        gyrB    6151 ..    6194 + -24.2  -3.56092   TGCTGTTTCCAGCCG CAGCCAATAAAAAACCCCGG GAAA CCGGGGTTTTTTATTGGCTC TTTAAGCGCTCCTGA 100 46
D3880_RS00045   11376 ..   11403 +  -2.6  -3.22491   TCGCAAATTTCTGGA        GCTGCCTGTGGA AAAG TTCAAAGGCGCC         TTGGTGGTCGGCTTT  43 178
D3880_RS00050   12276 ..   12291 + -11.8  -5.06414   CTGGTATTGAGCCAA              GGCGCC GCGA GGCGCC               TTTTTGTTGCCCGCG 100 31
D3880_RS00055   13128 ..   13138 +  -3.2  -3.75817   GGAACAGCCGCTCGA                 CGTC GCG GATG                 TGTTTCTTGTCCACC  53 499
D3880_RS00085   18480 ..   18510 + -15.4  -4.09685   AAGTCAGCGAAACCC       CTCGGAACCCCCGC ACT GCGGGGGTTTTGTG       TTTTAAGCGATCAAG 100 39
        dprA   19638 ..   19648 +  -4.6  -2.55015   GTGGGCGCTGGGTGG                 GCCG CGC TGGC                 TAGCTTGGGTACACT  43 12
D3880_RS00095   20233 ..   20249 + -10.1  -3.21747   GATCAGCGGCAAGGT              GCTGCGC CCG GCGTAGC              TTGGTGCTGAGGTAG  65 10
        hemF   22457 ..   22468 +  -7.2  -2.74563   GAGGGTTGGGGAGAG                GGCG GCGT CGCC                 TGATTACCCTCTCCC  50 67
        aroE   23716 ..   23732 + -10.1  -3.32946   CATTTGCTTGTAAGC              CTGCTGC TGT GCGGCAG              TGTTGTAGTTGCAGC  68 368
        pbpG   24689 ..   24712 + -12.4  -2.72227   GGTGGCCTATTCGCC          GCTCTCCCGC GCGT GCGGGAGAGG           TCATTCAGGGCTGTT  69 114
D3880_RS00140   29837 ..   29874 + -13.5   -3.2056   GGGGCCGAGGAGCCG   CTGG-CGCCGTCCTTGAA GCT TTCCAGGGCGGCGATCAG   TTGCTCGATCTCGGT  72 388
D3880_RS00150   30301 ..   30330 +  -7.1  -3.57144   TCAACAGCTAGGCTG       GATATGCCGTCCAC CCA GCGGACGGCC-ATC       TTTCACCATGACGAG  60 30
D3880_RS00155   30600 ..   30626 + -17.2  -5.12068   AGGTAGCGGCTCAGA         GCCGGCGTGACC TTC GGGCGCGCCGGC         TTTTTCTTAGCTATG 100 46
D3880_RS00160   32146 ..   32171 + -11.9  -2.87564   CTCCGCCGCCGATTT         CGAACTGGTAG CGGA CTTCCAGTTCG          TGTGTGCCGGGGTCG  63 249
D3880_RS00175 NONE
D3880_RS00180   34282 ..   34292 +  -2.4  -4.09685   CTGCGATGGTGGAAA                 ACGC TGC GCGG                 TTTTCCACCCTACGA  57 51
        prlC NONE
D3880_RS00200   38451 ..   38473 +    -9  -3.18582   TATGCCTGTCATGTC           GCACGGGAGC GTA GCCGCCGTGC           TTGATCGCTACCATC  61 201
D3880_RS00205   40149 ..   40170 +  -7.9  -2.71681   CCATCGCGAATGAAT           TCGCGCCGA CAGG TCGGCTCGG            TAGTTGGCGCCGTTA  53 73
D3880_RS00215   42166 ..   42200 +  -5.4  -2.80935   GTCGACCCCTGATCG     GCGGCGCCCGCCTGCC CGC GGTCGTCGGATCCCGC     TATCATCGGTGCCAT  46 29
D3880_RS00220 NONE
D3880_RS00225   44155 ..   44167 +  -4.8  -4.39386   TCTTACTAGTTTTTT                CCAC CAAGA GTGG                TTTTGCTAGTTTGGC  68 422
D3880_RS00230 NONE
        ctaD NONE
D3880_RS00240 NONE
D3880_RS00245 NONE
D3880_RS00250   49345 ..   49367 + -14.8  -3.05816   TAAACCACTTCCCGC           GCGCCCTCGG GGC CCAAGGGCGC           TTCCATAAGAAATGG  80 38
D3880_RS00260   51101 ..   51125 + -14.2  -2.68072   GCCCGGCTGAGCCGG          GCGCGGCGCG CTCAA CCCGCCGCGC          GTTGGTTCTGCTGCA  72 31
        coxB NONE
        ctaD NONE
D3880_RS00280 NONE
D3880_RS00285   56343 ..   56355 +  -3.3  -2.57344   TTACCTTCGTTTACG                TGCTG TAA CGGCG                GTTGTAGCAGGGGTG  40 18
D3880_RS00295 NONE
D3880_RS00300 NONE
D3880_RS00305 NONE
        cyoE NONE
D3880_RS00315   60647 ..   60680 + -11.7  -3.59966   CTGGACGGCACTGCT     TGGCGGGTTACGCCGC TGC GCGGC-TAACCCACCC     TTGTATCTCGACTAT  77 89
D3880_RS00320   61949 ..   61981 + -17.2  -3.65425   CGATACGTGGCCAAT     GC-AAAAGCCCGCTC GAGT GAGCGGGCTTTTTGC      TTTCCAGTGTGTAGA 100 83
        znuA NONE
D3880_RS00365   69463 ..   69485 +  -5.4  -3.35679   TCGGCGGCGTGCCGG           CCTAGCGGGT TCA GCGCGCCAGG           TTGTGGATCGAGGGC  52 21
D3880_RS00375   72053 ..   72063 +  -2.4  -4.09685   GCTTTGCGGTGGAAA                 ACGC TGC GCGG                 TTTTCCACACTACGG  57 113
D3880_RS00380   72957 ..   72984 +   -12  -3.02144   CAACGGCACGCTGTT        CCGCTGGC-GCTG CGT CAGCTGCTGGCGG        TATTCACCGGGGTCC  65 186
        polA   77219 ..   77253 +  -5.7  -5.81412   GGTTCAGATCTTAAA     CCCCGAGCCTC CCCCTCCCCATAC GAAGCTCGGGG     TTTTTTTTGCCTGCG 100 220
D3880_RS00405 NONE
D3880_RS00410   79068 ..   79085 + -12.7   -4.8622   CGGGTTTACGAAAAA             GGGTGGC CAAG GCCACCC              TTTTTCATTGGGGGC 100 49
D3880_RS00415 NONE
D3880_RS00420 NONE
D3880_RS00425   82804 ..   82814 +  -8.2  -3.78022   GTTGAAAAGCCCCAC                 GCGC GCG GCGC                 TTTCCTGACTGTGGC  67 293
D3880_RS00430 NONE
D3880_RS00435   84474 ..   84490 +  -5.7  -2.70932   CTCGCGGATATTGCC              CGGCGCG GCG CGCGTAG              TCCTTGACGAAGCGG  46 253
D3880_RS00450   87532 ..   87564 +  -7.7   -3.9009   GGTTGAAGGCCTTGC     GCTAGCCCGGGCGCC CTCCT GGC-CACGGGCT-GC     TTTGTAGGATGGGTT  69 35
        hmpA   90583 ..   90632 + -15.1  -4.77165   GGTGGAAAATGCTTC GCAGTTTTCCACCCTACGCGGACT GGC AGGCTGGGTAGGGTGGATAAC-GC TTTTCTTATCCACCA 100 60
D3880_RS00470   93395 ..   93415 + -13.9  -3.40403   TCGCCATAGGGCGAC            CGCGCCGGC GGC GCCGGGGCG            TTCTGCTGGGCGCGG  77 391
D3880_RS00490 NONE
D3880_RS00495   98512 ..   98537 +  -3.2  -4.09685   TTTGCACATCCACCG         CCGCGCGG-GT GGAAA ACGCTTCGCGG         TTTTCCACCCTACGA  59 385
        oscA NONE
D3880_RS00520  103854 ..  103871 + -11.3  -3.85698   CCGCGCAACGAGAGA             GGGAAGC CGCG GCTTCCC              TTTGTCGCACGCGGA  82 125
        cysT NONE
        cysW NONE
D3880_RS00535 NONE
D3880_RS00540  107614 ..  107627 +  -9.5  -5.65177   CCAACACACAAAAAG               CCGGC ATCA GCCGG                TTTTTTTGTGGCTAT 100 48
D3880_RS00550  109328 ..  109365 + -11.3  -2.75992   CCGCGCCACTGGCGT   GCAGCTGGGCGAGGCTGG CGG TCAG-CTCGGCGAGCTGC   TGCTGTTGCCTGGCG  60 165
D3880_RS00570  114182 ..  114192 +    -4  -3.55622   GTCCTGAAAGTCGTT                 TTTG CCA CAAA                 TTTGCCACACTTGAA  49 95
D3880_RS00575  115513 ..  115527 +  -4.2  -3.28791   CAGACAGCTGCGCGG               CCTCTC GCT GATAGG               TTCTGAACAGCAGGT  47 238
D3880_RS00585 NONE
D3880_RS00590  116930 ..  116943 +  -6.7  -3.91434   TATCCACACGCCACA               CAGTC GCCT GACTG                TTTGTCAGGTAGTTT  65 44
D3880_RS00605  119031 ..  119044 +  -3.7  -3.71378   TTGGCGCAAAATGAC               GTGCG TTGT CGCCC                TTTACATCTGAGGTA  54 27
D3880_RS00610  119742 ..  119752 +    -4  -3.65046   GAATTTTTCGATAGG                 GAAT TTC ATTC                 TTGTTCGAATAGCAC  54 470
D3880_RS00620 NONE
D3880_RS00625  123063 ..  123092 + -17.3  -5.24989   ATGCGCCATATAAAA       CAAGGGCTTAGGT GAAA ACCTAGGCCCTTG        TTTTTTCCTGTGTCC 100 369
D3880_RS00630  126134 ..  126151 +  -2.7  -4.08767   AATTATCAGCATTAA             CTGCA ATTTATCC TGCAG              TTTTCAGGAGGTAAG  57 429
D3880_RS00635  127386 ..  127398 +  -6.2   -3.1706   AAAGGCCTCCGCACT                GGCC TGGAT GGCC                TTGGTCACCTGCGTT  51 168
D3880_RS00655  133796 ..  133808 +  -9.1  -3.19157   GCTCGCCCTTCGGGC                CAGCC TTC GGCTG                TTACTCCCGTTGGTC  61 361
        csiD NONE
        lhgO NONE
D3880_RS00680  139901 ..  139930 + -22.3  -3.21099   GCCGTCCGCCAGCAA       TGCAAAGGCCCGC CGAA GCGGGCCTTTGCA        TTGCTCCTGCGCCAA 100 48
D3880_RS00710  146576 ..  146588 +  -3.3  -4.19506   CATGACCGGGCGTCA                GCTGC CCT GCAAC                TTTTGCGGTTGCAGT  62 199
D3880_RS00715  148426 ..  148437 +  -5.8  -4.03413   CCCGCTGTCGCCACG                GCTG CCTA CAGC                 TTTCTATAAAACCCT  65 291
D3880_RS00720 NONE
D3880_RS00725 NONE
D3880_RS00730  151731 ..  151763 + -18.6  -3.54543   GCCTCAACCAGCCGC      TGAAAAACCCCGGC CCAGT GCCGGGGTTTTTCG      TTTCCGGCCGTGCCT 100 46
D3880_RS00735  153637 ..  153661 +  -6.3  -3.57144   CAAACGCCCCTTAGC          CGGCAGAACTG GTA CAGATTGGCCG          TTTGCGGGTGGCACA  57 174
D3880_RS00740  154044 ..  154062 + -13.1  -4.17701   AAGGTAGCTCTCAAA             CCCCGGC CTAGT GCCGGGG             TTTGTCGTTTCTGGC  95 51
D3880_RS00745  154495 ..  154528 +  -4.5  -3.28497   TTTAGGCTATGATCC     GCCGGAGCTTGTCAGG TCG TCTG-CAGGCTCCGCA     TTCCGTTTAGCCTCA  49 59
D3880_RS00750 NONE
D3880_RS00755 NONE
D3880_RS00760  157419 ..  157442 +  -4.5  -2.71268   TGCCCTGAGCGACGC          TCAGCCGCGG GTCAG CCGCGTC-GA          TCCTCTGTGCTGACG  43 33
D3880_RS00770  159243 ..  159273 +  -7.4   -3.4878   CGCGGCTGACAACAG       GCGCTGAAGCCG ATGGGCG CGGCGGCGGCGC       TTGGTTATCCTGTGC  58 32
D3880_RS00775  160096 ..  160113 + -12.7  -4.32067   GCTGCGCAACGCGAA             CAGGGCC TTTT GGCCCTG              TTGTTTTGTGCGCTG 100 47
D3880_RS00780  161618 ..  161675 +   -14  -3.92324   TACCCGGCGGGTCTT GCCGTGGCGCGGCCCCGGGCAGCGCCAA GCGC TCGGC-CAGTCCGGCGGCGCGCT-CGGC TTTGGTGTTCACCGC  84 340
D3880_RS00805  173347 ..  173395 +  -3.3  -4.79756   ATACAGCGTTAAAAA CAGCCTCAGAATGCTCA-TTTAC AACGC GTAAACTGCGC-TTCTTCGGCTG TTTTTGCCTTGTCTC  74 72
D3880_RS00810  174697 ..  174723 +  -9.3  -4.20918   GCGCTTGGTTCGCCG         CCCGGATCCGC ACCCC GCGCACCCGGG         TTTATTCCCCTTCGG  79 44
D3880_RS00820  177362 ..  177378 +  -7.9  -4.11216   CCTGAGCGGTGCGGG              GCGGGCA TCT TGCGCGC              TTTTGCCGGTCCCGG  71 36
D3880_RS00855  185573 ..  185594 + -12.9  -5.50499   CCTCAAGTGGTGCTT           GGCCGGGCC CCAG GGCCCGGCA            TTTTTTTGCCTGTGC 100 45
D3880_RS00860  186668 ..  186685 + -12.7  -4.19238   GGTAAAACAACTACA             GGCCACC TTCG GGTGGCC              TTTTAGCATTAGCGG  95 133
D3880_RS00865  188050 ..  188067 +  -6.2  -3.77553   AACAGTGCTTCATCG             CTGGGG AACGAG CCCCGG              TTCTTGGTGATCTTA  62 384
D3880_RS22975  190464 ..  190488 + -12.1  -2.74681   AGTGCGCGCAAATAT          GGCGCCCTC GAGCTAA GGGGGCGCC          TGAGTTTCTGCTTTA  69 61
D3880_RS00885  194735 ..  194771 +  -2.2  -4.30719   CTTCGTCGGACCACA   GGTAC-TTCAGGTAGGC CTCG GCCTCCTTGCGCGTGCC    TTTCTTGTCCACCAC  65 320
D3880_RS00895 NONE
        ssuE  197175 ..  197192 +  -2.5   -2.5655   CAACGTACTCAGAGG             AGAGCGC CAAT GCGCACC              ATTACTCTGCGTCGG  38 202
D3880_RS00905 NONE
        ssuD  199706 ..  199740 + -10.5  -2.71731   GGGAGAGGGGCCGGG     GGAGAGGGCGGCCGG TCAGC CCGGCGGCCTACCCC     TCGTTACGAACTGAA  61 177
        ssuC NONE
        ssuB  201418 ..  201428 +  -2.4  -4.09685   CACCTCCGGTGGAAA                 ACGC TTC GCGG                 TTTTCCACCCTACGG  57 66
D3880_RS00925  201952 ..  201968 + -10.1  -3.04792   GGTTGCAGCCGAGAT              GGCGGAG CGT TTCCGCC              TGTTCCGGCTGCTCG  60 271
D3880_RS00935  205187 ..  205204 + -10.5  -5.79526   CTGCGATAGCAAAAA             GCCTGCC GTTC GGCGGGC              TTTTTTTTGCCCTGT 100 87
D3880_RS00940  206272 ..  206311 +   -28  -4.15106   TCCTAAGGGTAAAAA  CGGCAACGCCCGCGGTCA GCAC TGACCGCGGGCGTTGGCG   TTTTGCCGATTCGTA 100 49
D3880_RS22590  211243 ..  211289 + -12.4  -2.57132   ACGCGGTGTTCGATG CGCA-CGTTGTCC-GCG-GTGCC GGTC GGCACGCGCAGGGCCACGGTGCG GTTGTCCAGGCCCCA  64 457
D3880_RS00970  213352 ..  213365 +  -3.1   -3.0094   TATAACAGTTGCAGC               TCTCA ACCC TGAGG                TCTCTATGAGTACCA  43 48
D3880_RS00975  214736 ..  214748 +  -6.2  -3.01712   TCGGTCTGATCGATC                GCGC CTCTC GCGC                TGTTGGCGAGAGGCG  49 32
D3880_RS00980  216304 ..  216339 +  -3.8  -2.70932   GCGTTGGCCAGGCTC    ACCGGGTGGTG-ACACC AAC GGTTAACGCCGCCCGGA    TACTTCAAACAACAG  41 111
D3880_RS00985  217472 ..  217515 + -12.5  -3.13164   CAAGTAAGCCAACGA CAC-CTTCCGGCGGGTGCTCC CGCC GGAG-GCCCGCCAGGAGCGTG TTGCATGGTTGAGCC  74 34
D3880_RS00990  218776 ..  218806 +    -3   -2.5409   CGCTGTAGATATCCA       AGCATGCCCGGCCG CCG TGGCCGGGCCTCAA       TGAGTTGGGAGTTGT  37 43
        potA NONE
D3880_RS01000 NONE
D3880_RS01005  221846 ..  221869 + -18.2  -5.24531   GCCAAGCCGTGACAC          CAACGGGCCC TGCG GGGCCCGTTG           TTTTTTGTGGAGAGT 100 44
D3880_RS01015  225592 ..  225630 +   -10  -3.61398   GCGCGTGCGCGAGGC   GTAACAGGGCCGCGCCCG GGG CGGGCGCGGCGTGGCGGC   TTATTCGACCAGCGG  73 22
D3880_RS01030  228202 ..  228246 + -15.5  -3.33696   CATCTGGCTGAGGCT GTCGGCGGCGACGCCGGCCAG CGC CAGGCTGACCTCGGCGCCGGC TTCCTTGGCCGGCAG  80 403
D3880_RS01040  229515 ..  229560 + -11.2  -3.23216   GTCGCCTTCCACGCG CGCGCGGATGC-GCAGCGGCGG CAGG CCGCT-TTGCAGCATCTGCTCG TTGATGGTGGTCAGA  66 135
D3880_RS01050  230751 ..  230768 + -12.7   -3.5032   TCCGGCCATGAAAAA             GGGAGGC CGAG GCCTCCC              TATTTCATATCCACC  79 50
D3880_RS01070  233717 ..  233734 +  -5.5  -2.78596   ACGGGATCATGAACC             CCGGCAA GATC TTCCCGG              TCTGATCGCGGCCTG  46 3
D3880_RS01075  234526 ..  234550 + -13.6  -3.05816   GTTGTAAGGTCGACC         CACCCTGGCCC GCCA GGGCC-GGGTG          TTCCGTCAAGGATGA  76 34
D3880_RS01080 NONE
D3880_RS01085  236405 ..  236415 +  -4.6  -4.08706   CGGCGCCAAGCCGAA                 CGTC TGC GGCG                 TTTGTATGGTGCCGA  61 467
D3880_RS01115  242613 ..  242626 +  -8.1  -4.56597   TGGCTTCGAAGGCGC               CGTCG CGCG CGACG                TTTTTGCGCACCGAC  79 199
        ilvA NONE
D3880_RS01135  245783 ..  245801 +  -8.8  -3.53012   CCAAGCCGGCCTGAG             GCCTTGCC GGC GGGAAGGC             TTTCAGCGCAGCGAA  66 27
D3880_RS01145 NONE
        ptsP  249391 ..  249414 +  -3.1  -2.91264   AGGTCTGAGCGTGGT          C-GGGGCGAT GAGCG ATCACCCCAG          TCTCTCCCTCACCCA  42 33
D3880_RS01155  250400 ..  250421 +  -7.9  -2.87132   CTCGACAGCAGGCGT           TCGGTGGCG AGGC CGACACCGG            TGTCTGGCAGGGCAC  52 176
D3880_RS01165 NONE
         lgt NONE
D3880_RS01175  253523 ..  253565 +  -6.9  -2.57931   ATCAAGGCGCCGGTC GCCGTTTAGCGCGGAGCGCG GCCA TGCTCGCCGAGCTGAA-GGC CTTCTACACCGTCGC  49 17
D3880_RS01180 NONE
D3880_RS01185  255720 ..  255740 +  -5.3  -3.09492   CGCCTGAGATGGAAC            GCGCGATGA AGA TCAGCCCGC            TGTTGCCGTTGCGCG  49 34
D3880_RS01190 NONE
D3880_RS01195  258603 ..  258640 +  -2.7  -3.53811   CGCCCATTTATGGGA  GAGGG-GC-CGGGGG AGAGGGAAAA CCCGCGAGCACCCTC   TTTCAAGCCCGTAGC  47 139
D3880_RS01200  259925 ..  259961 + -15.7  -4.64766   TGTAACCCACCGGCG    GCGCTCCCCGGCCACGC GGC GAGTCGCCGTGGGGCGC    TTTTTGGGCTATCGC 100 76
D3880_RS01205  260780 ..  260799 +    -7  -2.83012   CTAGGCTTGCAGCAG            GCGCTGCG CCAG CGCGGCGA             TCTGCTCCTGGCGTT  50 219
D3880_RS01225  266666 ..  266697 + -11.6  -4.84359   GGGGGAGCGACAATA      GAAAAAGGCCGGCA TCGC TGCCGGCCTTTTCG       TTTTTCTACCGCTAG 100 427
D3880_RS01250 NONE
        mutM  274777 ..  274803 +  -5.7  -4.28254   CAGTCGTATCGTTCA         ACCTGGCGGTC AGTCA GGCCGCTGGGA         TTTTCGCTATTCACC  68 65
D3880_RS01265  275846 ..  275865 + -16.4  -5.06414   CGTTAGGTTCTACGA            GCCCCGGG TGCC CCCGGGGC             TTTTTATTGCGCGCG 100 48
D3880_RS01300 NONE
D3880_RS01305 NONE
D3880_RS01310 NONE
D3880_RS01315 NONE
D3880_RS01320  289396 ..  289410 +  -2.7  -3.53563   CGAATTCCACTCCGG               GGGCC AGTTC GGCGC               TTTCCGGCAGGCTGT  49 148
        ftsY NONE
        ftsE NONE
        ftsX  297079 ..  297094 +  -2.6    -3.315   GAGTAACAGCTGTTT              CTGAACT TTG AGT-CAG              GTTTTGTGTCACACT  44 59
        rpoH  298034 ..  298051 + -12.7  -5.36441   TCATCGTTCTGAAAA             GCCGCAC CCGG GTGCGGC              TTTTTTCTGTCCGGA 100 54
D3880_RS01365  298708 ..  298757 +  -7.2   -3.9941   GGTGGAAAATGCTTC GCAGTTTTCCACCCTACGCGGGCT GGCA GGTCTG-GCAGGGTGGATAAC-GC TTTGCTTATCCACCA  65 47
D3880_RS01375  300007 ..  300022 +  -4.7  -3.53444   TGACCGCGCGCTGAC              CTGAC CCGGGC GTCAG               TTTCGAGACGAATGC  52 27
        thiS NONE
D3880_RS01385  301163 ..  301187 +  -2.1  -3.85698   CCTGATCCAGTAATG          TCCGTTCGT TTCATGT AGGAGCGGA          TTTATCCGCGAAGCG  54 28
        trmB  302162 ..  302174 +  -9.1  -3.19157   GCTCGCCCTGCGGGC                CAGCC TGC GGCTG                TTACTCCCGTTGGTC  61 208
D3880_RS01395  303814 ..  303827 +  -9.5  -5.42259   CCGCCCAAGAAAAAA               CCGCC TTCT GGCGG                TTTTTTTAGGCCTGC 100 46
        pilT  314333 ..  314350 + -10.5  -3.53224   TCTGATCCGCCGCGA             CCGGTGC GTGC GCGCCGG              TTTCGCCCGCAAGTC  70 36
D3880_RS01465  315541 ..  315558 + -14.1  -4.79223   CCGCTGAATGCAAAA             CGGCGCC CGCG GGCGCCG              TTTTTCATGGTCTGC 100 34
D3880_RS01475  316878 ..  316895 + -14.1  -3.30474   GCGGCCACTGCGCGG             GCCCGCC AAGC GGCGGGC              TTCGTCGTTCTGGGC  81 43
D3880_RS01480 NONE
D3880_RS01485  319748 ..  319767 +   -15  -4.72272   CGCTGGATGGGCAAA            GCCCGCTC GAGT GAGCGGGC             TTTTTAGTGCGCCAC 100 129
        pilG  326350 ..  326363 +  -9.5  -3.28857   AAGCCTCCTGATATC               CGGCC GCTT GGCCG                TTGATGCCTTTTGTA  63 30
        pilH  326739 ..  326770 +  -4.4  -3.16191   TGAGCACCCTGAATG      CGGTGCTGGTCGG CTAAAGC CCGATCGGT-CCG      TTGCTAAAACTATAA  48 9
D3880_RS01535  327356 ..  327372 + -11.5  -4.19953   ACAGATTTTCGGTGG              GGTCGGC GTT GCCGGCC              TTTTGACGTTACATG  89 40
D3880_RS01540 NONE
D3880_RS01545 NONE
D3880_RS01550 NONE
D3880_RS01555  338991 ..  339003 +  -4.7  -2.76671   ATCTGGCCGGGCAAT                GCGCC TGA GCCGC                CTTTGACATGCATAT  43 18
D3880_RS01560  339480 ..  339493 +  -9.5  -2.63913   CCTTGAGCAGAAACT               GGCCG ATGC CGGCC                TGATCTGAGGTCATG  56 4
D3880_RS01565  340330 ..  340385 +  -3.1  -3.68073   GTTCCCACGCCCCGG CGCGGGCGACACTGGC-GCGACCACCG TTGC CGGAG-TCGCTGTCCATGTCTGCCGTG TTCTTCGCTGCCCTA  51 58
D3880_RS01570  341074 ..  341111 + -10.4  -3.09492   TGCGCAGCACTCGCG   GGCCGAGGCGGGCAGC GTGGTA GCCGGCGGCCTTGGCC    TGTTCGACTTCGGCG  62 117
D3880_RS01590 NONE
D3880_RS01595  346179 ..  346197 + -13.1  -4.34402   TAGCGCCTGCCAGAA             CGCCGGC CCAGA GCCGGCG             TTTTGCTGTCGGACA 100 48
D3880_RS01625  352695 ..  352744 + -15.1   -3.9941   GGTGGAAAATGCTTC GCAGTTTTCCACCCTACGCGGACT GGC AGGCTGGGTAGGGTGGATAAC-GC TTTGCTTATCCACCA  93 134
         tkt  359341 ..  359351 +  -2.4  -2.94322   AAGAGCTGCTCGACG                 CCTG ATT CTGG                 TCGTTTGCGTAGGAT  40 21
         epd NONE
D3880_RS01655 NONE
D3880_RS01660  362028 ..  362060 + -13.3  -3.56643   ATCTGATCGGGCGCG      GCTGCCAGGCGCCCT GAG GGGGCGCTCGGGAGC      TTTGCAAGGTGTACG  88 9
         fba  363395 ..  363421 + -22.4  -3.92373   TCCTGGTGCTGTAAA         CAAGAGCCCCGC ATT GCGGGGCTCTTG         TTTATAAGTAGCCTG 100 42
D3880_RS01675 NONE
D3880_RS01680  367935 ..  367949 +  -5.6  -2.87211   TCTCTTCGTGGGTCG               CCGTCT CGT GGGCGG               TCTGTGCGGCGCGCT  46 490
D3880_RS01690  369806 ..  369824 + -13.1  -5.24129   GCCGTGAACGAAAAA             GCCCCGC CTAGT GCGGGGC             TTTTTTGTGACGCGG 100 49
D3880_RS01705 NONE
D3880_RS01710  375547 ..  375561 + -11.4  -4.08692   AGGCTCGGCGCCAAC               CCACGG CGA CCGTGG               TTTTCAGGGAAATTC  84 143
         ald  376838 ..  376859 +  -5.8  -3.05844   AGCGGTAAAGCGTCC           GCGCT-GCG TAACC CGCCGGCGC           TGTTGGGCTCGGCAC  49 82
D3880_RS01720  377684 ..  377696 +  -4.7  -3.57792   GCGTTGGTGGGTTAC                GCGGC GCG GACGC                TTTGCCGCTGCCTGC  54 88
D3880_RS01725  379280 ..  379301 +  -3.6  -3.44284   TTGGAGTCGAACCAC           TGCTCGGC GAGCAG GCCGGCCA            TCTTCTTGGTGAACA  49 352
        torT  384723 ..  384751 + -10.2  -4.37092   CAACTAACCATACAG        GCCACTAGGCGG GAGTG CCGGCAAGTGGC        TTTTGTAGGGGGGGT  87 260
D3880_RS01780  392873 ..  392903 + -11.2  -2.87683   CCCGGCCGCGAACCT      CAGGTACGCGCGG GGTCAG CCGCGC-TGCCTG       TCTGTGCCACCCTAT  66 45
D3880_RS01810  401055 ..  401107 + -14.1  -3.88291   GGCGCAGCGCCAATT GCCCGAGCTGCTGCGCGCCTG-GGGC CAGC GCCGGCCGGCGCGCCG-AGC-CGGGC TTTCTCGCCCTCGTC  91 187
D3880_RS01845 NONE
D3880_RS01850  410925 ..  410962 +  -9.8  -2.53015   GAAAGACGGGGTTTA  GCGTGCGCGCCG-G-GCA AAGC TGCTCACGGCGCGCTCGA   TGCATTGCACGGTCT  60 39
        motA NONE
        motB  414461 ..  414480 +   -15  -4.96848   GCCTGGAAAGCGAAA            GACCGCGG CCAG CCGCGGTC             TTTTTGTCTGCGCCA 100 47
         orn  416181 ..  416195 +  -2.1   -2.7186   CAGCACTACCGCGAG               CACTT CCTCA AGGTG               TGATTCCGCGGCTTT  39 8
D3880_RS01885 NONE
        tsaE NONE
D3880_RS01895 NONE
        mutL NONE
        miaA  423698 ..  423720 +    -2   -3.8186   GAAATACCTAAGCTC           GGTCTC CATATTGAGCT GAGACC           TTATTGATTGCCGTC  52 7
         hfq  424060 ..  424084 +  -2.7  -4.08958   AGCTTTCGCCGAGCC          GGGTAACGCCT GAT AGGAGTTCGCC          TTGTTCTTTGAGCGT  57 13
        hflX  425439 ..  425457 + -13.8  -4.15066   TCGGTAGCATGGTCG             GGCGCGCC GTG GGCGCGTC             TTTGCTTTATCAGTA 100 78
        hflK NONE
        hflC  427591 ..  427607 + -13.7  -5.14477   TGTTATCATAGGCCA              GCCGGGA AAA TCCCGGC              TTTTTTGCGTCTGTG 100 94
D3880_RS01930 NONE
D3880_RS01935 NONE
D3880_RS01940  430398 ..  430430 + -17.8  -4.09685   GATTGTCGTGGTAAC      AGACAAAGGGCCGC TTTGT GCGGCCCTTTGTCG      TTTTGGGCGCTGCGC 100 39
         rnr NONE
        rlmB  434200 ..  434210 +  -8.2  -3.51365   CAATTGCCTTGCGCG                 GCCC AGG GGGC                 TTCTCTAGAATGTCG  62 76
        rpsF  434780 ..  434797 +  -2.6  -3.12702   CACGGATCTATTGAG             GAGCCA CTGTCA TGGCAC              GTTTCTTCCGTCGTC  43 43
        rpsR NONE
D3880_RS01970 NONE
        rplI  436465 ..  436496 + -13.6  -4.45693   CTGGCGGTTAACATC      GGGCACGGTTCCGC TTCG GCGGGCACGTGCCC       TTTGTCTTTCTGTTG 100 72
        dnaB  437961 ..  438000 +   -18  -4.13014   TTTGCGCAGATCCTT  AAAAACGGGCGCCCAG CAGTTAAA CTGGGCGCCCGTTTTC   TTTTCAGGATGTCGC 100 59
         alr  439104 ..  439158 +  -3.3  -4.30057   CAGCTTCTAGGGCGG GCCGACGAGGACGCC-AGCGGCTGCGC CCG GCGC-GCCGCCAGGCATCGGATTTGGC TATTTTTTGTGCTAT  65 31
D3880_RS01990  441526 ..  441544 + -11.7  -5.33405   AAGCGATAACGAAGA             CGCCAGC CCAGT GCTGGCG             TTTTTGTTTGCTGCG 100 46
D3880_RS01995 NONE
D3880_RS02000  444257 ..  444277 + -10.4  -3.53012   TGCTCTATGCGCCCG            GCGGCTGT CGGGC GCAGCCGC            TTTAACGCGGGGCGG  70 146
D3880_RS02005  445231 ..  445262 + -17.3  -3.53012   AGCGGGGTGAGGTGT      TGCGCCC-CGCCCG ACTGG CGGGCGAGGGCGCG      TTTCAGGACACCAGC 100 31
         azu  447043 ..  447057 +  -6.4  -2.97166   CCGCATCGACGGTTC               TAGGCT AGT GGCCTA               TGTGGTTAGTTCAAT  51 87
D3880_RS02025  448260 ..  448279 +  -4.2  -3.44284   GCGCACCAGTGGCGT            GCAAAGCGC GAA GCGC-TGGC            TATTGTTAGTAGGCA  52 290
D3880_RS02030  449607 ..  449626 + -16.4  -3.35522   GCAGTAACGCCGCTG            CCGGCCGC CCGG GCGGCCGG             TGTTTGCGGGCATTG  89 34
D3880_RS02035 NONE
        livM NONE
D3880_RS02045 NONE
D3880_RS02050  453558 ..  453586 + -18.8  -2.62613   GCGCGCGAGGGAGAG        GCCGGGCCGGCG GCAAG CGCCGGCCCGGG        GTGTTTCAACTGCCG  88 62
D3880_RS02065  456915 ..  456943 +  -8.1  -3.21099   CCTGGGCGCCCATGT        CGAGCAGGTGG CGCATGA CCGGCTGCTCG        TTGATGGTCCACAGC  54 98
D3880_RS02105  464548 ..  464562 +  -4.2  -3.94409   CGCCAGCAGCGAGAT               CACAGC AAT GCTTTG               TTTGTACATGGTGTC  59 462
D3880_RS02115  466089 ..  466115 +  -5.1  -3.53012   CCGAATGGAGCGCGG         GGCTAGACTGA AACGG TGAGTCCAGCC         TTTCCCGCCCCGCAC  52 225
D3880_RS02120  467252 ..  467264 +  -4.7  -3.37796   GCTCGGCAGGCGTTC                GGCGG CTT CCTCC                TTGTCGATGCTGGAC  51 157
        bioB  472490 ..  472506 +  -2.1  -2.53876   CCCGCTTGCGGTTAT              CCACCAG CTT CCGGTGA              TCCGTTCCCATGCCA  37 112
        bioF NONE
D3880_RS02160 NONE
        bioC NONE
        bioD NONE
D3880_RS02175  476347 ..  476365 +  -2.4  -4.30576   AGGCAAAAGGGCAAA             CGTATGTT TCA AACATCTG             TTTTACTGCTGGGCC  63 130
D3880_RS02180  478291 ..  478328 + -25.1  -3.16564   GCCTCGGCGGGTCGT   CGAAAACGCCGCGTACC GCAA GGTACGCGGCGTTTTTG    TTGGTGCCATAGACC 100 41
D3880_RS02185  479832 ..  479845 +  -5.9  -3.01712   GATGAGGCCACCGTG               CGCTG ATGG CGGCG                TATTCAGCCGGCGCA  49 20
D3880_RS02190  481760 ..  481777 + -14.1  -4.27584   AAAAAAGCCGCAAGA             GCCCGCC ATTT GGCGGGC              TTTTGCATTGAGCGT 100 49
D3880_RS02195  483720 ..  483737 + -14.1  -5.28942   CGCCGTCATGCAAAA             GCCCCGC GAAT GCGGGGC              TTTTTGTTTAGCATG 100 45
D3880_RS02200 NONE
D3880_RS02205  485555 ..  485574 +  -5.6  -2.90723   GGGCCTCTGGTTGCT            GGC-CGGGG TGG CCCCGCGCG            TCTGCTTGCGCGTAC  48 219
D3880_RS02225 NONE
D3880_RS02230 NONE
D3880_RS02235  491271 ..  491292 +  -3.6  -4.23386   CACCTCTTCCCTGGC           GAGCGGGG AGTAGG TCCAGCTC            TTGTATTTTTTCTGG  65 180
D3880_RS02245  493463 ..  493485 +  -3.2  -4.43477   AGAGCGATCTTCTTT           GAGACGCGCC CAA GGCGTGCTGC           TTTTCGTTCAATCAG  66 270
D3880_RS02250  494510 ..  494551 +   -16  -3.72324   CTGAGCCTGCGCTAA CGCAAAGGGCG--GGTGCCG TTTT CGGCGCCTTCGCTCTTTGCG TTATTCATCCCGCTG  95 37
D3880_RS02255 NONE
D3880_RS02260 NONE
D3880_RS02265  498399 ..  498422 +  -8.8  -2.52464   ACCCGGAGCCGGCGG          CCCGCCGCACG CCT TG-GTGGCGGG          TCGCTTCACCGCAAC  56 42
D3880_RS02270 NONE
D3880_RS02275  501588 ..  501603 + -11.8  -4.90869   AGCGCTGTACAGAAA              GGGGCC GCAA GGCCCC               TTTTTCATTGGTAAT 100 51
D3880_RS02280 NONE
D3880_RS02285 NONE
D3880_RS02290 NONE
D3880_RS02295 NONE
D3880_RS02300 NONE
D3880_RS02305 NONE
D3880_RS02310  509345 ..  509377 + -13.6  -3.59262   CAAGATGTTCGCGAT     TGACAGAAACCAGGG GCTT CCCTGGTTTCTG-CG      TTTCAGCCTGTGCAA  88 106
D3880_RS02320  512513 ..  512527 +  -2.8  -3.28712   AAGAAGGAAGTCTCT               CGTG TCCGCAT CACG               TTCTAGCGAAACCCC  44 138
D3880_RS02325 NONE
D3880_RS02330 NONE
D3880_RS02335 NONE
D3880_RS02340  515870 ..  515882 +  -3.3  -3.46647   AGCGCGCACTGCTCA                AGCTC AGC GAGCC                TATTTGATCCGTGCG  49 6
        dmpE  516794 ..  516822 + -14.5  -3.14132   ATGCAGCACTGACTG        CGAGCCGGCACTG CGG CAGTGCCGGCGCC        TTAATCCGGCCGCAG  82 66
D3880_RS02350  517664 ..  517682 +  -4.4  -3.57792   GGGCCGGTTCTCGCT             GCGCAGGG CCA CCATGCGA             TTTCGGGATAACTGC  54 97
D3880_RS02355 NONE
D3880_RS02360 NONE
        dmpG  520326 ..  520336 +  -2.4   -5.4756   GTTTTCACACAGCCT                 GCCG TGC CGGG                 TTTTTTCTTGCCATT  88 225
D3880_RS02370  521660 ..  521672 +  -9.1  -3.16564   CCTCGCCGTTTTGAC                CAGCC GGA GGCTG                TTACTAACGTAGCGC  61 127
D3880_RS02395  527633 ..  527644 +  -2.2  -3.19157   TGAACCGATGCACCA                CGTT GGGA GACG                 TTCATGCAGTTACTG  43 38
D3880_RS02400  528510 ..  528546 +  -7.4  -4.16943   GGCTCAGGCGGGCCT   GTT-CTTGAGCAGG-AGC GGG GCTTCCTGCTCCAGCAGC   TTTTGCACTGTGCGC  71 78
        tsaD  539326 ..  539381 +  -9.7  -2.57132   GCCGTTCGCGCCCGG CCAGCAGGTCGCGTAGATTG-CT-GCG GTGA CGCCAGACAATCAGCGCGGTCAGCAGG GTTATCGGCAGCAGC  56 77
        folB NONE
        folK  540855 ..  540880 +  -5.3  -3.99678   TTGCATCCGGGCTAT         GCCTCGCGC CTACGCGT GCGCGGCGC          TTTCCTTGTAGGCCT  62 55
D3880_RS02515 NONE
D3880_RS02520  557521 ..  557551 +  -6.6  -2.78384   CGAACGCCAGCTCGC       GGCGGAGGCCTGAG ATG CTCTGGCCGGCGAC       TGTCATCGGCGCCAC  50 13
D3880_RS02525  558782 ..  558833 + -10.7  -2.82516   GCTGAAGCTCGGCGC TGCGTCCGGCGGCGCTGC-CGCGG CTGCC TCGGGCGTGGCGCTGGCGGGCGCG TCTGCTGCTGGCGGC  61 493
D3880_RS02535  561849 ..  561859 +  -2.4  -4.10161   GCTTGTCGGTGGAAA                 ACGC TGC GCGG                 TTTTCCACCCTACTG  57 68
D3880_RS02540  563004 ..  563015 +  -2.2  -3.86822   TTGCGCCGGCTGCAG                GCTT CTCT AGGC                 TTTCTGCACGGCTTA  54 352
D3880_RS02545  564162 ..  564189 +  -2.6  -3.92746   CCGCGCCCTCGATCC        GCTGCAGGCG GAGTAGGG CGCATTCAGC         TGTTTTTCCAATCCC  54 10
D3880_RS02550  565344 ..  565389 +  -8.4  -3.53343   GCTCCACCCATCCTA CTG-TCCGCAAGTCCCTCGCCCC GCT GGGGCGAGGGA-T-GCCAATCAG TTTCACCGGAGCCTT  62 113
D3880_RS02555 NONE
D3880_RS02560  567565 ..  567605 + -16.9  -3.17194   GCGATGTTGGGCTAG  TGCGTAGGATGGGTTGAGC GAA GCGATACCCATCCTACGCA  TTGGCTTCCCGCACT  89 95
         rpe NONE
D3880_RS02570  569243 ..  569265 +  -4.7  -3.64703   GCGCCTGATCGATTC           CTGACCGGC ATAGC GCCGGTGCG           TTTGCCTACCGACCG  54 33
        trpE NONE
D3880_RS02580 NONE
        trpD NONE
        trpC  573293 ..  573323 + -24.2  -3.89346   TGAACGATCCGCCCA       CGAAAAAGCCCGGC ACT GCCGGGCTTTTTCG       TTTCTGCACTGGGCG 100 38
D3880_RS02600  574621 ..  574653 +  -2.5  -2.78384   CTACGAGATCGTCGA      GTTGGGTTGAGCCGC GTG GCTCCGCCATCCAAC      TATCATAAAGGCGGC  39 16
        speD  575871 ..  575887 + -15.1  -5.18726   GTAGGAAAATAAAAA              GGGCGCC ATT GGCGCCC              TTTTTGTTGTCCGCA 100 223
D3880_RS02620  578731 ..  578743 +  -9.1  -3.19157   GCTCACCCTTCGGGC                CAGCC TTC GGCTG                TTACTCCCGTTGGTC  61 214
        argC  583564 ..  583595 +  -5.7  -4.82901   TAGTTGACCACTTTA      GTCGGGGAAGCGG ATAATG CCGCGTCCCCCAG       TTTTTCTGACGGCCA  81 63
        erpA  584000 ..  584026 + -18.1  -3.02186   GCTGGTGAGATAGCT         CAACGCCGTGC CCAGT GCACGGCGTTG         TCGTTTCTGCACTGT  89 44
        tyrS  588420 ..  588437 +  -2.6  -4.46233   CAGCATCACAAGTAA             CACTCG TGAATT CGAGAG              TTTATTTGCGATTGC  66 443
D3880_RS02675  590095 ..  590136 +  -2.3  -2.60075   CTTGCGAAAAGCGAT TGGGTT-TAGACCCGAGAGT GAG ACGATTGGGTCTGTAGCTCA GTTGGTTAGAGCGCA  38 91
D3880_RS02680 NONE
D3880_RS02685  590326 ..  590368 +  -3.5  -3.54543   ACGCAATCGCTGAAA GCTCAGAATTGAATGCTTA AAGAG TGAGCCTTGAATTCTGGTC TTTGCGCCAGTAACT  49 46
D3880_RS02690  593444 ..  593457 +  -5.3  -2.74192   CATATAACACCCAAA               CAATC TGAC GATTG                TGGTGTTGGACGGTG  46 38
         rrf  593705 ..  593740 + -23.4  -3.34398   GTCAAGCTCCTATCC    CAAACCCCCAGCCCGC GACA GCAGGCTGGGGGTTTG     TCTTTGCGCGCGGGA 100 34
        birA NONE
D3880_RS02705 NONE
D3880_RS02710  596241 ..  596259 +  -6.6   -3.0464   TTTGACTAGAATGGC             GCCCGCTT CGC AGGCTGGC             TCTTAAGGCTGGGTT  52 44
D3880_RS02715 NONE
D3880_RS02720  596550 ..  596560 +  -3.2  -3.15427   TCCCGCTACCCGCTC                 CAGC TTT GTTG                 TTCGTGCAAAGTGTT  45 23
D3880_RS02725  596660 ..  596689 + -15.3  -4.30844   TGAGCTCCATCTAAA       TAAAGGCAGATAT GCAA ATATCTGCCTTTA        TTTTAATGGTGGCGT 100 32
         tuf  597951 ..  597976 + -10.4  -5.10933   GTTGATCTCATCTGT         TCGGGCCGGC ATAATG GTCGGCCTGA          TTTTGTTTTAGGTCA 100 44
D3880_RS02735  598053 ..  598089 + -11.6  -3.54741   GTTCGATTCCCTCCT    GACCTGCCAGATTCTC CGATA GTGGATCTGGCACGTC    TTTCACAGGATCCTC  74 17
        secE NONE
        nusG  599040 ..  599062 +  -9.8   -4.4767   AAATGCATCCCATAC           CCCTGCAGTC GTT GGCTGTGGGG           TTTTGTCGTCGCTGG  89 45
        rplK NONE
        rplA NONE
        rplJ  600952 ..  600975 +  -7.4  -2.69947   GCGACCAGAAGGAAG          CTGCTGCGGCC TAA GGCTGT-GCAG          GTTCTCTCAAGCTTA  50 12
        rplL  601459 ..  601482 +   -16  -4.78149   TCGCGTAAGGCTGAT          GGCTGGTGGC AAAT GCCACCGGCC           TTTTTCCGTTCTAGC 100 72
        rpoB  605714 ..  605738 + -12.2  -3.14132   ACGTGACGCGCATCG         GGAGCGTGGCA GCAT TGCC-CGCTCC          TTGCTCCGCCAGGAG  74 42
        rpoC  610039 ..  610061 +   -12  -5.05113   ATGCACCCCTAAATT           TGGCAGGGCG TCT TGCTCTGCCA           TTTTGTTTATGTCGA 100 109
        rpsL NONE
        rpsG NONE
        fusA  613167 ..  613179 +  -9.1  -2.71791   CTGGTTAAAAAACAA                GGCTG ATT CAGCC                CTTTAGGCAAGAGGT  57 20
         tuf  614413 ..  614440 + -12.8  -4.52589   CGAGGATCGCGGTAA        AAGAAAAGGCCC TTCG GGGCCTTTTCTG         TTTTCTGTGCAAAAG 100 42
        rpsJ  614858 ..  614877 +  -9.4  -2.63301   GCAGATCAGCCTCGG            CTAAAACC TTGG GGTTTTAG             TCGTGTAACGCTCTG  56 22
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ NONE
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN  621188 ..  621217 + -15.1  -3.91858   TGCCGTTGTTGATCA       AGAATCAAGCCCC TTTT GGGGCTTGATTCG        TTTCTGGGCTGTCTA  93 64
        rpsH  621694 ..  621704 +  -6.8  -3.17146   GGTGTCGGCGGCGAA                 GTGC TTT GCAC                 TGTGTTCTAAGGGGG  54 5
        rplF NONE
        rplR NONE
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY  625058 ..  625077 +  -4.9   -3.0634   ACCTGAAGGGTTACG            GCAGCGG CATGCT CCGCTGA             TGTTCCCGTAAGGTT  46 6
        rpmJ  625243 ..  625266 + -11.7  -3.72745   AGCTAAAGCTACAAG          CCCGGCAGC TAGTGC GCTGTCGGG           TTGATTATTTGTTTT  80 46
        rpsM NONE
        rpsK NONE
        rpsD NONE
        rpoA NONE
        rplQ  628244 ..  628260 + -10.8  -5.32944   GGTTGTGCGAAAAGA              CCGGGC CTTGT GCCCGG              TTTTTTCGTTATCAG 100 47
        katG  631011 ..  631041 + -16.9  -4.27316   GAGCCCGTCCGCTTA       GTGCAGCGCCTCC CTTGT GGAGGCGCTGTGC       TTTTCGCTTGACCGG 100 86
         bfr  631598 ..  631625 + -15.5   -4.8622   GCGATCCAAGAAAAA        GCCCCGGGGCC ATTGCA GGCGCCGGGGC         TTTTTCGTTGAGGCC 100 45
D3880_RS02955 NONE
D3880_RS02960 NONE
D3880_RS02965 NONE
D3880_RS02970  638338 ..  638356 + -13.1   -4.8048   CTAGAGCACGAAAAA             GCCGGCG ATAAA CGCCGGC             TTTTTCGTATGCGCG 100 37
D3880_RS03000  643399 ..  643444 +  -8.1  -3.63744   CCCAGTTCGCCGCGT TCGGCCAGGCAGCGGGCGTAGA GAA TCAGCGCC-GCGGGCTGGTCGC TGTTTTCCCCGAGCA  63 459
        nrdR NONE
        ribD  647100 ..  647122 +  -5.7  -3.62176   CCTTTCGATCCCATG          C-CCTGTTTT GACC AAAACAGGAG           TTTGCCCATGTTGTT  57 283
D3880_RS03030 NONE
        ribB  648956 ..  648981 +   -14  -4.38503   ATAAGGCCTGTGGCC         GATGGGGCGC CAAGTT GCGCCCCGTC          TTCTTTATTCTTTAC 100 37
        ribE NONE
        nusB  649985 ..  650042 +  -2.6  -3.35679   CGCGACGCCGAAGTG CGCGGCGCCA-AGCGCTAAAGGATGCCG CACG CGTC-TCCTTTCCCGCTCTGCCGGCCCG TTCTCCGTGACCGGG  44 8
        thiL  651325 ..  651337 +  -9.1   -3.1886   GCTCGCCCTGCGGGC                CAGCC TTC GGCTG                TTACTCCGCTTCGCT  61 318
D3880_RS03055 NONE
D3880_RS03060 NONE
D3880_RS03065  653745 ..  653787 +    -9  -2.62983   ACCAAACTGCCGAAA GTCTCGCTGGCGGCGCCG AGCGCGA TGTCGCCGCCGGAGAAAC TGCTGTCGACATAGC  54 380
        ribA NONE
D3880_RS03100 NONE
D3880_RS03105  659967 ..  659997 + -16.8  -4.07687   GGGCTGCGGCCAATA       AACCAAGGCCCCGC AGT GCGGGGCCTTGGCG       TTTTCGCGGGAGGGT 100 406
D3880_RS03130  670150 ..  670167 + -14.1  -5.45652   GGCTTGAATAAAAAA             CGCCGGG CATG CCCGGCG              TTTTTTATTGCGGCT 100 218
        rfaH  672851 ..  672875 +  -4.9   -4.2349   AGCTCAATTTGCCTT          CTTCACAGCGT GCT GCGCGGTTAAG          TTTTGCCTGTAAAAA  65 284
D3880_RS03150  673962 ..  673989 + -14.2   -4.4267   CAGCTGAATCAACAC        CGATGCTGGCGT CCAT GTGCCAGCATCG         TTTTGCCTTTTCCAC 100 53
D3880_RS03155  675225 ..  675243 +  -9.5  -4.15044   GCCCGTAAAAAAATA             GGGGGGC TCTTC GCCCCTC             TTTGTTCCCCCGAGA  79 47
D3880_RS03160 NONE
D3880_RS03165  678174 ..  678184 +  -6.8  -2.53015   CCTAATTGCTTGATG                 CCTG CGC CAGG                 TGAGTTACGGCGTGT  48 36
D3880_RS03170  679362 ..  679372 +  -2.4  -3.54488   GCTGGTGTTGCTGTT                 GGCC TTG GTCC                 TGTTATTTGCAGGGG  47 138
D3880_RS03175  680145 ..  680180 +  -6.1  -3.28791   ATTACGCTTCGCTAA    TCCGCCCTACCAAGC CCCAGA GATTCGTAGGGTGGG     TTGTAACCCACCAAT  52 169
D3880_RS03180  681745 ..  681756 +  -4.4  -4.18488   CGCCGTTTACCCTGC                TGTC GAAC GACA                 TTTATTGAAATCAGT  65 6
        wbpA NONE
        wbpB  684184 ..  684207 +  -3.1  -3.59979   TGAAGGTCACCCATT          CCTCAACAGC CTGAA GC-GCTGAGG          TTTGCCATGAGCCAC  51 4
        wbpD NONE
D3880_RS03200 NONE
D3880_RS03205  687563 ..  687574 +  -5.8  -3.79519   CACGAACTGATGCGC                CGCA TTCA TGCG                 TTTGGTCATGGAATT  60 259
D3880_RS22855 NONE
D3880_RS03215 NONE
D3880_RS03220 NONE
D3880_RS03225  691146 ..  691165 +  -2.2  -3.62597   ATATTTTGAGTTTTG            CATG-ATGA AAG TCGTACATG            TTATTGAGGCATGGA  49 88
D3880_RS03230 NONE
        galE  693318 ..  693334 +  -5.1  -4.27796   AGAGTCTCTAGCCTT              TATGCAG TAT CTGCGTG              TTTTGCCCTTTCTTG  65 92
D3880_RS03240  693706 ..  693717 +  -5.8  -3.91897   CTTAATCCCCGTGCA                CCTC GGCT GAGG                 TTTGTCACTGGCAAA  62 53
D3880_RS22600  694824 ..  694847 +  -4.4  -3.14132   CGCTTCGAAGCTGCC          CGCGCCTTGC CCCA GCAGTGGGCG           TTCCTGCAGCAGCGG  47 420
D3880_RS03270  699465 ..  699475 +  -2.4  -3.85698   ACCACCGACTCCTTG                 CGGC GCA GGCG                 TTTCTCGAGAAAGCG  54 358
D3880_RS03280 NONE
D3880_RS03285  704619 ..  704631 + -10.5  -3.14564   GACGGAAATGCTCGC                CGGCG CAG CGCCG                TTCATCAGCAGCTGA  62 447
D3880_RS03300  706635 ..  706646 +  -5.8  -3.84246   AAGTCCGGAAAAATA                GGCT AAAA AGCC                 TTTAATAATTAAGCG  60 152
D3880_RS03305  707562 ..  707572 +  -2.4  -3.01791   TCTGCTGAGCGGCGC                 GCCC TAG GGTC                 TGTTCGGCAGGCGGT  41 19
D3880_RS03310  708821 ..  708865 + -10.5  -3.62597   CGCCTTGACGTCGGC GCTGGCGCGCTGGCGGTCCTG CCA CAGGGCCAGCAGCTTGCCGAC TTCTTCCAGGGTGAA  70 287
D3880_RS03330  712837 ..  712865 +    -3  -3.14881   TCGGCTCCTGGCTGA        ACAGTGCCTCGC AGAGG GCGATGAACTGG        TTGATGAAGGCATTG  44 460
D3880_RS03340  714601 ..  714614 +  -2.3  -4.06419   TCCTGAGGAGCGCCG               CCGTG TTCT CACGC                TTCTTTATCGACCGG  57 35
D3880_RS03345  717832 ..  717863 +  -6.4  -2.52676   AACCCACCAACCCTG      CTGGACGCCGGTGCC CAG GGCGGCCGCG-CCGG      TGGGTTACGCCGCTA  48 69
D3880_RS03350  719512 ..  719543 +  -6.6  -2.62946   TGGTCGTGGCACCGG      CGCTAGAGCCCT CTAACTCA AGGGTTTTGGCG       AATTTTTCCGCTGTT  49 304
D3880_RS03365  722278 ..  722295 +  -8.3  -3.17075   TCCAGCTGGGCGAGG             CGCGGGC TGTA GCCCGGG              TTGCCTTCGCAGCCG  56 322
D3880_RS03375  724044 ..  724060 +  -9.3  -3.13522   CCCTGCTGCACCCTG              CCCCCGC TCG GCGGGCG              TCTTCGTGGGCGCCT  61 42
D3880_RS03380 NONE
D3880_RS03385  726886 ..  726928 +  -9.8  -3.01924   CGCAGTAGCGCCGAG CAGCCGCGGCTCAGTCCGG CCGACC TTGGCCTGAGCCGCG-CGG TATTCGCCACCAATG  64 33
D3880_RS03390 NONE
D3880_RS03395 NONE
D3880_RS03400  729613 ..  729632 +    -5  -3.36327   CGGTCATGCCCAGGC            CTTCG-TGC AGG GCGGCGAAG            TTCTCGGTGACATAG  51 411
D3880_RS03425  734508 ..  734521 +  -9.5  -4.27617   CGCTGTCCCAGTAGC               GCGCC CTAG GGCGC                TTTTCCTCGGCTATG  79 27
D3880_RS03430  735964 ..  735980 +  -6.5  -3.57144   GTTGTAGGCGCAGGG              CCGCG ATTTCCG CGCGG              TTTCCGAGTAGGCAG  60 34
D3880_RS03435  737195 ..  737236 +  -6.5  -3.02829   CGGCCGATTCGCTGG TTTCCCGCTCCCCGTGG GGAGCGGG CCAGGGAGAGGGGGAAG  TCTTCGGACCCTCTC  52 45
D3880_RS03440 NONE
D3880_RS03445  739051 ..  739063 +  -4.8  -2.91924   CGTGCCGGCGTACAT                CCCT GATGG AGGG                CTTTATGCGCGATCA  45 20
