ad8967001397d2411333ef26 273 Pfam PF01435 Peptidase family M48 74 257 3.4E-40 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y880_RS10960 0d6ff3679a1ab6bb3a9893002beaa946 393 Pfam PF05762 VWA domain containing CoxE-like protein 187 272 2.4E-9 T 29-03-2018 IPR008912 Uncharacterised protein family CoxE-like Y880_RS05690 dcf7965f522a0f31903136125620e687 206 ProDom PD023059 PLASMID TYPE PROTEINS YOP III YSCK VIRULENCE K TRANSLOCATION PSCK 1 206 4.0E-100 T 29-03-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 Y880_RS05690 dcf7965f522a0f31903136125620e687 206 Pfam PF06578 YOP proteins translocation protein K (YscK) 3 206 1.4E-91 T 29-03-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 156 2.6E-28 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.6E-29 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 SUPERFAMILY SSF54534 82 157 2.09E-24 T 29-03-2018 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 PIRSF PIRSF006092 1 158 2.2E-52 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 Gene3D G3DSA:1.10.287.180 3 76 5.5E-31 T 29-03-2018 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 Gene3D G3DSA:3.10.50.30 77 158 1.6E-26 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 1.3E-57 T 29-03-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.903 T 29-03-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Y880_RS22270 1a023b65d9a9021d5826c3be752dca2c 158 SUPERFAMILY SSF46557 3 78 1.02E-27 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Y880_RS15080 90b05a54b64468a7aa298774003573be 275 Pfam PF12679 ABC-2 family transporter protein 5 273 7.7E-38 T 29-03-2018 IPR032688 ABC-2 family transporter protein GO:0006810 Y880_RS07390 7e4c0332918215006b9ce4452c8cf268 624 SUPERFAMILY SSF54001 266 420 1.74E-11 T 29-03-2018 Y880_RS07390 7e4c0332918215006b9ce4452c8cf268 624 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 46 205 2.4E-26 T 29-03-2018 IPR024618 Domain of unknown function DUF3857 Y880_RS07390 7e4c0332918215006b9ce4452c8cf268 624 Pfam PF01841 Transglutaminase-like superfamily 265 334 1.1E-5 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS00895 a19533a5a9d9274d1a19d27451405161 277 Gene3D G3DSA:1.20.1260.10 35 203 5.6E-6 T 29-03-2018 IPR012347 Ferritin-related Y880_RS00895 a19533a5a9d9274d1a19d27451405161 277 Pfam PF10118 Predicted metal-dependent hydrolase 13 257 9.8E-89 T 29-03-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y880_RS00895 a19533a5a9d9274d1a19d27451405161 277 PIRSF PIRSF007580 1 277 7.5E-101 T 29-03-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 27 663 7.0E-223 T 29-03-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 SUPERFAMILY SSF52540 317 598 3.02E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 Gene3D G3DSA:3.40.50.300 456 628 1.6E-27 T 29-03-2018 Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 Pfam PF17191 RecG wedge domain 11 170 1.1E-14 T 29-03-2018 IPR033454 RecG, wedge domain Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 Pfam PF00271 Helicase conserved C-terminal domain 479 586 9.2E-16 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 Gene3D G3DSA:3.40.50.300 251 455 8.0E-32 T 29-03-2018 Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 SMART SM00490 503 587 1.1E-21 T 29-03-2018 IPR001650 Helicase, C-terminal Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 Gene3D G3DSA:2.40.50.140 50 140 1.4E-11 T 29-03-2018 Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 Pfam PF00270 DEAD/DEAH box helicase 293 430 9.0E-18 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 SMART SM00487 265 458 5.7E-26 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 Gene3D G3DSA:1.10.150.20 1 49 0.0011 T 29-03-2018 Y880_RS25345 b6b308f1bce01f26a9413c2abf3802a9 691 SUPERFAMILY SSF50249 7 172 2.06E-35 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 Gene3D G3DSA:2.60.40.1180 131 165 0.09 T 29-03-2018 Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 Gene3D G3DSA:2.60.40.1180 166 224 5.4E-5 T 29-03-2018 Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 Gene3D G3DSA:2.60.40.1180 59 130 2.7E-12 T 29-03-2018 Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 SUPERFAMILY SSF81901 91 221 1.11E-20 T 29-03-2018 Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 Pfam PF08238 Sel1 repeat 183 213 0.36 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 Pfam PF08238 Sel1 repeat 75 108 4.9E-4 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 SMART SM00671 112 147 310.0 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 SMART SM00671 74 111 0.023 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 SMART SM00671 148 180 91.0 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS23995 0bd8fbf74595df2175a3d52564aac87b 289 SMART SM00671 181 213 0.17 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS05630 a8ac50547a4eca3d8800b3ca443f6cf5 137 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 21 114 6.7E-11 T 29-03-2018 Y880_RS05630 a8ac50547a4eca3d8800b3ca443f6cf5 137 TIGRFAM TIGR02567 YscW: type III secretion system chaperone YscW 2 125 1.1E-51 T 29-03-2018 IPR013400 Type III secretion system chaperone, YscW Y880_RS19800 f7e7c95d7c06e38fba74ab9f980a330f 303 Pfam PF08666 SAF domain 57 116 1.3E-7 T 29-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Y880_RS19800 f7e7c95d7c06e38fba74ab9f980a330f 303 SMART SM00858 56 116 1.6E-8 T 29-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Y880_RS19800 f7e7c95d7c06e38fba74ab9f980a330f 303 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 120 234 6.0E-30 T 29-03-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain Y880_RS19800 f7e7c95d7c06e38fba74ab9f980a330f 303 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 12 300 5.2E-64 T 29-03-2018 IPR017592 Pilus assembly, Flp-type CpaB Y880_RS19800 f7e7c95d7c06e38fba74ab9f980a330f 303 Gene3D G3DSA:3.90.1210.10 54 117 9.7E-9 T 29-03-2018 Y880_RS16125 c8669cadd406d66b952990ae857d59f7 469 SUPERFAMILY SSF103473 6 426 2.88E-53 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS16125 c8669cadd406d66b952990ae857d59f7 469 Pfam PF00083 Sugar (and other) transporter 21 218 1.1E-17 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y880_RS16125 c8669cadd406d66b952990ae857d59f7 469 Gene3D G3DSA:1.20.1250.20 237 442 1.2E-12 T 29-03-2018 Y880_RS16125 c8669cadd406d66b952990ae857d59f7 469 Gene3D G3DSA:1.20.1250.20 15 231 2.4E-20 T 29-03-2018 Y880_RS10915 e57edfa844130623fab8923e51619897 93 TIGRFAM TIGR03510 XapX: XapX domain 4 48 3.6E-19 T 29-03-2018 IPR020017 XapX domain Y880_RS10915 e57edfa844130623fab8923e51619897 93 Pfam PF07235 Protein of unknown function (DUF1427) 2 83 1.8E-36 T 29-03-2018 IPR009872 Protein of unknown function DUF1427 Y880_RS20695 8a615864605127e8cdfb89e1ef23e82f 201 SUPERFAMILY SSF52972 2 187 3.92E-59 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y880_RS20695 8a615864605127e8cdfb89e1ef23e82f 201 Hamap MF_00528 Septum formation protein Maf [maf]. 3 192 33.614 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS20695 8a615864605127e8cdfb89e1ef23e82f 201 Gene3D G3DSA:3.90.950.10 2 195 2.6E-66 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y880_RS20695 8a615864605127e8cdfb89e1ef23e82f 201 Pfam PF02545 Maf-like protein 4 187 3.4E-54 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS20695 8a615864605127e8cdfb89e1ef23e82f 201 PIRSF PIRSF006305 1 194 8.6E-50 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS20695 8a615864605127e8cdfb89e1ef23e82f 201 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 186 1.6E-53 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 Y880_RS27335 a68c74435751b273b4589235c6ca257a 350 SUPERFAMILY SSF53590 39 348 8.5E-98 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Y880_RS27335 a68c74435751b273b4589235c6ca257a 350 Gene3D G3DSA:3.90.245.10 27 349 1.6E-104 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Y880_RS27335 a68c74435751b273b4589235c6ca257a 350 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 45 55 - T 29-03-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 Y880_RS27335 a68c74435751b273b4589235c6ca257a 350 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 41 340 1.4E-87 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Y880_RS23880 10e48082c6503d91374f70ac8e9647d6 208 Pfam PF02036 SCP-2 sterol transfer family 17 114 1.3E-13 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS23880 10e48082c6503d91374f70ac8e9647d6 208 SUPERFAMILY SSF55718 29 122 9.03E-6 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS28690 3226030973be0a73194f05d1a35a08c0 319 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 233 310 3.3E-16 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS28690 3226030973be0a73194f05d1a35a08c0 319 SUPERFAMILY SSF74653 129 136 5.49E-19 T 29-03-2018 Y880_RS28690 3226030973be0a73194f05d1a35a08c0 319 SUPERFAMILY SSF74653 207 314 5.49E-19 T 29-03-2018 Y880_RS28690 3226030973be0a73194f05d1a35a08c0 319 Gene3D G3DSA:3.30.1150.10 14 318 1.3E-21 T 29-03-2018 Y880_RS28690 3226030973be0a73194f05d1a35a08c0 319 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 235 311 2.9E-14 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS21610 b1e0cc58fd92bcc50ac147bb2bf0a617 182 Pfam PF05229 Spore Coat Protein U domain 29 179 1.0E-32 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS21610 b1e0cc58fd92bcc50ac147bb2bf0a617 182 SMART SM00972 118 179 1.7E-18 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS21610 b1e0cc58fd92bcc50ac147bb2bf0a617 182 Gene3D G3DSA:2.60.40.1090 30 182 1.7E-7 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS14565 972c8f3227a50629d6068920c153d91d 316 Pfam PF12146 Serine aminopeptidase, S33 27 288 4.0E-69 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 Y880_RS14565 972c8f3227a50629d6068920c153d91d 316 PIRSF PIRSF037442 1 309 2.1E-42 T 29-03-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y880_RS14565 972c8f3227a50629d6068920c153d91d 316 Gene3D G3DSA:3.40.50.1820 1 313 1.5E-48 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14565 972c8f3227a50629d6068920c153d91d 316 SUPERFAMILY SSF53474 6 305 7.77E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 Pfam PF13545 Crp-like helix-turn-helix domain 156 224 1.3E-15 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 SMART SM00419 171 219 3.2E-14 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 SUPERFAMILY SSF51206 9 150 4.84E-32 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 SMART SM00100 16 135 4.3E-24 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 SUPERFAMILY SSF46785 150 224 2.05E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 Pfam PF00027 Cyclic nucleotide-binding domain 35 122 6.3E-18 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 Gene3D G3DSA:1.10.10.10 155 227 3.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS29325 74cb61dd7f7721718c4e50a896868dd0 227 Gene3D G3DSA:2.60.120.10 5 154 4.6E-28 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS14475 0ba63f010a749db70d62aae709bcbfac 79 Pfam PF13490 Putative zinc-finger 4 38 3.1E-8 T 29-03-2018 IPR027383 Putative zinc-finger Y880_RS28820 1002a231f3ccb6e7b319dbd8538ae74c 290 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 16 287 1.8E-100 T 29-03-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 Y880_RS28820 1002a231f3ccb6e7b319dbd8538ae74c 290 Pfam PF02219 Methylenetetrahydrofolate reductase 10 286 2.2E-88 T 29-03-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Y880_RS28820 1002a231f3ccb6e7b319dbd8538ae74c 290 SUPERFAMILY SSF51730 8 288 1.16E-95 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like Y880_RS28820 1002a231f3ccb6e7b319dbd8538ae74c 290 Gene3D G3DSA:3.20.20.220 3 290 7.1E-97 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like Y880_RS22520 09981ae0c1b4a1aee8878a0f7143f64d 205 Pfam PF13649 Methyltransferase domain 44 140 4.2E-12 T 29-03-2018 Y880_RS22520 09981ae0c1b4a1aee8878a0f7143f64d 205 Gene3D G3DSA:3.40.50.150 1 194 1.5E-21 T 29-03-2018 Y880_RS22520 09981ae0c1b4a1aee8878a0f7143f64d 205 SUPERFAMILY SSF53335 3 189 3.07E-26 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS05785 1e8b3b51ab262dda3307873085636689 240 Pfam PF00117 Glutamine amidotransferase class-I 92 191 3.5E-10 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS05785 1e8b3b51ab262dda3307873085636689 240 Gene3D G3DSA:3.40.50.880 13 237 4.5E-29 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS05785 1e8b3b51ab262dda3307873085636689 240 SUPERFAMILY SSF52317 3 228 1.3E-39 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS18010 cdc14b1f3d2d709985024fe0f0287007 193 Gene3D G3DSA:3.40.50.850 2 193 1.4E-48 T 29-03-2018 Y880_RS18010 cdc14b1f3d2d709985024fe0f0287007 193 SUPERFAMILY SSF52499 10 191 1.15E-50 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS18010 cdc14b1f3d2d709985024fe0f0287007 193 Pfam PF00857 Isochorismatase family 14 185 4.6E-34 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS09085 81a6d6076327401ca4c852e0f2267b18 437 Pfam PF00296 Luciferase-like monooxygenase 26 391 5.6E-60 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS09085 81a6d6076327401ca4c852e0f2267b18 437 Gene3D G3DSA:3.20.20.30 2 436 2.5E-111 T 29-03-2018 Y880_RS09085 81a6d6076327401ca4c852e0f2267b18 437 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 430 1.1E-166 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y880_RS09085 81a6d6076327401ca4c852e0f2267b18 437 SUPERFAMILY SSF51679 3 431 7.07E-123 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y880_RS09085 81a6d6076327401ca4c852e0f2267b18 437 PIRSF PIRSF000337 3 436 1.0E-142 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y880_RS14235 45cdffb5fbee0231639d6d5d24c3f66f 312 PIRSF PIRSF026649 1 306 1.5E-105 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y880_RS14235 45cdffb5fbee0231639d6d5d24c3f66f 312 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 3 306 50.163 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 Y880_RS14235 45cdffb5fbee0231639d6d5d24c3f66f 312 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4 306 7.8E-135 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 Y880_RS14235 45cdffb5fbee0231639d6d5d24c3f66f 312 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 297 3.4E-87 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 Pfam PF00155 Aminotransferase class I and II 26 347 1.8E-53 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 Gene3D G3DSA:3.40.640.10 130 258 4.6E-23 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 SUPERFAMILY SSF53383 5 347 8.02E-76 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 351 56.497 T 29-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 29-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 Gene3D G3DSA:3.90.1150.10 17 129 2.9E-10 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 348 1.2E-92 T 29-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y880_RS20540 9bdb381f4d68825f529aea00510a57dd 351 Gene3D G3DSA:3.90.1150.10 259 350 5.0E-23 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS29270 2f5ee30f112a9f0933eab6e51b2e4ee6 392 Gene3D G3DSA:2.140.10.20 13 390 5.1E-55 T 29-03-2018 Y880_RS29270 2f5ee30f112a9f0933eab6e51b2e4ee6 392 Pfam PF02239 Cytochrome D1 heme domain 25 386 2.9E-147 T 29-03-2018 Y880_RS29270 2f5ee30f112a9f0933eab6e51b2e4ee6 392 SUPERFAMILY SSF51004 27 390 4.32E-75 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain Y880_RS03435 74c71218bbe416168598b6336f2decce 174 PIRSF PIRSF029393 1 172 3.9E-82 T 29-03-2018 IPR016917 Uncharacterised conserved protein UCP029393 Y880_RS03435 74c71218bbe416168598b6336f2decce 174 Pfam PF11157 Protein of unknown function (DUF2937) 2 159 1.8E-62 T 29-03-2018 IPR022584 Protein of unknown function DUF2937 Y880_RS18680 132d39e883ec9a5f354384cb8e8128f1 274 Gene3D G3DSA:2.40.128.20 30 122 3.3E-19 T 29-03-2018 IPR012674 Calycin Y880_RS18680 132d39e883ec9a5f354384cb8e8128f1 274 Gene3D G3DSA:2.40.128.20 161 255 7.2E-20 T 29-03-2018 IPR012674 Calycin Y880_RS18680 132d39e883ec9a5f354384cb8e8128f1 274 Pfam PF17409 MoaF C-terminal domain 158 270 7.6E-50 T 29-03-2018 IPR035348 MoaF, C-terminal domain Y880_RS18680 132d39e883ec9a5f354384cb8e8128f1 274 Pfam PF10703 MoaF N-terminal domain 8 116 2.7E-34 T 29-03-2018 IPR024724 Molybdenum cofactor biosynthesis protein F, N-terminal Y880_RS17105 4f2812e8822928f186a7881a71050605 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 3.8E-116 T 29-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 Y880_RS17105 4f2812e8822928f186a7881a71050605 426 PIRSF PIRSF006066 1 426 3.1E-140 T 29-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 Y880_RS17105 4f2812e8822928f186a7881a71050605 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 7.4E-102 T 29-03-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y880_RS24435 832608b287aa1812afd6d876e9956008 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 6.7E-149 T 29-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 Y880_RS24435 832608b287aa1812afd6d876e9956008 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 415 7.7E-125 T 29-03-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y880_RS24435 832608b287aa1812afd6d876e9956008 427 PIRSF PIRSF006066 1 427 4.3E-157 T 29-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 Y880_RS23850 8dca035436750d5ebd57cf7bc2ebdf52 560 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 75 243 2.3E-65 T 29-03-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 Y880_RS23850 8dca035436750d5ebd57cf7bc2ebdf52 560 SUPERFAMILY SSF53474 201 492 6.01E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS23850 8dca035436750d5ebd57cf7bc2ebdf52 560 TIGRFAM TIGR01839 PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II 1 560 0.0 T 29-03-2018 IPR011287 Poly(R)-hydroxyalkanoic acid synthase, class II GO:0016746|GO:0042619 Y880_RS23850 8dca035436750d5ebd57cf7bc2ebdf52 560 Gene3D G3DSA:3.40.50.1820 203 530 9.4E-14 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS10890 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 5 143 6.2E-30 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type Y880_RS10890 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 SUPERFAMILY SSF46785 5 146 3.37E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10890 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 51 69 - T 29-03-2018 IPR030489 Transcription regulator Rrf2-type, conserved site Y880_RS10890 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 Gene3D G3DSA:1.10.10.10 1 153 1.1E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS10890 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 Pfam PF02082 Transcriptional regulator 4 85 3.4E-24 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type Y880_RS15515 2ac0cb789091c2c048ecd466653ecff4 426 Gene3D G3DSA:3.40.50.2000 1 255 1.2E-39 T 29-03-2018 Y880_RS15515 2ac0cb789091c2c048ecd466653ecff4 426 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 135 8.8E-28 T 29-03-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y880_RS15515 2ac0cb789091c2c048ecd466653ecff4 426 SUPERFAMILY SSF53756 1 415 2.07E-83 T 29-03-2018 Y880_RS15515 2ac0cb789091c2c048ecd466653ecff4 426 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 231 397 1.2E-4 T 29-03-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 Reactome: R-HSA-156588 Y880_RS15515 2ac0cb789091c2c048ecd466653ecff4 426 Gene3D G3DSA:3.40.50.2000 256 397 1.8E-29 T 29-03-2018 Y880_RS28085 199c0be3358c9b219da7b720fc8033e8 368 SUPERFAMILY SSF55909 5 364 4.46E-147 T 29-03-2018 Y880_RS28085 199c0be3358c9b219da7b720fc8033e8 368 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 6 364 8.6E-185 T 29-03-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 Y880_RS28085 199c0be3358c9b219da7b720fc8033e8 368 Gene3D G3DSA:3.75.10.10 1 368 2.5E-147 T 29-03-2018 Y880_RS28085 199c0be3358c9b219da7b720fc8033e8 368 Hamap MF_01841 Agmatine deiminase [aguA]. 6 364 63.145 T 29-03-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 Y880_RS28085 199c0be3358c9b219da7b720fc8033e8 368 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 14 363 1.1E-129 T 29-03-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 Y880_RS14135 96469b5bf7e8645067870a53d3b53a3b 299 SUPERFAMILY SSF103481 181 282 5.1E-18 T 29-03-2018 Y880_RS14135 96469b5bf7e8645067870a53d3b53a3b 299 Pfam PF00892 EamA-like transporter family 12 135 1.1E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS14135 96469b5bf7e8645067870a53d3b53a3b 299 Pfam PF00892 EamA-like transporter family 147 277 2.6E-21 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS14135 96469b5bf7e8645067870a53d3b53a3b 299 SUPERFAMILY SSF103481 38 136 3.79E-9 T 29-03-2018 Y880_RS29795 088d016c52d0451686e5db86db096276 108 Gene3D G3DSA:3.10.450.40 4 108 8.2E-24 T 29-03-2018 Y880_RS29795 088d016c52d0451686e5db86db096276 108 Pfam PF04965 Gene 25-like lysozyme 16 81 7.7E-16 T 29-03-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y880_RS29795 088d016c52d0451686e5db86db096276 108 SUPERFAMILY SSF160719 11 106 1.27E-24 T 29-03-2018 Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 190 0.0067 T 29-03-2018 Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 Gene3D G3DSA:3.40.50.720 2 257 2.0E-50 T 29-03-2018 Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 255 5.4E-39 T 29-03-2018 Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 8.5E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 8.5E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 8.5E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 8.5E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS12565 e9aa43c88c1062f74eae3c6a1f5798a6 257 SUPERFAMILY SSF51735 4 255 2.17E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS24380 fd305e1ff4c990ea03c9f94b1cd7a643 394 Gene3D G3DSA:2.40.50.100 207 321 1.6E-8 T 29-03-2018 Y880_RS24380 fd305e1ff4c990ea03c9f94b1cd7a643 394 Gene3D G3DSA:2.40.50.100 55 133 2.0E-13 T 29-03-2018 Y880_RS24380 fd305e1ff4c990ea03c9f94b1cd7a643 394 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 286 5.0E-16 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS24380 fd305e1ff4c990ea03c9f94b1cd7a643 394 Pfam PF00529 HlyD membrane-fusion protein of T1SS 33 341 6.9E-15 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS24380 fd305e1ff4c990ea03c9f94b1cd7a643 394 SUPERFAMILY SSF111369 163 263 1.2E-9 T 29-03-2018 Y880_RS24380 fd305e1ff4c990ea03c9f94b1cd7a643 394 SUPERFAMILY SSF56954 17 206 4.18E-7 T 29-03-2018 Y880_RS24380 fd305e1ff4c990ea03c9f94b1cd7a643 394 Gene3D G3DSA:1.10.287.470 134 177 3.9E-12 T 29-03-2018 Y880_RS00235 e881de88451f5d8d8bf5f47880012572 97 Gene3D G3DSA:3.30.1450.10 25 97 9.1E-5 T 29-03-2018 Y880_RS00235 e881de88451f5d8d8bf5f47880012572 97 Pfam PF11006 Protein of unknown function (DUF2845) 19 93 8.4E-17 T 29-03-2018 IPR021268 Protein of unknown function DUF2845 Y880_RS00950 fd6374e625fd5c2e62072eb35a2954bc 370 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 354 8.4E-71 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y880_RS00950 fd6374e625fd5c2e62072eb35a2954bc 370 Gene3D G3DSA:3.20.20.70 1 368 1.7E-106 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS00950 fd6374e625fd5c2e62072eb35a2954bc 370 SUPERFAMILY SSF51395 3 357 1.68E-100 T 29-03-2018 Y880_RS09335 0720e5ccf0d5ba912fd72c231ceaa48e 275 Gene3D G3DSA:3.40.50.170 18 274 1.9E-21 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS09335 0720e5ccf0d5ba912fd72c231ceaa48e 275 SUPERFAMILY SSF53328 41 93 4.84E-18 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS09335 0720e5ccf0d5ba912fd72c231ceaa48e 275 SUPERFAMILY SSF53328 123 273 4.84E-18 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS09335 0720e5ccf0d5ba912fd72c231ceaa48e 275 Pfam PF00551 Formyl transferase 122 251 1.1E-5 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y880_RS25930 edc540381de5edd97f110cf426d5b898 265 Pfam PF01061 ABC-2 type transporter 20 225 8.1E-29 T 29-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Y880_RS25930 edc540381de5edd97f110cf426d5b898 265 PRINTS PR00164 ABC-2 type transport system membrane protein signature 35 56 4.6E-6 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS25930 edc540381de5edd97f110cf426d5b898 265 PRINTS PR00164 ABC-2 type transport system membrane protein signature 183 202 4.6E-6 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS25930 edc540381de5edd97f110cf426d5b898 265 PRINTS PR00164 ABC-2 type transport system membrane protein signature 146 170 4.6E-6 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Y880_RS03625 104ba8f81e7e1ec9c88450f1a510a501 152 Gene3D G3DSA:2.40.160.20 13 149 1.3E-35 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS21575 364020ed9e2860f55618740b57ec402e 137 SUPERFAMILY SSF54593 1 135 9.35E-35 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS21575 364020ed9e2860f55618740b57ec402e 137 Gene3D G3DSA:3.10.180.10 7 137 4.6E-23 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS21575 364020ed9e2860f55618740b57ec402e 137 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 131 1.5E-11 T 29-03-2018 IPR028973 PhnB-like Y880_RS29350 cd92d3cca96153096beeef67b38279cc 238 Gene3D G3DSA:3.40.50.880 1 217 2.0E-33 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS29350 cd92d3cca96153096beeef67b38279cc 238 Pfam PF00117 Glutamine amidotransferase class-I 41 181 2.6E-13 T 29-03-2018 IPR017926 Glutamine amidotransferase Y880_RS29350 cd92d3cca96153096beeef67b38279cc 238 SUPERFAMILY SSF52317 1 187 5.88E-51 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS27025 a0c8fc5bd00646490e62458c1fb6d04d 172 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 162 4.5E-58 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS27025 a0c8fc5bd00646490e62458c1fb6d04d 172 PIRSF PIRSF028301 3 172 9.4E-59 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS27025 a0c8fc5bd00646490e62458c1fb6d04d 172 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 163 4.4E-56 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS21660 b877a8c0aa1c4b33389e0493f4faaf70 318 PIRSF PIRSF037004 3 318 1.1E-124 T 29-03-2018 IPR017087 Uncharacterised conserved protein UCP037004 Y880_RS21660 b877a8c0aa1c4b33389e0493f4faaf70 318 Pfam PF04463 Protein of unknown function (DUF523) 13 150 1.1E-33 T 29-03-2018 IPR007553 Domain of unknown function DUF523 Y880_RS21660 b877a8c0aa1c4b33389e0493f4faaf70 318 Pfam PF08349 Protein of unknown function (DUF1722) 193 309 3.7E-41 T 29-03-2018 IPR013560 Domain of unknown function DUF1722 Y880_RS12750 662cb72a79f033873daccf8bc8836398 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 3.6E-46 T 29-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y880_RS12750 662cb72a79f033873daccf8bc8836398 249 SUPERFAMILY SSF52402 1 244 6.42E-85 T 29-03-2018 Y880_RS12750 662cb72a79f033873daccf8bc8836398 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 29-03-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Y880_RS12750 662cb72a79f033873daccf8bc8836398 249 PIRSF PIRSF000090 1 249 7.1E-83 T 29-03-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Y880_RS12750 662cb72a79f033873daccf8bc8836398 249 SMART SM00893 23 211 7.4E-68 T 29-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y880_RS12750 662cb72a79f033873daccf8bc8836398 249 Gene3D G3DSA:3.40.50.620 1 248 8.4E-86 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS20765 208e7b4832cc49bb5bb9fad765961e10 269 Pfam PF09906 Uncharacterized protein conserved in bacteria (DUF2135) 199 255 1.7E-16 T 29-03-2018 IPR019220 Domain of unknown function DUF2135 Y880_RS20765 208e7b4832cc49bb5bb9fad765961e10 269 PIRSF PIRSF012281 3 269 5.7E-127 T 29-03-2018 IPR012039 Uncharacterised conserved protein UCP012281 Y880_RS27675 0f6435f324f87d39f8c1c80e3df3b0d6 254 TIGRFAM TIGR00808 malonate_madM: malonate transporter, MadM subunit 1 254 3.9E-111 T 29-03-2018 IPR004691 Malonate/sodium symporter MadM subunit GO:0044668 Y880_RS27675 0f6435f324f87d39f8c1c80e3df3b0d6 254 Pfam PF03818 Malonate/sodium symporter MadM subunit 3 61 5.0E-26 T 29-03-2018 IPR018402 Malonate/sodium symporter MadM subunit, N-terminal Y880_RS01600 5112ad834f3e61a4f64e1a26d3424788 441 Pfam PF03573 outer membrane porin, OprD family 34 440 2.0E-163 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS01600 5112ad834f3e61a4f64e1a26d3424788 441 Gene3D G3DSA:2.40.160.10 1 441 8.3E-133 T 29-03-2018 Y880_RS21615 1dbc062306d76f2cf4b1cc8e4bc2edcd 177 Pfam PF05229 Spore Coat Protein U domain 30 174 3.4E-35 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS21615 1dbc062306d76f2cf4b1cc8e4bc2edcd 177 SMART SM00972 119 174 1.4E-20 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS16825 ce7a2182f9ae1fa7c95a36b5f21f7222 118 Pfam PF12021 Protein of unknown function (DUF3509) 29 112 9.3E-19 T 29-03-2018 IPR021898 Protein of unknown function DUF3509 Y880_RS07005 f80943d65812b06c1ba608c9a359defa 130 Pfam PF11720 Peptidase inhibitor I78 family 66 130 1.2E-16 T 29-03-2018 IPR021719 Proteinase inhibitor I78 Y880_RS07005 f80943d65812b06c1ba608c9a359defa 130 Gene3D G3DSA:3.30.10.10 72 128 2.9E-4 T 29-03-2018 Y880_RS06785 291f4b8ce1dbdcf731cb84d49242bc6a 158 Gene3D G3DSA:1.10.3720.10 7 151 0.0015 T 29-03-2018 Y880_RS06785 291f4b8ce1dbdcf731cb84d49242bc6a 158 Pfam PF01618 MotA/TolQ/ExbB proton channel family 72 138 1.9E-6 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 SUPERFAMILY SSF54373 261 348 1.11E-16 T 29-03-2018 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 Pfam PF01266 FAD dependent oxidoreductase 6 385 9.5E-68 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 Gene3D G3DSA:3.30.9.10 140 201 3.4E-5 T 29-03-2018 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 Gene3D G3DSA:3.30.9.10 202 347 4.7E-35 T 29-03-2018 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 SUPERFAMILY SSF51905 348 411 1.42E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 SUPERFAMILY SSF51905 107 261 1.42E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 SUPERFAMILY SSF51905 4 57 1.42E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS08185 97ad78731132317acd2c7d15b653625a 417 Gene3D G3DSA:3.40.50.20 1 139 4.5E-4 T 29-03-2018 Y880_RS19875 c54861984224bb3ad076305b02fa8f72 265 Pfam PF06271 RDD family 55 164 3.1E-20 T 29-03-2018 IPR010432 RDD Y880_RS06695 a90ccc86d325b6986fdf0fd83f38f97e 175 Gene3D G3DSA:1.20.1250.20 1 174 4.3E-18 T 29-03-2018 Y880_RS06695 a90ccc86d325b6986fdf0fd83f38f97e 175 Pfam PF07690 Major Facilitator Superfamily 26 162 9.2E-15 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS06695 a90ccc86d325b6986fdf0fd83f38f97e 175 SUPERFAMILY SSF103473 5 159 5.36E-17 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS07020 e4cd30d17d3fcc475de02a20d2cb37a6 567 Pfam PF08019 Domain of unknown function (DUF1705) 54 203 3.0E-52 T 29-03-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Y880_RS07020 e4cd30d17d3fcc475de02a20d2cb37a6 567 Pfam PF00884 Sulfatase 233 521 8.3E-53 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS07020 e4cd30d17d3fcc475de02a20d2cb37a6 567 Gene3D G3DSA:3.40.720.10 223 527 7.3E-21 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS07020 e4cd30d17d3fcc475de02a20d2cb37a6 567 SUPERFAMILY SSF53649 234 535 4.36E-23 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS22255 28cbd11995c1994020948ec4b895b112 207 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 12 205 30.576 T 29-03-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 Y880_RS22255 28cbd11995c1994020948ec4b895b112 207 Gene3D G3DSA:3.40.50.150 1 207 1.9E-56 T 29-03-2018 Y880_RS22255 28cbd11995c1994020948ec4b895b112 207 SUPERFAMILY SSF53335 27 205 7.97E-43 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22255 28cbd11995c1994020948ec4b895b112 207 Pfam PF01728 FtsJ-like methyltransferase 28 204 2.6E-56 T 29-03-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Y880_RS22255 28cbd11995c1994020948ec4b895b112 207 PIRSF PIRSF005461 1 207 1.8E-80 T 29-03-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 Y880_RS14220 d8555fa9663d3f082c0b7a22c249068e 267 Pfam PF04333 MlaA lipoprotein 69 262 1.4E-67 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS14220 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 70 83 9.6E-25 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS14220 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 174 191 9.6E-25 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS14220 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 87 103 9.6E-25 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS14220 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 138 155 9.6E-25 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 Y880_RS23370 a454dc2ccee2b47477add271a4d605e6 206 SUPERFAMILY SSF53474 5 189 2.1E-20 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS23370 a454dc2ccee2b47477add271a4d605e6 206 Pfam PF05728 Uncharacterised protein family (UPF0227) 7 190 1.8E-70 T 29-03-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA Y880_RS23370 a454dc2ccee2b47477add271a4d605e6 206 Gene3D G3DSA:3.40.50.1820 4 196 4.7E-17 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS18200 95345d610ae3968f7f6db3a07e3cacf1 50 Pfam PF03889 Domain of unknown function 5 40 2.3E-18 T 29-03-2018 IPR005589 Protein of unknown function DUF331 Y880_RS21755 069bb6447020d53ec67e23ee85e8812e 430 ProDom PD140749 ORF PHAGE PA0727 1 429 0.0 T 29-03-2018 Y880_RS02250 2e80b52abd07e1bb525b78f411a09344 74 Pfam PF00550 Phosphopantetheine attachment site 20 72 2.2E-5 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS02250 2e80b52abd07e1bb525b78f411a09344 74 SUPERFAMILY SSF47336 8 72 7.59E-10 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain Y880_RS02250 2e80b52abd07e1bb525b78f411a09344 74 Gene3D G3DSA:1.10.1200.10 4 73 9.4E-8 T 29-03-2018 Y880_RS00365 f5725f82c6c1fb4047e4c17cbb6920be 345 Pfam PF05145 Transition state regulatory protein AbrB 33 340 1.0E-83 T 29-03-2018 IPR007820 AbrB family GO:0010468|GO:0016021 Y880_RS00365 f5725f82c6c1fb4047e4c17cbb6920be 345 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 184 340 7.2E-38 T 29-03-2018 IPR017516 AbrB duplication Y880_RS00365 f5725f82c6c1fb4047e4c17cbb6920be 345 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 11 164 2.9E-37 T 29-03-2018 IPR017516 AbrB duplication Y880_RS00365 f5725f82c6c1fb4047e4c17cbb6920be 345 PIRSF PIRSF038991 3 345 2.8E-68 T 29-03-2018 IPR007820 AbrB family GO:0010468|GO:0016021 Y880_RS18695 