D3880_RS03450  740780 ..  740792 +  -3.3  -3.16323   ATGCTCATTTACAAC                GCGTA AAC TCCGC                TTCCTCAGCCGTTTT  45 265
D3880_RS03475 NONE
D3880_RS03480 NONE
        tesB  747753 ..  747764 +  -3.6  -3.04144   TGAAGCTGCACGCGG                CCCG CCAC TGGG                 TGTTCGACATGGACG  43 38
D3880_RS03490  748427 ..  748484 + -21.3  -3.31792   TCAGAAGGTGAGTTC CAGGTTCAGCGTCGGCGTCGAGGTGCGG CTG CCGCGCC-CGCCGTCGACACCGAACTTG TTGTGCCAGTACTCG 100 128
D3880_RS03525  756489 ..  756523 +  -6.3   -3.6968   CCCAGGCGCTGAGGG     CGTCGCCGGCGCGGT AGATC ACCGTGTCGATGAAG     TTCTTGGCCTTGTAC  59 376
D3880_RS03545 NONE
D3880_RS03550  763183 ..  763202 + -11.4  -5.43866   TTAAGCAACACCCAA            GGCTGGTC GCAA GACCGGCC             TTTTTTTCGCAATTA 100 37
D3880_RS03555  764207 ..  764226 + -13.6  -5.28942   TTGATGAACACAAAA            GGCCAGTC GAGA GACTGGCC             TTTTTGTTTGCAGTG 100 63
D3880_RS03585  770276 ..  770293 + -14.1  -5.24129   GCCTTGAACAAGAAA             GCCCGGC TTAG GCCGGGC              TTTTTTGTGAGCGGG 100 85
D3880_RS03605  774491 ..  774522 + -17.2  -2.71712   CGCCGGCCCGGCACA      GCACCGGCTCGGGC GTGC GCCCGTGCCAGTGC       GTTTCGCCGGGCGCG  80 405
D3880_RS03630  779142 ..  779161 + -13.6  -5.93809   CTGCACTATTAAAAG            GGGGCGAA GCGA TTCGCCCC             TTTTTTTTGTGGGCG 100 47
D3880_RS03640  782181 ..  782207 +  -7.9  -2.63901   TGACCTAGACTCTGC        GGCAGGCGGCCG AGAG CGGC-GCCGGTC         ATTGATTCGTAGGGT  52 45
D3880_RS03645  783820 ..  783831 +  -2.2  -3.35813   CTAAGAGCCTGTTCA                CGACC TCG GG-CG                TTCCTTCCCGTAGGA  44 37
D3880_RS03650  785373 ..  785396 + -13.2  -3.75665   GCGACACGCTGCTAT          GGTGGGCGAGC CCT GCTCGCC-ACC          TTTGATCCCCTCTCC  91 255
D3880_RS03665 NONE
D3880_RS03670  789550 ..  789571 + -14.4  -5.81412   CTCCAGCGTTGTCTG           CGGCGGGC CTTGGT GCCCGCCG            TTTTTTTTGCCTGCG 100 73
D3880_RS03680  791668 ..  791681 +  -9.5  -3.64703   GCGGGTTTCCCAACA               GGCCG GAGC CGGCC                TTTCAGTAGAGGACG  68 99
D3880_RS03685  792399 ..  792422 + -19.6  -3.59979   GCAAGTGACCCATGC          GCCGTGCGCC GTCC GGCGCACGGC           TTTCCCCTGAAGCAA 100 33
D3880_RS03690  793092 ..  793121 + -20.7  -3.11634   CGCCGGACCACACCA       CGCCGGCCCCGGA GCAG TCCGCGGCCGGCG        TTGGGTCGTGTGGGA  95 42
D3880_RS03745  806423 ..  806462 + -21.8  -3.85698   GCCTGGGTCGGAAAA  CAGAAAACCCTCGG-GAAA TGA TTTCTCCGAGGGTTTTCTG  TTTCTAGGCCCCGAG 100 354
D3880_RS03765  810302 ..  810320 +    -8  -3.57792   CGGGGACAGAAGAAC             CGCCCGGC GTA GTCGCGCG             TTTCACCATCGATCG  60 241
D3880_RS03805  814554 ..  814568 +  -3.4  -3.08197   GCTAAGCGGTGGGTG               CCTGCT TTT GGCCGG               TCTCTGTCTCTCGCG  43 36
D3880_RS03820 NONE
D3880_RS03825 NONE
D3880_RS03830  823972 ..  823998 + -12.3  -3.39908   CTCGGTTGAAACCTA         TCCGATGGCGG GGCGA CCGCTGTCGGA         TCTGTTTTAGGGGCC  76 329
D3880_RS03835  825609 ..  825646 + -12.5  -3.33261   TCACCAATGTGGTGC   GGCCGACCTGGATGCGC TCGA GCGCGGCCTGGATGGCC    TTCTCCGACTTGGAG  71 507
D3880_RS03875  834708 ..  834738 + -12.5  -2.94218   CCGCCTTCCTGCTCC       CCCTGCCGTCGCG CCCAC CACGGTGGCAGGG       TGTCTGCTGCGCAAT  70 77
D3880_RS03880 NONE
D3880_RS03885 NONE
D3880_RS03890 NONE
D3880_RS22905 NONE
D3880_RS03895 NONE
D3880_RS03900 NONE
D3880_RS03905  841707 ..  841724 +  -3.3  -3.13403   CTGACCCTCGACCTG             TAACCGG TTCC CCGGCTG              TGTTCGTAACCCGCG  45 23
D3880_RS03910 NONE
D3880_RS03915  844089 ..  844101 +  -4.8  -3.19157   GCAGAGTCAGATGCG                CTGG ACTGA CCAG                TTCCTCGCCTTGGTC  48 507
D3880_RS03925  845632 ..  845650 +  -3.8  -3.88137   CCGCCACTCCTGGAT             GGGTTG CCTGAAA CGACCC             TTTGTAGAAGCTTCT  56 69
D3880_RS22605  846211 ..  846234 + -11.6  -2.58767   AGTCACTCCGTTCAC          TGGGACGGGC TAAA GCCCGCCCCG           TGGCTTAATCGTTCG  64 43
D3880_RS03930 NONE
D3880_RS03935  847524 ..  847557 + -16.7  -2.56571   AGTGCAGCGGCCCTT     TCCCACGAGCGGCAG CCCA CTGCCGGTCGTGGGC      TGCCTTGCCTCTGTG  83 40
D3880_RS03945  849705 ..  849719 +  -5.7  -3.57561   AGTTTTGATGTGCCG               CAGCA CCGGA TGCTG               TTTGCAGCGTTGGCG  57 156
D3880_RS03970  859819 ..  859833 +  -4.2  -2.69151   CGTAGGGCGACGATT               GCCC AGGTGGG GGGC               TGATCTCTGCCGGAC  43 36
D3880_RS03975  861036 ..  861059 +  -4.6  -3.43151   AATAGGGGGGGCTAT          TGGCAATTCA ACCC TCGATTGCCA           TTAGTTAGTAATTGG  52 452
D3880_RS22610  861659 ..  861673 +  -2.8  -3.91897   GAGTGACTGGAGTTC               TCTTGG AGT TCAAGG               TTTCTGACTGCGGCC  54 220
D3880_RS03985  862247 ..  862260 +  -8.1   -3.8591   AGTACTCCTCGCACT               GGGCA TAGC TGCCC                TTATTGGTTATCGGG  69 246
D3880_RS23020 NONE
D3880_RS03990  863548 ..  863567 +  -4.2  -3.59979   ACCGTTTGCCAAGGC            TTGGGGCG CTGC CATCCCAA             TTTGAGCTGAGGCAG  54 100
D3880_RS22615  863916 ..  863934 +  -7.5  -3.21695   GAGAAGGAGATTTGA             TTGAGTG CTGAC CACTCAA             TTGCATTCGTGCTGA  54 26
D3880_RS03995 NONE
D3880_RS22620 NONE
D3880_RS04000  867695 ..  867720 +  -3.3  -3.64103   GGGCGAGAGCGAGCT         TGGCCTTAA CCAAGACT TAAAGGCCA          TTTCCGCTCTCGGTC  51 125
D3880_RS04025  873005 ..  873016 +  -3.6  -3.73224   TTAAAGCCAGCGCGC                TGGC CGTC GCCG                 TTTGCTCGGCAATGG  54 183
D3880_RS04030 NONE
D3880_RS04035  876290 ..  876305 +  -3.2  -2.64616   CAAACGGTATTGGTT              ATTGGC GGCA GCCAAA               TCATCTACGTCCCAC  40 105
D3880_RS04040 NONE
D3880_RS04045 NONE
D3880_RS04050 NONE
D3880_RS04055 NONE
D3880_RS04060  880738 ..  880760 +  -6.9  -3.40522   GCGGTCACCACATGA           TGCGCCAGC CAGAA GCTGACGCG           TTCTCCTGCCCAGGT  56 259
D3880_RS04065  882187 ..  882206 +  -4.2  -3.72893   GAACCAGTGTGCGGA            CGTTGCTC CGGG GAGCAGCA             TTTGCTCGCAGAGTG  57 279
D3880_RS04070  883673 ..  883703 + -14.9  -3.25823   AGTCTGCCGCAGCGG       GGCTTCATGTCTT CGCCA AGGACATGAAGCC       TTGATCTCAGCAGAG  82 40
D3880_RS04075  885861 ..  885876 +  -4.6  -3.89346   CTTTCTGGCGGAGGG              CGGCAA GGTC TGGCCG               TTTATAGGGTGGACA  59 235
D3880_RS04115  894728 ..  894763 +  -9.6  -2.57881   CAGCTGCAGCGCTTC    GCCGAGGACCTTCACCG ACT CGGTGT-GGTCGCCGGC    CTTGTGCAGCGCTTC  54 69
D3880_RS04145  902846 ..  902877 +  -3.6  -5.18726   CCAGGCCGGCCTCGT      AGCGCTGCTCGA CGAAATAA TCGTGCAGTGCC       TTTTTGTTCTGCGCG  83 427
D3880_RS04155 NONE
D3880_RS04160  903871 ..  903889 + -13.1  -5.06414   TTCAGGTACAAAAAA             GCCCGGC ACTTG GCCGGGC             TTTTTATTGGCAGGG 100 45
         fur  904973 ..  904989 + -13.7  -5.18355   GCGGACAAATAAAAA              GGCGACC TCG GGTCGCC              TTTTTGCTTTTTACG 100 58
        grpE NONE
        dnaK  909477 ..  909507 + -20.5   -2.9294   GCGGCGGGCACGATT      CGCCG-CGCGGGAG CCTT CTCCCGCGTCGGCG       TATCTGGATGATGTG  95 72
        dnaJ NONE
        dapB  911602 ..  911630 + -15.3  -5.07567   GAATCAAATAAAAAA        GCGGGGTGACGGT TCG AACGTCATCCCGC        TTTTTTACAATCTGC 100 133
        carA NONE
        carB NONE
        greA NONE
D3880_RS04215  917106 ..  917116 +  -8.2  -3.04144   AGAGCTCGCTGATGA                 CCGC CAG GCGG                 TCTTCACGCTCGGCA  55 174
        ftsH NONE
        folP NONE
        glmM  922325 ..  922339 +  -7.8  -2.69151   GAACGGCTTGCTAGT               CCCAGG GCT CTTGGG               TAATATCTGCGCCCA  53 39
        tpiA NONE
        secG NONE
D3880_RS04255  923626 ..  923649 + -16.8  -3.61517   GGTACCAATTAACAA          GAAAGCCCGC GATT GCGGGCTTTC           TTGTTGGCAGGGGGT 100 34
D3880_RS04260  923802 ..  923817 + -10.4  -5.10461   ACCAGTTGTAGCGGA              GCCCCT TTTT AGGGGC               TTTTTGTTAGCTGGA 100 37
        rimP  924382 ..  924400 +    -3  -2.52464   AGTTTTGACTGAGAC             GCGGATCC CGC GGATCCAA             TGGATTGCGAAAGGC  37 29
        nusA  925885 ..  925904 +  -5.6  -2.64472   AGTTGATCATGGCCG            CCCGAGCC CACT GGTTCGAG             TAAGTTTGCGGCCTG  46 3
        infB  928447 ..  928475 +   -16  -3.62591   AGCCGTAAGACGCAA       CGCCCGGTCCGGC TTCC GCTGG-CCGGGCG        TTTGCCGCTTCTAAA  93 47
        rbfA NONE
        truB  929882 ..  929895 +  -2.3  -3.01712   TTCGTCCGCTTGCGG               GCAAC GAGG GTGGC                TGTTGGCAGGCACGG  41 58
        rpsO  930262 ..  930320 + -12.4   -3.5616   CGACCTGAGTTGGAA GCTGGGAGTTTGTTGCTGGAAGTCGGGT TTC ACCGGGCTTCTGGTTGCGGGCTTCCAGC TTCTGGCTTTTTGCC  79 45
         pnp  932556 ..  932575 +   -15  -6.07627   AGGCTAGCCAGAAAA            GAGGGCCC TCGT GGGCCCTC             TTTTTTTTTGCCCGT 100 50
D3880_RS04300  934228 ..  934249 +  -2.9  -5.00616   TTAGTCCCTATGCGA           CTGTTGCCAG GAC CCGGCG-CAG           TTTTTTCAAGAAAAC  75 199
D3880_RS04305 NONE
D3880_RS23030  934892 ..  934913 +   -13  -4.84527   CACGCAGCACAGCAA           CCCACCGG CTTGTC CCGGTGGG            TTTTTCGTCTATGGA 100 45
D3880_RS04405 NONE
        sfsA  960402 ..  960433 +  -4.3  -3.05816   GTAGCCCGGAGGCAA      TCCGGGGGCATGG CGGTAT CGGTTTCCCCGGA       TTGCATCCGGGCTAC  46 37
D3880_RS04425 NONE
D3880_RS04430  965145 ..  965174 + -18.6  -3.57615   GCGTCGTCCTTCCTG       CCGGCCCGG-GCC TAAAT GGCGCCGGGCCGG       TTTACCGAATCTTGC 100 82
D3880_RS04435  966117 ..  966130 +  -2.3  -3.92522   TGAGGCCCGTCCTAA               CACCG CGCG CGCTG                TTTATCGCATTGGGC  54 38
D3880_RS04440 NONE
D3880_RS04445  967940 ..  967951 +  -2.2  -2.54803   ATCCCCACTCTAGAG                GTAC TCCT GTGC                 GTCTTGCTCTGTTGC  38 60
D3880_RS04450  968841 ..  968860 + -16.4  -4.63218   AGCCACTCAAAGATT            GGCCGCCC GCGT GGGCGGCC             TTTTCTTGCGGGCAA 100 40
        mrcB NONE
D3880_RS04475 NONE
D3880_RS04480  975903 ..  975928 +  -8.3  -3.87994   GGTTGCGAGCCGAAG         TGGGTCG-TGCC TTT GTCATCGACCCA         TTTGTAAACCTGGCT  68 373
D3880_RS04490 NONE
        ilvN NONE
        ilvC  979722 ..  979737 + -11.8  -5.32944   TCGATGGGGAGAAAA              CGCGGC TTAG GCCGCG               TTTTTTCATTCTGCG 100 48
        pssA  980679 ..  980689 +  -2.4  -2.87132   GATGTAATTTCCCTC                 CGGC TCC GCAG                 TCTATAACGCACACC  40 39
        msrP NONE
        msrQ  982763 ..  982780 +  -2.6  -4.46233   CAGCATCACAAGTAA             CACTCG TGAATT CGAGAG              TTTATTTGCGATTGC  66 430
D3880_RS04525  984438 ..  984479 +  -2.3  -2.60075   CTTGCGAAAAGCGAT TGGGTT-TAGACCCGAGAGT GAG ACGATTGGGTCTGTAGCTCA GTTGGTTAGAGCGCA  38 91
D3880_RS04530 NONE
D3880_RS04535  984669 ..  984711 +  -3.5  -3.54543   ACGCAATCGCTGAAA GCTCAGAATTGAATGCTTA AAGAG TGAGCCTTGAATTCTGGTC TTTGCGCCAGTAACT  49 46
D3880_RS04540  987787 ..  987800 +  -5.3  -2.74192   CATATAACACCCAAA               CAATC TGAC GATTG                TGGTGTTGGACGGTG  46 38
         rrf  988048 ..  988083 + -23.4  -3.34398   GTCAAGCTCCTATCC    CAAACCCCCAGCCCGC GACA GCAGGCTGGGGGTTTG     TCTTTGCGCGCGGGG 100 34
D3880_RS04550 NONE
D3880_RS04555 NONE
D3880_RS04560  991772 ..  991799 + -17.1  -5.24129   GCCAGGCAAGAAAAA        CGCCGCTTACC GAGAAA GGTAAGCGGCG         TTTTTTATGGCGCCC 100 66
D3880_RS04580 NONE
D3880_RS04585 NONE
D3880_RS04590 NONE
D3880_RS04595 1002247 .. 1002257 +  -2.4  -3.53343   TGACGTCATCCTTCC                 CGGC CAC GGCG                 TTTCCCGCCACAATT  47 64
D3880_RS04600 NONE
        rimI 1003568 .. 1003582 +  -5.6  -3.33696   TTGACCACTAAGCCG               CGCGGC GCC GTTGCG               TTCATTCGGGCAGCG  52 37
D3880_RS04615 1005494 .. 1005545 +  -5.1  -3.29471   TCTTGGCGCTGGATT GAATGCGCTGCTGTGAC--GCTTGC GGCG GCCGGCTTGTCAAAGCAGCGCACCC TTCGTATGGTGCGCC  49 24
         can 1006242 .. 1006284 + -10.4  -2.78384   CGGATGCCCCTGAAG GACTCGCCGGCTTGGGCCTG GGC CGGGCTGGTGCTGGCCAGTC TGTGCTGGGCCGGCA  61 41
        hemA NONE
        prfA NONE
        prmC NONE
D3880_RS04700 NONE
        murI 1019714 .. 1019729 +  -7.6  -3.54307   TTTGCGGGATATAGG              CGATAG TCGA CTATCG               TTTAGAGCGAATCTT  62 47
D3880_RS04710 1020539 .. 1020555 +  -7.2  -5.24129   AGCCCCCATAAACAA              CCGGGT CAAGA GCCCGG              TTTTTTATGGGGGCG  93 246
D3880_RS04725 NONE
        hemH 1024192 .. 1024221 +  -7.1  -3.14132   TAAACTGGCTGAGGG       TGCCAGCGGCAGTC TGT GACTGCCGG-GTCA       TTCGTGCGAGGGCAG  54 7
D3880_RS04735 1025775 .. 1025791 + -15.1  -5.37345   GGCCCCGAACGAAAA              GCCCCGC AGT GCGGGGC              TTTTTTGTCGTTGCG 100 45
D3880_RS04750 NONE
D3880_RS04755 1029301 .. 1029318 +    -4  -4.56597   TTCCGGGTTGAAGCG             GCGCAG CACGCT CAGCGC              TTTTTCCGCGGCGCC  70 289
D3880_RS04765 1031394 .. 1031407 +  -2.3  -3.33492   GGGCGTGGGGGTAAA               CTGCG CGCC CGAAG                TTATCCGGTCAGTGG  44 50
D3880_RS04770 1031743 .. 1031762 + -12.1  -4.98531   CAATTCCTTTAAAAA            GCCCGCG CATAGC CGCGGGC             TTTTTGCTTTACGGC 100 45
D3880_RS04775 1032247 .. 1032262 + -11.8  -5.63517   GCAGGCATAAAAAAA              CCGCCC AGGA GGGCGG               TTTTTTATTTCAGCG 100 46
D3880_RS04790 1035133 .. 1035149 + -10.1  -5.28176   GCGCCTTACGAAAAA              GCCTGGT TTG ACCGGGC              TTTTTTGTGCATGAA 100 47
D3880_RS04800 1036044 .. 1036063 +   -15  -4.27316   TCGCGCAGACAAGAA            CGGCGACC CGAG GGTCGCCG             TTTTGCGTTAGAACC 100 192
D3880_RS04810 NONE
D3880_RS04815 1037811 .. 1037832 +  -6.5  -3.48657   CGGCGTGCTGCTCTG           CTGA-GGCCG TTC CGGCCATCCG           TCTTTCCCTGTTTAG  58 22
D3880_RS04820 1038726 .. 1038742 +  -6.5  -2.81547   CGGTCGACTGGCGGC              GGCCTAG CAT CTAGTCC              TCGTTCATCTGGAGA  50 269
D3880_RS04825 1039570 .. 1039597 +  -5.4  -2.89564   GCCGTTGTACGAGCA        GGCCAAAGGCCA TCAA TGACCGCTGGCC         TATCTAGAGTGGCCG  48 7
D3880_RS04830 1040765 .. 1040777 +  -9.1  -3.19157   GCTCACCCTTCGGGC                CAGCC TGC GGCTG                TTACTCCCGTTGGTC  61 151
D3880_RS04860 NONE
D3880_RS04865 1048885 .. 1048897 +  -7.7  -2.90941   GCGAGACGTTGAACA                GGTTC TAA GAACC                TGTCTACGATCTGCT  55 286
D3880_RS04880 NONE
D3880_RS04885 1054799 .. 1054816 + -14.1  -4.93696   GGATAAAAACAAAAA             GCCCCGC ATCG GCGGGGC              TTTTTGGTCTTTACG 100 311
D3880_RS04895 1057975 .. 1057988 +  -2.3  -4.07568   TTGGTCTAGGGTTAG               CCCTG GGCA TGGGG                TTTTAACCCGCGGGC  57 120
D3880_RS04900 NONE
D3880_RS04905 1061464 .. 1061479 + -11.8   -5.4833   CCGCGTGTGTTTTAA              CCGGCC TTCG GGCCGG               TTTTTTATTGCCTGC 100 50
D3880_RS04910 1064397 .. 1064415 +  -5.2  -3.14468   CCCTACAGCTTCTCC             GGCACGCT CAG AGCCTGTC             TTGGATCTGCTGCGC  48 116
D3880_RS04920 1067003 .. 1067024 + -10.9  -3.59979   ATACCAGCCAGGAAT           C-GGTGCTGC TGG GCAGCACCAG           TTTCACGTCGACGCC  70 438
D3880_RS04940 1070781 .. 1070791 +  -4.6  -3.72695   GGCCTGCGGCTCGAA                 CTCG ACG CGGG                 TTTGGTGCAGCAACT  55 113
D3880_RS04950 1073175 .. 1073185 +  -2.4  -3.44051   GGCGGTACTGCTCGA                 CCAG CTG CAGG                 TTGTCGTGCTGCCAG  46 164
D3880_RS04960 1075497 .. 1075509 +  -3.3  -3.57144   CAATCCCAGGCGAGT                GCGTC GCC GACGA                TTTCCACCTCGCCCA  49 385
D3880_RS04980 1077638 .. 1077668 +  -2.4   -4.2679   CACCAGCATCGGGGT       TGGATTCCACCAGC ATC GGGGTTGGATTCCA       TTTTAATCGGGGTTG  60 68
D3880_RS04990 NONE
D3880_RS04995 NONE
D3880_RS05000 1084977 .. 1084994 +  -2.7  -3.37612   CTGGGACGAGCAAGA             TCTGAAA TTGA TATCAGA              TTACTTAAGATTCGA  44 380
D3880_RS05010 NONE
D3880_RS05015 1088084 .. 1088101 + -14.1  -4.72272   GGGGAGCACAAAAAA             GCCCGCC GATT GGCGGGC              TTTTTCATGGGCGCG 100 108
D3880_RS05040 1093417 .. 1093432 + -11.8  -5.26918   TGAGTTCACTGGAAA              GGCGCC CACG GGCGCC               TTTTTTGTCCGCTAT 100 55
D3880_RS05045 1093941 .. 1093983 +  -7.7  -4.07568   AGAAGGCCCTCGGCT GATCGACGTTTCCGGCCGGCG CAA TGCCGGCCGGAA-C-TAGGCC TTTTGCGCCAAAACC  71 24
D3880_RS05050 1094876 .. 1094904 +  -8.1  -2.64218   GTGCGCTTGGATTGT        CCGCGTGCC GACTTCCACAA GGCGCGCGG        CTTCTGATCCGCAAT  52 86
D3880_RS05055 NONE
D3880_RS05060 1096776 .. 1096794 + -13.1  -5.96219   GCGTACCTGCTTCTG             GCCCCGG CGATC CCGGGGC             TTTTTTTTATGGCTG 100 73
D3880_RS05070 1100443 .. 1100461 + -13.1  -4.10188   CGCGGCTTGCTCCGT             GCCCCGG CGATC CCGGGGC             TTGTTTATGGCTATG  89 50
D3880_RS05085 1104525 .. 1104540 +  -6.8  -2.78384   GCCCAGCGCCTGGCT              G-GCGGC TGA GCCGCGC              TGTCCTGAGCGGCGC  50 17
D3880_RS05090 1105345 .. 1105373 +    -8  -2.54896   CCGCATGAGGTAGAG       CGGACGCGCCGCC TCGC GGCAGCCCG-CCG        TAACTTCGCTAAGCC  52 55
D3880_RS05095 1106160 .. 1106178 + -12.4  -2.70979   TTCTGGCTGATTCAG             GCGCGGAT TTG GTCCGCGC             TGCCTTTCCTTGGCG  69 136
D3880_RS05120 1111955 .. 1111993 +  -4.5  -4.09117   ATGCTGCGCTCGGCG  CCGCCGCTCTG-ATTGCT CGCT GGCAAGGCAGGACGGTGG   TTATTTCTGGGTGAC  61 14
D3880_RS05125 1114024 .. 1114040 +    -3  -4.63932   GCTTTCCGTTGGCTT             GCGTCTT CTCA AAG-CGC              TTTTCTTCAGCACTC  71 484
D3880_RS05160 1122034 .. 1122069 + -14.1  -3.71848   TCGAAAGCTGCAAGT    CCGAAGCGTCCGCTTC GGCCA GAAGCGGACGCT-CGC    TTCTTACTGAAAACC  91 80
D3880_RS05170 1123178 .. 1123205 +  -4.8  -3.14132   TCTGGCTGCTCGCCA        CTGGCAAC-TTCG GGG CGATCGCTGCCAG        TTGGTGGACAAGCAA  48 122
D3880_RS22635 1123874 .. 1123884 +  -8.2  -3.53012   TCTAGGGTGGAAAAC                 CCGC GAA GCGG                 TTTCCCACCGAGAGA  62 460
D3880_RS05195 1127648 .. 1127674 +  -7.8  -3.53012   CCTGTGATTCGCCGG         CGGGCCAGCGCG GCC CGCCCTTACCCG         TTTACGGGGCCACCG  62 34
        trxB 1128734 .. 1128752 + -13.1  -5.06414   AGCGCCTAACAAAAA             GCCCCGC CTAGA GCGGGGC             TTTTTGTTGGGCAAG 100 46
D3880_RS05235 NONE
D3880_RS05240 1133801 .. 1133843 +  -8.2  -2.52464   AGGCAGGCGACGCCG GGGCGCAGCAGGCCGCGCG CCACCA CGCGCGGCA-GCAGCACCG TGCCTTGGCCGGCGG  51 238
D3880_RS05250 NONE
D3880_RS05255 NONE
D3880_RS05260 NONE
D3880_RS05265 1137791 .. 1137819 +  -6.5  -3.36175   GCTAACCTACGAAAG        GCAGCGGCGTTGC CCT GTATCGCCGCACC        TTATCGACCTTTATT  56 198
D3880_RS05270 1138855 .. 1138874 + -11.4  -5.56263   GGCGTGCTTCCGAAA            GGCCGGCT CTTT AGTCGGCC             TTTTTGTTTTATGGT 100 47
D3880_RS05275 1139666 .. 1139678 + -10.5  -3.64822   CAAGGGCGGAGAGGG                GCGGC ACG GCCGC                TTTGAGTGAGAGCCT  73 4
D3880_RS05280 NONE
D3880_RS05285 1143756 .. 1143773 + -12.7  -5.72622   GAGGGGTTCGAAAAA             GGCGACC GCAA GGTCGCC              TTTTTTATTTCTGGA 100 47
D3880_RS05290 1146518 .. 1146530 +  -6.9  -2.87581   GCCCCCGACCTATTG                CGCCG CTC TGGCG                TGCTGTTTGACTTGC  51 60
D3880_RS22640 1147027 .. 1147045 +  -6.6  -3.21276   TGATTGCGATGGCTC             GCGTTCTG CCT CGGCACGC             TCTTCTGAGAGGAAA  54 52
D3880_RS05295 1148454 .. 1148471 + -12.7  -5.24129   GAGCTAAGTTGAAAA             GGCGACC TGCG GGTCGCC              TTTTTTATGGGCGGC 100 47
D3880_RS05300 1151295 .. 1151329 +  -5.4  -2.70932   CCAGGTGGTCGAGCG     CGGTGGGCGGGCCGAG TTG CAGGACCCGCTCGGCG     TCCTTCAGCGCGGCG  45 164
D3880_RS05310 NONE
        pdhA NONE
D3880_RS05320 1155493 .. 1155505 +  -9.1  -2.71263   CCCATTCATGGAGGG                CGGGT GCA ACCCG                TCGTTGAGCACGGTT  57 42
D3880_RS05325 1156924 .. 1156970 +  -3.5  -3.23853   TGAAGGCCTTGGCGA GCAGGTCGCGGTGTTTGGC CAGGTAGAT GCCGACTTCCTCGCCCTGC TGTTCGTTCAGCGAC  47 283
D3880_RS05350 1161630 .. 1161667 + -12.6  -3.39908   CAGTTGCCGGTTGAT   CTGCTCAGCCGGGCGC TGTTCT GCGCCTGGCGGGGTGG    TGTCTTTTCCCGCGC  76 79
D3880_RS05360 1162623 .. 1162635 +  -3.3  -4.25104   TTGCCTTGCCTGACC                TTCGC TCG GCGAC                TTTTCGTACAGAACC  62 213
D3880_RS05375 1165422 .. 1165440 +    -3  -4.25104   CGATGTCCCAGTTCC             GTGTCGCC TGG GGTGGTGC             TTTTGGTAGGAGCGG  60 90
D3880_RS05380 NONE
D3880_RS05385 NONE
D3880_RS05390 1167863 .. 1167880 +  -3.3  -3.71848   AAATGGGGCAATTGC             CG-CTGCG TTG CGCCGTCG             TTGTTCGTCGGCGGG  54 60
D3880_RS05395 1168311 .. 1168324 +  -2.3  -5.00616   ACACTGAGCGGCAGG               CCAGG GCTC CCTGA                TTTTTTGCGCGCGCG  75 34
D3880_RS05400 NONE
D3880_RS05405 1170246 .. 1170287 +  -3.6  -4.37886   CGGCCTAACGAATCG CCGCCTCGGCCGCCAGCTGC TTGC GCAGTT--CGGCCTTGGCGA TTTTCTCCAGGGTCA  65 339
D3880_RS05420 1174326 .. 1174351 +  -8.3  -2.57132   ACCAGATCGCGCGGG         C-GCTCGCCG GCCAGTG CGGCGAGCAG         GTTGTCCACGGCGCG  52 261
D3880_RS05620 1223656 .. 1223667 +  -2.2  -3.51708   ATGTACCTTGGCGCG                TCAG GGCC CTGG                 TTCGTTTGGACCATG  47 59
D3880_RS05625 1225454 .. 1225489 + -23.4  -5.31877   TGAGAAGCTTCTCAA    CGCCGTGACCGATCCG TAGA TGGATCGGTCGCGGCG     TTTTTTCTGGTGGCT 100 135
        dmeF 1226771 .. 1226793 + -11.2  -2.53263   GCGGCCTCTCCGCGG           CGGAGCGCCG TTA CGGCATTCCG           TCGCTTGGCCCTACC  64 247
D3880_RS05635 1228284 .. 1228319 +  -9.7   -4.9792   CTCTTCCCCGTATCC   TCGCACCGCCGGACGGC ACTC GCCGCCCGGC-GT-CGG    TTTTTGTATACAATC 100 94
        moaC NONE
D3880_RS05645 NONE
        moaE 1229871 .. 1229884 +  -2.3  -4.36914   ATGATCACTCAGCGC               CAGCT ATCC AGCCG                TTTTCTCCGCCAGCC  63 339
D3880_RS05655 1230791 .. 1230826 + -18.6  -3.55444   CTGATCGTCGTTACG    CAG-AAAAAAGCCGTGC ATT GCACGGCTTTTTTGCTG    TTTGGGGCATCAGGC 100 37
D3880_RS05680 1234468 .. 1234493 +  -5.5  -2.78384   TCAATCTGCTGACCC         TGGAGCAGTG AGCCAAG CACTGC-CCA         TCTGCTGAACGAGAA  46 15
D3880_RS05685 NONE
D3880_RS05690 NONE
D3880_RS05695 NONE
        lysA 1238324 .. 1238339 +  -7.5  -2.87344   TGTTGCCCCCGGAGT              GGCCG ATATGA CGGCC               TGTCTGGGAGAGCTA  51 100
D3880_RS05705 1239576 .. 1239593 +  -5.5  -3.27525   CAGCATGGCGCAGGC             CTGGTCG GCGT CGAGCAG              TTGCATTTCGGGCAC  52 287
D3880_RS05745 1250296 .. 1250328 + -21.3  -3.18912   GGTGCGTTGACCATC      TGCCTCGGCGCCGCG TCC TGCGGCGTCGAGGCG      TTCCTGACTCGCTGA 100 31
D3880_RS05750 NONE
D3880_RS05755 NONE
D3880_RS05760 1253502 .. 1253547 + -12.4   -3.1355   AGCGACGATACCCAA CGGACGGAGTTGACCGCGGC TTTGGC GCCTGGGTCGCCGCCGTCCG TTGGGTATCGCTGCG  74 82
D3880_RS05765 1254390 .. 1254413 +  -2.4  -3.09288   ACCCACCCTACGACC          TTGTCAGGCTA AAC TCGCC-GACGA          CTTTCTTGCAGGATG  41 88
D3880_RS05770 NONE
D3880_RS05775 NONE
D3880_RS05780 1256713 .. 1256724 +  -7.2  -3.76402   CGGCATCGGGAAAAC                CGCC GGGC GGCG                 TTTCGTAGATCACCT  64 305
D3880_RS05805 NONE
        sbcD NONE
D3880_RS05815 1266748 .. 1266760 +  -2.6  -2.57795   GGATGGGTGCTTTGC                CGTG GCCGG CGCG                TAGATTGATCGTGAA  38 10
D3880_RS05820 1267359 .. 1267389 +    -9  -3.78934   AGCGAAAACTCAGTT       CCAGCGCTGC TTGCGCCAGGC GCGGCGCTGG       TTCTTGTCGAGGAAG  71 40
        lptF 1276423 .. 1276434 +  -2.2  -2.79188   CCGCCGTGCGGCGCG                TGGG GTGA TCCA                 TGGTTAAGTTGGATC  39 7
        lptG 1277516 .. 1277532 + -11.5  -5.10877   GGTGAAATAAAAAAA              GCCGGCG CAA TGCCGGC              TTTTTCATTTCTTAT 100 46
        queA 1279901 .. 1279912 +  -3.6  -3.00476   AGGAAAAAGCATGAC                CGGT AGCT GCCG                 TATGTCCTTCGAGCT  43 27
         tgt NONE
        yajC 1281428 .. 1281448 + -18.3  -2.78384   ATTATTAATAATCGA            CGGGGCGCT ATA AGCGCCCCG            TGTCATAAGCGGGCG  86 48
        secD NONE
        secF 1284284 .. 1284295 +  -2.2  -2.96873   TTCAATATTGTGATC                TTGC TCTT GCAG                 TGGTTTGCTGGCGGT  40 48
D3880_RS05915 1284958 .. 1284993 + -22.2  -3.05384   CGCAGTAATACACTG    CCAATAAAAAACGCCC TTCG GGGCGTTTTTTATTGG     TTGGATCCGCAGGGC 100 33
        trmJ NONE
        cysE 1287533 .. 1287561 +  -6.7  -4.08945   CGGCTTGATGCGCTT       GGGTGCGCGCTC TGCTAT GA-TGCGCGCCC        TTTTCCAGGGCTAAT  68 33
        iscR NONE
D3880_RS05945 NONE
        iscU NONE
        iscA NONE
        hscB NONE
        hscA NONE
         fdx NONE
        iscX 1293232 .. 1293250 +  -6.6  -4.34557   CGCATTTAACCGGAA             CCCGCGTA TAA TTTGCGGG             TTTAATTTTTCGCTT  74 69
         ndk NONE
        rlmN NONE
        pilW NONE
D3880_RS05995 NONE
        ispG 1297806 .. 1297827 +  -2.1   -3.3269   CGCGGCACTGATTGC           CCGTGGCTG ATGA CTGCTAAGG            ATTTTCTGTGAGTAA  44 16
        hisS NONE
D3880_RS06010 NONE
        bamB 1300947 .. 1300984 + -12.7    -4.614   TAAGCTGGGTTCTAG   TGT-CCGGCCGCTGCCGT TTC ACGGCAGCGGCCGTTGTG   TTTTCTGTAATTGAC 100 38
         der 1302506 .. 1302531 + -16.9  -4.82154   GGCGACACCTGAAAA         GGCGCAGAGGC TTAA GCTTCTGCGCC          TTTTTCATATCCGTT 100 50
D3880_RS06025 NONE
D3880_RS06030 1304750 .. 1304774 + -15.8   -4.8622   CTACAAAAGCAAAAA          GCCGCTTACC CGAAA GGTAAGCGGC          TTTTTCGTTGCCAGG 100 104
D3880_RS06050 1309844 .. 1309856 +  -3.3  -4.25104   TTGCCTTGCCTGACC                TTCGC TCG GCGAC                TTTTCGTACAAAACC  62 138
        guaB 1311482 .. 1311512 + -16.9  -3.97636   GCAGTTGAGATAAAG       AGACACGGGGCTG CTATT CAGCCCCGTGTCA       TTTGTGAATTCCGCT 100 47
        guaA 1313134 .. 1313151 + -12.7  -3.41602   TGATCTGAACGACAA             GGGCAGC CATG GCTGCCC              TTGTCGTAGGGTGGA  76 38
D3880_RS06070 1314740 .. 1314750 +  -2.4  -4.09685   GTTTTCTGGTGGAAA                 ACGC TTC GCGG                 TTTTCCACCCTACGG  57 69
        tadA 1315522 .. 1315567 + -14.7  -3.21276   TTCGGGTCGAGGCCC TCGGCCTCGGCCAGCTTGCGCG CGT CGCCCAGG-TGGGCGATGCCGA TGTTGTAGGCGGCCA  76 293
        purL 1320788 .. 1320800 + -10.5  -3.41229   GGGTCGACTAAGAGC                CGGCC AGA GGCCG                TTCTGCTGACCCTCT  68 30
D3880_RS06090 1321196 .. 1321206 +  -6.8  -3.06831   AAGTGGCAGCGTTTC                 TGGC TAG GCCA                 TTAACTGCCGGTTGG  52 11
D3880_RS06095 1321719 .. 1321734 + -11.8  -5.28176   GGCTTGCAGAAAAAA              GGCGCC AAGC GGCGCC               TTTTTTGTCGCTCGC 100 43
D3880_RS06110 NONE
D3880_RS06115 NONE
D3880_RS06120 1324354 .. 1324364 +  -4.6  -3.19602   TCATGAGCGGGCCAA                 GGTC AAA GGCC                 TGTTGCTCTAGCGGC  48 4
        purT NONE
D3880_RS06130 1326531 .. 1326563 +    -9  -3.17075   TTGAGGGTTTTCGGT     CCGT-CGCAGGGCAG TTGC CAGCCCAGCGCGCGG      TTCAATTCGCGCAGG  61 210
         ffh 1329570 .. 1329582 +  -6.9  -2.62616   ATCCTTAGAATATGC                GGCCT TTC GGGCC                TAGTGTCCGGCATGA  49 72
        rpsP NONE
        rimM NONE
        trmD 1331218 .. 1331233 +    -6  -3.01712   TTAACGTATCGATGG              CGGGCC CAAT GGCCGG               TCTTAGGAGCACAGC  49 37
        rplS 1331615 .. 1331646 +   -19  -3.96624   TCGCCATTTCCGCAA      TGAAAAAAGCAGCC TTCT GGCTGCTTTTTTCA       TTTCTGCTGCGAGTA 100 41
        xerD 1335361 .. 1335379 +  -2.3  -2.94747   CCGTCCGACCTGCTG             TGATCGG CCAAT CCGGGCA             TCTGTGGTAGGCTGC  40 74
D3880_RS06185 1336227 .. 1336247 + -18.3  -4.09685   CTCCTTGAATATTCA            CGGCCGAGC ATC GCTCGGCCG            TTTTACGCAGTGCAG 100 92
D3880_RS06190 NONE
        thrC 1339027 .. 1339046 + -13.6  -5.38054   GTAACCCAACAAAAA            GGCCAGCT ATCA AGCTGGCC             TTTTTGTTTGTGCGG 100 50
D3880_RS06215 NONE
D3880_RS06220 1344109 .. 1344120 +  -3.6  -3.84246   GTGGCTGCACGGCGA                GCGT TGAG GCGC                 TTTGATCGTTCCCAC  54 19
        recJ 1345998 .. 1346009 +  -7.2  -3.31196   TAAATCCCCTGCGCC                GGGC CGCG GCCC                 TTCCTGTACCTTTGG  56 45
D3880_RS06230 1347308 .. 1347328 +  -3.1  -3.80573   CCACTGGAAGGCGAT            GCCGTCGGC GCT GACGATGGG            TTTGCTGGTCATCAG  56 479
D3880_RS06240 1349017 .. 1349031 +  -5.6  -3.64703   AGCCGGACAGCTTCA               TGCCGC CGT GGGGCA               TTTCGCTGACCAGCA  57 426
D3880_RS06285 1358165 .. 1358179 +  -7.8  -3.86015   AGCCAGGCCCGGCAG               GCGCTG CAA TAGCGC               TTTGTAGCCCGCGTG  69 14
D3880_RS06290 NONE
D3880_RS06295 1360227 .. 1360261 + -10.1  -3.05596   TTGAGGCGCGTAGCG    ACGATACCCATCGAGT CGAT GC-CGATGGGTATCGC     TTCGCTCAACCCATC  64 71
        prfB 1361556 .. 1361572 +  -9.3  -3.04461   GCATTTGCGTAGGAG              GCCGGCC CCG GGCCGGA              TGTTGGGCATCGCTG  60 94
        lysS 1363155 .. 1363170 + -11.8  -4.44667   AACCACAACAATAGA              GCCGCC TACG GGCGGC               TTTATTGTTGGCGCC  95 48
D3880_RS06310 1364028 .. 1364043 + -11.8  -4.55023   GAGGCCTCTGACGAA              CCCCGC GGCT GCGGGG               TTTTGTCATATTGAC  95 39
D3880_RS06315 NONE
D3880_RS06320 1366086 .. 1366112 +    -5  -3.72576   GCGTGAGGTCCGTAG         GATGGGTTGAGC GCA GCGATACCCATC         TTTCGTCGCCGGAAC  57 42
D3880_RS06325 NONE
D3880_RS06330 1367803 .. 1367814 +  -3.6  -4.64676   CTCTTGTGGGTCAGG                CGTC CTTT GGCG                 TTTTGTTCCCAATGG  73 381
         ppc 1370709 .. 1370719 +  -5.4  -2.60257   AGCGGCGCTTGACCA                 CCTA CTT TAGG                 TGACTTGTGCGCTAT  46 39
         adk 1371658 .. 1371688 + -15.5  -3.96148   AACAGGTTCTGCACC      TGTCCAACGGCCCG CTTG CGGGCCGTTGG-CG       TTTATAATGCCCGCC  95 184
        tsaB 1372471 .. 1372498 +  -4.8  -2.74144   TGCCGGGTGTTAGTG        CTGATCAGGCTGC CGG GCAGCCCAA-CAG        GTTTGCGAATGCGCA  43 92
D3880_RS06355 NONE
D3880_RS06360 1373879 .. 1373893 +  -2.7  -3.53031   TTTTTTGTCGCGGTG               CGTCG TTGCT CGTCG               TTCATTTGGAATGCC  47 200
D3880_RS06365 1375029 .. 1375041 +  -9.1   -3.1886   GCTCGCCCTGCGGGC                CAGCC TGC GGCTG                TTACTCCGCTTCGCT  61 206
D3880_RS06370 1376828 .. 1376844 +  -2.1  -3.60792   CCGGCCGGCGCCGTG              GCTGCAG GAG CAGAAGC              TTTCCGGGTTGCCGA  48 252
D3880_RS06380 1379061 .. 1379081 +  -2.4  -3.14132   CCGCAGCCGCACATC            AGGCGGAA GTTGA TGCCGCCC            TTGATCAAACAGAAG  42 355
D3880_RS06390 NONE
D3880_RS06395 1383909 .. 1383926 + -10.5  -5.28176   CTCGGCGATAAGAAA             CCCGGCT GGCA GGCCGGG              TTTTTTATGCCTGCC 100 48
        wecB NONE
        nrfB NONE
D3880_RS06410 1390511 .. 1390544 +  -4.6  -2.76313   GGCCGATGGCTGGCT    GCTGG-GCGTC-GAGG TGAA CTTCTGATGCGCCGGC     TACTGTTCGGCTTGT  43 1
D3880_RS06415 1391553 .. 1391569 +  -7.2  -3.69621   AACTCGGCGAAATGC              CGCTCG ATCAG CGGGCG              TTTGAGCTTCTGGGT  61 204
D3880_RS06430 1394993 .. 1395027 + -11.5  -2.55074   GCCTTGGCGCCGCTC    TGATCGGTAGCCCGGA TGCC TCCGGGCTA-CGACCG     TAGGTTGGCGTTGAG  64 23
D3880_RS06435 1396368 .. 1396394 +  -2.2  -2.60508   TGCTGCCGGGCGGCA         GCGGGGATGC TGGCCAC GTATACTCGC         CGTTTTTCGCGAGTC  38 47
D3880_RS06440 1397052 .. 1397071 +  -4.2  -3.05596   AACTGCGCGCCGCTG            TCCATCCC GGGC GGAATGGG             TTCCCTAACCCCATC  46 194
D3880_RS06445 1398105 .. 1398162 + -11.1  -3.78034   CAGTTCGGCCACCAC CTTGCTGGAGGCGCGGC-CGCCGAGGTC GAT GGCCTCGAAGCGCGGCGCCTCGATCGGG TTGTTGGTGTCGATG  80 372
D3880_RS06460 1400624 .. 1400655 +    -5  -4.41548   CGGACTGAAAGCTTT      C-CCTGTGCCGGACG CGA CCTCCGGCCAAGGCG      TTTTATCCCCTCTCC  68 172
D3880_RS06485 1405952 .. 1405988 + -16.6  -3.37796   GGCCACCGCCGGCGC   GGTGGGCGGCA-CCGCG GTTT CGCCGATGCCGCCCATC    TTGTCGGTGCTCGGC  85 222
D3880_RS06515 1415474 .. 1415487 +  -3.8  -4.56597   TTGCCGCACAACCCG               CAGG GACGGG CCTG                TTTTTGCGCGGCGCG  68 313
D3880_RS06525 1417352 .. 1417393 + -10.1  -3.91897   CCACGGCTAGCAACG TGCAGGCGGGCCAGGCCG GGTAGAG CGGTCGGGCTCGCC-GTA TTTATAAGTACCGCG  78 53
D3880_RS06540 1421661 .. 1421694 + -21.1  -3.05562   CTGAGCGGCACGTGA     CGTTCGTCCCGGGCCG CAA CGGCCCGGGGC-AACG     TCTTACAGGCTTTCT 100 37
D3880_RS06545 NONE
D3880_RS06550 NONE
D3880_RS06555 NONE
D3880_RS06560 1426365 .. 1426397 + -17.7  -3.86015   AAAAGTGAGGAAATG      CCCTGCAAGGCGCGC AGT GCGGGCCTTGCAGGC      TTTATGGAAAAAGTA 100 33
D3880_RS06565 1426790 .. 1426818 + -21.9  -4.87786   AACCGTCCGGAACAA        CAAAAGGCCCGTC AGT GACGGGCCTTTTG        TTTTTCTACGGTTCG 100 39
        tcdA 1434796 .. 1434816 +    -4  -3.28791   AGCGCGCTGAAGAAA           CG-TTCGAG GTCG CTCGAGTCG            TTGTACAGGCCCAGT  47 485
        rpsB 1443453 .. 1443467 + -12.8  -4.64657   CCCGTTGCGCAAGAA               GGGGGC TAG GCCCCC               TTTTTGCCACTTTGG 100 60
         tsf 1444436 .. 1444463 +   -17  -4.07568   TACTGTCGTATCGAA        GAGGCTGCCCGC TTAC GCGTGCAGCCTC         TTTTGCAAAGCGCGG 100 51
        pyrH NONE
         frr NONE
        uppS NONE
D3880_RS06660 NONE
        ispC NONE
        rseP 1450064 .. 1450083 +   -10  -5.60993   TTACTGAATGACAAA            TCTGTCGC TTAT GCGGCAGA             TTTTTTTATCGCCAG 100 45
        bamA 1452527 .. 1452547 +  -3.9  -3.44848   CCAATTCTCCCTTGG            TCAGACGTT CTA ATCGTCCGA            TATTTGATAACGACA  49 13
D3880_RS06680 NONE
        lpxD 1454149 .. 1454171 +    -9  -3.86252   TGCTGCATCTGATGC           CTGACGCGCG CGC CGCGCGTCCC           TTATCTTTACTACAG  73 22
        fabZ 1454622 .. 1454636 +  -4.2  -3.48807   TCGGCTGAAATCACC               TGTGCG GAA CGCAAA               TTATGAGTTTGATCG  52 5
        lpxA 1455397 .. 1455412 +  -7.5  -2.57244   CATCCAAGCCTCCTC              GCGCG GCATCA CGCGC               TAACTTCATGGCTCG  49 7
        lpxB NONE
        rnhB 1457257 .. 1457289 +  -9.1  -4.87318   GTTAAGCTGTCGTTT     CGCTCGAGGCCCGG TACAAT CCGGGCCTTGT-CG      TTTTTGCGTTTTGCA 100 127
        dnaE 1460871 .. 1460906 +  -5.3  -2.85668   CTATCGGCTGCGAAT    TTCCGGCGGGGAGCC CGAAAC GGCTTACCGCCTAAA     TGTAGTCTCGACCTG  48 60
        accA 1461972 .. 1461994 + -19.2  -3.54489   GCGATGGCGTTGATG           CAACGGGCCC TCT GGGCCCGTTG           TTGCTTTAAGCTTGG 100 44
        tilS 1463368 .. 1463397 + -10.7  -4.38116   CTCCCGTCTCATATA       GCTCTGCGGATTC CTCG GAATCGGCGGGGC        TTTCATTTTTGTCAG  87 64
D3880_RS06725 NONE
        kdsA 1466061 .. 1466094 +  -5.1  -4.30034   TTGGTCAGAAATCTC     CGTGCCTCCCCGCGCC ACA GGC-CGGGCAGCAGCG     TTTTCGTCAACTTTT  68 87
         eno 1467431 .. 1467448 + -12.7  -4.99638   CCGGGAATGGTAAAA             GGGCAGC GCAA GCTGCCC              TTTTTCTATGGATAT 100 42
        ftsB NONE
        ispD 1468812 .. 1468831 +    -7  -3.06492   GTTCCAGCAGCGACA            CCAGCGCG CCGC TGCGCAGG             TGTTCGAGTACATAG  51 378
D3880_RS06755 1470844 .. 1470854 +  -8.2  -3.36273   CGCGCTTGGCATGCA                 CCGG CTA CCGG                 TTCGTCTTGAGGAAG  59 94
        fghA 1471745 .. 1471765 +  -6.8  -3.98282   AAGCAGGTAGAATCA            CGGCCTGA CTCTT TCAGGGCG            TTTGCTTGATATGCG  65 50
        ispF NONE
        truD NONE
        surE NONE
D3880_RS06780 1474725 .. 1474743 +  -3.8  -2.70932   GTGGTTTGAGGGTTC             GCGCAG TTTAGGC TTGCGC             TGATTCGAGCAGGAG  41 32
D3880_RS06785 1475743 .. 1475773 +  -6.7  -3.19026   ACGTGGGAGGACGGA       CTCTGGTGAGGCC ATGGA GGCTGCACCCGGG       TTCGCTGTTGAACTC  54 63
        rpoS 1476829 .. 1476842 +  -9.5  -5.61596   CGAGTGCATAAGAAA               CCGGC CGCG GCCGG                TTTTTTTATGCGCGT 100 43
D3880_RS06805 1480895 .. 1480912 +  -4.7  -3.16564   ACTTATACAGTTGTT             GGTGGCC ACCA GGCCCTC              TTGATCACGTGAGGA  48 74
        recA NONE
        recX 1482762 .. 1482778 +  -7.9  -4.08767   TTCGCCTGAGGCTTG              CTGGTGG AAA CCGCCGG              TTTTGCACAGGTCGG  69 332
D3880_RS06830 1485629 .. 1485664 +  -2.3  -4.15044   CCCCGCCGTAGATGA    TCGCCGGGCCGGCCG CGACTA TGGCGTGCCAGTCGA     TTTCTTCGAAGCCCA  58 280
D3880_RS06840 1487038 .. 1487060 + -14.8  -3.61889   ACAATTGGAATCCAT           TCCCGCCGGT TAA ACCGGCGGGC           TTTCACGCATTTTTG  90 13
D3880_RS06845 1487711 .. 1487736 +  -6.2  -3.14564   CTCTCAGGCAAGCGT        CG-GCAGC-ACG ATCG CGTCGCTGCGCG         TTACTCCGGCGGTCA  50 245
         fpr 1489544 .. 1489561 + -14.1  -5.12068   GCGTTGTATCCCCAA             GCCCGCC CATC GGCGGGC              TTTTTCTTGGCTATG 100 47
D3880_RS06865 1491024 .. 1491061 + -13.6  -3.28712   GCGTGCCGTCCAGCA  GGTCGATGCC-GGACAGCC ATA GGC-GTCCCGGC-TCGACC  TTGTCCAGGCGGACC  73 496
D3880_RS06880 NONE
D3880_RS06885 1493020 .. 1493032 +  -6.2  -3.55444   GGCGACTGAGCCGCC                CGGC GTGGA GCCG                TTTGGGGCGTCAAGG  55 32
D3880_RS06960 1505201 .. 1505221 +  -6.8  -3.05596   GCGGTGGATGTGGCC            CTGCTCGT CCTGC ACGTGCAG            TTCGGTCAGGGCCTG  51 194
D3880_RS06975 1508988 .. 1509026 + -18.9  -4.58395   TGATCAGGGCTGGAA   AACAAACGGCGCGACCC TGGAT GGGTCGCGCCGTTTGCA   TTTTTGGGGACTACC 100 38
        dinB 1516106 .. 1516120 +   -10  -3.92324   GTTCGCCCAACCATT               CCACCT GGT AGGTGG               TTTCCTGTTCCAGAG  77 481
        cysM NONE
        rlmD 1522941 .. 1522954 +  -5.9  -2.60392   CCATAAAGAAGGCTG               GCGTC ATTC GGCGC                GTTGGTTCGAGCGTC  46 64
        relA NONE
        mazG 1526085 .. 1526103 +  -4.5  -3.57462   TTTTGGCTGCTGAGA            GGG-CGCC CGCA GGCGGCTC             TTTCCAGCTGAAGTA  54 28
D3880_RS07050 1526746 .. 1526760 +  -8.5  -5.72616   GCATCGTTAAAAAAA               CCGGG GGCTG CCCGG               TTTTTTTATGTCCAT 100 48
D3880_RS07055 1528340 .. 1528353 +  -2.3  -4.17296   CATAGGGCGTAAAAG               CCGGA TAAG TCGGG                TTTCTGTGTGTAACG  60 49
D3880_RS07085 NONE
D3880_RS07090 NONE
D3880_RS07095 NONE
         hda 1537000 .. 1537013 +  -3.7  -3.16564   GGCTCGGGTCGAAGG               CGGCG AGCA CGCCC                TTGATGAAGTACAGG  45 259
D3880_RS07120 1539963 .. 1539982 + -16.4  -3.09516   CGCTAGAAACACGAA            CCCCGCGC TTGG GCGCGGGG             TTCGGTCATCCAGCG  83 382
D3880_RS07135 1542488 .. 1542500 +  -3.4  -2.93703   ACCGAGGAGCGAGAC                GATG GCGCG CATC                TGTATGCATGGTTAT  42 43
D3880_RS07140 1543038 .. 1543088 +  -7.5    -3.794   GGCGAAGCGGTCGAA G-CGGCTTTCGGCGTGGATCAGGGC GAT GACCAGGTCCGGG-CGAAGGCCGGC TTTGCTGGCTTCGCG  66 299
D3880_RS07165 1548948 .. 1548964 +  -2.1  -2.71712   TGATTTTCGTTTTAT              CGAGGGC TAG GCCGTGG              GTTTGGAAGAGCGCG  39 16
D3880_RS07170 1549163 .. 1549210 +   -23  -3.08015   TTCCTCCTCCGCATT ATTGACCCATAAAAAACCCGCC AGCT GGCGGGTTTTTTATGGGTCGGG TATTAGCGTCGTTGC 100 21
D3880_RS07190 NONE
        aspS NONE
D3880_RS07200 1554945 .. 1554972 + -17.8    -5.252   TCTCGTGCGGAGCAG        GCCGGAAGCCGCC TGA GGC-GCTTCCGGC        TTTTTTATGCGCCTG 100 46
        ruvC NONE
        ruvA NONE
        ruvB 1557453 .. 1557469 +  -8.7  -4.21631   CTATTACGAGGACAC              CGATGCT GGT GGCATCG              TTTATTACGTCAATT  79 179
        tolQ NONE
        tolR 1559014 .. 1559039 +  -3.9  -2.73875   GGGCTGATTACCGAG         GCGCCCT-GATG CAG CAGCGAGAGCGC         TCCTCTTCGGAAGGC  41 17
        tolA NONE
        tolB 1561289 .. 1561302 +  -2.4  -4.08767   CTGAACTGATGCGGC               GCAA TATTTT TTGC                TTTTACACACCTGGG  57 32
         pal NONE
        ybgF 1562671 .. 1562687 + -10.8  -5.27477   CGCTATTCAAGAAAA              CCCGCG CTTGT CGCGGG              TTTTTTCGTTAAAAT 100 49
        queE NONE
        queC NONE
D3880_RS07265 1564272 .. 1564302 +  -4.6  -2.76261   CGCCTCCATTACCCT       GCAAGGGGTGGGTG ATA TACTCGTCTCATGC       CTTTACAGGTTCAGC  43 76
        nadA 1565400 .. 1565417 + -10.5  -5.24531   CCAGCCCAACAAAAA             GCCCGGC CTAG GTCGGGC              TTTTTTGTGGGCGCT 100 45
D3880_RS07280 1567252 .. 1567268 +  -2.9  -3.05596   TGTGCGTCGGTCATA              CGCCGTT GAA AATGGCC              TTGGCTCGCGAGATC  41 60
D3880_RS07285 1568400 .. 1568415 + -11.8  -5.06414   CGAATAAAGCAAAAA              GGCCGC TGCT GCGGCC               TTTTTGTTGCCAGCC 100 34
        dapA 1570503 .. 1570521 +  -5.2  -3.51976   TGCGTCAGGCTCTGC             GCCAGTCC GGC GTATTGGC             TTAATTTGAGGAATT  52 3
        bamC 1571721 .. 1571747 + -17.4  -4.10552   AGATGTAGAAGCCAA         TAGGCGAAACCC GGT GGGTTTCGCCTG         TTTCGTTTACTCAAG 100 81
D3880_RS07310 1572666 .. 1572687 + -14.5  -2.71325   TGTCCTGGCTGATAC           CAGAGGAGC TACG GCTCCTCTG            TGCGTTTCTGGCTGC  77 45
D3880_RS07315 1572897 .. 1572934 + -20.7  -4.09739   TTTCCCCGCCATACA   TCAAAAGCCCCGGACGT TAAC GCGTCCGGGGCTTTTGC    TTTTCGGGCGGTTCG 100 30
D3880_RS07320 NONE
D3880_RS07325 1574229 .. 1574251 +  -9.9  -4.28548   GAAGAATTGGCACGA           CTGTGCACA ATTGC TGTGCGCAG           TTTTCCTGCGTCGCT  84 74
D3880_RS07330 1575283 .. 1575293 +  -8.2  -3.72576   ATGAGCCTGCAGCAG                 GCCG AGG CGGC                 TTTGCTGGAAGAGCG  67 181
        rmuC 1576906 .. 1576922 + -10.8  -3.55444   CCGATGCTCCCCATC              CGCGGC AACAG GCCGCG              TTTGCCCAGTCGCGA  70 278
D3880_RS07355 1580840 .. 1580852 +  -6.2  -3.54741   GTGCGCGCAGGGCGG                CCGG CTTGA CCGG                TTTGGCCAGGTAGTC  56 291
D3880_RS07365 NONE
D3880_RS07370 1586032 .. 1586044 +  -4.7  -3.14132   CCGGCGAATACTGCA                AGGCC TGC GGCCG                TTCGTAGGCGCGCGA  48 6
D3880_RS07375 NONE
D3880_RS07380 1587270 .. 1587299 +  -5.9  -4.08958   CAGCTGCCTATTTGA       GCCGTGT-GAATAA TTG TTATTTGACATGGC       TTCTTATTTACGCCT  65 26
D3880_RS07385 1589491 .. 1589510 + -16.4  -4.70659   GTTCGGTCGAACCAG            CGGGCGCC CACG GGCGCCCG             TTTTTGCATCTCCAC 100 46
D3880_RS07390 1591506 .. 1591523 + -14.1  -5.10461   GTACAGAGACAAAAA             GCCCGCC GATT GGCGGGC              TTTTTGTTGGCTCGG 100 41
D3880_RS07405 1593209 .. 1593219 +  -2.4  -2.76189   ATCCTTCTTAGTGTT                 ACGC GCA GCGG                 TAGTTCAGTCGGTTA  39 41
D3880_RS07410 1593352 .. 1593367 +  -5.4  -4.59069   AAAGCCTACCAAATA              CCTGAA CTTA TTCGGG               TTTTCTCGTTCTCAT  76 88
D3880_RS07415 1594185 .. 1594216 + -24.6  -3.54129   GCCGCAGTGATTGCA      CGACAACGCCCCGT TTCG ACGGGGCGTTGTCG       TTTCAGGGGGATATA 100 41
D3880_RS07420 1595003 .. 1595014 +  -2.2  -4.06384   GCTGCTGCCATCACG                TCTG ATAG CGGA                 TTTGTCCTGTTAAGA  57 51
D3880_RS07425 NONE
D3880_RS07430 NONE
D3880_RS07435 1596215 .. 1596233 +    -3  -4.17698   GCCGAGGAGTTGGGG             CTCTAGCC TAG GCCGAGAG             TTTCTGTGTATCGAT  60 20
D3880_RS07450 1601394 .. 1601404 +  -6.8  -3.80573   GGAGTAGAAACTGGC                 GCCT TCC AGGC                 TTTCCTCATGCTCAG  64 171
D3880_RS07485 NONE
D3880_RS07490 1608599 .. 1608612 +  -3.7  -3.19246   CCAGTCGACTCTTGC               CGACC TTGT GGCCG                TTGACTTCCAGTTCG  45 232
D3880_RS07510 1612170 .. 1612188 + -13.2   -5.4505   GACGGAATAAGAAAA             GGGATGAC AGT GTCATCCC             TTTTTTATTGGGCGC 100 44
        recQ 1618348 .. 1618364 +  -2.9  -3.64599   GCTGCAGGCGGAATT              CGAGGTC TGA GAACTTG              TTTGGGATCTGCTGC  49 16
D3880_RS07540 NONE
D3880_RS07545 1620726 .. 1620738 +  -5.5  -3.52652   GGTGAGAGCCTTGCC                CTGCA CTT TGCGG                TTGTGGTTAGCTCGC  55 36
D3880_RS07550 1621314 .. 1621346 +    -7  -2.78816   ACTTTATTGACTGTC     TGCGCGCTGGAGCGTG TAT CATGC-CCT-CGCGCA     TATGATGCCAAATCG  50 113
D3880_RS07555 1623646 .. 1623669 + -11.6  -4.39166   TGCCCCGCCAGCAAA          CGCCGCGCCG GAGA CTGTGCGGCG           TTTTGCTGTCTGGGG  93 47
D3880_RS07560 1624440 .. 1624456 +  -4.3  -2.87564   AGGGATGCGGGCCTG              GCTTCGG TAG CCTGAGC              TGTATCCCAACCTCC  45 69
        rfaD 1625538 .. 1625595 + -19.3  -3.29511   ACGCCGCTCGTAGGA TGGGTTGAGC-CTGCAATACCCATCACC CGC GCCGATGGGTATCGCTGCGCTCAACCCA TTCTACGGGGCTGAA  95 76
D3880_RS07585 1628618 .. 1628647 + -13.6  -3.02511   CAGGCGGAACTGGCG       GCGCTGGCTTGA GGCCTG TCAGGCCGGCGC        TGTTGGCCGGGTGCA  76 14
D3880_RS07600 1631894 .. 1631904 +  -3.2  -3.82592   CGGCTTGAGGGCGGC                 CTGA ACC TCGG                 TTGTTATGAAGTTAT  54 316
        hppD NONE
D3880_RS07610 NONE
D3880_RS07615 1635480 .. 1635506 + -17.4  -3.57462   ATGGGTTGCCGTTGT         CGTAGCTCGGAT GCA ATCCGGGCTACG         TTTGGCGCTGAGGTC 100 57
        maiA NONE
D3880_RS07625 1637872 .. 1637920 +    -4  -4.61633   GAGACAAGGCAAAAA CAGCCGAAGAA-GCGCAGTTTACG AGT TGTAAA-TGAGCATTCTGAGGCTG TTTTTAACGCTGTAT  70 103
D3880_RS07645 NONE
D3880_RS07650 1642791 .. 1642819 +  -9.4  -2.71731   GGCCAGCGCTCGACC        CGCGGCGGCAGG CGCCA CTCGCCCCCGCG        TCGTTCGGCCATCAC  55 232
D3880_RS07660 1644283 .. 1644296 +  -3.7  -3.40403   TGGCTGTGAGCCGCT               CGCGG GGCG CCGGG                TTATGCTGGGCACCC  47 32
        arfB 1644939 .. 1644962 +  -8.8  -3.28712   CTACCGAGAGATCAT          CTAACTCGCG AGAT CGCGAGTCGG           TTCTGAGACGCGGGC  63 219
D3880_RS07670 NONE
D3880_RS07675 1646557 .. 1646580 +  -2.2  -4.07568   CCTACGTACCAGCTC          CGTAGGGTGG AAAA CCGCGCAGCG           TTTTCCACCAGCGGA  57 123
        selD 1651073 .. 1651092 +  -3.4  -2.80816   GTTGCTCGAGCGCCA            GCGCCATG CGGT CGAGGTGC             TGTGATGCGTGACGA  41 1
        mnmH 1652252 .. 1652262 +  -2.4  -4.09685   CCGCGCCGGTGGAAA                 ACGC TTC GCGG                 TTTTCCACCCTACCG  57 80
D3880_RS07725 1656072 .. 1656102 +  -7.7  -4.25104   GCATCATGCACCACT      GC-CGAAACA-GCCG CTG CGGTGTGTTTCGTGC      TTTTCATCGCAGGCA  75 114
D3880_RS07730 NONE
D3880_RS07735 1658587 .. 1658599 +  -3.3  -3.10611   GGTCACGGGTTGAAT                TGGCG TTG CGCAA                CTTTCTTAAGGTAGA  43 107
D3880_RS07740 1659479 .. 1659493 +  -2.7  -2.91695   AGGCCATGCTCTGAG               CGGCG GCTTA CGCCC               TAATTTAGGCGTGCG  40 27
D3880_RS07745 1660382 .. 1660400 + -17.4  -5.29782   TCCCGGAATGTTGCA             GGCGGCCC AGC GGGCCGCC             TTTTTTGTGGCTATG 100 136
D3880_RS07765 1664783 .. 1664798 +  -4.6  -2.67244   ACGGTTGGGAAAAGT              CGGGCT TATA AGCCCA               TAAGTTTGCCTGTGG  43 54
         acs 1666875 .. 1666913 + -27.5  -3.90744   CCCAGCACCCGTACC   CAGCGCCCCGCCTCGGC CACAA GCCGGGGCGGGGCGTTG   TTCTTTCCGGCCGAA 100 41
D3880_RS07775 1668641 .. 1668662 +  -8.7  -4.08692   CAGTCCTCTCTCGGA           TGGAGAGGG GTGC CCCTTTCCG            TTTTCCCGAGGATTG  76 202
D3880_RS07780 NONE
D3880_RS07785 NONE
D3880_RS07790 NONE
D3880_RS07795 1671990 .. 1672009 +  -5.6  -2.53263   GGGGATAGCACTGGC            GCCG-CAGG GCG CCAGACGGC            TAGATTGGCGCTCCC  45 43
D3880_RS07800 1672595 .. 1672610 +  -4.7  -3.24747   GGCGCAGCATCTGCC              GTTGC GGGCCG GCAAC               TTCGTCATCTCGGCA  48 74
D3880_RS07805 NONE
D3880_RS07810 1675103 .. 1675136 +  -5.9  -3.59979   CAACACCAATACACG     GCTTTCG-GCTTCCGC CCG GCGGGAGTACGGTGGC     TTTGCCATGAGAGAG  57 135
D3880_RS07815 1676556 .. 1676577 + -10.1  -3.07816   CAGCTTCACCCCGAA           TCGCCGCCGC ACC GCGGCG-CGG           TTCCCTGACTGCCGA  64 132
D3880_RS07820 1677356 .. 1677375 + -12.8  -3.60818   TTCTGATCCTTTTTC            TGCCGCGC TCCG GCGCGGCG             TTTGAGCCGTTTTGC  82 35
D3880_RS07825 NONE
D3880_RS07830 1681197 .. 1681231 + -13.5  -3.02043   GTTGACGTGGAAGTG    CCCGCCGAGGGCCTCG ACGG CGAGGCCGA-GGCGGG     TGTTGCCCAAGCATT  70 98
D3880_RS07840 1683508 .. 1683529 +    -3  -4.07526   CCGAATTCTGTGTGC           GCCATG TTCCTCAAGT CATGGC            TTTCTCTGAGTGATT  57 73
        aruF 1684632 .. 1684677 +  -2.5  -3.31144   TCTCCCGCCGGGAGA GGGTGGCCCGTCAGGGCC GGATGAGGGAA GGCCCTCACCG-CCAGCC TTCTCCCCGTGGAGG  44 48
        astA NONE
        astD NONE
        astB NONE
D3880_RS07865 NONE
        astE 1689940 .. 1689954 +  -2.1  -3.92745   CCCCGCCGGTGCAGG              GCGATC AATA GA-CGC               TTTCTAGCCCTTTTT  54 105
        alaS 1692765 .. 1692775 +  -4.6  -3.62864   GGGCGCCCTTCACGG                 GCTG AGG CGGC                 TTTGAAATGGCTTTG  54 106
D3880_RS07880 1694029 .. 1694057 + -16.1  -3.09004   GTAAGGCTGGTAATC        CGAAAGGCGCG CTCACTC CGCGCCTTTCG        TCATTTTGGCCGTAG  83 37
        csrA NONE
D3880_RS07890 1694581 .. 1694607 +  -2.3  -3.76952   CTGGTGTTTTTAGAG         TCCGATAAGTT ATTGA AAGTAATCGGA         TTTAACTTGAATGCC  52 58
D3880_RS07895 1694736 .. 1694767 +  -4.6  -3.54741   TGAGTGCGCCATATA      CAAGTTGATTTTTA GTGA TAAAAATCGATGTG       TTTCAACCAGTGGTG  52 30
D3880_RS07900 1694891 .. 1694912 + -15.9  -5.79595   TGCGCCATACCGAAA           GGGCCTGCA GAAA TGCAGGCCC            TTTTTTGTTTTCGGC 100 34
        mgtE 1697223 .. 1697238 + -11.8  -4.85599   CTGAACAACAAAAAA              GCCGCC TGCG GGCGGC               TTTTTATGCAATCAA 100 37
D3880_RS07930 1699632 .. 1699643 +  -4.4  -2.70932   TGTCTAAGCGGAAGG                GCTA ACGG TAGC                 TGCTTGGACGGCACG  43 452
D3880_RS07940 NONE
D3880_RS07945 1702583 .. 1702598 +  -6.8  -3.65522   CCCTAGACAATCTGC              GCGAGG TCAG CCTTGC               TTGTTGGAGTCGGTG  60 50
D3880_RS07950 NONE
D3880_RS07955 1704333 .. 1704343 +  -5.4   -4.4078   ACATCGCTCGTCCCG                 GTTG GAT CAAC                 TTTTGGTTGGGGAGC  71 361
D3880_RS07965 NONE
D3880_RS07970 NONE
D3880_RS07975 1709136 .. 1709151 +  -5.4  -3.30124   GCAGCTCGCTCAGGC              CGGCTGA GGG TC-GCCG              TTATCGGCGATCAGG  52 19
D3880_RS07990 1711604 .. 1711632 + -20.4  -3.73072   CAGCAAACAGCCAAA        CGCCGAACAGCC TGCGC GGCTGTTCGGCG        TTTGCTGGCACGGTT 100 53
D3880_RS08005 1715269 .. 1715304 +  -2.4  -3.30039   CCGAAGCAGGCCTGA    GTGCAGGTTCCGCCGTG AGT CACGCCGCTATC-GCGC    TGTTCCTTCTGGATG  44 26
D3880_RS08010 1715646 .. 1715657 +  -2.2  -2.74461   GTGTGCGCGGAGTAG                GTGA GGTA TCGC                 GTTTGACGATACATC  39 26
D3880_RS08015 1716959 .. 1716985 +  -8.6  -3.58305   TCTGAGCCATGCGGC         CGCGCTGTGCGG CTG CCGCATAACCCG         TTTAACCCATTCCTT  64 36
D3880_RS08020 NONE
D3880_RS08025 1720170 .. 1720198 + -13.8   -3.3579   GACGGCGGCAAGCGT        GGAGGGCCGACG CAGTC TGGCGGCCCTCC        TGTTTCAAGCGATTT  81 41
D3880_RS08030 1721306 .. 1721318 +  -3.3  -2.74263   GCTGCGCGTGCCGCA                GCCAG CCA CTGCC                GTTTCGGAGTGAGGT  41 1
D3880_RS08035 1723911 .. 1723933 +  -6.9  -3.39668   AGGAATTCCATACCG          GC-CTCGCCG ATTT CGGCGCGAGC           TTCTGCGGTTTGCCG  56 124
D3880_RS08040 NONE
D3880_RS08045 NONE
D3880_RS08050 NONE
D3880_RS08055 NONE
D3880_RS08060 NONE
D3880_RS08065 NONE
D3880_RS08070 NONE
D3880_RS08075 NONE
D3880_RS08080 NONE
D3880_RS08085 NONE
D3880_RS08090 NONE
D3880_RS08095 1734467 .. 1734510 +   -21  -3.37796   CGTGGGCGTTTTATG CCCAGGCACCGCAGGCGCTG TGCG CAGCGCTTGCGGTGTCGGCG TTGTCACTGATCACA 100 86
D3880_RS08100 1736236 .. 1736267 + -10.8  -4.38712   TGCCTTGATCCACCA      CCTTCGACCGAGCG CCCG TGCTCGGTCGCAGC       TTTTCTGGAGCTAGC  87 33
D3880_RS08105 NONE
D3880_RS08110 1737694 .. 1737739 +    -6  -3.53012   AGACCACGGAACAGA CCACAGACGCCG-GTGGCCACC CCCA GGTGGCTGCTCGGCGCC-GCGC TTTGCACCGCCACCA  56 282
D3880_RS08130 1742338 .. 1742352 +  -5.6  -3.12446   TTACAGGCGAGACTC               CTCGCC TGA GTCGAG               TTCGGTGGGTTTGTG  49 228
        thiO 1743709 .. 1743722 +  -4.5  -3.36273   CCATTCGCAATCTGG               TCTGG TGCA CCAGG                TTGATGTTCGGACCC  49 257
        moaA 1745473 .. 1745487 +  -5.6  -4.08706   GTCGCATTGGAGTGC               CCCGAC CAG GTCGGA               TTTCTATGATCGGGC  65 217
        mhpB NONE
D3880_RS08150 NONE
        mhpD NONE
D3880_RS08160 NONE
        dmpG 1750391 .. 1750431 + -13.9  -2.70932   TGAGATGTGCAGAGG  CATTGCGCTGGGCGAGCTC CTT GCGGTTGCCCGGCGCCATG  TCGTTGAAAGGAGCA  73 38
D3880_RS08170 1751115 .. 1751126 +  -2.2  -2.90349   AAGCCTGGACGTCGA                GTCG TGGC TGAC                 ATTTACCTTTGCAAC  40 80
D3880_RS08175 NONE
D3880_RS08180 NONE
D3880_RS08185 NONE
D3880_RS08190 NONE
D3880_RS08195 1759756 .. 1759807 +  -2.6  -2.79796   GCGCCGTGCCCGCGA GCGACGTGCCCTCCACCGATGAGG CTGA TCTCTCCGGGGGCGAGCGCGTCCA TGTGGTCGCGTAGGG  39 57
D3880_RS08200 1761059 .. 1761069 +  -2.4  -3.54459   GCTGGCGTGGTGCAG                 GCCG TAT CAGC                 TTTCGGAAGCGTTCA  47 83
D3880_RS08205 1761860 .. 1761870 +  -5.4   -4.2558   AGACCCTGTGGCTAT                 TCAG TTG CTGA                 TTTTCATCACAAGTC  68 248
D3880_RS08210 NONE
D3880_RS08215 1764580 .. 1764607 + -14.2  -2.53876   ACTGATTTTTGATCC        T-TCCGGCGCGGC TCC GTCGCGCCGGACA        TCCCTTGGCATGGAG  72 36
D3880_RS08220 NONE
D3880_RS08225 1766954 .. 1766966 +  -7.7   -3.6579   GTCCCGGGAGCGTCA                GCACA ACC TGTGC                TTCTTAGGATGAGTT  64 90
D3880_RS08230 1767535 .. 1767581 +  -2.3  -3.14931   GGTTTCGGCTGGTCG GAGATAGAGCTCACGCCTG-CAC GTA GTGATGGGTGTGCGTACT-TCTC TTCGTAAAAAATACA  43 152
D3880_RS08235 1768952 .. 1768981 + -20.9  -3.75153   AATCGCAACCGGACT       GGACGTTTCGCTC CCAG GAGCGAAACGTCC        TTTGCATTGCGAGGA 100 50
D3880_RS08240 1769975 .. 1769986 +  -7.2  -3.53444   TGCGTAATGGGATTG                CCCG CGAG CGGG                 TTTGACGCCGACTCC  58 9
D3880_RS08245 1770760 .. 1770783 +  -5.8  -3.90112   GTCGACGCTCATGGT          CGTGGCGTCG ACAT CGGCCCCTCG           TTTCCTTACACCGAC  62 75
D3880_RS08280 NONE
D3880_RS08285 1779115 .. 1779146 +  -7.2  -3.60098   CTTGACCCGGCCGCG      CCACGAACTGGGGCT CTG AGTCCC-GATCGAGG      TTTCCGATAACCCCT  60 7
D3880_RS08290 1780410 .. 1780426 +  -3.6  -3.06696   GGTGCAGTACGCCCT              GGCGGA ATGAA TGCGCC              TGTATTCAACCAAGG  43 67
D3880_RS08295 1781019 .. 1781029 +  -3.2  -3.61268   ACCTCCTCTGTAGTT                 TCTG GCG CAGG                 TTTCAACCTTCGATC  51 208
D3880_RS08300 1782624 .. 1782648 + -17.3  -2.71364   TGATCACCCTGTGTT          CTCCTGCTCAA AAG TTGAGCAGGAG          TAGTTGAACACCTGG  84 523
D3880_RS08355 NONE
D3880_RS08360 1795163 .. 1795182 +  -2.8  -2.53911   CAGGGCGGCGACGCC            TTGGCC CAGAACGC GGCCGA             TGGCTTGCAGGTTCG  39 429
D3880_RS08370 1798067 .. 1798098 +  -2.8  -2.62983   TGTCGGGGCCGTTCG      GCCCCGGCGACG AAGGAGGG CGATGGTGGGGC       TGGTCTCCACCTCGC  38 43
D3880_RS08400 1809809 .. 1809821 +  -2.6  -3.54129   TTTCGCGGGTGGTCA                GCTG CAAAT CGGC                TTTGCCGGCCGTCTC  48 369
D3880_RS08410 1813811 .. 1813835 +  -4.3  -2.61383   CATCGAATCATGAGC         GC-GCGGGTCG ACAGG CGACC-GCAGC         CTTGTAGCTAACAGT  43 114
D3880_RS08415 NONE
D3880_RS08420 NONE
D3880_RS08425 NONE
D3880_RS08430 NONE
D3880_RS08435 1818083 .. 1818104 +  -5.7  -2.84098   GAAGGCCTTTCAACC           CGCAGACCG TCAC CGGCCTGCC            TGATTGCTTCAAGAG  48 92
D3880_RS08440 NONE
D3880_RS08445 1820386 .. 1820443 + -21.3  -2.77781   GCAATATCGCGTGAC TGCCGGGGAGCGGATCGCCATGGGCCT TCCA GGGACCATGGCAATCCGCTTTCCTGCG TCGATTTTCCTGGGG 100 27
D3880_RS08455 1824641 .. 1824670 + -22.1  -2.52543   AAGCGCTCCTGAAGG       CCCGCGCCCCGGG ACAA CCCGGAGCGCGGG        TGCCTTAGAGCGGGT 100 29
D3880_RS08475 1830960 .. 1830986 +  -5.7  -2.62983   TGATCCCCGGACCTC         CAAGCGCCGTG TTCGT CGCGACGCTCG         TGCTCTCGGCATGGA  46 38
D3880_RS08480 1833550 .. 1833582 + -14.9  -3.52918   GCTCGCTTCGCTCAC      CGGCCAGGTAAAAGC TAC GCTTTCACCTGGCCC      TTAATTTGACCATTA  90 141
D3880_RS08485 1835114 .. 1835171 + -11.6  -2.85545   CCGCCAGTAATCCTA TCTGTGCCGGGG-C-TGGACACTGCCTT CACCAC AAGGC-GTGTTCATGACCCCGGC-CAGG TCGTGTTCTTCCGAA  66 31
D3880_RS08515 NONE
D3880_RS08520 1843853 .. 1843872 +  -4.2  -3.69395   GTCGGGCGGATTTTG            CAGCTG-GC AAG GCTCAGCAG            TTATTCAATCCTGGC  54 407
        pcaQ 1844987 .. 1845030 +  -5.2  -4.41494   GTGGCGGAGGAGTAC GCCAACGGCGATACATAACC CTAT GGTTATGTAAGGCGGGTGCC TTTTCATTGGCCGTG  68 8
        pcaH NONE
        pcaG 1846487 .. 1846500 +  -3.8  -2.58544   GTCTCGGTAGCCCGA               CTGC CATGCT GCAG                ATTCTCAGCATCACC  40 41
D3880_RS08540 1847792 .. 1847820 +   -11  -3.30124   TGACCAGTGACTTGT        CAGGCGTTGCAC CATGA GTGCAATGCCCG        TTGTGCGGGATGCCG  72 369
D3880_RS08545 1848898 .. 1848914 +  -2.1  -4.14541   CCGCCTACCCGAAGC              CGGCTGC TGG GTGACCG              TTTATCTCGTTCATC  60 133
D3880_RS08550 1850063 .. 1850073 +  -8.2  -2.71731   GATCCGGTCCGGCAG                 CGCC GTC GGCG                 TCCTTCGCGAATGAA  53 99
        benA NONE
        benB 1852078 .. 1852108 +  -2.4  -2.60211   CACATCTGAAAAACA       CGGCATGACCCAGC GCA GTAGCTTCATGTCG       CGTTTTTACCGAGGT  38 32
D3880_RS08565 1853276 .. 1853298 +  -7.7  -5.41143   AAGCGTGAGTCCCTC          TGGGCCGTGT ATTG GC-CGGCCCA           TTTTTTTCGAGGCTG 100 159
D3880_RS08570 NONE
D3880_RS08575 1855674 .. 1855703 + -13.5  -3.14564   GCCACCCTCTCCCCC       GGCCCCTCTCCCG CAAG CGGGAGAGGGGAG        TTACTGAACAACTGG  78 129
D3880_RS08580 NONE
        catC NONE
        catA 1858349 .. 1858371 +  -6.3  -3.02144   GAGCGAACCGGACCG          CGCGTCACGG CTGG CC-TGATGCG           TCTTGCGCGAGGTGA  49 235
D3880_RS08595 1859787 .. 1859802 +    -4  -3.26568   TGCGGCGACGCCAGA              TTCCGCC GTC GG-GGAA              GTTTTGTCCCTATAA  45 204
D3880_RS08600 1861232 .. 1861250 +    -8  -2.69799   GCCGGGGTGCTGCTG             GGCCTGCT GCT GGCCGGCC             TGCTCTATCACCTCC  53 152
D3880_RS23050 1862000 .. 1862012 +  -9.1  -3.66803   GAATGACTCCGCGCG                CAGGC AGA GCCTG                TTTACGATCTTGCGA  68 35
D3880_RS08620 1863729 .. 1863741 +  -9.1  -3.16564   CTCGGCCATTTTGAC                CAGCC GGA GGCTG                TTACTAACGTAGCGC  61 127
D3880_RS08630 NONE
D3880_RS08635 NONE
        pcaF 1868798 .. 1868846 +  -4.6  -2.52464   CGACGCCTACGACGC TCCCTCG-TAGGGTGGAAAACCGC GAA GCG-TTTTCCACCGGATCGTAGGA TGGGTTGAGCGCAGC  42 42
D3880_RS08645 NONE
        pcaD 1871178 .. 1871211 +  -5.9  -2.52464   GTTGGCGCTGAGCCT     GCGAAGCCCAACATT TCCG GACGTTGGGCATCAC      TGCGTTCAGCGCCAA  45 52
        pcaC 1871715 .. 1871743 + -19.6  -5.09259   CCGCGTAAAAAGAAA        CGCCGTCCGGAG CATGC CTCCGGGCGGCG        TTTTGTTTTGGGATG 100 48
D3880_RS08670 1876721 .. 1876753 + -13.3  -3.58209   CTGTCACCAGGCGCT      GCCGTTTCCGAGCGG TAA TCGCACGGAGTCGGC      TCTTTCTCGCTTGAT  88 190
D3880_RS08675 1877979 .. 1878021 + -17.9  -2.53213   CGAAATTTGGTGTTT CCGTAGGGTGGGTTA-GCCGC GTA GCGGCGTAACCCACCAT-CGG TGCCTTCCGGAATTG  85 83
D3880_RS08680 1878985 .. 1879003 +  -3.1  -3.71597   GTTGTAAAAATCAGC             CCCTC ATTCATGGC GAGGG             CTTTTTCTTGGTTCT  54 34
D3880_RS08685 1880294 .. 1880309 +    -9   -4.0896   CGCGTTAGCCGCAAG              CGGCTT GCCG AAGCCG               TTTTCAACGCAGTTT  76 107
D3880_RS08690 1880981 .. 1881010 + -12.9  -3.53012   CGAGCCTTCCTTCTC       CCCACCTTCCCGCC TCG GG-GGGAAGGTGGC       TTTGCGGAAGGGGCA  79 99
D3880_RS08700 NONE
D3880_RS08705 NONE
D3880_RS08710 1885843 .. 1885876 +  -3.8  -2.72344   CCGGCGCCTTGAGCG    CGGGC-GAACGCCGCC CCGG GGTGG-GTGCAGTCCG     TGCTTGAAGCTAACC  41 29
D3880_RS08715 1886615 .. 1886637 +  -6.2  -3.61517   CGGCTCCGGGGTGTG           TTGCTCGGCG CTC CTGCGAGCAA           TTCTTCGGCAGGCAT  57 218
D3880_RS08720 1887549 .. 1887561 +  -4.8  -3.30124   TCTGCAAGATATGCA                CAGC AGGCA GCTG                TTGTAGCCCATAGAC  49 7
D3880_RS08725 1888752 .. 1888784 + -11.1  -3.15574   TCTTCGCCCGATTTA      CTCGCTGGCTCGCCC TGC GGGCCAGCCTGCGGC      TGTTACTCCGCTTCG  69 305
D3880_RS08750 1895465 .. 1895486 +  -2.3  -3.30159   TGTCGTTGATCAGGA           GAATG-CGGA GCA TCTGGCGTTC           TTCTCCAACCGTTAC  44 327
D3880_RS08765 1898498 .. 1898518 +  -7.5  -3.64703   CGATCAGTGCCAGCT            TGCGGGC CGCCAGC GCCCGCG            TTTCCGTGCAGGCGC  63 244
D3880_RS08775 1899160 .. 1899173 +  -3.7  -3.84406   GCTTGCTGGCCGTGC               CGTGG CTCG CCCCG                TTGTTCTACTGAAAG  54 0
        merP 1899479 .. 1899493 +  -5.7  -3.33492   GCAGAAGTGATGCCG               CGATG ATCGC CATCG               TTCTGGAGTCCGTGC  52 31
D3880_RS08785 1899858 .. 1899876 +  -2.3  -2.99259   GTACATGGCCGGGAT             CATGGTG AACAG CACCGCG             TAGTTGTTGTGGGTG  41 190
D3880_RS08795 1903878 .. 1903892 +  -9.2  -3.33696   GGAGAGGGGAGGGAC               GGCGGC CCC GTCGCC               TTCCTTCGCCCCGCC  63 166
D3880_RS08800 1904618 .. 1904671 +  -9.3  -3.45054   TGCGTTATATCCAGC CCTGAAGGGGCGCCAGGC-CCGCGCG CGA CGCGCGGAGCCAGCCGGCAGATTAGG TTGTGCATTCTAGAG  66 21
D3880_RS08805 1905715 .. 1905736 +  -9.4  -2.90392   CCGCCGCTGGGGTAG           TGGCCGGC CATCAC GCTGGCCA            TGTCGTTGCCCACTG  56 108
D3880_RS08830 1911720 .. 1911732 +  -5.5  -3.92178   GCCTGAGCTTCGGTC                TGCTC AGC GAGCG                TTTCATTGGCCTGCT  62 447
D3880_RS08850 1915123 .. 1915150 + -12.6   -3.2614   AGCCAGCGGAGCGAA        GGTGGGGCGGCC AGTT GGTCACCCCGCC         TTGATATACAACCTC  74 39
D3880_RS08875 1921295 .. 1921307 +  -5.5  -3.39844   AGTTCTGATGACTGG                GGTTC TGA GAGCC                TGTTTACGATCTCGC  52 228
D3880_RS08880 1922682 .. 1922704 +  -4.9  -4.10178   GTCGGCCGAGGCAAA          GA-CCTGAGC GTCT GTTCAGGCTC           TTTCTGCTCTTGTTG  61 19
D3880_RS08905 1926439 .. 1926456 +  -3.4  -3.05343   ATCAAGACAGTGGAT             G-CAGGC TGATC GCCTGGC             TCTTGGCAATCTAAA  43 17
        cheR 1927342 .. 1927360 +   -16  -4.87807   CTTGCTGACAGGAAG             GGGAGGCC ATG GGCCTCCC             TTTTTCATGTCTTGC 100 48
D3880_RS08920 NONE
D3880_RS08925 1931402 .. 1931412 +  -4.6  -2.90496   GCAACGCATGCAGGT                 GGCC GCG GGTC                 TGGTTTGAGGAACAG  45 7
D3880_RS08930 1932153 .. 1932174 +  -4.3  -3.61398   CAGCGCTTTCGACGG           GCGACCGGC AGCT GTTGATCGC            TTGTTCAGCAGCGGA  54 8
D3880_RS08935 1932984 .. 1932995 +  -7.2  -2.74012   CTGTTCACCGCCAGT                GCCG GCGA CGGC                 TGATTGCCATGCTGC  50 11
D3880_RS08940 1933764 .. 1933786 +  -2.7  -3.53444   TCGGCCGCCCGGAGT          CCGC-ACG ATGAGCGG CGTAGCGG           TTTCGAGCGGGCTGC  47 15
D3880_RS08945 NONE
D3880_RS08950 1937685 .. 1937722 + -23.7  -3.68351   CCTGATCTGTCTGAC   TGAAAAGGCGCGGCAGA GCGA TCTGCCGCGCTTTTTCA    TTTCCGTAATGGGCA 100 36
D3880_RS08955 NONE
D3880_RS08960 1939906 .. 1939921 +  -4.6  -3.14344   TTTCCCGCGAGCTGC              TGCGGC CGTT GCTGCG               TTGATCGGGGGGATG  48 6
D3880_RS08965 NONE
D3880_RS08970 NONE
D3880_RS08975 NONE
D3880_RS08980 NONE
D3880_RS08985 NONE
        flgB NONE
        flgC NONE
        flgD NONE
        flgE 1950491 .. 1950506 + -11.8  -5.42198   CCGGTTTCTCAGCAA              GGCCCC GTAA GGGGCC               TTTTGTTTTTTAAAA 100 243
        flgF NONE
        flgG 1952233 .. 1952262 + -14.4  -3.09516   GTTAGCCGCGTAGCG       GCGTAATCCGCC TGTGAC GGTGGATTACGC        TTCGCTAATCCACCC  80 59
        flgH NONE
D3880_RS09025 1954276 .. 1954287 +  -5.8  -3.78124   CCGGGCCTGCTTTTG                CGCA GTGC TGCG                 TTATTCGTCGTTCGT  60 187
        flgJ 1955566 .. 1955579 +  -3.1  -2.79183   AATAGCTGATGAGAG               TC-GCC CAT GGCTGA               TCTACTGAACATCGG  41 32
        flgK NONE
        flgL 1958946 .. 1958959 +  -9.5  -3.21912   GTAGGGGCGGCAAGA               GCCCC ATGC GGGGC                TTGGTGGGTTACGCC  61 56
D3880_RS09050 1960772 .. 1960800 + -22.5  -3.07962   TCTGCGTAACCACTG        CGGGGGGAAGTGC TTG GCGCTTCCCCCCG        TCTTGCCATGTGAGG 100 52
D3880_RS09055 1961187 .. 1961210 +  -2.2  -3.45911   GCCTATTGTTTCAGG          CGCAAGCCTG AAAG CTGGCATGGG           ATTTGTTTGTTTAGA  47 15
        fliD NONE
        fliS NONE
        fliS NONE
D3880_RS09075 1963857 .. 1963873 +  -3.6  -2.52896   GTTTGGTTGAGGCCC              CTGCCG CACTT CGGCAA              TGCCTTCACCGATCC  40 31
D3880_RS09080 1965567 .. 1965613 +  -7.9  -3.29511   GGAAGTCGAGCAGGA TTGATCCTCTACCTGGCTCCCG TTCG CGGGAGCCAGGCGGCTGA-CGG TTGTCGGCCAGTCCC  59 22
D3880_RS09085 NONE
        fleR 1968481 .. 1968509 + -15.4  -4.28361   CCCATCCTACGAAAA        GCAAAGCCCGGT CCTGT ATCGGGCTTTGC        TTTTCCTGCCGTTGC 100 113
        fliE NONE
        fliF NONE
        fliG 1971757 .. 1971773 +  -6.5  -2.55074   GAGATGTTGTAGGTG              CGATGGG GCA CCGATCG              TAGGTTGGCGTTGAG  49 29
        fliH NONE
        fliI NONE
        fliJ 1974799 .. 1974811 +  -4.7  -4.66609   CCCAGGGCTGCATCA                CCGGC AAC GGCGG                TTTTTGCATAGCCTG  73 88
D3880_RS09125 NONE
D3880_RS09130 NONE
D3880_RS09135 NONE
D3880_RS09140 1978994 .. 1979022 +  -8.7  -4.40358   GCGAGCTTTCTGCAC        CCTGGGCGTGGGG CTT CGCCGCGCTCAGC        TTTTGTAGAGTGGGT  82 87
        fliL NONE
        fliM NONE
        fliN NONE
        fliO NONE
        fliP NONE
        fliQ NONE
        fliR NONE
        flhB NONE
        flhA NONE
        flhF NONE
        fleN NONE
        fliA 1990119 .. 1990139 + -10.3  -3.57144   TGCACGATTGATCGG            CGCCTCCCC GGG GCGGGGGCG            TTTAAGACTGACCGG  73 62
D3880_RS09205 NONE
D3880_RS09210 1991357 .. 1991371 +  -5.7  -4.07568   CAGCCTGGGTTTCTA               GGTTC TGGCT GAACC               TTTTGGAGCACGCAC  65 25
D3880_RS09215 1993605 .. 1993617 +  -3.3  -4.00348   AGTTTGCTCAAGCGC                TACGC GCG GCGCA                TTTGATTGATTGGCC  59 8
D3880_RS09220 NONE
D3880_RS09225 NONE
        motD 1996424 .. 1996439 +  -3.2  -3.35679   TCCGTCGCCGGTGCA              CTGAAG CCGG CCTCAG               TTCTCGGTCAGGCGC  47 22
D3880_RS09235 1997296 .. 1997321 +  -3.1  -3.64933   CTCAAGTCCCTTGCC         GGTCCTGCCGA TAGC TAGGCAAGTCC          ATTTTTTCAGGTTGC  51 53
D3880_RS09240 1998185 .. 1998203 + -10.2  -3.12717   ACTGAAGAATTGACT             GTCTCGCC CTC GGCGGGGC             TCTGTGTTAATAGCT  65 60
D3880_RS09245 NONE
D3880_RS09250 1999420 .. 1999445 +  -8.2  -3.31792   CGGCCAGCTCGTCGT         CGCCCTTGGC GCTGAG GCTGGGGGCG          TTCTGGCCATCGTAG  58 284
        ccmA NONE
        ccmB NONE
D3880_RS09275 NONE
        ccmD NONE
        ccmE NONE
D3880_RS09290 NONE
D3880_RS09295 NONE
D3880_RS09300 NONE
        ccmI NONE
D3880_RS22690 2008769 .. 2008780 +  -7.2  -2.87564   GCAGTTGCGACATGA                CGGC GTCG GCCG                 TCTGTACCGAGGTCG  50 204
D3880_RS09355 2019065 .. 2019083 + -14.6   -4.8048   AGCGATAACGAAAAA             GGCGCGAT CGA ATCGCGCC             TTTTTCGTGTCCGGG 100 127
        moaA 2021212 .. 2021224 +  -3.4  -3.10344   TTGCTTCATCTCGCC                GTAC TACTC GTAC                TGTCTTCGCTGAAGC  43 70
D3880_RS09370 2022918 .. 2022939 +  -2.9  -3.35283   CCCGGAGTTCCAAGG           CATTCACCG ATCA TGGAGAGTG            TTGTGAAGTCCTTAT  44 247
D3880_RS09375 2023803 .. 2023841 +  -2.4  -4.14243   CGGCAGTGACAGAAA   CTAGAGTGTCAATTTGCT ATC ACTGAGTTGCCCCTCTAG   TTTTACACTCCGGTG  57 59
D3880_RS09380 NONE
D3880_RS09385 NONE
D3880_RS09390 NONE
D3880_RS09395 2028379 .. 2028396 +  -2.6  -5.00616   TGGTGCAGGTGGTCA             CGGCCT ACGGTC AGGGCG              TTTTTTCCACGCCCA  75 486
D3880_RS09410 NONE
        cheD NONE
D3880_RS09420 2032759 .. 2032780 + -15.9  -3.85817   GGAGGCAGTGAAAAA           CAAGGCGCC CGTA GGCGCCTTG            TTTGTGCAGCGGAGT  95 44
        uraH 2041633 .. 2041651 +  -8.8  -5.76949   CTTAGAAGAGTCCTT             GCCCGC CCACACT GCGGGC             TTTTTTTTGACGCTG 100 76
D3880_RS09475 2045775 .. 2045792 + -14.1  -4.98531   GCCGGCAAACAAGAA             GCCCCGC AGAT GCGGGGC              TTTTTCGTTTCCAAC 100 45
D3880_RS09510 NONE
         smc 2060592 .. 2060605 +  -9.5  -4.37199   TGTCCGCGTTTCAGG               GGGCG AGGA CGCCC                TTTCTTCATTATCAT  82 147
        zipA 2061514 .. 2061531 + -11.3  -4.54727   CGTGTCAGAGCGAAA             GAGCAGC CGAG GCTGCTC              TTTTCGTTTGCGAGA  95 52
        ligA 2064053 .. 2064090 +  -7.7  -3.65812   CATCGCACGGAGCCC   GGC-TCGGCGCCGC TGGTGGGTTAC GCGGCGCGGATGCC   TTGTCTTGGGGCCAA  64 142
D3880_RS09540 NONE
D3880_RS09545 NONE
D3880_RS09550 NONE
        cpaB NONE
D3880_RS09560 NONE
D3880_RS09565 NONE
D3880_RS09570 NONE
D3880_RS09575 NONE
D3880_RS09580 NONE
D3880_RS09585 NONE
D3880_RS09590 NONE
D3880_RS09595 NONE
D3880_RS09600 NONE
D3880_RS09605 2079604 .. 2079630 +  -8.7  -4.31737   GGCGCTCGGCGACCT         TCAGCTTGCCG ATACC CGGCAGGGTGA         TTTCTTCATGATTTT  79 489
         ffs 2080392 .. 2080410 +  -4.6  -4.36914   GCCTCCAATATCTAA             GTCTTTAA TTC TAAAAGAC             TTTTCTCGCCAAAAA  68 43
        dnaX NONE
D3880_RS09630 2083241 .. 2083267 +  -2.8  -3.54424   AGACCGCAGCCGTAG         GATGGGTTGAGC AAC GCGATACCCGTC         TTTCGCGCCCTGAGC  47 50
        recR 2083963 .. 2083973 +  -5.4  -3.51411   CGGGGCGGCGACCGA                 TCAG CCT CTGA                 TTCATTTGCCGCGCT  55 15
D3880_RS09640 2085283 .. 2085295 +  -9.1   -3.6502   GAGGGCTTCTGTCAT                GGCAG CGG CTGCC                TTTACCTGGAAAATG  68 79
D3880_RS09645 2086840 .. 2086854 +    -7  -4.15044   CGGACCGCTGGCTTC               CGCGGC CGC GCCGCC               TTTCTTGAACACCGG  67 275
D3880_RS09695 NONE
D3880_RS09700 2097392 .. 2097416 + -13.6  -4.18018   GATGACCATGAAAAA         GCCCCGG-TGC TCAC GCAGCCGGGGC          TTTTCGGTGCCGGAC 100 36
D3880_RS09715 2101041 .. 2101069 + -18.9  -3.53012   GTGAAGAAGCCGTTG        CGCGGGCTGAACA GGG TGGTCAGCCCGCG        TTTCCAGGCGCGCCA  95 380
D3880_RS09785 2114913 .. 2114941 +  -5.4  -4.13767   TCTGTAGGAGCCGTA       G-GGTGGATGT CGCTTTTC ACATCCACCGC        TTTTCCGGTGGAAAA  65 50
        rlmM 2120830 .. 2120842 +  -6.2  -3.77666   TCCCCCTCTTGATTG                GCGG GATAG CCGC                TTTAGGTTGGGTATC  60 198
D3880_RS09805 2121862 .. 2121878 +  -3.5  -3.54879   CCTCGGTGAGAAAGG              CGGGCTC GTT GCGGCCG              TGTTTGGGTTTTGGC  51 178
D3880_RS09815 2124224 .. 2124240 +  -3.6  -4.58283   TTTTTCGATAGGTAT              GGCGGA TTTTT TGCGCC              TTTTTAAACGGATTA  70 48
D3880_RS09820 2124764 .. 2124780 + -13.7  -4.62168   GCGAGTCAAACAAAA              GCCCGCA TGA TGCGGGC              TTTTGTCGTTTAGGT 100 47
D3880_RS09850 2130048 .. 2130069 +  -7.9  -3.22476   CCGGGCCGACGATGC           GATAGCGCG ACTC CGCGCCGTC            TTCGTCCTCGATGGT  56 219
D3880_RS09870 NONE
D3880_RS09875 2134545 .. 2134561 +  -3.6  -3.30124   AGCGAAGCGGCGAGC              GTCCGG ACTGG TCGGGC              TTCTGAACCCTCCCA  47 3
D3880_RS09880 2135621 .. 2135646 +  -8.3   -5.5112   GGCGCTAACTTAAAA         CCCGTTGTGTGC GAA GCAT-CAGCGGG         TTTTTTATTGCTGCA 100 46
D3880_RS09890 NONE
D3880_RS09895 2137946 .. 2137965 + -16.4  -4.64383   TTTGAGATAAAAAAA            CGCCGGGC AATT GCCCGGCG             TTTTCATTTCTGCTT 100 45
D3880_RS09910 2140012 .. 2140032 +  -3.9  -3.00704   GGCATTGCGTCGGCC            CGTCGAGGA GCT TCCCTGATG            TCTGATTTGAAACGT  43 7
D3880_RS09915 NONE
D3880_RS09920 2141914 .. 2141931 +  -9.8   -3.2653   ACCTGCCGCTCATCC             CGGCGC GGCCTG GCGCCG              TTGCGTTGTGCTTGG  65 40
D3880_RS09925 2142554 .. 2142565 +  -4.4  -3.48395   GCTTTATTCTTCTAA                CCAT TAAT ATGG                 TTATATGACGCCGCT  52 83
        cysB 2143617 .. 2143635 + -13.1   -5.4251   AGCAACACAAAAAAA             GCCCGGC ACTTG GCCGGGC             TTTTTTGTGTGTAAA 100 48
        thrH 2145568 .. 2145583 + -11.8  -4.98531   CCAGCTCAAGAAAAA              GCCCGC TTCG GCGGGC               TTTTTCGTTTCCGGC 100 45
D3880_RS09955 NONE
D3880_RS09960 2152693 .. 2152732 +  -2.6  -2.69977   AGATCGGCGTGAGCC  GGTCCAGCTGTCGGTGAC AGGA GTCCGCGGCAGCAAAACC   TCATCTGTGAACTGT  39 189
D3880_RS09965 2153255 .. 2153288 + -19.9  -3.40403   ACCGCACCAGCCTCG     GAAAACCTTATCAGC CTCG GCTGATAAGGTTTTC      TTCTGATAAGAAAAG 100 49
D3880_RS09970 NONE
D3880_RS09975 NONE
D3880_RS09980 NONE
D3880_RS09985 2157974 .. 2157992 + -13.1  -4.72272   CGTGAAAAGCAAAAA             GCCCGGC TAGCT GCCGGGC             TTTTTGCTGAGCGCA 100 49
D3880_RS10005 NONE
        prpB 2162988 .. 2162998 +  -2.4  -3.05384   ACGACAAGAAGCGAC                 ACCG AAC CGGA                 TTACATGAGGAGAGA  41 83
        prpC NONE
        acnD 2166829 .. 2166858 + -19.3  -3.61398   TGCTTGCTCTGACAA       TCGACCCGGTGCC GCAA GGCCCCGGGTCGA        TTGTTAAACGGAGCA 100 63
        prpF 2168161 .. 2168180 + -10.6  -4.98531   CGGGAAAACGAAAAA            GCCGGAGC GAAA GCCCCGGC             TTTTTCGTTTCAGCA 100 49
        prpD 2169874 .. 2169890 + -13.7   -5.5112   GCAGGAAAAGAAAAA              GCCCGCA TTT TGCGGGC              TTTTTTGTTGCTCGG 100 87
        ppsA 2173275 .. 2173294 +   -15    -5.252   TCCTCACCATAAAAG            GGGCGGGA TTGA TCCCGCCC             TTTTTTGTGCCAGTA 100 48
D3880_RS10050 2174420 .. 2174432 +  -4.1  -3.96624   GATGTGACGCGGAGT                TGGCT TGC AGTCA                TTTCTGCTGCCACTG  56 142
D3880_RS10055 2174765 .. 2174777 +  -4.1  -4.11394   CTCTGACACTGTTTT                CTCTT TAC AGGAG                TTTTCCCCATGCAAT  59 35
        rraA 2175285 .. 2175302 +  -3.3  -4.83615   AGTAACGAGCAGAAA             GCCTGGT GCCA ACCGGGG              TTTTTCTGAGGGCTG  74 36
D3880_RS10065 2176310 .. 2176325 +  -2.4  -2.91288   TCAGTGGTGGTTGTT              CCGCCG CTTG CGTTGG               GTTTGATGTGACTTG  40 4
D3880_RS10070 NONE
D3880_RS10075 2177508 .. 2177518 +  -8.2  -3.06671   TGGCCCGGGCTCCGG                 GCCG TGG CGGC                 TATTCACCTGACTGT  56 76
        sigX 2178160 .. 2178171 +  -4.4  -3.08813   AAGATAGCTCCAATC                GTTC GGGC GAAC                 TCTGTTACAATCGCC  46 47
D3880_RS10085 2179294 .. 2179321 + -18.6  -4.05033   GGCGTTGAGTGGTGA        GAAAAACCCGGC CTCG GCCGGGTTTTTC         TTTATCTGCACTCCG 100 42
D3880_RS10090 2180116 .. 2180133 + -14.1   -5.4505   CTGTGAAGAGTAAAA             CGGCGCC CTGA GGCGCCG              TTTTTTCTTAGACGC 100 15
D3880_RS10100 2181693 .. 2181710 + -10.5   -5.4505   CCTACCAAATTTAAA             GGGTCGC GTAA GCGGCCC              TTTTTTATTGCGCAG 100 34
        thrS NONE
        infC 2184388 .. 2184401 +  -3.1  -3.60094   GAAAATAATCTCCAG               GGCACT GGC AG-GCC               TTGTGGTTATGTGTA  51 33
        rpmI 2184621 .. 2184633 +  -4.7  -3.53745   CTCGTGTAGAGCGTT                CGCTG CGT CTGCG                TTGATTTCCGGTCTA  52 9
        rplT 2185068 .. 2185097 + -16.6  -3.88766   GCTAAACGTCACCAA       TAGGGGAAGAGC CTTCGT GCTCTTCCCCTA        TTTCGTATCTGGAGT 100 70
        pheS NONE
        pheT NONE
        ihfA NONE
D3880_RS10140 2189249 .. 2189274 +    -4  -3.78329   AATGTATAGTTCGAT         CCGCTTTC AGTAGTAGTC GAGAGCGG          TTTGACTTAGTCGGG  54 78
D3880_RS10145 2189378 .. 2189401 + -11.8  -5.93809   AATAACCCTAGAAAA          TCCAGTCACT TAGC GGTGACTGGA           TTTTTTTTATGGGCA 100 41
D3880_RS10200 NONE
D3880_RS10205 2206866 .. 2206877 +  -2.2  -4.07568   TGAAAGAATCATGTA                GTAG ATAT CTGC                 TTTTGGCGGAAGGAA  57 45
D3880_RS22715 2207617 .. 2207630 +  -2.4  -4.17048   GCAAAGGAAACTGCA               TCAG AGGGTG CTGA                TTATTTTGCCGAAAA  60 99
D3880_RS23065 2218474 .. 2218505 + -11.6  -4.45117   TTAATTGTGGTATGG      CGTGGGGTCTTCTCT TTA AG-GATGGCCCCACG      TTTCTTTCAGCTGTC  95 44
D3880_RS10215 2220393 .. 2220412 +  -7.8   -3.6284   TCCATGCGCAGCAGT            GCTTGGGCG ATC CGCCC-GGC            TTTGCCGTCGTGCTT  63 337
D3880_RS10235 NONE
D3880_RS10240 2224291 .. 2224348 +  -7.6  -3.12895   GTCGACCAAGGCCCC GTACC-CGCCGAGCACGGTGGCGGTGAC TTCA GCCAT-GCCGCCGTGCTGGTCGAGGAGC TGTCTTGATCACAGG  57 288
D3880_RS10290 NONE
D3880_RS10295 NONE
D3880_RS10300 NONE
D3880_RS10305 NONE
D3880_RS10310 2243111 .. 2243132 +  -5.7  -3.14881   AAGAAGAGCGGGCCC           GGCGCGCGT CCTG ACGCCAGCC            TTGGTAGGCGGATTC  50 12
D3880_RS10315 NONE
D3880_RS10320 2245776 .. 2245802 + -12.3  -2.53213   CCAGCACCCGATGTT         TCGGAAGGCCG GCAAG CGGCCTTCCAA         TCCCTTCCAAGCTTC  68 87
D3880_RS10325 NONE
D3880_RS10330 2249302 .. 2249329 +   -20  -2.73159   ATCTGAAGTAAACGA        CACAACGCCCTG CATG CAGGGCGTTGTG         CTTTCCGGACCTTGC  95 45
D3880_RS10335 2252205 .. 2252250 +  -2.6  -3.19463   CTGTGCCGGTGTTCT TGTC-GGGC-TTC-CGCCACCTG ATC TGGGTGGCGAGGATGCACAGGCA TTACTCAATCATAAG  43 104
D3880_RS10340 2253685 .. 2253706 + -12.3  -3.72984   GCTAGTAATTGGACC           TGGCTCGAG CCTG CTCGGGCCA            TTTCGCTCCTTATCG  85 36
D3880_RS10345 NONE
D3880_RS10350 NONE
D3880_RS10355 2257274 .. 2257293 + -10.6  -3.90318   CAGCACTTTGAACTC            GCCGGACC GTCA GGCCCGGC             TTTCTAACGTCCTGC  78 42
D3880_RS10360 2258936 .. 2258951 + -11.8    -5.252   CCAGTTTTCTTGCAG              CCGGGC CTCG GCCCGG               TTTTTTCTCGGAGTA 100 49
D3880_RS10365 NONE
D3880_RS10370 2260689 .. 2260713 + -18.7  -3.85698   ACAGGCGTAAGACAA          GAAACCCGCTC ATC GAGCGGGTTTC          TTTATGCGCGAGCAA 100 48
        modA NONE
        modB NONE
        modC 2263585 .. 2263603 +   -16  -4.27316   CCACAACAATGAAAA             GCCCGCCA ACT TGGCGGGC             TTTTCAGTTCAGCAG 100 57
D3880_RS10425 2275426 .. 2275440 +  -2.8  -4.39426   ACCAAAGCCGGATAA               ACTAGA CTC TCTAGA               TTTTCTAGGACTGTA  63 214
D3880_RS10445 2278147 .. 2278159 +  -5.5  -3.02829   CCCGTGAACCTTGCG                TTGCG GCC CGCAG                TCTTAGCCCGGTCTC  49 156
D3880_RS10450 2279556 .. 2279567 +  -2.2  -2.60725   AGACTGTGTAAAAAC                GTTG GCAT CGAC                 CTTGCTGTGATTTGA  38 445
D3880_RS10465 2281666 .. 2281696 +  -5.3  -2.78679   GACGACATCTTGCTG      CGGCCCT-CGGCGG AGGG CTGACGCGGGGCTG       GTTTCGCTGCCCGGC  46 5
        sufB 2283326 .. 2283344 +  -6.6  -3.55563   GAGCCTGGAGGGTTG             CGTCGGCT GAG GGCCGAGG             TTTGAAGGCTGAGGT  58 16
        sufC 2284119 .. 2284146 +  -2.5  -3.14344   CGACAACCGGAGCCA        CGCCATGAACG GCGAAG CGAGCACGGCG         TTCCTCGCCCGCCTC  43 18
        sufD NONE
D3880_RS10485 NONE
D3880_RS10490 NONE
        sufT NONE
D3880_RS10500 2290279 .. 2290297 + -12.4  -4.18018   TTTGAACTTGGGAAT             CCACGTCC TTA GGGCGTGG             TTTTGAGTAACCGGC  95 259
D3880_RS10520 NONE
D3880_RS10525 2293017 .. 2293029 +  -4.7  -3.34522   AAGTCAGGATGACTT                GCGAG GAG CCCGC                TTAATTGGAGCCTAT  49 184
D3880_RS10530 2293827 .. 2293842 +  -3.9  -3.53012   GCAGCCCGGTGATGT              CGGCC TGTATC GGCTG               TTTGCACACGCAACG  49 129
D3880_RS10570 2300249 .. 2300294 + -16.3  -3.27022   CGCGAACTGACGCAC CATCGCTT-CGCCATCGATGAT TGC AACAGCGATGGCGTAGGCGATG TTCATCTGCGCTGCG  85 433
D3880_RS10580 2300922 .. 2300943 +  -9.4  -3.02263   ATCGAGGCGGCTTGA           TCGGCGGC AGCGAC GCCGCTGA            TGTTGGGGGCGATGT  57 218
D3880_RS10590 NONE
D3880_RS10595 2303945 .. 2303959 +  -5.6   -3.6471   GAATTAAACAGATAG               CGGATC AGG GAGCCG               TTCTCTCGTTTGGAA  57 26
D3880_RS10620 2307601 .. 2307639 +  -3.1   -3.4072   AGAGCGTTGGCTGTC  CGATCGC-TCCTGTCTGT AGGG GCCGATAGGACGTGACCG   TTATGCTGAGCGCTC  47 47