b07eac8379ab74f3ba9e07ad222a75c0 96 PIRSF PIRSF028291 1 96 4.0E-43 T 29-03-2018 IPR014543 Uncharacterised conserved protein UCP028291 Y880_RS18695 b07eac8379ab74f3ba9e07ad222a75c0 96 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 6 92 1.5E-29 T 29-03-2018 IPR014543 Uncharacterised conserved protein UCP028291 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 3.2E-28 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 3.2E-28 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 3.2E-28 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 3.2E-28 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 3.2E-28 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 3.2E-28 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 SUPERFAMILY SSF118215 10 402 1.03E-122 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 296 319 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 3 429 38.22 T 29-03-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 Gene3D G3DSA:1.10.3860.10 2 409 6.6E-119 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS02800 78defffdc394122a42cf03abd1d28dbd 436 Pfam PF00375 Sodium:dicarboxylate symporter family 10 402 1.4E-113 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y880_RS09405 99a30abec7b979911d99d74ea85b93d2 254 SUPERFAMILY SSF53474 2 232 6.39E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS09405 99a30abec7b979911d99d74ea85b93d2 254 Gene3D G3DSA:3.40.50.1820 2 236 2.0E-24 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS09405 99a30abec7b979911d99d74ea85b93d2 254 Pfam PF00975 Thioesterase domain 7 230 2.0E-39 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 Gene3D G3DSA:3.90.20.10 22 224 6.6E-5 T 29-03-2018 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 SUPERFAMILY SSF64518 145 455 7.98E-17 T 29-03-2018 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 346 5.3E-76 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 PRINTS PR01005 Flagellar hook-associated protein signature 362 384 4.4E-14 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 4.4E-14 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 4.4E-14 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 4.4E-14 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 4.4E-14 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 SUPERFAMILY SSF64518 503 682 4.32E-21 T 29-03-2018 Y880_RS02235 728f452c93fbd65b163eb6d688e48fb6 682 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 625 679 1.4E-8 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y880_RS10965 df9cb733f876d8311421e36bdd38b5fe 131 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 113 2.8E-21 T 29-03-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y880_RS10965 df9cb733f876d8311421e36bdd38b5fe 131 SUPERFAMILY SSF51316 1 130 2.3E-47 T 29-03-2018 IPR011057 Mss4-like Y880_RS10965 df9cb733f876d8311421e36bdd38b5fe 131 Gene3D G3DSA:3.90.1590.10 1 131 1.6E-40 T 29-03-2018 Y880_RS26840 71d795bef02320b54d8f0b3a2498e74f 117 Pfam PF16068 Domain of unknown function (DUF4810) 26 108 2.7E-32 T 29-03-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats Y880_RS26840 71d795bef02320b54d8f0b3a2498e74f 117 PIRSF PIRSF020555 1 117 8.8E-60 T 29-03-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats Y880_RS00915 eb9903c94b36b1c75648455a9ba61d98 304 Pfam PF01553 Acyltransferase 76 221 3.1E-14 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS00915 eb9903c94b36b1c75648455a9ba61d98 304 SMART SM00563 89 231 1.2E-15 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Y880_RS00915 eb9903c94b36b1c75648455a9ba61d98 304 SUPERFAMILY SSF69593 58 288 3.79E-36 T 29-03-2018 Y880_RS00915 eb9903c94b36b1c75648455a9ba61d98 304 Gene3D G3DSA:3.40.1130.10 41 284 1.6E-22 T 29-03-2018 Y880_RS08035 658ecf9cbc2f5ce8e3a1b1ff478fc927 926 Gene3D G3DSA:3.20.20.80 9 819 5.4E-107 T 29-03-2018 Y880_RS08035 658ecf9cbc2f5ce8e3a1b1ff478fc927 926 SUPERFAMILY SSF51445 4 177 1.25E-132 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS08035 658ecf9cbc2f5ce8e3a1b1ff478fc927 926 SUPERFAMILY SSF51445 242 483 1.25E-132 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS08035 658ecf9cbc2f5ce8e3a1b1ff478fc927 926 SUPERFAMILY SSF51445 520 818 1.25E-132 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS08035 658ecf9cbc2f5ce8e3a1b1ff478fc927 926 SMART SM00642 12 506 2.2E-6 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS08035 658ecf9cbc2f5ce8e3a1b1ff478fc927 926 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 918 1.8E-282 T 29-03-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 Y880_RS08035 658ecf9cbc2f5ce8e3a1b1ff478fc927 926 Pfam PF00128 Alpha amylase, catalytic domain 25 94 5.4E-15 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y880_RS00135 967aca3d48e21703f991f1645a7dd62c 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 17 136 1.1E-28 T 29-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 Y880_RS04165 5488e12f1dd778535d8ab646900c4647 135 Pfam PF04304 Protein of unknown function (DUF454) 15 129 5.7E-41 T 29-03-2018 IPR007401 Protein of unknown function DUF454 Y880_RS04165 5488e12f1dd778535d8ab646900c4647 135 PIRSF PIRSF016789 14 134 5.0E-37 T 29-03-2018 IPR007401 Protein of unknown function DUF454 Y880_RS00860 c9d5efa36af0737b5d6ec2c699a302bf 223 SMART SM00327 14 188 8.0E-16 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS00860 c9d5efa36af0737b5d6ec2c699a302bf 223 Gene3D G3DSA:3.40.50.410 12 217 3.0E-28 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS00860 c9d5efa36af0737b5d6ec2c699a302bf 223 SUPERFAMILY SSF53300 13 191 1.96E-25 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS00860 c9d5efa36af0737b5d6ec2c699a302bf 223 Pfam PF00092 von Willebrand factor type A domain 17 189 1.5E-12 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS21915 6cc689752f43ea851fc956fc59cdae5e 296 Pfam PF02470 MlaD protein 41 131 3.8E-12 T 29-03-2018 IPR003399 Mce/MlaD Y880_RS21915 6cc689752f43ea851fc956fc59cdae5e 296 Pfam PF02470 MlaD protein 156 216 1.1E-11 T 29-03-2018 IPR003399 Mce/MlaD Y880_RS20140 4782a3d3b48ab8160ead0ec53b9f56fb 446 Pfam PF09375 Imelysin 67 423 3.9E-97 T 29-03-2018 IPR018976 Peptidase M75, Imelysin Y880_RS27625 d5f7655ec3c83af5fcc134e36f8cafe1 70 Pfam PF11278 Protein of unknown function (DUF3079) 1 49 8.2E-34 T 29-03-2018 IPR021430 Protein of unknown function DUF3079 Y880_RS16140 ef7599314c074e7cd695dcd1eda38f94 271 Gene3D G3DSA:3.60.110.10 1 254 9.7E-69 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS16140 ef7599314c074e7cd695dcd1eda38f94 271 Pfam PF00795 Carbon-nitrogen hydrolase 5 242 4.7E-49 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS16140 ef7599314c074e7cd695dcd1eda38f94 271 SUPERFAMILY SSF56317 1 251 5.62E-70 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS21505 66d3938ce389346054971e86aadfb844 192 Pfam PF01169 Uncharacterized protein family UPF0016 103 178 8.1E-22 T 29-03-2018 IPR001727 Gdt1 family Y880_RS21505 66d3938ce389346054971e86aadfb844 192 Pfam PF01169 Uncharacterized protein family UPF0016 9 79 2.3E-19 T 29-03-2018 IPR001727 Gdt1 family Y880_RS24030 e7a0599bd2c2f32c6922533871ceeb49 276 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 41 271 2.7E-109 T 29-03-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 Y880_RS24030 e7a0599bd2c2f32c6922533871ceeb49 276 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y880_RS24030 e7a0599bd2c2f32c6922533871ceeb49 276 SUPERFAMILY SSF52540 47 270 1.61E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS24030 e7a0599bd2c2f32c6922533871ceeb49 276 SMART SM00382 57 245 3.8E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS24030 e7a0599bd2c2f32c6922533871ceeb49 276 Pfam PF00005 ABC transporter 49 196 4.0E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS24030 e7a0599bd2c2f32c6922533871ceeb49 276 Gene3D G3DSA:3.40.50.300 4 275 2.0E-71 T 29-03-2018 Y880_RS14030 5c56ffaa6b88100368b405a0d30e7659 195 Pfam PF04279 Intracellular septation protein A 1 185 1.8E-60 T 29-03-2018 IPR006008 Intracellular septation protein A GO:0016021 Y880_RS14030 5c56ffaa6b88100368b405a0d30e7659 195 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 187 17.597 T 29-03-2018 IPR006008 Intracellular septation protein A GO:0016021 Y880_RS14030 5c56ffaa6b88100368b405a0d30e7659 195 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 186 2.2E-52 T 29-03-2018 IPR006008 Intracellular septation protein A GO:0016021 Y880_RS24725 9499d903aa76bf393c017881a7c69f12 184 Pfam PF03695 Uncharacterised protein family (UPF0149) 11 172 2.3E-30 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 Y880_RS24725 9499d903aa76bf393c017881a7c69f12 184 SUPERFAMILY SSF101327 7 171 2.09E-40 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 Y880_RS24725 9499d903aa76bf393c017881a7c69f12 184 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 4 182 31.486 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 Y880_RS18485 ab281e63b3e051bb1fdf8354cc93afb5 248 Gene3D G3DSA:3.40.190.10 19 135 9.6E-10 T 29-03-2018 Y880_RS18485 ab281e63b3e051bb1fdf8354cc93afb5 248 Gene3D G3DSA:3.40.190.10 136 242 4.7E-7 T 29-03-2018 Y880_RS18485 ab281e63b3e051bb1fdf8354cc93afb5 248 SUPERFAMILY SSF53850 26 234 5.61E-28 T 29-03-2018 Y880_RS18485 ab281e63b3e051bb1fdf8354cc93afb5 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 233 1.6E-10 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS23795 59505b7f896a1dbf6ccdb7a878990cf0 255 SUPERFAMILY SSF50199 22 156 1.57E-28 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Y880_RS23795 59505b7f896a1dbf6ccdb7a878990cf0 255 Pfam PF00565 Staphylococcal nuclease homologue 47 154 1.6E-16 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Y880_RS23795 59505b7f896a1dbf6ccdb7a878990cf0 255 SMART SM00318 24 155 4.8E-15 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Y880_RS23795 59505b7f896a1dbf6ccdb7a878990cf0 255 Gene3D G3DSA:2.40.50.90 20 159 1.1E-26 T 29-03-2018 IPR035437 Staphylococcal nuclease (SNase-like), OB-fold/extended TUDOR domain Y880_RS23585 830a0759849f291edd54aa8a1b8997fb 268 SUPERFAMILY SSF56112 35 217 8.56E-12 T 29-03-2018 IPR011009 Protein kinase-like domain Y880_RS23585 830a0759849f291edd54aa8a1b8997fb 268 Gene3D G3DSA:3.90.1200.10 59 254 7.9E-10 T 29-03-2018 Y880_RS23585 830a0759849f291edd54aa8a1b8997fb 268 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 21 231 2.0E-71 T 29-03-2018 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 Reactome: R-HSA-6782315|Reactome: R-HSA-6804756 Y880_RS23585 830a0759849f291edd54aa8a1b8997fb 268 PIRSF PIRSF037318 2 266 9.7E-126 T 29-03-2018 IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP GO:0009103|GO:0016301 Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 Gene3D G3DSA:1.10.10.10 2 89 1.8E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 Pfam PF03466 LysR substrate binding domain 95 301 2.8E-38 T 29-03-2018 IPR005119 LysR, substrate-binding Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 SUPERFAMILY SSF53850 97 302 1.78E-38 T 29-03-2018 Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.1E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 Gene3D G3DSA:3.40.190.10 188 272 3.7E-16 T 29-03-2018 Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 Gene3D G3DSA:3.40.190.10 98 187 1.2E-22 T 29-03-2018 Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 SUPERFAMILY SSF46785 5 116 5.69E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 2.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 2.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS09685 07ff96bb647b7b315ea579d461637721 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 2.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y880_RS24175 1e9b87d3031a254e966f8e8abccfee34 173 Pfam PF13511 Domain of unknown function (DUF4124) 7 57 8.4E-15 T 29-03-2018 IPR025392 Domain of unknown function DUF4124 Y880_RS26270 b93fc498d15fa1aa117a03e9f6f81ba9 400 Pfam PF01757 Acyltransferase family 38 363 9.8E-22 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 Y880_RS27705 d21cd284b2154b3d9e734774b1541343 460 PIRSF PIRSF000521 19 452 8.4E-23 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27705 d21cd284b2154b3d9e734774b1541343 460 Gene3D G3DSA:3.90.1150.10 2 185 6.2E-38 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS27705 d21cd284b2154b3d9e734774b1541343 460 Gene3D G3DSA:3.40.640.10 196 348 1.6E-41 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS27705 d21cd284b2154b3d9e734774b1541343 460 Pfam PF00202 Aminotransferase class-III 38 447 5.7E-82 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS27705 d21cd284b2154b3d9e734774b1541343 460 SUPERFAMILY SSF53383 18 447 3.52E-115 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS03975 f735603104d2f1e186a1ef303a65d572 221 Gene3D G3DSA:3.40.50.150 53 200 1.1E-27 T 29-03-2018 Y880_RS03975 f735603104d2f1e186a1ef303a65d572 221 SUPERFAMILY SSF53335 46 190 2.34E-29 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS03975 f735603104d2f1e186a1ef303a65d572 221 Pfam PF13578 Methyltransferase domain 84 187 1.6E-15 T 29-03-2018 Y880_RS08460 bd2c798fa9bddf351e10728958a72c24 356 PIRSF PIRSF038896 9 339 1.2E-87 T 29-03-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 Y880_RS08460 bd2c798fa9bddf351e10728958a72c24 356 Pfam PF12706 Beta-lactamase superfamily domain 94 288 2.9E-46 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS08460 bd2c798fa9bddf351e10728958a72c24 356 SUPERFAMILY SSF56281 77 153 4.06E-38 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS08460 bd2c798fa9bddf351e10728958a72c24 356 SUPERFAMILY SSF56281 180 329 4.06E-38 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS08460 bd2c798fa9bddf351e10728958a72c24 356 Gene3D G3DSA:3.60.15.10 56 340 1.6E-50 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS07090 29a781ee5f37ab997aa4367d8d18e1fe 250 Pfam PF03070 TENA/THI-4/PQQC family 14 222 1.7E-69 T 29-03-2018 IPR004305 Thiaminase-2/PQQC Y880_RS07090 29a781ee5f37ab997aa4367d8d18e1fe 250 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 6 241 3.4E-124 T 29-03-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 Y880_RS07090 29a781ee5f37ab997aa4367d8d18e1fe 250 Gene3D G3DSA:1.20.910.10 1 249 5.4E-41 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS07090 29a781ee5f37ab997aa4367d8d18e1fe 250 SUPERFAMILY SSF48613 2 248 9.34E-79 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y880_RS07090 29a781ee5f37ab997aa4367d8d18e1fe 250 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 250 142.529 T 29-03-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 Y880_RS15580 cf4fbda94b46b5f86a24e1eb4b639fe2 214 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 6 199 27.899 T 29-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Y880_RS15580 cf4fbda94b46b5f86a24e1eb4b639fe2 214 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 14 198 1.1E-66 T 29-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Y880_RS15580 cf4fbda94b46b5f86a24e1eb4b639fe2 214 PIRSF PIRSF006091 1 210 3.9E-74 T 29-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Y880_RS15580 cf4fbda94b46b5f86a24e1eb4b639fe2 214 SMART SM00900 105 197 1.4E-35 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y880_RS15580 cf4fbda94b46b5f86a24e1eb4b639fe2 214 Pfam PF04205 FMN-binding domain 105 194 1.7E-17 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 SUPERFAMILY SSF53335 7 115 2.94E-48 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 SUPERFAMILY SSF53335 215 312 2.94E-48 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 312 39.447 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 SUPERFAMILY SSF81799 116 215 1.44E-34 T 29-03-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 311 1.4E-113 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 Pfam PF01795 MraW methylase family 5 311 6.3E-111 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 PIRSF PIRSF004486 1 313 5.6E-103 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 Gene3D G3DSA:3.40.50.150 7 179 1.2E-20 T 29-03-2018 Y880_RS20400 317be90da4a2b16f1bb58c0a3f675140 313 Gene3D G3DSA:3.40.50.150 180 313 4.1E-19 T 29-03-2018 Y880_RS21295 b03c4cc00f75308b3af4c8fb5264beca 425 SUPERFAMILY SSF111369 56 124 1.96E-7 T 29-03-2018 Y880_RS21295 b03c4cc00f75308b3af4c8fb5264beca 425 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 314 2.0E-11 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS21295 b03c4cc00f75308b3af4c8fb5264beca 425 Gene3D G3DSA:1.20.1600.10 67 365 4.2E-16 T 29-03-2018 Y880_RS13455 594569e405c020706d7547b1ed165421 321 Pfam PF08907 Domain of unknown function (DUF1853) 17 300 9.9E-94 T 29-03-2018 IPR015003 Protein of unknown function DUF1853 Y880_RS01970 7df39d6c207a5f1d1859a14741887be4 164 ProDom PD010978 LATE EMBRYOGENESIS ABUNDANT DESICCATION SIMILAR PROTECTANT PROTEINS RELATED EMBRYOGENESIS-ABUNDANT EMBRYOGENESIS-LIKE 32 156 0.002 T 29-03-2018 Y880_RS01970 7df39d6c207a5f1d1859a14741887be4 164 SMART SM00769 38 157 8.1E-37 T 29-03-2018 IPR013990 Water stress and hypersensitive response domain GO:0009269 Y880_RS01970 7df39d6c207a5f1d1859a14741887be4 164 Gene3D G3DSA:2.60.40.10 36 153 1.1E-20 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS01970 7df39d6c207a5f1d1859a14741887be4 164 Pfam PF03168 Late embryogenesis abundant protein 59 153 9.1E-22 T 29-03-2018 IPR004864 Late embryogenesis abundant protein, LEA-14 Y880_RS01970 7df39d6c207a5f1d1859a14741887be4 164 SUPERFAMILY SSF117070 19 156 1.12E-31 T 29-03-2018 Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 Gene3D G3DSA:3.55.50.10 95 186 6.1E-32 T 29-03-2018 Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 Pfam PF05954 Phage late control gene D protein (GPD) 26 327 2.1E-104 T 29-03-2018 Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 Gene3D G3DSA:2.40.50.230 367 449 8.3E-40 T 29-03-2018 IPR006531 Gp5 N-terminal Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 8 520 2.1E-203 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 SUPERFAMILY SSF69279 8 181 1.28E-62 T 29-03-2018 Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 20 503 6.7E-198 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 SUPERFAMILY SSF69349 439 623 7.69E-42 T 29-03-2018 Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 SUPERFAMILY SSF69279 187 360 4.42E-36 T 29-03-2018 Y880_RS27065 3f93992e1136f479c668e03fd06b3cd2 643 SUPERFAMILY SSF69255 362 449 1.15E-35 T 29-03-2018 Y880_RS14765 d059711350a6241ac774e5238fea74b1 96 Pfam PF10262 Rdx family 8 80 2.0E-32 T 29-03-2018 IPR011893 Selenoprotein, Rdx type Y880_RS14765 d059711350a6241ac774e5238fea74b1 96 Gene3D G3DSA:3.40.30.10 1 96 5.6E-42 T 29-03-2018 Y880_RS14765 d059711350a6241ac774e5238fea74b1 96 SUPERFAMILY SSF52833 6 89 3.35E-28 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS14765 d059711350a6241ac774e5238fea74b1 96 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 8 79 1.2E-22 T 29-03-2018 IPR011893 Selenoprotein, Rdx type Y880_RS13375 8426e20a7354a236bb8c42e17bca4a67 361 Pfam PF13584 Oxygen tolerance 13 361 2.6E-95 T 29-03-2018 IPR025738 Aerotolerance-related protein BatD Y880_RS21530 0e85c27acfefe774a3a339c6ccb74bff 204 Gene3D G3DSA:3.90.1680.10 1 204 3.0E-42 T 29-03-2018 IPR003738 SOS response associated peptidase (SRAP) Y880_RS21530 0e85c27acfefe774a3a339c6ccb74bff 204 Pfam PF02586 SOS response associated peptidase (SRAP) 1 191 1.6E-33 T 29-03-2018 IPR003738 SOS response associated peptidase (SRAP) Y880_RS21530 0e85c27acfefe774a3a339c6ccb74bff 204 SUPERFAMILY SSF143081 3 199 1.44E-43 T 29-03-2018 IPR003738 SOS response associated peptidase (SRAP) Y880_RS06330 8b7aa5c71418c67a539e4241b00bd543 75 Pfam PF11174 Protein of unknown function (DUF2970) 15 70 3.0E-25 T 29-03-2018 IPR021344 Protein of unknown function DUF2970 Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 Gene3D G3DSA:3.40.50.720 1 262 8.7E-66 T 29-03-2018 Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.1E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.1E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.1E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.1E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.1E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 SUPERFAMILY SSF51735 1 278 1.15E-70 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 193 9.7E-5 T 29-03-2018 Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 Pfam PF00106 short chain dehydrogenase 7 201 2.6E-51 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS04700 85ecb498dd88d559e903100573a5b5ad 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS00755 4d6d5ebb54053b8c61f6ae81ef807e8c 220 Pfam PF13835 Domain of unknown function (DUF4194) 29 194 5.8E-31 T 29-03-2018 IPR025449 Protein of unknown function DUF4194 Y880_RS20070 776552ad6ec9b88aa457ab6f12c2707d 80 Gene3D G3DSA:1.10.10.10 1 76 4.6E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20070 776552ad6ec9b88aa457ab6f12c2707d 80 SUPERFAMILY SSF46785 1 72 8.59E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS20070 776552ad6ec9b88aa457ab6f12c2707d 80 Pfam PF09012 FeoC like transcriptional regulator 3 67 6.2E-14 T 29-03-2018 IPR015102 Transcriptional regulator HTH-type, FeoC Y880_RS09710 f8cbd582f18607ca7153bf312ac1ce0e 303 Pfam PF13557 Putative MetA-pathway of phenol degradation 55 299 1.5E-56 T 29-03-2018 IPR025737 MetA-pathway of phenol degradation, putative Y880_RS08390 59faacdc85321e5955d331d6d7bc74e1 291 SUPERFAMILY SSF53474 8 276 5.77E-53 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS08390 59faacdc85321e5955d331d6d7bc74e1 291 Pfam PF00561 alpha/beta hydrolase fold 26 273 3.4E-20 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS08390 59faacdc85321e5955d331d6d7bc74e1 291 Gene3D G3DSA:3.40.50.1820 9 283 2.3E-41 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS12185 1d1406d73f05194de0e9bd97889cbb3d 402 Pfam PF06224 Winged helix DNA-binding domain 38 379 2.1E-82 T 29-03-2018 IPR009351 Protein of unknown function DUF1006 Y880_RS22350 acb062b262094ee3000666a2e93a01e9 560 Pfam PF02652 L-lactate permease 16 548 1.4E-203 T 29-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Y880_RS22350 acb062b262094ee3000666a2e93a01e9 560 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 7 552 3.4E-221 T 29-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Y880_RS15105 a195eccf3e3de5067f81a29ccf4dc601 377 Pfam PF12698 ABC-2 family transporter protein 22 361 5.1E-28 T 29-03-2018 Y880_RS15105 a195eccf3e3de5067f81a29ccf4dc601 377 Gene3D G3DSA:3.40.1710.10 34 194 1.9E-27 T 29-03-2018 Y880_RS29370 5fd7e40441af18335a87bed5e760b199 429 Pfam PF01266 FAD dependent oxidoreductase 35 385 1.8E-53 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS29370 5fd7e40441af18335a87bed5e760b199 429 Gene3D G3DSA:3.50.50.60 24 414 1.9E-34 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS29370 5fd7e40441af18335a87bed5e760b199 429 SUPERFAMILY SSF51905 33 335 1.67E-42 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS20130 5de040aaeb7aed16bfe2a68db3d34f3d 300 ProSitePatterns PS00018 EF-hand calcium-binding domain. 212 224 - T 29-03-2018 IPR018247 EF-Hand 1, calcium-binding site Y880_RS20130 5de040aaeb7aed16bfe2a68db3d34f3d 300 Pfam PF12483 E3 Ubiquitin ligase 83 183 1.5E-9 T 29-03-2018 IPR022170 E3 Ubiquitin ligase, GIDE-type GO:0004842|GO:0006996|GO:0016567 Reactome: R-HSA-5689880 Y880_RS18440 bf1acb9e66c69d9c0c711d4f67be99f6 335 Pfam PF14238 Domain of unknown function (DUF4340) 70 249 3.1E-13 T 29-03-2018 IPR025641 Domain of unknown function DUF4340 Y880_RS15310 451706c194a580dc049d7c1b2a7d66e3 103 Pfam PF06844 Protein of unknown function (DUF1244) 32 97 2.7E-38 T 29-03-2018 IPR023163 SMc04008-like domain Y880_RS15310 451706c194a580dc049d7c1b2a7d66e3 103 Gene3D G3DSA:1.10.3340.10 6 88 9.3E-44 T 29-03-2018 IPR023163 SMc04008-like domain Y880_RS15310 451706c194a580dc049d7c1b2a7d66e3 103 SUPERFAMILY SSF158757 5 82 4.05E-38 T 29-03-2018 IPR023163 SMc04008-like domain Y880_RS15635 e24518648603b9f9cd4150c5dd330f8e 494 SUPERFAMILY SSF53720 7 484 8.51E-161 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS15635 e24518648603b9f9cd4150c5dd330f8e 494 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Y880_RS15635 e24518648603b9f9cd4150c5dd330f8e 494 Gene3D G3DSA:3.40.309.10 268 465 1.3E-68 T 29-03-2018 Y880_RS15635 e24518648603b9f9cd4150c5dd330f8e 494 Gene3D G3DSA:3.40.605.10 3 267 3.3E-90 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS15635 e24518648603b9f9cd4150c5dd330f8e 494 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Y880_RS15635 e24518648603b9f9cd4150c5dd330f8e 494 Pfam PF00171 Aldehyde dehydrogenase family 17 478 1.9E-168 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS08265 672de0635b10cb743fe945b377aed427 319 Pfam PF04909 Amidohydrolase 10 300 2.9E-39 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 Y880_RS08265 672de0635b10cb743fe945b377aed427 319 SUPERFAMILY SSF51556 8 300 6.46E-46 T 29-03-2018 IPR032466 Metal-dependent hydrolase Y880_RS08265 672de0635b10cb743fe945b377aed427 319 Gene3D G3DSA:3.20.20.140 1 311 1.1E-32 T 29-03-2018 Y880_RS15030 c262e2ba9ae710c86af2bfb531827c04 108 Pfam PF03869 Arc-like DNA binding domain 13 62 1.4E-28 T 29-03-2018 IPR005569 Arc-like DNA binding domain GO:0003677 Y880_RS15030 c262e2ba9ae710c86af2bfb531827c04 108 SUPERFAMILY SSF47598 14 59 1.04E-13 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y880_RS15030 c262e2ba9ae710c86af2bfb531827c04 108 Gene3D G3DSA:1.10.1220.10 3 107 1.5E-24 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Y880_RS25440 77ef3dabcf9509a9d627e8c33e4c0748 299 Pfam PF01551 Peptidase family M23 177 271 2.6E-24 T 29-03-2018 IPR016047 Peptidase M23 Y880_RS25440 77ef3dabcf9509a9d627e8c33e4c0748 299 Pfam PF13511 Domain of unknown function (DUF4124) 11 44 2.1E-10 T 29-03-2018 IPR025392 Domain of unknown function DUF4124 Y880_RS25440 77ef3dabcf9509a9d627e8c33e4c0748 299 Gene3D G3DSA:2.70.70.10 56 294 6.0E-30 T 29-03-2018 Y880_RS25440 77ef3dabcf9509a9d627e8c33e4c0748 299 SUPERFAMILY SSF51261 159 271 5.75E-30 T 29-03-2018 IPR011055 Duplicated hybrid motif Y880_RS02290 9e8069b46d9037c258888f3764951fc8 255 SUPERFAMILY SSF53448 1 242 3.34E-56 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02290 9e8069b46d9037c258888f3764951fc8 255 Gene3D G3DSA:3.90.550.10 1 243 2.0E-39 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS02290 9e8069b46d9037c258888f3764951fc8 255 Pfam PF02348 Cytidylyltransferase 4 208 3.4E-36 T 29-03-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Y880_RS28225 7ecf07cddf9b19006018c4eefa038d4c 221 Gene3D G3DSA:3.90.850.10 2 221 9.0E-69 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS28225 7ecf07cddf9b19006018c4eefa038d4c 221 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 20 220 5.7E-54 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS28225 7ecf07cddf9b19006018c4eefa038d4c 221 SUPERFAMILY SSF56529 12 220 1.26E-65 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 Pfam PF02803 Thiolase, C-terminal domain 276 399 3.3E-42 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 PIRSF PIRSF000429 1 401 8.9E-122 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 Gene3D G3DSA:3.40.47.10 274 397 1.8E-32 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 SUPERFAMILY SSF53901 3 274 6.09E-66 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 SUPERFAMILY SSF53901 276 399 1.87E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 8.5E-121 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 Pfam PF00108 Thiolase, N-terminal domain 5 265 2.3E-61 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Y880_RS16090 47bdbaa9d50c6390715100d5cb36f4d3 401 Gene3D G3DSA:3.40.47.10 1 273 1.5E-46 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 Y880_RS22475 b472f8c346b384d33dea0b47473aabf3 160 Pfam PF00583 Acetyltransferase (GNAT) family 36 133 5.3E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS22475 b472f8c346b384d33dea0b47473aabf3 160 Gene3D G3DSA:3.40.630.30 1 160 1.7E-28 T 29-03-2018 Y880_RS22475 b472f8c346b384d33dea0b47473aabf3 160 SUPERFAMILY SSF55729 1 158 1.63E-35 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS02450 8df6c76470c7ea553c3fe0997492cc67 774 Pfam PF00884 Sulfatase 224 501 1.4E-36 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS02450 8df6c76470c7ea553c3fe0997492cc67 774 SUPERFAMILY SSF53649 222 534 9.76E-47 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS02450 8df6c76470c7ea553c3fe0997492cc67 774 Gene3D G3DSA:3.40.720.10 223 535 1.2E-31 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS17885 bc7153595e936b1b9ccf8d92441a92dd 488 PIRSF PIRSF006446 2 464 2.5E-234 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Y880_RS17885 bc7153595e936b1b9ccf8d92441a92dd 488 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 439 1.5E-168 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Y880_RS21640 9e91c467c2e1334779d8898da4209666 457 Gene3D G3DSA:1.20.1250.20 228 438 1.0E-19 T 29-03-2018 Y880_RS21640 9e91c467c2e1334779d8898da4209666 457 Pfam PF07690 Major Facilitator Superfamily 21 381 2.1E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS21640 9e91c467c2e1334779d8898da4209666 457 Gene3D G3DSA:1.20.1250.20 10 214 2.6E-31 T 29-03-2018 Y880_RS21640 9e91c467c2e1334779d8898da4209666 457 SUPERFAMILY SSF103473 9 436 6.15E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS23765 c2d5f77a7fc554dbda38a276d6770d0e 207 PIRSF PIRSF016482 1 206 1.7E-92 T 29-03-2018 IPR007445 Pilus assembly protein, PilO Y880_RS23765 c2d5f77a7fc554dbda38a276d6770d0e 207 Gene3D G3DSA:1.10.287.540 67 102 5.9E-20 T 29-03-2018 Y880_RS23765 c2d5f77a7fc554dbda38a276d6770d0e 207 Gene3D G3DSA:3.30.70.60 103 207 5.6E-26 T 29-03-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Y880_RS23765 c2d5f77a7fc554dbda38a276d6770d0e 207 Pfam PF04350 Pilus assembly protein, PilO 58 202 2.2E-56 T 29-03-2018 IPR007445 Pilus assembly protein, PilO Y880_RS02900 bb50db280a518f8a868ae1ddccfb1978 135 Gene3D G3DSA:3.30.300.20 1 134 1.4E-33 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta Y880_RS02900 bb50db280a518f8a868ae1ddccfb1978 135 Pfam PF02566 OsmC-like protein 36 130 4.0E-20 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS02900 bb50db280a518f8a868ae1ddccfb1978 135 SUPERFAMILY SSF82784 10 133 1.07E-35 T 29-03-2018 IPR003718 OsmC/Ohr family Y880_RS13655 bcf5bb6b7b5d8d3e70c8b696b6733364 149 Pfam PF00011 Hsp20/alpha crystallin family 44 140 3.3E-17 T 29-03-2018 IPR002068 Alpha crystallin/Hsp20 domain Y880_RS13655 bcf5bb6b7b5d8d3e70c8b696b6733364 149 Gene3D G3DSA:2.60.40.790 10 140 3.1E-22 T 29-03-2018 IPR008978 HSP20-like chaperone Y880_RS13655 bcf5bb6b7b5d8d3e70c8b696b6733364 149 SUPERFAMILY SSF49764 11 141 2.51E-21 T 29-03-2018 IPR008978 HSP20-like chaperone Y880_RS28530 e667c065fcbf385370f4db841f3527ba 335 PIRSF PIRSF003097 37 331 6.2E-64 T 29-03-2018 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 Y880_RS28090 591ee3aba32d0d994c122ff495812d6e 292 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 5 282 1.8E-147 T 29-03-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 Y880_RS28090 591ee3aba32d0d994c122ff495812d6e 292 Pfam PF00795 Carbon-nitrogen hydrolase 6 266 4.5E-53 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS28090 591ee3aba32d0d994c122ff495812d6e 292 SUPERFAMILY SSF56317 3 283 8.76E-84 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS28090 591ee3aba32d0d994c122ff495812d6e 292 Gene3D G3DSA:3.60.110.10 4 282 1.4E-79 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS23225 b818a2934907aa071f6e4c7c519b75b1 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 6 60 3.1E-21 T 29-03-2018 IPR019201 Protein of unknown function DUF2065 Y880_RS24045 fe3f875d090b4cb058587c25daa3d26c 467 PIRSF PIRSF006060 1 459 4.5E-70 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS24045 fe3f875d090b4cb058587c25daa3d26c 467 Pfam PF00324 Amino acid permease 15 446 3.9E-102 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS24045 fe3f875d090b4cb058587c25daa3d26c 467 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS04505 8e0a4aab1926aa5bf6fb80c4d45ebfd6 109 PIRSF PIRSF029416 1 109 1.7E-51 T 29-03-2018 IPR016919 Uncharacterised conserved protein UCP029416, tyrosine-protein phosphatase, Mlr4629 Y880_RS04505 8e0a4aab1926aa5bf6fb80c4d45ebfd6 109 Gene3D G3DSA:3.40.50.2300 3 40 3.0E-9 T 29-03-2018 Y880_RS04505 8e0a4aab1926aa5bf6fb80c4d45ebfd6 109 SUPERFAMILY SSF52788 1 107 2.49E-19 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily Y880_RS04505 8e0a4aab1926aa5bf6fb80c4d45ebfd6 109 Gene3D G3DSA:3.40.50.2300 41 102 7.0E-4 T 29-03-2018 Y880_RS04550 1a63a9291c1ed078164252e2f5b61aad 171 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 13 171 9.2E-69 T 29-03-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y880_RS04550 1a63a9291c1ed078164252e2f5b61aad 171 SUPERFAMILY SSF158694 11 171 2.62E-52 T 29-03-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y880_RS04550 1a63a9291c1ed078164252e2f5b61aad 171 Pfam PF09349 OHCU decarboxylase 11 169 1.2E-45 T 29-03-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y880_RS04550 1a63a9291c1ed078164252e2f5b61aad 171 Gene3D G3DSA:1.10.3330.10 17 171 1.1E-49 T 29-03-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y880_RS07690 de0810b81501f4727a8cf868a1d73450 296 SUPERFAMILY SSF103481 39 142 1.28E-14 T 29-03-2018 Y880_RS07690 de0810b81501f4727a8cf868a1d73450 296 Pfam PF00892 EamA-like transporter family 151 284 1.9E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS07690 de0810b81501f4727a8cf868a1d73450 296 Pfam PF00892 EamA-like transporter family 7 138 1.5E-24 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS07690 de0810b81501f4727a8cf868a1d73450 296 SUPERFAMILY SSF103481 189 287 3.01E-7 T 29-03-2018 Y880_RS22720 ab7f80817cb4d4f02d0fc7e8434435ca 356 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 34 356 9.2E-163 T 29-03-2018 IPR016936 Uncharacterised conserved protein UCP029693 Y880_RS22720 ab7f80817cb4d4f02d0fc7e8434435ca 356 PIRSF PIRSF029693 1 356 1.7E-220 T 29-03-2018 IPR016936 Uncharacterised conserved protein UCP029693 Y880_RS16515 1861c74686f0abfbeb81877e3e5ff3b6 307 SUPERFAMILY SSF52540 2 231 3.48E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS16515 1861c74686f0abfbeb81877e3e5ff3b6 307 Gene3D G3DSA:3.40.50.300 1 242 1.4E-59 T 29-03-2018 Y880_RS16515 1861c74686f0abfbeb81877e3e5ff3b6 307 SMART SM00382 26 216 3.0E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS16515 