D3880_RS10640 2313941 .. 2313955 +  -2.7  -3.09516   TGAACAACGAACTTC               CCCAC CAACC GAGGG               TTACATCATGAGCAA  41 38
D3880_RS10645 2315044 .. 2315054 +  -2.4  -4.09685   GGCTCTTGGTGGAAA                 ACGC TTC GCGG                 TTTTCCACCCTACAA  57 201
D3880_RS10650 2316011 .. 2316036 + -14.8   -5.1287   GCGGTTCGACTCGGA         GCCCCGTGAA CTCTAT TTCACGGGGC          TTTTTTGCGTCTGCA 100 43
D3880_RS10655 NONE
D3880_RS10660 NONE
D3880_RS10665 2318361 .. 2318393 + -10.6  -5.57396   GCATGCAAATTTTCT      GGCCGTTCTTCTTC AGGCA GGGGAGGAATGGCC      TTTTTTATTCATTGT 100 72
D3880_RS10670 2319850 .. 2319865 + -11.8  -5.30616   TCACGGCAGGAGAAA              CCCGGC TTCG GCCGGG               TTTTTCTTTGCCTGA 100 53
D3880_RS10765 2343771 .. 2343794 + -16.8  -3.58726   CCGGCTTGCAGACAA          CAAAGCCGCC AATA GGCGGCTTTG           TTGTCTGTGGGGGAG 100 43
D3880_RS10775 NONE
D3880_RS10780 2346240 .. 2346265 +  -8.9  -2.88579   CGAACGATCGGCGAT         GGAGCCGGCAT GGGT ATGCCGACGCC          TGTCTCGGACCTTGA  59 355
D3880_RS10800 NONE
        cysS 2350733 .. 2350767 + -20.3  -3.74224   ATAGTTTGCTTCGCG     CATAAAAAAGGCCGC TTCAT GCGGCCTTTTTTATG     TTTGCATACTTTCAA 100 37
D3880_RS10815 2351973 .. 2351986 +  -2.3  -3.74224   CGCAGGTTCGAGTCC               TGCCG GGTG CGCCA                TTTGGCTGCTTTGGC  52 12
D3880_RS10820 2352105 .. 2352129 + -16.5  -3.52918   CCCCATATTCGAAAA          GACGCCAGGTT CTC AGCCTGGCGTC          TTGCTTTAAAGCTTG  93 36
D3880_RS10825 2352227 .. 2352243 +  -2.2  -3.10082   CGAGTCTCTCCGTCC              GCACCA TCTTT TAGTGC              TTCCCTCCCGTTTTT  41 20
         tig 2353699 .. 2353729 + -10.6  -2.71731   CCTCGTTCGAGCACA      C-CATAAGCCAGC CTTCGT GCTGGCTTATGCG       TCCTTGAGACATGAC  61 48
        clpP 2354447 .. 2354468 +  -5.7  -3.80858   GCTGGCCGACCGCTC           CGCGGGCTT GAAA ATGCCCGCA            TTTGCCTTCATCTTG  60 64
        clpX 2355814 .. 2355829 + -11.8  -4.36903   ACACTCAGCAAACAA              GGGGCC TGCG GGCCCC               TTTGTATTTCCTGCC  93 44
         lon NONE
        hupB 2358770 .. 2358786 +  -3.6  -3.72576   CCTTACCCAACCACA              TCGGGC GATTG GCTCGG              TTTGGTCGCGGAGCG  54 53
D3880_RS10855 2358883 .. 2358902 + -13.6  -4.38927   CGCCAGTTACGAGAA            GGCGCATC CTCG GATGCGCC             TTTCTTATATCCGGA 100 36
D3880_RS10860 2360871 .. 2360888 + -12.7  -5.06816   ACCGCTCAATAAAAA             GGCCGCT GAAA AGCGGCC              TTTTTATTGAGGCAT 100 51
D3880_RS10895 2370158 .. 2370178 + -11.1  -3.09671   GGGTGAGGGTTTGCC            CCGGGCG CAGCGCC CGCCCGG            TATTGGGGTTCCAGT  64 58
D3880_RS10910 NONE
        rnhA NONE
        dnaQ 2374600 .. 2374630 +  -3.9   -4.2558   GAGATCTGATATATG      CCTCAGCGTGCCGA CTTA TCGGCGCGC-GACC       TTTTCGTACAGGCTG  62 32
D3880_RS10925 NONE
D3880_RS10930 2378501 .. 2378512 +  -7.2  -3.36694   AACAATATCTATTAT                GCGC GCCC GCGC                 TGTTTGAGGATGCGT  56 169
D3880_RS10935 NONE
D3880_RS10940 NONE
        nudC 2382062 .. 2382077 +  -3.2  -3.22223   CGAGACGATGAACAC              TGCCAGC GCC GC-GGCG              TTGCTGATGAAGTTC  46 185
D3880_RS10955 2383419 .. 2383434 + -10.4  -5.14563   AGCCGCATGAAAAAA              GGGACC CGTG GGTCCC               TTTTTTCATGCCGGG 100 45
        sohB 2387866 .. 2387896 +  -4.7  -2.73159   TCAGCGGTTCTGGTA      ATCGAGAGCTCTGG TAAT CAAGAGCTC-CGAC       ATTTAAGGAGGTTGG  43 25
D3880_RS10985 2388926 .. 2388946 + -18.3  -4.45544   AACGCGACACTGAAA            GGCCCGGCA AGC TGCCGGGCC            TTTTCGTTAGTGGCC 100 45
D3880_RS11030 2395431 .. 2395446 +    -6  -4.77757   CATGATCCCTTTCTA              ACCGCC TTCG GGCGGC               TTTTCATTTTTCCCG  81 81
D3880_RS11035 2395943 .. 2395960 + -14.1  -4.11484   TTCGTGCATGAAAAA             GCCCCGC AATT GCGGGGC              TTTTCAAGGCTTGAA  95 83
D3880_RS11050 2399836 .. 2399851 +  -2.5  -3.95219   CTTTGCACACCAAAC              GCG-GC GGCCA GCACGC              TTTGTAGCGTTTGGC  56 173
D3880_RS11070 2403499 .. 2403524 +  -4.7  -3.21924   CCGCTCGCCGGCAGG         GCGCTGGAATTC ATC GGCTTCCAG-GC         TGTTGTAGGGAATCA  49 439
D3880_RS11085 2404885 .. 2404909 + -18.7  -4.58283   AGGCACGCATCAGAA          CAAAGCCCGCA TTT TGCGGGCTTTG          TTTTTGCGGCGATTG 100 64
D3880_RS11095 NONE
        nfuA 2411823 .. 2411840 +  -9.8  -5.63517   GCACTCCGGTAAAAA             GGCGGC CCGATA GCCGCC              TTTTTTATTTCACCA 100 44
D3880_RS11130 2418784 .. 2418816 +  -2.5  -4.07568   AACACAGGGCAACGC      CGCCATTTCTCGGGC TTT GCTTGAGGCGAGGTG      TTTTGACAGCGGAAC  57 164
D3880_RS11140 2420731 .. 2420787 +  -7.5  -4.60924   GATGGGCTAGAGGCA TCCGG--CGGCT-AGCTAAAGGCGCGCT TGCG AGTGCGCCTTTAGCTGAGTGGAGCTGGG TTTTTGCGGCGTTTC  78 39
D3880_RS11145 2421762 .. 2421776 +  -5.6  -3.02511   CAAGACAAGCGCTGA               GCCGAG CCA CTAGGC               TCTTGCGGAAATACA  49 26
D3880_RS11150 2423195 .. 2423205 +  -5.4  -2.84602   CAGCCGCCTGGCGGA                 CTTC ATG GAAG                 CTTTGATGCGCTAGA  48 1
D3880_RS11155 NONE
D3880_RS11160 2424771 .. 2424811 + -26.1  -3.21912   TCGGGCAGCTGAGTT  GATCGCCCGGCGCCGGCTG TTC CCGCTGGCGCCGGGCGCTC  TTCGTCACTTGGCGC 100 29
D3880_RS11165 2425879 .. 2425891 +  -3.4  -3.61398   GCCGAGGAAGTCGAG                GATG GCGAA CATC                TTGTTGCCCGCCACC  49 304
D3880_RS11180 2428019 .. 2428030 +  -7.2  -3.28637   ATGGCCACGTTGAAG                CCGC CCAG GCGG                 TTGATGCTGTTGATG  54 395
D3880_RS11195 NONE
D3880_RS11200 2433165 .. 2433176 +  -3.6  -3.83026   ACCGCGGGCTGAGAC                CGGC ATGG GTCG                 TTTCCTGTGCCGCGA  54 29
D3880_RS11205 2434306 .. 2434325 +  -3.4  -3.14344   ACACCGAGCTACTGG            GGGCGCGA ATGA TCGGGGCC             TTCCTGCAGGCGATG  45 14
D3880_RS11210 2435700 .. 2435720 +  -6.7  -4.15044   GGCCAGCACGTCGAA            GGCCTCGCC GGC GGCGATGCG            TTTCTTCAGCGCGGC  67 236
D3880_RS11220 2437160 .. 2437172 +  -4.7  -2.91997   GACGCTCACTGTACC                GGGCG ATC CGCCG                TCGTTCTCTCTACAG  45 62
D3880_RS11225 2438113 .. 2438135 + -11.3  -2.74012   CACTGTAAGAGGAGC           CCGCAGGAG CCCGA CTTCTGCGG           TCGTTCGAATAGTCA  65 322
D3880_RS11230 2438681 .. 2438733 +   -17  -3.09803   TGACGAGTTATCCGC GACCGGCTTGTGGCTGGCGTACTCC CGTA GCCGTACGCCAGCCGCAGG-CGGAC TGTTCGCTGCGCTTC  87 38
D3880_RS11295 2457594 .. 2457604 +  -8.2  -2.61264   GAAGCGGCGGACCCG                 GCCC GCT GGGC                 GTTATCGGTAAACCC  52 72
D3880_RS11300 NONE
D3880_RS11305 NONE
D3880_RS11310 2461545 .. 2461565 +  -6.7  -3.85698   GGCCGCCGCGCCCAT            CTCGCGGCC GAC GCCCGAGAG            TTTGTAACCGCCGAA  64 235
        peaA NONE
        peaB NONE
        qhpC NONE
        peaD NONE
D3880_RS11345 NONE
D3880_RS11350 2471403 .. 2471428 +  -5.4  -3.28924   CCATCCGACGGCGTC         CCCTGGGT CCCAGTGACT GCCCAGGG          TTGTCAAAAACGCTC  52 10
D3880_RS11355 NONE
D3880_RS11360 2474096 .. 2474126 +  -3.8  -2.74144   AAAGACCAAGGCAGC       CGGCTTCCCCGGAT GGC ATCCGGGCTAGAGG       ATTTGGCAATGAGGA  41 139
D3880_RS11365 NONE
D3880_RS11370 2476757 .. 2476779 +  -5.4  -3.40403   CGGCAGGAAGGCATG           CGCGCTGACC TTT GCTCGGCGAG           TTGTCGTACGGAACC  52 297
D3880_RS11380 2479171 .. 2479200 + -25.1  -3.89346   TGAGTGCCGCTTTAA       CGCCAAGGCCCGC AATT GCGGGCCTTGGCG        TTTGTGGGCTGCAGG 100 38
D3880_RS11385 NONE
D3880_RS11390 2480965 .. 2480978 +  -3.7  -3.64703   GATTCGCCATAGCCT               GGCTG CTGT CTGCC                TTTCACTCGCCGCCG  51 127
D3880_RS11395 2481558 .. 2481568 +  -5.4  -4.07687   AACTCTGGCCACAGG                 CATC GAG GATG                 TTTTAGCCCCGGGCT  65 81
D3880_RS11400 2482650 .. 2482681 + -20.2  -2.77899   CGCCTTGACAAGGGT      TGCCCCGTGGTCAG TTCG CTGACCGCGGGGCG       TAGTTGATGGGGGCG  95 47
D3880_RS11415 2486168 .. 2486180 +  -4.7   -3.7941   CAGCACCCGCTCGAG                GTCGC GCT GCGCC                TTGTTGTCCAGCGTC  58 417
D3880_RS11430 2489418 .. 2489433 +  -4.6  -2.57013   CAACCCGCGCCCGGC              GGCGCT GGCC AGCGCA               TAGCTTGGGTTGGGG  43 7
D3880_RS11435 NONE
D3880_RS11440 NONE
         tpx 2495700 .. 2495719 + -10.7  -5.38958   CGGCAATATTAAAAA            CGGCCTG CTTAGT CAGGCCG             TTTTTATTTGTGCGT 100 45
D3880_RS11450 2497331 .. 2497354 +  -2.3  -3.17051   GCCAAAGCGGCAAAA          GCCGGCGTA TGAACC TGTCCCGGC           TGTTCATCCTCCGCC  43 14
D3880_RS11455 2500443 .. 2500454 +  -2.2  -4.26903   GGTGGTGGTATGAGC                GC-GC CGA GCTGC                TTTTCCTCCCCTCGC  60 28
D3880_RS11460 2503825 .. 2503848 +  -5.4  -4.33258   TCCTGCGCTCACGAC          GGTTTC-ACAG CGG TTGTTGAAACC          TTTGTCTTTGGCCGT  71 150
D3880_RS11465 2505557 .. 2505592 + -21.8  -3.08133   CCACGCCAAAAGCAA    ACGCCGCCCGCAAGCC GGTT GGCCTGCGGGCGGCGC     TTGGCTCCCTCCCTA 100 272
D3880_RS11480 NONE
D3880_RS11485 2512396 .. 2512430 +  -3.4  -2.89602   CCGGGCCAGCATTGA     TGCGCGAACGTCGCTC TAC GTGTGGTTTTTGCGCG     GTTTCGTCTAGCGCC  42 26
D3880_RS11490 2513957 .. 2513985 +  -6.7  -3.53012   TACTGGGCGTTACAG        CGCTTGGAATGTG CAG CAAATTCGAGGCG        TTTCAAACGGCCAGA  58 511
D3880_RS11510 NONE
D3880_RS11515 NONE
D3880_RS11520 NONE
D3880_RS11525 NONE
D3880_RS11530 2520534 .. 2520550 +  -3.5  -3.73224   CACCAAGGTGGCCAC              CACGCCG AGC CGGCGCA              TTTGCTGGCGAATCC  54 406
D3880_RS11550 2524610 .. 2524620 +  -5.4  -3.56844   ATGGCGAATTTATTC                 TCCA ATA TGGA                 TCTTTAGTTCATCCC  57 262
D3880_RS22725 2527569 .. 2527579 +  -4.6  -3.28712   GGCAGACATTGCGGA                 TGGC TTT GCCG                 TTGTCACGGCGGAAG  49 315
D3880_RS22930 NONE
D3880_RS22935 2530998 .. 2531009 +  -5.8  -3.54424   GGAAATGCCATCGTC                TGCC TCAC GGCA                 TTTCAAACCATCCAG  54 493
D3880_RS11595 2532974 .. 2533011 + -10.6  -2.90392   GTTTGGCCTCCCCTA   CCGTGCCTGCTGAG-GG TCGCC CTACTCAGCAGCCGCGG   TGTCCTTCGCCCGTA  62 242
D3880_RS11610 2536599 .. 2536611 +  -7.7  -3.02511   CACGCCGCGTAAGCG                CTCGA TGA TCGAG                TCTTGCGGGCGTACC  56 259
D3880_RS11615 NONE
D3880_RS11620 2540463 .. 2540473 +  -2.4  -2.53876   ACCTTGCGCCACATG                 GAGG TAG CCAC                 TACATTGACATCAAC  37 225
D3880_RS11625 NONE
D3880_RS11630 2543169 .. 2543185 +  -4.4  -2.94595   GCGGGCCATGAAATC              CCTCTA CCGGA TGGAGG              TGTCTAGTGAGGCTT  45 89
D3880_RS11635 2544436 .. 2544446 +  -5.4  -4.11216   ACAAAAACAGGACGG                 CCAT GGG ATGG                 TTTTACCCATGACCG  65 118
D3880_RS11640 2544896 .. 2544923 +  -4.8  -4.20516   CTGTTGGCGTCGTAG        CCGT-ATTGGCTG TTC CAGCCATCGACGG        TTTGTTCGGTCAGGC  66 260
D3880_RS11675 2549004 .. 2549018 +  -6.4  -2.78679   TGATAGCGGCAGTAC               CTTTCC GCC GGAGAG               CTTTGGATCGAAGAG  50 346
D3880_RS11710 2561488 .. 2561518 +   -14  -3.10715   AGATTCCATGTCAAT       CAGCCGTGGCGACT CTT GGTCGATACGGCTG       TTGGCTGGTCATCAG  76 176
D3880_RS11755 NONE
D3880_RS11760 2569050 .. 2569064 +  -5.6  -3.30441   ACCAACGGTTGGGGG               CGCACC ATC GGTGAG               TTCTGAGGCGTGATC  52 5
D3880_RS11765 2570046 .. 2570057 +  -5.8   -3.5393   CGGGATGCTCGGCTG                CCAC ATCC GTGG                 TTTCACCCCGATCCT  54 172
D3880_RS11780 2573908 .. 2573920 +  -7.7  -3.31322   CCGCGAAACGTCTGA                GATCG AAT CGATC                TTGTCGGGGGTTAAA  59 67
D3880_RS11860 2593726 .. 2593749 +  -3.7  -2.52464   GAAGAAGATGGCCGG          CGAGCGCCT GGACTG AGGCGCGCC           TCAATTCAGGCGGCG  40 10
D3880_RS11885 2599383 .. 2599397 +  -2.8  -3.33696   GGCCAGTTCTTCGAG               CAGG AGGAAAC CCTG               TTCGTTGACACCGCG  46 353
D3880_RS11935 2612960 .. 2612972 +  -3.3  -2.70932   CTCGACATAACGCAG                CGCTG ACT TGGCG                TCCTTCCAGCCGACA  40 134
D3880_RS11945 2615358 .. 2615371 +  -3.8  -3.39028   CGGACGCACAGACCA               CGGA CTATAA TCCG                TATTTCAGCGTTATC  47 389
D3880_RS11955 NONE
D3880_RS11960 NONE
D3880_RS11965 NONE
D3880_RS11970 2618768 .. 2618784 +  -5.2  -2.74144   TCGACTTTCAAATAG              CCAATT ATAAA AATTGG              ATTTAGCGATAAACC  45 386
D3880_RS22765 2636847 .. 2636870 +  -4.5   -3.3353   GAGCGCGCATTATTT          GCCTGAAGGC CGAGC GCCA-CAGGC          TATGTTTGTAAAGGG  49 20
D3880_RS12030 2637682 .. 2637714 +  -7.6  -3.67296   GCGAGAATAAACTTC      CCAGCCGGCGTAAC AATGG GTAACGGCGCCTGG      TTTCCCTGGGTCATG  64 133
D3880_RS12035 2638692 .. 2638708 + -11.5  -2.72379   GAAGCAGCGCAATCA              GCGGGGT CCG GCCCCGC              TGATTGCGGCCTTGA  65 41
D3880_RS12040 NONE
D3880_RS12045 2640750 .. 2640776 +  -8.7  -4.85599   ACTCCGACTTGTCGG         CAAACTCCCGC CCTGT GTGGGCGTTTG         TTTTTGTGGGGTGGG 100 280
D3880_RS12060 2643888 .. 2643898 +  -3.2  -3.74381   CAAGATTTTGCCGAG                 GTGT TGC GCAC                 TCTTTTGGCTTGAGT  54 2
D3880_RS12065 2645295 .. 2645309 +  -2.8  -3.87373   AGAGTTTGCCCATGA               TCGC CACGGAA GCGA               TTTATAGGCACTCTA  54 113
D3880_RS12070 2646481 .. 2646512 +  -5.7  -2.51547   CCTCGCCCCTTTTGC      AGACGCCGCGG CCAGTGCATT CCGCGGCGCCA       ATGTTCGTGTCACAA  45 48
D3880_RS12075 NONE
D3880_RS12080 NONE
D3880_RS12085 NONE
D3880_RS12090 2649970 .. 2649997 +    -4  -3.67976   ACGTCAGACGCAGGA        GGGCTGAGATGG ACAT CGACCTCAGCGC         TTTCCACTTCCTGCG  51 19
D3880_RS12095 2651562 .. 2651584 +  -2.6  -2.68719   AAAGCCTCAAACGGA           GGCCAGCC ATGAAGC GCCTGGTC           CTTCTGCTCTGCTGC  38 14
D3880_RS12100 NONE
D3880_RS12105 NONE
D3880_RS12110 2655670 .. 2655723 +  -9.7  -3.14132   CCTCCGGTGTAACGG C-CTGATGTA-CCTCCCGGGTGGCGC CGGCC GCGCTGCTCGGGAGGATACC-CAGCG TTCATACAAGGCCCC  61 65
D3880_RS12115 2658321 .. 2658332 +  -3.6  -3.53444   TGGCGCCAGAAGAAC                CGCG CTGT TGCG                 TTTGACAGCCCCTAC  49 68
D3880_RS12120 2661063 .. 2661110 +  -6.8  -3.14132   GTCAGCCCGCTCCAG GAGCAAGGCGGCGCCGGC AACCTGGCCTAA GCCGGCGCCTCAGGGCTC TTCGTCGCCGGCCAG  54 180
D3880_RS12130 NONE
D3880_RS12135 NONE
D3880_RS12140 2665875 .. 2665906 + -24.6  -3.53224   TCGCGCCCGCCATAA      CGACAACGGCCACC CTGG GGTGGCCGTTGTCG       TTTCAGAGCAAGCTC 100 42
D3880_RS12155 2668612 .. 2668629 + -12.7  -3.35679   CATCGGAAACGACAA             GGCCACC CGCA GGTGGCC              TTGTCGCTGAACCGC  76 64
D3880_RS12165 NONE
D3880_RS12170 NONE
D3880_RS12175 NONE
D3880_RS12180 NONE
D3880_RS12185 NONE
D3880_RS12190 2677417 .. 2677431 +  -2.8  -3.53091   CGTGGAGGATGTACT               CACC CTTGAGC GGTG               TTTCCAGCAGCGGCT  49 470
D3880_RS22770 2679070 .. 2679086 + -10.8  -3.61371   CATAGCCATAAAAAA              GCCCGC GCAGG GCGGGC              TTTGGGGTGGAGTTT  73 448
D3880_RS12260 2690556 .. 2690571 + -11.8   -4.7497   TAATGCCTCGATCAA              GCCCGC TTCG GCGGGC               TTTTTCATGCCTGCC 100 45
        tusD NONE
        tusC NONE
        tusB NONE
D3880_RS12280 NONE
D3880_RS12285 NONE
D3880_RS12290 2694133 .. 2694152 +  -3.4  -5.08824   TGCCGCGAAGGCCTC            GCGCCGTG GGTG CGCCGTGC             TTTTTTCACTGCCGC  80 43
        trxB 2703013 .. 2703041 +  -4.4  -2.57132   GACGACCTCTGAGGC        CGCAGGGCTGGT GTTGG ACCCGCCCTACC        CTTCTGCAGAGCCCG  43 29
         aat NONE
D3880_RS12335 2704508 .. 2704522 +  -2.1  -4.07885   CTCACCTGAAGCCCT              TGGCGG ACTA CC-CCA               TTTTCGGGCACAATG  57 32
        infA 2704826 .. 2704869 + -21.2  -3.22475   CGCGCGCTAAGCCAA TCCAAACAAAAACGCCCGGC ATCT GCCGGGCGTTTTTGTTTGTC TCTTGTACCGCTAGA 100 31
        cspD 2708057 .. 2708077 + -16.9  -5.06414   ATTTGACATAAAAAA            GGCCGGTCA ATT TGACCGGCC            TTTTTCTTGCCGCGG 100 51
D3880_RS12365 NONE
        mnmA NONE
        hflD 2711982 .. 2711994 +  -4.7  -4.85129   CTAATCGGCTAGCCG                CGGGC CGG GCGCG                TTTTTCATGTATGAT  78 68
        purB 2713442 .. 2713460 + -17.4  -5.27335   CCCCTCTTTTTTGCA             CGCCCGGC TGT GCCGGGCG             TTTTTATTTCAAAGG 100 45
D3880_RS12385 NONE
D3880_RS12390 NONE
D3880_RS12395 NONE
D3880_RS12400 2716705 .. 2716719 +  -2.7  -3.55622   CCGATCCGTGTTGTA               CAGCC CACAA GGCGG               TTTGACGAGATTGCG  47 211
D3880_RS12405 2718690 .. 2718709 + -13.6  -5.04249   GTGTGTTGATAAAAA            CCCCAGCA GAAA TGCTGGGG             TTTGTTTTTTGGGCA 100 79
D3880_RS12410 2720861 .. 2720884 + -10.2  -4.08064   CGACCAGCCCCTCTT          CGGCCGGCCA ACCA TGGCCGGTCA           TTTTCCCGCAGGCTT  80 49
D3880_RS12415 NONE
D3880_RS12420 NONE
        nuoC NONE
        nuoE NONE
        nuoF NONE
        nuoG NONE
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK NONE
        nuoL NONE
        nuoM NONE
        nuoN 2736280 .. 2736295 + -11.8   -5.4492   GCGAAAAACAAAAAA              CCCGGC CTAG GCCGGG               TTTTTTGTGTCTATC 100 46
D3880_RS12500 2743572 .. 2743608 +  -4.1  -3.07935   CTGATGGACCAGTTC    CGCGTATAGCCCGCCGC AAA GCAGCCGGCAACGCGAG    TTGCCTGGCTGCCCT  43 17
D3880_RS12505 2744449 .. 2744459 +  -8.2  -2.80994   GCTGACCCGCAAGCC                 GCCC AGC GGGC                 TGTCCTGCAATTGCA  54 127
D3880_RS12530 2748306 .. 2748329 +  -5.3  -4.50583   ATGGGTAAGCCATGG          CAGAGCTGT TAAACT ACAGCTCTA           TTTTCTGGTCGTGTT  74 67
        queD 2748732 .. 2748780 + -27.2  -3.53444   GCGGCGACTGATCCC GGC-CAGATACAAAAAAGCCACC TCAC GGTGGCTTTTTTGTATCTGCGCC TTTGCGAACGAGTGG 100 30
D3880_RS12590 NONE
D3880_RS12595 2760470 .. 2760485 +  -3.2  -3.55761   CGTGCGCACTGAGCC              CCAGAA AAGG TTCGGG               TTTGCCAGATAAGTA  49 241
D3880_RS12600 2761169 .. 2761187 + -10.2  -2.80816   AGGTTGTAGTTGACC             TCGCCGGC CTT GCCGGCAA             TCTGCTCGATACAGA  59 460
D3880_RS12620 2764774 .. 2764832 +  -7.4  -3.21395   CGTTATGCGCGGGTA TTCAGCCCCGGCCTGCACGTG-CTGTCG CAGAA CGAGATTCCCGAGCGGGTCGGGG-TGAA TATTCTCGGCACCCT  54 396
D3880_RS12630 NONE
D3880_RS12635 2768312 .. 2768333 +  -7.9  -2.78384   CAATCGGTATCCTCC           GATGGCGGC TGCA GCCGCTAGC            TCTCCTCACCCACGC  53 94
        dusA 2769555 .. 2769602 +  -6.2   -3.7948   CGACCTGTTGCAGGG ACGGTAG-GATGGGTTGAGACGC GCA GCGTCGATACCCATCGTTGCCGG TTTGATGGGTATTGC  60 19
D3880_RS12650 NONE
D3880_RS12655 2773423 .. 2773447 +  -9.9  -4.18494   GCCCGTCTTCCAGCC          CCGTTTCGGCG GGG CGACGGGACGG          TTTTGCCTGAGAATC  84 188
D3880_RS12660 NONE
D3880_RS12665 2778071 .. 2778099 + -16.8  -5.54192   CCTGATGCTCCCCTC       GCCCGCGGTTCAG ACTC CTGA-CCGCGGGC        TTTTTTTACCTTGCT 100 44
D3880_RS12680 NONE
         tal 2781797 .. 2781835 + -19.6  -3.57615   ACGCGGCCCTGAAAA   ACAAAGCGCGCGACACCT GCC GGGTGTCGCGCGCTGTGA   TTTAGCGGCTATTAG 100 45
D3880_RS12700 2784076 .. 2784105 + -20.9  -2.87211   CGTACAGTGCGGATA       TGACAAAGGCGGC CGAG GCCGCCTTTGTCA        TATCTGGAAGCAACT  95 44
D3880_RS12710 2785341 .. 2785358 + -10.5  -2.79133   CTGAGCCGGCACTCA             GGCGCTG CTAG CGGCGCC              TGTCATCCACGCTTC  61 37
D3880_RS12715 2786225 .. 2786237 +  -3.4  -2.60496   GTCGGCTTGCATTAC                CCTT GATAA AAGG                ATCTTTAGCCGCCCG  40 130
D3880_RS12720 2786580 .. 2786609 + -23.7  -4.03234   GCAGCGCGCCCTAAA       CGACAACCCCGGC TCAG GCCGGGGTTGTCG        TTTATATCAAGACGG 100 50
D3880_RS12730 2788144 .. 2788158 +  -2.7  -2.71364   CGCCTGACTCATAGC               GGCAG CGGGC CAGCC               TGGTTGGGAGCCTGA  39 124
D3880_RS12735 NONE
D3880_RS12745 2791514 .. 2791527 +  -2.3  -2.96274   CGAAGCGCGCTTCGT               CGCGG GTAT TCGTG                TGTGGTTCTGAGGCC  40 1
D3880_RS12750 2792326 .. 2792339 +  -8.1  -2.52834   AGGGCACTACAGGTT               GCAGC AGGC GCTGC                CTTGCTCATGGCCTC  52 57
D3880_RS12755 NONE
D3880_RS12760 2793472 .. 2793507 +  -5.3  -2.71059   TATGTGCTGGAGGCA    CGCGGCTGATGCGCCG CCTGT CGCTG-GCCAGCCGCG    TCGGTTTGCTGTTCG  46 17
D3880_RS12765 2794896 .. 2794953 + -10.1  -3.18264   GCTGAGTTCCGCGAA GCCCAAC-AGCGATGCCG--GGCCAGGCCA CAG TGGCATGGCTAACGGC--CGCTCGTTGGGC TTCGTCGCTGCGCGC  65 89
D3880_RS12785 2802222 .. 2802254 +    -4  -2.78523   TGTCGCCGGTCAGGT     ACTGCTTC-CCGCGC AACT GCGCGGAGACCCAGC      TGAATTTCTTCTGCA  41 440
D3880_RS12815 2808571 .. 2808602 + -13.7   -4.3467   GGGTCAAGAGGACAG      CGGGCGCCGGGCGT TTTAT ACTCCC-GCGCCCG      TTTTGCTATCAGGAT 100 44
D3880_RS12820 2809094 .. 2809132 + -17.6  -3.53012   TTCTGCCGGGAGGCA   GAAACAAAAACGCCGCTC AGT GAGCGGCGTTTTTGTGTA   TTTGGAGCGGGAAAC 100 84
D3880_RS12845 NONE
D3880_RS12850 2811398 .. 2811408 +  -6.8  -2.78384   CGCGATAGCGGCGAA                 TCCC CCG GGGA                 TATGCTCCCCCCAAA  50 167
D3880_RS12855 2812541 .. 2812557 + -13.7  -3.68222   CGATAACGCCGCTGG              CCGGCTC TGC GAGCCGG              TTGTTGGGCTTCGCA  88 121
D3880_RS12860 NONE
        dgcA NONE
        dgcB 2817501 .. 2817534 + -12.3  -2.52896   CTGTCACCCCCTCTC     CCTAGCCCTCTCCCC CAAG GGGGAGAGGGCATGC      TCAGTTCCGCCCTGG  68 117
D3880_RS12880 2818853 .. 2818865 +  -4.7  -2.75712   GCAAAAAGCGGCATC                CACCC TAC GGGAG                TCGTTCCATGGCTGA  43 95
D3880_RS12885 NONE
D3880_RS12890 2820202 .. 2820235 +  -8.8  -3.01924   GGTCAGGGCCGGGAC    GCTGGCGTGCCCGCGG GCAT CCACGG-CGCGCC-GC     TATTCGCCGCGAATG  60 303
        gbcA 2823708 .. 2823739 + -13.6  -5.42862   CAAGGACCACCCCTC      GCCCCTTCCAGGTC AACG GCCCTGGCGGGGGC       TTTTTTTGGCCATGT 100 158
D3880_RS12920 2828334 .. 2828345 +  -5.8  -3.80625   TGGGTTTCGTAACAC                TGCC AGAG GGCA                 TTTCCGTTCTCGACA  60 304
D3880_RS12925 NONE
D3880_RS12930 NONE
D3880_RS12935 NONE
D3880_RS12940 NONE
        betI 2833446 .. 2833466 + -18.3  -3.81414   AGCGCAAACAAAAAA            GCCCGGTCC ACT GGACCGGGC            TTCTTCATTCCAGCT 100 141
        betB 2836965 .. 2836999 + -14.5  -2.64155   CAGACCGAACCCGTA    G-GGTGGATTA-GCCGC GCA GCGGCGTAATCCACCGC    TCAGTTTCACGCCCG  76 50
        betA 2838813 .. 2838831 + -11.7  -5.98781   ACAGAGCAACCGCAA             CCAGGGC TCCGC GCCCTGG             TTTTTTTTGGTTCTA 100 54
D3880_RS13005 2853088 .. 2853140 + -13.4  -3.32647   TGGTTCATTGCAGCA GCGCTTCGATCTCGGCCGCCAGGTC TTCC GGCTTGGTGGCGGGGG-CGAAACGC TTGATCTGCTTGCCA  81 493
D3880_RS13025 NONE
D3880_RS13030 NONE
        htpX 2857110 .. 2857127 + -14.1  -5.10461   GATCGGCAACGACAA             GGGCGGC TCTG GCCGCCC              TTTTTATTGCGTGAA 100 43
D3880_RS13040 2858233 .. 2858251 + -13.1   -4.8622   ATGGCCAAACAAAAA             GCCCCGC ACTAG GCGGGGC             TTTTTCATTAGCGCG 100 253
D3880_RS13050 2861507 .. 2861523 +  -4.4  -3.79906   TCTCCGAAGACGCCT             CCT-CGG TGCG CCGCAGG              TTGTTGTCGACATCC  58 409
D3880_RS13065 NONE
D3880_RS13070 NONE
D3880_RS13075 2867422 .. 2867437 +  -3.2  -3.14564   AAGCGCGGCGTGAGG              GGCGAT GGGT ATCGCG               TTGCTCAACCCATCC  45 98
D3880_RS13080 2869071 .. 2869113 +  -6.3  -3.30124   TAGGGTGGAAAACCG CGCAGCGTTT-TCCACCG CGGCCAAA CGGTGGACAAGCGAAGCG TTGTCCACCCTACGC  52 178
D3880_RS13105 2873497 .. 2873507 +  -4.6  -3.75863   CTCGCCCTGCAGGGT                 CGCC TGG GGTG                 TTTGGTAAGGGTTTT  55 501
D3880_RS13115 2874218 .. 2874228 +  -2.4  -3.33696   TCGCACGTAACTTCC                 GCGC CAC GCAC                 TTAGTTAGCGCGCAA  44 110
D3880_RS13120 2874745 .. 2874761 + -15.1  -5.26316   GGCAGAAACGAAAAA              GCCCGGC AAT GCCGGGC              TTTTTTGTCGCATCG 100 64
D3880_RS13140 2877710 .. 2877727 + -14.1  -5.10461   CGCAGAGCTTCCCGA             GCCCGGC TTTT GCCGGGC              TTTTTATTGCGTGCA 100 49
D3880_RS13145 NONE
D3880_RS22880 2879256 .. 2879271 +    -6  -3.33696   TCGCGCGCGATGAGC              GGCGCC CTCC GGCGGC               TTACTTCAGCGCGCC  52 473
D3880_RS13165 2881271 .. 2881287 +  -9.4  -4.41177   GCCGCACAGAAAAAA              GCCCGA GCGAA TCGGGC              TTTTGCATTTCTGTC  82 48
D3880_RS13175 2882916 .. 2882933 + -14.1  -3.73647   CATAGCCAAAAAAAA             CCGGCCC ATGA GGGCCGG              TTCTTCATGGCTCCG  91 227
D3880_RS13190 2888259 .. 2888276 +  -4.9  -3.16785   CGCAACCTTGGCGGG             CAGATCGC TCA GC-ATCTG             TGTCTTGCTCTGCTG  47 123
D3880_RS13220 2894150 .. 2894166 +  -6.5  -4.14627   GCATTGTTGCCTAGA              TGTCCCG CAA TGGGACG              TTGTTTCTCTCACAC  71 225
D3880_RS13225 2894541 .. 2894562 + -11.5   -4.2558   TGCTCAGGCAAAAAA           GAAGGGGCC TTGC GGCCCCTGC            TTTTACTCACGCGTC  89 68
D3880_RS13240 NONE
D3880_RS13245 NONE
D3880_RS13250 2899787 .. 2899835 + -19.6  -2.74523   GCAACCAACTGCTCT GCCTCAAGC-CTCGGGCTCGGGC TCGG GCTCGGGCTCGGGCGCCTGAGGC TGCTCTTGGCCCTGC  88 110
D3880_RS13270 NONE
D3880_RS13275 2906091 .. 2906131 +  -5.4  -3.50572   CAGCTCGAGGGCGCC TTGCTGCTGTAAGGACGAC TGTT GTCGGCCGCACAG-AGCAG  TTCTGTAGGATGGGT  55 14
D3880_RS13315 NONE
D3880_RS13320 2915435 .. 2915472 +  -2.5  -2.70932   CGGTCAGATGGTCGG   CGGCCTCGGCCAGCATGC GCC GCAC-CAGGTCCAGACCG   TCGTTACCGCAAGCC  38 306
D3880_RS13330 2916913 .. 2916936 +  -3.9  -4.07568   GCACTGATTTGAGCC         GCGC--TGGCT GCAG AGCCATAGCGC          TTTTCCACCGGGAAG  59 29
D3880_RS13335 NONE
D3880_RS13340 2918197 .. 2918213 +  -6.5  -2.57132   GAAATCGCTCAGAAC              GGCCG AAAAACC CGGCC              ATTCTGGCGGCGCCC  49 264
        folE 2918849 .. 2918892 + -21.3  -2.71364   TTCGCTAACGCGGCG CTGCAACGAAAAAACCGGC CTCTGA GCCGGTTTTTTCGTTTCAG TGGTTGCGCCCGTCG 100 33
D3880_RS13365 2921776 .. 2921793 +  -3.3  -2.71364   CGACGCGGAAGATTG             AGGCGGA ACAC TTCGCCA              TCCTTAGCAAGATCC  41 25
D3880_RS13370 NONE
D3880_RS13375 2923832 .. 2923847 + -11.8  -3.78775   AGCAAAAACAATAAA              GGCGCC TCTC GGCGCC               TTTGCTGCTCAAGCC  80 138
D3880_RS13390 2926905 .. 2926943 + -16.8   -3.9009   GACCGACACGGATGC   CCGCTTCGTAGCCCGGAT GAA ATCCGGGCTACGAACTGC   TTTGTAGGATGGGTT 100 48
D3880_RS13485 NONE
D3880_RS13490 NONE
D3880_RS13495 2967617 .. 2967649 +  -2.4  -3.14931   CCATCGACACAAGGA      ACGCCGGCAGCGGC TGATC GTAGCCGCCAGCGA      TTCATGGAGAATGAC  43 341
D3880_RS13500 2968038 .. 2968051 +  -2.3  -3.07443   TGGGAAATTGCACTG               ATCGG CACA CCGAA                TTGCATCGGATCTGA  41 230
D3880_RS13505 2968898 .. 2968930 +  -2.6  -3.93782   ACCCTACCGGGATTG     TGCCGTAGGGTGGGC TTCA GCCCACCA-ACAGGA      TTTGCTGTTCACTAC  54 66
D3880_RS13515 2971778 .. 2971819 + -10.7  -2.78384   CGCGTGGGCATGCAG CCAGAGACGCTCCGCGTCT CAAG GGACGCAGAGCGTCCCGGA  TCTGCTCCCACGCAG  61 70
D3880_RS13520 NONE
        atuC NONE
        atuD NONE
D3880_RS13535 NONE
        atuF NONE
D3880_RS13545 2979922 .. 2979935 +  -3.7  -2.65532   GCACCGGGGTCATAG               GCGCG AAAA CGGGC                TAGCTTTAAAGTCAT  40 152
D3880_RS13550 2982233 .. 2982245 +  -9.1  -2.57344   GATAGACCCGGGCGG                GCTGG CGG CCAGC                ATTCTCGAAGGCATC  54 442
D3880_RS13595 2991188 .. 2991221 +  -8.1  -2.55551   CGAACACCTCGTCCA     GCAAGGCCCGCA-TCG CCG CGAATGCGCGCTTGGC     TACCTTCGGGTTGTA  52 176
D3880_RS13625 2996991 .. 2997019 + -15.4  -3.44229   ATTGCCTCCTGAAAG       C-ACAAGGCCCGC ATTT GCGGGCCTTGTCG        TTATGGTGATGGGCT  93 46
        gltA 3012872 .. 3012890 + -11.7  -5.42514   GTCGGACACAAAAAA             GGCTGCC TATTT GGCAGCC             TTTTTTCGTTTCTGG 100 58
D3880_RS13710 3016807 .. 3016825 +  -7.3  -3.62775   CCGTCACCGGCAATT             GCGCGCC ATTGC GCCGCGC             TTCTTCGAGGATGAT  61 194
D3880_RS13720 NONE
D3880_RS13725 3018725 .. 3018740 + -11.8   -5.7946   CCAGGCCTAAAAAAA              CCGGCC TGAT GGCCGG               TTTTTTTATTGCCGC 100 46
        rhtA 3020154 .. 3020168 + -11.4  -3.28712   GAGCGCCCGGGCAAT               CGCCAG ACG CTGGCG               TTGTCCGCCGGACAA  68 512
D3880_RS22780 3024295 .. 3024305 +  -2.4  -2.62184   GGAAGTCGGCATCGT                 CGCG GCG CGGG                 TCGTATACCGCGCGG  38 244
D3880_RS13760 3026962 .. 3026991 +  -5.6  -2.62184   ACTCCCAACGCCGAA       GCCAGGCCCTAC CGCGCC GTTGGGCTTCGC        TGCTCTCAGCGCCAA  46 141
D3880_RS13795 3033371 .. 3033393 + -10.5  -3.40403   GGGCCAGTGAACGAT           GCACCCCTC TCTTC GAGGGGCGC           TTCTCATCAGCGCCC  68 31
D3880_RS13805 3035224 .. 3035236 +  -6.2  -3.24329   ATGCCGCGCCAGTTG                CGCC AGCAC GGCG                TATTCCTTGCGGGTC  53 276
D3880_RS13890 3054651 .. 3054661 +  -5.4  -2.71483   CCGGGCCCTGCCATG                 CTGT ACA ACAG                 TGGTTGGCGCACTGT  46 101
        fabA NONE
        fabB 3056561 .. 3056577 + -15.1  -4.98531   TCCTGAAAACAAAAA              GGGCGCC CGA GGCGCCC              TTTTTCGTTTCCCGG 100 46
D3880_RS13945 3068308 .. 3068324 + -13.7  -4.46073   CCGGCCCACAAAAAA              CCCGCTC GAT GAGCGGG              TTTCTTGTCTTACGC 100 41
D3880_RS13960 3072046 .. 3072075 + -16.7  -3.65351   ACATGTAAGCAAGAA       TAAAAAAGGCTCC CGAG GGAGCCTTTTTTA        TTTCAGTCGGGCTGC 100 50
D3880_RS13985 3076436 .. 3076461 +  -8.3  -5.93809   TCCTAATGGTCTTGA         CCCGGATTC ATCCCCCA GAGTCCGGG          TTTTTTTTATCCGCG 100 202
D3880_RS14055 3087272 .. 3087290 +  -4.4  -5.41143   CGCAGCGCCACCTGC             TCGGCGAC ACT GGCGCCAA             TTTTTTTCGCGAATC  95 129
         rne 3093380 .. 3093397 + -11.3   -5.4505   AATCCGCACAAAAAA             GGGATGC TCAG GCATCCC              TTTTTTGTTGGCCGG 100 47
D3880_RS14120 3100990 .. 3101007 + -12.7  -4.72986   GCACCCCATGAAAAA             CGCCGCT CGTA AGCGGCG              TTTTTCATGGGCGTG 100 30
D3880_RS14140 3104891 .. 3104904 +  -3.1  -2.80779   CTGCTGAGGGAGACC               GGC-CA TGT TGCGCC               TGCTGTTGATCTTCG  41 53
D3880_RS14145 NONE
D3880_RS14150 3106015 .. 3106040 +  -2.6  -2.72661   CATCGAACGCCGCCA        CCCGA-TA-GGC TTCG GCCATGGTCGGG         TAGTTGAAGGTGGTA  38 103
         mfd NONE
D3880_RS14175 NONE
D3880_RS14180 3116929 .. 3116945 +  -8.7  -3.63805   ACGTTGAGCAGCTCG              CAGGCTC TTA GAGTCTG              TTTACGATCTCGCGT  68 34
        lexA 3120965 .. 3120979 +  -3.4  -3.92522   GTGTCGGCGTAATCC               GCCGCT AGA GGAGGC               TTTATGCAGTTCCCG  56 18
D3880_RS14210 3121957 .. 3121969 +  -4.7  -3.72027   CCTCAAGCTCCTGGC                GCGCC AGT GGCAC                TTCTTCATCCAGGCT  55 523
D3880_RS14245 3130190 .. 3130209 + -12.8  -4.88918   CTGGCCATGTTTGAA            GCCCGGTG CTTG CGCCGGGC             TTTTCTTTGCCCTCA 100 68
D3880_RS14255 3131191 .. 3131216 + -20.5  -3.14344   GGAGTAACAATCCGC         GGCGAACCGCG CCAG CGCGGTTCGCC          TTACTCCAGCGAATC  95 34
D3880_RS14270 3136044 .. 3136054 +  -8.2  -3.18582   CGTGGAATCACCCTC                 GCCC GTT GGGC                 TTCGTCGCTGCGCTC  57 123
D3880_RS14305 3145040 .. 3145054 +  -5.7  -2.60723   GAAAGCCGCAAGGCA               TCGCT GTAGG AGCGA               ATTCATTCGCGCTGC  46 17
        mobA NONE
D3880_RS14325 3148120 .. 3148134 +  -2.8  -4.77216   AAATCTACATAACCT               CTTGTG CTG CAAAAG               TTTTTCAGTATTATT  72 308
D3880_RS14330 3148249 .. 3148265 + -10.8   -5.4833   CCAAACCCGAAAAAA              CCCGCC TTCAT GGCGGG              TTTTTTATTGCCTGG 100 38
D3880_RS14340 3150706 .. 3150751 +  -5.4  -3.14344   AGCTGCGAGGCGCGC CTGCTCGGCG-GGC-TG-GACTG AGT CAGACGCCCGCCGCGGCGAGCAG TTGCTCCGCCGCCTC  50 5
D3880_RS14350 NONE
D3880_RS14355 NONE
D3880_RS14360 3153858 .. 3153868 +  -4.6   -3.0641   GACTAAGGTCTAAAA                 GCCG TCG TGGC                 TGTCTCGTGTTTTAT  46 61
D3880_RS14365 3155456 .. 3155473 + -14.1  -4.72272   CAGAGCCATGAAAAA             GCCCGCC GATT GGCGGGC              TTTTTCATGCAGCGC 100 262
D3880_RS14375 NONE
D3880_RS14380 NONE
D3880_RS14385 3158672 .. 3158719 +  -3.3  -3.18582   GGTCGGGGTGATCGC CTGCAGCAGCGGGCCGACCGCGGC GAT GCCGCC--CAGCCC-CTGCGCCAG TTCGTCGATCCCGTG  44 480
D3880_RS14400 NONE
D3880_RS14405 3162617 .. 3162665 +  -4.4  -3.66921   CGGCCATGGCTTCAC GCAGGAACTGGGCGAGGAAGGCG TCGA CGGCTTCATCGCTCAGA-CCGTC TTTCAAGTTCACGTT  55 445
        dacB 3164485 .. 3164516 + -23.2  -4.08767   GCTGAAACCGTGTAA      TGAAAACGCCGCCC CATG GGGCGGCGTTTTCA       TTTTCGGACCGTAGG 100 36
D3880_RS14425 3167733 .. 3167750 + -12.7  -5.10461   GCGGGCGAGAGCCCA             GGGCTCC TTCG GGAGCCC              TTTTTATTGCCTGCG 100 88
D3880_RS14440 3170143 .. 3170178 + -23.4  -2.52676   TGACAGCTGATCCAC    ACAGCAGAACGGCGCC CGTA GGCGCCGTTCTGCTGG     TGCGTTGAGCCCCTG 100 31
D3880_RS14450 3176310 .. 3176320 +  -8.2  -3.06696   GATTAGAGTAATGGC                 CCCC GAT GGGG                 TGTGTTCGGCGACCC  56 93
D3880_RS14455 NONE
D3880_RS14460 NONE
D3880_RS14465 NONE
D3880_RS14470 NONE
D3880_RS14475 NONE
D3880_RS14480 3183625 .. 3183641 + -15.1   -5.1101   TGAAGCATAAAAAAA              CCGCGGC CTG GCCGCGG              TTTTTTACGTGCTGA 100 350
D3880_RS14535 NONE
D3880_RS14560 NONE
D3880_RS14565 3207157 .. 3207182 + -13.3  -3.89346   TACGGCAAAGAAAAA         GCCCCCAGGTA TCGC TACCTGAGGGC          TTTCTAAGATGGCGC  91 210
D3880_RS14630 NONE
        gspD 3218108 .. 3218127 + -12.1  -4.87665   CACGCCCAACAAAAA            GCCCCGG CAGATA CCGGGGC             TTTTTGTCACTGCGG 100 105
D3880_RS14730 3243161 .. 3243209 +  -3.3  -4.79756   ATACGGCGTTAAAAC CGGCCTCAAAATGCTCA-TTTAC CGCAC GTAAACTGCGCTTTTTC-GGCCG TTTTTGCCTTGTCTC  74 71
D3880_RS14740 3247075 .. 3247093 +  -5.2  -3.39895   TCTCGACGTTGTAGG             GTGGGTAG GAA CTACCGGC             TTCGTTACTGCGCAG  53 412
D3880_RS14805 3256600 .. 3256624 +  -8.5  -3.15861   CCGCGACTGGATCGC          GGTGATGAGCA TGA TGCTCGGCGCC          TTCATGGCGATCCTC  57 74
D3880_RS14810 3258098 .. 3258118 +   -14  -4.05788   GCTGCTCACTAATCA            CCTGCCGG CCCGC CCGGCAGG            TTTCGTTTCAGGCCC  95 29
D3880_RS14815 3259321 .. 3259337 +  -6.6  -3.64283   CATGGGCGCCTTCGA              GGATGT CCTGC ACATCC              TTCTTCACCCCTTTC  59 310
D3880_RS14825 3262495 .. 3262521 +  -9.5  -2.53164   TGTAAAGGCGACAAA        GGGAAGTC-GGC AAAA GCTTGACTTCCC         CTTCCTAATCAGTAG  56 36
D3880_RS14830 3262637 .. 3262655 +   -16  -4.73108   GAGCCAAATAATAAG             CCCCAGCC ATT GGCTGGGG             TTTTGCTTTTCTAGC 100 35
D3880_RS14885 NONE
        ubiG NONE
        mupP NONE
D3880_RS14900 NONE
D3880_RS14905 3280949 .. 3280965 + -12.3   -5.5604   GAAGCCAATAAAAAA              GGGACTC GAC GAGTCCC              TTTTTTATTCATTGC 100 55
D3880_RS14925 3284590 .. 3284633 +    -8  -2.62263   CCCGGCCTTATCAGT CAGGC-GACTCCAGGCGCGGT GTT GCTGCGCCTGGAGCCTGATCG TGCTCTACACCAGCT  52 41
D3880_RS14940 NONE
D3880_RS14945 NONE
D3880_RS14950 NONE
D3880_RS14955 NONE
D3880_RS14960 3289063 .. 3289088 + -19.1  -4.66833   CCGCGCCAACCACCC         GCCCATCGGTC CCCG GACCGATGGGC          TTTTTGCCGTTAAGG 100 44
D3880_RS14965 3290916 .. 3290933 +  -6.9  -3.78934   GCCTTGGCCAGAGCC             TCCGGAG TGGC CGCCGGA              TTCTTCTGCAGCAGC  64 493
D3880_RS14975 3292842 .. 3292858 +  -2.1  -3.72576   CCCGTCCGTTCTGGC              GGCATTG AGG CGGCGCC              TTTGGTGACCGCCAG  52 18
D3880_RS14980 3294543 .. 3294553 +  -3.2  -2.80464   AAGGGCGAGTGCAAC                 GAGT CAT GCTC                 ATTTACAATTCGTAA  41 191
D3880_RS14990 3296127 .. 3296143 + -15.1  -5.06414   CAGCGCGATGACTCG              GGCCGGC ATT GCCGGCC              TTTTTGTTCCGGCGC 100 48
D3880_RS14995 3296861 .. 3296899 + -14.5  -2.86271   CGCAGGCGCTGCACT   CCCTCCGTGCGGCAGCC TACTT GGCTGCCACACGGATGC   TGGTTATGATCCCCA  79 41
D3880_RS15000 3298864 .. 3298888 +  -8.5  -2.62263   CGCCCGACCACGCTG          TCCAGGCCCTG CGG CAAGGCATGGA          TGGTGTCCGCCAGCT  52 504
D3880_RS15030 3304149 .. 3304160 +  -3.6  -5.40072   CAGCACCAACGCGCG                CTGG TAGC CCGG                 TTTTTTTAAACCGAC  85 19
D3880_RS15035 NONE
D3880_RS15040 NONE
D3880_RS15050 3307755 .. 3307770 + -11.8  -5.99154   TGCCCCCATAAAAAA              CCGCGC CTGA GCGCGG               TTTTTTTGTTTCATC 100 52
        mnmC 3312717 .. 3312729 + -10.5  -2.71011   GACGCGCCCAGCCCG                CCGGC GCC GCCGG                TGCTTGGCGAACGAT  61 39
D3880_RS15070 NONE
D3880_RS15075 NONE
D3880_RS15080 NONE
D3880_RS15085 NONE
D3880_RS15090 3316152 .. 3316164 +  -9.1  -3.15861   GCTCACCCTACGGGC                CAGCC TTC GGCTG                TTACTCCCGCTGGTC  61 341
D3880_RS15095 3319181 .. 3319193 +  -3.3  -4.56775   CGAGTTGTAAATGAG                CAGTC CGA GCCTG                TTTTTAACGCAGCAT  68 136
D3880_RS15100 3319534 .. 3319564 + -10.5  -3.18264   GCTGAGCGCAGCGAA      GCCCAACAGCGGGCG GCA CGC-TGC-GTTGGGC      TTCGTCGCTGCGCGC  65 54
D3880_RS15145 3327582 .. 3327597 +  -3.2  -2.76261   CAGCAGTCGACGAAT              CCGC TAAGATGC GCGG               CTTTGCCACTTCAGC  41 50
D3880_RS15150 3329347 .. 3329395 +   -14  -3.09834   CCGTGTAGGAGCGAA TTTATTCGCGATAGGGGGCAGC GCGGA GCTGCTCTTGTTCGCGAATAAA TTCGCTCCTACGGTC  76 195
D3880_RS15160 NONE
D3880_RS15165 NONE
D3880_RS15170 3345120 .. 3345178 + -13.2  -3.16039   GCAGCGCCGAGCCCC ATAGCCCGGATGCAATCCGGGAAGCGG AGTTGC CTGCATC-CAGATTGCACCCGGGCTAC TTGCTAACAGTCGTT  78 184
D3880_RS15180 3347007 .. 3347041 + -15.8  -3.12749   ATGCCAATTGGCCAA     ATCCGGAATGCCCATT CAG AACGGGCATTCCGGAG     TATTAAACTTATTAG  85 124
D3880_RS15190 3348513 .. 3348530 +  -9.8  -3.66803   CACGATGGACAAAAC             CCGCGC CTCGGA GCGCGG              TTTGAGCTCTTGCAG  70 362
D3880_RS15205 3351033 .. 3351067 +  -9.9  -2.78816   ATTCTTGAACTGTAG    CGGATCGCCCAGCTCC GCCA GGAGCAAGGCGG-CCG     TCTGCTCGCCGATGC  57 399
        speB NONE
D3880_RS15235 NONE
D3880_RS15240 3359630 .. 3359640 +  -6.8  -4.07568   GGGCTTTAGTCTTAC                 CGTC ATT GACG                 TTTTGAGCGGCAGCG  68 275
D3880_RS15245 NONE
D3880_RS15250 3362493 .. 3362523 + -16.1  -3.22475   CGACCAGTGGGCCGC       CCGCGCCGCCGGT TCGCC ACCGGCGGTGCAG       TGTTCTGCGCCTGCA  85 132
D3880_RS15255 NONE
D3880_RS15260 3365791 .. 3365804 +  -3.8  -2.73364   TCTCGGATCTGCTGC               GCGT CGGCCA ACGC                TGGTTCCAATCCACC  41 47
D3880_RS15265 3366897 .. 3366907 +  -8.2  -2.93073   TCCGGGAAAGATGGT                 CGGG TGG CCCG                 TGCTTCTTGGACCAC  55 198
D3880_RS15275 3368852 .. 3368867 + -10.4  -3.53012   AACGGCGCCGCCAGC              GCGTGG GCAT CCACGC               TTTCGCGGCCCGGCA  67 128
D3880_RS15285 3371230 .. 3371241 +  -5.8  -2.81815   ACTGGAGTGCATCAC                GGCA TAAT TGCC                 TGCTTCGTCCTTGGC  46 340
D3880_RS15295 NONE
D3880_RS15300 3373480 .. 3373495 +  -5.4  -2.96274   CCCGCCGTTAATGGG              GGAATC GCCA GGTTCC               TGTCCTTCTGCAGCG  48 70
D3880_RS15310 NONE
D3880_RS15315 NONE
D3880_RS15320 3376886 .. 3376904 +   -16  -3.63744   TGGAGGTTGGCCCTC             GGCGCCTG AGT CAGGCGCC             TCTTTTACCGCCCAG  93 190
D3880_RS15325 3378097 .. 3378110 +  -8.1  -3.53012   AACTGCTCGCACAAT               CGCGA TTCT TCGCG                TTTGGCCAGGCGCAC  60 252
D3880_RS22790 3382009 .. 3382041 +  -5.4  -3.90112   CGAGCGCCTCGGCGA      TGCGGTAGATGGGC AGGTC GCCCTGCTGCAGCA      TTTCCTTGGCACGGG  63 167
D3880_RS15365 3387561 .. 3387601 + -11.7  -2.59191   CCTGGCCGCTGCCCT  GAATAGCCAAGCTCCTCGC ACT GCGAGGGGCTCGGCGAAGC  CTTGTCCGAATCTGC  64 62
D3880_RS15370 NONE
D3880_RS15375 3390179 .. 3390193 +    -7  -3.08133   CTGCGGCGCCGGCCA               CCCGCG GTG CGCGGA               TTGAATGGCTCGCTC  52 108
D3880_RS15380 3391186 .. 3391212 +  -8.6  -3.73224   GCGCCGTTCCTAAGC         CGCAGGCGCT GGACTGA GGCGCCGGCG         TTTCCTCGGCACTCC  67 28