1861c74686f0abfbeb81877e3e5ff3b6 307 Pfam PF00005 ABC transporter 18 160 1.2E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS01895 973f54e7254fb917eaecf302b3ea4a6f 253 Gene3D G3DSA:3.90.226.10 4 214 7.3E-55 T 29-03-2018 Y880_RS01895 973f54e7254fb917eaecf302b3ea4a6f 253 Gene3D G3DSA:1.10.12.10 215 253 5.8E-14 T 29-03-2018 IPR014748 Crontonase, C-terminal Y880_RS01895 973f54e7254fb917eaecf302b3ea4a6f 253 SUPERFAMILY SSF52096 4 252 3.78E-68 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS01895 973f54e7254fb917eaecf302b3ea4a6f 253 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 252 2.5E-50 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 SUPERFAMILY SSF48452 30 135 1.59E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 Gene3D G3DSA:1.25.40.10 20 161 2.2E-17 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 21 154 1.5E-43 T 29-03-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD GO:0006950 Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 PIRSF PIRSF003165 1 162 1.4E-59 T 29-03-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 48 67 2.8E-48 T 29-03-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD GO:0006950 Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 23 46 2.8E-48 T 29-03-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD GO:0006950 Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 104 126 2.8E-48 T 29-03-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD GO:0006950 Y880_RS05605 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 72 94 2.8E-48 T 29-03-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD GO:0006950 Y880_RS26120 3b44a11f3db57a4359ef986ce3aa26ea 671 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 509 670 6.9E-48 T 29-03-2018 IPR000160 GGDEF domain Y880_RS26120 3b44a11f3db57a4359ef986ce3aa26ea 671 Gene3D G3DSA:3.30.70.270 509 671 5.5E-58 T 29-03-2018 Y880_RS26120 3b44a11f3db57a4359ef986ce3aa26ea 671 Pfam PF00990 Diguanylate cyclase, GGDEF domain 511 667 1.0E-46 T 29-03-2018 IPR000160 GGDEF domain Y880_RS26120 3b44a11f3db57a4359ef986ce3aa26ea 671 SUPERFAMILY SSF55073 516 669 2.04E-48 T 29-03-2018 IPR029787 Nucleotide cyclase Y880_RS26120 3b44a11f3db57a4359ef986ce3aa26ea 671 SMART SM00267 501 671 1.7E-56 T 29-03-2018 IPR000160 GGDEF domain Y880_RS26120 3b44a11f3db57a4359ef986ce3aa26ea 671 Gene3D G3DSA:1.20.58.60 2 508 9.5E-6 T 29-03-2018 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 56 90 5.8E-6 T 29-03-2018 IPR011096 FTP domain Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 Gene3D G3DSA:1.10.390.10 350 498 1.2E-43 T 29-03-2018 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 Gene3D G3DSA:3.10.450.40 122 193 0.0018 T 29-03-2018 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 Pfam PF03413 Peptidase propeptide and YPEB domain 123 192 1.7E-8 T 29-03-2018 IPR025711 PepSY domain Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 208 345 3.7E-34 T 29-03-2018 IPR013856 Peptidase M4 domain GO:0004222 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 SUPERFAMILY SSF55486 199 494 1.41E-88 T 29-03-2018 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 419 435 5.8E-26 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 336 352 5.8E-26 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 357 368 5.8E-26 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 302 322 5.8E-26 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 348 492 4.6E-37 T 29-03-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 Y880_RS16775 435e42b9578de1067aa7acde72e91a4d 498 Gene3D G3DSA:3.10.170.10 198 349 1.9E-44 T 29-03-2018 Y880_RS17805 c2e87b80dbc7175007bb15be503aeea5 150 SUPERFAMILY SSF54690 3 148 5.1E-51 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS17805 c2e87b80dbc7175007bb15be503aeea5 150 Pfam PF02391 MoaE protein 6 119 2.5E-34 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS17805 c2e87b80dbc7175007bb15be503aeea5 150 Gene3D G3DSA:3.90.1170.40 1 148 3.2E-55 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y880_RS13415 7f157a76e1b0bb56363c93d819c41ec7 654 Pfam PF06980 Protein of unknown function (DUF1302) 40 654 2.3E-185 T 29-03-2018 IPR010727 Protein of unknown function DUF1302 Y880_RS10420 d24551fa3b7258a6b3f8afe0d4fed805 201 Gene3D G3DSA:2.60.120.10 46 188 8.7E-29 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS10420 d24551fa3b7258a6b3f8afe0d4fed805 201 Pfam PF05995 Cysteine dioxygenase type I 45 160 6.2E-8 T 29-03-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 Y880_RS10420 d24551fa3b7258a6b3f8afe0d4fed805 201 Gene3D G3DSA:1.20.5.440 5 45 3.9E-15 T 29-03-2018 Y880_RS10420 d24551fa3b7258a6b3f8afe0d4fed805 201 SUPERFAMILY SSF51182 9 196 4.69E-55 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS15085 65a10c61680cfabb33666718e97219fa 178 SUPERFAMILY SSF160387 66 172 3.66E-32 T 29-03-2018 Y880_RS15085 65a10c61680cfabb33666718e97219fa 178 Pfam PF05573 NosL 19 163 3.3E-51 T 29-03-2018 IPR008719 Nitrous oxide reductase accessory protein NosL Y880_RS03660 df3c6915dd6adc66a838a695f058eb1c 249 SUPERFAMILY SSF52833 61 199 5.15E-9 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS03660 df3c6915dd6adc66a838a695f058eb1c 249 Pfam PF05988 Bacterial protein of unknown function (DUF899) 6 234 1.4E-96 T 29-03-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like Y880_RS03660 df3c6915dd6adc66a838a695f058eb1c 249 Gene3D G3DSA:3.40.30.10 19 203 1.6E-18 T 29-03-2018 Y880_RS00810 6b7245b80e08ae3ded426cb73e79411d 508 Gene3D G3DSA:3.40.50.2000 25 178 8.5E-13 T 29-03-2018 Y880_RS00810 6b7245b80e08ae3ded426cb73e79411d 508 SUPERFAMILY SSF53756 34 350 2.67E-39 T 29-03-2018 Y880_RS00810 6b7245b80e08ae3ded426cb73e79411d 508 Gene3D G3DSA:3.40.50.2000 184 353 1.1E-19 T 29-03-2018 Y880_RS00810 6b7245b80e08ae3ded426cb73e79411d 508 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 99 302 3.1E-9 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 Y880_RS07560 663d0f04147a00b241f66a7ac055279a 634 SUPERFAMILY SSF46626 473 495 5.1E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07560 663d0f04147a00b241f66a7ac055279a 634 SUPERFAMILY SSF46626 354 375 5.1E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07560 663d0f04147a00b241f66a7ac055279a 634 SUPERFAMILY SSF46626 527 571 5.1E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07560 663d0f04147a00b241f66a7ac055279a 634 SUPERFAMILY SSF46626 615 634 5.1E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07560 663d0f04147a00b241f66a7ac055279a 634 Gene3D G3DSA:1.10.760.10 344 634 2.0E-24 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS07560 663d0f04147a00b241f66a7ac055279a 634 SUPERFAMILY SSF46626 355 421 6.24E-5 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS25185 c3988557fcbad409a3b4d72cd3f2748d 120 Gene3D G3DSA:2.60.120.10 3 116 3.7E-16 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS25185 c3988557fcbad409a3b4d72cd3f2748d 120 Pfam PF05899 Protein of unknown function (DUF861) 41 113 3.1E-23 T 29-03-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y880_RS25185 c3988557fcbad409a3b4d72cd3f2748d 120 SUPERFAMILY SSF51182 16 116 1.11E-20 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS21130 b1c3b0acc8a50c20fc6a36e124eced9e 169 TIGRFAM TIGR00077 lspA: signal peptidase II 10 162 3.3E-42 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Y880_RS21130 b1c3b0acc8a50c20fc6a36e124eced9e 169 Pfam PF01252 Signal peptidase (SPase) II 16 158 3.3E-39 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Y880_RS21130 b1c3b0acc8a50c20fc6a36e124eced9e 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 164 17.719 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Y880_RS21130 b1c3b0acc8a50c20fc6a36e124eced9e 169 ProSitePatterns PS00855 Signal peptidases II signature. 105 117 - T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Y880_RS21130 b1c3b0acc8a50c20fc6a36e124eced9e 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 102 117 5.1E-19 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Y880_RS21130 b1c3b0acc8a50c20fc6a36e124eced9e 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 139 155 5.1E-19 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Y880_RS21130 b1c3b0acc8a50c20fc6a36e124eced9e 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 54 62 5.1E-19 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Y880_RS06895 f1c15c935122296d21b9d1c9b202b9b6 332 Gene3D G3DSA:1.10.3470.10 48 327 4.1E-26 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS06895 f1c15c935122296d21b9d1c9b202b9b6 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 318 1.0E-47 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS26035 a9fc1af32f357d354bea54de542c22fd 266 SUPERFAMILY SSF53850 53 253 3.01E-19 T 29-03-2018 Y880_RS26035 a9fc1af32f357d354bea54de542c22fd 266 Gene3D G3DSA:3.40.190.10 30 257 3.7E-10 T 29-03-2018 Y880_RS26440 3a62ae670673f7cf5dc1dbe59548eca0 313 Gene3D G3DSA:2.60.120.330 24 288 7.1E-30 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS26440 3a62ae670673f7cf5dc1dbe59548eca0 313 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 157 250 1.4E-7 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS26440 3a62ae670673f7cf5dc1dbe59548eca0 313 SUPERFAMILY SSF51197 33 283 4.94E-27 T 29-03-2018 Y880_RS06100 28982af7c21d7cea4b961a8c14ad9c2b 73 Gene3D G3DSA:3.40.50.2300 1 72 1.3E-4 T 29-03-2018 Y880_RS07835 423df69b00916ee003ad1a83aa849713 170 Gene3D G3DSA:3.40.630.30 6 142 2.1E-9 T 29-03-2018 Y880_RS07835 423df69b00916ee003ad1a83aa849713 170 SUPERFAMILY SSF55729 34 137 7.39E-10 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS02925 eecd4b065dbfd2e52b40178ea9a202fe 499 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 57 4.0E-6 T 29-03-2018 Y880_RS02925 eecd4b065dbfd2e52b40178ea9a202fe 499 Pfam PF00743 Flavin-binding monooxygenase-like 82 217 9.4E-9 T 29-03-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 Y880_RS02925 eecd4b065dbfd2e52b40178ea9a202fe 499 Gene3D G3DSA:3.50.50.60 6 168 1.2E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS02925 eecd4b065dbfd2e52b40178ea9a202fe 499 Gene3D G3DSA:3.50.50.60 169 431 2.2E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS02925 eecd4b065dbfd2e52b40178ea9a202fe 499 SUPERFAMILY SSF51905 4 386 5.94E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS26965 3d6a61c4751d178f3ef6c5614f3645bd 570 Gene3D G3DSA:3.90.1580.10 125 357 6.2E-24 T 29-03-2018 Y880_RS26965 3d6a61c4751d178f3ef6c5614f3645bd 570 SUPERFAMILY SSF56436 127 186 2.59E-27 T 29-03-2018 IPR016187 C-type lectin fold Y880_RS26965 3d6a61c4751d178f3ef6c5614f3645bd 570 SUPERFAMILY SSF56436 214 360 2.59E-27 T 29-03-2018 IPR016187 C-type lectin fold Y880_RS26965 3d6a61c4751d178f3ef6c5614f3645bd 570 Pfam PF03781 Sulfatase-modifying factor enzyme 1 127 359 3.9E-30 T 29-03-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 SUPERFAMILY SSF53822 28 371 1.95E-91 T 29-03-2018 IPR028082 Periplasmic binding protein-like I Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 Gene3D G3DSA:3.40.50.2300 23 246 1.9E-52 T 29-03-2018 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 Gene3D G3DSA:3.40.50.2300 279 370 3.9E-6 T 29-03-2018 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 1.1E-23 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 1.1E-23 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 283 296 1.1E-23 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 1.1E-23 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 334 349 1.1E-23 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y880_RS23080 a4fab06ace52f3f354020c741b0d5e45 374 Pfam PF13458 Periplasmic binding protein 29 368 1.1E-64 T 29-03-2018 IPR028081 Leucine-binding protein domain Y880_RS06625 ab0645a58c6af25131a21a2e635c4d63 424 Pfam PF00487 Fatty acid desaturase 86 357 1.1E-7 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y880_RS21635 2160c2cd0c045ccf374f03203434f3a2 315 Pfam PF05229 Spore Coat Protein U domain 185 311 3.9E-32 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS21635 2160c2cd0c045ccf374f03203434f3a2 315 Pfam PF05229 Spore Coat Protein U domain 14 160 5.6E-25 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS21635 2160c2cd0c045ccf374f03203434f3a2 315 SMART SM00972 257 312 1.9E-15 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS21635 2160c2cd0c045ccf374f03203434f3a2 315 SMART SM00972 97 162 5.0E-16 T 29-03-2018 IPR007893 Spore coat protein U Y880_RS10195 48a389bc63449700b786a6d897481951 275 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 14 274 45.288 T 29-03-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y880_RS10195 48a389bc63449700b786a6d897481951 275 SUPERFAMILY SSF53335 16 265 1.02E-26 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS10195 48a389bc63449700b786a6d897481951 275 Gene3D G3DSA:1.10.150.290 198 253 2.6E-26 T 29-03-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y880_RS10195 48a389bc63449700b786a6d897481951 275 Gene3D G3DSA:3.40.50.150 11 197 2.6E-23 T 29-03-2018 Y880_RS10195 48a389bc63449700b786a6d897481951 275 Pfam PF13649 Methyltransferase domain 47 136 1.8E-10 T 29-03-2018 Y880_RS17780 bd667f403646143f3c748a140e959bd7 171 Gene3D G3DSA:3.30.1050.10 27 138 1.8E-15 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS17780 bd667f403646143f3c748a140e959bd7 171 PIRSF PIRSF025550 1 171 1.3E-67 T 29-03-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT Y880_RS17780 bd667f403646143f3c748a140e959bd7 171 SUPERFAMILY SSF55718 42 135 4.47E-17 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS17780 bd667f403646143f3c748a140e959bd7 171 Pfam PF02036 SCP-2 sterol transfer family 38 131 1.4E-13 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS10005 df1a8bf36e0df3af185854ccb0067df5 477 Gene3D G3DSA:3.30.2290.10 5 224 1.9E-34 T 29-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain Y880_RS10005 df1a8bf36e0df3af185854ccb0067df5 477 SUPERFAMILY SSF111283 3 472 7.85E-95 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS10005 df1a8bf36e0df3af185854ccb0067df5 477 Pfam PF01523 Putative modulator of DNA gyrase 21 321 8.9E-43 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y880_RS19905 989604be29848654d878af3457acc016 119 Pfam PF07238 PilZ domain 5 98 2.9E-5 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS19905 989604be29848654d878af3457acc016 119 Gene3D G3DSA:2.40.10.220 8 119 1.9E-6 T 29-03-2018 Y880_RS27600 25527ddf6c1c6f388c2e050e20567018 102 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 11 94 1.6E-35 T 29-03-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 612 4.6E-230 T 29-03-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 3.4E-9 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 360 382 3.4E-9 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 419 441 3.4E-9 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 60 84 3.4E-9 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 Pfam PF00361 Proton-conducting membrane transporter 136 427 1.1E-90 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 123 4.5E-22 T 29-03-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 5.7E-55 T 29-03-2018 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 5.7E-55 T 29-03-2018 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 5.7E-55 T 29-03-2018 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 227 248 5.7E-55 T 29-03-2018 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 5.7E-55 T 29-03-2018 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 249 275 5.7E-55 T 29-03-2018 Y880_RS10655 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 317 329 5.7E-55 T 29-03-2018 Y880_RS00690 aeea211ec56f3047d789c55fae5b70f3 92 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 10 89 4.9E-13 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS00690 aeea211ec56f3047d789c55fae5b70f3 92 SUPERFAMILY SSF55298 7 91 8.01E-24 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS00690 aeea211ec56f3047d789c55fae5b70f3 92 Gene3D G3DSA:3.30.1330.40 1 92 4.4E-14 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y880_RS23095 d24b93efef5ae130d4a834392501f041 231 SUPERFAMILY SSF55811 9 144 7.07E-22 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 Y880_RS23095 d24b93efef5ae130d4a834392501f041 231 Gene3D G3DSA:1.10.10.10 147 217 6.1E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23095 d24b93efef5ae130d4a834392501f041 231 Gene3D G3DSA:3.90.79.10 3 146 8.1E-24 T 29-03-2018 Y880_RS23095 d24b93efef5ae130d4a834392501f041 231 SUPERFAMILY SSF46785 151 217 2.58E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03790 d3d92ca606d03a4eb5ca3bceda7f06e3 484 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 15 474 3.8E-94 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 Y880_RS03790 d3d92ca606d03a4eb5ca3bceda7f06e3 484 Gene3D G3DSA:1.20.1600.10 19 480 2.1E-89 T 29-03-2018 Y880_RS03790 d3d92ca606d03a4eb5ca3bceda7f06e3 484 Pfam PF02321 Outer membrane efflux protein 293 459 3.2E-24 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS03790 d3d92ca606d03a4eb5ca3bceda7f06e3 484 Pfam PF02321 Outer membrane efflux protein 66 261 5.4E-24 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS03790 d3d92ca606d03a4eb5ca3bceda7f06e3 484 SUPERFAMILY SSF56954 3 475 2.62E-99 T 29-03-2018 Y880_RS06560 507b335de04ca5c3e6bf9b1010eecac4 107 SUPERFAMILY SSF103481 4 104 2.48E-22 T 29-03-2018 Y880_RS06560 507b335de04ca5c3e6bf9b1010eecac4 107 Pfam PF00893 Small Multidrug Resistance protein 1 93 6.4E-29 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 4 329 40.501 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 SMART SM00729 13 216 7.8E-12 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 Pfam PF04055 Radical SAM superfamily 18 177 6.8E-30 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 329 1.1E-111 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 29-03-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 Reactome: R-HSA-947581 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 Pfam PF13353 4Fe-4S single cluster domain 20 108 7.0E-8 T 29-03-2018 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 Gene3D G3DSA:3.20.20.70 1 329 2.8E-71 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 Pfam PF06463 Molybdenum Cofactor Synthesis C 184 312 3.2E-38 T 29-03-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 Reactome: R-HSA-947581 Y880_RS17560 016fcd2c3fb6f303c1f15860b5e371cb 329 SUPERFAMILY SSF102114 5 280 1.57E-74 T 29-03-2018 Y880_RS03215 10e76dbc4be2764b92b349d00e1a6a0d 314 SUPERFAMILY SSF47413 73 121 2.88E-5 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS03215 10e76dbc4be2764b92b349d00e1a6a0d 314 Pfam PF13560 Helix-turn-helix domain 49 128 1.3E-14 T 29-03-2018 Y880_RS03215 10e76dbc4be2764b92b349d00e1a6a0d 314 SMART SM00530 53 125 6.9E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS03215 10e76dbc4be2764b92b349d00e1a6a0d 314 Gene3D G3DSA:1.10.260.40 43 130 1.6E-13 T 29-03-2018 Y880_RS15600 bab8ec6990e7fb8e9cfa324ffdadaa21 406 Gene3D G3DSA:2.40.160.10 30 403 2.5E-25 T 29-03-2018 Y880_RS15600 bab8ec6990e7fb8e9cfa324ffdadaa21 406 SUPERFAMILY SSF56935 45 356 1.94E-9 T 29-03-2018 Y880_RS12980 957900ece4e0a1f4e35a8b29af1ddadb 224 PIRSF PIRSF006102 4 214 2.1E-65 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS12980 957900ece4e0a1f4e35a8b29af1ddadb 224 Pfam PF02508 Rnf-Nqr subunit, membrane protein 10 196 7.2E-60 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Y880_RS12980 957900ece4e0a1f4e35a8b29af1ddadb 224 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 208 1.8E-108 T 29-03-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 Y880_RS12980 957900ece4e0a1f4e35a8b29af1ddadb 224 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 3 208 36.649 T 29-03-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 Y880_RS29850 c8657bdeb8e5ec5592172dc597b80257 329 SUPERFAMILY SSF69279 4 173 1.08E-27 T 29-03-2018 Y880_RS29850 c8657bdeb8e5ec5592172dc597b80257 329 Gene3D G3DSA:3.55.50.10 102 183 8.5E-4 T 29-03-2018 Y880_RS29850 c8657bdeb8e5ec5592172dc597b80257 329 Pfam PF05954 Phage late control gene D protein (GPD) 38 312 4.8E-22 T 29-03-2018 Y880_RS02930 c09abf35cb0ad3e3321bf16f992eae49 311 Gene3D G3DSA:3.40.250.10 187 311 2.9E-17 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS02930 c09abf35cb0ad3e3321bf16f992eae49 311 SMART SM00450 209 306 1.3E-8 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS02930 c09abf35cb0ad3e3321bf16f992eae49 311 Pfam PF00581 Rhodanese-like domain 209 302 1.1E-8 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS02930 c09abf35cb0ad3e3321bf16f992eae49 311 SUPERFAMILY SSF52821 192 308 3.8E-20 T 29-03-2018 IPR001763 Rhodanese-like domain Y880_RS02930 c09abf35cb0ad3e3321bf16f992eae49 311 Pfam PF09335 SNARE associated Golgi protein 29 155 4.1E-14 T 29-03-2018 IPR032816 SNARE associated Golgi protein Y880_RS23820 552271922f69bbeac47858b4d9079e14 177 Gene3D G3DSA:3.60.20.10 2 175 1.3E-27 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS23820 552271922f69bbeac47858b4d9079e14 177 PIRSF PIRSF039093 1 176 4.1E-84 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Y880_RS23820 552271922f69bbeac47858b4d9079e14 177 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 173 41.314 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Y880_RS23820 552271922f69bbeac47858b4d9079e14 177 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 173 4.6E-84 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Y880_RS23820 552271922f69bbeac47858b4d9079e14 177 SUPERFAMILY SSF56235 2 173 1.87E-55 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y880_RS23820 552271922f69bbeac47858b4d9079e14 177 Pfam PF00227 Proteasome subunit 2 171 6.0E-21 T 29-03-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-446652|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8941858|Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y880_RS02715 b8281ba8a6f88ba146bfef2eeedd1508 223 Pfam PF08787 Alginate lyase 3 222 2.4E-52 T 29-03-2018 IPR014895 Alginate lyase 2 Y880_RS02715 b8281ba8a6f88ba146bfef2eeedd1508 223 SUPERFAMILY SSF49899 3 222 7.75E-76 T 29-03-2018 IPR013320 Concanavalin A-like lectin/glucanase domain Y880_RS02715 b8281ba8a6f88ba146bfef2eeedd1508 223 Gene3D G3DSA:2.60.120.200 2 223 6.4E-67 T 29-03-2018 Y880_RS25250 d827841c05fc580b247591227276558f 402 Gene3D G3DSA:3.20.20.10 35 269 1.1E-26 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS25250 d827841c05fc580b247591227276558f 402 SUPERFAMILY SSF51419 34 271 1.34E-19 T 29-03-2018 IPR029066 PLP-binding barrel Y880_RS25250 d827841c05fc580b247591227276558f 402 Pfam PF01168 Alanine racemase, N-terminal domain 33 271 5.3E-25 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y880_RS14600 27ed0d7a4b7695abe1f8414f12897926 200 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 16 194 3.4E-34 T 29-03-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like Y880_RS14600 27ed0d7a4b7695abe1f8414f12897926 200 SUPERFAMILY SSF51197 8 198 1.79E-63 T 29-03-2018 Y880_RS14600 27ed0d7a4b7695abe1f8414f12897926 200 Gene3D G3DSA:2.60.120.590 8 200 8.5E-51 T 29-03-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like Y880_RS27030 1505677bb7b9248868b4ab143d1a7cfb 498 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 19 493 3.3E-219 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS27030 1505677bb7b9248868b4ab143d1a7cfb 498 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 493 1.1E-190 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS19785 3abe343d471382412c5c9a76b0ff8765 421 SUPERFAMILY SSF52540 68 373 4.95E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS19785 3abe343d471382412c5c9a76b0ff8765 421 Pfam PF00437 Type II/IV secretion system protein 92 368 4.2E-91 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Y880_RS19785 3abe343d471382412c5c9a76b0ff8765 421 Gene3D G3DSA:3.40.50.300 185 387 1.1E-20 T 29-03-2018 Y880_RS19785 3abe343d471382412c5c9a76b0ff8765 421 Gene3D G3DSA:3.30.450.90 86 184 9.3E-38 T 29-03-2018 Y880_RS27760 624ed817f14cdeb5df6accf94e82eacc 133 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 3 124 3.9E-59 T 29-03-2018 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 Y880_RS27760 624ed817f14cdeb5df6accf94e82eacc 133 SUPERFAMILY SSF69118 4 127 2.64E-38 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS27760 624ed817f14cdeb5df6accf94e82eacc 133 Gene3D G3DSA:1.20.1290.10 7 133 3.6E-37 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y880_RS27760 624ed817f14cdeb5df6accf94e82eacc 133 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 3.9E-24 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y880_RS17125 4bda00e77c1b9650439c68e5b9382ab8 190 TIGRFAM TIGR04061 AZL_007950_fam: AZL_007950 family protein 18 183 9.7E-71 T 29-03-2018 IPR023973 Conserved hypothetical protein CHP04061, AZL007950 Y880_RS26255 0faa83cef58f165d87c0dd7dd12d9935 262 SUPERFAMILY SSF56601 34 251 6.01E-36 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS26255 0faa83cef58f165d87c0dd7dd12d9935 262 Gene3D G3DSA:3.40.710.10 19 257 2.5E-27 T 29-03-2018 Y880_RS26255 0faa83cef58f165d87c0dd7dd12d9935 262 Pfam PF00905 Penicillin binding protein transpeptidase domain 55 249 2.3E-24 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y880_RS10185 0960db8cd37412694a2052edea6d4980 170 Gene3D G3DSA:3.10.450.160 90 170 6.4E-22 T 29-03-2018 Y880_RS10185 0960db8cd37412694a2052edea6d4980 170 Pfam PF11776 Nickel/cobalt transporter regulator 136 162 3.3E-6 T 29-03-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB Y880_RS12715 5559bdc47d6a4b689c9b8795436c98fb 60 TIGRFAM TIGR02459 CbtB: cobalt transporter subunit CbtB (proposed) 3 60 3.7E-25 T 29-03-2018 IPR012667 Cobalt transporter subunit CbtB, putative Y880_RS12715 5559bdc47d6a4b689c9b8795436c98fb 60 Pfam PF09489 Probable cobalt transporter subunit (CbtB) 11 60 4.7E-23 T 29-03-2018 IPR012667 Cobalt transporter subunit CbtB, putative Y880_RS16640 76fa3ddb33517a56549782d01c98fc13 431 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 21 412 3.9E-131 T 29-03-2018 IPR012656 Conserved hypothetical protein CHP02421, QEGLA Y880_RS16640 76fa3ddb33517a56549782d01c98fc13 431 SMART SM01154 41 419 8.4E-183 T 29-03-2018 IPR012548 Protein of unknown function DUF1704 Y880_RS16640 76fa3ddb33517a56549782d01c98fc13 431 Pfam PF08014 Domain of unknown function (DUF1704) 42 416 3.1E-133 T 29-03-2018 IPR012548 Protein of unknown function DUF1704 Y880_RS18335 9c215baddf377790e4cc84e52cf902f1 97 Pfam PF07119 Protein of unknown function (DUF1375) 10 83 4.2E-24 T 29-03-2018 IPR010780 Protein of unknown function DUF1375 Y880_RS02340 ba2eebbafed23a51cf8dbb3eb86f3c6e 97 Pfam PF05400 Flagellar protein FliT 18 93 5.3E-7 T 29-03-2018 IPR008622 Flagellar protein FliT Y880_RS28500 178925ba8553add23b6ab2ca36bd4d58 188 Gene3D G3DSA:3.40.1580.10 10 139 5.6E-4 T 29-03-2018 Y880_RS17180 b06bd4fdd0f7cd188b2b9187a5f81780 316 Gene3D G3DSA:3.20.20.100 1 316 1.8E-86 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS17180 b06bd4fdd0f7cd188b2b9187a5f81780 316 SUPERFAMILY SSF51430 1 313 2.62E-95 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS17180 b06bd4fdd0f7cd188b2b9187a5f81780 316 Pfam PF00248 Aldo/keto reductase family 16 313 4.4E-69 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain Y880_RS00270 81f601ca0eedf9ef7496a3803692fd5a 90 Pfam PF14375 Cysteine-rich CWC 30 82 1.8E-13 T 29-03-2018 IPR032720 Cysteine-rich CWC Y880_RS22125 20c5456432a0df61d8d9c9c76e8becca 266 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 4 264 1.6E-99 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS22125 20c5456432a0df61d8d9c9c76e8becca 266 SUPERFAMILY SSF51621 4 264 2.98E-101 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Y880_RS22125 20c5456432a0df61d8d9c9c76e8becca 266 PIRSF PIRSF000388 2 266 1.4E-97 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS22125 20c5456432a0df61d8d9c9c76e8becca 266 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 259 1.6E-105 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS22125 20c5456432a0df61d8d9c9c76e8becca 266 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 264 41.258 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y880_RS22125 20c5456432a0df61d8d9c9c76e8becca 266 Gene3D G3DSA:3.20.20.60 1 264 3.9E-78 T 29-03-2018 Y880_RS25200 c0ce0a9eee4b1ad24aef46da5268b0cf 526 Gene3D G3DSA:3.40.190.10 197 292 1.2E-24 T 29-03-2018 Y880_RS25200 c0ce0a9eee4b1ad24aef46da5268b0cf 526 PIRSF PIRSF002741 16 525 1.6E-101 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y880_RS25200 c0ce0a9eee4b1ad24aef46da5268b0cf 526 Gene3D G3DSA:3.90.76.10 31 196 2.4E-32 T 29-03-2018 Y880_RS25200 c0ce0a9eee4b1ad24aef46da5268b0cf 526 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 442 2.9E-87 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain Y880_RS25200 c0ce0a9eee4b1ad24aef46da5268b0cf 526 Gene3D G3DSA:3.10.105.10 293 496 1.1E-53 T 29-03-2018 Y880_RS25200 c0ce0a9eee4b1ad24aef46da5268b0cf 526 SUPERFAMILY SSF53850 24 523 5.43E-136 T 29-03-2018 Y880_RS14320 ff71037651f966dd9b00157dd3e9782d 159 Gene3D G3DSA:2.60.40.1180 70 158 3.2E-7 T 29-03-2018 Y880_RS14320 ff71037651f966dd9b00157dd3e9782d 159 SUPERFAMILY SSF81901 41 158 2.44E-13 T 29-03-2018 Y880_RS14320 ff71037651f966dd9b00157dd3e9782d 159 SMART SM00671 123 159 0.0041 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS14320 ff71037651f966dd9b00157dd3e9782d 159 SMART SM00671 86 122 9.0 T 29-03-2018 IPR006597 Sel1-like repeat Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 SUPERFAMILY SSF52540 3 166 4.21E-31 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 Gene3D G3DSA:3.40.50.300 2 171 7.5E-32 T 29-03-2018 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 Hamap MF_00109 Shikimate kinase [aroK]. 1 167 29.419 T 29-03-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 28 41 3.2E-24 T 29-03-2018 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 95 112 3.2E-24 T 29-03-2018 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 56 64 3.2E-24 T 29-03-2018 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 4 19 3.2E-24 T 29-03-2018 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 74 83 3.2E-24 T 29-03-2018 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 ProSitePatterns PS01128 Shikimate kinase signature. 57 82 - T 29-03-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Y880_RS23750 136bbde33741f015c5ac556f2224b4f1 172 Pfam PF01202 Shikimate kinase 10 166 1.8E-55 T 29-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Y880_RS00250 0c1b8cce887f6b0e7b91767244d3f57e 300 Pfam PF00561 alpha/beta hydrolase fold 29 253 2.1E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS00250 0c1b8cce887f6b0e7b91767244d3f57e 300 Gene3D G3DSA:3.40.50.1820 3 274 1.2E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS00250 0c1b8cce887f6b0e7b91767244d3f57e 300 SUPERFAMILY SSF53474 12 272 9.4E-38 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 SUPERFAMILY SSF51735 236 289 6.32E-60 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 SUPERFAMILY SSF51735 8 204 6.32E-60 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 Gene3D G3DSA:3.40.50.720 11 277 3.2E-58 T 29-03-2018 Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 Pfam PF00106 short chain dehydrogenase 14 204 4.0E-44 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.1E-16 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.1E-16 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 2.1E-16 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.1E-16 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS14725 fba17875b4752db9b9d47f2544f46b1a 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 2.1E-16 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26455 c9faaded5439b67aaa9d4d5f68986cd6 315 Gene3D G3DSA:2.60.120.330 31 312 1.0E-18 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS26455 c9faaded5439b67aaa9d4d5f68986cd6 315 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 191 275 3.0E-5 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS26455 c9faaded5439b67aaa9d4d5f68986cd6 315 SUPERFAMILY SSF51197 110 286 8.24E-19 T 29-03-2018 Y880_RS12400 ad0ed592e0c5bb4a4d6f57d389803f7d 600 Gene3D G3DSA:3.30.9.10 68 428 0.0024 T 29-03-2018 Y880_RS12400 ad0ed592e0c5bb4a4d6f57d389803f7d 600 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 7 348 2.3E-127 T 29-03-2018 IPR010839 Acyclic terpene utilisation Y880_RS20505 c65f140f52b715645bbac0542a294898 209 SUPERFAMILY SSF53474 7 203 3.6E-38 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS20505 c65f140f52b715645bbac0542a294898 209 Gene3D G3DSA:3.40.50.1820 3 207 4.7E-25 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS20505 c65f140f52b715645bbac0542a294898 209 Pfam PF00975 Thioesterase domain 88 139 7.9E-9 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y880_RS11440 970aa58ae5faf87fc5b66d25871c20a0 35 Gene3D G3DSA:3.40.50.360 1 35 1.0E-10 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS11440 970aa58ae5faf87fc5b66d25871c20a0 35 SUPERFAMILY SSF52218 1 34 1.36E-10 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS11440 970aa58ae5faf87fc5b66d25871c20a0 35 Pfam PF03358 NADPH-dependent FMN reductase 3 31 1.1E-5 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y880_RS12790 8f8a4d1fd04e7227af180edbfabf906b 118 Gene3D G3DSA:2.40.10.220 32 113 2.0E-9 T 29-03-2018 Y880_RS12790 8f8a4d1fd04e7227af180edbfabf906b 118 Pfam PF07238 PilZ domain 17 106 2.4E-13 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS03890 ba7b959bec9953972e14c12f7fb1093b 344 SUPERFAMILY SSF53448 1 220 2.91E-51 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS03890 ba7b959bec9953972e14c12f7fb1093b 344 Gene3D G3DSA:3.90.550.10 1 253 7.4E-50 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS03890 ba7b959bec9953972e14c12f7fb1093b 344 Pfam PF00535 Glycosyl transferase family 2 1 104 3.8E-29 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y880_RS12515 5363e5c6265279cc46b14d85c36e92ef 366 SUPERFAMILY SSF111342 6 288 3.92E-83 T 29-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Y880_RS12515 5363e5c6265279cc46b14d85c36e92ef 366 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 19 322 1.7E-57 T 29-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Y880_RS12515 5363e5c6265279cc46b14d85c36e92ef 366 PIRSF PIRSF026782 9 366 5.4E-123 T 29-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Y880_RS12515 5363e5c6265279cc46b14d85c36e92ef 366 Pfam PF01888 CbiD 12 271 3.3E-89 T 29-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Y880_RS12515 5363e5c6265279cc46b14d85c36e92ef 366 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 12 361 27.631 T 29-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Y880_RS12515 5363e5c6265279cc46b14d85c36e92ef 366 Gene3D G3DSA:3.30.2110.10 14 186 1.9E-60 T 29-03-2018 Y880_RS07895 835170e8b1958332c8215c8d8747b6da 178 Gene3D G3DSA:3.40.50.2300 49 173 5.2E-9 T 29-03-2018 Y880_RS07895 835170e8b1958332c8215c8d8747b6da 178 Pfam PF00072 Response regulator receiver domain 58 165 8.8E-5 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS07895 835170e8b1958332c8215c8d8747b6da 178 SUPERFAMILY SSF52172 56 170 2.56E-12 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS07315 39d3e4dcd5d139e476a4314f1431acec 84 Pfam PF06568 Domain of unknown function (DUF1127) 30 66 2.8E-7 T 29-03-2018 IPR009506 Protein of unknown function DUF1127 Y880_RS03360 e8fc75ab60686963a5ff8da3dffa960b 353 SUPERFAMILY SSF63829 300 350 5.67E-58 T 29-03-2018 Y880_RS03360 e8fc75ab60686963a5ff8da3dffa960b 353 SUPERFAMILY SSF63829 41 267 5.67E-58 T 29-03-2018 Y880_RS03360 e8fc75ab60686963a5ff8da3dffa960b 353 Gene3D G3DSA:2.120.10.30 46 352 1.1E-45 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS03360 e8fc75ab60686963a5ff8da3dffa960b 353 Pfam PF03088 Strictosidine synthase 147 234 2.2E-30 T 29-03-2018 IPR018119 Strictosidine synthase, conserved region GO:0009058|GO:0016844 Y880_RS19575 c5c86202de5c0ef2ca46c2a2421e4f3d 211 Pfam PF00297 Ribosomal protein L3 44 182 3.3E-16 T 29-03-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y880_RS19575 c5c86202de5c0ef2ca46c2a2421e4f3d 211 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 207 40.239 T 29-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19575 c5c86202de5c0ef2ca46c2a2421e4f3d 211 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 204 1.6E-92 T 29-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y880_RS19575 c5c86202de5c0ef2ca46c2a2421e4f3d 211 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 29-03-2018 IPR019926 Ribosomal protein L3, conserved site Y880_RS19575 c5c86202de5c0ef2ca46c2a2421e4f3d 211 Gene3D G3DSA:4.10.960.10 56 165 3.1E-33 T 29-03-2018 Y880_RS19575 c5c86202de5c0ef2ca46c2a2421e4f3d 211 SUPERFAMILY SSF50447 1 208 1.24E-81 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain Y880_RS09295 c720636c56f03d1e7f2485f99ec3249b 331 Pfam PF04773 FecR protein 125 211 1.3E-20 T 29-03-2018 IPR006860 FecR protein Y880_RS09295 c720636c56f03d1e7f2485f99ec3249b 331 PIRSF PIRSF018266 4 327 5.0E-90 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS09295 c720636c56f03d1e7f2485f99ec3249b 331 Pfam PF16220 Domain of unknown function (DUF4880) 15 55 6.1E-14 T 29-03-2018 IPR032623 FecR, N-terminal Y880_RS09295 c720636c56f03d1e7f2485f99ec3249b 331 Gene3D G3DSA:2.60.120.10 116 198 0.053 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS26660 204764c1f88a1b05a914626ba72f1aa9 105 SMART SM00028 51 84 23.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS26660 204764c1f88a1b05a914626ba72f1aa9 105 SMART SM00028 17 50 0.25 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y880_RS26660 204764c1f88a1b05a914626ba72f1aa9 105 Pfam PF13428 Tetratricopeptide repeat 22 59 9.4E-6 T 29-03-2018 Y880_RS26660 204764c1f88a1b05a914626ba72f1aa9 105 Gene3D G3DSA:1.25.40.10 1 105 9.1E-20 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS26660 204764c1f88a1b05a914626ba72f1aa9 105 SUPERFAMILY SSF48452 5 83 5.06E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS15945 382e2586a745caa8c06a8491be6a5aed 100 Pfam PF01337 Barstar (barnase inhibitor) 13 90 5.0E-17 T 29-03-2018 IPR000468 Barstar (barnase inhibitor) Y880_RS15945 382e2586a745caa8c06a8491be6a5aed 100 Gene3D G3DSA:3.30.370.10 9 97 1.0E-20 T 29-03-2018 IPR000468 Barstar (barnase inhibitor) Y880_RS15945 382e2586a745caa8c06a8491be6a5aed 100 SUPERFAMILY SSF52038 11 94 4.05E-24 T 29-03-2018 IPR000468 Barstar (barnase inhibitor) Y880_RS18555 e6a9d76e133f3afbb15e52390881e7d4 196 Pfam PF10986 Protein of unknown function (DUF2796) 31 191 2.0E-55 T 29-03-2018 IPR021253 Protein of unknown function DUF2796 Y880_RS11685 4903c2cf94326dafeb369df850946a6e 70 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 12 62 3.5E-25 T 29-03-2018 IPR010260 DNA-binding transcriptional activator AlpA Y880_RS22675 571e0428d021f2c6731edbb05e75cb0f 205 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 5 204 1.7E-63 T 29-03-2018 IPR005744 Hly-III GO:0016021|GO:0019835 Y880_RS22675 571e0428d021f2c6731edbb05e75cb0f 205 Pfam PF03006 Haemolysin-III related 2 197 5.1E-45 T 29-03-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 Y880_RS18600 b142a631d2da65fa326554c835a7153d 192 Pfam PF11354 Protein of unknown function (DUF3156) 31 189 3.5E-55 T 29-03-2018 IPR021500 Protein of unknown function DUF3156 Y880_RS17485 f7b95fb59c60e6c9d6ff804046208860 104 Gene3D G3DSA:3.40.1440.10 2 89 3.7E-5 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily Y880_RS17485 f7b95fb59c60e6c9d6ff804046208860 104 SUPERFAMILY SSF82771 15 83 1.44E-9 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily Y880_RS17485 f7b95fb59c60e6c9d6ff804046208860 104 Pfam PF01541 GIY-YIG catalytic domain 14 84 1.3E-11 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily Y880_RS24625 788a15d619e4b7479ee62fb10d395428 233 Pfam PF01914 MarC family integral membrane protein 6 214 2.4E-49 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y880_RS24625 788a15d619e4b7479ee62fb10d395428 233 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 4 214 3.9E-33 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y880_RS06540 be76209d4faa7d80ae7e6a79299867bc 192 SUPERFAMILY SSF109604 7 179 3.93E-38 T 29-03-2018 Y880_RS06540 be76209d4faa7d80ae7e6a79299867bc 192 Gene3D G3DSA:1.10.3210.10 2 183 5.3E-40 T 29-03-2018 Y880_RS06540 be76209d4faa7d80ae7e6a79299867bc 192 Pfam PF13023 HD domain 16 171 9.8E-41 T 29-03-2018 IPR006674 HD domain Y880_RS22445 433e9e2ec9b60c382c4ac4eb1b776425 285 PRINTS PR01483 Fatty acid synthase signature 181 203 6.8E-5 T 29-03-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y880_RS22445 433e9e2ec9b60c382c4ac4eb1b776425 285 PRINTS PR01483 Fatty acid synthase signature 203 224 6.8E-5 T 29-03-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y880_RS22445 433e9e2ec9b60c382c4ac4eb1b776425 285 Pfam PF01575 MaoC like domain 180 254 1.8E-12 T 29-03-2018 IPR002539 MaoC-like domain Y880_RS22445 433e9e2ec9b60c382c4ac4eb1b776425 285 SUPERFAMILY SSF54637 44 153 3.23E-6 T 29-03-2018 IPR029069 HotDog domain Y880_RS22445 433e9e2ec9b60c382c4ac4eb1b776425 285 SUPERFAMILY SSF54637 174 260 2.01E-18 T 29-03-2018 IPR029069 HotDog domain Y880_RS22445 433e9e2ec9b60c382c4ac4eb1b776425 285 Gene3D G3DSA:3.10.129.10 167 272 8.9E-18 T 29-03-2018 Y880_RS22445 433e9e2ec9b60c382c4ac4eb1b776425 285 Gene3D G3DSA:3.10.129.10 39 166 7.3E-22 T 29-03-2018 Y880_RS03895 5f651ae5a7ee171108aef0b8675d620d 591 SUPERFAMILY SSF53756 149 515 1.47E-63 T 29-03-2018 Y880_RS03895 5f651ae5a7ee171108aef0b8675d620d 591 Gene3D G3DSA:3.40.50.2000 289 500 1.1E-44 T 29-03-2018 Y880_RS03895 5f651ae5a7ee171108aef0b8675d620d 591 Pfam PF00534 Glycosyl transferases group 1 324 493 2.9E-28 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS10300 f41f2ee424cd4de48aba6229f1ebca2a 177 Pfam PF04352 ProQ/FINO family 40 146 5.8E-32 T 29-03-2018 IPR016103 ProQ/FinO domain Y880_RS10300 f41f2ee424cd4de48aba6229f1ebca2a 177 SMART SM00945 36 150 1.2E-43 T 29-03-2018 IPR016103 ProQ/FinO domain Y880_RS10300 f41f2ee424cd4de48aba6229f1ebca2a 177 Gene3D G3DSA:1.10.1710.10 4 153 5.0E-37 T 29-03-2018 IPR016103 ProQ/FinO domain Y880_RS10300 f41f2ee424cd4de48aba6229f1ebca2a 177 SUPERFAMILY SSF48657 5 148 3.66E-37 T 29-03-2018 IPR016103 ProQ/FinO domain Y880_RS01025 0fdb84b1df69a48fb4f036188e9e41fc 339 Pfam PF10974 Protein of unknown function (DUF2804) 24 338 3.8E-76 T 29-03-2018 IPR021243 Protein of unknown function DUF2804 Y880_RS10555 2cc39635d965a1b598a7e881db64ed71 296 Pfam PF00892 EamA-like transporter family 17 147 8.5E-20 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS10555 2cc39635d965a1b598a7e881db64ed71 296 Pfam PF00892 EamA-like transporter family 158 283 1.9E-10 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS10555 2cc39635d965a1b598a7e881db64ed71 296 SUPERFAMILY SSF103481 50 151 3.14E-17 T 29-03-2018 Y880_RS10555 2cc39635d965a1b598a7e881db64ed71 296 SUPERFAMILY SSF103481 190 290 6.41E-13 T 29-03-2018 Y880_RS12480 bdeb4fd6f7f738d995ccdcff6853e4c1 282 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 248 5.0E-17 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS12480 bdeb4fd6f7f738d995ccdcff6853e4c1 282 Gene3D G3DSA:3.40.190.10 31 130 2.1E-12 T 29-03-2018 Y880_RS12480 bdeb4fd6f7f738d995ccdcff6853e4c1 282 SUPERFAMILY SSF53850 34 252 1.18E-30 T 29-03-2018 Y880_RS12480 bdeb4fd6f7f738d995ccdcff6853e4c1 282 SMART SM00062 31 262 0.0084 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS12480 bdeb4fd6f7f738d995ccdcff6853e4c1 282 Gene3D G3DSA:3.40.190.10 131 219 0.22 T 29-03-2018 Y880_RS05905 7f1edfffccb5f5a9e7f9ed21f6d678b5 532 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 14 532 5.2E-151 T 29-03-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y880_RS05905 7f1edfffccb5f5a9e7f9ed21f6d678b5 532 SUPERFAMILY SSF56935 130 532 3.14E-60 T 29-03-2018 Y880_RS05905 7f1edfffccb5f5a9e7f9ed21f6d678b5 532 SUPERFAMILY SSF56935 35 100 3.14E-60 T 29-03-2018 Y880_RS05905 7f1edfffccb5f5a9e7f9ed21f6d678b5 532 Gene3D G3DSA:2.40.160.60 28 532 2.8E-64 T 29-03-2018 Y880_RS21630 b6cbae7a243862d646a20740e18db3af 790 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 282 292 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site Y880_RS21630 b6cbae7a243862d646a20740e18db3af 790 Pfam PF00577 Outer membrane usher protein 266 691 1.9E-22 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 Y880_RS21630 b6cbae7a243862d646a20740e18db3af 790 Pfam PF13953 PapC C-terminal domain 707 768 2.0E-15 T 29-03-2018 IPR025949 PapC-like, C-terminal domain Y880_RS06590 0abadd588ab3792c0468223ecdd6a6bc 469 Gene3D G3DSA:3.40.50.1820 43 454 3.3E-10 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS06590 0abadd588ab3792c0468223ecdd6a6bc 469 SUPERFAMILY SSF53474 75 192 9.67E-8 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS09840 5641a30678fb3f6fa362a41264bd8427 408 Gene3D G3DSA:1.20.1250.20 19 208 1.4E-14 T 29-03-2018 Y880_RS09840 5641a30678fb3f6fa362a41264bd8427 408 Gene3D G3DSA:1.20.1250.20 209 287 2.5E-9 T 29-03-2018 Y880_RS09840 5641a30678fb3f6fa362a41264bd8427 408 SUPERFAMILY SSF103473 21 269 4.97E-27 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS09840 5641a30678fb3f6fa362a41264bd8427 408 Pfam PF07690 Major Facilitator Superfamily 40 286 5.4E-18 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS26645 d27c726848d1e6ded3db86db924a7fc7 88 SUPERFAMILY SSF141371 1 86 6.67E-9 T 29-03-2018 Y880_RS26645 d27c726848d1e6ded3db86db924a7fc7 88 Gene3D G3DSA:2.40.10.220 1 87 7.9E-14 T 29-03-2018 Y880_RS26645 d27c726848d1e6ded3db86db924a7fc7 88 Pfam PF07238 PilZ domain 4 85 1.6E-9 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 PRINTS PR00103 cAMP-dependent protein kinase signature 194 203 1.8E-6 T 29-03-2018 Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 PRINTS PR00103 cAMP-dependent protein kinase signature 169 183 1.8E-6 T 29-03-2018 Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 PRINTS PR00103 cAMP-dependent protein kinase signature 154 168 1.8E-6 T 29-03-2018 Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 PRINTS PR00103 cAMP-dependent protein kinase signature 206 217 1.8E-6 T 29-03-2018 Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 160 176 - T 29-03-2018 IPR018488 Cyclic nucleotide-binding, conserved site Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 SUPERFAMILY SSF51206 151 259 3.4E-28 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 SMART SM00100 128 246 6.7E-19 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 Gene3D G3DSA:2.60.120.10 13 139 0.027 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 Gene3D G3DSA:2.60.120.10 140 261 1.2E-27 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS21995 cfb06cb95b5e0f1579cdbdb1aab29ac2 265 Pfam PF00027 Cyclic nucleotide-binding domain 152 234 1.1E-21 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain Y880_RS20865 627a2bd530563282384aecb142beed3d 251 Pfam PF03746 LamB/YcsF family 8 249 3.8E-93 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF Y880_RS20865 627a2bd530563282384aecb142beed3d 251 Gene3D G3DSA:3.20.20.370 7 251 7.3E-96 T 29-03-2018 Y880_RS20865 627a2bd530563282384aecb142beed3d 251 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 6 251 42.569 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF Y880_RS20865 627a2bd530563282384aecb142beed3d 251 SUPERFAMILY SSF88713 7 249 6.37E-90 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS10600 0cf446077069ed028b256cdef30a6e9f 184 Pfam PF14539 Domain of unknown function (DUF4442) 39 172 6.9E-33 T 29-03-2018 IPR027961 Protein of unknown function DUF4442 Y880_RS10600 0cf446077069ed028b256cdef30a6e9f 184 Gene3D G3DSA:3.10.129.10 23 172 2.1E-17 T 29-03-2018 Y880_RS10600 0cf446077069ed028b256cdef30a6e9f 184 SUPERFAMILY SSF54637 39 176 4.83E-19 T 29-03-2018 IPR029069 HotDog domain Y880_RS17145 6c29b9351a98d377df4adf0f38613e52 131 Pfam PF14248 Domain of unknown function (DUF4345) 7 121 7.1E-16 T 29-03-2018 IPR025597 Protein of unknown function DUF4345 Y880_RS04995 f8258efbed6c488d0a4e95a5313d0f9c 254 Pfam PF04654 Protein of unknown function, DUF599 18 228 9.7E-62 T 29-03-2018 IPR006747 Protein of unknown function DUF599 Y880_RS16390 04fa9fa48b6fd250740916f17a2eca1f 168 Gene3D G3DSA:3.30.910.20 11 165 6.0E-17 T 29-03-2018 Y880_RS16390 04fa9fa48b6fd250740916f17a2eca1f 168 Pfam PF03938 Outer membrane protein (OmpH-like) 9 164 7.7E-25 T 29-03-2018 IPR005632 Chaperone protein Skp GO:0051082 Y880_RS16390 04fa9fa48b6fd250740916f17a2eca1f 168 SUPERFAMILY SSF111384 22 165 9.55E-29 T 29-03-2018 IPR024930 Skp domain Y880_RS16390 04fa9fa48b6fd250740916f17a2eca1f 168 SMART SM00935 11 165 1.2E-37 T 29-03-2018 IPR005632 Chaperone protein Skp GO:0051082 Y880_RS03515 2ed90014999ce20ee8b6aa3b61d05dbd 110 Gene3D G3DSA:1.20.120.20 2 91 2.4E-4 T 29-03-2018 Y880_RS03515 2ed90014999ce20ee8b6aa3b61d05dbd 110 Pfam PF05957 Bacterial protein of unknown function (DUF883) 19 109 1.2E-24 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB Y880_RS07635 55f86e3aa85446924ad177fc7d5b8c01 426 Gene3D G3DSA:1.20.1250.20 225 414 4.7E-18 T 29-03-2018 Y880_RS07635 55f86e3aa85446924ad177fc7d5b8c01 426 Pfam PF07690 Major Facilitator Superfamily 42 374 3.6E-38 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS07635 55f86e3aa85446924ad177fc7d5b8c01 426 Gene3D G3DSA:1.20.1250.20 25 216 3.3E-24 T 29-03-2018 Y880_RS07635 55f86e3aa85446924ad177fc7d5b8c01 426 SUPERFAMILY SSF103473 32 414 1.57E-51 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS06175 951179b12eed382f1c4cf7dd92da0064 360 Gene3D G3DSA:1.10.3720.10 3 344 7.7E-35 T 29-03-2018 Y880_RS06175 951179b12eed382f1c4cf7dd92da0064 360 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 147 354 2.4E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS06175 951179b12eed382f1c4cf7dd92da0064 360 SUPERFAMILY SSF161098 123 339 6.28E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS18935 9d1996d344e1c53c660bec55b3c348fd 418 Gene3D G3DSA:2.40.160.10 14 418 3.4E-119 T 29-03-2018 Y880_RS18935 9d1996d344e1c53c660bec55b3c348fd 418 Pfam PF03573 outer membrane porin, OprD family 28 416 1.2E-149 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS06005 09e92fd4c7689b17c7c082efc1518088 403 Gene3D G3DSA:1.20.1250.20 2 202 1.8E-23 T 29-03-2018 Y880_RS06005 09e92fd4c7689b17c7c082efc1518088 403 Pfam PF07690 Major Facilitator Superfamily 23 348 2.6E-38 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS06005 09e92fd4c7689b17c7c082efc1518088 403 SUPERFAMILY SSF103473 6 390 7.85E-56 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS06005 09e92fd4c7689b17c7c082efc1518088 403 Gene3D G3DSA:1.20.1250.20 203 393 2.2E-24 T 29-03-2018 Y880_RS06005 09e92fd4c7689b17c7c082efc1518088 403 TIGRFAM TIGR00886 2A0108: nitrite transporter 13 347 1.3E-100 T 29-03-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 Y880_RS01380 e5860829c111e65cbf3fcb441be8987f 182 SUPERFAMILY SSF81342 4 179 7.45E-38 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y880_RS01380 e5860829c111e65cbf3fcb441be8987f 182 Gene3D G3DSA:1.20.950.20 1 182 1.8E-31 T 29-03-2018 Y880_RS01380 e5860829c111e65cbf3fcb441be8987f 182 Pfam PF01292 Prokaryotic cytochrome b561 9 179 2.1E-25 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y880_RS22460 bf11f888dbb4131fa6dd085ca86aed0e 206 Pfam PF13590 Domain of unknown function (DUF4136) 56 205 9.7E-19 T 29-03-2018 IPR025411 Domain of unknown function DUF4136 Y880_RS06760 b438f64cced42588e9028c286fa040fe 48 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 10 44 2.7E-9 T 29-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 Y880_RS16175 3734ca7beae56c853312fc942f2dc0af 308 SUPERFAMILY SSF103481 52 155 6.15E-9 T 29-03-2018 Y880_RS16175 3734ca7beae56c853312fc942f2dc0af 308 Pfam PF00892 EamA-like transporter family 19 152 7.2E-18 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS16175 3734ca7beae56c853312fc942f2dc0af 308 Pfam PF00892 EamA-like transporter family 161 293 1.7E-17 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS16175 3734ca7beae56c853312fc942f2dc0af 308 SUPERFAMILY SSF103481 202 299 8.24E-12 T 29-03-2018 Y880_RS03970 a3734e4cbdfc06ed570c6faf3c8ac87a 135 SUPERFAMILY SSF54427 5 133 5.86E-33 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS03970 a3734e4cbdfc06ed570c6faf3c8ac87a 135 Gene3D G3DSA:3.10.450.50 1 131 6.9E-25 T 29-03-2018 Y880_RS03970 a3734e4cbdfc06ed570c6faf3c8ac87a 135 Pfam PF07366 SnoaL-like polyketide cyclase 9 128 7.6E-39 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS04145 a3b34ec9df7c381771afd8d534c7b29b 340 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 5 325 6.9E-73 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS04145 a3b34ec9df7c381771afd8d534c7b29b 340 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 25 246 9.9E-19 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS04145 a3b34ec9df7c381771afd8d534c7b29b 340 Gene3D G3DSA:2.40.50.100 130 290 5.1E-7 T 29-03-2018 Y880_RS04145 a3b34ec9df7c381771afd8d534c7b29b 340 Gene3D G3DSA:1.10.287.470 82 129 5.3E-10 T 29-03-2018 Y880_RS04145 a3b34ec9df7c381771afd8d534c7b29b 340 Gene3D G3DSA:2.40.50.100 26 81 1.1E-14 T 29-03-2018 Y880_RS04145 a3b34ec9df7c381771afd8d534c7b29b 340 SUPERFAMILY SSF111369 17 253 1.1E-52 T 29-03-2018 Y880_RS08710 52e1e58e10007e15d79ae86fb6384f55 125 Pfam PF03992 Antibiotic biosynthesis monooxygenase 48 95 1.1E-5 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS08710 52e1e58e10007e15d79ae86fb6384f55 125 Gene3D G3DSA:3.30.70.100 16 120 1.4E-12 T 29-03-2018 Y880_RS08710 52e1e58e10007e15d79ae86fb6384f55 125 SUPERFAMILY SSF54909 15 121 1.41E-14 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS12910 dbd1ae8ba85b261002113ed3b38f7e1e 211 Pfam PF01618 MotA/TolQ/ExbB proton channel family 66 187 7.4E-35 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Y880_RS02525 27f525e9d5d45825935809891bdfdb34 135 Gene3D G3DSA:3.10.180.10 1 135 1.2E-29 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS02525 27f525e9d5d45825935809891bdfdb34 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 110 2.4E-13 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS02525 27f525e9d5d45825935809891bdfdb34 135 SUPERFAMILY SSF54593 1 127 1.61E-32 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS16925 3d5e9d4ff5ce9885d86523dd91e405ba 64 Pfam PF06945 Protein of unknown function (DUF1289) 8 53 8.0E-19 T 29-03-2018 IPR010710 Protein of unknown function DUF1289 Y880_RS16785 545e090550092c4058ab203b36f7088f 179 Gene3D G3DSA:3.10.640.10 1 172 2.3E-64 T 29-03-2018 Y880_RS16785 545e090550092c4058ab203b36f7088f 179 SUPERFAMILY SSF52980 2 177 8.85E-62 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y880_RS16785 545e090550092c4058ab203b36f7088f 179 Pfam PF07152 YaeQ protein 1 171 1.4E-61 T 29-03-2018 IPR009822 YaeQ Y880_RS16785 545e090550092c4058ab203b36f7088f 179 SMART SM01322 1 174 8.5E-93 T 29-03-2018 IPR009822 YaeQ Y880_RS16785 545e090550092c4058ab203b36f7088f 179 PIRSF PIRSF011484 1 178 9.5E-52 T 29-03-2018 IPR009822 YaeQ Y880_RS11635 8b750a2916d250a9303af3835c2c1064 197 Gene3D G3DSA:1.10.1740.10 9 102 1.6E-4 T 29-03-2018 Y880_RS11635 8b750a2916d250a9303af3835c2c1064 197 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 178 4.9E-16 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS11635 8b750a2916d250a9303af3835c2c1064 197 SUPERFAMILY SSF88659 104 178 1.05E-11 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS11635 8b750a2916d250a9303af3835c2c1064 197 Pfam PF08281 Sigma-70, region 4 126 178 6.4E-13 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS11635 8b750a2916d250a9303af3835c2c1064 197 SUPERFAMILY SSF88946 13 100 9.02E-5 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y880_RS11635 8b750a2916d250a9303af3835c2c1064 197 Gene3D G3DSA:1.10.10.10 107 183 4.5E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS03045 80fee1c7d65b1f544dff74311c1c6780 149 Gene3D G3DSA:2.40.50.100 1 137 5.7E-6 T 29-03-2018 Y880_RS03045 80fee1c7d65b1f544dff74311c1c6780 149 Pfam PF13437 HlyD family secretion protein 1 79 3.2E-9 T 29-03-2018 Y880_RS28980 cb787a167dc840e02f0dee4f891d3a84 192 Pfam PF11075 Protein of unknown function VcgC/VcgE (DUF2780) 13 178 1.8E-43 T 29-03-2018 IPR021302 Protein of unknown function DUF2780, VcgC/VcgE Y880_RS26880 6eb4a63b6d6c88a8465ded4dff1084f0 182 Hamap MF_00299 Probable RNA 2'-phosphotransferase [kptA]. 5 179 34.852 T 29-03-2018 IPR022928 RNA 2'-phosphotransferase KptA, putative GO:0016773 Y880_RS26880 6eb4a63b6d6c88a8465ded4dff1084f0 182 Pfam PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family 8 172 4.3E-36 T 29-03-2018 IPR002745 Phosphotransferase KptA/Tpt1 GO:0006388|GO:0016772 Y880_RS26880 6eb4a63b6d6c88a8465ded4dff1084f0 182 SUPERFAMILY SSF56399 9 179 1.35E-55 T 29-03-2018 Y880_RS00430 83e31d4118eb4d4360df8fb5e4d0b54e 194 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 122 175 1.3E-11 T 29-03-2018 IPR005573 Anti sigma-E protein RseA, C-terminal Y880_RS00430 83e31d4118eb4d4360df8fb5e4d0b54e 194 SUPERFAMILY SSF89069 6 72 7.32E-14 T 29-03-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 Y880_RS00430 83e31d4118eb4d4360df8fb5e4d0b54e 194 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 7 75 3.0E-16 T 29-03-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 Y880_RS24545 a50c232e8bccd093ec51ab732813c335 200 Gene3D G3DSA:3.40.109.10 2 200 8.1E-42 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS24545 a50c232e8bccd093ec51ab732813c335 200 Pfam PF00881 Nitroreductase family 7 177 2.1E-33 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y880_RS24545 a50c232e8bccd093ec51ab732813c335 200 SUPERFAMILY SSF55469 1 195 3.27E-49 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y880_RS01890 529a248387faa3b89f29fbe58361ff0b 370 SUPERFAMILY SSF56645 29 213 1.47E-14 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Y880_RS01890 529a248387faa3b89f29fbe58361ff0b 370 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 219 357 7.1E-28 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS01890 529a248387faa3b89f29fbe58361ff0b 370 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 32 106 2.4E-7 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS01890 529a248387faa3b89f29fbe58361ff0b 370 SUPERFAMILY SSF47203 221 365 3.06E-35 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y880_RS01890 529a248387faa3b89f29fbe58361ff0b 370 Gene3D G3DSA:1.20.140.10 218 350 9.1E-33 T 29-03-2018 Y880_RS01890 529a248387faa3b89f29fbe58361ff0b 370 Gene3D G3DSA:1.10.540.10 12 180 6.4E-11 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y880_RS18430 71616612c41b1236bb81599ed795b5e3 244 Pfam PF12698 ABC-2 family transporter protein 53 214 6.0E-10 T 29-03-2018 Y880_RS27605 947f5aad2cd3bd2b2cabd967fb434c82 478 PIRSF PIRSF000204 1 478 1.3E-217 T 29-03-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 Y880_RS27605 947f5aad2cd3bd2b2cabd967fb434c82 478 Gene3D G3DSA:3.40.50.1220 304 478 5.2E-83 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS27605 947f5aad2cd3bd2b2cabd967fb434c82 478 SUPERFAMILY SSF52467 306 478 6.27E-75 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS27605 947f5aad2cd3bd2b2cabd967fb434c82 478 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 475 3.6E-191 T 29-03-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Y880_RS20020 a7cc37be7f93237412a8955aec2af700 384 SUPERFAMILY SSF56601 23 373 9.46E-78 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like Y880_RS20020 a7cc37be7f93237412a8955aec2af700 384 Gene3D G3DSA:3.40.710.10 45 383 4.8E-52 T 29-03-2018 Y880_RS20020 a7cc37be7f93237412a8955aec2af700 384 Pfam PF00144 Beta-lactamase 71 363 5.8E-45 T 29-03-2018 IPR001466 Beta-lactamase-related Y880_RS03425 97f76fcc2c258aa44dd4dc015a77a9dc 153 PRINTS PR00332 Histidine triad family signature 30 48 6.4E-9 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS03425 97f76fcc2c258aa44dd4dc015a77a9dc 153 PRINTS PR00332 Histidine triad family signature 98 108 6.4E-9 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS03425 97f76fcc2c258aa44dd4dc015a77a9dc 153 PRINTS PR00332 Histidine triad family signature 9 25 6.4E-9 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS03425 97f76fcc2c258aa44dd4dc015a77a9dc 153 Pfam PF01230 HIT domain 18 112 9.8E-22 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS03425 97f76fcc2c258aa44dd4dc015a77a9dc 153 Gene3D G3DSA:3.30.428.10 3 153 7.6E-36 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS03425 97f76fcc2c258aa44dd4dc015a77a9dc 153 SUPERFAMILY SSF54197 6 147 2.32E-36 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS03425 97f76fcc2c258aa44dd4dc015a77a9dc 153 ProSitePatterns PS00892 HIT domain signature. 91 109 - T 29-03-2018 IPR019808 Histidine triad, conserved site Y880_RS25075 1d52b8cac93dd02d2d10a900475cd6b9 349 SUPERFAMILY SSF56784 27 221 8.91E-12 T 29-03-2018 IPR023214 HAD-like domain Y880_RS25075 1d52b8cac93dd02d2d10a900475cd6b9 349 Gene3D G3DSA:3.40.50.1000 41 332 5.6E-6 T 29-03-2018 IPR023214 HAD-like domain Y880_RS06350 eefeb15a5501fea8de29a3b5f1a82bcc 120 Pfam PF04320 Protein with unknown function (DUF469) 15 116 3.6E-32 T 29-03-2018 IPR007416 Protein of unknown function DUF469 Y880_RS21395 4f143cf42d4913f9e37529ab2b42505a 144 Pfam PF05425 Copper resistance protein D 44 134 6.9E-11 T 29-03-2018 IPR008457 Copper resistance protein D GO:0016021 Y880_RS20325 27d5ef9f6b58c3037694b0518cdf7ac6 153 Pfam PF05258 Protein of unknown function (DUF721) 15 96 1.5E-9 T 29-03-2018 IPR007922 Protein of unknown function DUF721/UPF0232 Y880_RS13400 e1353fc75c596d7810bad52d6aa65985 793 Gene3D G3DSA:1.20.1640.10 573 790 2.5E-33 T 29-03-2018 Y880_RS13400 e1353fc75c596d7810bad52d6aa65985 793 Gene3D G3DSA:1.20.1640.10 194 408 1.1E-26 T 29-03-2018 Y880_RS13400 e1353fc75c596d7810bad52d6aa65985 793 Pfam PF02460 Patched family 178 308 9.9E-5 T 29-03-2018 IPR003392 Protein patched/dispatched GO:0016021 Y880_RS13400 e1353fc75c596d7810bad52d6aa65985 793 Pfam PF03176 MMPL family 479 777 2.1E-27 T 29-03-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y880_RS13400 e1353fc75c596d7810bad52d6aa65985 793 SUPERFAMILY SSF82866 207 395 2.88E-25 T 29-03-2018 Y880_RS13400 e1353fc75c596d7810bad52d6aa65985 793 SUPERFAMILY SSF82866 579 779 4.84E-36 T 29-03-2018 Y880_RS17190 f4385cc47636a4a8d14115dc609750e0 264 Pfam PF00795 Carbon-nitrogen hydrolase 12 249 5.7E-32 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS17190 f4385cc47636a4a8d14115dc609750e0 264 SUPERFAMILY SSF56317 6 258 1.18E-65 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS17190 f4385cc47636a4a8d14115dc609750e0 264 Gene3D G3DSA:3.60.110.10 7 264 4.7E-61 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Y880_RS10920 76ad7610d7578f1cf895fe0450eb0f3a 226 Gene3D G3DSA:3.40.50.850 1 210 5.3E-34 T 29-03-2018 Y880_RS10920 76ad7610d7578f1cf895fe0450eb0f3a 226 Pfam PF00857 Isochorismatase family 14 167 1.8E-27 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS10920 76ad7610d7578f1cf895fe0450eb0f3a 226 SUPERFAMILY SSF52499 4 206 3.14E-45 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Y880_RS25030 398978f47697e329c346e0f9242d9d8d 304 SUPERFAMILY SSF49401 168 304 7.95E-20 T 29-03-2018 IPR008966 Adhesion domain Y880_RS25030 398978f47697e329c346e0f9242d9d8d 304 Pfam PF00419 Fimbrial protein 159 304 3.3E-13 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS25030 398978f47697e329c346e0f9242d9d8d 304 Gene3D G3DSA:2.60.40.1090 155 304 2.8E-23 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y880_RS11675 488ae7ada4275fe691eca6a98c9ce5c6 106 Pfam PF11747 Killing trait 11 77 3.1E-27 T 29-03-2018 IPR021070 Killing trait, RebB Y880_RS10825 cea3e57397bdb3221cb1d1dab2f4890e 250 Pfam PF08241 Methyltransferase domain 42 130 1.2E-16 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS10825 cea3e57397bdb3221cb1d1dab2f4890e 250 SUPERFAMILY SSF53335 1 196 2.56E-32 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS10825 cea3e57397bdb3221cb1d1dab2f4890e 250 Gene3D G3DSA:3.40.50.150 5 216 4.8E-28 T 29-03-2018 Y880_RS19165 15b612d350386114ebe4e76b8e0ecb42 431 Gene3D G3DSA:2.40.160.10 12 431 1.1E-110 T 29-03-2018 Y880_RS19165 15b612d350386114ebe4e76b8e0ecb42 431 Pfam PF03573 outer membrane porin, OprD family 32 429 5.5E-143 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 2.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 2.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 2.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 251 9.8E-60 T 29-03-2018 Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 1.9E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.9E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 1.9E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 1.9E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.9E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.9E-42 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 Gene3D G3DSA:3.40.50.720 44 260 1.8E-61 T 29-03-2018 Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 Gene3D G3DSA:3.40.50.720 3 43 5.3E-6 T 29-03-2018 Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 SUPERFAMILY SSF51735 9 253 3.08E-74 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS26310 5a462220a81381fb4c029488aae1e211 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 201 0.0053 T 29-03-2018 Y880_RS14000 165ee7ff54e8cc78b5ccf5dde78b6ed8 60 Pfam PF06945 Protein of unknown function (DUF1289) 3 47 2.2E-18 T 29-03-2018 IPR010710 Protein of unknown function DUF1289 Y880_RS16365 baa13a0f23ecbed0395fefe145f1a22a 201 Pfam PF01351 Ribonuclease HII 15 191 1.9E-42 T 29-03-2018 IPR024567 Ribonuclease HII/HIII domain Y880_RS16365 baa13a0f23ecbed0395fefe145f1a22a 201 Hamap MF_00052_B Ribonuclease HII [rnhB]. 13 192 39.404 T 29-03-2018 IPR022898 Ribonuclease HII GO:0004523 Y880_RS16365 baa13a0f23ecbed0395fefe145f1a22a 201 SUPERFAMILY SSF53098 13 197 1.27E-71 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS16365 baa13a0f23ecbed0395fefe145f1a22a 201 Gene3D G3DSA:3.30.420.10 7 201 7.8E-72 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 Y880_RS11140 7440dff33f76380cd36e98359334cc38 118 Pfam PF13411 MerR HTH family regulatory protein 19 87 1.0E-22 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS11140 7440dff33f76380cd36e98359334cc38 118 Gene3D G3DSA:1.10.1660.10 14 118 4.9E-28 T 29-03-2018 Y880_RS11140 7440dff33f76380cd36e98359334cc38 118 SUPERFAMILY SSF46955 17 113 1.6E-20 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS11140 7440dff33f76380cd36e98359334cc38 118 SMART SM00422 19 89 5.3E-9 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS21675 493af5a9a733defef804ddba05a91153 173 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 37 171 1.8E-41 T 29-03-2018 IPR018550 Lipid A 3-O-deacylase-related Y880_RS21675 493af5a9a733defef804ddba05a91153 173 PIRSF PIRSF029681 1 173 1.2E-53 T 29-03-2018 IPR018550 Lipid A 3-O-deacylase-related Y880_RS21675 493af5a9a733defef804ddba05a91153 173 Gene3D G3DSA:2.40.160.20 24 173 2.0E-40 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS21675 493af5a9a733defef804ddba05a91153 173 SUPERFAMILY SSF56925 33 148 8.89E-6 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS02080 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 232 256 2.0E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS02080 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 377 403 2.0E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS02080 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 159 183 2.0E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS02080 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 129 148 2.0E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS02080 600cde6d9741e25b87c61e302d50b7bc 499 Pfam PF00361 Proton-conducting membrane transporter 124 417 6.4E-41 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS06620 bf005898b6c3bee0933d7fb24809edfb 230 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 133 219 4.5E-10 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS06620 bf005898b6c3bee0933d7fb24809edfb 230 Gene3D G3DSA:2.60.120.620 52 230 1.0E-19 T 29-03-2018 Y880_RS01030 6a2d8107503f83561f39d3b5ba7b694e 182 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 101 158 4.8E-21 T 29-03-2018 IPR018637 Domain of unknown function DUF2059 Y880_RS01175 bfd8e08b8ac4e693611cce5da2178cdf 450 Gene3D G3DSA:1.10.4100.10 1 309 1.2E-94 T 29-03-2018 Y880_RS01175 bfd8e08b8ac4e693611cce5da2178cdf 450 SUPERFAMILY SSF103378 2 446 4.97E-122 T 29-03-2018 IPR005656 MmgE/PrpD GO:0016829 Y880_RS01175 bfd8e08b8ac4e693611cce5da2178cdf 450 Pfam PF03972 MmgE/PrpD family 5 440 9.1E-137 T 29-03-2018 IPR005656 MmgE/PrpD GO:0016829 Y880_RS17915 20937510944275851098ed62954bd555 272 Gene3D G3DSA:1.10.3720.10 27 271 1.4E-32 T 29-03-2018 Y880_RS17915 20937510944275851098ed62954bd555 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 268 1.3E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS17915 20937510944275851098ed62954bd555 272 SUPERFAMILY SSF161098 76 261 6.8E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS02960 4f7effa4b9892970cf905db687d60034 492 ProSitePatterns PS00455 Putative AMP-binding domain signature. 