D3880_RS15385 NONE
D3880_RS15390 3394053 .. 3394074 + -12.3  -2.52896   CGCTAATCCGCCCTG           CCGGG-TGGC TGC GCCAACCCGG           TAAGTTGACAGGTAC  68 35
D3880_RS15395 3395518 .. 3395533 +  -8.2  -4.05747   GGCATGCATAAAAAA              CCGGCT CAAT GGCCGG               TTTCTCTCAACTGTC  71 148
D3880_RS15410 3398556 .. 3398577 +  -4.3  -2.66435   TCATGAGCCGCCGCG           CCAGCCGTT GAGA ATCGGCTGA            TGGTCTGCTGCGCGT  43 15
D3880_RS15415 NONE
D3880_RS15420 3400406 .. 3400421 + -11.8  -4.35524   TGACCAAATGAAGAA              GGGCCC GCAA GGGCCC               TTTTCCATTTACGAG  93 30
D3880_RS15430 3402481 .. 3402501 + -13.9  -2.52896   CGCAACCGCCCCCAA            GACGGGCCC CTT GGGCCCGCC            TGCATTGCCGGCTGA  72 126
D3880_RS15435 NONE
D3880_RS15440 3404175 .. 3404196 +  -2.1  -3.41602   GCGACTGTCCCTGCT           GGCAACCGG CATG CTGCTGGCC            TTCTCGTCCCATGCG  44 177
D3880_RS15445 3406600 .. 3406617 + -14.1  -5.31519   GCGCAGCCATGCCAA             CGGGCCC CGCG GGGCCCG              TTTTTATTTCGCTGT 100 44
D3880_RS15470 3411415 .. 3411448 + -13.9  -3.61398   CTGATCCCTGGACGG     CGGCGGCA-CCGCC GCCGGCG GGCGGATGTCGCCG     TTGTTGAGCAGCGGC  78 321
D3880_RS15480 NONE
D3880_RS15485 NONE
D3880_RS15490 3413301 .. 3413345 +  -5.8  -3.33492   AACCTTTCTTGCCCA TATGACG--ACGTAGCCCGGAT GCA ATCCGGGCTACGAAATGTCACG TTGTAGGATGGGTCG  52 58
D3880_RS15535 3423088 .. 3423104 +  -2.2  -4.22927   TCTACACCTTCATCG             GTGC-CG TCGG CGCGCGC              TTTATGTGTTGGTGG  60 276
D3880_RS15545 NONE
D3880_RS15550 3425112 .. 3425151 +  -4.1  -3.87994   GGAAATATCCCACTA  GACTTCAACGTGAGCGG CTAACC CCGCTTCCGGTGGGGCC   TTTCTGAGAATGACT  56 288
D3880_RS15555 3425826 .. 3425843 +  -2.7   -3.5394   AGGTCGCTAGCAAGC             CTGG-AGG ATT CCTGCTAG             TTTCCGCCCCGCTTT  47 150
D3880_RS15560 3427137 .. 3427150 +  -8.1  -3.86346   CGCGCAGCTGACTTA               CCGCT TCTA AGCGG                TTTGTGCGGCCCTCC  69 16
D3880_RS15675 3448305 .. 3448321 +  -3.6  -2.52896   CAGCCCATGCCTATA              CTCGAC ATACG GTCGCG              TAGGTTCGGCCCTGC  40 89
D3880_RS15680 3449026 .. 3449055 + -22.3  -4.62336   ACCTGCTGCTGTGCT       CGACGAAACCGCC ACCT GGCGGTTTCGTCG        TTTTTGGGCTGCCGT 100 42
D3880_RS15685 3449873 .. 3449883 +  -3.2  -2.57211   GAGAACTTGATTGGA                 CAGG CGA TCTG                 CTTCTGCGCCGGCAT  39 304
D3880_RS15715 3457810 .. 3457837 +  -8.5  -4.07568   TGCCCTCTCCCCCAG       C-CCCC-CTCCCA CGAG TGGGAGAGGGGAG        TTTTCCGAGAGCCGA  71 158
D3880_RS15725 3459247 .. 3459262 +  -4.6  -4.19371   TGACAAAATGTTGCA              GCGCCA TCCG TTGCGC               TTTGTTAAGGGTTTG  65 238
D3880_RS15730 3460162 .. 3460184 +  -7.6  -3.01712   GAGCCACTTGTAGGA           TGGGTTGCGC AAC GCGATACCCA           TCTTCCCCGGCGCAC  56 141
D3880_RS15745 3466263 .. 3466287 +  -3.5  -3.61398   GCCAGTGATGTAGGT         CGCG-GCTCC CAGAGC GGACCGCGCG          TTGTTGCCCGGCAGG  51 33
D3880_RS15750 3467955 .. 3467979 +  -7.1  -3.83042   GAAACCGTTTCGGGC          CGCAACCGAAG GGA CTTCAGTTACG          TTGCTTTTTGGGTAA  63 160
D3880_RS15755 3468476 .. 3468494 + -12.4  -5.08824   TCAGAAAAATAAAAA             GCGGGGCT AAT AGCCCTGC             TTTTTTCCGTCAGCA 100 84
D3880_RS15760 3469442 .. 3469460 +  -4.4  -3.28791   ACCCCCACGCCAAAC             GCCAGATG GGT CACCAGGC             TTCTCAGCCGGACCT  49 150
D3880_RS15770 3470409 .. 3470424 +  -4.6  -3.13403   CGCCGGCTAGCGCGC              CCGCAG AACT CTTCGG               TGTTGCTCCGCAGGC  48 60
D3880_RS15775 3471370 .. 3471394 + -12.7  -3.43151   CCATGTCCAACTACC          GCCGCGCCCGG GTG CCGGGAGCGAC          TTCATTCATCGTTCC  79 174
D3880_RS15780 3472105 .. 3472139 +  -2.7  -2.79501   GCCGAGCGTCCAGAA     CGCCGACTGCCATTA ACGTC TGGTAGCAAGCGGCG     TATCGTAGGAATCTC  39 124
D3880_RS15785 3472746 .. 3472777 + -10.1  -3.30771   GCCAGCCGTCCACCA      CCTTGC-GCGGGGC GTCCA GCCCGGCGGCGAGG      TTCTCGCCGATCTGC  63 230
D3880_RS15795 3474035 .. 3474057 +    -4  -4.09685   GGAGTCGGGAGATAT           CCCCGGCG GAAAACG CGTCGCGG           TTTTCCACCCTGCGC  59 53
D3880_RS15805 3475148 .. 3475166 +  -6.7  -2.53876   ATCCCGAATCGCTCG             GCTAGCT AAATC GGCTAGC             TAAATTCGCATGGCC  48 116
D3880_RS15820 3478632 .. 3478642 +  -5.4  -3.41878   ACTAAAATCGGCGCC                 CTAC TCC GTAG                 TTCTGGATTCCCGCC  55 111
D3880_RS15825 3479482 .. 3479529 + -16.3  -3.57263   TGGGGGTACCCGCGA CAGCCGCTGAGTCATGATCGT TTCCGC ACGCTCAAGGCGCAGCGGCTG TTTCGCAATCGGCGT  93 71
D3880_RS15830 3480266 .. 3480294 +  -6.6  -3.16055   GGAAGAAAGCCCTTG       GAG-GCGAGCCCG GCCC CGAGCTCGCGCGC        TTGCTCCGCCATTTG  51 354
D3880_RS15840 3482188 .. 3482214 +  -7.3  -3.37761   CTCTTTGCACTCAGT        CGCGG-CTTGGG CTTT TCCAAGACTGCG         TTCACTTTGTTCAAG  56 359
D3880_RS15845 3482472 .. 3482486 +  -8.5  -5.80364   GTCATACCGAGAAAA               CCGGC CTCGT GCCGG               TTTTTTTATTCGGGT 100 48
D3880_RS15850 3483173 .. 3483186 +  -5.9  -3.63515   GACCCTGCTTGTACA               GGCCG CCGA TGGCC                TTCTTGAAGCTGCCC  59 476
D3880_RS15865 NONE
D3880_RS15870 3486969 .. 3486982 +  -8.1  -3.30124   AGAAGTAATAGCTCT               GCACG ATGC CGTGC                TTCTCCACCATCCAC  56 305
D3880_RS15890 3490341 .. 3490359 +  -3.7  -4.08394   ATCGTAGAAGGCCAT             GCCGCTG ATCGC CGGCGAC             TTTTCCCAGACGTAT  61 276
        egtB NONE
        egtD 3494162 .. 3494186 +  -6.3   -3.6715   GACTGACCAGCGCCG          GCTGGTCGCTC TTC GGGCGAGCAGG          TTTGCGCTTGGCTGG  59 474
D3880_RS15915 NONE
D3880_RS15920 NONE
D3880_RS15945 NONE
D3880_RS15950 NONE
D3880_RS15955 3502125 .. 3502154 + -12.1  -3.56092   GACACCCTCTCCCCC       GGCCCCTCTCCCA CAAG TGGGAGAGGGGAG        TTTCCGAGATCGTAA  79 177
D3880_RS15960 NONE
D3880_RS15965 3504709 .. 3504728 +  -2.8  -3.41051   AGCGCGTCAGCACCG            GCTCGAACC CAC GGATC-AGC            TTGTGCTCACCCTGG  48 166
D3880_RS15985 3510266 .. 3510297 + -10.9  -2.71364   CCGGTTCATCACGCG     GCG-GCAGGCGGCTG CTGA TAGCCGCC-GCGCGC      TCGTTGGCCCAGTGC  60 61
D3880_RS16000 NONE
D3880_RS16005 3515882 .. 3515909 +  -3.2  -3.40597   CGAACCGGAAGCCGA        CCATGCCGCGTG AAAT CGCCCTGCACGG         TGTTTACCTGCCCAC  47 13
D3880_RS16010 NONE
D3880_RS16015 3517192 .. 3517236 + -12.2  -4.36914   GAGCGACCTCCCTTC TGGCCTTCCCTTGG-AGCGTG CGCG CTCGTTGTCGAGGGAAGGCCG TTTTATCGCAGCCGG 100 230
        sstT 3518817 .. 3518828 +  -3.6  -3.53012   CAGGCTAACGATGCA                GGCG TATT TGCC                 TTTGCCGACCCGCCA  51 217
D3880_RS16030 3520040 .. 3520052 +  -3.3  -3.04398   GTCGAACCGCAACCC                CTCGC CCC GCGAC                CTTTTCCCCGCCCCC  43 75
D3880_RS16035 3520755 .. 3520769 +  -4.2  -2.71712   AATGAGCATTCCGAA               GCCGTT TTT AACGCC               GTTTGGCCGACGCGC  43 116
D3880_RS16040 3521754 .. 3521772 +    -3   -3.1706   CGCCACGGACAACTC             TCTCTCCC TTC GGAAGAGC             TTCGTAGGATGGGTT  43 197
D3880_RS16045 3523483 .. 3523509 +  -5.6  -3.57792   CCTCGATTTCGGCCT         CGGCCGCCTGCG TGC CGCGGGCGAGGG         TTTCGCCGTCGCTGC  54 371
D3880_RS16070 NONE
D3880_RS16075 3529001 .. 3529031 +  -4.6  -3.53012   TAGTCCAGATCTGCA      GGGCGA-GCACGC TACGCC GCGGCCCTCGCCC       TTTGACCGCCCGCCC  52 38
D3880_RS16080 NONE
D3880_RS16085 3530451 .. 3530462 +  -3.6  -3.53224   AACCTTCAGGGTGAG                GTCG GCTG CGGC                 TTTACCAGCGGCGTC  49 106
D3880_RS16105 3532968 .. 3533009 + -15.9  -3.06302   GGTGGACTCGCGCAG CAGTACGCCGACGGAGTCTG GAT CAGGCTCAG-CGGCGAACTG TTCGCTGGCGCTCCT  83 50
D3880_RS16115 3534419 .. 3534468 +  -4.3   -3.9941   GGTGGAAAACGCTGC GCGGTTTTCCACCCTACGAGGG TCTGAAT TTCACGTAGTGTGGACAAC-GC TTTGCTTGTCCACCG  59 80
D3880_RS16125 3536427 .. 3536437 +  -2.4  -4.34771   GAGACCCGGATGGAG                 GGGC ACA GACC                 TTTTGGTCCCTTTTG  63 259
D3880_RS16150 3546661 .. 3546703 +  -2.5  -4.12188   TGTGCGTTTGCCCAC CTCTCT-CTGCCCCGGCCGC TCTT GCGCCAGTGGCAGCGGGGAA TTTTCGAGATCGTGA  57 96
D3880_RS16155 3547774 .. 3547785 +  -3.6  -3.40403   GGCGCAGCTTTAGTG                CTCG CCCC CGGG                 TTGTGATAAAAGACC  47 41
D3880_RS16160 3548362 .. 3548383 + -17.3  -3.93262   CGGCTGATGGCCTTG           CGGGGCGAG CCAG CTCGCCCCG            TTTCCTCTCTTCCCG 100 34
D3880_RS16165 NONE
D3880_RS16170 NONE
D3880_RS16175 NONE
D3880_RS16180 3552928 .. 3552960 + -14.2   -2.9627   GCAGGCGGGACAGAA     TGCAGAACGCCCGGC GAGT GCCGGGCGCT-TGCA      TCTCTACTGGGTTCA  75 508
D3880_RS16190 3554988 .. 3555004 + -10.1  -3.04501   CAGGTTCAGGCGCGG              CGCGCAG GCT TTGCGCG              TCTTCGCCACTTGAT  60 233
        rapA 3559128 .. 3559144 +  -9.5  -2.52464   CCCATCAAACCCGCG              TCCTACA GGT TGTAGGA              TGGGTTGAGCGCAGC  56 145
D3880_RS16235 3564654 .. 3564677 + -11.8  -4.60797   TGCATGAACCCGAAA          CCCACTGGCCA GTA TGGC-AGTGGG          TTTTGTCTATCCGCG  95 47
        livH NONE
D3880_RS16245 NONE
        livG NONE
D3880_RS16255 3568425 .. 3568450 + -10.3  -5.10461   CTCGGCCAACAAAAA         GCCCCACTCGG TTCG CCAAGCGGGGC          TTTTTGTTGGGTGCC 100 50
D3880_RS16260 NONE
D3880_RS16265 NONE
D3880_RS16270 NONE
D3880_RS16275 3571619 .. 3571632 +  -5.9  -3.01712   CAGCCACTCCTCAGG               GCCGC TGTA GTGGC                TGTTCAACAAACAGA  49 403
D3880_RS16285 3573054 .. 3573066 +  -4.7  -3.28712   CAGCAGGGTCAGGGT                GCCGC TGC GCGCC                TTGTCCAGCAGCGCC  49 164
D3880_RS16295 3574422 .. 3574456 +  -9.9  -2.78816   ATTCTTGAACTGTAG    CGGATCGCCCAGCTCC GCCA GGAGCAAGGCGG-CCG     TCTGCTCGCCGATGC  57 390
         gap 3576992 .. 3577012 +  -4.5  -2.82635   ACACCGAACGCTCGG            CGTCGGCGC ACA GCACCCGCG            TCTCGTGCTGGCGGT  44 488
D3880_RS16325 3579670 .. 3579687 +  -3.3  -3.62591   CCAGACAAGGCGCGA             TTGGGCG AAGA CGCACAG              TTTACGAGTTGTAAA  51 77
D3880_RS16355 3588267 .. 3588279 +  -4.7   -4.0641   GGCTCAGGTTGCGCC                CCGCC GTC GCCGG                TTTCTCTGCCTGGCC  62 483
D3880_RS16375 NONE
D3880_RS16380 3590891 .. 3590920 + -23.7  -3.79519   CTGCGCCACAAAAAA       CCATGAGGCCCGC GACT GCGGGCCTCATGG        TTTAGTCCTGCAGTT 100 49
D3880_RS16390 NONE
D3880_RS16395 3592284 .. 3592314 + -16.9  -3.53091   GACTCCACAACCCTG       CCAACAGGCCCGC TTCGT GCGGGCCTGTTGC       TTTCCGCCAGCCGAT 100 43
D3880_RS16400 3595210 .. 3595227 + -14.1  -4.64861   TAGATCATCTTCTTC             GGGCGCC TACT GGCGCCC              TTTCTTTTGCCCGCG 100 107
        metG 3599836 .. 3599861 + -11.1  -3.17792   CGACTTGTTTGCCCT         GGCGGCCTTTT CGAT AATGGGCCGCC          TGTTCCCTTGCTCTT  69 140
        rsxA NONE
        rsxB NONE
        rsxC NONE
D3880_RS16435 NONE
        rsxG 3605230 .. 3605258 + -10.1  -4.07568   CCGCATGGCCCGTTT        GCAGGCGCAACCC GAA GGGCCGGGCCTGC        TTTTGCGCAGCGCGG  80 144
D3880_RS16450 NONE
         nth NONE
D3880_RS16460 3607023 .. 3607040 + -14.1   -5.4251   CCCGCTCAATAAAAA             GCCCCGC AGCT GCGGGGC              TTTTTTATGTCTGCG 100 41
        pyrC NONE
         rnt 3611739 .. 3611756 + -14.1  -4.70887   AACGCCCAATAAAAA             GCCCCGC AACT GCGGGGC              TTTATTTATTGCTGG 100 70
D3880_RS16495 3613094 .. 3613110 +    -8  -5.64274   CCCGCACTCGCAAAG              CCGGAT CTAGA ATCCGG              TTTTTTTATGCCTGG 100 45
         bfr 3613763 .. 3613779 + -15.1   -5.1861   CGCAGGCACAAAAAA              GCCCCGC ATC GCGGGGC              TTTTTTCATACTGCG 100 44
D3880_RS16515 3617084 .. 3617103 + -12.8  -5.38951   CCCCTGATCGAAAAA            GCCCTGCC AACT GGCGGGGC             TTTTTTATGTCCGTT 100 45
        argF NONE
D3880_RS16525 3619848 .. 3619904 +  -8.8  -3.28924   AGGACGAAGCCGTAG CTGCCGCGATCGGCCAGCG-CCTTCTG CTGGGC CAGCAGGTCGTTGGC-GAA-GCGGCGG TTGTACAGCCCGGTC  58 401
D3880_RS16555 3625656 .. 3625672 +  -3.5  -2.93623   TCAGCCTACTCGCCA              GCGCAGC TTT GCCGGGC              TACTATTTTCGGAAA  42 109
        glpD 3627437 .. 3627472 + -10.2  -2.66964   CCAACTCGGCGATAC    GCTCCTGCAGCGCCTG CAGT TGGGCGCGGCTGGCGC     TGATGTCGTCGATCA  57 193
D3880_RS16595 3636755 .. 3636784 +  -5.7  -3.05816   ATAGCCCGGGTGCAA       TCCGGGGTAGTCGC AGC GCAATT-TCCCGGA       TTGCATCCGGGCTAC  49 37
        metR 3641752 .. 3641777 +  -6.8  -3.87583   GGAAAATACTTCGGA         TGGCCGCCGG TTACCC TTGGCGGCTA          TTTCGATTTAAATTT  65 77
D3880_RS16625 NONE
D3880_RS16630 3646198 .. 3646222 +  -4.1  -3.82084   CTTGGTCAGCAGCTC          CTGGGCCTGCT GGT AGTCGGCCGGG          TTCTTGCTGTTGGGC  57 520
D3880_RS16645 NONE
D3880_RS16650 3649203 .. 3649219 +  -5.7  -2.55074   AAGCGCAAAGGGCGG              CGACGGG TAA CCCGCTG              TAGGTTGGCGTTGAG  46 190
D3880_RS16675 3655689 .. 3655733 +  -7.8  -3.18912   CCTCGCGGCAGGCTG CTGCTGGCGCGCC-GAGGCCAT CCG GTGTCCACCGACGCG-CAGCAG TTCGTGACTGCCTGC  57 73
D3880_RS16695 3658308 .. 3658323 +  -2.5  -3.55761   TTCGCGATGCGGACA              GCACGG AGCCG CCG-GC              TTTCGCGGATGAATC  47 107
D3880_RS16710 3660908 .. 3660932 +  -7.2  -2.64333   GCGACGGTTGAAGCA         CAGGA-GCTCA GATA TGGGCGTCCTG          GTATTCCTTTTCCGC  49 276
         lon 3673307 .. 3673333 +  -8.1  -3.06696   CCCCGTGGCCGGGGC        GCCGAGCAGACGC AGA GCGTCT--TCGGC        TGTATTCCCACGCCG  56 77
D3880_RS16745 3674118 .. 3674160 +  -5.7  -3.23984   TGCACGGGCATAGTG CCAGCCCATCGAGCCATTCCT AGG GGGAATT-CT-GATGCGCTGG TTAATCCTGGCTTTA  50 296
D3880_RS16750 NONE
D3880_RS16755 3675467 .. 3675485 + -13.2  -3.88823   GGGGTCGGGCCCAGG             GCCGGTTA AAA TAACCGGC             TTTCCCTTTCGTATT  91 49
        cmoA NONE
        cmoB NONE
D3880_RS16770 3677476 .. 3677520 + -11.4  -3.25823   TGATCAACCTGCTGC GCCGCTGAGCCTCAGCCGC-GC GCC GCTGCGGC-GACGATCAGCGCC TTCATCTCCGCCACC  69 18
        nadB 3690267 .. 3690307 + -10.5  -3.01791   ACTCCACAGCTGCCA GCCGGCGG-CG-T-CGTGAC GCAC GCCACGGAACGCCCGCCGGC TCTTCAGCAGCACCT  60 394
D3880_RS16850 NONE
D3880_RS16855 3692733 .. 3692748 + -11.8  -4.17048   GACTCGCGCTGGAAA              GCCCGC TTCG GCGGGC               TTGTTTTGCCCGGAC  89 60
D3880_RS16860 3693331 .. 3693347 +  -2.9  -2.82516   CCAGGGGGCGCCAGC              GCCGG ACTGCCC TCGGC              TATGCTGATGAGCAG  39 89
D3880_RS16865 3694365 .. 3694389 + -10.7  -2.81547   CGAGCGCAGAATCAG          GTGCTTGGTCG GGT CGATCAGGCGC          TCCTTGCTCTGCGCA  61 157
D3880_RS16880 3696569 .. 3696581 +  -9.1   -3.1886   GCTCACCCTGCGGGC                CAGCC TGC GGCTG                TTACTCCGCTTCGCT  61 206
D3880_RS16885 3697672 .. 3697684 +  -3.4  -3.34488   ACGCCTGACGAGCAC                CACA ATGAA TGTG                ATTTTTGAAGAACTT  47 107
D3880_RS16890 NONE
        mmsB 3699925 .. 3699946 +  -7.9  -3.08867   CTGTTGCCTTCTTCG           TCGGTGACG GTGT CGGCGCCGA            TCTGTTCGAGCTTGG  54 215
D3880_RS16915 NONE
D3880_RS16920 3714673 .. 3714700 +  -2.7  -4.13767   TTGTCGTCTTCCAGG        TCGATGGCG CGGATGTAAC TGCCGTCGA         TTTTCAGGTAGGCCA  59 416
D3880_RS16945 3720609 .. 3720647 +  -8.8  -3.54424   AGGCACGCGAGCTGA  TCG-GCAGCGCGGCGGA AGTCAC TCCGCCGCGGCGCATGA   TTTCAGCGAGTGGGG  66 26
D3880_RS16955 NONE
D3880_RS16960 3723924 .. 3723947 +    -8  -3.15544   ACGCAGCCAGGGGCT          CGCGCAGCAG GCAA CTCCAGCGCG           TTCATCCAGGTGAAG  57 202
D3880_RS16965 NONE
D3880_RS16970 3725474 .. 3725484 +  -2.4  -3.02471   CGCCTGTATATCTGA                 GGGC TGC GCCA                 TGTCTCTGATCGAAA  41 26
D3880_RS16975 3726225 .. 3726267 + -10.5  -3.05596   GGATGGGTTGAGCCT GCGATACCCATCGCCCCAC TCGAC GCCGCTCGATGGGTATCGC TTCGCTCAACCCATC  64 131
         uca 3730176 .. 3730216 +  -6.1  -4.15044   CCCGTCCCTCTCCCT AACCCTCTCCC-CCCTTC TTTTAT GAAGCGCGGGAGAGGGAA  TTTATTGAGCAAGCC  68 141
        atzF NONE
D3880_RS16990 3733660 .. 3733678 +  -3.1   -3.1268   TGTTCATGATCTTTC            CGCAGGCT GTGG AGTC-GCG             CTTTTGCCCTTATCC  45 46
D3880_RS16995 NONE
D3880_RS17000 3734918 .. 3734930 +  -3.3  -3.53722   AAACTCCGCTCCCTC                GGCCA TTT TTGCC                TTGTCTGGCTCTAGC  49 116
D3880_RS17005 NONE
D3880_RS17010 3737418 .. 3737430 +  -6.9  -2.57344   TCACCGACTCGGACA                GCGTC TTC GGCGC                CTTGTAGGGGCGGTC  47 361
D3880_RS17025 3742329 .. 3742367 +  -7.4  -3.51232   TCGGAATATGGGCCC  GGCAGTACCGAGTCGCT GCATCA AGCG-CTCGGTGCGGGC   TTCATTTCCAGGCCG  58 42
D3880_RS17030 3742532 .. 3742547 +  -7.5  -5.05116   GGAAACCCAGAAAAA              CCGGC CACCGA GCCGG               TTTTCTTGTTTCTGA  89 72
D3880_RS17095 3759776 .. 3759799 + -18.2  -5.24129   GTCGCACAAAACGAA          GCCGCTCTCC CTCG GGAGAGCGGC           TTTTTTGTGGGCCAC 100 85
D3880_RS17100 3761429 .. 3761452 + -15.4  -3.57144   CCCCCCTGTCAGTTA          GTAGGCCGTT GAAA AACGGCCTAC           TTTGCCGATCCGGCC  93 47
D3880_RS17125 3766748 .. 3766759 +  -3.6   -4.4078   ATGATCGGGTTGTTG                CTGC TGAC GCGG                 TTTTCCTTGGGAAAG  68 400
D3880_RS17160 3777724 .. 3777750 + -10.2  -5.22006   AGTCGATATGAAAAA        CGCCCC-CTTC CCTGTT GAAGCGGGGCG         TTTTTATTGTCATCA 100 44
D3880_RS17225 NONE
D3880_RS17230 3791934 .. 3791952 +   -16  -6.09888   TTGCCCGCTCCTCTT             GACCGGCC TCT GGCCGGTC             TTTTTTTTCTTGGAG 100 48
D3880_RS17235 3792400 .. 3792413 +  -3.7  -3.53012   CTGACAGACCGGCAA               CCACG CCCC CGAGG                TTTCGCAAGAACGAA  49 37
        cysD NONE
        cysN 3800006 .. 3800048 + -14.9  -2.71144   CTTACATTGACCGAC GCG-CCATTCGCG-CCGCCGC CCT GCGGCGGCCCCGAATGCCCGC TCGTTCAGGAGAGTC  77 133
D3880_RS17260 NONE
D3880_RS17265 NONE
D3880_RS17270 NONE
D3880_RS17275 NONE
D3880_RS17280 NONE
D3880_RS17285 NONE
D3880_RS17290 3805458 .. 3805470 +  -6.2  -6.09133   TGCAGCGCAAAAGGC                CCGC ATCAC GCGG                TTTTTTTTTGCGCTC 100 58
D3880_RS17300 3807348 .. 3807367 +  -2.1  -3.55801   TTTCCACGCGTGATT            CGTTGAT GGACTG ATCACCG             TTTACAACAGTTGCT  47 28
D3880_RS17305 3808437 .. 3808463 +  -4.4  -3.75024   ACCGAAGCACTTTTC        CTGGCGATGGC ATCGGA GCCTTC-CCAG         TTGTTCATGGTGCCG  55 294
D3880_RS17365 NONE
D3880_RS17370 3822126 .. 3822136 +  -6.8  -3.02144   AACCCACCGACCAGG                 CTGG ACG CCAG                 TGTTCCGGGCGCTGC  52 110
D3880_RS17375 3824702 .. 3824724 + -14.8  -4.27316   CTAGCTTGTTTGAAG           CGCCCGCTGC ACT GCATCGGGCG           TTTTGCATTGCAACG 100 313
D3880_RS17435 3838470 .. 3838498 +  -6.6  -2.93073   GCCCATGGCGGGATG       GCTGCTAGCCGGC CAGC GCCGCCC-GCAGC        TCGTTCTTGACCACC  51 91
D3880_RS17490 NONE
D3880_RS17495 3854178 .. 3854204 + -10.1  -5.47218   CAGCTGACCGCTTTT        GCCGGGTTCGCC TGCG GGCG-GCTCGGC         TTTTTTTCACTCCCC 100 34
D3880_RS17500 3855027 .. 3855037 +  -2.4   -2.5919   GCGCTTCGTGCCCTG                 AGCC ACC GGCC                 TACCTTCCTCTGATC  38 25
D3880_RS17505 NONE
        dmpG NONE
D3880_RS17515 3858662 .. 3858676 +  -3.5  -3.65902   GGCGTCATAGATGAC               TACCG CGGCT CGGTG               TTTGCGTAGGGTGGG  51 266
D3880_RS17525 3859793 .. 3859807 +  -4.9  -3.55444   CAAACAGCTCCGGCG               GCGCT GCCGA GGCGC               TTTCGCCAGTACCGC  52 238
D3880_RS17540 3866280 .. 3866313 +   -11  -3.05596   GTTGGGTCGAGCGGA     GCGATACCCAACAC CTGGCC GCGATGGGTATCGC      TTCGCTCAAACCATC  68 97
D3880_RS17560 NONE
        chrA NONE
D3880_RS17570 NONE
D3880_RS17575 3872001 .. 3872040 +   -10  -2.80816   CCGGGATAAAGGCGG  TGCCAAGCCTTTCGCGAA TGAA TTCGCTACAGGTTCGGCA   TGTGCTGACTGCCCA  61 132
D3880_RS23115 NONE
D3880_RS23120 3872872 .. 3872898 +    -2  -4.07568   CGGCGGCCTCCTTGG         CCCCCCGCCCAG CAC CTGGCCTGGCAG         TTTTCCGCAGGCCAG  57 345
D3880_RS17585 3873681 .. 3873694 +  -3.7  -4.16842   TCCACCCGCTTGAAC               CCGGC CCAG GCCGC                TTTCTTGGAGATCCA  62 307
D3880_RS17590 3874481 .. 3874496 + -10.4  -2.52464   GGATGGGGGCCGCTG              TGCGCC CCTT GGCGCA               TGAATTCGCACCCAC  60 63
D3880_RS17600 3875546 .. 3875562 + -13.7  -5.24129   GCGCGCAACAAAAAA              CCCGCTC AAT GAGCGGG              TTTTTTGTGGGGCGG 100 57
D3880_RS17700 3898539 .. 3898568 + -15.1  -5.24129   TGGAGCTCAAAAAAA       TCCGGCCATGC CCTTGCAA GCATGGCCGGA        TTTTTTATGCCGGCA 100 101
D3880_RS17735 3907159 .. 3907175 +  -9.4  -2.90496   CTGTTTCTGCGCGGC              GCGTCG TTGCT CGACGC              TCATTTGGAACGACC  59 183
D3880_RS17755 3915313 .. 3915343 + -25.6  -3.53012   GGAGCGACGCTGGAA       CCAAAACGCCGGGC ATT GCCCGGCGTTTTGG       TTTGCACCGCCGCCC 100 43
D3880_RS17785 NONE
D3880_RS17790 NONE
D3880_RS17795 3924488 .. 3924500 +  -4.7  -3.42574   TGACCAGAGCGGAGC                CGCAC GCG GAGCG                TTGTCGTGCAATTAC  52 88
D3880_RS17800 3926326 .. 3926348 + -14.9  -4.86731   TGTAAGTCGGCCAAA           GCCCCTCTC CCCAT GAGAGGGGC           TTTTGTTTACAGCAG 100 53
D3880_RS17805 3927026 .. 3927046 +  -8.2  -4.07885   CGCAGTGGGAACCTG            CCCCAGCC CCTCT GGCTGGGC            TTTTCCAGGAAACTG  71 175
D3880_RS17810 3927888 .. 3927925 +  -5.5  -2.64218   ATGCGCGACTGCGGC   GGCGCGATGGCCA CCCGCTGCACCA TGGCCGGCGTGCC    CTTCTCCTCCAGGGT  44 408
D3880_RS17820 3931211 .. 3931237 +   -18  -3.14132   CTCCTCCCACAACTG         CGCGGCACCGGG GAA CTCGGTGCCGTG         TTCGTCGCCCAGGGC  86 180
D3880_RS17830 3932285 .. 3932300 +  -7.5  -4.12902   GTGCGAGCGCAAGCC              GCGCG CCAGCA CGCGC               TTTTCCACATCCTTG  69 151
D3880_RS17840 3933851 .. 3933902 +   -27  -3.05384   CCCACTCGGCGCCCT CAG-CGAGCAATAAAAAACGCCAGC ACT GCTGGCGTTTTTTATTGCTCGACAG TTACCTCACCCCACC 100 49
D3880_RS17850 NONE
D3880_RS17855 NONE
D3880_RS17860 NONE
D3880_RS17865 NONE
D3880_RS17870 NONE
D3880_RS17875 3942559 .. 3942571 +  -9.1  -3.14564   AACCCATCCTACGAT                TCCGC ATC GCGGA                TTGGTGCGCCCGTCC  61 167
D3880_RS17895 3945007 .. 3945017 +  -2.4  -4.09685   CTGCGGTGGTGGAAA                 ACGC TTC GCGG                 TTTTCCACCCTACGC  57 103
         pyk 3946725 .. 3946743 +   -16  -4.82901   CCCCGCCATGCAAAA             GGCCGCTC GAT GAGCGGCC             TTTTTATGCACGAAC 100 128
D3880_RS17920 3951523 .. 3951541 + -13.1    -5.252   CGCGTACGACACAAA             GCCCGGC CTAGC GCCGGGC             TTTTTTATGGGCGTC 100 49
D3880_RS17975 NONE
D3880_RS17980 3961741 .. 3961755 +    -7  -3.20901   TGGCGAGCCCGAAGA               GCAGCG CGA CGCCGC               TTAGATTCGTAGGGT  54 7
D3880_RS17985 3962469 .. 3962484 +  -4.7  -3.63627   GCATCCTGAAAGTTG              GGGAT ATGATC ATCCC               TTTCCAATCTGAAGG  54 93
D3880_RS17990 NONE
D3880_RS18000 3963522 .. 3963537 +    -6  -2.96249   GCAGCCGCAGAATGC              GCCGCC AGGT GACGGC               TAATTATTCCTGCAA  48 7
D3880_RS18005 3964272 .. 3964287 +  -4.6  -4.08216   TGTTCTTGAGTCGAT              CACGCC TACG GGCTTG               TTTTCCAGAAAGTGA  62 349
D3880_RS18020 3967039 .. 3967055 +  -2.1  -3.44794   CATTTCAAGGAGCGG              GCCCATG CCT CCTGCGC              TTCTCGTCCTCGCTT  47 102
D3880_RS18025 NONE
D3880_RS18030 3969301 .. 3969318 + -14.1  -3.62849   CCTGGAATGAAAAAA             GCCCCGC AATT GCGGGGC              TTCTGCTTTCGTAGG  88 46
D3880_RS18040 3970872 .. 3970892 +  -2.5  -4.56597   CCGCTGCGCGGCTGA            GCGTCGT AGGGGGG ATGGCGC            TTTTTCCAGCCACCG  66 26
D3880_RS18050 NONE
D3880_RS18060 3974941 .. 3974966 +  -5.3  -4.08692   CTGTAACTCGGCCGA         GCCGGCGCC-GA AGC TCTGGAACCGGC         TTTTCCACACAGTTG  65 35
        sodB 3975758 .. 3975772 +  -8.5  -5.42514   CAGGCCAAGAAAAAA               CCCGC ATTCC GCGGG               TTTTTTCGTTTCTAC 100 51
D3880_RS18080 3979310 .. 3979335 +  -4.1  -3.73936   AATCGGGCTCAGAAT         GCTCA-TTTACA GCT TGTAAACTGCGC         TTCTTCGTCCAATTT  54 84
D3880_RS18095 3982439 .. 3982462 + -18.2  -5.60993   CTAGCAGTACCGAAA          CGGATGCGGC GCCT GCCGCATCCG           TTTTTTTATGCCCAC 100 45
D3880_RS18100 NONE
D3880_RS18105 NONE
D3880_RS18110 3986181 .. 3986193 +  -3.3  -2.71712   GAAGCTCTGAAAGCC                CTGCG CTA CGGAG                CTTTCAGGCGCGCCC  41 39
D3880_RS18115 3988042 .. 3988069 +  -2.5  -4.62783   CGCCGAATCACAGGT        GTATCCCGGCG CCAGAC CGGCGGGCAAC         TTTTTGCCATGCCTC  68 133
D3880_RS18120 NONE
D3880_RS18130 3992560 .. 3992577 + -14.1  -5.31275   GCTCTGAACGAAAAA             GCCCCGC ATCT GCGGGGC              TTTTTTGTACTGGCG 100 34
D3880_RS18160 3998471 .. 3998502 + -19.5  -4.56597   GAGCCAGCGCTGACC      CGTCCAGCCCCGGC TCCGT GCCGGGGCTGG-CG      TTTTTCCCAACCGGA 100 28
D3880_RS18165 3999261 .. 3999284 +  -8.8  -3.53012   GCGCCTAGGGCCTAC          TCGCGCCG CAGTACGC CGGCGCGG           TTTCGCGCGGGCACC  66 33
D3880_RS18190 4003732 .. 4003763 + -21.8  -4.07568   CGCGCCCCACCCCAA      CCAAAAAGCCCTGC CTGC GCAGGGCTTTTTGG       TTTTACCAGCCGACG 100 42
D3880_RS18200 NONE
D3880_RS18205 4007032 .. 4007050 + -14.6  -4.63486   AGCAGTCATAAAAAA             GCCGGACT CGA AGTCCGGC             TTTTCTTGAGCGCCT 100 30
D3880_RS18220 NONE
D3880_RS18225 4010544 .. 4010562 +  -4.4  -2.93623   TAGTGGCGCGCTACC             CTGCCGAC TCC GTCTGCCG             TGATCTTTTCCGCCA  45 38
D3880_RS18230 4012799 .. 4012810 +  -5.8  -4.28774   CTCCGGCTGTTACTT                CGCT TCGC AGCG                 TTTTACCTTGCCTGA  68 232
D3880_RS18235 4013428 .. 4013441 +  -5.2  -2.57013   AAGTGCTCTGGCAGG               CGGC GCCGAA GCCG                TAGGTTGGGTTAGGC  43 9
D3880_RS18260 4020358 .. 4020374 +  -3.6  -4.25104   CGTAACGCAGGCCGT              CCTCGT TGAGC ACGCGG              TTTTCATCGACCACG  65 338
D3880_RS18355 NONE
D3880_RS18360 4041936 .. 4041972 +  -3.7  -3.05384   AGAGAATACCAACTC    GCTCCGCCTGGAT ACTCCGGCACC ATCCACGCCGAGC    TTAACTCGAACGCAA  43 73
D3880_RS18365 NONE
D3880_RS18370 4043249 .. 4043267 + -14.6  -5.80951   TCGCAGAACAAAAAA             GGCGATCC ATC GGATCGCC             TTTTTTGTTTTCACT 100 46
D3880_RS18410 4049374 .. 4049391 + -14.1  -5.06414   CCTGAACGAAAAAAA             GCCCGGC ACAA GCCGGGC              TTTTTCTTGCAGCGC 100 36
D3880_RS18420 4051710 .. 4051729 +  -7.8  -2.78596   GCCCAAGGATAGGTT            GGCCG-CCG GGC TGGACGGCC            TATGATCGGCGCATC  53 49
D3880_RS18425 4052755 .. 4052772 + -12.7  -5.42131   CGCCAGAACGCAAAA             GGCTGCC CGTG GGCAGCC              TTTTTTGTGTGCTTC 100 46
D3880_RS18445 4056636 .. 4056653 + -14.1  -5.10461   TGGCCGCAATAAAAA             GCCCCGC CTAG GCGGGGC              TTTTTATTGGGTGAC 100 47
D3880_RS18465 4062099 .. 4062128 + -16.5  -5.40072   GCCCCTGAAACCACA       GAGCCGGACCC ACTTGCAC GGGTCCGGCTC        TTTTTTTCACGCGAC 100 49
D3880_RS18520 4071325 .. 4071337 +  -3.3  -2.66316   AATATGCATGACCTG                CTGCG CGC CGGAG                TGATGTGATGAGCGA  40 5
D3880_RS18525 NONE
        lptC NONE
        lptA NONE
        lptB NONE
D3880_RS18545 4075399 .. 4075414 +  -6.1  -4.56597   AAAGTGTTCCGGTGA              CAGGC CCGTTA GCCTG               TTTTTACACACGGCA  74 61
        raiA NONE
        ptsN NONE
        rapZ NONE
D3880_RS18565 4077409 .. 4077436 + -17.8  -4.72272   GCAGCCAATGAAAAA        GGGGCTGC-CAGC CTA GCTGTGCAGCCCC        TTTTTCATGGCGCCG 100 43
D3880_RS18575 4079914 .. 4079947 +  -6.6  -3.43492   GCGGCGGCCGTTGCC     GGTGCGCGCCACGCC CATCA GGCG-GGCGTTCAGC     TTGTCCTGCATATAG  55 525
        gatC NONE
        gatA NONE
        gatB 4094110 .. 4094133 + -18.2  -3.48276   GTTGCTCACCCTAAA          CAACGCCGGG CTAG CCCGGCGTTG           TTCTATCCGGAGACC 100 41
D3880_RS18635 NONE
D3880_RS18640 4095001 .. 4095011 +  -4.6  -3.09516   GTTGTGACAAGCGCC                 GTCC GTT GGGC                 TTCGGTGCTACGCGC  46 94
D3880_RS18655 4099809 .. 4099846 + -13.9  -2.60075   GGCAGCCACTGAGTC   CTGCCGCCCGGGCGCGC GCAG GCGCGGCCGGGCTTCCG    CTTCCTTCCCCCACA  72 29
D3880_RS18660 4101102 .. 4101150 +  -5.8  -3.14344   GTAGTGCAGGCGCCG CGGCTCGATGCCGGCGGCCCTG GCCAG CAGCGCGATCTGCATCCAGTCG TTGCTGCCGAGGGTG  49 494
D3880_RS18675 NONE
D3880_RS18680 4106053 .. 4106097 +    -7  -3.16564   AGGGCGGTGAGCACG TCGTCGGCGTCGGCCGGCTTGC ACA GGTAGTTGGCCG-CGCCG-CGC TTGATCGCCTCCACC  52 371
D3880_RS18695 4108901 .. 4108928 +  -4.9  -3.28712   CTCATTCCCTACAGC        GCC-TGCAGG CGGCATAGC CCTGCATGGC        TTCTCGCAAGACCGC  49 122
D3880_RS18700 4110650 .. 4110670 +  -4.6  -2.53911   TGGCACGAGGGGTTG            CCGACCTG ACGGC CTGGTTGG            TGGGTTACGCCTTCG  42 98
D3880_RS18705 NONE
D3880_RS18710 4113618 .. 4113650 +  -6.1   -3.6715   GCCTACAAGGGCCCG      CAGCGCCGCGCAAAC ACG GGTTGCACCGGGCTG      TTTCAGCTTCGATCG  57 146
D3880_RS18715 NONE
D3880_RS18720 NONE
D3880_RS18725 4116753 .. 4116763 +  -2.4  -3.13403   CGATCAACGCCTGAC                 GGAC AAC GCCC                 TCTTCCTCCGGGAGA  43 27
D3880_RS18755 NONE
D3880_RS18760 4126005 .. 4126022 +  -8.3  -3.81414   CCTGACCACAAAAAA             ACCCCGC AGAT GCGGGGC              TTGTTCGTTGCAGCT  67 36
D3880_RS18790 NONE
D3880_RS18795 4134133 .. 4134152 + -10.6  -3.35996   CTACGAAAACGGCAA            GGCCCGCC ATTG GGCCGGCC             TTGTCACTACAGCTC  68 99
D3880_RS18805 4137310 .. 4137356 +   -10  -2.71791   GCCCGAGGCAGCCTG CAGGATGGGGTTGAGCGAAGCG ATA CCCATCGCTCGACCCCATAAGG ATTTCGCCGCCGGCT  61 43
        nadC 4143063 .. 4143078 + -10.4  -2.52516   TGAAAAATACGGTCT              CCAGCG AGAC CGCTGG               CTTGATAGTCAGCAG  56 297
        pilB 4148470 .. 4148494 +  -6.4  -3.31144   AAACACTGAGAACTA         CCTG-CTCAGG ACAC CCAGAGACAGG          TTCTCCAGCTAGGGC  56 109
D3880_RS18855 NONE
D3880_RS18860 NONE
        coaE NONE
        yacG 4151592 .. 4151604 +  -6.9  -2.71011   CAGGGCCACTCAGCG                CGGCG GCT CGTCG                TCCTTCCAGGGCGCT  50 191
D3880_RS18885 4153423 .. 4153436 +  -2.3  -2.54896   GCGTGCTGTTCGATC               TCGGC ATCA GCCTA                TGAGTTCGCTGCAGG  38 9
D3880_RS18890 4153956 .. 4153966 +  -3.2  -3.64703   TAGAATGCCGACAGC                 CCTT AGC GAGG                 TTTCCATGACCAGCC  51 51
D3880_RS18895 NONE
D3880_RS18900 4155586 .. 4155613 +   -17  -3.19463   GCAGACATAGCAAAA        CCCCCTCGAGGC TTGC GCCTGGAGGGGG         TTGCTGAATGGTGGG  89 101
D3880_RS18920 NONE
D3880_RS18925 4158842 .. 4158858 + -15.1  -5.28176   AGCAGGCAGAAAAAA              GCCCCGC CAT GCGGGGC              TTTTTTCTGCCTGCA 100 40
D3880_RS18945 4164483 .. 4164501 +   -16  -4.62475   CGAACGCATAAAAAA             GGGAGGCC CAC GGCCTCCC             TTTTCATTTGTGGAT 100 47
D3880_RS18960 NONE
D3880_RS18965 NONE
D3880_RS18970 4169878 .. 4169892 +  -4.9  -3.21276   TCAAACTGGCCAACG               CCTCC TCGGT GGGGG               TCTTGTCGAAGCCGG  47 416
D3880_RS19045 4185755 .. 4185792 +  -5.5  -3.34895   GGGCCGACCGACTCC   TGGGGCGTTCTGCATGCT CAG AGC-TGCTGGACGCGCAA   TTCCTTGGGCATGGA  52 505
        rpsT 4193695 .. 4193709 + -12.8   -5.4833   AGCTTGCATAAAAAA               CCGGCC TTT GGCCGG               TTTTTTATTGCCTGC 100 47
D3880_RS19110 4198625 .. 4198643 + -13.1  -4.67038   CACAGTTACGAACAA             GCCCGCC CTTCC GGCGGGC             TTTTCATTTTACCCG 100 45
D3880_RS19115 4198989 .. 4199016 + -15.7  -3.40403   GCCGCTCAAGAAAAA        GGCCGAAAACC CGTGCA GGTTTTCGGCC         TTGTCATCCAGCCGA  89 41
D3880_RS19145 NONE
D3880_RS19150 4206838 .. 4206861 +  -2.3  -3.69605   GCCGTTGCGCAGCAG          TTGGCGGGC ATCCTC GCCGGTCAG           TTCGTTTTGCGTCGC  51 485
D3880_RS19165 4214275 .. 4214325 +    -4  -3.79113   GCCTTTCATATCCCA GCAGC-GGGCGGATGGGGTAG AATTCGCCCC CTCTTTCATCCGCCCAGCTGA TTATTCTCAGGGGAT  54 94
D3880_RS19170 4215618 .. 4215636 + -13.1  -5.72622   TGCGCAATAGAAAAA             GCCCGGC CAAGT GCCGGGC             TTTTTTGTTTCTCAC 100 45
D3880_RS19195 NONE
D3880_RS19200 NONE
        mscL 4223531 .. 4223562 + -18.8  -3.05816   GGCAGGACCTGGAAA      GGCAAAACAGCGCC CTCG GGCGCCGTTTTGCC       TTGACTCACCAGTAG  90 44
D3880_RS19230 4225638 .. 4225671 + -12.6  -3.05596   GGATGGGTTGAGCCT     GCGATACCCATC AACCCGCACC GATGGGTATCGC      TTCGCTCAACCCATC  72 131
D3880_RS19275 4236977 .. 4236996 +  -5.7  -3.01924   TCGCCACCTCGTTGC            GCGTGGCC TTGCC GGCCA-GC            TGTTCGACCAGGGTC  47 244
D3880_RS19285 NONE
        trmA 4240606 .. 4240616 +  -2.4  -3.16564   CCAGGGCCAGGAACC                 AGGC GCC GCCG                 TTGATCAGATACAGG  42 438
D3880_RS19300 NONE
D3880_RS19305 4242510 .. 4242558 + -18.4  -3.41229   TTCAAGGTGGCGCAA CTCTGAAC-G-CCCCTCGCCCT CTCCCGA AGGGCGAGGGGACTGTTCGGAG TTGTCCTGACACTAT  95 20
D3880_RS19315 4244050 .. 4244062 +  -6.2  -2.80816   TTCATGCTGGTCAGC                CCGC GGCCG GCGG                TGTCCTGAATAGCGG  46 5
D3880_RS19320 4244731 .. 4244746 +  -6.8  -3.57144   CCGAGGCCACCTTGC              CCATCG CCAG CGGTGG               TTTACGGGTCACCGA  58 235
D3880_RS19335 4247062 .. 4247075 +  -4.5  -4.09108   GAACCCGCCGCCGCC               CCGAT AGTC GTCGG                TTTCTATGACTTCCC  61 201
D3880_RS23140 4247790 .. 4247803 +  -3.7  -3.65046   AGTGCTTGGGGTAGC               GGCCC TTGA GGTCC                TTCTTCACCTCGGCG  54 39
D3880_RS19350 4250811 .. 4250831 +  -6.1  -2.72344   CTACGGCCTGCATCC           GGCG-GCC TGAGAT GGCGCGCC            TGCTTGCCGGTCACC  46 16
D3880_RS19355 NONE
D3880_RS19360 NONE
D3880_RS19365 4252910 .. 4252925 +  -3.2  -4.57837   CGCGTTAGCCGCAAG              CGGCTT GCCG AGGCTG               TTTTTAACGCAGTAT  68 218
D3880_RS19385 4257451 .. 4257466 +  -8.2  -3.74077   AGGCGATAGCCCTGG              GCGGCG ATGG TGCCGC               TTTCCATGTCTACCG  65 416
D3880_RS19410 NONE
        thiE NONE
        hemL 4267453 .. 4267476 +  -4.5  -3.73072   AGCCGACGCGTTTCG          TCG-GTGGGC ATACC GCCCGCTCGG          TTTCCTGAGGCGCTT  57 136
D3880_RS19425 4268115 .. 4268138 +  -2.4  -3.31322   CAAATCATCTTTTTA          GTTAGCGAGTA GCT TGC-CGCTTAC          TTATCCGGCATTGGC  44 77
        miaB 4269942 .. 4269955 +  -8.1  -3.60792   GCTTGCACTAAAACC               GCAGG CGCC CCTGC                TTTCACCCTTGGGCG  64 30
D3880_RS19440 NONE
        ybeY NONE
D3880_RS19450 4272520 .. 4272530 +  -2.4   -2.6627   CCCTACGCGCTCCTC                 CCCG CTT CCGG                 CTTCTCCTAGCTTCC  38 206
         lnt 4274441 .. 4274453 +  -2.6  -4.09739   CACCAGCAGCACTCG                GCGG ATGCC CTGC                TTTTGCAAGAGTTCA  58 362
        leuS 4278328 .. 4278347 +  -2.8  -3.36785   GTCGTACCTGGCAAG            CTGGTCAAC ATA GTCG-CCAG            TTGATTACCCTCTGC  44 2
        lptE 4279062 .. 4279095 +  -9.3  -3.04144   ATCAAGCTGCAGTAA     GCCATCCGGGGCCGC CAGC GCGGCCCCGTTCGCC      TCTTCGCCATGAAGC  60 26
        holA NONE
        arfA NONE
D3880_RS19490 4281774 .. 4281793 + -12.8   -5.4505   GATCGGCAATAAAAA            GGGCGGCC CGCG GGTCGCCC             TTTTTTATTGCCGCC 100 43
D3880_RS19555 4294399 .. 4294410 +  -2.2  -3.05384   CGCTGCCGGCGGCGG                CCTG CGCC TAGG                 TTGGCTGGAGGAGCC  41 15
D3880_RS19565 NONE
D3880_RS19570 4297667 .. 4297705 + -10.2  -2.61264   ACGCTGGATCAGCAC   CAGCTGTTGCTGTGGCTC ATC GAGCTGCAGCAACTCCAG   CTTCTGCGTCAGCGG  57 235
D3880_RS19590 4300152 .. 4300172 + -19.7  -3.58522   CCCGCGTTGCACCCC            CGGGGCGCC GCC GGCGCCCCG            TTTCCGCCTGATCGT 100 185
D3880_RS19595 NONE
D3880_RS19600 4302635 .. 4302656 +  -7.2  -3.53012   TGAGTTGCGCAAGCT           GGGGCGCT AAACTC ACCGCCCC            TTTACCGCGAAGAAG  58 16
D3880_RS19605 4303165 .. 4303195 +  -8.2  -2.52676   GCGTGTACCAGTCCA      GGCGCG-TGCCGG CATACA CCAGCGGCGCGCC       TGGCTTGGCCGCATC  51 217
D3880_RS19630 NONE
D3880_RS19635 NONE
D3880_RS19640 NONE
D3880_RS19645 4312427 .. 4312438 +  -3.6  -3.63694   CCCGAGCGCAATCGG                GCGG CATG CTGC                 TTCTTCGCCGTGCAT  51 340
D3880_RS19650 4314398 .. 4314422 + -11.3  -3.01791   AGCTGCGCCTGACTT          CGGCCGTGCCT GCC GGGCGCGGCCC          TCTTCCCGGAGGACT  68 47
D3880_RS19655 4316032 .. 4316049 +  -6.9  -3.05816   ATCCGGGGCGCGGAG             TCGGGGG GACT CCCCGGA              TTGCATCCGGACTAC  52 247
D3880_RS19660 4317528 .. 4317553 +  -3.2  -4.09685   TTTGCACATCCACCA         CCGCGGCGGTG GAAAA CGCT-TCGCGG         TTTTCCACCCTACAA  59 53
D3880_RS19665 4318815 .. 4318849 + -12.1   -3.4678   ACCCCGCAGAGAGCC    GCCGCCCATCG-GCGGC GGC GCTGCACGC-GGGCGGC    TTCTGCTATGCCAAT  79 44
D3880_RS19670 4320859 .. 4320895 +  -7.2  -3.65046   GGCGCTGCCGCGAGT    GGCCAGGTAGAAGGCC TGGAT GGCGTTCAGCTTGGTC    TTGTTCAGCTGCGCG  61 408
D3880_RS19690 4326481 .. 4326539 + -21.9  -2.99937   TGTTGGGGGCGTGAG -CGTAGCCCGTCTGCAATCCGGGGCAAC TGTG GTCTTCCCGGATTGCAGACGGGCTACCA CTTGTTTCGGTCTTG 100 27
D3880_RS19700 4328758 .. 4328772 +  -4.2  -2.71712   AATGAGCATTCCGAA               GCCGTT TTT AACGCC               GTTTGGCCGACGCGC  43 116
D3880_RS19705 NONE
D3880_RS19710 NONE
D3880_RS19715 4330763 .. 4330789 +  -6.4  -3.05935   CTGACGCCGCAAACA         GCGCTTGCCG TCGCCCC CGGCTTGCGC         TTGGATAGAGGCTCT  52 55
D3880_RS19720 NONE
D3880_RS19725 NONE
D3880_RS19730 NONE
D3880_RS19735 4332790 .. 4332807 +  -4.1   -3.9009   CCGGGGGAGAGGGCG             TTGGCCA TGCA TGGGCAA              TTTGTAGGATGGGTT  56 70
D3880_RS19740 4333640 .. 4333657 +  -6.9  -3.22409   GGGTTTGAAGCCCGG             CCACGCC ACCG GGCGTGC              TTGCCTTCCTGATTG  54 130
D3880_RS22895 4334910 .. 4334922 +  -4.7  -3.18264   GCTTGCGCAGCAGCA                GGCGC ACG GCGGC                TTCGTCGATGGCCAG  47 462
D3880_RS19795 4345947 .. 4345964 +    -4  -4.87665   AGAACGCGACCTTTT             GCCGGC ATACTG GCCGCC              TTTTTCTGCCTGGAG  77 162
D3880_RS19800 4346476 .. 4346529 + -15.9  -3.05384   GGCGACACGCCGCAG CGACAGCCAGAGCCCGGCTACGGGC AAGC GCCTGTAGCCGGGCTGTCAGTGGCG TTACATCACCACCGG  83 64
D3880_RS19825 4354209 .. 4354222 +  -6.7  -2.63596   GCGTCGCCCTATCTC               CTGCA TCCA TGCAG                TCGTCTCCCGTAAAC  49 81
D3880_RS19840 4361697 .. 4361724 +  -2.4  -2.78384   CGGCGGTCCCGCCTG        CGCGGGGGGATG ACGA CTACCCCAGGCG         TGTCCTAGAGAACAA  39 107
D3880_RS19845 4362482 .. 4362501 + -10.7   -4.8622   CGGGACAACAAAAAA            GCCCGCT CACGGA AGCGGGC             TTTTTCATTCCCGAG 100 269
D3880_RS19870 4368665 .. 4368675 +  -2.4  -3.02511   GCATGGCGGGCGCAA                 CCGC GTG GCGA                 TCTTCGCCGAATAAC  41 1
D3880_RS19875 4370962 .. 4370976 +    -7  -2.68072   GCCCAATCGTCACCC               CCGCCG CCG CGGCGA               CTTGGTTATCATGCC  49 259
D3880_RS19880 NONE
        aroQ NONE
        accB 4373803 .. 4373817 +  -5.7  -3.72576   TGGAATACGACCAGC               CGATG TTCAC CATCG               TTTGATGCGCGGGGA  60 6
        accC 4375206 .. 4375237 + -13.6  -3.85698   TGCTGCTCCGCTCCA      CCCCACGGGCTGCC TTCG GGCGGCCCGTGTGC       TTTGTAGCGGCGCCG  91 42
        prmA 4376194 .. 4376221 +  -4.8  -3.18274   GCCTCAGCGGCCGCC        GCCGCTGAGGC TCCATCC GCC-CAGCGCC        TTGAGTTAGACTAAA  48 18
D3880_RS19905 4377673 .. 4377693 +  -7.5  -4.11216   TTATCCAGTCAGCGA            GAGTGGGTA TCA TGCCCACCC            TTTTCGCACTCAACA  68 130
        dusB NONE
         fis 4379072 .. 4379103 + -11.4  -4.72386   GCATTCATACGAAAA      GGGCGGCCCCCAGA CTGA TCGGACGGCCGCCC       TTTTTCGCTGATTTC  95 45
        purH 4380802 .. 4380826 +    -5  -3.30159   CAAGGTTCCGCCAAT         GCTCA-TTGCC ACTA GGCAACTGCGC          TTGTCGAAACCTTAG  49 78
        purD 4382271 .. 4382312 + -17.3  -3.81146   GCCAGCACGTGATAC TCATGCCCCCGCCAGTCAG ATGG CTGGCTGCCGGGGTCATGG  TTCTTCGTTGGCGGG 100 43
D3880_RS19930 4385203 .. 4385213 +  -2.4  -3.03243   CGAGAGGAGGCACCA                 TGGC GTG GCCC                 TGTTCGCGGATAAAT  41 74
D3880_RS19935 NONE
        urtA 4387589 .. 4387601 +  -4.7  -3.14132   CGCCCTCCGGGAACA                GGCCG CCC CGGAC                TTCGTCCGGGCCACG  48 248
        urtB NONE
        urtC NONE
        urtD 4391260 .. 4391305 + -11.2  -3.89822   ACTCCGCACCGCTTG TCTCCCCTCTCCCGCGTGC GGGAGAGGG GC-CGGGGGAGAGGGCAGA TTTGTAGGGTGGATG  82 129
        urtE 4392345 .. 4392356 +  -5.8  -3.34013   GCACCGCTTTGGTTC                GAGG CACG CCTC                 TTGCTTGGCCAGATG  52 219
D3880_RS19965 4393322 .. 4393341 +  -3.5  -3.30124   AAAACCGAGCAATGC            CGGTGGA CAAGGC TTCGCCG             TTGTCCACCCTACGA  47 110
D3880_RS19970 NONE
D3880_RS19975 NONE
        ureC 4395918 .. 4395942 +  -9.2  -2.84325   TCTGTTCTGAGACCC          TCCTCGCCCG CTTAC CGGACGAGGG          TCGTGTTTGAGAGCC  59 31
D3880_RS19985 4396637 .. 4396652 + -10.4  -3.63694   AGGTTGAGGGCCTAG              GGCGAC TGGC GTCGCC               TTGTTGGGCATCGCT  73 34
D3880_RS20000 4400084 .. 4400099 +    -6  -3.53012   TGTTGAACAGATATG              CGCGCG CTGG CGAGCG               TTTACAAGGGCGCCC  55 481
D3880_RS20015 4401688 .. 4401703 +  -7.5  -4.75309   GCGGGCAAGAAAAAA              CCGGC ACGCGG GCCGG               TTTTCTTGGGTTTCC  85 44
        rarD 4403416 .. 4403426 +  -5.4  -3.28712   CGGGCCTGCCGCCAG                 GCAT CCC ATGC                 TTATCCCCACGACCA  52 78
        rhdA 4404779 .. 4404789 +  -2.4  -3.57462   CAACCACCCCGATAC                 GCCC GTC GAGC                 TTTAAGACTCCCCTA  49 10
         asd 4405768 .. 4405790 +  -7.6  -2.50947   TGGGCCATACTGAAA           GCCGGTGACC ATT GCTCACCGCC           CGTTTATTGGTTGGC  52 115
D3880_RS20050 NONE
D3880_RS20055 4409872 .. 4409889 +  -8.3   -4.4078   CACCCTTAATAAAAA             AGCCGCC CATG GGCGGCC              TTTTCATTGGGGGCG  77 42
D3880_RS20065 4412879 .. 4412895 + -13.7  -4.08216   AGCAGGCATAAAAAA              GCCCGCA ATA TGCGGGC              TTTTCCAAGGACTGC  95 110
D3880_RS20115 4423185 .. 4423208 +  -2.2  -4.09685   GCGGGGATAAGCTTT          CGTAGGGTGG AAAA CCGCGCAGCG           TTTTCCACCGTCGCG  57 31
D3880_RS20130 4428505 .. 4428522 + -14.1  -5.24129   GACGGCCCATAAAAA             GCCCCGC ATCG GCGGGGC              TTTTTTATGCGCCGG 100 43
D3880_RS20145 4431186 .. 4431200 +  -2.1  -3.40403   GCCGCGGCTAAAGCC              CG-GTG CCGT CACGCG               TTATACTGCCGACCG  44 48
D3880_RS20150 NONE
D3880_RS20155 4433240 .. 4433256 +  -2.1  -3.61715   CATAACGGAATTGCT              TGCGGGC GGT GCCGTCA              TTCTTCCCCGGAATC  49 36
D3880_RS20160 4434203 .. 4434243 +    -6  -3.17075   CGCAGGATTTAAACG CCTG-GCCTAGCGGGCCAG GAAG CTGTTCCGCCTGGCGTAGG  TTGGGTTGAGCGCAG  50 16
D3880_RS23145 NONE
D3880_RS23150 4443172 .. 4443206 +  -5.4  -3.40403   TATCCCAATAACGCA     GCGGCAATCGCCCGAG CAG CTCGCGCGCCAGCGGC     TTATCCTCCCGCGCG  53 226
        aceE NONE
        aceF 4463558 .. 4463574 + -15.1  -5.81412   ACGCTCGTTCCTCAA              CCCCGCC ATT GGCGGGG              TTTTTTTTGCCTGCC 100 79
D3880_RS20275 4466065 .. 4466077 +  -3.3  -3.28712   GCGCTCTAAGTAGTC                GTGCC GTC GCCAC                TTATCCGCCAGCCCC  47 228
        msrA 4466915 .. 4466933 +  -3.8   -5.1615   CAGATCCATAAAAAA            G-CCCGG CATCGA CCGGGGC             TTTTTTCACTCTTCG  84 141
D3880_RS20290 4469999 .. 4470024 +  -7.5  -2.72144   TGCATCCGGGCTACC         CACCACACCTG CCCC CTGCTGTGGTG          CTTTCAGCGCCATCC  50 197
D3880_RS20295 4471969 .. 4471981 +  -3.3  -4.28589   CGAGCCGCCCGAACC                GAGCC TAT GCCTC                TTTTGCGTACTTTTT  62 54
        mscK 4475349 .. 4475392 +    -5  -2.53995   CCGCGTCATCCACAC GCG-GCGGCGCGCGGGGCCAG CGT CTGGCGCCGCCCGTGGAGCCC TGCCTTGAAGTCGCT  42 97
D3880_RS20305 4476834 .. 4476844 +  -3.2  -2.50195   GAGTGGGGCAAGCAC                 CTGG AGA TCAG                 CTGTTCCTCCTGAGT  40 2
D3880_RS20315 4478798 .. 4478815 +  -5.5  -2.72324   ACAACATCTACCAGT             CGCTGGTC TGA GGCC-GCG             CTTGATTTCCCTGGG  46 15
        trxC NONE
D3880_RS20325 4479908 .. 4479945 +    -4  -2.94099   ACTCAAAACCCACCA   GAGG-TTTCGCGGCGCC GACGA GGCGCCGGGAGGGTCGC   TCTATGGTCAAACAC  42 88
D3880_RS20330 4480919 .. 4480931 +  -4.8  -3.02144   GGCATGCAGGCCTGG                TGCG ACTCG CGCA                TCTTCACCGAACTCA  45 198
D3880_RS20340 NONE
D3880_RS20345 NONE
D3880_RS20350 NONE
D3880_RS20355 NONE
D3880_RS20360 NONE
D3880_RS20365 4486174 .. 4486216 +  -5.5  -3.01712   ATCGCGGTGCTCCAC CCATCCTACGAGGAGCGTAC CGCC GTGAGCCTC-CGTAGGTTGG TGTTGAGCGCAGCGA  49 46
D3880_RS20370 NONE
D3880_RS20375 NONE
D3880_RS20380 NONE
D3880_RS20385 NONE
D3880_RS20390 NONE
D3880_RS20395 NONE
D3880_RS20400 NONE
D3880_RS20405 NONE
D3880_RS20410 4495913 .. 4495930 +  -5.5  -3.14229   CGCAAGCCGTTGGAG             GCGCAGTG ATC CGC-GCGC             TGTTGCTCGGCCTGT  50 17
D3880_RS20415 NONE
D3880_RS20420 NONE
D3880_RS20425 NONE
        fabG NONE
D3880_RS20435 NONE
D3880_RS20440 NONE
D3880_RS20445 NONE
D3880_RS20450 4501662 .. 4501691 + -22.3  -3.34344   CGCTGGCGCGCCATA       GCAAAAGGGCCGC TAAT GCGGCCCTTTTGC        TTCGTTCAGCGATGG 100 41
D3880_RS20510 4519956 .. 4519973 + -14.1  -5.12068   AGCGCCCAATAAAAA             GCCCCGC ATCG GCGGGGC              TTTTTATTACATCTC 100 54
D3880_RS20535 4526216 .. 4526232 +  -2.2  -3.63744   GCGCTGGTCGCTGGA              TGTCGA CCCGA TCGACC              TGTTTTAACCCACCG  49 1
        argS NONE
D3880_RS20545 4528808 .. 4528819 +  -7.2  -3.03159   CTGGATTTCCAGCCG                GCGG CAAT CCGC                 TGTTACAGCCATTAG  52 55
        hslV 4529482 .. 4529514 +  -3.1  -3.55444   GTCCACCCTCCTCTG      GCGGCTGCGCGCCGA CGT TCGCCGCCCCACCTC      TTTAGCGAGTCCACG  49 47
        hslU NONE
D3880_RS20560 4531296 .. 4531324 +  -4.6  -3.92373   ATCGGTGGTCAAGCT       GCT-GCTCTAACC CGCC GGTTAGGGCGAAC        TTTCTAAATCCCCTC  59 16
        phaC NONE
        phaZ 4534382 .. 4534404 +  -2.6  -2.71731   TGGAATGCTTATCCG           GCGAGCATTG GTA CAAGCCTTGC           TGCTTGCCCCATGAC  39 141
        phaC 4536158 .. 4536180 + -10.6  -3.23452   CAGCAGTGGCCACGC           CTGGTCGG CGGTCAT CCGACCAG           TTACCTTCTGGCCAT  65 42
D3880_RS20580 4536843 .. 4536863 + -15.4  -3.37796   AGCCTGAAACGCAAA            CGCCCGGC GCTAG GCCGGGCG            TTCTCGCTCCTGAAG  89 34
        ubiE NONE
D3880_RS20605 NONE
        ubiB NONE
        hisI NONE
D3880_RS20620 NONE
D3880_RS20625 NONE
        tatB NONE
        tatC NONE
D3880_RS20640 4545055 .. 4545111 +  -3.4  -3.02511   TCAGGCGGTACTCCT CGC-GGCGCGGGCGCTCCTGATAGGCG ACCT TGTCCAGCACCTGCGCCTGCACCAGCG TCTTCAGACGGTCGG  42 429
D3880_RS20650 NONE
D3880_RS20655 4547034 .. 4547046 +  -5.5  -3.14564   GCCACCGACCAAACG                GAGCG CCT CGTTC                TTGCTGGAGAAATGG  50 131
D3880_RS20660 NONE
D3880_RS20665 4549520 .. 4549553 +  -4.5  -4.13767   AGCGCTTACAGCAAT     GTAGGGTGGATGTCGC GCA GC-ACATCCACCGGCC     TTTTGGGGTGGCAAA  61 70
D3880_RS20695 4554853 .. 4554882 +    -5  -3.31144   AGGTAGTCGCGATCG       GGGTTGCCG-ACC AGCGC GGTGCGGTAGTCC       TTGTCCAGGTACAGC  49 433
D3880_RS20725 4559609 .. 4559643 + -30.2  -3.53811   GCCCTGGTGAAACAA     CAACGCCCCCGTCAGC CAG GCTGACGGGGGCGTTG     TTTCAAGCGGCTAGC 100 80
        glnA 4564810 .. 4564827 + -12.7  -5.31456   CTCTGCTGAACATGA             GGCCTCC TTCG GGAGGCC              TTTTTTATGCCTTGC 100 46
D3880_RS20745 NONE
D3880_RS20750 NONE
        glnL NONE
        ntrC 4568934 .. 4568964 + -25.6  -3.85698   CGCGCCCCTGAACCA       CGCAAAAGCGGGCC ACT GGCCCGCTTTTGCG       TTTCTCCGCCCGCCA 100 43
        trmL 4570213 .. 4570230 + -12.7  -3.73224   GGCGCCCATAAAAAA             CGCCGCT AAAA AGCGGCG              TTTGATACCCGGTCG  85 134
        gpmI 4573210 .. 4573239 +    -7  -5.75342   CACCCTGCAGATCCG       CGCCCACGCCCGC CATCC GCGG-CACGGGCG       TTTTTTTTGCCACGC 100 108
D3880_RS20795 4574558 .. 4574578 +  -5.4  -3.13403   CTCAGTGGTGCCGCG           CGCAGGGCT AGGA AGCTC-GCG            TCTTGGTAGCGCCGC  50 15
D3880_RS20800 4575964 .. 4575981 + -10.5  -5.24129   TGCAGAAACAAAAAA             CCCGGGC CTTG GTCCGGG              TTTTTTATGGGCCCA 100 55
D3880_RS20835 4580749 .. 4580759 +  -2.4  -4.09243   CCGCTACACGTCTGG                 CGGC GCA GCAG                 TTTTCCGCCACTCTG  57 103
D3880_RS20840 NONE
        mutY NONE
D3880_RS20850 NONE
D3880_RS20855 4584634 .. 4584654 + -10.4  -5.04601   AATACCGAACAAAAA            GCCTCAGC CAAGT GCTGGGGC            TTTTTGCTTTCTGGG 100 43
D3880_RS20860 NONE
D3880_RS20865 4586460 .. 4586489 + -13.5  -3.13164   CTACTGATGCCAGCC       GACTGGCGTCACC GTGT GGCGGCGCCGGTC        TTCAATAGTTGCCCC  78 34
D3880_RS20870 NONE
D3880_RS20875 4587897 .. 4587919 + -19.2  -3.41602   GCGTTGAGCATCCAA           GCCCCTCTCC GGC GGAGAGGGGC           TTATACTGCGCTGCC  95 34
D3880_RS20880 4589173 .. 4589197 +  -7.2  -3.88583   GCCGAGCGCGAATGA          GTTACCCACA CATTC TGTGGATAAC          TTTGTGGGCAGTTTC  65 26
D3880_RS20885 4589559 .. 4589578 + -11.4  -4.98531   TAAAACAACGACTTA            GGCTCACC GCAA GGTGGGCC             TTTTTCGTTTCCAGA 100 43
D3880_RS20890 4591993 .. 4592005 +  -3.3  -3.42147   CAGAAGCAGAGGTCA                GGCCA CGA TAGCC                TTCCTCTTGCTTCGC  49 55
D3880_RS20895 4594659 .. 4594710 +  -2.8  -4.18018   GGGGCTAAGGCTTTG CCGGCGGTGACC-CGGC-CCAGCG TGTTGT CGGTGGCGACGCGGCCACGGCCTG TTTTGCCTGCCACGC  60 109
D3880_RS20915 4596773 .. 4596798 +  -3.3  -2.52464   CCACGCCACCCCGGA        CG-AGCAGGGC GTGCTG GCCC-GCTACG         TCCGTTGGGGCGGCC  40 200
D3880_RS20920 NONE
D3880_RS20925 4597761 .. 4597772 +  -7.2  -3.82261   GCTGTCAACGCGAAA                GGGC TGGA GCCC                 TTGATTTTATTGGCG  63 89
D3880_RS20945 NONE
D3880_RS20950 NONE
D3880_RS20955 4603181 .. 4603228 +  -3.3  -3.98282   ATCCCGCTCAGGGGA AGCGC-CAGGCTGCCCACACCCC TTCC GGGGTATG-GCGACCTCCGCGCG TTTGATTCCTGTACC  56 361
D3880_RS20970 4605416 .. 4605433 + -14.1  -2.84919   GCTCGGAGCCCCCTT             CGCGCGC GTAC GCGCGCG              TACTTGTCACTAAAT  75 283
D3880_RS21010 NONE
        dctD 4614740 .. 4614750 +  -4.6  -3.55622   CGCCCTCCACCTTCC                 TGGC AGT GCCG                 TTTCAGCCGCTTCGC  52 103
        arcD NONE
        arcA 4617839 .. 4617851 +  -3.3  -3.58536   CAGCTTCAAGCAGTT                CTGAC GGA GCCAG                TTTCCAGCTGCCTTT  51 86
D3880_RS21030 4618900 .. 4618938 + -17.4  -5.09762   CATCTGACAGCCCTC   TCCCCGTTCGGCGCGC CTGAACC GCCCGCCGGGCGGGGA   TTTTCTTTCTTAGGA 100 34
        arcC 4620011 .. 4620059 +    -4  -3.62224   GAGACAAGGCAAAAA CGGCC-GAAAAAGCGCAGTTTACG TGT TGTAAA-TGAGCATTTTGAGGCCG TTCTTAACGCCGTAT  51 140
D3880_RS21040 4622626 .. 4622659 +  -5.9  -3.04322   CAGTCCGCAGTCCCT     TCGGCGAGCAAGCAGA ACT TCAGCGAGCT-GCCGA     TGTTGGCCAGTTCGA  49 451
        yrfG 4624706 .. 4624718 +  -3.3  -3.65046   GATCTTGTCCGGGTG                ACCGA GCA TCGGC                TTGTTGGCCTCGAAG  53 174
D3880_RS21065 4625993 .. 4626013 +  -6.7  -2.78384   ACCTCGGCGCCTGAG            CCAGGCGCG CGC CCCGCCTGA            TGTCATCGACGCCAG  50 27
D3880_RS21070 4626738 .. 4626789 +  -4.9  -3.34716   GACGACGACGACTGA TCGCCGCCCGGTTTGTTGCCGGC AGCCAC GCCGGCAACTGACCAACGGGCAA ATTTTTCGCCGCTGG  49 26
D3880_RS21075 4627354 .. 4627374 +  -6.1  -3.40073   CATACGGTGGTCTCC           CGCTGGCC GACAAA GGCC-GCG            TTCATTGATCCAGAT  52 89
D3880_RS21080 4628047 .. 4628084 +  -3.4  -3.14881   AAGCGCTCGACGAAG  CGGG-CGCCGAGCTTG CGCAAGAA CAGGC-CGGCGACCCA   TTGCTCGGCCAGTTC  44 422
D3880_RS21090 4632949 .. 4632960 +  -2.2  -3.78934   TTGGCTCATCGGTTT                CTCT CAAT AGGG                 TTCTTGTAGGAGCGA  52 508
D3880_RS21115 4638663 .. 4638706 + -14.6  -2.86271   AAAACACCAGGTAAC CGTCCTCGACCTTGCCAT AACGCAGC AGGGCCAGGTCGAGGGCG TAGTTCTGGTAGAGC  73 158
D3880_RS21150 NONE
        rimK 4647468 .. 4647485 + -14.1  -3.53779   CCCCAACAGTAAGAA             GCCCCGC AGCA GCGGGGC              TTAGTGTTTTAGGGC  86 148
D3880_RS21165 4652730 .. 4652746 +  -7.9  -3.36803   CCTCCACCGACGAGC              CGCCATG CAG CAGGGCG              TTGTCGATCAGGTTG  59 321
D3880_RS21180 NONE
D3880_RS21185 4657555 .. 4657582 +  -2.5  -3.17075   CCAAGGCCCAGGCCA        CCTTCGCCCAG GTCTGA CGCGGCGTAGG         TTGGGTTGAGACGCG  43 9
        gshA 4659363 .. 4659403 +  -9.6  -2.84602   TCGCCGCCTACCAGG CG-AGCATCCTCGGCCTGG CGGT CTAGGCCGGGGGCGCGGCG  ATTTAGTCGAGTGCG  59 0
D3880_RS21195 4659930 .. 4659964 + -17.2  -3.05596   TTGAGAAGCGCAGCG     CCGATACCCATCGCCG CGG CGCCGATGGGTATCGC     TTCGCTCAACCCATC  87 214
D3880_RS21210 4664264 .. 4664274 +  -2.4  -3.28712   CATCCACCCTACAGT                 GCCG TAG CGCC                 TTGTGCAGGAACCAA  44 108
D3880_RS21215 4666371 .. 4666395 +  -4.1  -3.60296   GTGCCTGGCCATCCC          GCCGGGCTCGG CAC CTTAGTCCTGC          TTTGCCCTAGCCATG  51 311
D3880_RS21220 NONE
D3880_RS21225 4673792 .. 4673818 +  -9.3  -3.55622   GCGCGCGCCGTAAGC         CAGCGGCCGAG GCCAG CTCGGGCGCCG         TTTGGCCGGGTTAGG  66 139
D3880_RS21230 4675601 .. 4675622 + -10.1  -3.05816   GAGACCGGCCCAGCT           GCACAGGCG GGCG CGGCTGTGC            TTAGATGGGGGCTGG  64 39
D3880_RS21235 NONE
D3880_RS21240 NONE
D3880_RS21245 NONE
D3880_RS21250 NONE
D3880_RS21255 4679824 .. 4679853 + -17.9  -3.53012   TTCAACCGCTGGTAA       CGACAAGGCCGCC CGAG GGCGGCCTTGTCA        TTTGGAGCGCGGAAA 100 26
D3880_RS21310 NONE
D3880_RS21315 NONE
        ssrS 4693503 .. 4693520 +  -8.3  -2.90075   ACCGGCGCCAACATC             CGCGCCG CGAC CCGCGCG              TCTCATTCGCCAGCA  55 61
D3880_RS21325 4694370 .. 4694381 +  -2.2  -3.61398   GTTCGCACTGACCGG                CGAC GATT GTTG                 TTATTAGGCCGAACG  49 243
D3880_RS21330 4695166 .. 4695217 +  -7.8  -2.90194   AGTATCAGGCGCGCG GGCTGGCCCAGCAGCTGG-AATCCA ATC TCGACGGCCAGCTGCAGGGCCTGCG TCTGCTTGCCGCGCT  55 223
D3880_RS21345 4698682 .. 4698730 + -11.7  -5.60993   GTGGTGCAAGTGCGC TGACATGGAAGCCGGAAGCTAGG CCC TCTAGCTTCCGGCTCTCACTTCC TTTTTTTGTGGACCG 100 23
         ppx 4705515 .. 4705550 + -11.1  -2.58861   GTTGCGCTCCATCCA    GTCGGCGCTGGACAG GTACAG CTGTTCGTCGCCGGC     GTTATGGAAGTAATA  59 252
D3880_RS21390 4709761 .. 4709785 +  -5.7  -3.28712   GGCCGGTCGCCAGCC          GGTGCGCAT GAACCAG ATGCGCAGC          TTGTCCCACCACGCC  51 440
        elbB 4711493 .. 4711510 +  -9.8  -2.94099   GATCACGCCATTCCA             CGCGGC ACTCGC GCCGCG              TCTCTGGTCAAACCG  62 82
D3880_RS21405 4712319 .. 4712332 +  -5.2  -3.71848   GGCCGCGCGGGTCGA               GGGC CGCCAC GCCC                TTCTTGATCAAGCGG  57 299
D3880_RS21440 4719485 .. 4719522 +    -7  -5.00616   GCCTGCGTCGCCACG   CTGCTGGTC-GGCTTGC TGACT GCAGGTTTGGCCAGCGG   TTTTTTCGCAACGGG  87 139
D3880_RS21450 4721316 .. 4721351 +  -9.8  -3.05596   GTCGCCATTGTCACA    GCGATCATTGAA-CGCC AGC GCCGCTTCGGTGATCGC    TTCGATGCGCGGGTA  60 188
        argH NONE
D3880_RS21505 NONE
D3880_RS21510 NONE
D3880_RS21515 NONE
D3880_RS21520 4734817 .. 4734844 +  -2.6  -3.40403   GTCCTGCGGGTAGAC        CAGGGTCAGGTGG TAT TC-CCTGCCGCTG        TTGTCGTCGCGGCAG  46 317
D3880_RS21545 NONE
        lysA NONE
        dapF NONE
D3880_RS21560 NONE
        xerC NONE
D3880_RS21570 4741753 .. 4741763 +  -2.4  -3.05384   GCAAAGCACGGGCTG                 ACCC GTT GGGA                 TTCCATCGAGCACAC  41 186
        rfbB NONE
        rfbA NONE
        rfbC NONE
        rfbD 4745299 .. 4745316 + -14.1  -4.82154   TGCCCCCATGAAAAA             GCCCGCC AAAT GGCGGGC              TTTTTGCTCTGCATT 100 147
D3880_RS21615 NONE
D3880_RS21620 4750325 .. 4750343 +  -8.8  -2.87344   CGGAGTTGCCGGCGT             TCCCGGAT TAC ATCCGGGC             TATCTGCACACCCTC  59 119
D3880_RS21655 4757112 .. 4757125 +  -4.5  -3.29461   CCCCCTCGGCGACCA               CCTCG AGGT TGAGG                TTATGCGCCAGGTTG  49 363
         rep 4760979 .. 4761013 + -10.1  -3.05596   TTGAGGAGCGTAGCG     ACGATACCCATCG AACCCATGC CGATGGGTATCGC     TTCGCTCGACCCATC  64 94
D3880_RS21670 4761823 .. 4761838 + -11.8  -4.15222   CGCAGAAACGACAAA              GCCGCC CGGA GGCGGC               TTTGTTGCAAGCGAT  89 143
D3880_RS21700 4766940 .. 4766963 + -15.2  -3.01712   AGTTCCACTCGGCCA          GCGCCGCCTC ATGC GCGGCGGCGC           TCTTGACCGGCAGAC  74 316
D3880_RS21710 NONE
D3880_RS21725 4772021 .. 4772040 + -10.6  -4.67982   TCCTGCGTGAACCTT            GGCCCGCC ACTT GGCGGGCA             TTTTCTTGCCTGCGG  89 52
D3880_RS21740 4774634 .. 4774677 +  -3.6  -3.35996   TCAGGCGCTGGGTCA GCACCCGGTCGGCCTGGCTCG GTT CG-GCCACCCCGGACGGATGG TTGTGGGTCAGGATC  49 177
       coaBC NONE
         dut 4777161 .. 4777205 + -10.5  -2.90075   CGGCGCTGCTGCCGA GCCTCGCGGCGGC-GCTCGC TGGCCT GCTCGCCGCCGCCGCGCTGC TGTGGTTCGGCGGCC  62 181
        algC NONE
        argB NONE
D3880_RS21770 4781146 .. 4781163 + -10.5  -2.79183   CGCCGAAACTCGCCT             CGGCCTG CTGG CGGGCCG              TCTCGTAACGCTGAA  57 144
D3880_RS21785 4783218 .. 4783252 + -21.7  -2.79302   GGTCGAAGTCCGAGG     CACAAAAAAGCCGGC ATTGC GCCGGCTTTTTTGTG     TCTGCTGCGCCTACT 100 41
D3880_RS21800 NONE
         gmk 4786088 .. 4786106 +  -2.3    -5.243   AGACTATCCAGTCCG            CC-CGCCC ATTC GGGCACGG             TTTTTTGCTCATTTA  83 92
        rpoZ NONE
        spoT NONE
D3880_RS21820 4789235 .. 4789252 + -14.1  -3.62597   CTCCAAGACCCTCCG             GCGGGGC CTGC GCCCCGC              TTCTTCCCGCATCGA  88 235
D3880_RS21825 4790103 .. 4790117 +  -7.8  -3.15544   AGCGCACGGGCGCGG               GCGTTG CTG CAGCGC               TTGCTGCCGGTGCGA  54 113
        exbB NONE
        exbD NONE
D3880_RS21845 4793213 .. 4793259 +  -5.7  -3.37522   CTCCCTGGATCGCCG CCGCTGAACGAA-CTGCGCCCG GCAG CGGGCGCAGATTCCCGCACAGG TTGGTTCCATCCAGT  52 19
D3880_RS21850 NONE
        recG 4796342 .. 4796354 +  -5.5   -3.1372   CCCTACGCTGGTCGC                CTGTG ACC CGCAG                TCTTAATGCCCGCTG  50 48
D3880_RS21860 4797837 .. 4797852 + -11.8  -5.03314   GCCAGGCAAGCAAAA              GGGGCC CAGC GGCCCC               TTTTTTACCCCTCGG 100 47
D3880_RS21900 4803770 .. 4803788 +   -16   -3.4252   ACGCAGAAACGACAA             CGGCGACC AAT GGTCGCCG             TTGTCGTGAATCGCC  93 131
D3880_RS21910 NONE
        ubiA 4806116 .. 4806133 +  -2.5  -4.35885   GCCCATCTTGCCGTC             GCCGGTG ACAT CCCCGGG              TTTCTTGTCCTGGAT  65 336
        phoB NONE
        phoR 4808686 .. 4808704 +  -4.4  -3.17075   CCTGTCACTTCCCCG             AGCCGCAG CTG CTCCGGCG             TTAGCTTGGCCGCCG  48 3
D3880_RS21935 4810142 .. 4810155 +  -3.7  -3.53811   CTCAAGCTGGATTGA               GCGGC GGGC GCCCC                TTTCACGGGCCTGCG  49 26
D3880_RS21955 4816028 .. 4816065 +  -7.7  -3.21276   GTCGCCAGCCTCGCA  CTGCGCCAGCGC-CTGC AACTCC GCCGTGCGCTGG-GCGG   TCTTCTGCGCCAGGC  54 429
D3880_RS21985 NONE
D3880_RS22840 4824365 .. 4824376 +  -2.2  -3.20432   GAGACGCCTAACAAA                TGGT TCAA GCCA                 TTCGCTTCGCTCTCT  43 49
D3880_RS21990 4825073 .. 4825084 +  -2.2  -3.19371   TCAAAGCCTAACAAA                CGGT TCAA ATCG                 TTCGCTTCGCTCACT  43 81
D3880_RS21995 4825671 .. 4825683 +  -9.1  -2.90941   CGAAGATCACAAGCC                GGCTC TTA GAGCC                TGTCTCGGATCTGCT  59 160
D3880_RS22005 4827803 .. 4827822 +  -5.6  -4.30576   AGCAAGGTGAAGAGC            GGTCAGTG AGCC CGCCGACC             TTTTCCTGATAAACC  71 17
D3880_RS22010 4829126 .. 4829166 +  -3.1   -4.7497   CACGGAGCGTTTTGG C-CCCCTCTCCCGTTCAC GGGAGA GGGTTGGGGAGAGGGGCG  TTTTTGATGGCTCCC  74 164
D3880_RS22035 4833996 .. 4834024 + -13.8  -3.86015   CCTGTCCGCTTTACG       CCGCAGCGGCGGC TCAA GCCG-CGCCGCGG        TTTGTCCCCGGCCTA  91 53
D3880_RS22085 4846264 .. 4846281 + -14.1  -3.91897   AAAAAAGCACAGAAA             CGCCGGC AGAC GCCGGCG              TTTCTGCCTGAGCCG  91 39
D3880_RS22110 4851877 .. 4851888 +  -4.4  -4.04579   AGGAGTAATTCCTGC                CCTT AATG AAGG                 TTTGCTCTTTCTAAC  61 33
D3880_RS22115 4853832 .. 4853844 +  -9.1  -2.83164   CGGGGTTGGGGTTAC                GGCTG TGA CAGCC                TGTCCTCGTAGCTGA  57 444
D3880_RS22200 4869985 .. 4870003 + -14.6  -5.60993   CCCCTCACCTTGATA             GGGATGGC TCT GCCATCCC             TTTTTTTGTCCGCGC 100 70
D3880_RS22205 4871062 .. 4871090 +    -8  -4.07568   CTGGTCGAGTAAACG        CTTTGCGTGGGG GGAAA CCCCACGCCGCG        TTTTCCACCGCGCAC  71 29
D3880_RS22210 4871771 .. 4871795 +  -7.1   -3.0976   TGCTCGGCTGAGGCG          CGCGAGGCA TACTTCT TGCCTCGCA          TATTGCCGTCTTCCC  52 30
D3880_RS22215 4872805 .. 4872831 + -10.2  -2.87132   CGGCGTCTCGCCGAG        CCGCT-TCCGC GCCTGA GCGGACAGCGG         TCTGTGGGCACGGCA  62 10
D3880_RS22220 4873984 .. 4874009 +  -5.3  -3.01712   ACGTACTGGAAGGCT         TCGAGGG-CGCC TGA GGCGTCCCTCCC         TATTCGCGGAGAACC  49 12
D3880_RS22225 4875140 .. 4875158 + -13.8   -4.4078   TGAACTCCGCCCAAA             GCCGGCCG CAC TGGCCGGC             TTTTGCTTGGGCGCG 100 38
D3880_RS22240 4879930 .. 4879965 +  -9.6  -3.08015   TCTTCACCGTCTTCG    GCGACAGCCGCAGGCT GCGC AGGCTGCGCTTGACGC     TCTTCAGGTGGTTGA  59 325
         zwf 4882470 .. 4882484 +    -7  -4.09685   CTGCCCAGCATTGCG               CAGCGC GTG GCGCAG               TTTTCCCGCCTAGCA  68 136
        uvrD NONE
D3880_RS22275 4889743 .. 4889755 +  -6.9  -3.36803   AACCCCGGCGATATC                CTGCG CAT CGCGG                TTCTGGCTGAGCTTC  56 318
D3880_RS22285 4891331 .. 4891346 + -11.8  -4.14725   TGCGCCATGAACAAA              CCCGGG CTTG CCCGGG               TTTGTCGTTTCAGTG  89 47
D3880_RS22295 4892600 .. 4892613 +  -2.3  -3.68222   CCCAGCAAAGAAGCT               GTGAC AACC GCCAC                TTGTTGGGCTTCGGC  49 107
D3880_RS22320 4898854 .. 4898883 +  -8.5  -3.28712   CCACAGTGGCGCGAC       CGGCCGCT-GCGCT GCC AGCCCTAGCCGCCG       TTCTCCAGCGCCAGC  59 2
D3880_RS22335 4902073 .. 4902098 + -11.1  -2.52464   TCCAGACGCTCTGCG         TCTGCGGGGCGC GGA GCGCCCC-CGGG         TGGGTTCCCACGCCG  64 71
D3880_RS22340 4903596 .. 4903643 + -11.9  -3.99592   GCAGCGGTCGAAACC CACAG--CGGCGCGCGGCAGGGG CCAA CCCTCGCCGCGCGCCGAACTCAG TTTGTCGTGATGCCT  82 53
D3880_RS22345 4904612 .. 4904650 +  -7.3  -3.05596   ATTTAGCCGCTGACC  G-GTGCGGCCGC-GCTACG GCC CGGTGCAGCGGCCGCAAAC  TTGCATAGCCAGGTG  52 185
D3880_RS22350 4905457 .. 4905471 +  -5.6  -3.05816   TGCACCGCCCGCCCA               TCGCCC CAT GGGAGA               TTCGATGCCCCATCA  49 247
D3880_RS22355 4907577 .. 4907605 + -18.8  -2.62983   GACCAGCACCGCCTG        CGGCCCGCGCGC CAGCA GCGCGCGGGCCA        TGCTCTCGCAGTCGC  87 420
D3880_RS22365 4908857 .. 4908873 +  -2.1  -3.59979   GCGAAGATCTCCGCC              TCGCGGC TCG GCCGGCA              TTTCAACTCGACGCC  48 287
D3880_RS22385 4911543 .. 4911560 +  -7.7  -3.36135   CTTCAGCGCAATCCC             GAACTGG TCTG CCGGTTC              TTCGTTCGACATTAT  59 85
D3880_RS22400 NONE
D3880_RS22405 4916676 .. 4916695 +  -5.6   -3.1855   GCGAAGATCAGCTCC            AGGCGCGA GTCC TTGCGCCA             TTCGCTGTTACGCCA  49 127
D3880_RS22415 4918420 .. 4918433 +  -3.7  -3.17723   CGGCATAAGCATCGG               CCAGC CCGC GCAGG                TTCGGTTCGGCCTGC  45 452
         cls 4922028 .. 4922054 +  -7.9  -3.53091   GGCACGGGTCCAGGG         CAGCTGGTGGG AGCCA TCCGCCAGCGG         TTTCACCGCGAGGAT  60 97
D3880_RS22455 4926359 .. 4926383 + -20.7  -3.15996   CAAGTAACCCGGCAA          GCCCGCCCGGC ACC GCCGGGTGGGC          TGTTCATGCATGATC  95 34
D3880_RS22460 NONE
D3880_RS22465 4928846 .. 4928883 +  -6.9  -3.36273   AGGTCAAGGGAGGGG   CTGCCAGGGACAGCG CTCAGTCA CGCTCTCCCCGACAG    TTCATGTTCCGGCCC  56 69
        rpmH NONE
        rnpA NONE
        yidD NONE
        yidC 4946571 .. 4946587 - -10.8   -4.3467   AGGCGGATAGCAAAA              CGCCCC ACGAG GGGGCG              TCTGCTTTCAGGTTA  87 59
        mnmE 4944798 .. 4944819 -  -6.5  -5.24129   CTTCTGGACAAAAAA           TAGCCAACC GGCC GGTCGGCTC            GAAGGTCCAGTCAAA  93 374
        mnmG 4942811 .. 4942833 -  -3.2  -3.00298   CTCGGTAACCATAGA           CATCAGGCGC TTT GCTCCAGCTG           GCGGCCGGCGCCGCG  43 5
        rsmG NONE
D3880_RS22535 NONE
D3880_RS22530 4940410 .. 4940423 -  -9.5  -2.85351   TGCGCGCAGAGTATA               GGGGG CGTT CCCCC                CCTATTCAACTGCCT  59 79
D3880_RS22525 4939907 .. 4939917 -  -2.4  -2.71791   ATGTTTGCCTCAAAC                 GCCC TAA GGTC                 TCGAAAGTCTTGTAC  39 18
        atpB NONE
        atpE 4938565 .. 4938590 - -12.7  -3.53012   TCGTTGTCCGTCAAA         CCAATCACTCG TAAT CGAGTGATTAG          CCTGCGAGTTGACCA  79 22
D3880_RS22510 NONE
D3880_RS22505 NONE
        atpA NONE
        atpG 4935039 .. 4935055 -  -9.3  -3.54459   TGAACCGTTCTTAAA              CCGCGGC AGC GCCGCCG              ACGATTTCCGAAATT  66 4
        atpD NONE
D3880_RS22485 4933106 .. 4933135 - -15.9  -4.42788   CGGAATTGCAGAAAA       GCAAAAGGGTAGC CAAG GCTACCCTTTTAC        TGGTTCGCGATGAAG 100 49
        glmU 4931652 .. 4931681 - -22.3  -4.42788   GTCAAGCCCATAAAA       GACCAAAGGCGGC CGTG GCCGCCTTTGGTC        AACGCATGTTCGCCT 100 40
D3880_RS22475 NONE
        glmS 4928903 .. 4928920 -  -8.5  -3.01712   TGTTCCGGCCCAACA             GTCTTCA TTCC TGAAGAC              CACTGGCGCGGGGGG  56 50
D3880_RS22450 NONE
D3880_RS22445 4923306 .. 4923346 -  -3.9  -4.63218   GTCCGCGGAACAAAA GGCAGGCAC-CAGCCAGC TGCTGT GCTGGCTGTGAACTTGCG  GAATAAAGTCTGTCC  70 185
D3880_RS22440 4921964 .. 4921993 - -15.7  -3.74077   TTCTATAGAGCGAAA       CCACGGGCACCCG CGCG CGGGTGCCCGTCA        GCGCTCAGCGATAGA  95 30
D3880_RS22430 NONE
        zigA NONE
D3880_RS22420 4917973 .. 4918010 -  -6.1  -2.55668   GAGCGGCAGAGCAAG   GGCGTGTGGATGGCGCGC TAG GCAGGCCGCCCT-ACGCC   AGCCAATCCAGGGTC  46 19
D3880_RS22410 4916455 .. 4916472 -  -2.6  -3.73953   ACGATCCGCAGCAAA             TGGCGC TATATC GAGCCA              GCCCTGCGGCACTAC  51 153
D3880_RS22395 NONE
D3880_RS22390 4911428 .. 4911438 -  -5.4  -2.52464   CCCCCCGGGAAGTTA                 TTCC CGG GGAA                 CTTTCCCGGTTGATC  44 67
D3880_RS22380 4909850 .. 4909871 - -13.7  -5.12707   CGAAATCCCAAAAAA           TAGGGCGCC ATCG GGCGCCCCA            AAGTCCACGCTCAAC 100 51
D3880_RS22370 4908427 .. 4908442 -  -2.5  -3.03124   CGTCACCGGCGAACA              GC-GCC TCTCC GGCAGC              CTCAGCATGTTCGGT  41 199
        pdxY 4907145 .. 4907160 - -11.8  -3.01712   GCCTCGGCCTGAACA              GCCCGC AGCA GCGGGC               GCCGGGCTCTTCGGC  68 109
D3880_RS22330 4899663 .. 4899687 -  -3.6  -4.13945   AGGTGCACTCGAAAA         GCGCAGTTGAC TGCA GTCAA-TGAGC          ATTTTCGGGTGCCCC  59 71
D3880_RS22315 4896984 .. 4897016 -  -4.1  -5.00616   CGGCCGGTGAAAAAA      TGGGCGGCTGC CAAAACTGAGT GCAACCGCCGA      GCAATTACCTATACG  77 34
D3880_RS22310 4895620 .. 4895660 - -19.4  -3.35798   ATCGCCTAGCGATAA GGGGTCGTAGTGAGTTAAT TCAG ATTAA-TCACTACGACCCC  TTTGGCGCGCTTAAG  95 36
D3880_RS22305 4894925 .. 4894965 - -19.4  -3.29144   GGATGGTCGCGATAA GGGGTCGTAGTGATTTAAT TCAG ATTAA-TCACTACGACCCC  TTTGGCCGACGGAAG  95 104
D3880_RS22300 4892597 .. 4892607 -  -3.2  -4.00756   GAGCCCAGCAAAGAA                 GCTG TGA CAAC                 CGCCACTTGTTGGGC  59 113
D3880_RS22290 4891327 .. 4891350 - -16.8  -3.14132   CTTCTGCGCCATGAA          CAAACCCGGG CTTG CCCGGGTTTG           TCGTTTCAGTGCCGG  89 150
D3880_RS22280 4889509 .. 4889519 -  -3.2  -3.35832   AAACGGCCGAAAAAG                 CGCA GCT TACG                 TGCGGTAAATGAGCA  47 153
D3880_RS22265 4883399 .. 4883414 -  -2.5  -3.56568   CAAGCATGGGGCAAA              CGCCT GCGACA AGGCA               GCCATCTTTGATTGG  49 80
D3880_RS22260 4882135 .. 4882157 -  -3.3  -3.96148   GCGTTCCAGCAGAAA          CGC-CGCTGG GATG CCTACGAGCG           CCTGCTGCTGGACGT  58 474
        hexR 4879827 .. 4879839 -  -4.8  -2.66274   TCTCCCATAATGAAG                GGTG GGGAG CACC                AGCATCGACCGCCGG  43 87
D3880_RS22245 4879315 .. 4879327 -  -4.1  -3.13403   GGCCTGCGAGGAATA                CTTCC AGC AGAAG                CGCGTGCACTTCGCC  45 279
D3880_RS22235 NONE
        oadA 4875196 .. 4875215 -   -15  -5.26918   ACAGCGCATAAAAAA            GGGGAGCC TCAC GGCTCCCC             AGGGGGACTTGCTCT 100 49
D3880_RS22195 4867274 .. 4867312 - -16.9  -4.83615   CAGGCGCGACAAAAA  CTAACAAGCCACG-CTGG GTAA CCAGGCGTGGCTTGTTGG   CGAATGAATTATGGC 100 146
        purE NONE
D3880_RS22185 4865616 .. 4865640 - -17.1  -2.64747   TGAGCTCAGGAGAAC          GCCCGACCTCG TAC CGCGGTCGGGC          TGGCACTTCAGCCTT  83 33
D3880_RS22180 4865229 .. 4865271 - -11.4  -2.69647   AAGCCGGACATACTA GCCGC-C-GCCCCTCTCCGAC TGCA GCC-GAGAGAGGCCGCGCGGC TGCTTATTTCTTGGT  65 29
D3880_RS22175 4864189 .. 4864206 -  -2.6  -4.46233   GCAATCGCAAATAAA             CTCTCG AATTCA CGAGTG              TTACTTGTGATGCTG  66 478
D3880_RS22165 4862490 .. 4862531 -  -2.3  -2.60075   TGCGCTCTAACCAAC TGAGCTACAGACCCAATCGT CTC ACTCTCGGGTCTA-AACCCA ATCGCTTTTCGCAAG  38 91
D3880_RS22160 NONE
D3880_RS22155 4862258 .. 4862300 -  -3.5  -3.54543   AGTTACTGGCGCAAA GACCAGAATTCAAGGCTCA CTCTT TAAGCATTCAATTCTGAGC TTTCAGCGATTGCGT  49 46
D3880_RS22150 4859169 .. 4859182 -  -5.3  -2.74192   CACCGTCCAACACCA               CAATC GTCA GATTG                TTTGGGTGTTATATG  46 38
         rrf 4858886 .. 4858921 - -23.4  -3.34398   TCCCGCGCGCAAAGA    CAAACCCCCAGCCTGC TGTC GCGGGCTGGGGGTTTG     GGATAGGAGCTTGAC 100 34
D3880_RS22120 4852970 .. 4852980 -  -2.4  -5.02074   GGACTGGCCAAAAAA                 TGGG AGT CCCG                 TTGTGAAGACGGCTT  79 466
D3880_RS22105 NONE
D3880_RS22100 NONE
D3880_RS22095 NONE
D3880_RS22090 4846256 .. 4846289 - -17.5  -3.60048   GCGCGGCTAAAAAAG     CACAGAAACGCCGGC AGAC GCCGGCGTTTCTGCC      TGAGCCGCCCGCCTA 100 38
D3880_RS22080 4843799 .. 4843817 - -12.4  -3.89971   GACAATTAGATGAAA             GGCCAGCA TAG CGCTGGCC             TGGCAGAAACAGCGC  86 487
D3880_RS22075 4842707 .. 4842719 - -10.5  -2.63596   GCTCACGCCAGAGGA                GCGGC GGC GCCGC                TCCTCGTGGCTTACA  60 36
D3880_RS22070 NONE
        pstA 4838403 .. 4838415 -  -2.6  -2.72379   GCAAGGCCGGAACCA                CCCA TCAGT CGGG                TCCAACGCTGGCGCA  39 80
        pstB 4837433 .. 4837473 -  -6.1  -2.70932   TGTGTTGGGCAAGGA GGCGCCGCGCAGACAGTAC GATTA GTACGG-CAA-GCGGCGCC GACGCAGCCCAGCGC  46 60
        phoU 4836581 .. 4836602 -  -7.2  -3.01924   GAGTGCTGGCCAATA           GCCAACCG TGCTGC CGGCCGGC            TCCGGGCTCAGACCC  52 33
D3880_RS22050 4835527 .. 4835554 -  -7.6  -2.73875   CTGTGGCCAAGACTA        GCAGCGGCGCCGG GCG CCGACGA-GCCGC        CGGCCGTCGGCTTGT  53 103
D3880_RS22045 4834479 .. 4834515 -  -4.1  -3.16564   CTCGCAGCCGACGAA    GGGCCACCCTCCGCAGG GAG CGCGCGGGCGACGGCCG    AAATCAGCTATTCGC  45 33
D3880_RS22040 4833617 .. 4833627 -  -6.8  -3.13403   GCGCTTCGACGAACA                 GCTG CGC CAGC                 TCGGCAGCCACGCCT  52 435
D3880_RS22030 NONE
D3880_RS22025 NONE
D3880_RS22020 4830569 .. 4830597 -  -8.7  -2.62983   GTTATCTCCATAGGA        TGGGTTGCGACGC GCA GCGGCGATACCCA        TCGGGACCGGGTTGA  56 226
        argE 4829352 .. 4829383 - -12.2   -5.1167   AACCCAATAGAAAAA      GCCCGCCACCCGAG CCTG CGCAGGTGACGAGC       CAAGCCCGGATCAGG 100 36
D3880_RS22000 4825669 .. 4825685 -  -7.9  -2.70923   GCCGAAGATCACAAG              CCGGCTC TTA GAGCCTG              TCTCGGATCTGCTGC  53 158
D3880_RS21980 4820641 .. 4820697 - -13.7  -3.28712   CGCGCCCTCTCAGAA CCTCGGCAACGTCTGCG-GCCCTGCCGC TCGG GCG-CGGGCCACGCAGACG-CGCCGTGG CACTCAGGAGCGCAG  81 29
D3880_RS21975 4819104 .. 4819129 -  -8.1  -3.05816   TTACGTGTTATCGAA         TGGCCGGGGCA GCAA CGCCCCGGCGG          TAGCTCATTTGCGCG  56 30
D3880_RS21970 4817568 .. 4817578 -  -6.8  -4.09685   GGCCACGGGCCAAAA                 CGGT TCC ACCG                 CGCGGGCTTCCTGAG  68 135
D3880_RS21965 NONE
D3880_RS21960 4815937 .. 4815985 -  -2.2  -3.70811   GGAGACAATGCCAAA GATGCCGGAACCGCGGAACGACG CTCG CACCGC-CGGCTGTTCCTGCGCC CTACCATCTGGGCGC  52 26
D3880_RS21950 4811878 .. 4811900 -  -2.7  -3.05963   ACCTCCACTTGAACA          GGGC-TAG-GG ACG CCGCCACGCCC          GCCTGCGCAGGCGCG  41 52
D3880_RS21945 NONE
D3880_RS21940 4810216 .. 4810228 - -10.5  -2.50816   CGGGGATCCAGCAAC                CGCCG CGC CGGCG                TCAATGCAGCTCGGC  60 26
D3880_RS21920 4805851 .. 4805901 -  -3.3  -3.54129   CATACCGCGTTGAAA TCGGGCTCGGGCTGCTCA-TTTACA ACT TGTAAACTCCGC-GCCCTCACCCGA TTGACTCGCTACGCT  49 198
D3880_RS21905 4803764 .. 4803794 - -25.6  -4.02253   TTAAGAACGCAGAAA       CGACAACGGCGACC AAT GGTCGCCGTTGTCG       TGAATCGCCTCAGTC 100 181
D3880_RS21895 NONE
D3880_RS21890 NONE
D3880_RS21885 4800881 .. 4800900 -   -15  -3.08695   CTGACAGAAACGACA            CGGCGACC CGCA GGTCGCCG             TCCAACTGTATCGCG  80 52
D3880_RS21880 4799552 .. 4799568 - -11.5  -3.28712   GCTGCTCGTCCAGAA              CAGCGCC CAA GGCGCCG              CAACAGCTCTGCGCT  72 146
D3880_RS21875 4799189 .. 4799212 - -19.6  -2.71011   AGGCTGGGCCAAGCA          GCCCGGAGCC GGCT GGCTCCGGGC           GCGAGCACGGCTCAG  88 37
D3880_RS21870 4798635 .. 4798677 -  -2.7  -3.81447   GAGATCCGACAAGAA CTGCCGCCAGCCTAGCG AATGGCTCTGG CGCC-GGCCAGCGGC-G CCCGCACGGATTGCG  52 43
D3880_RS21865 4797837 .. 4797852 - -11.8  -4.43477   GCCAGGCAAGCAAAA              GGGGCC CAGC GGCCCC               TTTTTTACCCCTCGG  95 47
D3880_RS21830 4789586 .. 4789605 -  -4.9  -3.06261   CCTGAATCTCGAAGA            CGACCAG CTGGTC CAGGTCG             AAAACGCCACCAGCC  45 432
         rph NONE
D3880_RS21790 4783227 .. 4783243 - -11.5  -5.28176   CCGAGGCACAAAAAA              GCCGGCA TTG CGCCGGC              TTTTTTGTGTCTGCT 100 45
        pyrE NONE
D3880_RS21775 4781033 .. 4781060 - -12.6   -2.6072   CAGCGAATGAAGGGA        TGCGCTCCCGGC AGTC GCCGGCAGCGCC         AAACAGCCACGCGAG  68 52
        radC 4774339 .. 4774394 - -13.9  -2.63079   CGGCTATATAAGGCA GCGCAGCAGCTGATCCAGCAGCAGGC GCTGT GGCTGCCGCTGGCGCACCCGC-GCGC CGCGGTGCTGGCGCG  69 155
        rpmB NONE
        rpmG 4772099 .. 4772114 - -11.8  -5.81412   TGCAGGCAAAAAAAA              CCCGCC GGAG GGCGGG               TTCTTTTCAGCAGGA 100 50
D3880_RS21720 4769809 .. 4769837 - -18.2  -4.54727   TGCCTGAAAGCAAAA        CGGCCGGGTTCC GCAAG GAAACCCGGCCG        CAGGTGTGGCTCAAC 100 99
D3880_RS21715 4768258 .. 4768293 -  -6.2  -4.19258   ATATGCGACCGAAAA    TGCTGCAAGTCTTCCCG CAG CTGGAAAACGT-CAGCA    TCGACTTCCAGTGGG  70 351
D3880_RS21705 4766650 .. 4766679 -  -7.7  -2.70932   CCGGTGCCGGAATGA       CTCCCCTCGCCCA TTTA TGGGAGAGGGGCC        GGGGGAGAGGGTAAA  53 89
        dadA NONE
D3880_RS21690 4764349 .. 4764368 -  -7.8   -5.5074   CAAGGGAATAAAAAA            GCCCGG GGTGAAAT CCGGGC             AAAGCAGGGTTCAAA 100 36
         alr 4763168 .. 4763185 -  -2.7  -3.01712   TCCCCCTCGGGAAGA             TACGG AAAGTTGG CCGTA              TCATGGCAACAGCGT  41 79
D3880_RS21680 4762521 .. 4762549 -  -3.7  -3.33509   GTCGAAACAACCCAA        CTTGTCGCAGG GGCATAG CCCGCGCCAGG        TGGAACCTAGACAGG  47 72
D3880_RS21675 4761816 .. 4761845 - -16.5  -3.85698   CCCGCGCCGCAGAAA       CGACAAAGCCGCC CGGA GGCGGCTTTGTTG        CAAGCGATGTGGACC  95 184
D3880_RS21660 4756906 .. 4756943 - -23.5  -3.33671   ACATCCACCCTACAA   CG-GCTGTAGGCGCGGGC CTG GCCCGCGCCTCCAGCGCG   GCTAACCCGGCAGCT 100 27
D3880_RS21650 NONE
D3880_RS21645 4752818 .. 4752834 -  -2.2  -3.58209   ACCAATCGACAAAGA              CGCGAA AAAAA TTCGCC              GGTCATTACTGCTGG  49 198
D3880_RS21640 NONE
D3880_RS22835 NONE
D3880_RS21635 NONE
D3880_RS21630 4750902 .. 4750949 -  -3.3  -3.28791   ATCTCTCCTTCAGAA TTGTGCCGGC-G-CCAGGCGCGA AGCC TCGCTCCAGGTCTGCCAGACCAA CTGGTGGCTGATAAC  47 69
D3880_RS21625 4750171 .. 4750201 - -10.4  -2.77523   TCTCGACCAACAGGA      CGCCATCGGCCGG CCGCAT CTGGCCGA-GGCG       CTGCAGTACCGGCCA  57 156
        glnK NONE
D3880_RS21605 4746296 .. 4746326 - -19.8  -3.85817   ATGGCTCCGCACAAA       GCAAAACGCCCGGC AGA GCCGGGCGTTTTGG       GCAAGCCGCGCGGGC 100 41
D3880_RS21600 4745748 .. 4745758 -  -6.8  -3.99805   CCGGAAAAATTCAAA                 TGGC CTC GCCA                 TGCAGGGTGGCGAGA  65 10
D3880_RS21595 4745299 .. 4745316 - -14.1  -4.72272   TGCCCCCATGAAAAA             GCCCGCC AAAT GGCGGGC              TTTTTGCTCTGCATT 100 47
D3880_RS21540 NONE
        cyaY NONE
D3880_RS21530 4735079 .. 4735100 -  -3.6  -5.04597   ACGGACACAGAAAAA           GCACAGCCC CCACC GGGCAG-GC           CGTGTGAAAACGTCG  80 168
         rnk 4734494 .. 4734513 -  -4.2  -3.53091   AGGCGCGCCTGGAAA            CGGCG-CTG AAC CAGGCGCTG            CAGAACGCCTAATGT  52 146
D3880_RS21495 NONE
D3880_RS21490 4726650 .. 4726680 -  -6.1  -3.61609   TTACGGAAATGATAA      CAGGCCAGCCG-ACC TCA GGCGCAGC-GGCCCG      GCCGGCGCCGCGCGG  57 228
        hemC NONE
D3880_RS21475 NONE
D3880_RS21470 NONE
D3880_RS21465 4722472 .. 4722506 - -15.8  -3.30243   ACCGACGCCTTACAA    GCCGA--GGCCGCGCC GGTCT GGCGCGGCCTATCGGC    GCAGGCCGACGGCGC  89 42
D3880_RS21460 4721862 .. 4721880 -  -4.4  -4.07568   CGCGCCTTGCGAAAA             GCCCATGG CGG CCGTCGGC             ATATGCCAGCCGGCG  61 64
         rsd 4721154 .. 4721179 - -14.7  -2.56596   GGCGTCAGCAACTGA         GCACCGCCGTC TTCA GACGGCGGTGG          AGGCACTTTGCCGAT  76 12
D3880_RS21445 4719321 .. 4719362 - -19.3  -3.28712   GGGCGGGCGGGAGAA CTGCACCACGGCGCGCTGC AGGT GCTGCGCGCCGCGGTGGGG  ACGGGCTAGCTCAGG  95 36
D3880_RS21435 NONE
D3880_RS21430 NONE
D3880_RS21425 4715529 .. 4715552 - -12.4  -5.45802   CCTCGAAAACAAAAA          GGGGCAGGCC GCCT AGCCTACCCC           TTGTGTCTAACCCAG 100 55
        rhtB 4714779 .. 4714830 -  -2.9  -3.70811   CCAGACAAGGCGAAA TCGGGCGAAGGC-GCGCAGTTTAC GAGTT GTAAATGAAGCAGCCTGAGCCCGA CTTCAACGCCGTATG  52 71
D3880_RS21415 4712648 .. 4712703 -    -8  -3.18582   GAGCGCAGCGACGAA GCCCAGCGAGCGGCGCCTATCA-CAGC ATC GCAGCTGTCCGGCTCCGTCCGTTGGGC TTCGCTGCGCTCAGC  57 47
D3880_RS21410 4712072 .. 4712095 -  -3.1  -4.09685   GTGTAGGGTGGAAAA          CCGCGCAGCG TTTTC CACT-CGCGA          AGCGGTGGAGGTGAA  59 64
D3880_RS21395 4708896 .. 4708914 - -12.4  -3.26471   CTATCTGGACATCAA             CGCGGTGA TCG CCACCGCG             TTCTTCGGCAGCTAC  71 440
        hemB NONE
        ppk1 4704781 .. 4704799 -  -7.3  -3.04144   CGCCGACCTGGAACA             GGCCGCG CGGGT CGAGGCC             AAGGCCTTGCAGGCA  51 501
        trxA 4703082 .. 4703100 - -11.7  -5.24129   CCGTGGCAGAAAAAA             GCCCTGC ATCTG GCAGGGC             TTTTACACGGCGGCT 100 40
         rho 4701593 .. 4701608 - -11.8  -3.56643   TGCAGATGCGCGAAA              GCCGGG TTTC CCCGGC               TTTCGCGGCCCAGCC  77 46
        ubiD 4700014 .. 4700024 -  -2.4  -2.87211   ATTCGCTCCTACATA                 GCTG TAC CCGC                 GACACCATCAGTCGA  40 33
D3880_RS21355 NONE
D3880_RS21350 4698692 .. 4698720 -   -19  -3.12351   TGCGCTGACATGGAA        GCCGGAAGCTAG GCCCT CTAGCTTCCGGC        TCTCACTTCCTTTTT  90 28
        fliL 4696945 .. 4696957 -  -9.1   -3.1886   AGCGAAGCGGAGTAA                CAGCC GCA GGCTG                GCCCGCAGGGCGAGC  61 205
D3880_RS21305 NONE
        pepP 4690664 .. 4690677 -  -2.3  -3.12668   GATCGCCAGATCGAA               GCGTG ACAT CAGGC                CGCCTGGCTGCGCGC  43 20
        ubiH NONE
D3880_RS21290 4688992 .. 4689008 -  -2.1  -2.66272   CCGCACGTAAATCCA              TGTCAGG CCG CCTGTCG              CGCACGCGGCTTGAG  38 11