147 158 - T 29-03-2018 IPR020845 AMP-binding, conserved site Y880_RS02960 4f7effa4b9892970cf905db687d60034 492 Gene3D G3DSA:3.40.50.980 153 307 8.2E-26 T 29-03-2018 Y880_RS02960 4f7effa4b9892970cf905db687d60034 492 Gene3D G3DSA:3.40.50.980 5 152 1.8E-19 T 29-03-2018 Y880_RS02960 4f7effa4b9892970cf905db687d60034 492 Pfam PF00501 AMP-binding enzyme 21 394 4.4E-53 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Y880_RS02960 4f7effa4b9892970cf905db687d60034 492 Gene3D G3DSA:2.30.38.10 308 388 2.9E-19 T 29-03-2018 Y880_RS02960 4f7effa4b9892970cf905db687d60034 492 SUPERFAMILY SSF56801 11 488 8.37E-89 T 29-03-2018 Y880_RS02960 4f7effa4b9892970cf905db687d60034 492 Gene3D G3DSA:3.30.300.30 389 492 1.8E-10 T 29-03-2018 Y880_RS01965 4b3061eee71e21ae094c15c35a193c08 66 Gene3D G3DSA:3.10.450.50 3 66 4.2E-12 T 29-03-2018 Y880_RS01965 4b3061eee71e21ae094c15c35a193c08 66 Pfam PF02810 SEC-C motif 48 65 2.6E-11 T 29-03-2018 IPR004027 SEC-C motif Y880_RS01965 4b3061eee71e21ae094c15c35a193c08 66 SUPERFAMILY SSF103642 46 65 2.29E-8 T 29-03-2018 Y880_RS08015 41e585346795f233936b277ae92f32cf 138 SUPERFAMILY SSF54631 1 117 8.09E-30 T 29-03-2018 Y880_RS08015 41e585346795f233936b277ae92f32cf 138 Gene3D G3DSA:3.20.20.70 1 128 7.7E-24 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS08015 41e585346795f233936b277ae92f32cf 138 SMART SM00116 74 122 0.0016 T 29-03-2018 IPR000644 CBS domain Y880_RS08015 41e585346795f233936b277ae92f32cf 138 SMART SM00116 10 57 0.0019 T 29-03-2018 IPR000644 CBS domain Y880_RS08015 41e585346795f233936b277ae92f32cf 138 Pfam PF00571 CBS domain 3 53 1.2E-10 T 29-03-2018 IPR000644 CBS domain Y880_RS08015 41e585346795f233936b277ae92f32cf 138 Pfam PF00571 CBS domain 68 119 4.5E-8 T 29-03-2018 IPR000644 CBS domain Y880_RS11610 7f2ed2c448cea2614d099e948d0bd69e 223 Pfam PF01841 Transglutaminase-like superfamily 21 136 9.1E-16 T 29-03-2018 IPR002931 Transglutaminase-like Y880_RS11610 7f2ed2c448cea2614d099e948d0bd69e 223 SUPERFAMILY SSF54001 16 160 3.08E-21 T 29-03-2018 Y880_RS28385 1abf26ad4717a44cb812d090c114f839 383 Gene3D G3DSA:3.20.20.190 39 383 6.6E-69 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS28385 1abf26ad4717a44cb812d090c114f839 383 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 60 374 1.3E-49 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y880_RS28385 1abf26ad4717a44cb812d090c114f839 383 SUPERFAMILY SSF51695 55 380 1.67E-76 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Y880_RS13935 4a6a12a1a03721799b12172e41f15372 283 SUPERFAMILY SSF74650 18 277 1.44E-49 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Y880_RS13935 4a6a12a1a03721799b12172e41f15372 283 PIRSF PIRSF016020 3 283 5.0E-89 T 29-03-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 Y880_RS13935 4a6a12a1a03721799b12172e41f15372 283 Gene3D G3DSA:2.70.98.10 11 279 2.8E-34 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Y880_RS13935 4a6a12a1a03721799b12172e41f15372 283 Pfam PF01263 Aldose 1-epimerase 29 277 3.1E-30 T 29-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 Y880_RS00750 d7591887437f3eda4893bf9e6c973b5b 499 Gene3D G3DSA:1.20.120.330 47 223 2.1E-4 T 29-03-2018 Y880_RS00750 d7591887437f3eda4893bf9e6c973b5b 499 Pfam PF11855 Protein of unknown function (DUF3375) 16 485 6.4E-106 T 29-03-2018 IPR021804 Protein of unknown function DUF3375 Y880_RS19300 065eafd9f15f218b5788e01cd02a4a0d 148 Pfam PF07681 DoxX 15 95 2.6E-15 T 29-03-2018 IPR032808 DoxX family Y880_RS03010 253ec437ee7d34d863ab67ee7b43d4e0 208 SUPERFAMILY SSF52218 1 192 1.13E-50 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS03010 253ec437ee7d34d863ab67ee7b43d4e0 208 Gene3D G3DSA:3.40.50.360 1 199 3.9E-42 T 29-03-2018 IPR029039 Flavoprotein-like domain Y880_RS03010 253ec437ee7d34d863ab67ee7b43d4e0 208 Pfam PF02525 Flavodoxin-like fold 1 182 1.6E-43 T 29-03-2018 IPR003680 Flavodoxin-like fold Y880_RS15210 1b7d2d89699fc8d6b29e0ddc71120e8c 270 Pfam PF13369 Transglutaminase-like superfamily 37 184 2.4E-36 T 29-03-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y880_RS07500 31b674f249422f884120a332f6588794 212 Gene3D G3DSA:3.40.50.620 18 139 1.4E-16 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y880_RS07500 31b674f249422f884120a332f6588794 212 Pfam PF02698 DUF218 domain 27 131 1.7E-14 T 29-03-2018 IPR003848 Domain of unknown function DUF218 Y880_RS28305 cc01c18c0188c67178c8e1dd9ddd6e41 155 Pfam PF10027 Predicted integral membrane protein (DUF2269) 7 154 1.9E-44 T 29-03-2018 IPR018729 Protein of unknown function DUF2269, transmembrane Y880_RS27795 35315f548a31df78a0f34c1373ec7507 292 SUPERFAMILY SSF103481 53 152 1.96E-14 T 29-03-2018 Y880_RS27795 35315f548a31df78a0f34c1373ec7507 292 Pfam PF00892 EamA-like transporter family 159 286 3.4E-8 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS27795 35315f548a31df78a0f34c1373ec7507 292 Pfam PF00892 EamA-like transporter family 16 148 2.6E-15 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS27795 35315f548a31df78a0f34c1373ec7507 292 SUPERFAMILY SSF103481 195 291 1.44E-14 T 29-03-2018 Y880_RS25985 d8f3ada318e929f343fb5898e9805ced 97 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 97 1.0E-38 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS25985 d8f3ada318e929f343fb5898e9805ced 97 Pfam PF09498 Protein of unknown function (DUF2388) 28 96 3.1E-31 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS25955 3318ef3f9e7aa032f088b90b36409c26 433 SUPERFAMILY SSF53756 82 161 2.93E-19 T 29-03-2018 Y880_RS25955 3318ef3f9e7aa032f088b90b36409c26 433 SUPERFAMILY SSF53756 197 421 2.93E-19 T 29-03-2018 Y880_RS25955 3318ef3f9e7aa032f088b90b36409c26 433 Pfam PF13692 Glycosyl transferases group 1 224 346 4.4E-6 T 29-03-2018 Y880_RS25955 3318ef3f9e7aa032f088b90b36409c26 433 Gene3D G3DSA:3.40.50.2000 189 403 5.6E-24 T 29-03-2018 Y880_RS06745 e19254abe2c9a32976220e9ec8106a7c 115 Gene3D G3DSA:2.60.120.10 15 115 4.7E-13 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS06745 e19254abe2c9a32976220e9ec8106a7c 115 SUPERFAMILY SSF51182 29 113 8.19E-16 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS06745 e19254abe2c9a32976220e9ec8106a7c 115 Pfam PF05899 Protein of unknown function (DUF861) 41 111 1.6E-26 T 29-03-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 SUPERFAMILY SSF48264 32 434 2.62E-73 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 Pfam PF00067 Cytochrome P450 309 406 5.1E-14 T 29-03-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 182 197 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 310 321 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 377 386 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 327 354 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 119 130 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 165 181 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 386 397 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 PRINTS PR00359 B-class P450 signature 355 370 6.1E-38 T 29-03-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y880_RS09715 655d4dcf857c4ac97ba366b51c26cb41 444 Gene3D G3DSA:1.10.630.10 21 436 6.4E-62 T 29-03-2018 Y880_RS16855 f25508397f24f0b785cce04510ddf003 611 Pfam PF00999 Sodium/hydrogen exchanger family 14 390 1.4E-36 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y880_RS16855 f25508397f24f0b785cce04510ddf003 611 SUPERFAMILY SSF51735 403 491 1.38E-7 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS16855 f25508397f24f0b785cce04510ddf003 611 Pfam PF02254 TrkA-N domain 403 493 1.5E-5 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y880_RS16855 f25508397f24f0b785cce04510ddf003 611 Gene3D G3DSA:3.40.50.720 400 549 3.2E-7 T 29-03-2018 Y880_RS01000 8e0dceccd66c24c04e436402d4de1b47 139 Gene3D G3DSA:1.20.120.550 7 139 1.7E-14 T 29-03-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain Y880_RS01000 8e0dceccd66c24c04e436402d4de1b47 139 Pfam PF01124 MAPEG family 6 136 2.3E-21 T 29-03-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein Y880_RS01000 8e0dceccd66c24c04e436402d4de1b47 139 SUPERFAMILY SSF161084 11 136 1.27E-16 T 29-03-2018 Y880_RS14550 0f453f7c6743abb42d51c782a2005148 100 Pfam PF09720 Putative addiction module component 46 93 2.1E-5 T 29-03-2018 IPR013406 Conserved hypothetical protein CHP02574, addiction module Y880_RS18575 123abd61caec8e10874139fc2c9e2fd3 232 Pfam PF03922 OmpW family 28 232 1.2E-76 T 29-03-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 Y880_RS18575 123abd61caec8e10874139fc2c9e2fd3 232 SUPERFAMILY SSF56925 28 232 3.14E-26 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS18575 123abd61caec8e10874139fc2c9e2fd3 232 Gene3D G3DSA:2.40.160.20 27 232 1.8E-32 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS18575 123abd61caec8e10874139fc2c9e2fd3 232 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 224 232 - T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 Y880_RS28815 431109e7b0e0c5d76138274e4889e94d 356 Gene3D G3DSA:3.90.550.10 2 241 5.3E-5 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS07730 18ae8d57f4c2a4ce8962812018bacbee 158 Pfam PF13628 Domain of unknown function (DUF4142) 24 152 1.6E-21 T 29-03-2018 IPR025419 Domain of unknown function DUF4142 Y880_RS07730 18ae8d57f4c2a4ce8962812018bacbee 158 Gene3D G3DSA:1.20.1260.10 15 154 2.9E-11 T 29-03-2018 IPR012347 Ferritin-related Y880_RS19960 65cf3c4c57745d153a9e9dad811dab16 102 Pfam PF13467 Ribbon-helix-helix domain 16 83 2.9E-24 T 29-03-2018 IPR027373 Ribbon-helix-helix domain Y880_RS19960 65cf3c4c57745d153a9e9dad811dab16 102 Gene3D G3DSA:1.10.3990.20 11 94 6.3E-30 T 29-03-2018 Y880_RS07910 a0df7ed1934f15c1fcdb3eb498b2184c 79 ProDom PD019076 METALLOTHIONEIN METALLOTHIONEIN ZINC METAL-BINDING CADMIUM CLUSTER MT METAL-THIOLATE COPPER SMTA 6 49 8.0E-18 T 29-03-2018 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 Y880_RS07910 a0df7ed1934f15c1fcdb3eb498b2184c 79 SUPERFAMILY SSF57868 5 50 1.65E-11 T 29-03-2018 IPR017854 Metallothionein domain GO:0046872 Y880_RS07910 a0df7ed1934f15c1fcdb3eb498b2184c 79 Gene3D G3DSA:2.30.170.10 2 49 2.7E-15 T 29-03-2018 Y880_RS07910 a0df7ed1934f15c1fcdb3eb498b2184c 79 Pfam PF02069 Prokaryotic metallothionein 5 49 1.4E-12 T 29-03-2018 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 Y880_RS27975 24f2880e0df30bb9ec53df874b42402b 135 SUPERFAMILY SSF51182 32 117 1.35E-17 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS27975 24f2880e0df30bb9ec53df874b42402b 135 Pfam PF07883 Cupin domain 48 117 2.7E-15 T 29-03-2018 IPR013096 Cupin 2, conserved barrel Y880_RS27975 24f2880e0df30bb9ec53df874b42402b 135 Gene3D G3DSA:2.60.120.10 19 126 2.5E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS09955 3f60db454586883fe5615237b69c4ee8 484 Gene3D G3DSA:1.10.287.470 238 280 1.4E-5 T 29-03-2018 Y880_RS09955 3f60db454586883fe5615237b69c4ee8 484 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 168 399 1.5E-41 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y880_RS09955 3f60db454586883fe5615237b69c4ee8 484 Gene3D G3DSA:2.40.50.100 290 453 0.016 T 29-03-2018 Y880_RS09955 3f60db454586883fe5615237b69c4ee8 484 SUPERFAMILY SSF111369 181 404 1.7E-22 T 29-03-2018 Y880_RS09955 3f60db454586883fe5615237b69c4ee8 484 Gene3D G3DSA:2.40.50.100 184 237 2.9E-11 T 29-03-2018 Y880_RS09955 3f60db454586883fe5615237b69c4ee8 484 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 162 471 4.2E-44 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y880_RS10680 5cb33d209e05b05d3d4dc47bf6fdf3e1 352 Pfam PF01594 AI-2E family transporter 14 339 1.2E-52 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like Y880_RS07990 f14b471a890c454c9644013fa4aeb325 331 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 30 304 2.3E-13 T 29-03-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Y880_RS11705 8f7438b42bb4dbb19dc7bab8ea1b6e89 186 Pfam PF11198 Protein of unknown function (DUF2857) 8 182 1.5E-62 T 29-03-2018 IPR021364 Protein of unknown function DUF2857 Y880_RS02615 1f240604d6dc3feb2ae5aeb7cfd20d21 496 PIRSF PIRSF006060 9 489 4.7E-54 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS02615 1f240604d6dc3feb2ae5aeb7cfd20d21 496 Pfam PF13520 Amino acid permease 27 463 5.4E-41 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS00035 c919efc3bdbc4ebd1fc18979b837218d 238 Pfam PF13103 TonB C terminal 136 198 4.1E-5 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 Y880_RS00035 c919efc3bdbc4ebd1fc18979b837218d 238 SUPERFAMILY SSF74653 126 210 3.14E-10 T 29-03-2018 Y880_RS00035 c919efc3bdbc4ebd1fc18979b837218d 238 Gene3D G3DSA:3.30.1150.10 126 216 6.8E-6 T 29-03-2018 Y880_RS00035 c919efc3bdbc4ebd1fc18979b837218d 238 SMART SM00965 63 114 1.1E-10 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y880_RS02965 1b66128a8dc124a99d024f4d9ba7d883 248 Gene3D G3DSA:3.40.50.150 1 176 6.3E-21 T 29-03-2018 Y880_RS02965 1b66128a8dc124a99d024f4d9ba7d883 248 Pfam PF13649 Methyltransferase domain 39 124 3.4E-13 T 29-03-2018 Y880_RS02965 1b66128a8dc124a99d024f4d9ba7d883 248 SUPERFAMILY SSF53335 3 158 1.15E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS22000 6be9a334895ea9ceddc6b177d00c3014 295 PIRSF PIRSF020419 1 293 1.2E-130 T 29-03-2018 IPR016773 Ferric uptake regulator, CjrA, predicted Y880_RS22000 6be9a334895ea9ceddc6b177d00c3014 295 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 53 247 1.0E-42 T 29-03-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN Y880_RS22000 6be9a334895ea9ceddc6b177d00c3014 295 SUPERFAMILY SSF159501 35 280 2.04E-67 T 29-03-2018 Y880_RS10810 40dc477e73c4345baafded35120548da 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 58 70 1.3E-13 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS10810 40dc477e73c4345baafded35120548da 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 157 185 1.3E-13 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS10810 40dc477e73c4345baafded35120548da 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 359 373 1.3E-13 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS10810 40dc477e73c4345baafded35120548da 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 375 394 1.3E-13 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS10810 40dc477e73c4345baafded35120548da 395 Pfam PF00482 Type II secretion system (T2SS), protein F 266 385 7.0E-21 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS10810 40dc477e73c4345baafded35120548da 395 Pfam PF00482 Type II secretion system (T2SS), protein F 63 185 4.5E-28 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS11915 eb9cf299750ab5673464736563faa815 126 TIGRFAM TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family 13 122 1.5E-39 T 29-03-2018 IPR011090 Integrating conjugative element protein, PFL4709 Y880_RS11915 eb9cf299750ab5673464736563faa815 126 Pfam PF07511 Protein of unknown function (DUF1525) 13 123 5.1E-38 T 29-03-2018 IPR011090 Integrating conjugative element protein, PFL4709 Y880_RS26895 df383cb279eb592222a63429accacd3c 295 Gene3D G3DSA:3.60.15.10 19 258 8.1E-27 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS26895 df383cb279eb592222a63429accacd3c 295 SUPERFAMILY SSF56281 26 253 3.08E-44 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS26895 df383cb279eb592222a63429accacd3c 295 Pfam PF00753 Metallo-beta-lactamase superfamily 47 229 3.7E-12 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS26895 df383cb279eb592222a63429accacd3c 295 SMART SM00849 44 229 3.4E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase Y880_RS12660 c0f67e07e9f427bc80c74d5c45878d08 193 SUPERFAMILY SSF81342 5 190 4.55E-22 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y880_RS12660 c0f67e07e9f427bc80c74d5c45878d08 193 Gene3D G3DSA:1.20.950.20 2 193 1.4E-24 T 29-03-2018 Y880_RS12660 c0f67e07e9f427bc80c74d5c45878d08 193 Pfam PF01292 Prokaryotic cytochrome b561 7 188 4.7E-25 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y880_RS29500 829bfb87cb60de57f4c783025b34dba3 162 Pfam PF01863 Protein of unknown function DUF45 93 154 1.1E-12 T 29-03-2018 IPR002725 Protein of unknown function DUF45 Y880_RS18075 4522eef0e41926de2de81533b838f9db 69 Pfam PF10981 Protein of unknown function (DUF2788) 14 60 3.5E-22 T 29-03-2018 IPR021249 Protein of unknown function DUF2788 Y880_RS06215 12910a3bd026c33718c14b61b079207d 129 Pfam PF12680 SnoaL-like domain 8 114 7.0E-17 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain Y880_RS06215 12910a3bd026c33718c14b61b079207d 129 SUPERFAMILY SSF54427 1 127 4.27E-37 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS06215 12910a3bd026c33718c14b61b079207d 129 Gene3D G3DSA:3.10.450.50 2 128 8.4E-23 T 29-03-2018 Y880_RS14530 2ecc86dc94577ffc865d48d3c2dc42c0 145 PRINTS PR00332 Histidine triad family signature 101 111 5.6E-18 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS14530 2ecc86dc94577ffc865d48d3c2dc42c0 145 PRINTS PR00332 Histidine triad family signature 12 28 5.6E-18 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS14530 2ecc86dc94577ffc865d48d3c2dc42c0 145 PRINTS PR00332 Histidine triad family signature 33 51 5.6E-18 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS14530 2ecc86dc94577ffc865d48d3c2dc42c0 145 Gene3D G3DSA:3.30.428.10 6 143 3.5E-37 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS14530 2ecc86dc94577ffc865d48d3c2dc42c0 145 Pfam PF01230 HIT domain 18 115 4.2E-27 T 29-03-2018 IPR001310 Histidine triad (HIT) protein Y880_RS14530 2ecc86dc94577ffc865d48d3c2dc42c0 145 SUPERFAMILY SSF54197 6 142 1.32E-39 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 Y880_RS01535 c4f2d0e3d064a5b30cfb321fa10820ae 345 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 20 247 3.9E-68 T 29-03-2018 IPR018642 Protein of unknown function DUF2066 Y880_RS12160 e0daaba1d3bab61483f229f0a4fca3b9 256 SUPERFAMILY SSF53213 1 256 2.88E-93 T 29-03-2018 Y880_RS12160 e0daaba1d3bab61483f229f0a4fca3b9 256 PIRSF PIRSF006157 1 256 7.9E-92 T 29-03-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 Y880_RS12160 e0daaba1d3bab61483f229f0a4fca3b9 256 Gene3D G3DSA:3.40.830.10 1 256 1.5E-89 T 29-03-2018 Y880_RS12160 e0daaba1d3bab61483f229f0a4fca3b9 256 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 4 255 6.8E-49 T 29-03-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Y880_RS02025 bede1779e5c3aaf6967eff9281ec14fd 757 Gene3D G3DSA:3.20.20.80 348 734 1.3E-66 T 29-03-2018 Y880_RS02025 bede1779e5c3aaf6967eff9281ec14fd 757 Gene3D G3DSA:3.20.20.80 221 347 9.0E-50 T 29-03-2018 Y880_RS02025 bede1779e5c3aaf6967eff9281ec14fd 757 Gene3D G3DSA:2.60.120.430 37 218 2.0E-28 T 29-03-2018 Y880_RS02025 bede1779e5c3aaf6967eff9281ec14fd 757 SUPERFAMILY SSF51445 387 714 1.82E-32 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily Y880_RS15170 938203e31e7f5c34d86c680a7c502c90 89 Pfam PF10976 Protein of unknown function (DUF2790) 10 87 4.1E-26 T 29-03-2018 IPR021245 Protein of unknown function DUF2790 Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 78 147 6.6E-25 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 SUPERFAMILY SSF101801 74 155 1.2E-25 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 74 149 3.3E-33 T 29-03-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 110 123 2.6E-28 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 77 93 2.6E-28 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 94 110 2.6E-28 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 123 138 2.6E-28 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y880_RS04190 190a8372890f1eec6fb5726828faa044 157 Gene3D G3DSA:2.30.330.10 70 157 1.5E-29 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) Y880_RS08945 5174a07e7468b83eaac064c22f7bc159 173 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 8 168 1.5E-65 T 29-03-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 Y880_RS08945 5174a07e7468b83eaac064c22f7bc159 173 SUPERFAMILY SSF52540 7 167 1.75E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS08945 5174a07e7468b83eaac064c22f7bc159 173 Gene3D G3DSA:3.40.50.300 4 173 8.9E-30 T 29-03-2018 Y880_RS08945 5174a07e7468b83eaac064c22f7bc159 173 Pfam PF13671 AAA domain 9 139 2.3E-10 T 29-03-2018 Y880_RS29880 94a6185bf7259c0d791cfa4e5cdc9a61 115 Pfam PF16459 Phage tail assembly chaperone, TAC 4 107 2.6E-22 T 29-03-2018 IPR024410 Phage tail assembly chaperone protein, TAC Y880_RS21515 ae0da557f840b2ff3b5b1005ee41c412 341 SUPERFAMILY SSF51735 15 263 3.44E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS21515 ae0da557f840b2ff3b5b1005ee41c412 341 SUPERFAMILY SSF51735 303 338 3.44E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain Y880_RS21515 ae0da557f840b2ff3b5b1005ee41c412 341 Gene3D G3DSA:3.40.50.720 1 341 7.3E-50 T 29-03-2018 Y880_RS21515 ae0da557f840b2ff3b5b1005ee41c412 341 Pfam PF01370 NAD dependent epimerase/dehydratase family 17 237 8.4E-15 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y880_RS00780 3eb0d178213a393bd0f5dbcc9d3822c1 1028 ProDom PD144061 ECS5259 GENOME STY4851 YJIT 2 172 8.0E-16 T 29-03-2018 Y880_RS25355 ffe24c214affeab2dbfc90d10437fe4a 130 Gene3D G3DSA:3.30.1050.10 10 124 5.1E-16 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS25355 ffe24c214affeab2dbfc90d10437fe4a 130 SUPERFAMILY SSF55718 11 116 4.71E-5 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS19860 ba44970b8a447ef582ef9f2dcb891600 124 Gene3D G3DSA:1.10.101.10 4 71 0.0017 T 29-03-2018 IPR002477 Peptidoglycan binding-like Y880_RS19745 81ed15339d49d1440dde53c0c58987a1 168 Pfam PF07811 TadE-like protein 26 68 3.7E-6 T 29-03-2018 IPR012495 TadE-like Y880_RS10200 40d96e1f4a3012289978218b916b41d1 141 Pfam PF07849 Protein of unknown function (DUF1641) 95 129 5.7E-10 T 29-03-2018 IPR012440 Protein of unknown function DUF1641 Y880_RS29410 b472ff8464cbf1db1f45572b9bb45c8f 139 Gene3D G3DSA:1.20.1170.10 23 139 1.7E-4 T 29-03-2018 Y880_RS29410 b472ff8464cbf1db1f45572b9bb45c8f 139 Pfam PF06476 Protein of unknown function (DUF1090) 22 128 1.6E-34 T 29-03-2018 IPR009468 Protein of unknown function DUF1090 Y880_RS10660 96ca0f02d4c39f85fd34a4eba74f756e 509 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 497 4.7E-176 T 29-03-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10660 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 339 358 2.0E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10660 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 140 159 2.0E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10660 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 251 275 2.0E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10660 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 176 200 2.0E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10660 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 391 417 2.0E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS10660 96ca0f02d4c39f85fd34a4eba74f756e 509 Pfam PF00361 Proton-conducting membrane transporter 134 433 2.9E-72 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS11425 4ab1c49aad8e69cdb7c669d232d2a4f4 132 PIRSF PIRSF029543 1 131 4.1E-58 T 29-03-2018 IPR016924 Uncharacterised conserved protein UCP029543 Y880_RS29515 21e88aeb14493ef8a925616494677746 117 Pfam PF05656 Protein of unknown function (DUF805) 12 113 1.2E-32 T 29-03-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 Y880_RS10650 a3270687efb81d0b45651a0b900fee97 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 19.323 T 29-03-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 Y880_RS10650 a3270687efb81d0b45651a0b900fee97 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 11 96 4.4E-22 T 29-03-2018 Y880_RS29400 d486da688892f67fbae13c101a785bc8 128 Pfam PF01124 MAPEG family 3 127 7.0E-22 T 29-03-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein Y880_RS29400 d486da688892f67fbae13c101a785bc8 128 Gene3D G3DSA:1.20.120.550 1 128 3.1E-19 T 29-03-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain Y880_RS29400 d486da688892f67fbae13c101a785bc8 128 SUPERFAMILY SSF161084 2 125 9.03E-23 T 29-03-2018 Y880_RS25180 ba57ed75c738de04815d959a7d5dbb4d 444 Gene3D G3DSA:3.90.1150.10 329 444 1.9E-30 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS25180 ba57ed75c738de04815d959a7d5dbb4d 444 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 253 290 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS25180 ba57ed75c738de04815d959a7d5dbb4d 444 Gene3D G3DSA:3.90.1150.10 1 73 0.0094 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS25180 ba57ed75c738de04815d959a7d5dbb4d 444 SUPERFAMILY SSF53383 3 441 8.68E-118 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS25180 ba57ed75c738de04815d959a7d5dbb4d 444 Gene3D G3DSA:3.40.640.10 74 328 2.9E-69 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS25180 ba57ed75c738de04815d959a7d5dbb4d 444 Pfam PF00202 Aminotransferase class-III 30 440 2.9E-89 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y880_RS05505 cedc92548bfc18e0f550eb13d4a3be2e 289 Gene3D G3DSA:2.120.10.30 38 110 2.8E-4 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS05505 cedc92548bfc18e0f550eb13d4a3be2e 289 SUPERFAMILY SSF101898 41 283 4.18E-18 T 29-03-2018 Y880_RS05505 cedc92548bfc18e0f550eb13d4a3be2e 289 Gene3D G3DSA:2.120.10.30 111 252 2.6E-10 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS05505 cedc92548bfc18e0f550eb13d4a3be2e 289 Pfam PF03088 Strictosidine synthase 144 189 1.2E-4 T 29-03-2018 IPR018119 Strictosidine synthase, conserved region GO:0009058|GO:0016844 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 PIRSF PIRSF011271 1 116 1.4E-65 T 29-03-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 Pfam PF05932 Tir chaperone protein (CesT) family 8 116 4.0E-25 T 29-03-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 SUPERFAMILY SSF69635 5 115 2.9E-40 T 29-03-2018 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 Gene3D G3DSA:3.30.1460.10 2 116 1.5E-21 T 29-03-2018 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 30 51 5.2E-51 T 29-03-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 5 28 5.2E-51 T 29-03-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 60 76 5.2E-51 T 29-03-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 79 97 5.2E-51 T 29-03-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y880_RS17425 d6c50fc46c0e3bf471664933b6e34f39 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 97 115 5.2E-51 T 29-03-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y880_RS25410 0f9dd31936654e6a1d16a36dced21200 178 Pfam PF04345 Chorismate lyase 1 175 8.8E-78 T 29-03-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745 Y880_RS25410 0f9dd31936654e6a1d16a36dced21200 178 SUPERFAMILY SSF64288 8 170 2.83E-49 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS25410 0f9dd31936654e6a1d16a36dced21200 178 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 5 172 27.412 T 29-03-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745 Y880_RS25410 0f9dd31936654e6a1d16a36dced21200 178 Gene3D G3DSA:3.40.1410.10 3 171 4.4E-47 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 Pfam PF00186 Dihydrofolate reductase 5 167 9.7E-55 T 29-03-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 PIRSF PIRSF000194 1 168 1.9E-58 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 16 38 - T 29-03-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 100 114 6.8E-16 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 30 38 6.8E-16 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 16 26 6.8E-16 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 43 54 6.8E-16 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 Gene3D G3DSA:3.40.430.10 41 168 5.4E-37 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 Gene3D G3DSA:3.40.430.10 1 40 1.3E-12 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Y880_RS28400 21b0c7617b286ab416ea7f6d54fecf47 168 SUPERFAMILY SSF53597 4 168 2.11E-55 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Y880_RS08350 62552b04bbe8af343a01f10032d3ee4b 107 Pfam PF04341 Protein of unknown function, DUF485 11 98 1.6E-25 T 29-03-2018 IPR007436 Protein of unknown function DUF485 Y880_RS25415 6c8c1a6f3c7aee6bc373c3c1c5674d5d 296 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 11 294 30.374 T 29-03-2018 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Y880_RS25415 6c8c1a6f3c7aee6bc373c3c1c5674d5d 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 73 95 - T 29-03-2018 IPR030470 UbiA prenyltransferase conserved site Y880_RS25415 6c8c1a6f3c7aee6bc373c3c1c5674d5d 296 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 18 293 1.6E-105 T 29-03-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Y880_RS25415 6c8c1a6f3c7aee6bc373c3c1c5674d5d 296 Pfam PF01040 UbiA prenyltransferase family 34 278 2.0E-65 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Y880_RS03235 7a33d09d4bb07d92001ffd4c31bed169 250 Gene3D G3DSA:3.50.50.60 6 158 2.1E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS03235 7a33d09d4bb07d92001ffd4c31bed169 250 SUPERFAMILY SSF51905 39 140 2.17E-11 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS18035 e890e8a92f1c4001146bf899aa97df4d 379 SUPERFAMILY SSF56219 73 375 2.49E-27 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS18035 e890e8a92f1c4001146bf899aa97df4d 379 Gene3D G3DSA:3.60.10.10 61 376 1.0E-26 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS18035 e890e8a92f1c4001146bf899aa97df4d 379 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 76 357 6.2E-11 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS08175 93e398994b6f19512f981670015b9c40 104 SUPERFAMILY SSF54292 18 100 7.47E-24 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS08175 93e398994b6f19512f981670015b9c40 104 Gene3D G3DSA:3.10.20.30 15 89 2.9E-11 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS08175 93e398994b6f19512f981670015b9c40 104 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 95 1.7E-22 T 29-03-2018 Y880_RS05205 d712c2272dc973fe4ed746fc72187f29 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 7.5E-11 T 29-03-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 Y880_RS05205 d712c2272dc973fe4ed746fc72187f29 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 28 1.5E-8 T 29-03-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 Y880_RS15145 c4a090a3e276c9090f045ca7addcd625 205 SUPERFAMILY SSF54621 2 176 1.19E-63 T 29-03-2018 IPR010495 Haem-binding HasA Y880_RS15145 c4a090a3e276c9090f045ca7addcd625 205 Pfam PF06438 Heme-binding protein A (HasA) 1 205 2.7E-77 T 29-03-2018 IPR010495 Haem-binding HasA Y880_RS15145 c4a090a3e276c9090f045ca7addcd625 205 PIRSF PIRSF019876 1 205 1.9E-93 T 29-03-2018 IPR010495 Haem-binding HasA Y880_RS15145 c4a090a3e276c9090f045ca7addcd625 205 Gene3D G3DSA:3.30.1500.10 1 181 8.9E-61 T 29-03-2018 IPR010495 Haem-binding HasA Y880_RS18745 55775a799a6a8fc3858ba561814ee075 86 Pfam PF10976 Protein of unknown function (DUF2790) 11 83 1.1E-22 T 29-03-2018 IPR021245 Protein of unknown function DUF2790 Y880_RS25625 2a3f12c524d6363472282d902c22bfee 156 Gene3D G3DSA:3.10.450.50 12 156 7.0E-72 T 29-03-2018 Y880_RS25625 2a3f12c524d6363472282d902c22bfee 156 Pfam PF07080 Protein of unknown function (DUF1348) 9 138 1.3E-67 T 29-03-2018 IPR009783 Protein of unknown function DUF1348 Y880_RS25625 2a3f12c524d6363472282d902c22bfee 156 SUPERFAMILY SSF54427 4 156 2.12E-80 T 29-03-2018 IPR032710 NTF2-like domain Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 29-03-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 Pfam PF00482 Type II secretion system (T2SS), protein F 72 194 2.0E-28 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 Pfam PF00482 Type II secretion system (T2SS), protein F 274 396 8.1E-28 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 2.2E-35 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 2.2E-35 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 2.2E-35 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 2.2E-35 T 29-03-2018 IPR003004 GspF/PilC family Y880_RS13535 7225cd22d4f4d5036189328937d53be5 405 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 404 8.5E-154 T 29-03-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 Y880_RS07670 ea2079454ef13d775048393fe06a8f75 491 SUPERFAMILY SSF51905 10 232 1.3E-59 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07670 ea2079454ef13d775048393fe06a8f75 491 Gene3D G3DSA:3.50.50.60 12 166 2.0E-42 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07670 ea2079454ef13d775048393fe06a8f75 491 Pfam PF00743 Flavin-binding monooxygenase-like 12 345 8.6E-20 T 29-03-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 Y880_RS07670 ea2079454ef13d775048393fe06a8f75 491 SUPERFAMILY SSF51905 283 487 1.21E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS07670 ea2079454ef13d775048393fe06a8f75 491 Gene3D G3DSA:3.50.50.60 167 491 4.3E-63 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS29470 4c346e45de1b5465b3dc2d2a3d1eea84 113 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 36 104 1.4E-12 T 29-03-2018 IPR018660 C-type lysozyme inhibitor Y880_RS29470 4c346e45de1b5465b3dc2d2a3d1eea84 113 SUPERFAMILY SSF141488 32 111 1.44E-15 T 29-03-2018 IPR018660 C-type lysozyme inhibitor Y880_RS13210 1af68ce814bfb8fd0b477a66eef9e44b 109 Pfam PF05957 Bacterial protein of unknown function (DUF883) 13 109 8.7E-35 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB Y880_RS13210 1af68ce814bfb8fd0b477a66eef9e44b 109 Gene3D G3DSA:1.20.120.20 4 87 2.6E-6 T 29-03-2018 Y880_RS16740 24bd9f9005bb8ab50b2ebd3b9d0ae307 113 SUPERFAMILY SSF54534 2 108 6.48E-40 T 29-03-2018 Y880_RS16740 24bd9f9005bb8ab50b2ebd3b9d0ae307 113 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 17 106 3.1E-32 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y880_RS16740 24bd9f9005bb8ab50b2ebd3b9d0ae307 113 Gene3D G3DSA:3.10.50.40 1 113 2.6E-41 T 29-03-2018 Y880_RS14880 03e6356f2c8c7698f24003f3e31ef791 336 Pfam PF13515 Fusaric acid resistance protein-like 184 316 1.6E-9 T 29-03-2018 Y880_RS14880 03e6356f2c8c7698f24003f3e31ef791 336 PIRSF PIRSF029594 1 336 8.8E-178 T 29-03-2018 IPR016926 Uncharacterised conserved protein UCP029594 Y880_RS14880 03e6356f2c8c7698f24003f3e31ef791 336 Pfam PF11168 Protein of