D3880_RS21285 4687685 .. 4687723 -  -8.1  -3.06796   GCTGAGCGCAGCGAA  GCCCAACGAGCGGAGCCG CGAT CAGCCGCGAT-GTTGGGC   TAGCCACCGTCCGCC  56 71
D3880_RS21280 4686396 .. 4686422 - -20.9  -3.08494   AACAATCAGAAATGA         CGACGCCCCGG GCTGG CCGGGGCGTCG         AAGTATAAGCATTTC  95 143
D3880_RS21275 4684645 .. 4684667 -  -5.4  -2.52464   CTGTTGGTCAAGGCA           CTGGCACGCG TTG CGCACACCCG           GTCTGAATGACGGGC  45 109
        gcvT 4683393 .. 4683407 -  -9.2  -3.48668   ACTAGGAGACTAGAA               GGCGGA TGA CCCGCC               TGAAAATTTAGCAGG  66 108
        gcvH 4682909 .. 4682926 -  -8.4  -4.60808   TCAGAAAAAGACAAA             GCCCTG ACGAAG CAGGGC              TTGTGCAAGGATAGC  81 71
        gcvP 4679827 .. 4679850 - -18.2  -2.71263   AACCGCTGGTAACGA          CAAGGCCGCC CGAG GGCGGCCTTG           TCATTTGGAGCGCGG  86 182
        argE 4661303 .. 4661314 -  -2.2  -3.40597   TCGGGCATGGAAAGA                CCTGC GTG GC-GG                AACTCGAGTGCTCCC  44 167
        argA 4659922 .. 4659951 - -13.5   -3.2963   AGGATGGGTTGAGAA       GCGCAGCGCCGAT ACCC ATCGCCGCGGCGC        CGATGGGTATCGCTT  81 71
        ompR 4653757 .. 4653801 -  -7.2  -2.81471   CATAACGCGATCACA GGTGAATG-TGGGTTA-GCCGC GCA GCGGCGTAACCCACCATGCGGC CCGGAGGGGCGCCAG  50 90
D3880_RS21170 4652039 .. 4652053 - -11.4  -3.33696   TGGGGCTGGAAGGAA               GGCCAG ACG CTGGCC               TGGCTGGTGGACCTG  68 403
D3880_RS21160 4647468 .. 4647485 - -14.1  -3.82084   CCCCAACAGTAAGAA             GCCCCGC AGCA GCGGGGC              TTAGTGTTTTAGGGC  91 47
D3880_RS21145 4645367 .. 4645385 -  -5.8  -3.57462   GATTTTAGGCGCAAA             GCCCGAGG CGA CCAAGGGC             CTCTTGTCTATCGAC  57 69
        hslO 4644399 .. 4644433 - -12.8  -2.87132   TGCCGTTGCTACAGA     CCGCTGCCGGCACAGA AGT TCCGTGCCAGCAGCCT     CAGTGGCGGGTATCC  70 25
D3880_RS21130 4642616 .. 4642631 - -11.8  -4.90266   GGCATCAATGAAAAA              GCCGCC CGGA GGCGGC               TTTTTCGACGCGGGT 100 44
D3880_RS21125 4640267 .. 4640278 -  -7.2  -2.95091   ACGCCAACCTACACA                GGCC CCAA GGCC                 TCCAGCTGCCGGCGC  51 7
D3880_RS21120 4638088 .. 4638110 -  -5.4  -2.78384   GCCGCTTCGAGCAGA           TCCCCGGCCG CTT CGCCCAGCGA           CTCTGGATGAGCGAG  45 519
D3880_RS21110 NONE
D3880_RS21105 4634275 .. 4634304 -  -4.1  -3.05816   GTAGCCCGGATGCAA       TCCGGGGATC-GGC GTT GCCGGCTTCCCGGG       CTGCACCCTGGCTAC  43 158
D3880_RS21100 4632977 .. 4633013 - -14.7  -3.09516   TCTTGTAGGAGCGAA   TTCATTCGCGAT-GGG AGACAG CCCTATCGCGAATGAA    TTCGCTCCTACGGGT  80 51
D3880_RS21095 NONE
D3880_RS21085 4627547 .. 4627571 -   -10  -2.92371   ATGCACGCAACGACA         GCGACC-GCGC GCAG GCGCAAGTCGC          TAAGCACCGCCACGT  59 119
        lysM 4624586 .. 4624625 -  -8.7  -3.18839   ACGCGCAAACAGATA GCTCCTCTCCCCCT-TTCA CTTA TGACGAGAGGGAGAGG-GC  GAAATGGACGGCGCC  61 58
        nudE NONE
        cysQ 4621912 .. 4621922 -  -8.2  -3.61398   CTTCGGCGGCAACAA                 CGCC AGC GGCG                 TGCTGCTGTCGCCGC  62 506
D3880_RS21005 4609180 .. 4609206 - -10.1  -2.71712   GTCCCCTCCCGAAAC         GGCCCCGGTAC GGCAA ATACCGGGGCT         TTTCTTTGTCTGCAT  61 309
D3880_RS21000 NONE
D3880_RS22830 NONE
D3880_RS20995 NONE
D3880_RS20990 NONE
D3880_RS22825 NONE
D3880_RS20980 4605484 .. 4605496 -  -4.7   -3.1364   CACTGAATCATCCAA                GCCTG TCG CGGGC                TAGTTTCTCCTCGAT  48 5
D3880_RS20940 4599883 .. 4599905 -  -9.8  -2.62184   CCGCCTCGCAGAGTA           CCAGGTAGCA GGG CGCTCCCTGG           TGGATCGCCTGTACA  60 524
D3880_RS20935 4598294 .. 4598317 - -13.9  -2.60496   TCCTGCTCCAAATAT          CCGGCGTGT CATGGC ACACGCCGG           CTTACCAGGTAGAAC  72 45
D3880_RS20905 4594611 .. 4594635 -  -6.4  -4.03234   GGCCGGCTACACAAA         GCCGCCAGGCGG TCG CCGCC-G-CGAC         CGGTGGCTGGGGCTA  68 454
        hisB NONE
        hisH NONE
D3880_RS20820 4578615 .. 4578627 -  -3.3  -3.64487   CGATAGCGGGAATAA                TCAGC ATC GCGGA                AACCTGTTTGAGTCT  51 60
        hisA NONE
        hisF 4576932 .. 4576965 -  -5.1  -3.61654   CAGAGGGATCGGAAA     GGTGCTGGAGCGCAG CTCA CTGCGCTCGCGGAGC      TCAATAGTAGGCAAG  54 73
D3880_RS20805 4575964 .. 4575981 -  -8.3  -5.72622   TGCAGAAACAAAAAA             CCCGGGC CTTG GTCCGGG              TTTTTTATGGGCCCA 100 189
D3880_RS20785 NONE
        grxC NONE
        secB 4570213 .. 4570230 - -12.7  -5.24129   GGCGCCCATAAAAAA             CGCCGCT AAAA AGCGGCG              TTTGATACCCGGTCG 100 45
D3880_RS20765 4568934 .. 4568964 - -25.6  -2.70932   CGCGCCCCTGAACCA       CGCAAAAGCGGGCC ACT GGCCCGCTTTTGCG       TTTCTCCGCCCGCCA 100 268
        thiI 4561586 .. 4561607 -  -4.4  -2.71144   TACTGCCGCCAAGCA           GCCCCGGCT GTTTA AGCCGG-AC           GATAAACGCGCACAT  43 15
        typA 4559609 .. 4559643 - -30.2  -3.90744   GCCCTGGTGAAACAA     CAACGCCCCCGTCAGC CAG GCTGACGGGGGCGTTG     TTTCAAGCGGCTAGC 100 43
D3880_RS20720 4557239 .. 4557258 -  -2.8  -5.25906   AGAAAGGAAGAAAAA            TCGCGC GCAGTTTA ACGCGA             GTCGTGCGGCAATGC  83 83
D3880_RS20715 NONE
D3880_RS20710 4555561 .. 4555574 -  -3.1  -2.65774   GACAGGGACGACAAG               CTGAGC ATA GC-CAG               TTGCCGCATCAGCCC  40 47
D3880_RS20705 NONE
D3880_RS20700 4554466 .. 4554513 -  -7.9   -3.2963   AGGATGGGTTGAGAA GCGTAGCGCCGATACCCATCGTTG CAG CGCCGATGGGTATCG-C--TACGC TCAACCCATCCTACC  59 217
         pip NONE
         dtd 4552479 .. 4552493 -  -3.4   -4.4009   GGCGAGTCGACAAAA               GGCAAG AGA CGCGCC               AGCAGACGACCTGCA  65 48
D3880_RS20680 4551534 .. 4551554 - -18.3  -3.92659   TCCCTAAAATGCAAA            CGCGCAGGC CGG GCCTGCGCG            TCGAGTCTTGAAGCG 100 53
D3880_RS20675 NONE
D3880_RS20670 4549523 .. 4549550 -  -9.2  -2.58714   GCTTACAGCAATGTA        GGGTGGATGTCGC GCA GC-ACATCCACCG        GCCTTTTGGGGTGGC  56 295
D3880_RS20645 4544285 .. 4544303 -  -5.2  -4.08216   CTATCGGGTGGAAAA             GAGCTTCT GGC AGACGCCC             TTCCTCGAACCGGCG  64 514
D3880_RS20595 4538172 .. 4538188 -  -3.6  -2.84527   CAAGTTTGAGCAAAC              GCCCAC GGATT GCAGGC              TTGAGGGCAAGGTAG  42 84
D3880_RS20590 NONE
D3880_RS20585 4536837 .. 4536869 -   -17  -3.60792   TCTGCAAGCCTGAAA      CGCAAACGCCCGGC GCTAG GCCGGGCGTTCTCG      CTCCTGAAGCACTCA 100 38
        rpmE NONE
D3880_RS20525 NONE
D3880_RS20520 4521339 .. 4521366 -  -4.8  -2.61264   CTGCTGACCCACAAG        GCAGGATTGTCC GACA AGTCAATCCTTC         TAATGAACTACTTTC  43 25
D3880_RS20515 4519956 .. 4519973 - -14.1  -5.06816   AGCGCCCAATAAAAA             GCCCCGC ATCG GCGGGGC              TTTTTATTACATCTC 100 46
D3880_RS20505 NONE
D3880_RS20500 NONE
        pilO NONE
        pilP NONE
D3880_RS20485 NONE
        aroK 4511856 .. 4511870 -  -6.4  -2.61831   CCCACGGTAAAAAGG               GCACTA GGA TAGCGC               AATTCCGTCTCCGCT  49 41
        aroB 4510742 .. 4510755 -  -4.5  -3.59315   TCAATTAGTCTTAAA               GCTGG TCCA CCAAC                GCACGGTAATCCGCA  54 7
D3880_RS20470 4509036 .. 4509063 - -13.6  -3.38782   GATGAAAGGACAATA        CCATGCGGTC-AT GCT ATCGACCGCATGG        TCATCCTTGCCTAGC  81 53
        gltB NONE
D3880_RS20460 4502893 .. 4502912 -   -15  -4.28432   AAGCCCAATGCAAAA            GGCACGGC GAGT GCCGTGCC             TTTTGTCCGTCGCGA 100 63
        hemE 4501668 .. 4501685 - -14.1  -4.34402   CGCGCCATAGCAAAA             GGGCCGC TAAT GCGGCCC              TTTTGCTTCGTTCAG 100 37
D3880_RS20335 4480790 .. 4480805 - -11.8  -5.24129   GCCCTGCACAAAAAA              GGCGCC GAAT GGCGCC               CTCGATCTCAACGAC 100 45
        rlmJ 4466915 .. 4466932 -  -4.7  -5.29782   CAGATCCATAAAAAA             GCCCGGC ATCG ACCGGGG              CTTTTTTCACTCTTC  89 32
        glnE 4455910 .. 4455921 -  -5.8  -3.28712   CGGGCTGCGCCACAA                TGGG CCAA CCCA                 GCCGGTCAATTCTTG  52 49
        ilvE 4454744 .. 4454773 - -10.7  -3.53444   TCACGGCTCCGGAAA       TGATCAGGGAGGC TTAC GCCTCCCCAGTCA        CTGCCTTATTTATCT  70 146
        waaF NONE
        waaC NONE
D3880_RS20240 NONE
        rfaP NONE
D3880_RS20230 4450008 .. 4450021 -  -3.8  -3.72576   TCGGCGGCGATGAAA               TCGG TCATTC CCGA                CCCTCGAAAAAGCCC  54 16
D3880_RS20225 NONE
D3880_RS20220 NONE
D3880_RS20215 NONE
D3880_RS20210 NONE
D3880_RS20205 NONE
D3880_RS20200 4442640 .. 4442650 -  -4.6  -3.73042   CTCTGGATGAAAACA                 GCCG CAG CAGC                 GAAATCGAGCGTTTC  55 491
        msbA NONE
        hldE NONE
D3880_RS20175 4436998 .. 4437008 -  -3.2  -3.15078   CACATGGGATGAAGA                 TGCC CAG AGCA                 TGCGCGCGACAGTCA  45 103
D3880_RS20170 4435605 .. 4435629 -  -2.2  -3.88583   GAAACGGGTGATAAA         GCGCAGTTTAC GAAT GTAAA-TGAGC          ATTTTGAGCCCGCTT  54 82
D3880_RS20165 4434178 .. 4434188 -  -2.4  -5.86061   CGCCAGGAAAAAAAA                 GCCC CGC GCGC                 GCAGGATTTAAACGC 100 184
D3880_RS20140 NONE
        waaA 4428505 .. 4428522 - -14.1  -4.83615   GACGGCCCATAAAAA             GCCCCGC ATCG GCGGGGC              TTTTTTATGCGCCGG 100 42
        thiC 4424604 .. 4424620 -  -6.5  -3.09933   GTTGAACGCAGTGAA              GCCCAAC GGT GCTGAGC              CAGCGCGTAGGATGG  52 118
        cytX 4422886 .. 4422903 -  -4.8  -4.70879   CGCAAACTGGAAAAA             GCCCTG ACCTTG CAGGAC              ATGCTGCTGCCCGGC  75 380
D3880_RS20110 NONE
D3880_RS20105 4420916 .. 4420932 -  -3.5  -3.39018   TCAGCAGCGGAAACA              GGCGAGC TCG GCACGGC              AACGGCTCCAGATCG  47 258
        cpdA NONE
D3880_RS20095 NONE
        parE 4417543 .. 4417559 -  -3.5  -3.55563   AGCCGACGGGTCAAA              CCAGGAC CTC GGCCAGG              TTGCCCTTGGATTCC  49 4
D3880_RS20085 NONE
D3880_RS20080 NONE
        parC 4413666 .. 4413680 - -11.4  -2.65942   GCCACAGTCAAACAG               GCGCCA AGC TGGCGC               GTCTTGCCGGGGGTG  64 101
D3880_RS20070 4412879 .. 4412895 - -13.7  -5.28778   AGCAGGCATAAAAAA              GCCCGCA ATA TGCGGGC              TTTTCCAAGGACTGC 100 43
        serB 4409873 .. 4409888 - -11.8  -5.45652   ACCCTTAATAAAAAA              GCCGCC CATG GGCGGC               CTTTTCATTGGGGGC 100 51
D3880_RS20030 NONE
D3880_RS20025 4401821 .. 4401831 -  -2.4  -3.05596   TACCTGCTGAGCTAA                 TCCG GCG CGGG                 GTTGCTGGGCTGCAA  41 92
D3880_RS20020 4401688 .. 4401703 -  -7.5   -5.4505   GCGGGCAAGAAAAAA              CCGGC ACGCGG GCCGG               TTTTCTTGGGTTTCC  95 73
D3880_RS20010 4400060 .. 4400078 -  -3.1  -4.38712   CCGACCTCCACAAAA             CTGGTCA TTTGT TGAACAG             ATATGCGCGCGCTGG  65 67
D3880_RS20005 4399303 .. 4399321 -  -4.5  -3.25475   TGGAAGACAGCAAGA             TCGCGCT GACCG AGAGCGA             CAGCCGGCGCATCGA  49 481
        cbpA NONE
D3880_RS19990 4396765 .. 4396783 - -10.2  -3.04461   TAGCGATGCCCAACA             TGCAGGCC GCG GGCCTGCC             GCACGGGACTTGATC  64 112
D3880_RS19865 NONE
D3880_RS19860 4365198 .. 4365218 -  -2.4  -3.20382   TGCGATACCCATCAA            TGCGCGGC GATGG GCATCGCA            GGCTCAACCCATCCT  43 39
D3880_RS19855 4364462 .. 4364475 -  -3.7  -3.89354   GTCGGAAATGAATAA               GCGCC GCCC GGCTC                ATGCAGGTTGGCGGG  56 104
        speA 4362482 .. 4362501 - -11.4  -5.55769   CGGGACAACAAAAAA            GCCCGCTC ACGG AAGCGGGC             TTTTTCATTCCCGAG 100 45
D3880_RS19835 4354827 .. 4354859 -  -4.8  -3.62572   CACCATCAGGTGAAA     GTCACCCCTCTCCCG TTCA CGGGAGACGACTG-C      ATGGATGCAGGAGAT  54 94
D3880_RS19830 4354237 .. 4354260 -  -2.2  -3.53012   GTCGTCTCCCGTAAA          CGGGCGAGGG GTGA CTATCGACCG           ACCTTCGGTGTCGGC  47 150
D3880_RS19820 4353183 .. 4353236 -  -5.1  -3.17229   AGGCCACCAGCAACA GCGGCG-CGAGCAGCCAGGGCCGGC GGATCA GCCGGCGCAGAC-GCTTGCCAACGC GCTCAGCCAAGTGCC  48 41
        pbpC 4350729 .. 4350742 -  -6.7  -3.42684   AAATCCAGGCAAATA               GGTAC AACC GTACC                AGCCACGCCTCAGAG  58 178
D3880_RS19810 4348352 .. 4348362 -  -8.2  -3.14468   CGCCAGTACATTCAA                 GCCG GAG CGGC                 GCGTCGATGCCCCCG  57 326
D3880_RS19805 4346455 .. 4346477 - -10.4  -3.12847   AACGCGGAGAGTGAA           CGTGGCGGCG ACA CGCCGCAGCG           ACAGCCAGAGCCCGG  65 78
        fdnG NONE
        fdxH NONE
D3880_RS19770 4339009 .. 4339021 -  -5.5  -2.57132   CCCCGGCTCGAGAAT                GATGC CTG GCACC                CAGGACTCCTTAGCC  46 396
        fdhE 4337953 .. 4337965 -  -3.3  -3.18264   GCGGTCATGCACGAA                CCTCG CGA CGATG                AACCTTCTTCAGTGT  45 145
        selA NONE
        selB 4334489 .. 4334503 -  -3.5  -3.34398   GCGTTCCCCCAAAGA              CCTGCC GACC GGC-GG               CTAATGATGCGGCGG  47 163
D3880_RS19745 4333265 .. 4333288 -  -2.2  -4.61231   CTACATCGCGAAAAA          GTCCGGCCAC TCAC GGGGCAGCAC           CCTCGACCTGACCCT  70 308
D3880_RS19695 4326394 .. 4326424 - -16.8  -3.54307   AAGACGTCGCCGAAA       CCGTGGCCTGGCTG GCC CAGCCAGGCTCCGG       GGCGATGACCGGCCA  89 246
D3880_RS19685 4323419 .. 4323443 - -11.4  -6.06723   CGGCGCAAAAAAAAA         GCGGCCCCACC AACC GGC-GGGCCGC          CCAAATTCACGGAGT 100 88
D3880_RS19680 NONE
        guaD 4320374 .. 4320387 -  -3.7  -3.78934   CGGCGGCTACAAGAA               GTCCG GCAT CGGCC                GCGAAACCCACAAGA  57 236
D3880_RS19625 4305635 .. 4305655 -  -8.2  -3.85698   CCCCTCTCCCATAAA            TGGGCGTG GGCTT CGCGCCCA            TTTGTAGCCTGTAGG  69 111
         mpl NONE
        ubiX NONE
D3880_RS19610 4302975 .. 4302990 -  -8.2  -3.18768   GCGAAGACGAATAGA              CCGGCA CCGG CGCCGG               CTCAGTAACCGCCAG  57 27
D3880_RS19585 NONE
D3880_RS19580 4298238 .. 4298252 -  -2.8  -3.06302   ACCAGTCTTATCCAA               GCTTAT ACG ATCAGC               GCCACCGCCAGCGGC  41 13
D3880_RS19575 4297458 .. 4297475 -  -5.5  -3.15544   CGCTACGCCTATTAA             CG-GCGGC CCG GCCGCTCA             GAACCTGTCTACGAT  50 166
D3880_RS19560 4294101 .. 4294155 -   -10  -3.92522   CTGCAACTGGACAAA CGCCAGGAGCCGC-GCCGGCCGCCGCCG CAA CGGCG-CGCCCAGCTGCGACA--TGGCG AAGGTGGCACCTGGC  77 348
D3880_RS19550 NONE
        nadD NONE
        rsfS NONE
        rlmH NONE
        mrdA NONE
        rodA NONE
        mltB NONE
D3880_RS19515 4284998 .. 4285017 -  -3.4  -4.35524   TTCTCAAATGTAAAA            GCGTGCCC AGGC GGGCAAGG             TCGGGTCAGCCGTCA  65 38
D3880_RS19510 NONE
D3880_RS19505 4283443 .. 4283453 -  -6.8  -3.72695   AGGCCGCTCATCAAA                 GCAC CAT GTGC                 ACGCGGCCGGTGGCG  63 10
        lipB NONE
        lipA 4281774 .. 4281793 - -10.6  -5.07486   GATCGGCAATAAAAA            GGGCGGCC CGCG GGTCGCCC             TTTTTTATTGCCGCC 100 46
D3880_RS19465 4274977 .. 4275011 - -10.6  -3.19255   TGAAGATATAGCGAA     TCGGCATCGGACACCC CCT GAGTGTCCGCAGCCTA     GCGGGGTTTGCTCGC  65 23
D3880_RS19460 4274174 .. 4274189 -  -5.4  -2.89881   GATCCACCTGACACA              CCCATC GGTG GATGGA               AAAAACGCCATCCAC  48 58
D3880_RS19430 4267902 .. 4267915 -  -2.3  -3.61894   AATGGCGCCGAAGAA               GCGAT GGAC AGCGC                CGACCTGGTGGCCGC  48 245
D3880_RS19405 4261275 .. 4261316 - -19.1  -3.91144   GCGATAGGCCATAAA CTGAATCCTGATTCACT CTTTGCCT AGTGAATCAGGATTCAG  ATCTTGCAGAAAGCG 100 382
D3880_RS19400 NONE
D3880_RS19395 4258758 .. 4258786 -  -6.5  -4.42386   GCTTCACGCAGAAAA        GCCATGGCCGCCC AGC GAGCGGGCTCAGC        AAGTAGTGAGCCCGC  74 211
         amn 4257115 .. 4257130 -    -6  -3.28712   TGTTTGCCCCGACAA              CCTGGC CTGG GCCGGG               CACCGTTGTTGGGCT  52 123
D3880_RS19380 4255251 .. 4255277 -  -4.3  -2.97676   ACCCAGTGAAATAAC        CGGCCTAGCGCG AAGG CGCGATCGG-CG         TTGGCCGCTCAGTCG  45 34
D3880_RS19375 4254447 .. 4254457 -  -3.2  -2.72144   TTACGGGCTGTAAAT                 GAGC AGT ACTC                 GTTTCACTCGCCCTG  41 133
D3880_RS19370 4252498 .. 4252511 -  -8.1  -4.08692   CAACTGCCTGGAAAA               CCTGC CGTT GCAGG                CGCCGGTGCTGCTCT  69 486
        hrpB 4247218 .. 4247267 -  -4.1  -2.57132   GCGCGGCTCTACAAT GGCTTGATCGATGGCAGCGTCC AGGTATG GGCCGGCGCCCCCGG-CAAGCC GGCGCTGCAGGGTCA  40 474
D3880_RS19330 NONE
D3880_RS19325 4244522 .. 4244542 -  -5.4   -3.1505   AGTACGCTGGAGTAA           GGCCTGGCC CGCA GGC-AAGCC            GGGCTACCTGCCGCT  50 29
D3880_RS19310 4242388 .. 4242433 - -10.4  -3.12895   GCCTGCAGCAACAGA GCCG-GG-GCCGCGTGGTGCCGG ACT CCTTCACC-CACGGCACCTCGGC ACAGCGCGTGCGTTG  62 221
D3880_RS19295 4239818 .. 4239872 -  -7.9  -3.25223   CACCGAGATCAGCAA GACCTCGGTCAACGCCGC-GCTGGCCA ACC TGGCCGACAACGGCGTCAAC-AACGTC AGCCTGGTGCGTCTG  56 352
D3880_RS19280 4236883 .. 4236909 -  -7.8  -2.61239   CATACATGGGAGAAG         GGGCTGTCCGTG CGA CGCGGAACGCCC         GGATGCACGCCCTCC  52 58
D3880_RS19270 NONE
D3880_RS19265 4231848 .. 4231861 -  -3.1  -2.57344   CAGGCTGGCGAGAAG               GAATG CACG CATCC                TCAACCCTCCTTGAC  40 26
D3880_RS19260 NONE
D3880_RS19255 4229150 .. 4229204 -  -4.2  -4.15222   ATGCTGGTGAATAAA CCGGCCC--TCTCCCCCGGCCCCTCTC CCGT GA-ACGGGCGAGGGGTGACCGGGCCTG AATCTACTATAGCCC  65 481
D3880_RS19250 4228460 .. 4228480 -  -9.7  -3.27029   GTGGATCAATCAATA            GGGAAAGCG TAG CGCTTTGCC            GAGCGCCTGCCGCTG  61 99
D3880_RS19245 NONE
        cydB NONE
D3880_RS19235 4225229 .. 4225257 -  -7.4  -3.28712   GTCGGCGCGCGAGAA       CTGGCGCGCGGCGC TGG GCGA-GCGCG-CAG       TGGAGATCCGCGCCG  56 462
D3880_RS19225 4223531 .. 4223562 -   -21  -3.58343   GGCAGGACCTGGAAA      GGCAAAACAGCGCC CTCG GGCGCCGTTTTGCC       TTGACTCACCAGTAG 100 31
D3880_RS19215 4222657 .. 4222673 -  -6.5  -3.42147   CTCAATCAATAGCAA              GCGAACT ATT AGCCCGC              CTGTTGCAACAGCTT  58 17
D3880_RS19210 4222284 .. 4222298 -  -2.8  -2.75064   TTGGCCATGGAACCA               CTCCGT CAG ACGAAA               GCGCGCATCATACCA  39 16
        radA 4220869 .. 4220904 - -10.4  -3.72695   ACCTCGGCGATCAAA    CCTTGCTGGAGCGCGAC CTC GCAGCGCT-CAGCGAGG    AATAGCGGCGTTATT  76 36
D3880_RS19190 4219384 .. 4219399 - -11.8  -5.28176   CGCAGGCATAAAAAA              GCCGGG CGAG CCCGGC               TTGGGGTATGCCTGC 100 48
D3880_RS19185 NONE
D3880_RS19180 4216901 .. 4216924 - -15.3  -3.42861   AACCTACAACAGCAA          CGCGCCACG ACGAGG CGTGGCGCG           TGAGTTACAAACAAC  90 46
        yjiA 4215618 .. 4215636 - -13.1   -5.0916   TGCGCAATAGAAAAA             GCCCGGC CAAGT GCCGGGC             TTTTTTGTTTCTCAC 100 152
        ettA 4207985 .. 4208002 - -12.7  -5.47218   CGCCAGCCAAAAAAA             CGGAGCC CGCA GGCTCCG              TTTTTGATTCCACTG 100 45
        gdhA 4206443 .. 4206460 - -14.1  -3.75332   ACTTCGGAACGCAAA             CGGGGCC CGCA GGCCCCG              TAGCGTAAAGCGGCC  91 61
D3880_RS19140 4203564 .. 4203585 -  -5.7  -3.62597   CGGACGGCGGAATAA           CCAGCGCAG GCCT CAGCGCCAG            GCGCTATTTCATCAG  57 29
D3880_RS19135 4200784 .. 4200811 -  -6.2  -3.14693   CTGACGACTAAGACA        GAGGCTGCGCGGC ATG GCGGCG-ACCCTC        GTGAAGTCCGGCCTC  50 219
D3880_RS19130 4200449 .. 4200469 -  -5.3  -2.94912   GGGTCAAGCGACAGA            CCCCGTG CTCAGGT CTCGGGG            TTGAACTGGTAATCG  48 13
D3880_RS19125 4199724 .. 4199762 - -26.9  -3.53012   CGCGCCGGCCTGAAA  CGCCAACGCCCGGAGCCG TTGC CGG-TCCGGGCGTTGGCG   ATGCAGCCGCGACAC 100 41
D3880_RS19120 4198989 .. 4199016 - -16.4  -5.06414   GCCGCTCAAGAAAAA        GGCCGAAAACCC GTGC AGGTTTTCGGCC         TTGTCATCCAGCCGA 100 50
        rplU 4197067 .. 4197091 -  -4.9  -3.62054   ACTCCAAATAAGGAA          CGAGGCCGAAT CGA ATCAGGCCTGG          ATACCGGTAATTTTG  54 16
        rpmA 4196747 .. 4196766 - -11.4  -5.72622   CTCAGAAACAAAAAA            GCCCCGTC GCGA GACAGGGC             TTTTCCAGCAACATC 100 45
        cgtA NONE
        proB NONE
D3880_RS19085 4193695 .. 4193709 - -12.8  -5.24531   AGCTTGCATAAAAAA               CCGGCC TTT GGCCGG               TTTTTTATTGCCTGC 100 57
        murJ 4191587 .. 4191607 -  -6.8  -3.21924   CGACGCTCGACAACA           GGCGCCAGC GTCC GCC-GCGCC            GGGCAACACCATGCC  54 68
        ribF NONE
        ileS NONE
        lspA NONE
D3880_RS19055 4186769 .. 4186795 -  -8.7  -2.72344   GTTTACGCTGAATCA        CGGAAGCGGAGC CCTA GCCCC-CTCCCG         GAGGGAGAGGGGATA  57 47
        ispH 4185610 .. 4185620 -  -8.2  -3.91032   CAACCATCCTACAAA                 GCGG CGA CCGC                 GCTGATTGAGCAGTG  69 177
D3880_RS19040 4184039 .. 4184052 -  -3.1  -2.90061   ACATGGACATAATCA               CCACT TCGC AGTAG                GGGTCTTGACCCCTT  42 9
        pilV NONE
D3880_RS19030 NONE
D3880_RS19025 4181774 .. 4181793 -  -3.5  -3.61398   GTGGTCTCCTAACAA            CGCGTCC GGCTAG GGACACA             CACTGTTCTTTTGTG  51 15
D3880_RS19020 NONE
D3880_RS19015 4177871 .. 4177890 - -16.4  -5.00884   AGCTTCTCCAAAAAA            CGGGCCGC AAAG GCGGCCCG             TTATACGTCATTAAC 100 261
D3880_RS19005 NONE
        pilV NONE
D3880_RS18995 NONE
D3880_RS18990 NONE
D3880_RS18985 NONE
D3880_RS18980 4170709 .. 4170727 - -17.4  -3.27704   ACCCTCCAAATGCAA             CGGGCCGC TAA GCGGCCCG             TGATACGTCGTCGGC  93 52
        thiO 4169129 .. 4169147 -  -9.5  -3.53091   AGCGCCTGGCCGAAA             GCAGCGG CCTGC CCGCCGC             CCAACTCAACCCCGA  64 478
D3880_RS18950 4164483 .. 4164501 -   -16  -5.31456   CGAACGCATAAAAAA             GGGAGGCC CAC GGCCTCCC             TTTTCATTTGTGGAT 100 53
        rluD NONE
        pgeF NONE
        clpB 4158821 .. 4158877 - -21.2  -3.36073   GATACTGCTCAAACA CCTGTGAGCAGGCAGAAAAAAGCCCCGC CAT GCGGGGCTTTTTTCTGCCTGCA-A-AGC TCAGACGAAGACGAT 100 26
D3880_RS18915 NONE
D3880_RS18910 4155692 .. 4155708 -  -5.1  -3.10409   TACCAACTGAGCTAA              CGACC CAAAAAT GGTCG              GGGTAGGGGGATTCG  46 20
D3880_RS18905 4155586 .. 4155613 -   -17  -4.41353   GCAGACATAGCAAAA        CCCCCTCGAGGC TTGC GCCTGGAGGGGG         TTGCTGAATGGTGGG 100 34
D3880_RS18880 NONE
D3880_RS18875 4151250 .. 4151267 -  -3.4  -3.78775   TCCCCCATCATCAAA             TGC-CCG ACCTG CGGCGCA             CCCGTCGAATTTGGC  56 344
D3880_RS18840 NONE
D3880_RS18835 NONE
D3880_RS18830 4142566 .. 4142584 - -11.6  -3.83437   GGAGGAACTAAAAGA             GGCGCTGG AGG CCGGCGCC             GACATCGTCATGCTC  79 454
D3880_RS18820 4139170 .. 4139202 - -11.3  -4.57341   AACTGCCCCCAAAAA     CGACAACGCCCGGC GGGTTG GCCGGGCGCTG-CA      TGGGCGGGCTGGGAC  95 41
        ampD NONE
        ampE 4137159 .. 4137184 -  -9.7  -3.01712   GCGGCCTGTCGAACA         TCGC-CGCGCTG TAC CAGCGCGTGCCA         TTGCTGCTGCCACAC  57 225
D3880_RS18800 4134127 .. 4134158 - -12.2  -4.26903   CCCACCCTACGAAAA      CGGCAAGGCCCGCC ATTG GGCCGGCCTTGTCA       CTACAGCTCCAGGGG  95 42
D3880_RS18785 4129973 .. 4129998 - -19.1  -2.83822   CCTAGGCCATAACGA         CGAAACCCCGG CAAG CCGGGGTTTCG          TTAGCTGACACAAGG  88 42
D3880_RS18780 4127482 .. 4127502 - -15.4  -3.63627   TCCTGATACGCCAAA            GCCCCGCC GAATG GGCGGGGC            TTTGATTGCAACGGT  93 49
D3880_RS18775 4126426 .. 4126458 - -12.7  -2.71101   GGTCGAAATAACGCA     TCGGCCC-GCGCCG CTCGCC CGGCGCTGGGCTGA      AGAACACCCGTGCAG  69 340
D3880_RS18750 4121926 .. 4121950 - -17.9  -5.56112   ACAAAAATGAAAAAA          CCCGCCAGACA TGC TGCCTGGCGGG          GCTTGTGTATCAACT 100 45
D3880_RS18745 4119304 .. 4119327 -  -2.2  -4.07568   GCTTTTGGTGGAAAA          CGCTGCGCGG TTTT CCACCCTACG           GCGTACGGAAACCAC  57 120
D3880_RS18740 NONE
        pxpB NONE
D3880_RS18730 4116760 .. 4116782 - -13.4  -2.61264   CGCCTGACGGACAAC           GCCCTCTTCC TCC GGGAGAGGGC           TGGGGTGAGGGGTGA  72 54
D3880_RS18690 NONE
D3880_RS18685 4105826 .. 4105844 -  -6.6   -3.5774   ATGCAATCCGGGAAA             CCGGCAGC TCC GCTCCCGA             ATCTCAGCGGCGTAC  60 29
D3880_RS18670 4101768 .. 4101796 -  -5.4  -4.57569   CCATCCCCCCAAAAA       GCGGTGGATGA AAAAAGCA TCATCCACC-C        TACGACTAACGCGCG  74 387
D3880_RS18665 4100619 .. 4100642 - -10.3  -3.24747   CGCGCAGACGAGGAA          CTGGCCGGCG AATGA CGC-GGCCAG          ATCGGGACGCGGGAG  65 41
D3880_RS18650 4096075 .. 4096091 -  -5.8    -5.055   TCAAGCGGTAAAAAA              TGGCCA TGCAC CGGCCA              AGTGTCGAGCACAGC  85 287
D3880_RS18645 4094579 .. 4094629 -  -6.7   -3.8579   AGCGAACAAGCGAAA GCCGGCGAACAAGTGCGCCGCCAA GTCA TGGGCGACGC-CTTCGTCGACCGC GCCCTGGACAACGCC  64 441
        mreB 4089463 .. 4089484 - -18.7   -2.6927   ACCCCTGACACACGA           CGGGCCCGC CGAG GCGGGCCCG            AGAGGCTGCAGCATG  86 68
        mreC NONE
        mreD NONE
D3880_RS18600 NONE
         rng 4085706 .. 4085722 -  -9.3  -3.16564   GGGCCATGTCAGCAA              GCGCCCG GCG CGGGCTC              AGAGCAGCACGACAT  61 24
D3880_RS18590 4081832 .. 4081845 -  -2.3  -3.05597   CGCACTCCCGAAAAG               GCCTG CCTG CATGC                TAACCCATCGCGTAC  41 50
D3880_RS18585 4080976 .. 4080988 -  -4.7  -3.64609   CATAACTACTCCAAA                CCTGG CAG CCGGG                GCTCGGCCGCTGGAA  54 3
        tldD 4079019 .. 4079055 -  -6.3  -3.53224   GACCTGCTCGCCAAA    CTGCCACTGACCGACGC CCT GCGTCGCGCCCTGGCCG    AAGCGCCGAAGCACA  56 476
        pmbA 4077393 .. 4077451 - -24.9  -2.51173   ACGAAGGCGAGTAAG CGCAGCCAATGAAAAAGGGGCTGC-CAGC CTA GCTGTGCAGCCCCTTTTTCAT-GGCGCCG GCTTAGCTGCCGGCC 100 28
D3880_RS18515 NONE
        mlaE NONE
        mlaD NONE
D3880_RS18500 NONE
D3880_RS18495 4067031 .. 4067076 - -10.3  -5.39721   CCATGATACAAAAAA GCCCCCCGCCTGCGAACCCCAT GCT ATGCGGG-CACTGACGGAGGGC TGGGTGTCTCGCTTC 100 39
D3880_RS18490 NONE
        murA 4065368 .. 4065396 -  -2.2  -3.04415   CAGCATGAAACGAGA        TGTCCTTAGCGG CGTGC CCGCCCCGGCCA        ACCCATGGTCGGCCG  41 60
        hisG 4064649 .. 4064663 -  -9.2  -3.24747   CCGCTAGACTAGCAA               GCCCAC CGT GCGGGC               ACCCGAGAAAATTGG  61 85
        hisD 4063230 .. 4063284 - -12.1  -2.62515   AATGCGTTGACATCA TGGGGCCGCGCATCG-ATGGGTAGCGC TGC GCGCAACCCATCCTACG-GCGGCCGCT GTTTCAATTTTTGAT  68 29
        hisC 4062099 .. 4062128 - -17.9  -3.00525   GCCCCTGAAACCACA       GAGCCGGACCCAC TTGC ACGGGTCCGGCTC        TTTTTTTCACGCGAC  89 44
D3880_RS18460 4059851 .. 4059863 -  -9.1  -3.19157   GACCAACGGGAGTAA                CAGCC GAA GGCTG                GCCCAAAGGGCGAGC  61 205
        cysD NONE
        cysN 4056636 .. 4056653 - -14.1  -5.06414   TGGCCGCAATAAAAA             GCCCCGC CTAG GCGGGGC              TTTTTATTGGGTGAC 100 185
D3880_RS18440 4055429 .. 4055442 -  -5.9  -2.84687   GCAATCAGGATCAGA               GGCGC GGCA GCACC                AGCTCTTTCAGATCG  48 7
D3880_RS18435 4053910 .. 4053937 - -20.6   -4.7254   ACTGGGCATGAAAAA        CGGGGCCGTCAC TTTA GCGACGGCCCCG         TGGCTTGGCAATTGG 100 135
D3880_RS18430 4052755 .. 4052772 - -12.7   -4.3208   CGCCAGAACGCAAAA             GGCTGCC CGTG GGCAGCC              TTTTTTGTGTGCTTC 100 45
D3880_RS18415 4049374 .. 4049391 - -14.1  -5.63103   CCTGAACGAAAAAAA             GCCCGGC ACAA GCCGGGC              TTTTTCTTGCAGCGC 100 44
        rplM NONE
        rpsI 4047209 .. 4047235 - -19.6  -5.61596   ATGCGCATAAAAAAA         CGCCCGATTTCT GCA AGAAATCGGGCG         TTTTAGAATACAGAA 100 46
        petA NONE
D3880_RS18390 NONE
D3880_RS18385 4044368 .. 4044394 -   -23  -4.98255   TCGGAAGCAGAAAAA         CGCGCGCGCCCA GAG CGGGCGCGCGCG         TCGACAGCGGAACAG 100 48
D3880_RS18380 4043698 .. 4043708 -  -2.4   -2.8085   GGAAGTCATCGAAAG                 CTCC TTC GGCG                 TTAGCGCATGTCGCG  39 26
D3880_RS18375 4043249 .. 4043267 - -14.6  -5.55769   TCGCAGAACAAAAAA             GGCGATCC ATC GGATCGCC             TTTTTTGTTTTCACT 100 36
        rsmI NONE
        rnpB 4038159 .. 4038172 -  -5.3  -3.11732   GCGAAATTCAGCTAA               TTCAG GGGG CTGAA                TTTCAAACTTAAAGT  49 114
        mraZ NONE
        rsmH NONE
        ftsL NONE
D3880_RS18325 NONE
D3880_RS18320 NONE
D3880_RS18315 NONE
        mraY NONE
        murD NONE
        ftsW NONE
        murG NONE
        murC NONE
D3880_RS18285 NONE
D3880_RS18280 NONE
        ftsA NONE
        ftsZ 4021077 .. 4021104 -  -3.2  -3.61894   AATTGTTTTCAACAA        TGGCCGGCGATG ATAG CAGAACCGGCCT         TTGCTGAACACTAAT  51 67
        lpxC 4020073 .. 4020090 - -12.7  -5.24129   CTCCGCCATAAAAAA             GGCCACC CTAG GGTGGCC              TCGTAAATACAGCTA 100 57
        secA 4016491 .. 4016519 - -21.7  -4.66609   CAGTCGAGGCAAAAA        CGCCGCGAACGGC TGG GCCGGTCGCGGCG        CGATTACAGGCGAGT 100 46
        argJ 4015152 .. 4015167 - -11.8  -5.00616   CTCGGGGTTAAAAAA              GGGCGC CGTA GCGCCC               TCGATTATTAACCTA 100 68
D3880_RS18245 NONE
D3880_RS18240 4013174 .. 4013187 -  -2.3  -2.72144   GCAGCGCCTGGAAAT               CGCCA TCGA TGGCT                GGAATGCGGAAGTCG  38 372
D3880_RS18215 NONE
D3880_RS18210 4007032 .. 4007050 - -14.6  -5.28778   AGCAGTCATAAAAAA             GCCGGACT CGA AGTCCGGC             TTTTCTTGAGCGCCT 100 46
D3880_RS18195 4003739 .. 4003756 - -12.7  -4.87291   CACCCCAACCAAAAA             GCCCTGC CTGC GCAGGGC              TTTTTGGTTTTACCA 100 35
D3880_RS18185 NONE
        fxsA 4001469 .. 4001483 -    -7  -2.71712   GGCTGGTTGGCAAAT               TCCGGC GTT GCCGGG               TGCGACCCGCAGAGC  50 144
D3880_RS18175 NONE
        groL 3999378 .. 3999396 - -13.1    -5.252   CACGCCCATAAAAAA             GCCCCGC ACAAG GCGGGGC             TTCCAGGTACAGCTC 100 55
D3880_RS18155 NONE
D3880_RS18150 3994317 .. 3994343 -  -6.5  -2.73903   AAAATTTCGTCAAAG        CCCGCGTTTCCG ATAA CGGCA-CGCGGA         ACAGCTACGGGGCTC  50 93
D3880_RS18145 NONE
D3880_RS18140 NONE
D3880_RS18135 3992560 .. 3992577 - -14.1   -4.8622   GCTCTGAACGAAAAA             GCCCCGC ATCT GCGGGGC              TTTTTTGTACTGGCG 100 50
D3880_RS18090 NONE
D3880_RS18085 3979171 .. 3979187 -  -2.2  -3.83502   TACCTGTATAGCAAA             CCGCTGC CGGC GC-GCGA              CCTGACCCTGTTCCT  54 237
D3880_RS18075 NONE
D3880_RS18070 3975758 .. 3975772 -  -9.2  -5.46657   CAGGCCAAGAAAAAA               CCCGCA TTC CGCGGG               TTTTTTCGTTTCTAC 100 37
D3880_RS18055 3972899 .. 3972935 -  -4.4  -4.08767   GTCATGGGGTGAAAA   GCG-CGGTGACCATCCCC TGG GGCGATG-TCGCCACCGC   CTACTACTCCACCGC  62 424
D3880_RS18045 3970921 .. 3970944 -  -2.2  -4.07568   CGGCTTGGTGGAAAA          CGCTGCGCGG TTTT CCACCCTACG           CATACCCAGGCATCA  57 38
D3880_RS18035 3969301 .. 3969318 - -14.1  -5.26875   CCTGGAATGAAAAAA             GCCCCGC AATT GCGGGGC              TTCTGCTTTCGTAGG 100 111
D3880_RS18015 3965682 .. 3965716 -  -5.1  -4.08546   ACGATTAATCAGAAA    GTAGGGTGGAAAACCGC GCA GCG-TTTCCCACCGT-C    GAAGCGGTGGATGTG  61 233
D3880_RS22805 3964625 .. 3964640 -  -2.5  -3.92522   CGGTAAGGGCATAAA              CCCAG TGAGTC CTAGG               GGGCAAGACGGGGCA  54 98
D3880_RS18010 3963651 .. 3963674 -  -6.6  -3.66178   CGGTTCAATGTGAAA          CCCACCGGCA CTCC TGCCAGGAGG           TGTCACCATGAAACG  60 443
D3880_RS17970 3959194 .. 3959213 -  -5.7  -3.35992   ACCCAGCCTAAGCAA            GCCC-TCG TCCAT CGATGGGC            TATGCGAACGCCGCC  52 25
D3880_RS17965 NONE
D3880_RS17960 3957309 .. 3957342 - -10.3  -3.59966   ATAGTCGAGATACAA     GGGTGGGTTA-GCTGC ACA GCGGCGTAACCCACCG     ACGGTGCCAGCATGG  73 161
D3880_RS17955 3955935 .. 3955947 - -10.5  -2.90723   TCAGGCGCAACGATA                GCCGC CCC GCGGC                ACCTTGCAACCCTGC  62 176
D3880_RS17950 NONE
D3880_RS17945 3954127 .. 3954141 -  -5.6  -3.14564   CGAGTCTGTTACCAA               CGCGGT ATA ACCGAG               CTCAGTAGTTTCTCA  50 52
D3880_RS17940 3953212 .. 3953226 -  -5.6  -3.01924   TAGGGGTGGGTAACA               GCCGGA TTA TTCGGC               CCCCGCGCCCAGGCC  49 128
D3880_RS17935 NONE
D3880_RS17930 3951983 .. 3951995 -  -5.5  -3.56836   AAAGGACTCTCCAAA                GCCTA GAC CAGGC                TCAGAGCCTGTTTAC  57 270
D3880_RS17925 3951523 .. 3951541 - -13.1  -4.08706   CGCGTACGACACAAA             GCCCGGC CTAGC GCCGGGC             TTTTTTATGGGCGTC  89 192
D3880_RS17915 NONE
D3880_RS17910 3947523 .. 3947536 -  -2.4  -2.82623   CGCGTTCGACAACCA               CATG CTCGCT CATG                ATGCTCCTCGGCGCC  39 44
D3880_RS17905 3946725 .. 3946743 -   -16  -4.18018   CCCCGCCATGCAAAA             GGCCGCTC GAT GAGCGGCC             TTTTTATGCACGAAC 100 44
D3880_RS17890 3943539 .. 3943550 -  -7.2  -2.52543   AGGCCGCTCAAGCCA                GCCG CGAC CGGC                 GGTTGGCCGGACCTG  48 41
D3880_RS17885 3943038 .. 3943060 -  -2.6  -3.63895   TCGAATGACGGGAAA           CCAGCCCC TATCCAC AGCGCTGG           ACAACTCGCTCGCGC  49 10
D3880_RS17880 3942478 .. 3942489 -  -2.2  -4.76041   CACAGCCAGTAAAAA                CTGGC CGC GCC-G                CGTAACCCATCATGG  72 150
        sbcB 3933868 .. 3933884 - -13.7   -5.5112   GCGAGCAATAAAAAA              CGCCAGC ACT GCTGGCG              TTTTTTATTGCTCGA 100 82
        purU 3932182 .. 3932211 - -17.9  -2.71731   CTCAGGGTCTAAGCA       GAGC-GGCGGGCCA GGC CGGCCCGCCCGCTC       AGGACGGTCAGTCGA  86 33
D3880_RS17825 3930874 .. 3930893 -  -7.8  -3.40371   GACGGCATGAACCAA            TCGGTCGC CACC GCCACCGA             AGAACAGACCTCGGT  59 280
D3880_RS17815 3927507 .. 3927545 - -20.3  -2.51642   AGAGCAGCCAGTAAT   CCGCGCGGGCTCCAGCC GGGGA AGCTGGAGCCCGCCCGA   GCGGCGCCACCTTAG  95 37
D3880_RS17780 NONE
D3880_RS17775 NONE
D3880_RS17770 3918133 .. 3918149 -  -3.5  -2.82623   TCCCCTTCATAATGA              TGGGCGC AGT GCGCCGC              GTTAATACTCAGTCA  41 38
D3880_RS17765 3917111 .. 3917154 - -10.2   -4.0641   TGTCAGGGATAGAAA CGGTAACGCCGGACG-GTGCT TGC AGCACACGTCCGGCGCGGTCA TTCACCAGCGGTATC  80 39
D3880_RS17760 3915319 .. 3915337 - -17.4  -4.41047   ACGCTGGAACCAAAA             CGCCGGGC ATT GCCCGGCG             TTTTGGTTTGCACCG 100 190
D3880_RS17750 NONE
D3880_RS17745 3910009 .. 3910026 - -12.7  -3.44051   TTCTGATCAGCACAA             CGCCCTG CATG CAGGGCG              TTGGCTTGGTTACAG  79 49
D3880_RS17740 3907229 .. 3907252 -  -5.2  -2.93708   CCCGCGCAAAAACAG          GCTCCGTCGC GGCC GTGACGAAAC           GTCAACAGACCCTAG  45 37
D3880_RS17730 NONE
D3880_RS17725 NONE
D3880_RS17720 3902475 .. 3902522 -  -8.5  -3.86194   AATCCTGTGTAGAAA GCCCCCTCACCCCAGCCATCTCCC GAC GGGAGAGGG--GCGGTGAGGAG-C AAGCCGATGGGCCGG  69 44
D3880_RS17715 3901242 .. 3901252 -  -2.4   -3.5944   AGGGAGATTCCGAAA                 CCAG GAA CAGG                 CGCTCAGACCGCACC  49 29
D3880_RS17710 3899917 .. 3899961 - -12.6   -3.6215   CTAATGGATTGGAAA CGTTGCGGCCGCGCGCAGCC TTGGG GGCAGCTCGCGGCCGGACAG ATTGAGGGAAATTAT  82 156
D3880_RS17705 3898539 .. 3898568 - -16.5  -5.44119   TGGAGCTCAAAAAAA       TCCGGCCATGCCC TTGC AAGCATGGCCGGA        TTTTTTATGCCGGCA 100 213
D3880_RS17695 NONE
D3880_RS17690 NONE
D3880_RS17685 NONE
D3880_RS17680 NONE
D3880_RS17675 3890488 .. 3890538 -  -5.4  -4.68593   GGCATCAGGTAAAAA GTT-CGGTAGT-CCGTGCGGCGCC GACTT GGCGCCGCACGGTAATGCATCAAC AGCCGTGGCTTAGAA  76 35
D3880_RS17670 3889256 .. 3889298 - -13.4  -2.61264   CGGCGGACGGATAAT CGGGG-TCGCCGG-CGGCCC GTCTG GGGCCGACCGGCGAGCGGCG CGCTTACAGGGTACG  72 29
D3880_RS17665 NONE
D3880_RS17660 NONE
D3880_RS17655 3885780 .. 3885805 - -16.1  -3.30124   CGTGATTCGGGAGAA         GGCGCGGCCAC CCGT GTGGCCGCGCG          AATGGCTTACTGGTC  89 32
D3880_RS17650 NONE
D3880_RS17645 NONE
D3880_RS17640 NONE
D3880_RS17635 NONE
D3880_RS17630 NONE
D3880_RS17625 3880309 .. 3880320 -  -7.2  -3.76492   CCGAACCCGATCAAA                GCGC CGCT GCGC                 TGCCGAGGAAGGCGG  63 9
D3880_RS17620 3878946 .. 3878961 - -11.8  -2.57136   GTACCAACCAGGAAC              CGGGCC TTGC GGCCCG               TTTGAAAGGGCGTTA  64 156
D3880_RS17615 3877287 .. 3877302 - -11.8    -5.252   TACTCCGAGAAAAAA              CCGGGC CGCG GCCCGG               CTACAAGAAAACGGG 100 49
D3880_RS17610 NONE
D3880_RS17605 3875531 .. 3875577 -   -21  -3.32844   GCGGCCAGCCGATAA GCGCGCAACAAAAAACCCGCTC AAT GAGCGGGTTTTTTGTGGGGCGG AGAAACTGATCAGAT 100 35
D3880_RS17550 NONE
D3880_RS17545 3866393 .. 3866403 -  -8.2  -2.62184   TTCGGGGCGAGAGGA                 GCCG GAA CGGC                 TTAGCCCTCGACCGC  52 26
D3880_RS17535 3860357 .. 3860373 -  -3.6  -4.69464   AAAACAGGGGAAAAA              CTGCCG GCTCG CGGCAC              AGCCCCCCACTTCTG  70 259
D3880_RS17530 3859617 .. 3859631 -  -5.6  -3.14564   CCAGGCCCCGAGCAA               CAGCAG ACG CGGCTG               TCACGGCAGGTGTTC  50 26
D3880_RS17520 3857959 .. 3857972 -  -3.1  -3.26449   TCTGACACAACGCAA               TC-GCC ACT GGCAGA               TCGGCATTCCAGTGC  46 466
D3880_RS17485 3850353 .. 3850380 - -13.4  -3.24166   AGGCAAGCAAGCGAA        GGCCCTGGCGCA GGGG CACGCCAGAGCC         GCTAAGAACCTGTTT  78 187
D3880_RS17475 3848605 .. 3848620 -  -6.8  -2.77283   GGAGGAACAAACTGA              CTCGGC TCGC GCCGAA               AGCCATCAAATCAAT  50 47
D3880_RS17470 3846788 .. 3846800 -  -6.9  -3.36919   AGAAAACCCGGAGAA                CAGCG GCG CGCCG                ACCCTGGCGCCTCGG  56 186
D3880_RS17465 3845374 .. 3845401 -  -6.8  -2.78816   TTAGCTGTGATCAGA        GGGTTCCCGGCC CGCA GGCCGGGGATTC         GGGTGCCAGGCCGAC  50 69
D3880_RS17460 NONE
D3880_RS17455 NONE
D3880_RS17450 NONE
D3880_RS17445 3840083 .. 3840093 -  -5.4  -2.75081   GATGCGGAAAATGCA                 GTCA TGG TGAC                 GGACTCGGCAAACGG  46 42
D3880_RS17440 3838138 .. 3838153 -    -6   -3.1505   ATCACCGCCGAGGAA              GCCTGG ATCT CCGGGC               TGGTCAGCGAAGTGG  51 346
D3880_RS17430 3836623 .. 3836645 -  -9.1  -3.28712   CCTGCGTGTTGAGAA          CGGCGC-CCG AATC CGGCACGCCG           CCATGGGTCGATCAG  63 37
D3880_RS17425 NONE
D3880_RS17420 NONE
D3880_RS17415 NONE
D3880_RS17410 NONE
D3880_RS17405 NONE
D3880_RS17400 NONE
D3880_RS17395 3829285 .. 3829323 -  -7.2  -3.29829   GAGAGGCTGGCAGAA   CCCTGCGCAGGCATGACC CGT GGTCAGGCGTGCGCCTCG   TCGAGTGCCGCGTAG  56 10
D3880_RS17390 NONE
D3880_RS17385 3826733 .. 3826744 -  -4.4  -3.54307   AACATCGTCCGGAAA                GACT ACTT AGTC                 AGCGATTGACCAAGA  52 24
D3880_RS17380 3825216 .. 3825238 - -16.3  -5.79526   ATAGCCCAAAAAAAA           GCCTCGCCG TTATC CGGCGAGGC           CTTGCTTGTAGCTCG 100 55
D3880_RS17360 NONE
D3880_RS17355 NONE
D3880_RS17350 NONE
D3880_RS17345 NONE
D3880_RS17340 NONE
D3880_RS17335 3813342 .. 3813355 -  -9.5  -3.14132   GCCTCTCCTGATTAA               CGGCC ACCT GGCCG                CATGAAATGCTCGAA  61 50
D3880_RS17330 3811570 .. 3811593 - -16.8   -5.0538   CCGGATCGGAAAAAA          GAAGGGAGCC CGCA GGCTCCCTTC           TTCATTGCCGAACGA 100 46
D3880_RS17325 NONE
D3880_RS17320 3809048 .. 3809058 -  -6.8  -2.62613   TGTTAGTTGAAACAT                 GTCC AAG GGAC                 TCCTCATCATCTACA  49 222
D3880_RS17310 3807920 .. 3807935 -  -3.2  -3.91897   CTGGGTACGCAGAAA              TGGGCA TTGC TGGCCA               ATCACGGTGTGCTGG  58 394
D3880_RS17295 3805205 .. 3805220 -  -6.8  -3.56643   GCCACACCCCGGAAA              TCACCG TCAA CGGCGA               TGAAGCCACTGGCCT  58 416
        cysQ 3795103 .. 3795115 -  -4.8  -4.28774   GCAGGGAAGCCAAAA                CCGA GAGCG TCGG                TCAGGCCATGGGTGG  65 94
D3880_RS17240 3792801 .. 3792811 -  -6.8  -4.26076   CCAGGGCCATGAAAA                 TGGC GAA GCCA                 TGGCCCTGGCTGGTG  71 230
D3880_RS17220 NONE
D3880_RS17215 NONE
D3880_RS17210 NONE
D3880_RS17205 NONE
D3880_RS17200 NONE
D3880_RS17195 NONE
D3880_RS17190 NONE
D3880_RS17185 NONE
D3880_RS17180 3780362 .. 3780377 -  -6.1   -3.9009   AACCCATCCTACAAA              GCCAC ACCGCG GTGGC               TGTCCTAAAGTCGTT  62 30