unknown function (DUF2955) 8 147 5.9E-48 T 29-03-2018 IPR022604 Protein of unknown function DUF2955 Y880_RS29295 4fd1232805aac5aafc9f407732caeae2 175 Pfam PF00510 Cytochrome c oxidase subunit III 40 173 1.7E-18 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS29295 4fd1232805aac5aafc9f407732caeae2 175 SUPERFAMILY SSF81452 1 174 2.88E-46 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS29295 4fd1232805aac5aafc9f407732caeae2 175 Gene3D G3DSA:1.20.120.80 1 175 5.3E-45 T 29-03-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y880_RS29420 c4c98711cba1ac49f85b5ac69697cec6 247 Gene3D G3DSA:3.60.21.10 1 244 1.3E-28 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS29420 c4c98711cba1ac49f85b5ac69697cec6 247 SUPERFAMILY SSF56300 150 231 1.82E-24 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS29420 c4c98711cba1ac49f85b5ac69697cec6 247 SUPERFAMILY SSF56300 1 107 1.82E-24 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like Y880_RS29420 c4c98711cba1ac49f85b5ac69697cec6 247 Pfam PF00149 Calcineurin-like phosphoesterase 1 214 1.2E-9 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y880_RS27495 d912720ef560d423590c34d0d2491ec9 200 Pfam PF03975 CheD chemotactic sensory transduction 66 168 1.4E-31 T 29-03-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Y880_RS27495 d912720ef560d423590c34d0d2491ec9 200 SUPERFAMILY SSF64438 24 169 8.42E-49 T 29-03-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Y880_RS27495 d912720ef560d423590c34d0d2491ec9 200 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 19 172 28.442 T 29-03-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Y880_RS15355 7f7eb5ba95b6d5b786a2ce5bc35f0c0a 274 Gene3D G3DSA:1.10.3720.10 24 267 1.8E-22 T 29-03-2018 Y880_RS15355 7f7eb5ba95b6d5b786a2ce5bc35f0c0a 274 SUPERFAMILY SSF161098 68 249 3.53E-30 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS15355 7f7eb5ba95b6d5b786a2ce5bc35f0c0a 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 261 3.2E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS14685 4deeb211b256da76fb2d93b47fd24838 240 Gene3D G3DSA:1.10.1660.10 51 107 4.9E-4 T 29-03-2018 Y880_RS14685 4deeb211b256da76fb2d93b47fd24838 240 Pfam PF13411 MerR HTH family regulatory protein 1 63 4.4E-15 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS14685 4deeb211b256da76fb2d93b47fd24838 240 Gene3D G3DSA:1.10.1660.10 1 50 1.2E-13 T 29-03-2018 Y880_RS14685 4deeb211b256da76fb2d93b47fd24838 240 SMART SM00422 1 64 2.0E-5 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y880_RS14685 4deeb211b256da76fb2d93b47fd24838 240 SUPERFAMILY SSF46955 1 68 5.13E-13 T 29-03-2018 IPR009061 Putative DNA-binding domain Y880_RS11720 5c318467a017f86c6e056a652d2ad2df 175 Pfam PF11358 Protein of unknown function (DUF3158) 11 165 1.1E-72 T 29-03-2018 IPR021502 Protein of unknown function DUF3158 Y880_RS06250 8899f1ea99e8bb8589882175532954f8 259 Pfam PF01925 Sulfite exporter TauE/SafE 15 249 2.2E-40 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y880_RS07380 3abddc0d0462e40e55a8fcc7c29f25b0 300 Gene3D G3DSA:3.30.2350.10 86 300 1.4E-42 T 29-03-2018 Y880_RS07380 3abddc0d0462e40e55a8fcc7c29f25b0 300 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS07380 3abddc0d0462e40e55a8fcc7c29f25b0 300 Pfam PF00849 RNA pseudouridylate synthase 95 242 8.2E-22 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS07380 3abddc0d0462e40e55a8fcc7c29f25b0 300 SUPERFAMILY SSF55120 82 298 3.29E-50 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y880_RS09170 d2d6d094b126aaecc3ea215749e2db76 181 PIRSF PIRSF028301 1 175 6.1E-65 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS09170 d2d6d094b126aaecc3ea215749e2db76 181 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 163 1.4E-58 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS09170 d2d6d094b126aaecc3ea215749e2db76 181 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 10 160 4.1E-54 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y880_RS12770 dd7f2f04f6400ecc506dd0662c30e311 298 SMART SM00729 22 237 1.6E-29 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Y880_RS12770 dd7f2f04f6400ecc506dd0662c30e311 298 Gene3D G3DSA:3.20.20.70 9 288 4.3E-29 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS12770 dd7f2f04f6400ecc506dd0662c30e311 298 Pfam PF04055 Radical SAM superfamily 27 185 2.5E-18 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y880_RS12770 dd7f2f04f6400ecc506dd0662c30e311 298 SUPERFAMILY SSF102114 6 210 1.31E-31 T 29-03-2018 Y880_RS20345 f889acbf6b86213a0f3d0ea2afcd3efd 287 Pfam PF08478 POTRA domain, FtsQ-type 77 145 8.2E-18 T 29-03-2018 IPR013685 POTRA domain, FtsQ-type Y880_RS20345 f889acbf6b86213a0f3d0ea2afcd3efd 287 Pfam PF03799 Cell division protein FtsQ 149 262 8.0E-23 T 29-03-2018 IPR005548 Cell division protein FtsQ/DivIB Y880_RS20345 f889acbf6b86213a0f3d0ea2afcd3efd 287 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 46 270 25.096 T 29-03-2018 IPR026579 Cell division protein FtsQ GO:0090529 Y880_RS09510 2724207cdfc1f85cf76d826984559fee 621 Pfam PF04632 Fusaric acid resistance protein family 19 619 7.8E-147 T 29-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 Y880_RS19840 eaf0a55c9d489aad5180d2e2ef486fa4 253 Gene3D G3DSA:3.20.20.370 2 251 4.6E-15 T 29-03-2018 Y880_RS19840 eaf0a55c9d489aad5180d2e2ef486fa4 253 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 6 159 8.5E-32 T 29-03-2018 IPR018763 Protein of unknown function DUF2334 Y880_RS19840 eaf0a55c9d489aad5180d2e2ef486fa4 253 SUPERFAMILY SSF88713 6 165 3.89E-14 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 1 364 9.3E-109 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 Pfam PF01566 Natural resistance-associated macrophage protein 12 369 2.8E-127 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 PRINTS PR00447 Natural resistance-associated macrophage protein signature 308 325 1.9E-59 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 PRINTS PR00447 Natural resistance-associated macrophage protein signature 99 118 1.9E-59 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 PRINTS PR00447 Natural resistance-associated macrophage protein signature 124 145 1.9E-59 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 PRINTS PR00447 Natural resistance-associated macrophage protein signature 340 359 1.9E-59 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 PRINTS PR00447 Natural resistance-associated macrophage protein signature 280 299 1.9E-59 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 PRINTS PR00447 Natural resistance-associated macrophage protein signature 71 97 1.9E-59 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 PRINTS PR00447 Natural resistance-associated macrophage protein signature 176 199 1.9E-59 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS00665 c6979145cb296338580cf7455dba4e83 398 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 1 396 38.46 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Y880_RS24885 7da47b12cb80b20247db92fd0dfa8cad 146 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 131 2.2E-45 T 29-03-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 Y880_RS24885 7da47b12cb80b20247db92fd0dfa8cad 146 PIRSF PIRSF016548 1 141 7.9E-59 T 29-03-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 Y880_RS08080 5aafceee4d200023f55da18c602167db 69 Pfam PF13396 Phospholipase_D-nuclease N-terminal 21 59 5.9E-10 T 29-03-2018 IPR027379 Cardiolipin synthase N-terminal Y880_RS15110 ef1cce59dd5372ed5f2e2051e6ce8712 390 Pfam PF12698 ABC-2 family transporter protein 38 376 3.5E-21 T 29-03-2018 Y880_RS15110 ef1cce59dd5372ed5f2e2051e6ce8712 390 Gene3D G3DSA:3.40.1710.10 53 205 1.9E-22 T 29-03-2018 Y880_RS17690 54fb0f5286343a0819189bffab7f811f 731 Pfam PF04632 Fusaric acid resistance protein family 30 714 8.7E-216 T 29-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 Y880_RS08990 cb92a6dd3c0ac75003d339611f8c00b9 278 Gene3D G3DSA:3.40.50.300 1 255 2.3E-54 T 29-03-2018 Y880_RS08990 cb92a6dd3c0ac75003d339611f8c00b9 278 SUPERFAMILY SSF52540 9 238 1.82E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y880_RS08990 cb92a6dd3c0ac75003d339611f8c00b9 278 Pfam PF00005 ABC transporter 27 167 1.5E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y880_RS08990 cb92a6dd3c0ac75003d339611f8c00b9 278 SMART SM00382 34 217 1.2E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain Y880_RS00630 624fb19fc74213c720e33cd3bc7cca85 107 Pfam PF11804 Protein of unknown function (DUF3325) 2 101 5.3E-31 T 29-03-2018 IPR021762 Protein of unknown function DUF3325 Y880_RS16490 66add8e4af46f7e406d3fb4af942f4a1 401 Gene3D G3DSA:3.90.1150.10 280 396 7.6E-36 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS16490 66add8e4af46f7e406d3fb4af942f4a1 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 214 233 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Y880_RS16490 66add8e4af46f7e406d3fb4af942f4a1 401 SUPERFAMILY SSF53383 6 398 2.53E-108 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y880_RS16490 66add8e4af46f7e406d3fb4af942f4a1 401 Pfam PF00266 Aminotransferase class-V 24 389 6.1E-137 T 29-03-2018 IPR000192 Aminotransferase class V domain Y880_RS16490 66add8e4af46f7e406d3fb4af942f4a1 401 Gene3D G3DSA:3.40.640.10 31 279 5.7E-58 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Y880_RS04720 d70ebf5e0588d73323c1a7fc6c7eb809 122 SUPERFAMILY SSF103481 5 105 3.66E-16 T 29-03-2018 Y880_RS04720 d70ebf5e0588d73323c1a7fc6c7eb809 122 Pfam PF00893 Small Multidrug Resistance protein 3 93 2.4E-23 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y880_RS26070 3e65ecbde9f301c5be02eb1342918c28 346 Pfam PF11141 Protein of unknown function (DUF2914) 279 344 2.6E-24 T 29-03-2018 IPR022606 Protein of unknown function DUF2914 Y880_RS26070 3e65ecbde9f301c5be02eb1342918c28 346 PIRSF PIRSF029727 1 346 1.9E-182 T 29-03-2018 IPR016937 Uncharacterised conserved protein UCP029727 Y880_RS24520 1d7aa0016c97f4b9155190634e857e6e 147 Gene3D G3DSA:3.10.129.10 8 147 1.0E-39 T 29-03-2018 Y880_RS24520 1d7aa0016c97f4b9155190634e857e6e 147 SUPERFAMILY SSF54637 9 142 6.79E-39 T 29-03-2018 IPR029069 HotDog domain Y880_RS24520 1d7aa0016c97f4b9155190634e857e6e 147 Pfam PF03061 Thioesterase superfamily 28 111 7.3E-15 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y880_RS12690 4318f16e27272734341b899a3c9dc70d 214 SUPERFAMILY SSF53300 60 176 2.83E-14 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS12690 4318f16e27272734341b899a3c9dc70d 214 Pfam PF13519 von Willebrand factor type A domain 59 164 4.0E-9 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS12690 4318f16e27272734341b899a3c9dc70d 214 Gene3D G3DSA:3.40.50.410 27 202 4.5E-14 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS21380 9f980f1efc36de66b5490c66a7dfd718 168 Pfam PF11220 Protein of unknown function (DUF3015) 24 163 3.7E-54 T 29-03-2018 IPR021383 Protein of unknown function DUF3015 Y880_RS26885 c3641bf4249b0cff7cfdd5906774b0ed 168 Gene3D G3DSA:1.20.120.450 2 168 8.6E-72 T 29-03-2018 Y880_RS26885 c3641bf4249b0cff7cfdd5906774b0ed 168 SUPERFAMILY SSF109854 4 166 2.01E-65 T 29-03-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Y880_RS26885 c3641bf4249b0cff7cfdd5906774b0ed 168 Pfam PF09351 Domain of unknown function (DUF1993) 5 165 6.2E-66 T 29-03-2018 IPR018531 Domain of unknown function DUF1993 Y880_RS00460 097852f94367db3e1550b8686897339d 125 Pfam PF16137 Domain of unknown function (DUF4845) 31 116 1.2E-23 T 29-03-2018 IPR032314 Protein of unknown function DUF4845 Y880_RS04125 a0d2f2ad99685fcf9090cd8689799a85 80 SUPERFAMILY SSF47413 17 58 9.78E-5 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS04125 a0d2f2ad99685fcf9090cd8689799a85 80 Gene3D G3DSA:1.10.260.40 6 76 1.5E-6 T 29-03-2018 Y880_RS11300 51e6cc16fb8a0106e70b7b6e783d5498 425 Pfam PF03573 outer membrane porin, OprD family 28 423 3.5E-141 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS11300 51e6cc16fb8a0106e70b7b6e783d5498 425 Gene3D G3DSA:2.40.160.10 1 425 1.6E-115 T 29-03-2018 Y880_RS28005 5ff4a52d448c6464782087b40d924800 171 Pfam PF06127 Protein of unknown function (DUF962) 1 143 1.4E-27 T 29-03-2018 IPR009305 Protein of unknown function DUF962 Y880_RS17350 34d593df41a0579ed2b519c2551bf28a 372 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 353 1.1E-118 T 29-03-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 Y880_RS17350 34d593df41a0579ed2b519c2551bf28a 372 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 352 1.9E-73 T 29-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Y880_RS05680 ccc100c46b7b4c2463b269040eab1019 112 Pfam PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI 26 112 3.8E-27 T 29-03-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 Y880_RS05680 ccc100c46b7b4c2463b269040eab1019 112 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 74 112 9.2E-21 T 29-03-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 Y880_RS11990 73cca901830b1168b2e9da379baea8f2 350 SUPERFAMILY SSF48498 213 335 1.44E-8 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y880_RS11990 73cca901830b1168b2e9da379baea8f2 350 Gene3D G3DSA:1.10.357.10 187 338 1.3E-23 T 29-03-2018 Y880_RS11990 73cca901830b1168b2e9da379baea8f2 350 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 285 330 1.5E-6 T 29-03-2018 Y880_RS26435 102cb37b9e6080fb15f7fc54c5088523 322 SUPERFAMILY SSF51197 92 274 1.85E-22 T 29-03-2018 Y880_RS26435 102cb37b9e6080fb15f7fc54c5088523 322 Gene3D G3DSA:2.60.120.330 80 294 2.1E-25 T 29-03-2018 IPR027443 Isopenicillin N synthase-like Y880_RS26435 102cb37b9e6080fb15f7fc54c5088523 322 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 186 272 1.9E-9 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y880_RS23760 9b8519d1f281a0c7930888e75ed8f7bd 174 PIRSF PIRSF016481 1 174 7.9E-75 T 29-03-2018 IPR007446 Pilus assembly protein PilP Y880_RS23760 9b8519d1f281a0c7930888e75ed8f7bd 174 Pfam PF04351 Pilus assembly protein, PilP 26 170 1.9E-49 T 29-03-2018 IPR007446 Pilus assembly protein PilP Y880_RS18145 8e048150e10378ba929df78e280fbb3d 110 Pfam PF08850 Domain of unknown function (DUF1820) 8 103 1.5E-43 T 29-03-2018 IPR014949 Protein of unknown function DUF1820 Y880_RS18145 8e048150e10378ba929df78e280fbb3d 110 PIRSF PIRSF028538 2 109 9.3E-53 T 29-03-2018 IPR014949 Protein of unknown function DUF1820 Y880_RS01505 c2407d48f878be1d2d7875e10605d52d 77 SUPERFAMILY SSF52833 2 76 3.74E-9 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS01505 c2407d48f878be1d2d7875e10605d52d 77 Pfam PF13192 Thioredoxin domain 5 66 2.6E-7 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS01505 c2407d48f878be1d2d7875e10605d52d 77 Gene3D G3DSA:3.40.30.10 4 68 6.8E-10 T 29-03-2018 Y880_RS20825 1ea2fcfe3f62d1feccae75d3f0bd7c55 336 SUPERFAMILY SSF161098 89 160 1.21E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS20825 1ea2fcfe3f62d1feccae75d3f0bd7c55 336 SUPERFAMILY SSF161098 197 319 1.21E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS20825 1ea2fcfe3f62d1feccae75d3f0bd7c55 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 333 9.6E-48 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS20825 1ea2fcfe3f62d1feccae75d3f0bd7c55 336 Gene3D G3DSA:1.10.3720.10 3 322 2.2E-49 T 29-03-2018 Y880_RS19910 3f480d2857afb1849dd80c82a45f86bf 140 Pfam PF13511 Domain of unknown function (DUF4124) 8 57 8.6E-15 T 29-03-2018 IPR025392 Domain of unknown function DUF4124 Y880_RS19910 3f480d2857afb1849dd80c82a45f86bf 140 Gene3D G3DSA:1.10.260.40 50 135 1.4E-4 T 29-03-2018 Y880_RS28275 7e4b66f55df784c3d441d0d70fbcc629 321 SUPERFAMILY SSF50956 26 316 4.71E-57 T 29-03-2018 Y880_RS28275 7e4b66f55df784c3d441d0d70fbcc629 321 Gene3D G3DSA:2.120.10.30 51 318 6.9E-13 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS28275 7e4b66f55df784c3d441d0d70fbcc629 321 Pfam PF06977 SdiA-regulated 63 314 9.4E-107 T 29-03-2018 IPR009722 SdiA-regulated Y880_RS14090 9539e6e3a5c5d5c9b40e153467cdfc05 312 Gene3D G3DSA:1.20.1170.10 96 298 2.2E-8 T 29-03-2018 Y880_RS14090 9539e6e3a5c5d5c9b40e153467cdfc05 312 Pfam PF02470 MlaD protein 39 116 5.0E-11 T 29-03-2018 IPR003399 Mce/MlaD Y880_RS14090 9539e6e3a5c5d5c9b40e153467cdfc05 312 SUPERFAMILY SSF58104 159 295 5.75E-5 T 29-03-2018 Y880_RS16420 e5dce18c9f5be27837de0c012fcb3caa 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 26.534 T 29-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Y880_RS16420 e5dce18c9f5be27837de0c012fcb3caa 185 SUPERFAMILY SSF55194 1 185 4.71E-70 T 29-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Y880_RS16420 e5dce18c9f5be27837de0c012fcb3caa 185 Gene3D G3DSA:1.10.132.20 74 184 6.8E-39 T 29-03-2018 Y880_RS16420 e5dce18c9f5be27837de0c012fcb3caa 185 Gene3D G3DSA:1.10.132.20 2 73 1.0E-9 T 29-03-2018 Y880_RS16420 e5dce18c9f5be27837de0c012fcb3caa 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.7E-70 T 29-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Y880_RS16420 e5dce18c9f5be27837de0c012fcb3caa 185 Pfam PF01765 Ribosome recycling factor 22 183 5.1E-62 T 29-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Y880_RS24310 59e757988dea5f4b6f147f5e4bc2bc9d 750 Pfam PF05170 AsmA family 1 635 4.6E-191 T 29-03-2018 IPR007844 AsmA Y880_RS13305 dee3d0a070d1a6388161a39ad95bba8a 456 Pfam PF16933 Putative exopolysaccharide Exporter (EPS-E) 1 452 9.9E-158 T 29-03-2018 IPR031617 Putative exopolysaccharide exporter Y880_RS11940 853324054bc78e8d811d7ed7985ca6e4 119 Pfam PF12553 Protein of unknown function (DUF3742) 1 117 3.3E-40 T 29-03-2018 IPR022213 Protein of unknown function DUF3742 Y880_RS08155 96c51431097f76425604a2919bb27d97 140 Pfam PF04120 Low affinity iron permease 3 125 4.9E-50 T 29-03-2018 IPR007251 Low affinity iron permease, Fet4 GO:0055085 Y880_RS25975 585e03e8bccfd8e8df15570741962d40 70 Pfam PF06568 Domain of unknown function (DUF1127) 25 60 1.2E-11 T 29-03-2018 IPR009506 Protein of unknown function DUF1127 Y880_RS26715 d4041de21b3caa53617fc516e60f867b 328 SUPERFAMILY SSF48537 133 320 7.06E-34 T 29-03-2018 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 Y880_RS26715 d4041de21b3caa53617fc516e60f867b 328 Gene3D G3DSA:1.10.575.10 15 320 4.0E-22 T 29-03-2018 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 Y880_RS28260 3e7c7f6aeb97e529971078d3414a0a40 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 297 1.9E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS28260 3e7c7f6aeb97e529971078d3414a0a40 309 Gene3D G3DSA:1.10.3720.10 21 303 1.7E-45 T 29-03-2018 Y880_RS28260 3e7c7f6aeb97e529971078d3414a0a40 309 SUPERFAMILY SSF161098 19 300 4.39E-55 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS27540 2d1a0243164143ef21b154ec7d1a680e 536 Pfam PF00884 Sulfatase 5 420 1.7E-91 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 Y880_RS27540 2d1a0243164143ef21b154ec7d1a680e 536 Gene3D G3DSA:3.40.720.10 1 450 3.7E-115 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Y880_RS27540 2d1a0243164143ef21b154ec7d1a680e 536 ProSitePatterns PS00149 Sulfatases signature 2. 105 115 - T 29-03-2018 IPR024607 Sulfatase, conserved site Y880_RS27540 2d1a0243164143ef21b154ec7d1a680e 536 ProSitePatterns PS00523 Sulfatases signature 1. 49 61 - T 29-03-2018 IPR024607 Sulfatase, conserved site Y880_RS27540 2d1a0243164143ef21b154ec7d1a680e 536 SUPERFAMILY SSF53649 3 526 3.63E-152 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Y880_RS27540 2d1a0243164143ef21b154ec7d1a680e 536 Gene3D G3DSA:3.30.1120.10 451 535 1.8E-19 T 29-03-2018 Y880_RS22890 faab9f432fdf1dff14e78eae25ed06b7 179 Gene3D G3DSA:2.40.33.20 1 179 1.7E-37 T 29-03-2018 Y880_RS22890 faab9f432fdf1dff14e78eae25ed06b7 179 SUPERFAMILY SSF50800 2 169 1.41E-41 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain Y880_RS22890 faab9f432fdf1dff14e78eae25ed06b7 179 Pfam PF03473 MOSC domain 56 164 4.8E-6 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y880_RS02870 d0e38f8bb307d620a2be7f0ab21122af 256 Gene3D G3DSA:3.40.50.1220 1 255 1.6E-49 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS02870 d0e38f8bb307d620a2be7f0ab21122af 256 SUPERFAMILY SSF52467 6 254 1.92E-69 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain Y880_RS02870 d0e38f8bb307d620a2be7f0ab21122af 256 Pfam PF02146 Sir2 family 25 202 3.9E-37 T 29-03-2018 IPR003000 Sirtuin family GO:0070403 Y880_RS17570 d8bfec742b88dc99323941db02980b16 227 SUPERFAMILY SSF103501 4 224 6.28E-64 T 29-03-2018 IPR023234 NarG-like domain Y880_RS17570 d8bfec742b88dc99323941db02980b16 227 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 3 224 2.9E-80 T 29-03-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 Y880_RS17570 d8bfec742b88dc99323941db02980b16 227 Gene3D G3DSA:1.20.950.20 1 216 4.7E-39 T 29-03-2018 Y880_RS17570 d8bfec742b88dc99323941db02980b16 227 Pfam PF02665 Nitrate reductase gamma subunit 5 224 7.8E-77 T 29-03-2018 IPR023234 NarG-like domain Y880_RS17460 527eeaa64bf6a9d4b9ec4d8344c8d174 334 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 1 332 39.909 T 29-03-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Y880_RS17460 527eeaa64bf6a9d4b9ec4d8344c8d174 334 Pfam PF04245 37-kD nucleoid-associated bacterial protein 7 326 5.4E-88 T 29-03-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Y880_RS16410 0a808171b292b287bc848fd95fcd59c5 271 Pfam PF01148 Cytidylyltransferase family 3 264 5.3E-66 T 29-03-2018 Y880_RS16410 0a808171b292b287bc848fd95fcd59c5 271 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 224 250 - T 29-03-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 Y880_RS00225 2b9046e96aa9059d5778719dae667384 168 Gene3D G3DSA:3.40.630.30 1 159 4.0E-22 T 29-03-2018 Y880_RS00225 2b9046e96aa9059d5778719dae667384 168 Pfam PF13527 Acetyltransferase (GNAT) domain 5 129 2.3E-10 T 29-03-2018 Y880_RS00225 2b9046e96aa9059d5778719dae667384 168 SUPERFAMILY SSF55729 1 151 3.71E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS12525 4b78f5df730c93f1fd628929453c41c1 189 Pfam PF02659 Putative manganese efflux pump 31 182 1.0E-52 T 29-03-2018 IPR003810 Putative manganese efflux pump Y880_RS12525 4b78f5df730c93f1fd628929453c41c1 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 2 185 24.996 T 29-03-2018 IPR022929 Putative manganese efflux pump MntP Y880_RS29030 2dc358064b21e98de134db18a151caef 285 Gene3D G3DSA:3.60.40.10 6 284 7.0E-8 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS29030 2dc358064b21e98de134db18a151caef 285 Pfam PF13672 Protein phosphatase 2C 8 253 1.4E-42 T 29-03-2018 Y880_RS29030 2dc358064b21e98de134db18a151caef 285 SUPERFAMILY SSF81606 203 223 2.88E-7 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS29030 2dc358064b21e98de134db18a151caef 285 SUPERFAMILY SSF81606 15 150 2.88E-7 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y880_RS14070 442f4c4bbebf7f238c7a8946ab605cee 123 Pfam PF03692 Putative zinc- or iron-chelating domain 6 97 5.6E-12 T 29-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y880_RS12905 d0585b42beea8db0c7c5b16edf4b406b 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 138 1.6E-26 T 29-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 Y880_RS13240 e5442117c9c1700bb6b15fab40186e85 114 Pfam PF04320 Protein with unknown function (DUF469) 7 105 3.3E-36 T 29-03-2018 IPR007416 Protein of unknown function DUF469 Y880_RS25665 7c51514225cff7b2498fbf17afcc2c6e 68 Gene3D G3DSA:1.10.260.40 2 68 1.5E-11 T 29-03-2018 Y880_RS25665 7c51514225cff7b2498fbf17afcc2c6e 68 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 67 2.5E-23 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS25665 7c51514225cff7b2498fbf17afcc2c6e 68 SMART SM00530 5 61 1.5E-6 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y880_RS25665 7c51514225cff7b2498fbf17afcc2c6e 68 SUPERFAMILY SSF47413 1 65 1.47E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Y880_RS04725 40c12cd486a15ac1a64961910edc90a4 278 Gene3D G3DSA:1.20.1260.10 124 192 0.005 T 29-03-2018 IPR012347 Ferritin-related Y880_RS04725 40c12cd486a15ac1a64961910edc90a4 278 PIRSF PIRSF007580 1 278 4.9E-103 T 29-03-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y880_RS04725 40c12cd486a15ac1a64961910edc90a4 278 Pfam PF10118 Predicted metal-dependent hydrolase 16 262 3.0E-91 T 29-03-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y880_RS09370 b45c3d04391c369fbc49df0bd98237d3 179 PIRSF PIRSF029505 1 179 2.1E-97 T 29-03-2018 IPR016922 Uncharacterised conserved protein UCP029505 Y880_RS09175 dc09be419565ba5586cfdc9b0b258072 494 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 19 489 1.8E-214 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS09175 dc09be419565ba5586cfdc9b0b258072 494 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 68 489 1.8E-192 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y880_RS10725 32e573d66d550c07a83f9f0eeb1afb56 360 SUPERFAMILY SSF52151 160 323 1.41E-15 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Y880_RS10725 32e573d66d550c07a83f9f0eeb1afb56 360 SUPERFAMILY SSF52151 48 106 1.41E-15 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Y880_RS00935 419a6dbe0647294207db5eaf93dd90c3 161 SUPERFAMILY SSF54534 2 141 1.12E-36 T 29-03-2018 Y880_RS00935 419a6dbe0647294207db5eaf93dd90c3 161 Gene3D G3DSA:3.10.50.40 1 161 5.1E-28 T 29-03-2018 Y880_RS00935 419a6dbe0647294207db5eaf93dd90c3 161 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 136 8.8E-11 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y880_RS09630 87e41a2be61c7ae44b5e4b854a96c4f1 178 SUPERFAMILY SSF55729 5 162 7.55E-16 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS09630 87e41a2be61c7ae44b5e4b854a96c4f1 178 Pfam PF00583 Acetyltransferase (GNAT) family 47 150 1.8E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS09630 87e41a2be61c7ae44b5e4b854a96c4f1 178 Gene3D G3DSA:3.40.630.30 3 170 1.6E-17 T 29-03-2018 Y880_RS25810 79d9557776fa3bf4ed648ba0c13d8818 404 Pfam PF04143 Sulphur transport 54 380 2.6E-80 T 29-03-2018 IPR007272 Sulphur transport domain Y880_RS02165 3cbd73cc73c643a2d3d774a501642052 307 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 291 2.6E-54 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS02165 3cbd73cc73c643a2d3d774a501642052 307 Gene3D G3DSA:1.10.3470.10 4 296 1.2E-48 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS05150 7921c8f7d345f436a6a368bd55ebedc3 270 SUPERFAMILY SSF53474 5 258 5.77E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05150 7921c8f7d345f436a6a368bd55ebedc3 270 Pfam PF12697 Alpha/beta hydrolase family 5 252 1.5E-12 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS05150 7921c8f7d345f436a6a368bd55ebedc3 270 Gene3D G3DSA:3.40.50.1820 3 270 3.7E-28 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03055 ad202a13b7f4bbfe5dff5e53bee15fc7 85 Pfam PF10976 Protein of unknown function (DUF2790) 11 83 3.1E-25 T 29-03-2018 IPR021245 Protein of unknown function DUF2790 Y880_RS28425 8b65296bd7dd5cad772b95fa0213e665 179 SUPERFAMILY SSF52317 8 178 2.69E-43 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS28425 8b65296bd7dd5cad772b95fa0213e665 179 Gene3D G3DSA:3.40.50.880 1 179 5.7E-42 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS28425 8b65296bd7dd5cad772b95fa0213e665 179 Pfam PF01965 DJ-1/PfpI family 10 175 4.3E-45 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS28425 8b65296bd7dd5cad772b95fa0213e665 179 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 177 3.2E-44 T 29-03-2018 IPR006286 Peptidase C56, PfpI Y880_RS04660 8f5545cee8a1d4f88e11f2ec153a3601 280 Gene3D G3DSA:1.10.10.60 29 68 1.6E-4 T 29-03-2018 Y880_RS05945 fc13bdca134cefec905266fef57ac2ea 336 Pfam PF12697 Alpha/beta hydrolase family 58 265 5.7E-12 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 Y880_RS05945 fc13bdca134cefec905266fef57ac2ea 336 Gene3D G3DSA:3.40.50.1820 20 314 1.9E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS05945 fc13bdca134cefec905266fef57ac2ea 336 SUPERFAMILY SSF53474 49 313 3.31E-35 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 Gene3D G3DSA:3.50.50.60 6 349 8.9E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 SUPERFAMILY SSF51905 268 371 5.18E-60 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 SUPERFAMILY SSF51905 6 172 5.18E-60 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 3.3E-15 T 29-03-2018 Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 3.3E-15 T 29-03-2018 Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 3.3E-15 T 29-03-2018 Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 3.3E-15 T 29-03-2018 Y880_RS14715 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 Pfam PF01494 FAD binding domain 7 343 2.3E-24 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 Y880_RS00675 04a3cec90680fbfa2e93ece3e339c500 415 Pfam PF07690 Major Facilitator Superfamily 22 369 1.4E-48 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS00675 04a3cec90680fbfa2e93ece3e339c500 415 Gene3D G3DSA:1.20.1250.20 213 409 6.3E-17 T 29-03-2018 Y880_RS00675 04a3cec90680fbfa2e93ece3e339c500 415 Gene3D G3DSA:1.20.1250.20 6 208 3.3E-33 T 29-03-2018 Y880_RS00675 04a3cec90680fbfa2e93ece3e339c500 415 SUPERFAMILY SSF103473 7 405 1.57E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS29555 488b9c356da4d19b32f34da33293983c 204 Pfam PF14300 Domain of unknown function (DUF4375) 73 194 2.0E-26 T 29-03-2018 IPR025402 Domain of unknown function DUF4375 Y880_RS26640 334f2e19f7d0f239cc5539764050883c 295 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 8 285 1.4E-44 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y880_RS26640 334f2e19f7d0f239cc5539764050883c 295 PIRSF PIRSF026649 1 295 6.9E-90 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y880_RS06525 33e5ccab9ea1bb0b2c20fb0b5413a9c2 425 Pfam PF02321 Outer membrane efflux protein 35 211 2.6E-22 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS06525 33e5ccab9ea1bb0b2c20fb0b5413a9c2 425 Pfam PF02321 Outer membrane efflux protein 245 401 2.1E-17 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS06525 33e5ccab9ea1bb0b2c20fb0b5413a9c2 425 Gene3D G3DSA:1.20.1600.10 26 413 1.3E-53 T 29-03-2018 Y880_RS06525 33e5ccab9ea1bb0b2c20fb0b5413a9c2 425 SUPERFAMILY SSF56954 15 413 5.36E-66 T 29-03-2018 Y880_RS30020 98dc765b54fb37ce41f4e996fd415bf3 140 Pfam PF04519 Polymer-forming cytoskeletal 22 119 6.8E-25 T 29-03-2018 IPR007607 Protein of unknown function DUF583 Y880_RS07035 f63e7f7cb7a1650b4aec577e6cb63a86 387 Pfam PF08495 FIST N domain 37 233 2.0E-33 T 29-03-2018 IPR013702 FIST domain, N-terminal Y880_RS07035 f63e7f7cb7a1650b4aec577e6cb63a86 387 Pfam PF10442 FIST C domain 238 364 7.3E-12 T 29-03-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y880_RS07035 f63e7f7cb7a1650b4aec577e6cb63a86 387 SMART SM00897 34 235 1.4E-60 T 29-03-2018 IPR013702 FIST domain, N-terminal Y880_RS07035 f63e7f7cb7a1650b4aec577e6cb63a86 387 SMART SM01204 236 366 3.6E-29 T 29-03-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y880_RS00740 f1d2042bd1df2724593de07421484eb9 501 Pfam PF13148 Protein of unknown function (DUF3987) 63 423 7.8E-80 T 29-03-2018 IPR025048 Protein of unknown function DUF3987) Y880_RS10580 57d2f0dffd83a804487e7276343f2b36 273 Pfam PF00263 Bacterial type II and III secretion system protein 137 248 1.5E-7 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 Y880_RS10580 57d2f0dffd83a804487e7276343f2b36 273 Pfam PF03958 Bacterial type II/III secretion system short domain 26 83 3.2E-10 T 29-03-2018 IPR005644 NolW-like Y880_RS19970 51ccafb6b8b97c20e4a9655e7421db84 203 Pfam PF11008 Protein of unknown function (DUF2846) 15 146 1.0E-33 T 29-03-2018 IPR022548 Domain of unknown function DUF2846 Y880_RS08305 cf77b7dfb95ce3f9e491f4b3588a7bdb 206 Pfam PF04403 Paraquat-inducible protein A 44 198 8.8E-56 T 29-03-2018 IPR007498 Paraquat-inducible protein A Y880_RS00385 aa59e7b8a846500cb2ad902c10406e13 427 Pfam PF03573 outer membrane porin, OprD family 37 425 2.4E-168 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS00385 aa59e7b8a846500cb2ad902c10406e13 427 Gene3D G3DSA:2.40.160.10 6 427 9.6E-131 T 29-03-2018 Y880_RS28170 120add03815e3c86380fa78e377ef552 203 Gene3D G3DSA:3.40.30.10 120 202 0.1 T 29-03-2018 Y880_RS28170 120add03815e3c86380fa78e377ef552 203 Gene3D G3DSA:3.40.30.10 45 109 0.12 T 29-03-2018 Y880_RS28170 120add03815e3c86380fa78e377ef552 203 SUPERFAMILY SSF52833 56 201 1.73E-14 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS02085 05dad254cb05ae22ea716fddeb88da4d 174 PIRSF PIRSF019239 10 174 1.2E-42 T 29-03-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Y880_RS02085 05dad254cb05ae22ea716fddeb88da4d 174 Pfam PF01899 Na+/H+ ion antiporter subunit 21 168 2.9E-43 T 29-03-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Y880_RS25990 35d16456cca63b5a16e2060c2c15a56f 111 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 6 110 7.2E-40 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS25990 35d16456cca63b5a16e2060c2c15a56f 111 Pfam PF09498 Protein of unknown function (DUF2388) 41 110 3.1E-31 T 29-03-2018 IPR012661 Conserved hypothetical protein CHP02448 Y880_RS28110 7784db45bb1394634388d92bef2cd011 250 Gene3D G3DSA:3.40.50.880 14 250 4.2E-42 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS28110 7784db45bb1394634388d92bef2cd011 250 SUPERFAMILY SSF52317 4 246 1.92E-39 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS28110 7784db45bb1394634388d92bef2cd011 250 Pfam PF07722 Peptidase C26 5 223 6.6E-77 T 29-03-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 Y880_RS21455 ec313e96fc64c9fecab6baf67d8d30c7 179 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 39 80 1.9E-5 T 29-03-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Y880_RS21455 ec313e96fc64c9fecab6baf67d8d30c7 179 Gene3D G3DSA:1.10.150.120 84 177 1.4E-21 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS21455 ec313e96fc64c9fecab6baf67d8d30c7 179 SUPERFAMILY SSF47741 99 174 2.22E-19 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS21455 ec313e96fc64c9fecab6baf67d8d30c7 179 SUPERFAMILY SSF54292 4 87 2.1E-17 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y880_RS21455 ec313e96fc64c9fecab6baf67d8d30c7 179 Pfam PF01799 [2Fe-2S] binding domain 82 166 9.8E-21 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y880_RS21455 ec313e96fc64c9fecab6baf67d8d30c7 179 Gene3D G3DSA:3.10.20.30 1 83 3.8E-20 T 29-03-2018 IPR012675 Beta-grasp domain Y880_RS12940 69d9a71aa0861f4e9199e9cf0b5c214a 199 Gene3D G3DSA:2.40.10.220 2 191 5.0E-20 T 29-03-2018 Y880_RS12940 69d9a71aa0861f4e9199e9cf0b5c214a 199 Pfam PF07238 PilZ domain 78 174 1.2E-11 T 29-03-2018 IPR009875 PilZ domain GO:0035438 Y880_RS01195 e530113ea2d480ac2ac97a106acec421 212 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 65 184 4.0E-20 T 29-03-2018 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Y880_RS23870 9a074bb9ba9a8da69edd38438975a1d2 91 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 90 4.9E-35 T 29-03-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein Y880_RS23870 9a074bb9ba9a8da69edd38438975a1d2 91 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 1 91 2.0E-36 T 29-03-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein Y880_RS27650 db2893a3b290e89d091b03ea81b27a0e 287 SUPERFAMILY SSF52096 4 238 5.91E-37 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS27650 db2893a3b290e89d091b03ea81b27a0e 287 Gene3D G3DSA:3.90.226.10 4 271 4.6E-38 T 29-03-2018 Y880_RS27650 db2893a3b290e89d091b03ea81b27a0e 287 Pfam PF01039 Carboxyl transferase domain 18 234 2.1E-14 T 29-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 Y880_RS27650 db2893a3b290e89d091b03ea81b27a0e 287 TIGRFAM TIGR03133 malonate_beta: biotin-independent malonate decarboxylase, beta subunit 11 281 1.1E-116 T 29-03-2018 IPR017556 Biotin-independent malonate decarboxylase, beta subunit GO:0016831|GO:0044262 MetaCyc: PWY-6060 Y880_RS11880 1fbf52bbb84d8c6c9d688adb9b75e639 141 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 14 129 1.4E-43 T 29-03-2018 IPR021877 Protein of unknown function DUF3487 Y880_RS11880 1fbf52bbb84d8c6c9d688adb9b75e639 141 Pfam PF11990 Protein of unknown function (DUF3487) 13 130 6.5E-43 T 29-03-2018 IPR021877 Protein of unknown function DUF3487 Y880_RS07080 ab45df705a6b534b13f96ce0b22ae178 23 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 2 22 4.4E-13 T 29-03-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 Y880_RS07080 ab45df705a6b534b13f96ce0b22ae178 23 Pfam PF08042 PqqA family 1 19 3.6E-11 T 29-03-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 Y880_RS07080 ab45df705a6b534b13f96ce0b22ae178 23 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 1 23 11.953 T 29-03-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 Y880_RS16895 3b2e3244b27a94faf6b6e3fd2f7d0ec5 266 Pfam PF01578 Cytochrome C assembly protein 38 263 2.6E-41 T 29-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Y880_RS00370 79964e803e2e1b0e4b73bfb0d8c98e51 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 4.8E-138 T 29-03-2018 IPR002823 Protein of unknown function DUF112, transmembrane Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 419 2.3E-75 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 1.7E-12 T 29-03-2018 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 1.7E-12 T 29-03-2018 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 1.7E-12 T 29-03-2018 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 107 127 1.7E-12 T 29-03-2018 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 203 221 1.7E-12 T 29-03-2018 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 SUPERFAMILY SSF103473 249 420 4.45E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 SUPERFAMILY SSF103473 9 199 4.45E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 SUPERFAMILY SSF103473 455 485 4.45E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 Gene3D G3DSA:1.20.1250.20 1 198 3.5E-37 T 29-03-2018 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 Gene3D G3DSA:1.20.1250.20 253 492 4.8E-24 T 29-03-2018 Y880_RS27830 fb1de89506885fb1462ea44f3512d4f4 501 Pfam PF07690 Major Facilitator Superfamily 18 410 2.6E-55 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y880_RS27620 1d421c59d603fcdc1e0732c4d4458a91 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 132 4.0E-28 T 29-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 Y880_RS22955 f1118ec265b3bffb3091e51ca8e7263d 374 Pfam PF00487 Fatty acid desaturase 72 340 5.4E-31 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y880_RS27300 f9f9a41bbaf99ba39079742df660c095 365 Gene3D G3DSA:1.10.3470.10 9 341 3.6E-33 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS27300 f9f9a41bbaf99ba39079742df660c095 365 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 338 3.2E-47 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Y880_RS14175 6b10fd27966d0c53fb2a110234f9e196 374 SUPERFAMILY SSF55729 174 344 2.28E-35 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS14175 6b10fd27966d0c53fb2a110234f9e196 374 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 9 373 2.0E-147 T 29-03-2018 IPR007434 Peptidogalycan biosysnthesis/recognition Y880_RS14175 6b10fd27966d0c53fb2a110234f9e196 374 Gene3D G3DSA:3.40.630.30 185 353 2.8E-32 T 29-03-2018 Y880_RS14175 6b10fd27966d0c53fb2a110234f9e196 374 Gene3D G3DSA:3.40.630.30 7 184 4.2E-11 T 29-03-2018 Y880_RS13430 5ddc849581bc8fde7abd957b5fcdc991 266 Pfam PF10977 Protein of unknown function (DUF2797) 29 262 2.9E-98 T 29-03-2018 IPR021246 Protein of unknown function DUF2797 Y880_RS26290 4bfa13b914e7389c477be88d078d6c6a 247 Gene3D G3DSA:1.25.40.10 21 181 1.3E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS26290 4bfa13b914e7389c477be88d078d6c6a 247 SUPERFAMILY SSF48452 32 106 1.46E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS03710 b548c1af9a4994c1a0898efc7303d979 297 Pfam PF00892 EamA-like transporter family 150 280 1.5E-17 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y880_RS03710 b548c1af9a4994c1a0898efc7303d979 297 SUPERFAMILY SSF103481 47 137 1.31E-6 T 29-03-2018 Y880_RS03710 b548c1af9a4994c1a0898efc7303d979 297 SUPERFAMILY SSF103481 185 282 1.19E-7 T 29-03-2018 Y880_RS05060 152be02a15e266ec35a48dfc60e656ce 301 SUPERFAMILY SSF53850 51 266 2.28E-19 T 29-03-2018 Y880_RS05060 152be02a15e266ec35a48dfc60e656ce 301 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 136 265 1.1E-7 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y880_RS05060 152be02a15e266ec35a48dfc60e656ce 301 Gene3D G3DSA:3.40.190.10 41 271 2.0E-9 T 29-03-2018 Y880_RS14505 b0e7016d76b0c341c2437810d6f870e7 893 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 78 262 7.2E-9 T 29-03-2018 IPR018712 Domain of unknown function DUF2235 Y880_RS14505 b0e7016d76b0c341c2437810d6f870e7 893 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 278 422 4.3E-16 T 29-03-2018 IPR018712 Domain of unknown function DUF2235 Y880_RS15715 3609310dd6bca434afd108c2233c23fe 64 Pfam PF00403 Heavy-metal-associated domain 4 60 3.5E-9 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS15715 3609310dd6bca434afd108c2233c23fe 64 Gene3D G3DSA:3.30.70.100 1 61 9.8E-13 T 29-03-2018 Y880_RS15715 3609310dd6bca434afd108c2233c23fe 64 SUPERFAMILY SSF55008 2 61 1.57E-13 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y880_RS24730 801e7f77996d56b1e156f376246ea866 103 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 39 103 5.2E-32 T 29-03-2018 IPR012662 Conserved hypothetical protein CHP02449 Y880_RS15275 ad1fd0cd594759a79383270f16b315c4 129 Pfam PF03788 LrgA family 23 115 1.2E-24 T 29-03-2018 IPR005538 LrgA/CidA family GO:0016021 Y880_RS19880 35fbccb431880e94f1a8ecdacaae3bdd 326 Pfam PF01944 Stage II sporulation protein M 110 290 8.3E-36 T 29-03-2018 IPR002798 Stage II sporulation protein M-like Y880_RS10645 50059b43a6a948912fea92a729cf202f 166 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 159 5.1E-33 T 29-03-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y880_RS26190 363cf9e9e8db0b7bd8c39d5bff3350d4 262 SUPERFAMILY SSF81345 3 253 7.72E-40 T 29-03-2018 IPR029022 ABC transporter, BtuC-like Y880_RS26190 363cf9e9e8db0b7bd8c39d5bff3350d4 262 Gene3D G3DSA:1.10.3470.10 1 262 5.4E-28 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like Y880_RS26190 363cf9e9e8db0b7bd8c39d5bff3350d4 262 Pfam PF00950 ABC 3 transport family 2 256 2.3E-78 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Y880_RS28350 ae9ccc4ae63f18c6ecea1ab93637eb4b 267 Pfam PF01925 Sulfite exporter TauE/SafE 7 257 7.0E-57 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y880_RS17760 ae6f135ad9687575257fdefb30fdbed5 151 Pfam PF15648 Restriction endonuclease fold toxin 5 6 93 3.0E-22 T 29-03-2018 IPR028904 Tox-REase-5 domain Y880_RS05695 97d1994286a0f461ac614dc201337afe 214 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 19 187 1.5E-40 T 29-03-2018 IPR012842 Type III secretion system HrpE/YscL Y880_RS05695 97d1994286a0f461ac614dc201337afe 214 Pfam PF02108 Flagellar assembly protein FliH 74 194 2.0E-17 T 29-03-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Y880_RS11850 adaa6fec8d7133a9001a467a55c9c559 176 Pfam PF11072 Protein of unknown function (DUF2859) 30 174 3.7E-55 T 29-03-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y880_RS11850 adaa6fec8d7133a9001a467a55c9c559 176 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 72 175 2.9E-42 T 29-03-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y880_RS25280 61ecc2e2d71d6dc55c508a0e12af242d 259 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 253 3.0E-58 T 29-03-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Y880_RS25280 61ecc2e2d71d6dc55c508a0e12af242d 259 Gene3D G3DSA:3.60.10.10 1 259 1.7E-35 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS25280 61ecc2e2d71d6dc55c508a0e12af242d 259 SUPERFAMILY SSF56219 1 254 2.49E-53 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS25280 61ecc2e2d71d6dc55c508a0e12af242d 259 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 233 2.2E-11 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS13160 78cd30d6bfad44c993df279ff032d902 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 72 2.0E-21 T 29-03-2018 IPR010305 Protein of unknown function DUF903 Y880_RS13160 78cd30d6bfad44c993df279ff032d902 73 SUPERFAMILY SSF50182 22 72 2.29E-16 T 29-03-2018 IPR010920 LSM domain Y880_RS13160 78cd30d6bfad44c993df279ff032d902 73 Gene3D G3DSA:2.30.30.100 22 72 6.0E-27 T 29-03-2018 Y880_RS19775 9cd339bff4b783317c7d3a691dc2c349 303 Pfam PF00482 Type II secretion system (T2SS), protein F 159 287 3.1E-15 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS01135 6c0b3d15759ffb390b49e3a16df8e946 88 Pfam PF10976 Protein of unknown function (DUF2790) 8 86 2.9E-34 T 29-03-2018 IPR021245 Protein of unknown function DUF2790 Y880_RS07290 49ffc92aa47dc131ff2236100529a6b0 333 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 9 318 4.8E-103 T 29-03-2018 IPR016833 Putative sodium bile acid cotransporter Y880_RS07290 49ffc92aa47dc131ff2236100529a6b0 333 PIRSF PIRSF026166 1 332 2.0E-142 T 29-03-2018 IPR016833 Putative sodium bile acid cotransporter Y880_RS18295 7ee13ff25ae488880b569ebfee5a825d 239 SUPERFAMILY SSF50486 15 220 2.43E-53 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 Y880_RS18295 7ee13ff25ae488880b569ebfee5a825d 239 Gene3D G3DSA:3.10.300.10 13 216 1.1E-41 T 29-03-2018 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y880_RS18295 7ee13ff25ae488880b569ebfee5a825d 239 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 19 213 25.907 T 29-03-2018 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y880_RS18295 7ee13ff25ae488880b569ebfee5a825d 239 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 21 205 9.6E-36 T 29-03-2018 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y880_RS02075 73eb7f97c65cd71f1475c578c6df03ab 112 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 102 8.0E-26 T 29-03-2018 Y880_RS15050 ba7b278d68e8d1fa807bf9b0d7bede70 100 SUPERFAMILY SSF54909 3 89 4.6E-23 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS15050 ba7b278d68e8d1fa807bf9b0d7bede70 100 Gene3D G3DSA:3.30.70.100 1 93 3.3E-20 T 29-03-2018 Y880_RS15050 ba7b278d68e8d1fa807bf9b0d7bede70 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 4 74 4.9E-19 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS11455 f4a3128ee0d84a634372ca7b0d60a33b 185 Pfam PF11188 Protein of unknown function (DUF2975) 71 181 1.6E-10 T 29-03-2018 IPR021354 Protein of unknown function DUF2975 Y880_RS08660 674ddbd4cae7dfb201bedc6123a5b8fe 238 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 57 211 3.6E-36 T 29-03-2018 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 Y880_RS25585 9dfe4dd834806c4f85da8d254b490c49 294 Gene3D G3DSA:3.20.20.70 2 294 5.6E-104 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y880_RS25585 9dfe4dd834806c4f85da8d254b490c49 294 Pfam PF05853 beta-keto acid cleavage enzyme 5 291 5.0E-97 T 29-03-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247|KEGG: 00600+2.3.1.24 Y880_RS11410 bde914a5ba80512ee1353ced965d8312 427 SUPERFAMILY SSF51905 345 413 1.29E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS11410 bde914a5ba80512ee1353ced965d8312 427 SUPERFAMILY SSF51905 30 253 1.29E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS11410 bde914a5ba80512ee1353ced965d8312 427 Pfam PF01266 FAD dependent oxidoreductase 31 381 8.8E-54 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y880_RS11410 bde914a5ba80512ee1353ced965d8312 427 Gene3D G3DSA:3.50.50.60 18 402 5.2E-39 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y880_RS02755 11bc2c1ac1f3055e977e590ad83e308e 109 Pfam PF03927 NapD protein 6 78 1.5E-25 T 29-03-2018 IPR005623 Chaperone NapD, nitrate reductase assembly Y880_RS25765 6468f166b37505217e26dfa94d582a9a 182 Pfam PF11736 Protein of unknown function (DUF3299) 29 175 1.7E-45 T 29-03-2018 IPR021727 Protein of unknown function DUF3299 Y880_RS13270 4af6873c4983e76d0efc84d7c731789c 93 Pfam PF11197 Protein of unknown function (DUF2835) 25 91 1.4E-25 T 29-03-2018 IPR021363 Protein of unknown function DUF2835 Y880_RS12190 e9cac6ec199a4a9441dc78fa396baff6 77 Pfam PF06568 Domain of unknown function (DUF1127) 26 61 1.9E-11 T 29-03-2018 IPR009506 Protein of unknown function DUF1127 Y880_RS04755 dcf64c2e19987f934f97f95243b89b51 69 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 2.9E-17 T 29-03-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Y880_RS04755 dcf64c2e19987f934f97f95243b89b51 69 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 3 45 1.1E-21 T 29-03-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Y880_RS26180 f39b2fc03d9319e97053cf254b469b03 167 Pfam PF01475 Ferric uptake regulator family 35 154 1.3E-11 T 29-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Y880_RS26180 f39b2fc03d9319e97053cf254b469b03 167 Gene3D G3DSA:1.10.10.10 12 106 2.6E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS26180 f39b2fc03d9319e97053cf254b469b03 167 SUPERFAMILY SSF46785 29 159 4.25E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain Y880_RS23380 c3d57792d30b8422a8afc242d0db6228 152 Pfam PF06853 Protein of unknown function (DUF1249) 27 145 6.1E-44 T 29-03-2018 IPR009659 Protein of unknown function DUF1249 Y880_RS27555 ec5fb8721261da9650a0851bcfd6260e 353 SUPERFAMILY SSF53850 32 274 2.3E-39 T 29-03-2018 Y880_RS27555 ec5fb8721261da9650a0851bcfd6260e 353 Pfam PF09084 NMT1/THI5 like 68 260 2.4E-19 T 29-03-2018 IPR015168 SsuA/THI5-like Y880_RS27555 ec5fb8721261da9650a0851bcfd6260e 353 Gene3D G3DSA:3.40.190.10 30 149 6.5E-12 T 29-03-2018 Y880_RS27555 ec5fb8721261da9650a0851bcfd6260e 353 Gene3D G3DSA:3.40.190.10 150 339 1.6E-26 T 29-03-2018 Y880_RS05835 f76848b4efcf17adb66c7bff156909d8 125 Gene3D G3DSA:3.40.30.10 9 114 1.5E-9 T 29-03-2018 Y880_RS05835 f76848b4efcf17adb66c7bff156909d8 125 SUPERFAMILY SSF52833 4 115 5.21E-16 T 29-03-2018 IPR012336 Thioredoxin-like fold Y880_RS00275 07131d27c28d86a21517fc4ee124bf6a 271 Pfam PF16106 Domain of unknown function (DUF4824) 19 265 1.2E-90 T 29-03-2018 IPR032249 Protein of unknown function DUF4824 Y880_RS22925 c514cfa23c0e64d01b642496ac4295d9 255 SUPERFAMILY SSF56524 49 254 3.4E-66 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS22925 c514cfa23c0e64d01b642496ac4295d9 255 Gene3D G3DSA:3.90.420.10 69 254 1.1E-58 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS22925 c514cfa23c0e64d01b642496ac4295d9 255 Pfam PF00174 Oxidoreductase molybdopterin binding domain 100 244 1.2E-35 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y880_RS10255 9ce38a4764219eb8adfd336d7f19ab0b 382 Pfam PF00487 Fatty acid desaturase 114 329 1.3E-27 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y880_RS23360 1225d7d7a97cc206be909fdd85a6be8c 337 Pfam PF13449 Esterase-like activity of phytase 44 194 1.2E-12 T 29-03-2018 IPR027372 Phytase-like domain Y880_RS23360 1225d7d7a97cc206be909fdd85a6be8c 337 SUPERFAMILY SSF101898 44 276 2.88E-8 T 29-03-2018 Y880_RS23360 1225d7d7a97cc206be909fdd85a6be8c 337 Gene3D G3DSA:2.120.10.30 27 211 3.0E-5 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y880_RS04750 a02468acfd347f7a99e66d50ff7da8c8 227 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 11 212 1.2E-55 T 29-03-2018 Y880_RS13410 f1789a504053a3e88cd6b5186fae97de 455 Pfam PF07044 Protein of unknown function (DUF1329) 84 450 5.1E-162 T 29-03-2018 IPR010752 Protein of unknown function DUF1329 Y880_RS13410 f1789a504053a3e88cd6b5186fae97de 455 Gene3D G3DSA:2.50.20.10 160 451 8.6E-58 T 29-03-2018 Y880_RS03730 a62cded52301615e17f81d9c99d0ae00 280 Pfam PF04773 FecR protein 68 160 1.4E-19 T 29-03-2018 IPR006860 FecR protein Y880_RS03730 a62cded52301615e17f81d9c99d0ae00 280 Pfam PF16344 Domain of unknown function (DUF4974) 173 266 9.4E-8 T 29-03-2018 IPR032508 Protein FecR, C-terminal Y880_RS03730 a62cded52301615e17f81d9c99d0ae00 280 PIRSF PIRSF018266 6 277 2.0E-74 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y880_RS08300 51dc13cf053a50357ae5e4320db69af8 337 Gene3D G3DSA:3.40.605.10 2 87 2.0E-16 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS08300 51dc13cf053a50357ae5e4320db69af8 337 Gene3D G3DSA:3.40.309.10 88 264 2.3E-18 T 29-03-2018 Y880_RS08300 51dc13cf053a50357ae5e4320db69af8 337 SUPERFAMILY SSF53720 2 328 7.2E-59 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS08300 51dc13cf053a50357ae5e4320db69af8 337 Pfam PF00171 Aldehyde dehydrogenase family 6 266 1.9E-22 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS27110 118b3aff3d316b58c8b8e8b5006847a7 304 SUPERFAMILY SSF110296 74 285 2.35E-5 T 29-03-2018 Y880_RS27110 118b3aff3d316b58c8b8e8b5006847a7 304 Gene3D G3DSA:2.130.10.10 43 301 1.1E-8 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Y880_RS24710 b4f445676af8498b3b6b7ec26806af50 160 Gene3D G3DSA:3.10.129.10 3 153 2.5E-21 T 29-03-2018 Y880_RS24710 b4f445676af8498b3b6b7ec26806af50 160 SUPERFAMILY SSF54637 11 151 3.69E-25 T 29-03-2018 IPR029069 HotDog domain Y880_RS24710 b4f445676af8498b3b6b7ec26806af50 160 Pfam PF14539 Domain of unknown function (DUF4442) 9 150 2.3E-30 T 29-03-2018 IPR027961 Protein of unknown function DUF4442 Y880_RS29645 c70cccf9e28718aeeee1bd968c474fad 423 Pfam PF04285 Protein of unknown function (DUF444) 4 419 5.0E-180 T 29-03-2018 IPR006698 Uncharacterised protein family UPF0229 Y880_RS29645 c70cccf9e28718aeeee1bd968c474fad 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 41.565 T 29-03-2018 IPR006698 Uncharacterised protein family UPF0229 Y880_RS29645 c70cccf9e28718aeeee1bd968c474fad 423 Gene3D G3DSA:3.40.50.410 225 363 0.0011 T 29-03-2018 IPR002035 von Willebrand factor, type A Y880_RS22175 ed6cb0d3e417c58befec829429760ef5 114 Pfam PF04972 BON domain 45 107 2.4E-18 T 29-03-2018 IPR007055 BON domain Y880_RS22175 ed6cb0d3e417c58befec829429760ef5 114 SMART SM00749 50 113 7.1E-10 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria Y880_RS13435 28e4a4f78843da2ac6d2ce917af693a5 87 Pfam PF07023 Protein of unknown function (DUF1315) 6 67 8.4E-29 T 29-03-2018 IPR009749 Protein of unknown function DUF1315 Y880_RS00120 7011306f8ab4e27897cea0329613cee0 200 Pfam PF05598 Transposase domain (DUF772) 93 143 5.6E-11 T 29-03-2018 IPR008490 Transposase InsH, N-terminal Y880_RS00120 7011306f8ab4e27897cea0329613cee0 200 Gene3D G3DSA:3.40.1620.10 5 54 9.0E-6 T 29-03-2018 Y880_RS00120 7011306f8ab4e27897cea0329613cee0 200 SUPERFAMILY SSF143120 7 51 2.88E-5 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Y880_RS16610 43a8a3ac84058f13a7a4cc6967c62a42 134 Pfam PF14346 Domain of unknown function (DUF4398) 28 125 3.5E-30 T 29-03-2018 IPR025511 Domain of unknown function DUF4398 Y880_RS11510 30e7ef5822fea2838d3ddbf7afeddf6f 438 Gene3D G3DSA:2.60.40.10 335 438 1.5E-62 T 29-03-2018 IPR013783 Immunoglobulin-like fold Y880_RS11510 30e7ef5822fea2838d3ddbf7afeddf6f 438 Pfam PF13088 BNR repeat-like domain 43 292 1.1E-8 T 29-03-2018 IPR011040 Sialidases KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 Y880_RS11510 30e7ef5822fea2838d3ddbf7afeddf6f 438 Gene3D G3DSA:2.120.10.10 13 327 7.2E-49 T 29-03-2018 Y880_RS11510 30e7ef5822fea2838d3ddbf7afeddf6f 438 SUPERFAMILY SSF50939 26 307 3.78E-24 T 29-03-2018 IPR011040 Sialidases KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 Y880_RS28700 cc243581fe7fcac6c3b1e574010a0de6 135 SMART SM00448 8 121 6.9E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS28700 cc243581fe7fcac6c3b1e574010a0de6 135 Gene3D G3DSA:3.40.50.2300 1 132 2.4E-34 T 29-03-2018 Y880_RS28700 cc243581fe7fcac6c3b1e574010a0de6 135 SUPERFAMILY SSF52172 5 126 1.85E-35 T 29-03-2018 IPR011006 CheY-like superfamily Y880_RS28700 cc243581fe7fcac6c3b1e574010a0de6 135 Pfam PF00072 Response regulator receiver domain 10 121 3.2E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y880_RS21590 475d9578a06e5bcf8996a6ac2dfd1aa8 157 SUPERFAMILY SSF51182 22 125 1.72E-11 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS21590 475d9578a06e5bcf8996a6ac2dfd1aa8 157 Gene3D G3DSA:2.60.120.10 18 145 1.8E-14 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS21590 475d9578a06e5bcf8996a6ac2dfd1aa8 157 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 7 138 1.3E-43 T 29-03-2018 IPR027565 Cupin fold metalloprotein, WbuC family Y880_RS29600 ba995d2ecf682c50e1c24b0e58bd431b 149 Gene3D G3DSA:1.10.10.410 92 148 4.0E-16 T 29-03-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Y880_RS29600 ba995d2ecf682c50e1c24b0e58bd431b 149 SUPERFAMILY SSF89095 4 148 1.26E-35 T 29-03-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 Y880_RS29600 ba995d2ecf682c50e1c24b0e58bd431b 149 Gene3D G3DSA:1.10.1510.10 1 91 4.3E-24 T 29-03-2018 Y880_RS29600 ba995d2ecf682c50e1c24b0e58bd431b 149 Pfam PF09424 Yqey-like protein 5 147 3.8E-49 T 29-03-2018 IPR019004 Uncharacterised domain YOR215C, mitochondrial Y880_RS05670 988e1490f8c4a04bd74ba9d2ca304236 115 TIGRFAM TIGR02508 type_III_yscG: type III secretion protein, YscG family 1 114 2.0E-42 T 29-03-2018 IPR013348 Type III secretion system YscG GO:0009405 Y880_RS05670 988e1490f8c4a04bd74ba9d2ca304236 115 Pfam PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) 1 115 8.2E-57 T 29-03-2018 IPR013348 Type III secretion system YscG GO:0009405 Y880_RS20900 a8863614df18d7047847df6119188e72 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 124 4.5E-6 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y880_RS20900 a8863614df18d7047847df6119188e72 141 Gene3D G3DSA:3.10.180.10 5 135 4.0E-23 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS20900 a8863614df18d7047847df6119188e72 141 SUPERFAMILY SSF54593 5 134 9.63E-25 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y880_RS15315 17b341176dee7ffa3ef1cc41de27c208 112 Pfam PF08888 HopJ type III effector protein 4 108 2.7E-38 T 29-03-2018 IPR014984 HopJ type III effector protein Y880_RS15315 17b341176dee7ffa3ef1cc41de27c208 112 Gene3D G3DSA:3.20.160.10 2 109 2.6E-40 T 29-03-2018 Y880_RS06280 52f4fd3f8b2e3b368d67d25a4dce266a 104 Gene3D G3DSA:3.30.1050.10 2 104 3.2E-30 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS06280 52f4fd3f8b2e3b368d67d25a4dce266a 104 SUPERFAMILY SSF55718 2 102 1.82E-28 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS06280 52f4fd3f8b2e3b368d67d25a4dce266a 104 Pfam PF02036 SCP-2 sterol transfer family 16 102 3.2E-21 T 29-03-2018 IPR003033 SCP2 sterol-binding domain Y880_RS14215 c8656c15a05ea757b2ac3836d695538e 453 SUPERFAMILY SSF53474 88 236 1.11E-20 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14215 c8656c15a05ea757b2ac3836d695538e 453 SUPERFAMILY SSF53474 264 419 1.11E-20 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS14215 c8656c15a05ea757b2ac3836d695538e 453 Gene3D G3DSA:3.40.50.1820 75 450 1.5E-20 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold Y880_RS03680 537fe15e7803afacb69f1a2f4494f70b 141 Gene3D G3DSA:3.30.70.1060 1 118 1.2E-40 T 29-03-2018 Y880_RS03680 537fe15e7803afacb69f1a2f4494f70b 141 Pfam PF03795 YCII-related domain 1 114 2.9E-31 T 29-03-2018 IPR005545 YCII-related Y880_RS03680 537fe15e7803afacb69f1a2f4494f70b 141 SUPERFAMILY SSF54909 1 118 4.83E-37 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS25525 7fd9d4f70ab6d5ab30f7581c87c7af91 516 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 1 493 1.1E-168 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Y880_RS25525 7fd9d4f70ab6d5ab30f7581c87c7af91 516 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 39 494 6.3E-148 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Y880_RS27095 446aac22592dbf77eedf967322bdb414 399 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 49 347 6.5E-93 T 29-03-2018 IPR018683 Domain of unknown function DUF2169 Y880_RS21760 70d8fedd7ee9a62215c581894f341bf5 424 Pfam PF05707 Zonular occludens toxin (Zot) 2 213 9.4E-68 T 29-03-2018 IPR008900 Zona occludens toxin Y880_RS21760 70d8fedd7ee9a62215c581894f341bf5 424 Gene3D G3DSA:3.40.50.300 3 213 4.5E-8 T 29-03-2018 Y880_RS19975 9d74211b1aa4e2eaa5e99c99259fbce8 426 Pfam PF01757 Acyltransferase family 12 397 2.6E-30 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 Y880_RS17000 2a01c85ab3bbb1971361950b3c2ce317 418 PIRSF PIRSF006060 10 418 4.4E-11 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS17000 2a01c85ab3bbb1971361950b3c2ce317 418 Pfam PF03222 Tryptophan/tyrosine permease family 29 382 7.8E-29 T 29-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 Y880_RS07570 77b9ef47753ea1d84604a67e317fcaf3 468 PIRSF PIRSF006060 8 467 3.8E-66 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS07570 77b9ef47753ea1d84604a67e317fcaf3 468 Pfam PF00324 Amino acid permease 26 433 5.4E-89 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS07570 77b9ef47753ea1d84604a67e317fcaf3 468 ProSitePatterns PS00218 Amino acid permeases signature. 50 80 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y880_RS24430 03d4bc80449dda9f9db34e748759f23d 210 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 65 184 2.6E-22 T 29-03-2018 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Y880_RS18390 d9b95b62756574e86ea4014f873e6184 276 Gene3D G3DSA:3.40.390.10 41 251 3.2E-24 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 Y880_RS18390 d9b95b62756574e86ea4014f873e6184 276 Pfam PF06167 Glucose-regulated metallo-peptidase M90 5 249 5.4E-88 T 29-03-2018 IPR010384 MtfA family Y880_RS18390 d9b95b62756574e86ea4014f873e6184 276 SUPERFAMILY SSF55486 39 251 5.05E-38 T 29-03-2018 Y880_RS20780 a1850f55ea833a93d3e8d7c38be761f1 236 Pfam PF04402 Protein of unknown function (DUF541) 32 227 1.6E-26 T 29-03-2018 IPR007497 Protein of unknown function DUF541 Y880_RS17875 7cf687208436c0b6a802940b70fce00b 56 Pfam PF10617 Protein of unknown function (DUF2474) 17 52 3.5E-17 T 29-03-2018 IPR018895 Protein of unknown function DUF2474 Y880_RS25205 41b652bf917f25506e728c3e8fb6e9a9 182 Gene3D G3DSA:3.30.530.20 12 182 8.2E-6 T 29-03-2018 IPR023393 START-like domain Y880_RS12920 44a86d43502ee9358056b7894be07ffc 177 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 22 163 2.2E-50 T 29-03-2018 IPR018639 Domain of unknown function DUF2062 Y880_RS12310 79be35d0603771bc2ffbdaf24609f353 119 Pfam PF06127 Protein of unknown function (DUF962) 11 85 1.4E-7 T 29-03-2018 IPR009305 Protein of unknown function DUF962 Y880_RS19340 6258a32020db5f507d517254e47bdc1c 61 Gene3D G3DSA:3.90.1150.10 5 59 5.1E-4 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 Y880_RS07885 2eebbeef8b4c623c93a9e30248787b99 149 Gene3D G3DSA:3.30.240.20 78 147 1.1E-15 T 29-03-2018 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Y880_RS07885 2eebbeef8b4c623c93a9e30248787b99 149 Pfam PF04239 Protein of unknown function (DUF421) 85 146 1.4E-10 T 29-03-2018 IPR007353 Protein of unknown function DUF421 Y880_RS26055 41c5a7c0ab6581ca77894934407add6f 186 Gene3D G3DSA:3.40.630.30 22 183 3.8E-16 T 29-03-2018 Y880_RS26055 41c5a7c0ab6581ca77894934407add6f 186 SUPERFAMILY SSF55729 28 169 1.44E-17 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS26235 061a84ba26354370d111ef6d5685f608 449 Pfam PF00324 Amino acid permease 32 407 2.9E-33 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS26235 061a84ba26354370d111ef6d5685f608 449 PIRSF PIRSF006060 1 449 1.3E-67 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS02390 93885bd433c6496b785aecf8bd467faa 237 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 236 3.5E-73 T 29-03-2018 IPR010239 Conserved hypothetical protein CHP02001 Y880_RS02390 93885bd433c6496b785aecf8bd467faa 237 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 55 224 6.9E-14 T 29-03-2018 IPR010239 Conserved hypothetical protein CHP02001 Y880_RS19885 d3ff1cab7b2b5314bb15b4d89c67f5f6 523 Pfam PF13559 Domain of unknown function (DUF4129) 442 514 1.1E-5 T 29-03-2018 IPR025403 Domain of unknown function DUF4129 Y880_RS16800 5920261e332a462fef9b5019487790ac 688 SUPERFAMILY SSF117892 60 208 2.75E-9 T 29-03-2018 IPR001107 Band 7 domain Y880_RS22035 f0dda712c289d3ebfcb59949be44ad94 170 Pfam PF13590 Domain of unknown function (DUF4136) 37 165 1.2E-10 T 29-03-2018 IPR025411 Domain of unknown function DUF4136 Y880_RS00375 08e9e667d1a94e1de8e66971c375192a 156 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 12 147 1.2E-17 T 29-03-2018 IPR009936 Protein of unknown function DUF1468 Y880_RS05925 085d67ee6e1b19f09bdbedd3dbda1db4 179 Pfam PF05618 Putative ATP-dependant zinc protease 27 168 2.9E-51 T 29-03-2018 Y880_RS05925 085d67ee6e1b19f09bdbedd3dbda1db4 179 SUPERFAMILY SSF50630 27 165 6.35E-40 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS05925 085d67ee6e1b19f09bdbedd3dbda1db4 179 Gene3D G3DSA:2.40.70.10 24 159 1.0E-41 T 29-03-2018 IPR021109 Aspartic peptidase domain Y880_RS28845 d04775baed4ec6d0285754e4e4ae2b20 492 Pfam PF03929 PepSY-associated TM region 8 277 6.4E-11 T 29-03-2018 IPR005625 PepSY-associated TM protein Y880_RS24770 8e98dc022c2d4c117a5d9ec34fde1290 139 Pfam PF03748 Flagellar basal body-associated protein FliL 37 138 3.8E-21 T 29-03-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Y880_RS24300 69ff754d69502d5270bf0570f0198688 78 Gene3D G3DSA:1.10.150.20 9 77 1.3E-5 T 29-03-2018 Y880_RS22060 61335bac7a38688e5aec3bf526e2070b 297 Pfam PF04228 Putative neutral zinc metallopeptidase 1 292 2.1E-136 T 29-03-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative Y880_RS13760 d4dd9686c5cdbc29cccedd02b5bb20bb 346 Pfam PF00953 Glycosyl transferase family 4 77 233 2.7E-30 T 29-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 Y880_RS26875 ac88d47a37b79db70646384c0b112013 142 Gene3D G3DSA:2.60.120.10 7 139 2.4E-10 T 29-03-2018 IPR014710 RmlC-like jelly roll fold Y880_RS26875 ac88d47a37b79db70646384c0b112013 142 SUPERFAMILY SSF51182 42 132 1.67E-11 T 29-03-2018 IPR011051 RmlC-like cupin domain Y880_RS26410 0f65fe8c7a3b5827efca5691e74c80b5 674 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 16 668 2.4E-227 T 29-03-2018 IPR011853 TRAP transporter, 4TM/12TM fusion protein Y880_RS26410 0f65fe8c7a3b5827efca5691e74c80b5 674 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 112 592 7.2E-88 T 29-03-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y880_RS00805 2386b51311419c897257d6f022f89d77 266 SUPERFAMILY SSF53448 81 153 8.06E-8 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS00805 2386b51311419c897257d6f022f89d77 266 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 77 109 2.5E-4 T 29-03-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif Y880_RS19735 172336d328560322caeb0920afb71a7e 489 Pfam PF01384 Phosphate transporter family 30 478 1.7E-85 T 29-03-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Y880_RS21400 7ad5ab9f788eb6463d028f0f4079aa56 84 Pfam PF04325 Protein of unknown function (DUF465) 29 75 1.3E-12 T 29-03-2018 IPR007420 Protein of unknown function DUF465 Y880_RS17650 db44a7264eee5b40ef0b9c0322243347 424 Pfam PF00999 Sodium/hydrogen exchanger family 8 409 1.2E-74 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y880_RS25145 528059135d44537a2fb92ac7dc650388 63 Pfam PF13617 YnbE-like lipoprotein 7 61 2.1E-26 T 29-03-2018 IPR025985 YnbE-like lipoprotein Y880_RS25145 528059135d44537a2fb92ac7dc650388 63 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 23 63 9.0E-17 T 29-03-2018 Y880_RS27560 b10a8c19f30b461e7f12d56eb9728229 452 Pfam PF03573 outer membrane porin, OprD family 29 450 9.0E-140 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 Y880_RS27560 b10a8c19f30b461e7f12d56eb9728229 452 Gene3D G3DSA:2.40.160.10 2 452 8.4E-92 T 29-03-2018 Y880_RS13215 647f0be76057b411ed207e60bbe866f0 126 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 14 123 2.1E-19 T 29-03-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III Y880_RS07275 f905dea881ee33c158ecdcd1b5d4da90 279 SUPERFAMILY SSF53448 2 270 5.18E-64 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS07275 f905dea881ee33c158ecdcd1b5d4da90 279 Pfam PF00483 Nucleotidyl transferase 9 267 4.1E-31 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y880_RS07275 f905dea881ee33c158ecdcd1b5d4da90 279 Gene3D G3DSA:3.90.550.10 3 275 8.3E-56 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y880_RS07275 f905dea881ee33c158ecdcd1b5d4da90 279 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 264 1.9E-122 T 29-03-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 Y880_RS21840 46cc1dfff27d23684420f3bac5776782 40 Gene3D G3DSA:1.10.443.10 1 27 6.7E-4 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y880_RS21840 46cc1dfff27d23684420f3bac5776782 40 SUPERFAMILY SSF56349 1 27 5.59E-5 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y880_RS05490 f3b458e869e09fb4710594a7e17b7de8 63 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 56 1.0E-11 T 29-03-2018 IPR027379 Cardiolipin synthase N-terminal Y880_RS09210 fde5364e10fd0409bc45d1e4459e08cd 261 SUPERFAMILY SSF56219 3 255 5.23E-9 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS09210 fde5364e10fd0409bc45d1e4459e08cd 261 Gene3D G3DSA:3.60.10.10 4 260 8.9E-7 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y880_RS14510 7d5fda63f503324cb56f672da8275eba 183 Pfam PF11745 Protein of unknown function (DUF3304) 28 154 4.3E-38 T 29-03-2018 IPR021733 Protein of unknown function DUF3304 Y880_RS14650 31e4fb52c23b06a7ee3bb9398dad7ac5 277 SUPERFAMILY SSF161098 70 268 1.44E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS14650 31e4fb52c23b06a7ee3bb9398dad7ac5 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 274 4.3E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS14650 31e4fb52c23b06a7ee3bb9398dad7ac5 277 Gene3D G3DSA:1.10.3720.10 63 277 2.4E-20 T 29-03-2018 Y880_RS17185 25764d6f2b2403b43aa9c0f5a8bacfeb 195 Gene3D G3DSA:1.10.10.690 51 194 3.8E-33 T 29-03-2018 Y880_RS17185 25764d6f2b2403b43aa9c0f5a8bacfeb 195 SUPERFAMILY SSF140804 73 184 2.22E-27 T 29-03-2018 IPR027405 YidB-like Y880_RS17185 25764d6f2b2403b43aa9c0f5a8bacfeb 195 Pfam PF06078 Bacterial protein of unknown function (DUF937) 37 177 8.4E-19 T 29-03-2018 IPR009282 Protein of unknown function DUF937 Y880_RS14080 6cbf417298afd318b550172ee78fa0ad 381 Pfam PF02405 Permease MlaE 165 374 8.2E-67 T 29-03-2018 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 Y880_RS14080 6cbf417298afd318b550172ee78fa0ad 381 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 140 376 1.7E-67 T 29-03-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Y880_RS11860 c3b78cb10f1ffd7df66643a11ff61b7b 249 Pfam PF14348 Domain of unknown function (DUF4400) 51 246 4.4E-72 T 29-03-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y880_RS11860 c3b78cb10f1ffd7df66643a11ff61b7b 249 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 15 249 7.0E-99 T 29-03-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y880_RS01480 e4ed48786fea3e16b05a3de8c39e40c8 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 4 179 1.2E-61 T 29-03-2018 IPR018636 Protein of unknown function DUF2058 Y880_RS23590 e6eb37eb048cc242583a9c012de48d4b 373 SUPERFAMILY SSF53756 4 363 3.38E-60 T 29-03-2018 Y880_RS23590 e6eb37eb048cc242583a9c012de48d4b 373 Pfam PF00534 Glycosyl transferases group 1 184 348 5.0E-32 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 Y880_RS23590 e6eb37eb048cc242583a9c012de48d4b 373 Gene3D G3DSA:3.40.50.2000 154 368 3.5E-35 T 29-03-2018 Y880_RS04790 d4b8a3af608a783d401b19832b7d3c21 203 Gene3D G3DSA:1.10.760.10 36 203 5.9E-27 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04790 d4b8a3af608a783d401b19832b7d3c21 203 SUPERFAMILY SSF46626 16 196 2.89E-30 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y880_RS04790 d4b8a3af608a783d401b19832b7d3c21 203 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 4 180 2.4E-83 T 29-03-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y880_RS04790 d4b8a3af608a783d401b19832b7d3c21 203 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 4 179 4.6E-86 T 29-03-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y880_RS22040 acc69feb8deb022ec8329122c4db7719 149 Pfam PF14248 Domain of unknown function (DUF4345) 4 120 1.8E-12 T 29-03-2018 IPR025597 Protein of unknown function DUF4345 Y880_RS15835 e079fd0b4b1ab007c83369a0b52242ea 490 Gene3D G3DSA:2.40.160.20 38 417 0.0038 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 Y880_RS15835 e079fd0b4b1ab007c83369a0b52242ea 490 Pfam PF13372 Alginate export 39 485 2.7E-117 T 29-03-2018 IPR025388 Alginate export domain Y880_RS11900 e934bd081bf193a9d041b92e5548a10f 147 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 17 143 6.0E-52 T 29-03-2018 IPR022262 Lipoprotein, putative Y880_RS11770 c75a594e43479a6e02356cd144ab09d8 117 Pfam PF11284 Protein of unknown function (DUF3085) 22 111 3.3E-33 T 29-03-2018 IPR021436 Protein of unknown function DUF3085 Y880_RS25695 f44971580c6d362425835051e79360cf 186 Pfam PF03729 Short repeat of unknown function (DUF308) 19 86 1.2E-11 T 29-03-2018 IPR005325 Protein of unknown function DUF308, membrane Y880_RS25695 f44971580c6d362425835051e79360cf 186 Pfam PF03729 Short repeat of unknown function (DUF308) 133 181 1.8E-6 T 29-03-2018 IPR005325 Protein of unknown function DUF308, membrane Y880_RS25695 f44971580c6d362425835051e79360cf 186 Pfam PF03729 Short repeat of unknown function (DUF308) 76 146 6.1E-15 T 29-03-2018 IPR005325 Protein of unknown function DUF308, membrane Y880_RS08085 6d629ce4b25c4daf1de4a3888c38cfc4 156 Gene3D G3DSA:1.20.120.520 1 146 4.0E-21 T 29-03-2018 Y880_RS08085 6d629ce4b25c4daf1de4a3888c38cfc4 156 Pfam PF01814 Hemerythrin HHE cation binding domain 3 124 1.6E-17 T 29-03-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Y880_RS08545 36af9cbbfcbd5a6a0191ceb432583087 355 Pfam PF01757 Acyltransferase family 7 322 5.1E-26 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 Y880_RS05640 851c11852941481cda6b3bbf332e0203 276 Pfam PF16806 Antiactivator protein ExsD 42 274 6.4E-101 T 29-03-2018 IPR031835 Antiactivator protein ExsD Y880_RS18765 c0948c004a24f79fdb496a89fb80b555 169 Pfam PF07681 DoxX 25 110 2.7E-20 T 29-03-2018 IPR032808 DoxX family Y880_RS21230 b9cd754e26e24e24eeff6f561d4b6c3f 618 Pfam PF13387 Domain of unknown function (DUF4105) 119 291 1.2E-60 T 29-03-2018 IPR025178 Domain of unknown function DUF4105 Y880_RS07875 d29c461da004688c6af1a6dfe5fe5931 190 Pfam PF13628 Domain of unknown function (DUF4142) 50 183 1.6E-40 T 29-03-2018 IPR025419 Domain of unknown function DUF4142 Y880_RS07875 d29c461da004688c6af1a6dfe5fe5931 190 Gene3D G3DSA:1.20.1260.10 38 186 5.0E-26 T 29-03-2018 IPR012347 Ferritin-related Y880_RS11335 e4c1d6df9ca7667bc10c2cd011dbaaca 299 Pfam PF04261 Dyp-type peroxidase family 39 287 3.6E-35 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 Y880_RS11335 e4c1d6df9ca7667bc10c2cd011dbaaca 299 SUPERFAMILY SSF54909 7 290 8.22E-75 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS11335 e4c1d6df9ca7667bc10c2cd011dbaaca 299 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 11 288 1.4E-71 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 Y880_RS20050 c319c1a95ecd54434c9dcbe4e1921677 190 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 184 1.9E-34 T 29-03-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 Y880_RS20050 c319c1a95ecd54434c9dcbe4e1921677 190 PIRSF PIRSF011489 1 190 4.5E-82 T 29-03-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 Y880_RS06945 bcdf866463d980a5d26ede08572b770f 191 Pfam PF04973 Nicotinamide mononucleotide transporter 3 181 9.5E-56 T 29-03-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 Y880_RS06945 bcdf866463d980a5d26ede08572b770f 191 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 3 181 1.3E-30 T 29-03-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 Y880_RS24280 e4cdcf0619649f97c20d4f4dd01b4e92 86 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 11 84 2.8E-27 T 29-03-2018 IPR018680 Protein of unknown function DUF2164 Y880_RS11885 89f503c3c07b6a12e0b6473e9e8b2985 242 Pfam PF11444 Protein of unknown function (DUF2895) 6 206 9.3E-94 T 29-03-2018 IPR021548 Protein of unknown function DUF2895 Y880_RS11885 89f503c3c07b6a12e0b6473e9e8b2985 242 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 4 207 6.6E-100 T 29-03-2018 IPR021548 Protein of unknown function DUF2895 Y880_RS04295 242e57b1adef8238c4f3fc664d1c8251 135 Pfam PF10975 Protein of unknown function (DUF2802) 64 130 4.3E-23 T 29-03-2018 IPR021244 Protein of unknown function DUF2802 Y880_RS04295 242e57b1adef8238c4f3fc664d1c8251 135 Gene3D G3DSA:1.20.5.170 16 94 1.9E-5 T 29-03-2018 Y880_RS14990 d5968bc52707319b0307afbbf34cdb30 294 Pfam PF06007 Phosphonate metabolism protein PhnJ 14 284 4.7E-145 T 29-03-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y880_RS14990 d5968bc52707319b0307afbbf34cdb30 294 PIRSF PIRSF011468 5 294 1.6E-158 T 29-03-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y880_RS20650 818fc5c5e602fe7141efa0eb8c3e5417 149 Gene3D G3DSA:1.25.40.10 1 128 7.0E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS14265 18626922cc4a0cf763102c738c70b1d5 183 Gene3D G3DSA:3.40.630.30 6 182 2.4E-25 T 29-03-2018 Y880_RS14265 18626922cc4a0cf763102c738c70b1d5 183 SUPERFAMILY SSF55729 5 174 4.38E-37 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase Y880_RS14265 18626922cc4a0cf763102c738c70b1d5 183 Pfam PF13302 Acetyltransferase (GNAT) domain 20 150 6.6E-18 T 29-03-2018 IPR000182 GNAT domain GO:0008080 Y880_RS09255 8fabd194584810ebd44487d44b8f21b7 80 Pfam PF07867 Protein of unknown function (DUF1654) 12 78 7.0E-31 T 29-03-2018 IPR012449 Bacteriophage F116, Orf28 Y880_RS08875 7cb68b8b3fcef6c4441aa62b054f5779 205 Pfam PF01810 LysE type translocator 17 192 2.0E-17 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS14210 72b1692138093c6e467f4e807a46aeaf 73 Pfam PF09834 Predicted membrane protein (DUF2061) 1 52 7.7E-22 T 29-03-2018 IPR018638 Domain of unknown function DUF2061, membrane Y880_RS28045 9e24c29ec88ddfa43963f5ef4e5e523a 60 Pfam PF10055 Uncharacterized small protein (DUF2292) 17 52 1.2E-17 T 29-03-2018 IPR018743 Protein of unknown function DUF2292 Y880_RS15225 caff4a2d21f8b045f92dcef3bc61fb83 585 Pfam PF06980 Protein of unknown function (DUF1302) 31 585 1.1E-221 T 29-03-2018 IPR010727 Protein of unknown function DUF1302 Y880_RS21765 7cc1b59ec83b2ba8c1e7c498380728a8 118 Pfam PF10734 Protein of unknown function (DUF2523) 37 111 3.5E-9 T 29-03-2018 IPR019670 Protein of unkown function DUF2523 Y880_RS08250 bcf1504eaf0ad8ce49e400b0390d72a4 176 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 20 159 1.6E-16 T 29-03-2018 IPR009936 Protein of unknown function DUF1468 Y880_RS17450 309adfeec38d98bf02d8eb061c9ce23c 156 Gene3D G3DSA:3.30.530.20 3 156 9.3E-13 T 29-03-2018 IPR023393 START-like domain Y880_RS17450 309adfeec38d98bf02d8eb061c9ce23c 156 SUPERFAMILY SSF55961 1 152 2.27E-8 T 29-03-2018 Y880_RS08055 269e672960f5235c91706f812f6a89d4 121 Pfam PF12021 Protein of unknown function (DUF3509) 10 78 6.5E-14 T 29-03-2018 IPR021898 Protein of unknown function DUF3509 Y880_RS00965 b81de985852287fc34125a6f265852ba 207 TIGRFAM TIGR03398 plc_access_R: phospholipase C accessory protein PlcR 66 205 4.1E-61 T 29-03-2018 IPR017769 Phospholipase C accessory protein PlcR Y880_RS28015 c9e20de3b9edbb5ccf93e95602091023 126 Pfam PF01925 Sulfite exporter TauE/SafE 8 119 1.8E-14 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y880_RS22885 da40b9755dcc6e15498110527127b2ac 138 Pfam PF07769 psiF repeat 65 97 6.6E-20 T 29-03-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Y880_RS22885 da40b9755dcc6e15498110527127b2ac 138 Pfam PF07769 psiF repeat 23 55 1.1E-19 T 29-03-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Y880_RS22885 da40b9755dcc6e15498110527127b2ac 138 Pfam PF07769 psiF repeat 105 137 7.8E-20 T 29-03-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Y880_RS28315 94d1a3f574dc2749f964d5b4b543279d 155 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 154 1.1E-59 T 29-03-2018 IPR018729 Protein of unknown function DUF2269, transmembrane Y880_RS00855 5c2337951ab76192ccb4547b47c1687e 450 SUPERFAMILY SSF56024 34 146 2.69E-8 T 29-03-2018 Y880_RS00855 5c2337951ab76192ccb4547b47c1687e 450 Pfam PF13091 PLD-like domain 40 135 5.3E-7 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y880_RS00855 5c2337951ab76192ccb4547b47c1687e 450 Gene3D G3DSA:3.30.870.10 12 155 8.5E-7 T 29-03-2018 Y880_RS20755 4322e80907073653153dd599209043b2 212 Gene3D G3DSA:3.90.1720.10 29 196 3.4E-12 T 29-03-2018 Y880_RS20755 4322e80907073653153dd599209043b2 212 Pfam PF06672 Protein of unknown function (DUF1175) 21 210 1.9E-77 T 29-03-2018 IPR009558 Protein of unknown function DUF1175 Y880_RS24855 a2b8b89f9f2892253cb23d5ee85253a6 252 Pfam PF03741 Integral membrane protein TerC family 14 203 1.7E-50 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y880_RS02645 61c5b8f71cba475847f49cdfd769e298 184 SMART SM01040 17 131 1.8E-14 T 29-03-2018 IPR003497 BRO N-terminal domain Y880_RS18310 97f44123089d6ace3dc25523fb9db5da 236 Pfam PF04172 LrgB-like family 21 233 1.3E-72 T 29-03-2018 IPR007300 CidB/LrgB family Y880_RS15035 d60dbe217af3e7387dc986243890943e 121 Pfam PF10861 Protein of Unknown function (DUF2784) 4 111 9.6E-41 T 29-03-2018 IPR021218 Protein of unknown function DUF2784 Y880_RS02415 92953817032668e99bde63c9f4646edf 207 Gene3D G3DSA:3.90.70.10 35 201 2.3E-5 T 29-03-2018 Y880_RS14200 98120d9a164655b78d9bc25d2e1ddea7 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 1.7E-33 T 29-03-2018 IPR007436 Protein of unknown function DUF485 Y880_RS12370 3fdfa9bc9e087988d2e585802ff83331 171 Pfam PF05232 Chlorhexidine efflux transporter 25 88 9.3E-25 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter Y880_RS12370 3fdfa9bc9e087988d2e585802ff83331 171 Pfam PF05232 Chlorhexidine efflux transporter 93 156 9.9E-24 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter Y880_RS16505 eca3aaf4f60224510f9df6406d2f828b 615 Pfam PF09822 ABC-type uncharacterized transport system 33 300 4.5E-69 T 29-03-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Y880_RS16505 eca3aaf4f60224510f9df6406d2f828b 615 Gene3D G3DSA:3.40.50.880 174 390 1.0E-4 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS10070 55d317e9b1fe41f0740cea8c435d8cd5 211 Pfam PF01066 CDP-alcohol phosphatidyltransferase 28 96 9.9E-10 T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y880_RS27125 e6817e76dac9400d559da917ba70fecd 523 Pfam PF00916 Sulfate permease family 16 386 5.9E-63 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y880_RS18760 acb9432348542e8bc3c758f6638223bc 209 Pfam PF01794 Ferric reductase like transmembrane component 52 161 3.3E-7 T 29-03-2018 IPR013130 Ferric reductase transmembrane component-like domain Y880_RS29845 16240742b9fca92f0a211f1af4bc7ec3 68 Pfam PF05489 Phage Tail Protein X 4 61 7.0E-26 T 29-03-2018 IPR008861 Phage Tail Protein X-like Y880_RS28245 4f135165b5b8132044a7209502a87a2d 464 Pfam PF00324 Amino acid permease 37 431 2.7E-35 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 Y880_RS28245 4f135165b5b8132044a7209502a87a2d 464 PIRSF PIRSF006060 17 453 9.8E-64 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 Y880_RS14895 102ccf765410a0a864391cc3f28167b2 172 Pfam PF02293 AmiS/UreI family transporter 2 168 2.2E-56 T 29-03-2018 IPR003211 AmiS/UreI transporter GO:0006810|GO:0016020 Y880_RS08950 e39b14b53d42cbd94daaba3050875b43 450 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 15 450 3.7E-162 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y880_RS08950 e39b14b53d42cbd94daaba3050875b43 450 Pfam PF02447 GntP family permease 10 449 3.0E-184 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y880_RS08950 e39b14b53d42cbd94daaba3050875b43 450 PIRSF PIRSF002746 5 450 3.8E-161 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y880_RS01145 4e45b86e8b7d862e94210634f9033e0c 731 Pfam PF04632 Fusaric acid resistance protein family 40 724 1.1E-209 T 29-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 Y880_RS26155 f46ab47ac7bf29bf4033db4061a33638 96 Pfam PF11191 Protein of unknown function (DUF2782) 22 96 7.4E-24 T 29-03-2018 IPR021357 Protein of unknown function DUF2782 Y880_RS11670 493ce96e79c6d2c59091cf41b4f4ba72 106 Pfam PF11747 Killing trait 11 78 1.3E-28 T 29-03-2018 IPR021070 Killing trait, RebB Y880_RS22150 10133a69f441ffc2c4a179aa206b2f2b 293 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 42 272 2.5E-57 T 29-03-2018 IPR018713 Domain of unknown function DUF2236 Y880_RS19750 ee33b31a1e88964ded31b6a01fcd1c45 160 Pfam PF01478 Type IV leader peptidase family 5 109 5.1E-9 T 29-03-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Y880_RS21300 612e237513cae193cea2a105720df511 493 Pfam PF02321 Outer membrane efflux protein 294 480 4.7E-23 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS21300 612e237513cae193cea2a105720df511 493 Pfam PF02321 Outer membrane efflux protein 51 270 3.2E-18 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Y880_RS21300 612e237513cae193cea2a105720df511 493 Gene3D G3DSA:1.20.1600.10 39 490 2.5E-75 T 29-03-2018 Y880_RS21300 612e237513cae193cea2a105720df511 493 SUPERFAMILY SSF56954 4 102 1.96E-64 T 29-03-2018 Y880_RS21300 612e237513cae193cea2a105720df511 493 SUPERFAMILY SSF56954 131 484 1.96E-64 T 29-03-2018 Y880_RS07355 82d7fd30e52ff67a532a36b5618f2cfd 252 Pfam PF03591 AzlC protein 36 173 3.4E-36 T 29-03-2018 IPR011606 Branched-chain amino acid transport, permease Y880_RS21960 6e5d15b490cdf4b8460e6e850678e86a 150 Pfam PF13511 Domain of unknown function (DUF4124) 10 67 1.6E-15 T 29-03-2018 IPR025392 Domain of unknown function DUF4124 Y880_RS06920 d2c932155b068fe21d9038a617ab1ed3 226 Pfam PF03412 Peptidase C39 family 47 178 6.3E-21 T 29-03-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Y880_RS06920 d2c932155b068fe21d9038a617ab1ed3 226 Gene3D G3DSA:3.90.70.10 46 184 4.0E-33 T 29-03-2018 Y880_RS01320 c23de7c7f8aa598807d0c45ed5566d3e 176 Gene3D G3DSA:1.10.10.60 107 151 0.08 T 29-03-2018 Y880_RS16530 4a234ec2fbe5b26796683d5b5c898838 226 Pfam PF13852 Protein of unknown function (DUF4197) 25 223 3.5E-76 T 29-03-2018 IPR025245 Protein of unknown function DUF4197 Y880_RS04930 1e05b0a0a7df5f245ed74d485a36a262 84 Pfam PF03692 Putative zinc- or iron-chelating domain 2 59 6.0E-6 T 29-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y880_RS04180 2c1fc2fc5d678c0f2c9aeccffb71a57e 173 Pfam PF03748 Flagellar basal body-associated protein FliL 75 173 1.9E-23 T 29-03-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Y880_RS22610 907a906f2be7fea106cd06c8dd510630 453 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 416 3.3E-71 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y880_RS22610 907a906f2be7fea106cd06c8dd510630 453 Pfam PF01554 MatE 248 406 1.6E-13 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y880_RS22610 907a906f2be7fea106cd06c8dd510630 453 Pfam PF01554 MatE 23 181 3.8E-20 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y880_RS08295 ba60ce2c56b9c2dd823107ce8abc5aaa 165 Gene3D G3DSA:3.40.605.10 4 161 2.2E-19 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Y880_RS08295 ba60ce2c56b9c2dd823107ce8abc5aaa 165 SUPERFAMILY SSF53720 22 157 1.44E-22 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Y880_RS08295 ba60ce2c56b9c2dd823107ce8abc5aaa 165 Pfam PF00171 Aldehyde dehydrogenase family 35 122 4.1E-12 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Y880_RS08245 21ed74a1812e6c9692326a4d033cbb06 496 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 10 429 9.2E-136 T 29-03-2018 IPR002823 Protein of unknown function DUF112, transmembrane Y880_RS21100 be5aef915d8e11748ad253c619a4b2e4 195 Pfam PF14341 PilX N-terminal 9 59 5.5E-10 T 29-03-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain Y880_RS22160 b7ccbfbfb60333acb3cc61bb9a8e1a26 97 Pfam PF11006 Protein of unknown function (DUF2845) 23 94 5.7E-18 T 29-03-2018 IPR021268 Protein of unknown function DUF2845 Y880_RS11865 1af3aa7df38d33c1823bbec8046f611b 123 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 18 109 2.7E-34 T 29-03-2018 IPR019110 Uncharacterised protein family, RAQPRD Y880_RS11865 1af3aa7df38d33c1823bbec8046f611b 123 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 33 107 3.0E-27 T 29-03-2018 IPR019110 Uncharacterised protein family, RAQPRD Y880_RS04175 ab0f222baba03dd95ca901e4384e9b99 427 Pfam PF02120 Flagellar hook-length control protein FliK 295 372 8.7E-23 T 29-03-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Y880_RS15765 62b7e4add30efee3d1f783f2f85cd2e7 73 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 49 1.1E-11 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y880_RS19915 b75a6586cb1a5eafa04382b37bfab29c 127 Gene3D G3DSA:1.25.40.10 12 116 1.6E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS10775 22cb7ce7ea13055bf1d3bebd569c7125 194 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 88 175 5.0E-6 T 29-03-2018 IPR034756 Type II secretion system (T2SS), protein M subtype b Y880_RS17430 c878c2dd55fc08e47ee1887394602fef 61 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 4 58 2.5E-7 T 29-03-2018 IPR018681 Protein of unknown function DUF2165, transmembrane Y880_RS14455 660867ee8116b9ec479372c7ad6dd6d3 196 Pfam PF07681 DoxX 23 108 1.1E-22 T 29-03-2018 IPR032808 DoxX family Y880_RS06510 0da3e81dd83fe5ac201f4aa3ed0f327d 265 Pfam PF12787 EcsC protein family 8 243 1.3E-39 T 29-03-2018 IPR024787 EcsC protein Y880_RS26015 24fc046b975bb0ce82c9759f85b0eb58 434 Pfam PF03600 Citrate transporter 13 377 3.5E-56 T 29-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Y880_RS26015 24fc046b975bb0ce82c9759f85b0eb58 434 TIGRFAM TIGR00784 citMHS: citrate transporter 1 429 7.2E-190 T 29-03-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 Y880_RS05615 6e54c5d13d0ded10892bf03254ebd54b 295 Pfam PF05844 YopD protein 1 295 3.1E-154 T 29-03-2018 IPR008898 YopD-like Y880_RS14585 e9476dd620fab16eaabab386c6f9d741 67 Pfam PF07869 Protein of unknown function (DUF1656) 6 59 2.0E-20 T 29-03-2018 IPR012451 Protein of unknown function DUF1656 Y880_RS16500 440081d704496736cd55506a50fd4398 326 Pfam PF14238 Domain of unknown function (DUF4340) 72 246 4.0E-19 T 29-03-2018 IPR025641 Domain of unknown function DUF4340 Y880_RS17745 1173b3683f2aeec912858dcf1bc72024 131 Pfam PF05488 PAAR motif 2 52 2.0E-15 T 29-03-2018 IPR008727 PAAR motif Y880_RS22395 d763a4e5e10e30e6c0cc42f1e613936b 188 Pfam PF06042 Nucleotidyltransferase 28 179 1.5E-50 T 29-03-2018 IPR009267 Putative nucleotidyltransferase Y880_RS00735 50d6766ab90b8b05b8e91a910183fd54 289 Gene3D G3DSA:2.20.25.10 245 287 0.002 T 29-03-2018 Y880_RS15265 55ced1e3d1293d241d09dd707bb4c7b2 259 SMART SM01007 24 203 7.5E-57 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS15265 55ced1e3d1293d241d09dd707bb4c7b2 259 Gene3D G3DSA:3.40.225.10 9 259 5.8E-73 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS15265 55ced1e3d1293d241d09dd707bb4c7b2 259 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 25 203 4.3E-43 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS15265 55ced1e3d1293d241d09dd707bb4c7b2 259 SUPERFAMILY SSF53639 19 220 3.14E-57 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal Y880_RS04785 ccf0fd169d0aa1460ba920d4023ea1d5 61 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 9 45 4.3E-9 T 29-03-2018 IPR008621 Cbb3-type cytochrome oxidase component Y880_RS19780 6bd25359afd04701cdfa66fd80d4f83a 294 Pfam PF00482 Type II secretion system (T2SS), protein F 127 253 4.1E-16 T 29-03-2018 IPR018076 Type II secretion system F domain Y880_RS14520 6ed13f4d7199b0b52297dc7ae580e0f7 271 Pfam PF13503 Domain of unknown function (DUF4123) 28 148 6.5E-18 T 29-03-2018 IPR025391 Domain of unknown function DUF4123 Y880_RS25770 36bbc81fd5b5a203ede101292a319d64 81 Pfam PF04226 Transglycosylase associated protein 33 80 3.1E-12 T 29-03-2018 IPR007341 Transglycosylase-associated protein GO:0016021 Y880_RS02015 91629e77563827d708fc51c94f9cb792 154 Pfam PF05425 Copper resistance protein D 48 150 3.3E-19 T 29-03-2018 IPR008457 Copper resistance protein D GO:0016021 Y880_RS14920 d3d8b49fa8017e395766ae99dce90309 417 TIGRFAM TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase 25 395 1.0E-27 T 29-03-2018 Y880_RS16210 8c3b2b9d59dc54166b47e1f8a2092265 73 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 15 68 2.0E-23 T 29-03-2018 IPR024530 Putative quorum-sensing-regulated virulence factor Y880_RS16210 8c3b2b9d59dc54166b47e1f8a2092265 73 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 3.5E-31 T 29-03-2018 IPR024530 Putative quorum-sensing-regulated virulence factor Y880_RS29640 2f979bffb9c9d75feb01564ea3123238 517 Pfam PF04293 SpoVR like protein 12 443 1.4E-177 T 29-03-2018 IPR007390 Sporulation stage V, protein R Y880_RS07465 75432ddd8871ebf44aca83efaa917ffe 357 Gene3D G3DSA:1.10.3720.10 7 351 1.9E-33 T 29-03-2018 Y880_RS07465 75432ddd8871ebf44aca83efaa917ffe 357 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 143 350 8.7E-34 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS07465 75432ddd8871ebf44aca83efaa917ffe 357 SUPERFAMILY SSF161098 120 334 4.58E-13 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Y880_RS26405 6777eebcd8dd6b0dd8027c61fc85a224 132 Pfam PF08905 Domain of unknown function (DUF1850) 21 105 1.5E-22 T 29-03-2018 IPR015001 Protein of unknown function DUF1850 Y880_RS13620 a14da35aa5927e6e11e5be5e0d37ef42 253 Pfam PF08241 Methyltransferase domain 47 143 1.4E-25 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Y880_RS13620 a14da35aa5927e6e11e5be5e0d37ef42 253 Gene3D G3DSA:3.40.50.150 23 250 7.7E-45 T 29-03-2018 Y880_RS13620 a14da35aa5927e6e11e5be5e0d37ef42 253 SUPERFAMILY SSF53335 9 240 2.17E-47 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y880_RS01980 5bea338b0b8865b0c64ebeeca5032ff6 206 Pfam PF03458 UPF0126 domain 91 163 1.2E-21 T 29-03-2018 IPR005115 Uncharacterised domain UPF0126 Y880_RS01980 5bea338b0b8865b0c64ebeeca5032ff6 206 Pfam PF03458 UPF0126 domain 5 79 6.1E-20 T 29-03-2018 IPR005115 Uncharacterised domain UPF0126 Y880_RS00150 17083115485ec04451fcae6341aa79bb 220 Gene3D G3DSA:1.20.120.330 19 160 3.2E-4 T 29-03-2018 Y880_RS09205 f4934573917483b88a3dec5cda69c2a5 291 Gene3D G3DSA:2.20.25.10 222 263 0.021 T 29-03-2018 Y880_RS11780 fd82874ca9004f3585763d8d4bc76b66 229 Pfam PF11679 Protein of unknown function (DUF3275) 14 222 1.0E-94 T 29-03-2018 IPR021693 Protein of unknown function DUF3275 Y880_RS12235 6b3104a55923c31461135cf023b7d039 83 Pfam PF11839 Alanine-zipper, major outer membrane lipoprotein 24 83 3.9E-11 T 29-03-2018 IPR021793 Major outer membrane lipoprotein Oprl Y880_RS11035 14e630cfd94c8a8d0fa51d907787af22 228 SUPERFAMILY SSF52317 1 227 1.01E-68 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS11035 14e630cfd94c8a8d0fa51d907787af22 228 Pfam PF01965 DJ-1/PfpI family 28 224 1.3E-13 T 29-03-2018 IPR002818 DJ-1/PfpI Y880_RS11035 14e630cfd94c8a8d0fa51d907787af22 228 Gene3D G3DSA:3.40.50.880 1 228 2.9E-52 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like Y880_RS00155 efd63c01eabdb14efe215298a86ea224 144 Pfam PF10722 Putative bacterial sensory transduction regulator 11 135 3.5E-17 T 29-03-2018 IPR019660 Putative sensory transduction regulator YbjN Y880_RS07410 99549a156a82df9a2199102c3b0776a2 98 SUPERFAMILY SSF54909 10 89 1.86E-13 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel Y880_RS07410 99549a156a82df9a2199102c3b0776a2 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 11 80 5.6E-13 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y880_RS07410 99549a156a82df9a2199102c3b0776a2 98 Gene3D G3DSA:3.30.70.100 5 96 1.4E-11 T 29-03-2018 Y880_RS12040 6f1661aa3c0389b4754f266b930485ae 79 SUPERFAMILY SSF53850 5 76 4.71E-6 T 29-03-2018 Y880_RS12040 6f1661aa3c0389b4754f266b930485ae 79 Gene3D G3DSA:3.40.190.10 1 49 2.0E-4 T 29-03-2018 Y880_RS14675 00b2033890afed40308bccaf9f7f9da5 151 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 144 5.0E-36 T 29-03-2018 IPR006750 Putative inner membrane exporter, YdcZ Y880_RS24635 a9d3ba6b7df4acab3a13383b93a73f83 422 Pfam PF01384 Phosphate transporter family 26 409 4.4E-113 T 29-03-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Y880_RS26020 3c053cdb9414d0702265aa08eee9fd66 254 Pfam PF03741 Integral membrane protein TerC family 14 204 4.2E-51 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y880_RS28750 74b1d3c5911b087b10beb25c2713bcfc 203 Pfam PF01810 LysE type translocator 14 199 1.6E-51 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS21110 b5f74af4777f1d7a73950582e00eb5ca 115 Pfam PF14481 Type 4 fimbrial biogenesis protein PilY2 1 115 1.3E-81 T 29-03-2018 IPR029497 Type 4 fimbrial biogenesis protein PilY2 Y880_RS29800 905ea0182c5d792e0688992c17f47d86 295 PIRSF PIRSF020481 1 295 1.9E-130 T 29-03-2018 IPR014507 Baseplate assembly protein J, predicted Y880_RS29800 905ea0182c5d792e0688992c17f47d86 295 Pfam PF04865 Baseplate J-like protein 111 252 1.8E-23 T 29-03-2018 IPR006949 Baseplate protein J-like Y880_RS07945 14a172047736140b84ada895cf2cfa37 55 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 32 52 1.2E-9 T 29-03-2018 IPR019626 Stress-induced protein, KGG, repeat Y880_RS07945 14a172047736140b84ada895cf2cfa37 55 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 4.8E-9 T 29-03-2018 IPR019626 Stress-induced protein, KGG, repeat Y880_RS14460 a10c6d78c5f7b9b678705d618cc08232 244 Pfam PF09836 Putative DNA-binding domain 6 90 1.1E-27 T 29-03-2018 IPR018640 Putative DNA-binding domain, bacteria Y880_RS12340 48e8a0155dcf53b5c8b422466a015229 317 Pfam PF01882 Protein of unknown function DUF58 213 258 6.0E-11 T 29-03-2018 IPR002881 Domain of unknown function DUF58 Y880_RS12475 6e5a3dc2bfd3e0fd485aba2b146a827b 119 Pfam PF14346 Domain of unknown function (DUF4398) 13 112 1.5E-23 T 29-03-2018 IPR025511 Domain of unknown function DUF4398 Y880_RS27475 84ea393946abf940601efaae5c8a43ba 126 Pfam PF09345 Domain of unknown function (DUF1987) 6 122 2.2E-39 T 29-03-2018 IPR018530 Domain of unknown function DUF1987 Y880_RS24920 09b02508b4446bef68a4bc20fbbd606d 358 Pfam PF06580 Histidine kinase 163 241 6.1E-23 T 29-03-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Y880_RS21565 70d51b58d47bcc95b17720f4e3257d25 195 Pfam PF03923 Uncharacterized lipoprotein 39 192 7.7E-12 T 29-03-2018 IPR005619 Uncharacterised protein family, YajG Y880_RS26195 ee77565f6a39785f7e053c08ac36c13f 262 Gene3D G3DSA:1.25.40.10 34 215 1.2E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Y880_RS00355 5768f8c5993e54302e08558a0d712daf 273 Pfam PF04294 VanW like protein 70 203 1.9E-33 T 29-03-2018 IPR007391 Vancomycin resistance VanW Y880_RS17060 46cc917438d6099dbdc2cd9eb8bd92d9 291 Pfam PF13557 Putative MetA-pathway of phenol degradation 61 287 5.6E-29 T 29-03-2018 IPR025737 MetA-pathway of phenol degradation, putative Y880_RS17130 09f2f75e54a80e869b589b96ce7c04c6 158 Pfam PF04314 Copper chaperone PCu(A)C 30 138 3.8E-38 T 29-03-2018 IPR007410 Copper chaperone PCuAC Y880_RS17130 09f2f75e54a80e869b589b96ce7c04c6 158 SUPERFAMILY SSF110087 1 146 4.32E-51 T 29-03-2018 IPR007410 Copper chaperone PCuAC Y880_RS07165 fde449868abc0f2894e1a21cdef1b356 474 Pfam PF02667 Short chain fatty acid transporter 14 458 5.6E-83 T 29-03-2018 IPR006160 Short chain fatty acid transporter AtoE Y880_RS09425 d35dac401a66d4f73dea2a4a1535a951 141 PIRSF PIRSF029509 1 141 4.8E-48 T 29-03-2018 IPR016923 Uncharacterised conserved protein UCP029509, membrane Y880_RS13545 92beee7600ae1b6dd88f7064a0bb8e05 235 Pfam PF11356 Type II secretion system protein C 36 164 5.3E-22 T 29-03-2018 IPR024961 Type II secretion system protein C, N-terminal Y880_RS27160 78f9ea2bc875a632bd82888f0d7b9e7f 69 Pfam PF11137 Protein of unknown function (DUF2909) 2 60 1.4E-20 T 29-03-2018 IPR021313 Protein of unknown function DUF2909 Y880_RS17845 973766db0196cd7742e214155540aac6 641 Pfam PF06980 Protein of unknown function (DUF1302) 31 641 5.4E-231 T 29-03-2018 IPR010727 Protein of unknown function DUF1302 Y880_RS18840 e0dee72019f52b7813f5d751f772c6cc 189 SUPERFAMILY SSF52096 34 186 1.79E-10 T 29-03-2018 IPR029045 ClpP/crotonase-like domain Y880_RS21260 7c0237e77f3f9980f9e1703fa8f8244b 270 Pfam PF10127 Predicted nucleotidyltransferase 13 260 4.6E-92 T 29-03-2018 IPR018775 Nucleotidyltransferase, predicted Y880_RS21260 7c0237e77f3f9980f9e1703fa8f8244b 270 Gene3D G3DSA:3.30.460.10 2 166 1.2E-5 T 29-03-2018 Y880_RS22700 ee8f1356f22efbbc17822a3dcecf03ea 384 Pfam PF07786 Protein of unknown function (DUF1624) 10 218 4.8E-16 T 29-03-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-6798695 Y880_RS09555 07e4d49cff0761ee862610c0fdb7b27b 313 Gene3D G3DSA:3.20.20.370 43 301 1.7E-7 T 29-03-2018 Y880_RS07905 11a439389fa54ff64a0711145e7a0155 71 Pfam PF13396 Phospholipase_D-nuclease N-terminal 18 53 2.6E-7 T 29-03-2018 IPR027379 Cardiolipin synthase N-terminal Y880_RS05140 43f91be0d518a7f95d18490bebf3d448 91 Pfam PF01810 LysE type translocator 41 84 3.0E-7 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS26260 6a354c0665ee637a9396e78cba42eb9c 166 Pfam PF11743 Protein of unknown function (DUF3301) 38 131 4.1E-34 T 29-03-2018 IPR021732 Protein of unknown function DUF3301 Y880_RS25685 93007fe4361aea1400aa258f50cf810f 96 Pfam PF05164 Cell division protein ZapA 9 91 7.8E-13 T 29-03-2018 IPR007838 Cell division protein ZapA-like Y880_RS25685 93007fe4361aea1400aa258f50cf810f 96 SUPERFAMILY SSF102829 10 93 7.32E-16 T 29-03-2018 IPR007838 Cell division protein ZapA-like Y880_RS05240 78ae410db85b36855537ab39aa44129b 201 Pfam PF16233 Domain of unknown function (DUF4893) 67 175 1.9E-21 T 29-03-2018 IPR032609 Protein of unknown function DUF4893 Y880_RS18985 8115e7ba9913678cb382809d31646aba 248 Pfam PF01810 LysE type translocator 59 240 1.5E-16 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y880_RS02835 a441fb16cf0ec1c7bad2dc191d099e24 199 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 8.0E-57 T 29-03-2018 IPR009698 Protein of unknown function DUF1282 Y880_RS16510 ca30809410647bf9818202e4f0f55557 244 Pfam PF12679 ABC-2 family transporter protein 67 237 6.7E-9 T 29-03-2018 IPR032688 ABC-2 family transporter protein GO:0006810 Y880_RS20925 58924e474fb9f9cec7683ec40b91e643 751 Pfam PF07793 Protein of unknown function (DUF1631) 24 745 4.4E-253 T 29-03-2018 IPR012434 Protein of unknown function DUF1631 Y880_RS15270 43f4f2c49a4661c7effef8b6641b8bcd 228 Pfam PF04172 LrgB-like family 14 226 3.4E-70 T 29-03-2018 IPR007300 CidB/LrgB family Y880_RS29810 6ad36a8cf1b86b619c2d6c411d6ef904 701 Pfam PF12571 Phage tail-collar fibre protein 7 158 5.5E-47 T 29-03-2018 IPR022225 Phage tail fibre protein Y880_RS14170 91264fa1e0ce4773b3b01232099adec6 88 Pfam PF10976 Protein of unknown function (DUF2790) 11 85 3.6E-26 T 29-03-2018 IPR021245 Protein of unknown function DUF2790 Y880_RS14365 acfc5985e58759a15d7cb1aadf30f160 311 Pfam PF01758 Sodium Bile acid symporter family 42 218 1.1E-43 T 29-03-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Y880_RS22985 fa073bfa5092e2afe34bec471db525bd 147 Pfam PF04955 HupE / UreJ protein 10 147 6.0E-51 T 29-03-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein Y880_RS11775 5b29ab32f9f20159c2b71cc6248b43bb 305 Pfam PF12101 Protein of unknown function (DUF3577) 131 257 1.3E-46 T 29-03-2018 IPR021960 Protein of unknown function DUF3577 Y880_RS11775 5b29ab32f9f20159c2b71cc6248b43bb 305 Pfam PF12101 Protein of unknown function (DUF3577) 5 120 2.0E-36 T 29-03-2018 IPR021960 Protein of unknown function DUF3577 Y880_RS10765 c4db9f81fcfd1f05274f0299be2f8677 117 Pfam PF00816 H-NS histone family 13 105 5.9E-6 T 29-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355