D3880_RS17175 3779294 .. 3779320 -  -4.2  -2.59431   CGGTGCCAGAACGCA         GCAGCGCCGGTC TTG GCCCAGCGGTGG         AAAATGCTTCGCAGT  43 124
D3880_RS17170 3778368 .. 3778378 -  -4.6  -2.52676   TACTGCCTTAACTGA                 CCCG CGC CGGA                 TGCACCGTTCTCGGC  42 7
D3880_RS17165 3777724 .. 3777750 - -10.2  -4.80882   AGTCGATATGAAAAA        CGCCCC-CTTC CCTGTT GAAGCGGGGCG         TTTTTATTGTCATCA 100 151
D3880_RS17155 NONE
D3880_RS17150 3772426 .. 3772440 -  -3.5  -3.39216   TGTGCACCCAAAAAG              CGCACG AGGG CG-GCG               AGCTTAGGCGCGGAG  47 302
D3880_RS17145 3770604 .. 3770625 -    -3   -4.2349   CCGCGAGACTCAAAA           GGCAAG GCGCGCGATG CTTGCC            CGCTCCCCGATAAGC  60 164
D3880_RS17140 NONE
D3880_RS17135 3767735 .. 3767750 -  -3.2  -3.04144   CTCCCAGCCGCAACA              TCGTCC GATA GGACTA               TTCATGTGCCTTCGC  43 40
D3880_RS17130 3766043 .. 3766064 -  -9.3  -3.75024   CGCTACGATGAACAA           CGCCGGGAC TATT GCCCAGGCG            TCATTGACCTCGGCC  68 327
D3880_RS17120 NONE
D3880_RS17115 NONE
D3880_RS17110 3762849 .. 3762862 -  -2.3  -3.86916   CAGGACTACAGCAAA               CCGCT TCCA ACCGG                GCGGCCGGGCGCATT  54 328
D3880_RS17105 3761445 .. 3761459 -  -4.2  -4.57073   TAGGCCGTTGAAAAA               CGGC CTACTTT GCCG               ATCCGGCCTGCTAGG  70 36
D3880_RS17090 NONE
D3880_RS17085 NONE
D3880_RS17080 3753534 .. 3753550 -  -7.9  -2.87931   TCCAGTGGTCACAGA              CCTGACG CCG CGGCAGG              GTCAGCAGGGCTCTG  55 285
D3880_RS22800 3753094 .. 3753118 -  -9.4  -3.05769   GGCGCAAACCAGATA         GGCGATCAGTG AACG CA-TGATCGCC          TCCATGCTGCAACGT  60 217
D3880_RS17075 NONE
D3880_RS17070 3749630 .. 3749643 -  -2.3  -2.93207   AAGACTACTTAGACA               GAAGG TTAA CCATC                GATACGCCAGCCAGC  40 79
D3880_RS17065 3748168 .. 3748195 - -11.2  -4.27316   CGGCGCAACGCAAAA        GCCCCAGGCGCT TGGA AACGACCGGGGC         TTGGGGGGTTATAAG  89 68
D3880_RS17060 NONE
D3880_RS17055 NONE
D3880_RS17050 3745567 .. 3745591 -  -2.8   -3.3393   TGGACTAGAGAAAAC         CGGACTGACTC TCAA GAACC-GCCCG          CCGCACCCTCCAGCG  44 12
D3880_RS17045 3744246 .. 3744258 -  -4.8   -3.6502   TACCCGGTATCGAAA                CCGA AGCGG TCGG                CCAAGGCGCCGAGCA  54 157
D3880_RS23110 3743306 .. 3743339 -  -5.9  -3.58037   CAGCAACGGGGCAAA     GCCATGCCCTAGCAAG CTG CCCGCCAGCGC-CGGC     CCGGCCATGGGACTG  57 60
D3880_RS17020 NONE
D3880_RS17015 3737134 .. 3737152 -  -6.6  -3.65812   CGGCGCTGAACACAA             CGCGGTAA TCA TCCCCGCG             TCAGTGTTGGGCTTC  60 112
D3880_RS16950 3720454 .. 3720474 -  -4.6  -2.78816   TGATCGTCGAGGACA           TCGCC-GCC GGCC GGCTGGCGG            CCCTCAGACCGATCG  43 235
D3880_RS16940 3717732 .. 3717769 - -20.7   -4.2528   CTCCAACTGAACAAA   GCGGACAGTC-TGCCGGT TTC ACCGGCCTGACTGTCCGC   ACTTTCGACTGGCGC 100 84
D3880_RS16935 3717342 .. 3717358 -  -9.3  -2.79501   GAGAGGGGCACGACA              GCCGCCG ATC CGGCGGT              CGAAGCGGGTCTGAC  57 130
D3880_RS16930 3716459 .. 3716472 -  -3.1  -3.01712   TCTCGGCTCCTAATA               CG-CAG ACT CTGGCG               GAAATCCTTCCGCCC  43 6
D3880_RS16925 3714343 .. 3714395 -  -4.1   -4.5442   CGGGTAACGACAAAA GCCGCTTCGCTTTCGCCCCCTCTCCCG TTA CGGGAAAGGGG-CGCT-GCG--GCGTC ACGCACGACCGATCC  68 128
D3880_RS16910 NONE
D3880_RS16905 NONE
D3880_RS16900 3699348 .. 3699390 -  -8.2  -3.62522   CAAGGTGTGCAACAA CCTGGTGCTGGCGGTGCAGA TGA TCGGCACCGCCGAAGCCATG GCCCTCGGCGTGGCT  65 367
D3880_RS16875 3694986 .. 3695002 -  -2.1  -3.20991   GGCAAGTCAAGGCAA              GTGCGGG CGG CCCGGAT              ACTTTGCGAGTCCCG  43 42
         ung 3693813 .. 3693830 -  -9.1  -3.13403   GCTCGCCGAGGAATA             CCTGGCG CTAC CGCCAGA              CAAACAGATCGCCAC  59 419
D3880_RS16845 NONE
D3880_RS16840 3689668 .. 3689680 -  -3.3  -4.24342   GTGCGCACCAACAAA                CGCCT GCA ACGCG                CCCGCCACCGGGTGC  63 393
        rpoE NONE
D3880_RS16825 NONE
D3880_RS16820 NONE
D3880_RS16815 3685293 .. 3685308 -  -8.2  -3.55907   GAAGAAAACTCACAA              CGGACC CGCA GGCCCG               GCAAGCATCGCGCGG  62 4
D3880_RS16810 3683790 .. 3683807 - -12.7   -4.7497   GGCAGGCATGAAAAA             GGGCGGT GAAA ACCGCCC              TTTTTCCCTAGCCAG 100 46
        lepA NONE
        lepB 3680916 .. 3680938 -  -4.1  -3.59979   TCTGTTTATTGGAAA           GTCTCGCCA ACCCG CAGCAAGAC           TATATATGGCGCGCG  51 87
D3880_RS16795 NONE
         rnc NONE
         era NONE
        recO NONE
        pdxJ 3677468 .. 3677501 -  -7.3  -3.14344   GACGCTGCTGATCAA     CCTGCTGCGCCGCTGA GCC TCAGCCGCGC-GCCGC     TGCGGCGACGATCAG  54 11
D3880_RS16735 3669679 .. 3669706 -  -3.3  -2.82193   ACGATACCGAGCATA        CCGACTCCCTGC GCGCT GCACGG-GACGG        CCGTCCGCCGAACAC  41 138
D3880_RS16730 NONE
D3880_RS16725 3666615 .. 3666638 -  -5.2  -2.93708   CCCGCGCAAAAACAG          GCTCCGTCGC GGCC GTGACGAAAC           GTCAACAGACCCTAG  45 37
        putA 3662658 .. 3662692 -  -6.5  -3.72576   CCGGCGTCCAGCAAA    GC-TGGTGGGTTACGCC TAC GGC-TAACCCACCCTAC    GAATCGGATACCAAT  63 235
        putP 3660785 .. 3660801 - -15.1  -5.75342   CCGGGGCAAAAAAAA              CCGGCCC AGG GGGCCGG              TTGAAGCACATCGGG 100 139
D3880_RS16705 3658806 .. 3658818 -  -4.8  -3.18023   CCAGCAGCAGGAATA                GCCA GGCCA TGGC                GCACCTCCTCAGAAG  48 34
D3880_RS16700 3658369 .. 3658380 -  -3.6  -5.75342   CCGGGGCAAAAAAAA                CCAG GGGG CCGG                 TCGAAGCCCATCGGC 100 155
D3880_RS16690 NONE
D3880_RS16685 3656030 .. 3656048 -    -3  -3.15544   CGCTAGCGTGATGAA             GGTTGCCA TGG TGGCACTC             CTGTTCAGGTTGCGT  43 174
D3880_RS16680 3655416 .. 3655434 -  -2.3  -3.66803   GGTGAAGAGTTCAAA             GGCCATG AACCG CACCGCC             ACCTTCGTCTTCTAT  51 339
D3880_RS16670 3651155 .. 3651171 -  -2.1  -3.85817   ATCCGCTCCTACAAA              GGTGAAC GCC GGGCACC              CTTCACGTCCGGCCA  54 239
D3880_RS16665 NONE
D3880_RS16660 NONE
D3880_RS16655 3648885 .. 3648928 - -10.2  -3.28416   GATGATGGATAGCAA CGGCGACGGCCAGATTTCCCA TGA CGAGTA-CCTGGCCAACGCCG AGAAGCAGTTCAAGC  63 428
D3880_RS16640 NONE
D3880_RS16635 3645379 .. 3645406 -  -2.6   -3.7732   CTGCCACACCAACAA        GTGCCCGACCGGC GTG GCCACCCAGG-AC        CCGCTGCGCCAGCGC  54 337
D3880_RS16615 3641557 .. 3641568 -  -2.2  -4.16842   GTGACGGCCAAGAAA                CTCG GCAG CAAG                 GGCCTGTACGCCACC  62 242
        metE 3638006 .. 3638025 -    -5  -2.83639   AATTTGATGAAGAAT            GCCAAG CGGTCGAT CTTGGC             TTGAAGGCTTTGATT  45 286
D3880_RS16600 3636463 .. 3636483 -  -2.3  -3.72576   CGGCCGGCGAGGAAA            GCGTCAAGG TCA CCGGGCCGC            TGTCGGCCAACCACG  51 465
D3880_RS16590 3634514 .. 3634543 -  -8.6   -5.0538   GCTCAGCGGAAAAAA       GGCCACTC-CGGT GGGGT ACCGAGAGTGGCG       AAATCCCGCATTGCA  93 120
D3880_RS16585 3632607 .. 3632655 -    -5  -5.75945   ATCGGGCAAAAAAAA TCCCGCGGCACGCCCCTCCTGCC GCTC GGCAGTCGGGGCTTTTC-CGGGT TTACTCCACCGCGGC 100 26
D3880_RS16580 NONE
D3880_RS16575 3629819 .. 3629841 - -13.4  -3.14132   CCTCGTCTTCAGCAA           GGAGCGGCAG CGA CTGCCGCTCG           GTAGATGCCCTGTTG  78 48
D3880_RS16570 3628833 .. 3628851 -  -6.6  -2.89564   TTTCCAGCCTAGAGA             TCGAGCAC CAG GCGCTCGC             TGCGCGCGCGCGACA  51 0
D3880_RS16565 3627173 .. 3627198 - -11.2  -3.14132   CTGGCGGCGGACCAA         GC-TCGGGCTG TTCCT CAGCCCGATGC         AGCAGACACGCCTGC  64 223
        ybaK 3624173 .. 3624188 -  -3.2  -3.14564   GGATGGGCTGAGCAA              CGCGAT ACCC ATCGCC               GACGCTTGGCTCCTG  45 84
        glpK NONE
D3880_RS16540 3621740 .. 3621752 -  -3.3  -3.01924   TATTGCGCCGCAACA                GCTGG CTA CCAGT                CTTCGCGTACGCCGT  43 18
D3880_RS16535 3620671 .. 3620683 -  -9.1   -3.1886   AGCGAAGCGGAGTAA                CAGCC GAA GGCTG                GCCCGCAGGGCGAGC  61 206
D3880_RS16530 3619247 .. 3619272 -  -3.1  -2.50935   ACTGCAGGCACTAAT         CGTCGGCAAGA CCTT CCTCGGCGCCG          CCACCCTCTACCGCC  39 207
D3880_RS16510 3614275 .. 3614323 -  -3.3  -4.79756   GAGACAAGGCAAAAA CAGCCGAAGAA-GCGCAGTTTAC GAGTT GTAAA-TGAGCATTCTGAGGCTG TTTTTAACGCCGTAT  74 72
        grxD 3613763 .. 3613779 - -15.1  -5.28176   CGCAGGCACAAAAAA              GCCCCGC ATC GCGGGGC              TTTTTTCATACTGCG 100 47
D3880_RS16490 3611739 .. 3611756 - -14.1  -5.08088   AACGCCCAATAAAAA             GCCCCGC AACT GCGGGGC              TTTATTTATTGCTGG 100 238
D3880_RS16475 NONE
D3880_RS16470 3607500 .. 3607530 - -15.5  -4.36914   TGGTGGCTCATAAAA       GCATAACCCCGGC GCTTG GCCGGGGTTATGG       GTGTGGCTAGAACCG 100 50
        gloA 3607023 .. 3607040 - -14.1  -5.06414   CCCGCTCAATAAAAA             GCCCCGC AGCT GCGGGGC              TTTTTTATGTCTGCG 100 49
        apbC 3596302 .. 3596313 -  -7.2  -2.72043   AAGCGCGGTTCAAAG                GCCG TCGT CGGC                 AGGACTCGCGCCTTG  50 85
         dcd 3595621 .. 3595638 - -14.1  -5.24129   TGCGCGCAGAAAAAA             GCCGGGC AGAT GCCCGGC              TTTTGGCCACGCCAG 100 46
D3880_RS16385 3590891 .. 3590920 - -23.7  -5.24129   CTGCGCCACAAAAAA       CCATGAGGCCCGC GACT GCGGGCCTCATGG        TTTAGTCCTGCAGTT 100 27
D3880_RS16370 3589025 .. 3589062 - -18.4  -3.16935   AAACAGCGGGAGGAA   CCCGCCGCCGCG-GCGC ACCTG GCGCACATGGCGGCGGG   ATGAAGCGGGATTAA  90 37
D3880_RS16365 NONE
D3880_RS16360 NONE
        dinG 3585020 .. 3585035 -  -3.9  -3.34029   TAAATACCGCCAGAA              GCGCC GCATAT AGCGC               TCCCAGAAAATCTGA  47 94
D3880_RS16345 3582380 .. 3582390 -  -2.4  -4.07133   GATCTGCACAAATAA                 CTCC TTG GGCG                 AGGCACGTCGCTCGC  57 127
D3880_RS16340 3581197 .. 3581210 -  -2.4  -3.57792   TGACTCATCCGCAAA               GACT TAACCG AGTC                GGCTGACGAATGGCT  49 40
D3880_RS16335 NONE
        pdxH 3579504 .. 3579525 -  -4.4  -3.51924   CGCCGATGCAGACAA          GCGC-GC-GC TCAT GCTGCAGCGC           CTCGGCGAAGCGCAG  52 266
D3880_RS16320 3578694 .. 3578711 -  -9.8  -5.31275   CGCGAGCAGAAAAAA             GCCGGC GCTACG GCCGGC              TATTGGGCTGACATG 100 46
D3880_RS16315 NONE
D3880_RS16310 3576473 .. 3576486 -  -8.1  -3.47322   TGGTACGACAACGAA               TGGGC CTTC GCCCA                TCGCATGCTGGATGT  59 79
D3880_RS16300 3573966 .. 3573990 - -11.3  -2.75064   GCGTGGACGGAATGA          GCGGCGCGGTG CAG CACCTGGCCGC          CGAGTTGCGCCTGAA  60 142
D3880_RS16290 3572574 .. 3572585 -  -2.2  -4.32857   GGCCTCAAAGACAAA                CTGA TGGG CCAG                 GTCAACCTGCTGCTG  65 356
D3880_RS16280 3570884 .. 3570906 -  -9.8  -3.51232   GTCCGGGCAAACCAA           GATCGAAGGC CTG GCCATCGACC           TGGTGTCCGGAACCT  67 420
D3880_RS16230 3562843 .. 3562854 -  -5.8  -3.56837   GTGCAAACATGACAA                CGCT CCTT AGCG                 TGGGGAAACTCCGTG  57 101
D3880_RS16225 3562423 .. 3562443 - -15.4  -3.84451   CGGGCTAAATGTAAA            GGGCCCGC TCGCG GCGGGCCC            TACAGCGCAAACGTG  95 57
D3880_RS16220 NONE
D3880_RS16215 3560625 .. 3560635 -  -5.4  -3.62591   GGTAGAACCGGCAAA                 CTAG AGC CTAG                 GGCGGCGCCTGTCTG  57 84
D3880_RS16210 3558732 .. 3558771 -  -4.9  -3.63991   CAGCAGTGCCAACAA  GTTCGTCCAGGCCCAGCG CGAGC CGCTGAGCCAGCA-GATC  AACGCCGCCGAGGCC  55 481
D3880_RS16200 NONE
D3880_RS16195 NONE
D3880_RS22795 3554750 .. 3554765 -  -3.9  -3.02144   GCAGTTCCGCGAACA              GCGCC TGGCCG AGCGC               TTCTCTGCGCTGTGA  43 45
D3880_RS16185 3552647 .. 3552662 - -10.4  -5.44119   TTCAGGCGAAAAAAA              GGCGAC CGAA GTCGCC               CAAATTGCCTTGCGT 100 336
       fadD2 3543599 .. 3543621 - -16.4  -5.81412   CCCAGTCAAAAAAAA           GACCGAAAGC CAG GCTTTCGGTC           ATTTCTTATGCAAAG 100 302
       fadD1 3541699 .. 3541730 - -24.6  -3.57144   CGCCGGACGCGGAAA      CGACAAAGCCCCGC CGGA GCGGGGCTTTGTCG       ATCAAGCGAAGACTC 100 39
D3880_RS16135 3540934 .. 3540979 -  -6.2  -2.78384   TTGGTGCTGAGCACA GCGAAGCCCAACGCCACGG GACCCGACT CCACA-CGTTGGGCTTCGA CGCTGCGCGCCTCAA  46 163
        hrpA 3536643 .. 3536691 -  -6.6  -4.19817   CCCACGCAGGCAAAA GCCCCTCTCCCCCGGCCTCTCT CCCGT AAACGGGCGAGGGGAGAAAAGC CTCAGGCTTCGACCT  71 27
D3880_RS16120 3534571 .. 3534618 - -13.5   -4.2828   TCCTACGCAGCAAAA GCCCCTCTCCCC-CGCCCCTCT CCCGT AAACGGGCGAGGGGAGAAAAGC GAAGCGTCACGTCTC 100 64
D3880_RS16110 3533159 .. 3533172 -  -3.1   -4.0896   AAAGGCCGGCCAAAA               CGC-CA ACC TGTGCG               GTCACCTCAGCCGCG  59 32
D3880_RS16100 3531262 .. 3531284 -  -2.7  -3.63744   GCGCTGGGGAAAATA          CCCGC-CA-CG CCG CGATACGCGGG          CTCAGGGCTGGTCCG  49 27
D3880_RS16095 3530844 .. 3530882 -  -6.5  -4.07568   TCTGGTGGCCGAAAA  GCACGCGCC-GGAACCGC ACGC ACCGCGCCTGGCGCGGGC   GCGGATGAAGGAGGA  68 118
D3880_RS16090 3530430 .. 3530458 -  -5.4  -2.82834   CATCCTATGAGTAGA       CAGCCAAACCTTCA GGG TGA-GGTC-GGCTG       CGGCTTTACCAGCGG  46 31
D3880_RS16065 3525687 .. 3525726 -  -2.6  -2.87344   CACTCGTGGGAGAGA  GGCCGGGGGAGACAGACA ACAG CGGCCCTCTCCCCAATCC   TCTCCCGCCTTTCTT  40 135
D3880_RS16060 NONE
D3880_RS16055 3524790 .. 3524801 -  -5.8  -2.90194   AGCGGGCGAATGACA                GCCT ACGC AGGC                 ACCCTCAGGAGTTCT  48 30
D3880_RS16050 3522820 .. 3522835 -  -3.2  -3.44146   GTGCTCGACAAGCAA              CGCCAA CTGG TCGGCA               TCGTCACCCTGGTGG  48 413
        dmeF 3518525 .. 3518563 -  -8.7   -3.5393   AGGACTCGGCGGAAA   CCGCGCTGAACTCCTCG ACCGA CGTGCTGTTCACCGCGG   CGGGCTGCATGGCCG  62 159
D3880_RS15995 3511070 .. 3511085 -    -6  -3.36749   TATCGTCAAGAGCAA              GCCGTC AGGG GCCGGC               ACCGACGATTGCCTC  52 14
D3880_RS15990 3509984 .. 3510006 - -11.3  -3.62046   GGAGGCGCTGAACAA          TGCCGTCCGG CATG CCGG-CGGCA           AGGGCCAGAGCCTCA  70 250
D3880_RS15980 3507496 .. 3507511 -  -3.2  -4.02093   GAGATAAGAGAAGAA              CCGC TCTAGCCC GCGG               GTTGGCGTCCAGCGC  59 114
D3880_RS15975 3505954 .. 3505972 - -13.1  -5.77632   AAAAGCACAAAAAAA             GCCCCGC ACGAG GCGGGGC             TAAGCAAAGGAGCAC 100 59
D3880_RS15970 3504453 .. 3504467 -  -8.5  -4.38154   ACACCTCCGACAAAA               CCGGC GCCGT GCCGG               TGACCCTGGTCTACG  79 127
D3880_RS15940 NONE
D3880_RS15935 NONE
D3880_RS15930 3497650 .. 3497680 - -14.7   -5.7827   AAGAGAAATAAAAAA       GCCGACCAACCGG GGGAG CCGGTTGGCCGGA       CAAGCGCGCCCAGGA 100 90
        rarD 3496419 .. 3496438 -  -6.3  -3.53091   ATGCGGCCTTTCAAA            CGCTCGG CCATTT CCGTGCG             CCGGCGGCCAACGAG  56 214
D3880_RS15910 3494025 .. 3494056 -    -8  -3.71114   AACTGAAGAGAAAGA      TGCTGCAGGGCAGTC TTG AACTGCCCCGCA-CT      GGTTCAACAACCCGC  67 51
D3880_RS15895 3490070 .. 3490112 - -10.6   -3.1994   TACATCACCCAGGAA CTGGAAACCGAACAGCCATA GCG CACGGCTATTCTGCGTCCAG CCCCACCCTCAGCAG  65 11
D3880_RS15885 NONE
D3880_RS15880 NONE
D3880_RS15875 3486673 .. 3486684 -  -7.2  -4.47873   AGAAGACCGAGAAAA                GCGC GCTG GCGC                 AATAATCCGCCGTAC  76 83
D3880_RS15860 3483016 .. 3483036 - -12.7  -3.14931   CCGAGCCGGGAGCAA            TGAAGCAGA ATT TCTGCTTCA            CGTCCGGGGTGAGGT  74 109
D3880_RS15835 3479865 .. 3479878 -  -8.1  -3.14211   ACGCGCCCTGATGAA               TCCGG CGCA CCGGA                TGTCCAACTCGATCA  54 124
D3880_RS15815 3476009 .. 3476031 -    -4   -3.6944   TGCGGAAGATAAAGA           CGGGCAAGCT GGA ACCTCCCCCG           CAGGCTGAGGGAGAA  51 98
D3880_RS15810 3475079 .. 3475099 - -11.1  -3.08679   CGCGCCCACGCAACA            CCGTGACGC AGA GCGTCACCG            GGCTGGCTCCCGCGC  68 168
D3880_RS15800 3473959 .. 3473991 -  -7.6  -4.25256   CGGCCACGAAAAGAA     GATCGGCCCGGCGCC CAAC GGCACCCG-CCGCTC      CATGGGCAAGCGCTA  75 108
D3880_RS15790 3472196 .. 3472207 -  -3.6   -3.6715   CCAGGTAATGCGAAA                CGGC GAGA ACCG                 CATCGACGTAGATTT  54 424
D3880_RS15765 3469209 .. 3469222 -  -9.5  -3.43492   CTACATCCATCACAA               CCCGC TGAA GCGGG                GCTATGTGGATCGGG  63 172
D3880_RS15740 3461892 .. 3461902 -  -6.8   -2.6027   GGAAAATCGAATTCA                 TGGC CTG GCCA                 TCTGCTCAGGCGTCG  49 61
D3880_RS15735 3459841 .. 3459853 -  -4.8  -3.90112   TCTCGCTCAAGGAAA                GCCT GTTCA AGGC                GCTCTATCCGCTGGT  61 439
D3880_RS15710 3454956 .. 3454973 -  -9.8   -5.4477   AAAGCGCGAAAAAAA             GCCCGC ATCGAG GCGGGC              TGTGCGAGCTGTCCC 100 90
D3880_RS15705 3453581 .. 3453617 -  -7.8  -4.59773   TGGCAGGGTGAAAAA   CCAGCATGTGACCGGGC GGCG GCCCGGCCGCCAGC-GG    ACTACAGCTTCATGC  81 27
D3880_RS15700 3452654 .. 3452670 - -10.8  -2.92522   GGAGGGAACAGCATA              GGGCGC GCGCG GCGCCC              AGTACGTACTCTGCC  62 88
D3880_RS15695 NONE
D3880_RS15690 3449436 .. 3449484 - -10.9  -3.66999   AGCTATGCAGTCAAA CGCCGCCCGGTCAGCCGCTTCA TTTATT TGT-GCAGTTGCCCGGACGGCG AATTCCCCTTTTCCG  73 272
        ttcA NONE
D3880_RS15665 3445778 .. 3445826 -  -3.2  -3.64703   TTTCGTCCACCGAAA CATCGATCTGGT-GGATGGATAA AGCG TCATCCACCCTACAGGTTCAATG ATTGACCGTATGCGC  51 20
D3880_RS15660 NONE
D3880_RS15655 3444259 .. 3444285 - -18.8  -2.56596   GCCGGGAGGAATGCA         CGCACGCAAGCC TGG GGCTTGCATGCG         CTGGATTTAACGATG  88 32
D3880_RS15650 NONE
D3880_RS15645 NONE
D3880_RS15640 3442860 .. 3442883 -   -16  -4.72272   CGCCGTGACGAAAAA          GGCCAGCACC GGGT GGCGCTGGCC           TTGGATTGGTGGACC 100 32
        btuB 3440515 .. 3440548 - -16.1   -2.6563   GGGTTGAACAACGTA     GGGTGGGTTA-GCCGC GTA GCGGCGTAACCCACCG     CTTTTTCAACGACCG  78 42
D3880_RS15630 NONE
        cobO 3439225 .. 3439238 -  -3.8  -3.19602   GCTCCTACATTAATA               GGCA TAGCGT TGCC                GATACGAAGGAAGCT  45 40
D3880_RS15620 NONE
        bluB 3437170 .. 3437183 -  -4.5  -2.79183   GCCAGGCCGAGCACA               GCCAC GCTC ATGGC                GTTTCTCCCCAACGA  43 19
        cbiB NONE
        cobD NONE
D3880_RS15600 3433811 .. 3433821 -  -3.2  -3.07575   AAAAGCGCCATCCAA                 CCTA CGT CAGG                 CCGCACAACTGCTTG  43 16
        cobU NONE
        cobT NONE
D3880_RS15585 3431563 .. 3431581 -  -4.4  -2.71364   TCAGCGCCGGAATCA             GCCAGCCC ATC AGACAGGC             GTCTGCGCGGGAACG  43 16
D3880_RS15580 3430821 .. 3430850 -  -5.5  -2.87564   GGATCGGCCGACACA       GTTGGCGCCGCCC TTCA GGTCAGTGCCAGC        ACCAGCAGCACCGCG  48 10
D3880_RS15575 3429400 .. 3429424 -  -3.3  -3.18681   GCCCAACTGCAGCAA          GGCCAAGCCGC CCT GCTGCCAGCCC          CACCAGATCAAGGTC  45 90
D3880_RS15570 3428431 .. 3428443 -  -3.3  -3.16323   AAAACGGCTGAGGAA                GCGGA GTT TACGC                GTTGTAAATGAGCAT  45 216
D3880_RS15565 3427197 .. 3427234 - -13.3  -2.68823   GTCGCGGGAGACAAG   GCTGC-CCGGCCTGCCTC TTA GCGGGCGGCCGGCGCAGC   AGTCCCCGCCCCCGT  72 40
         rnd NONE
D3880_RS15525 3420011 .. 3420023 -  -4.7  -4.42976   GGATAAATGAATAAA                CGGAG TGG CGCCG                GTGGCTCAGAACCTG  68 203
D3880_RS15520 3418939 .. 3418965 -    -5  -3.53444   GGATCGCGCCGGAAA         GATGGGTATCGC TGC GCTCAACCCATC         CTCGAAACTCAGGCT  52 62
D3880_RS15515 3417942 .. 3417987 -  -4.5  -4.84761   ACAGGTCCACAAAAA CGGGCGGCACATGATGCCAGAG CCA CGCCGGCG-CATCTGCCGGCAG ACTGCCAGCACGCCG  78 311
D3880_RS15510 NONE
D3880_RS15505 3415687 .. 3415739 -  -3.4  -3.07622   AGAGAGGTCAGGGAA CGGGCCATTG-CGGGATACTCGTCTG TGG CTGAGGAATAGCCCGACAGTA-CCCG TGGCTGAGCGCCCGC  43 78
        aguA NONE
D3880_RS15495 3413306 .. 3413338 - -12.7  -2.62184   TTCTTGCCCATATGA      CGACGTAGCCCGGAT GCA ATCCGGGCTACGAAA      TGTCACGTTGTAGGA  68 168
D3880_RS15475 3410885 .. 3410916 -  -2.8  -4.25104   CGCGCCCTACGAAAA      CG-TCCGCGCCCAGT GCT ACCCGGCGCTGCTCG      CGGTGGCCGGCTACA  63 413
D3880_RS15465 NONE
D3880_RS15460 NONE
D3880_RS15455 NONE
D3880_RS15450 3406523 .. 3406544 -  -5.7  -3.25896   GCAGCAGCGACAACA           CCAGCCACC TGCC GGCAGCGGG            CACGGTGCTCAGCGT  51 136
D3880_RS15425 3400399 .. 3400428 - -12.9  -3.73968   AAATTCCTGACCAAA       TGAAGAAGGGCCC GCAA GGGCCCTTTTCCA        TTTACGAGGTCATGC  85 128
        cysK 3396356 .. 3396373 - -14.1  -4.34402   CCCCGCACAGCAAAA             GGCCGCC CGCT GGCGGCC              TCGAGCAAAGGAGCC 100 188
D3880_RS15360 3384758 .. 3384780 -  -2.7   -4.1891   CCGCGCCAAGAGAAA          GTCAGGCG-AG GCC CTGCGCCCG-C          AGAAACTGCTCAAGA  60 4
        aceK NONE
D3880_RS15350 3381782 .. 3381800 -  -5.2  -3.67989   AAAAGGGGATCGAAA             TGGCCAAA GCA CTTGGCCG             CATGATGCCGAGGCG  57 142
D3880_RS15345 NONE
D3880_RS15340 3379493 .. 3379509 - -15.1  -2.98823   CCCGCCCTATAGACA              GGGGCGC TGC GCGCCCC              TTTTCGCGAATGAAT  80 84
D3880_RS15335 3378670 .. 3378681 -  -7.2  -3.06501   GACAGCCGCAGTGAA                GCGG GATG CCGC                 GCTTTAAGCCTGGGG  52 140
D3880_RS15330 3377918 .. 3377962 -  -7.2  -2.63479   AACAGGGCGAGATGA GTGAGTGGGCCTTGTCCCGTGC CAG GCAGGGG-CAAGGCC-AGTTAC GGTTCGGACCCGATT  49 39
D3880_RS15290 3371024 .. 3371036 -  -3.4  -3.21436   AAGCGATAGCAAAAC                GGTT GATCT AACC                CGCTCTAGCCGAGGG  45 96
D3880_RS15280 3368622 .. 3368658 - -13.6  -2.90496   GCCTGCTGGAAACCA    CCGGCCAGAGCGTCGA ACAGA TCGCCGGGCTGGCCGG    CTTCGGCTCCCCGGT  69 104
D3880_RS15270 3366891 .. 3366913 -  -3.2  -3.53012   CCCCTTTCCGGGAAA           GATGGTCGGG TGG CCCGTGCTTC           TTGGACCACCCTAGT  49 163
D3880_RS15225 3353551 .. 3353573 -  -4.7  -3.15078   GACAGCCGACCAACA           CACTGCGCC CGCGT GGCGCCCTG           TCTGGGCCGGGCCCT  48 138
D3880_RS15220 NONE
D3880_RS15215 3351929 .. 3351958 - -11.5  -3.59966   ATAGTCGAGATACAA       GGGTGGGTTA-GCC ATA GGCCTAACCCACCA       ATCCTGCTGGACCCC  77 184
D3880_RS15210 3350469 .. 3350485 -  -7.9  -3.04322   GGGAACTGGGCAAGA              GCCCGTG GTT CACCGGC              GAGGCGTTCAGCGCC  53 258
D3880_RS15200 3349261 .. 3349272 -  -2.2  -4.56597   TGCCCCGCGCAAAAA                CAGGC TCC GCC-G                CGGCCGGAGCGAAAC  66 64
D3880_RS15195 3348221 .. 3348248 - -10.4  -3.15544   CTGCAGCGCGATCAA        CCGCGCGGGTCG CCCC CGCCCCCCACGG         CGAGAACAGGCGAGC  65 47
D3880_RS15185 3347008 .. 3347040 - -21.5  -3.57561   TGCCAATTGGCCAAA      TCCGGAATGCCCATT CAG AACGGGCATTCCGGA      GTATTAAACTTATTA 100 81
D3880_RS15155 3329347 .. 3329395 -  -7.4  -3.09516   CCGTGTAGGAGCGAA TTTATTCGCGATAGGGGGCAGC GCGGA GCTGCTCTTGTTCGCGAATAAA TTCGCTCCTACGGTC  52 53
D3880_RS15140 3326615 .. 3326634 -  -4.2  -2.57463   AAGGGCGGTGAGAAT            GCGC-GCGA TCA TTGCTGCGC            CTCCTTGAGAATTTC  43 14
D3880_RS15135 3324926 .. 3324945 -   -15  -4.93968   ATGCACAAGCAAAAA            GGGCAGCC CGAA GGCTGCCC             AAGTGGCTCAGAGAG 100 48
D3880_RS15130 3324475 .. 3324494 -  -2.7  -3.07994   GGCAATGCCACTCAA            CGCCGCC CCTTAC GCCAGCG             CAGCCACAGCCAGCC  41 2
D3880_RS15125 3323496 .. 3323509 -  -2.3  -3.02096   TTGACCAACCAGACA               GCAGA AATA TCAGC                CTTGCTTGGCCTTCG  41 21
D3880_RS15120 3322085 .. 3322107 -  -2.7  -4.11869   GAAAAAATCCACAAA          CTGCTGGCTG GTAA CA-CTAGCAG           GCCAAATGCCAGCCG  57 134
D3880_RS15115 3320510 .. 3320525 - -11.8   -5.4251   CGCAGACAGAAAAAA              GGCGCC AACC GGCGCC               TTTTTCTCACAACGG 100 43
D3880_RS15110 3319934 .. 3319944 -  -5.4  -3.56092   TGAGCATCGGCGAAA                 CTCA CGG TGAG                 GGGTCGAGCGGCATA  55 60
D3880_RS15105 3319114 .. 3319126 -  -3.3  -4.25104   GGTTCTGTACGAAAA                GTCGC CGA GCGAA                GGTCAGGCAAGGCAA  62 492
         pap 3309046 .. 3309078 -  -8.3  -4.30978   GCTAATGGATGAAAA      CCGGCGTCGAGAA TAAGACT TGCCCGCCGCCGG      CCGCGACGATTATTC  77 75
D3880_RS15055 3307755 .. 3307770 - -11.8  -5.24129   TGCCCCCATAAAAAA              CCGCGC CTGA GCGCGG               TTTTTTTGTTTCATC 100 48
D3880_RS15045 3306113 .. 3306124 -  -4.4  -3.57144   CGGCGCATCGGCAAA                TGGT CCGC ACCA                 TCCTCGGCTTCTGCG  52 155
D3880_RS15025 NONE
D3880_RS15020 3301934 .. 3301965 - -15.1  -3.86346   GGACCGGGTGATAAA      CAGCAGCGCCGGC TATTGG GCCGGCGCTGTCG       GGAAGTTTACCAGAA  93 82
D3880_RS15015 3300921 .. 3300934 -  -2.3  -3.02471   GGTCCATCACATAGA               GCAGG CGGG CGTGC                ATCGGTTCAGGACTC  41 32
D3880_RS15010 NONE
D3880_RS15005 3298087 .. 3298103 -  -5.8  -3.53444   CCAGCCGCCTGGAAA             GCGCGGC GGAA GCCG-GC              GAGATCCTGATCTCC  54 452
D3880_RS14985 3294394 .. 3294446 -    -4  -4.57073   CAGGCCGCTGAAAAA CTACTGC-ACTCGGCTATGCAGCGT TGCA ACGCAGCGAAGCGGAGTAACAGCCG AAGGCTGGCCCACAG  68 222
D3880_RS14970 3290546 .. 3290556 -  -5.4  -2.57344   TACGCGCCCTATAAC                 TCCA CTC TGGA                 TATGGCTCAAAAGCT  46 54
D3880_RS14935 NONE
D3880_RS14930 3284435 .. 3284445 -  -6.8  -3.02144   CGACCCTGGCCAAGA                 GTCG GGT CGAC                 GCTTTAACGGCACAG  51 218
D3880_RS14920 NONE
        scpB NONE
D3880_RS14910 3280949 .. 3280965 - -12.3   -5.5074   GAAGCCAATAAAAAA              GGGACTC GAC GAGTCCC              TTTTTTATTCATTGC 100 45
        mtnA 3274704 .. 3274734 -  -7.5  -3.64703   CTTTTTCTAGTGAAA       CTTCACACCGCCC TTCCT GAGTGGCGCGAAG       CTCGCCATTGCCAGC  60 202
        gyrA 3271839 .. 3271863 - -12.9  -3.20723   CTCTCACTAAGGTAA          GGCGAACGACA CTG CGTCATTCGCC          GCTATTGCCTGCCAC  74 74
        serC NONE
        pheA NONE
        hisC NONE
D3880_RS14855 NONE
         cmk 3265478 .. 3265493 -  -6.8  -3.21912   TCCTGAATTGATCAA              GGACGA GAAT CCGTCC               ATCTTCCACATCCCA  54 110
        rpsA 3263737 .. 3263754 - -12.7  -5.61881   CCTGAAAAACAAAAA             GGGCGAC CGAA GTCGCCC              TTTCCTATGGATCAA 100 48
        ihfB NONE
D3880_RS22785 3263128 .. 3263142 -  -2.1  -2.64155   CGCGCCCCAAACTTA              GC-CTC AACT GAGCGC               CTATCAAAGCTCCGA  38 29
D3880_RS14835 3262688 .. 3262705 - -12.7  -4.78149   TCCAGAATGCAAAAA             GGCCGGT CATG ACCGGCC              TTTTTCACAGCGTCT 100 46
        uvrB 3259081 .. 3259096 -  -2.5  -4.07687   AGGCGGCGTTGAAAA              CAGGC CCCTAC ACCTG               CAGCAGCCGCTCGCG  57 17
D3880_RS14800 NONE
        gltX 3252903 .. 3252935 - -13.3  -3.08992   ACTTACCCCAATACA      GCGGCGGCCGCACTT GCG ACACGCGGCCGGCGC      ACAACTCAAGGAATG  76 31
D3880_RS14790 3252674 .. 3252700 -  -3.7  -3.54935   CAAACCCTTCTGAAA        CATCAGCCAGCC TTAC GACTGACCG-TG         GCACCTCTCATTGAG  49 44
D3880_RS14785 3252553 .. 3252570 -  -9.9  -3.29043   AACGTCTCTCGACAA             GTAACGC CGAG GCGTTAC              TGCTGGAATAATGGC  68 37
D3880_RS14780 3252422 .. 3252446 - -15.8  -3.64283   GAAACCTTCGAAGAA          CAAGGCCAGC ACTAG GCTGGCCTTG          TTTAGTGATTGGTGG  93 35
D3880_RS14775 3252275 .. 3252308 - -13.3  -4.82901   GGGGCCGCAGAAAAA     CAAAAGGGCCATTCC GTGA AGAATGGCCCTTCTA      AAGTCCCGCAAAGCA 100 48
         pgl 3251404 .. 3251427 -  -2.4  -3.05596   GACCTCGCGAGCCAA          GGCCATTT TTAACGCC ATATGGCC           GACGCGCAGCAGACC  41 53
         edd NONE
D3880_RS14760 NONE
D3880_RS14755 3248321 .. 3248339 -  -6.6  -4.25104   GGCTTCCCAGGAAAA             GGCGCGCA GTT TACCCGCC             TTCCCCGCCGCAGGC  71 92
D3880_RS14750 3247295 .. 3247312 -  -7.7  -3.54459   TCAAGGGTGTCCAAA             CTG-GCCG CAG CGGCTCAG             GCGTTGGCCGCTGCC  62 22
D3880_RS14745 3246695 .. 3246716 - -17.3  -3.90112   CCGGCCTGAACGAAA           CAGGGCGCC CGAA GGCGCCCTG            CTCGACTAGCGCGGA 100 49
        leuC NONE
        leuD NONE
D3880_RS14715 NONE
        leuB 3238087 .. 3238114 - -13.4  -3.05963   ACCTTTATGGGAATA        CCGACCCACCGT CACG ACGGTGGGCCTG         AAAGATTACAGATTA  76 31
         asd 3236867 .. 3236888 - -11.5  -3.61654   CACAGTCAGCGGAAA           GAGCGGCAC TGTA GCGCCGCCC            CACTGCGCAGGCAAT  77 87
D3880_RS14700 3235769 .. 3235796 -  -3.4  -3.21099   GCTCCCCACCAGCAA        TCC-GCTCGGCCA GTA TTGCCAAGCTAGA        ATATTTCTTCAAATC  45 57
D3880_RS14695 3232769 .. 3232780 -    -3  -2.80113   TATTACTGGATCAGA                CATA GATC TATG                 CGAGACGAGCGATCA  39 21
        truA NONE
D3880_RS14685 3231221 .. 3231248 -    -2  -3.85698   GCTGCCCGTCACAAA        GAG-CAGCGCTAA ACC TCAGTGCTATCTC        AACTCACGGAGGAAG  54 19
        accD NONE
        folC NONE
D3880_RS14670 3228054 .. 3228068 -  -4.2  -2.79796   CTGCATTTTAGCAGA               CCCC TCCCCCC GGGG               TAAGCCGCGGATTAG  43 74
D3880_RS14665 3227494 .. 3227523 -  -2.2  -3.05046   GCATGCCCCTAAAAC       GACAG-TTCAGCT GGGTG AGCCGAAACTACC       CGCGAGCCACTGACC  41 2
        purF NONE
D3880_RS14655 NONE
D3880_RS14650 3223865 .. 3223878 -  -8.1  -2.71731   GGTAGCGCTCAACCA               CCCGA AAGT TCGGG                AACAGGCAGCGAGCG  53 57
D3880_RS14645 3220930 .. 3220959 -  -4.3  -3.14132   TGTTGTGCGCACGAA      TCG-C-GCGCCGG ATGAAG CCGGCACCGTCGA       GCTTAGGGAGATAGG  48 116
D3880_RS14640 3218108 .. 3218127 - -12.8  -5.07486   CACGCCCAACAAAAA            GCCCCGGC AGAT ACCGGGGC             TTTTTGTCACTGCGG 100 46
        gspE NONE
        xcpS NONE
        gspG NONE
        gspH 3211392 .. 3211414 -  -2.7  -2.79302   AGCACCTCCAGCAGA          GTAAAGCCGC GCCC GCG-CCTCAC           CCGGCCCGCCCCGAG  39 22
        gspI NONE
        gspJ NONE
        gspK NONE
        gspL NONE
D3880_RS14585 3207675 .. 3207691 -  -9.4  -4.07885   CAGGCCCGGCCAAAA              GGCACC GCGCA GGTGCC              CAGGCACGCAGAATT  76 62
D3880_RS14580 3207435 .. 3207445 -  -2.4  -2.76189   TAACCGACTGAACTA                 CCGC TGC GCGT                 CGGCCGGACTTACGT  39 58
D3880_RS14575 3207262 .. 3207272 -  -2.4  -2.76189   TAACCGACTGAACTA                 CCGC TGC GCGT                 CGGTTGGACTTGCGT  39 118
D3880_RS14570 3207157 .. 3207182 - -15.5  -5.28942   TACGGCAAAGAAAAA         GCCCCCAGGTA TCGC TACCTGAGGGC          TTTCTAAGATGGCGC 100 35
D3880_RS14555 NONE
D3880_RS14550 3201974 .. 3201991 -  -5.5  -3.73068   CTGCCAAGCGAATAA             CCCCC GTCAGATT GGGGG              CTATTCCGTGGTTGG  60 156
D3880_RS14545 3200352 .. 3200405 - -18.3  -3.13504   CTGCCACCAAAATTA TGCCGCCAACCTCTGACTCAGGACA CTAG TGTCCTGAGTCAGAGGTTGGTTTAA GAGCTGGCGAGTGGA  90 160
D3880_RS14540 3199133 .. 3199148 -  -4.7  -2.87132   CGTTTCGTCGAGACA              GCCAA AGGCGA TTGGC               AGGAAGGCGAGCGGC  44 131
D3880_RS14530 NONE
D3880_RS14525 NONE
D3880_RS14520 3195432 .. 3195445 -  -9.5  -2.88544   GCGCAGCGGCAGACA               GCCGG ACTA CCGGC                GCAGCCGGGCCAGCC  59 18
D3880_RS14515 NONE
D3880_RS14510 NONE
        pepN 3191275 .. 3191300 - -12.7   -5.4833   GCAGGTAACAAAAAA         GTGTTACCGAC ATGG ATCGGTAACAC          TTTTTTGAGAGCGCT 100 304
D3880_RS14500 NONE
D3880_RS14495 3187291 .. 3187310 - -13.6  -5.09762   ATGGCAACACAAAAA            GGCCGCTA TGAA TAGCGGCC             TGCTTGTGGGGCGAA 100 47
D3880_RS14490 NONE
D3880_RS14485 3183625 .. 3183641 - -15.1  -5.71983   TGAAGCATAAAAAAA              CCGCGGC CTG GCCGCGG              TTTTTTACGTGCTGA 100 46
D3880_RS14445 3170146 .. 3170175 - -23.7  -2.91582   CAGCTGATCCACACA       GCAGAACGGCGCC CGTA GGCGCCGTTCTGC        TGGTGCGTTGAGCCC 100 49
D3880_RS14435 3168853 .. 3168888 -  -8.8  -2.78463   AGGGCGGCGATTATA    GCCGCGCGCGCC-GGCC GCA AGCGAGGCGCCGGCGGC    GATCAGTCCAGGCGG  57 28
D3880_RS14430 3167321 .. 3167353 -  -9.8   -3.6053   TTGGTTAGAAATCAA      CTCAGGTTGCAGCC GCAAT GGCCGCAACAGGAG      GCCCGTGACGCCGGC  73 456
       rlmKL 3164477 .. 3164523 - -18.9  -3.55444   GGCGCAGCGCTGAAA CCGTGTAATGAAAACGCCGCCC CATG GGGCGGCGTTTTCATTTT-CGG ACCGTAGGATGGGTT 100 124
D3880_RS14410 3162234 .. 3162262 - -21.8  -3.16177   ATTGCAGAGAGGGAA        CGATGGGCGCGC CGTGC GCGCGCCCATCG        GTGTCACGTCAGAAC 100 177
D3880_RS14395 3158523 .. 3158538 -  -6.8   -3.3785   GCAATTCATCGACAA              CGGCAA ACGC CTGCCG               CGGATGGATATCGAC  56 51
D3880_RS22950 3158104 .. 3158125 -  -2.8  -3.53012   TTTTTCGCCGGCAAA           GGCCGCGG ACTGCG CCGCTGGC            TGCGGATTGGCGCGC  49 181
D3880_RS14370 3155445 .. 3155483 - -21.3   -2.9518   CCTAACAGGGACAGA  GCCATGAAAAAGCCCGCC GATT GGCGGGCTTTTTCATG-C   AGCGCGGCGAACCGC 100 44
D3880_RS14345 3150616 .. 3150630 -  -7.1  -3.16742   CGGAACGGCGAGGAA               CTGGC GCTCG GCCAG               CAAACCCAGCTGCGC  52 123
D3880_RS14335 3148249 .. 3148265 - -10.8  -5.12707   CCAAACCCGAAAAAA              CCCGCC TTCAT GGCGGG              TTTTTTATTGCCTGG 100 62
        moaB NONE
D3880_RS14310 3144870 .. 3144903 -  -8.1  -3.79747   CCAGCTATCAGGAAA     TTCTCGACCAGCTGC GCCA GGAACTGGCCGAGCA      CTACCTGATCCGCAG  66 233
D3880_RS14300 NONE
D3880_RS14295 3140707 .. 3140717 -  -4.6  -4.13767   CGGTGGATGTGAAAA                 GCGG CAT CCAC                 CCTACGCCTTGCCCC  61 40
D3880_RS14290 NONE
        yegS 3137973 .. 3138001 -  -5.9  -3.29043   AAGCCGCCGCGACAA        TGGCACACAGGCA TCA CGCCTGAGTAGCA        GGCATGGCGCCGAGC  52 10
D3880_RS14280 3136909 .. 3136925 -  -2.9  -3.85698   TCCTTGGGGCAGAAA              TGCCGGT TAT ACGAGCA              GCCGGGCGACCGCTC  54 65
D3880_RS14275 3135748 .. 3135762 -    -7  -3.28712   CTCCGCTGCTTACAA               CGCCGG CCC CGGGCG               CGTGCGCCAGTGGCT  54 345
D3880_RS14265 NONE
D3880_RS14260 3131187 .. 3131220 -  -8.7  -2.83639   AACCGGAGTAACAAT     CCGCGGCGAACCGCG CCAG CGCGGTTCGCCTTAC      TCCAGCGAATCGCCC  59 22
D3880_RS14250 3129961 .. 3129981 - -11.1   -3.3854   AAGCAGCATGGAGAA            TGCGCCGCA GAA CACGGCGCA            GATCAAGCAGGAGCT  68 266
        fadB NONE
        fadA 3125463 .. 3125513 - -13.3  -4.77036   GCGGATTATTAAAAA CGACCAGAAATGAAAACCGGGGC ACTCG GCCCCGGCTTTCACACCTCGTTG CGCGTTAGATGCGCT 100 30
D3880_RS14230 3125166 .. 3125186 -  -6.8  -3.07816   TGGCGACTGAGGCAA            GGTCAAGC GCAGG GCTTGCCC            GGTCGACTCTCAGGG  52 35
        topA 3122430 .. 3122456 - -15.1  -2.79302   AGTACGTTCACTATA         CGCGCGCCAGC TGGAG ACCGGCGCGCG         CTTATCCGATTGGGT  77 43
D3880_RS14220 3121797 .. 3121808 -  -4.4  -3.10878   ACGATTTCAAGAAAG                GATG TAGA CATC                 AGAACCTCCAGAAAA  46 97
D3880_RS14215 3121467 .. 3121490 -  -7.4  -4.52589   TGGGTTGACAGAAAA          GCCGAGAG CTCGACTC CCCTCGGC           ACAAGGATGTGCCAC  76 109
D3880_RS14200 3119359 .. 3119404 -  -3.1  -2.54015   AAATGTGCAGAAGAT CGAGAGTGCGCATGGGCGGCTA GCT TAGCCGATCAGGC-CAGCCGCG CCCACCGCCAGGCGG  40 42
D3880_RS14195 3118817 .. 3118827 -  -6.8  -3.48292   ATCCAGCATCAAAGA                 GCCT TGC AGGC                 TTGAAGTCATAACGA  58 45
        nagZ NONE
D3880_RS14185 3116983 .. 3117033 -  -5.6  -3.70811   CCAGACAAGGCGAAA TCGGGCGAAGAA-GCGCAGTTTAC GCGTT GTAAA-TGAGCATTCTGAGCCCGA TTTCAACGCCGTATG  60 71
D3880_RS14165 3108638 .. 3108655 - -12.7  -4.35524   CGGTCAAACGCAAAA             CGGGAGC CGAA GCTCCCG              TTTTGTCATACATAA 100 48
D3880_RS14160 3107393 .. 3107420 -  -9.7  -3.01924   TACTCCTTTTCAACA        GGCCGCGGCGC TTTGGT GCTCCGCGGCT         GCACCACAGCTCATG  60 155
        sthA 3105543 .. 3105568 - -11.7  -4.13945   AGCTGGAGGTCAAAA         GCGCTTCGCGC GAGC GCGCGGCGCGC          ACCGTGCTGGCGATC  82 437
D3880_RS14135 NONE
        lolD 3102259 .. 3102275 -  -2.1  -3.46872   ATGAAGATCGAAAGA              GGCCGGA ACA TCAGGCA              GCCACCAGCCGGCCA  47 19
D3880_RS14125 3100974 .. 3101024 - -22.9  -3.41527   GAAGCGCGACGAGAA CGCAC-CCCATGAAAAACGCCGCT CGTA AGCGGCGTTTTTCATGGGCGTGAA TCACTCGTAACGCAA 100 26
D3880_RS14115 3098027 .. 3098042 -  -2.4  -2.79796   CGCCACTCTAGCATA              GGGAGC GGAT GCCGCC               GACCGCCGCTGTTCT  39 40
D3880_RS14110 NONE
D3880_RS14105 NONE
        lpxK NONE
D3880_RS14095 NONE
        kdsB 3094950 .. 3094965 -    -6  -3.17219   GAGAATGCGCATCAA              GCCCCC AGCA GGCGGC               GGACGCGTTCGAGGT  50 6
D3880_RS14085 3094488 .. 3094499 -  -3.6  -3.39327   CCTGCAGACTCATAA                GCGC TGCC GCAC                 TTCGTCGAGCAAAGC  47 8
        murB 3093380 .. 3093397 - -11.3  -5.25803   AATCCGCACAAAAAA             GGGATGC TCAG GCATCCC              TTTTTTGTTGGCCGG 100 94
        rluC NONE
D3880_RS14065 NONE
D3880_RS14060 3087186 .. 3087207 - -15.9  -4.15066   CACCTATAAATGAAA           GAGCCCAGC CGAA GCTGGGCTC            ATCAGAGACACAGCA 100 44
D3880_RS14050 NONE
        rpmF NONE
        plsX 3084676 .. 3084698 -  -5.4  -4.04206   TCATCGGGAGAGAAA           TGCGCCCAGC CAT GCCAAGCGCG           GCAAAACTGAGAGTT  65 71
        fabD NONE
        fabG 3082771 .. 3082784 -  -2.3  -3.97368   CTCCTAATGGACAAA               TCCAG GCAG CTGGT                CTGTGGGTAAGTGTA  54 180
        acpP 3082444 .. 3082481 - -20.8  -3.53811   TTGATTGCGCTTAAA   GAAAAGCCGCAC-GCCC GGTGG GGGCAGTGCGGCTTTTC   CGAGTCGGGAACCGA 100 54
        fabF 3081151 .. 3081175 -    -5  -2.94144   CGTCGACCCAAACGA         GCATCAGCCGG CAAA CCGACTGA-AC          ACCAGCGAGCCGTTG  45 4
        pabC NONE
        mltG 3079264 .. 3079274 -  -2.4   -3.4214   AGGGTAATAAACAGA                 CCGG TCA CTGG                 CTGTCCTTATTGGTT  47 19
         tmk NONE
D3880_RS14000 NONE
D3880_RS13995 NONE
D3880_RS13990 3076352 .. 3076387 -  -3.4    -2.974   CCAATACTCAAAGTA   CTGGCGTGTGGCATCTC CCCCC AAG-TGCC-C-CGCCAG   GCAAGGTACCGTGGA  42 106
D3880_RS13980 3074337 .. 3074359 -  -2.6  -4.21908   GACGATCATGGAAAA           CTCCGGCG GCTATTA CTCCAGAG           TATATCCCCGCCACC  60 77
D3880_RS13975 3073373 .. 3073384 -    -3  -3.18264   CGTTTTAGCCACCAA                TGAT TTTC ATCA                 CCGTGACGCCACCGG  43 3
D3880_RS13970 NONE
D3880_RS13965 3072046 .. 3072075 - -16.7  -3.83006   ACATGTAAGCAAGAA       TAAAAAAGGCTCC CGAG GGAGCCTTTTTTA        TTTCAGTCGGGCTGC 100 28
D3880_RS13955 NONE
D3880_RS13950 3068308 .. 3068324 - -13.7  -5.24129   CCGGCCCACAAAAAA              CCCGCTC GAT GAGCGGG              TTTCTTGTCTTACGC 100 52
D3880_RS13940 3066327 .. 3066352 -  -2.4  -2.66692   GATCATTAGCACAAC         CCGCCAGCGCC GCGAA GGC-CAGGCCG         ATCGCCGATATGCGT  38 62
D3880_RS13935 NONE
D3880_RS13930 3065169 .. 3065193 - -12.2  -5.79595   CTGGAAAACAAAAAA         CCCTGG-CACC TTGC GGTGACCAGGG          TTTGTATTTGCCGCC 100 45
D3880_RS13925 NONE
D3880_RS13920 3061378 .. 3061403 - -19.1  -5.00616   TCGGTGGCGAAAAAA         GAAACGGCGCC CCAG GGCGCCGTTTC          TGTCGTTTGCAGGTT 100 40
D3880_RS13915 3060507 .. 3060523 - -10.8  -2.95491   AAAGCTGAGTATAGA              GGCGCG CCTCC CGCGCC              CGACGGCGCGGCAAC  62 72
D3880_RS13910 3057395 .. 3057411 -  -7.9  -3.60627   GCAGGCGACCGTAAA              TCCCGGC CCG GCCGGCA              CCTATGCGATTCAGG  64 240
D3880_RS13905 3056555 .. 3056583 - -16.1  -4.11394   AGCCGATCCTGAAAA        CAAAAAGGGCGCC CGA GGCGCCCTTTTTC        GTTTCCCGGCCTCAG 100 37
D3880_RS13885 NONE
D3880_RS13880 NONE
        sixA 3050417 .. 3050432 -  -6.8  -3.15999   TTTGGAGACAGTCAA              CCAAGC ACTT GCTCGG               TCGAATATTCCATGC  54 104
D3880_RS13870 NONE
D3880_RS13865 3048222 .. 3048255 - -10.9  -2.84325   TGCGGCCAAAGATCA     TGACCGGCGCGATCCC GTT GCG-CCGCGCCGGTCG     GGCGATCAGGCCTTG  66 31
D3880_RS13860 NONE
D3880_RS13855 3046401 .. 3046434 -  -4.5  -3.53224   GAGGCGCTCCGGAAA     CGATCAGGCTGGATCA ATC CG-TCCAGCCTTGCCG     TTCGGCCGGGGCGCG  52 41
D3880_RS13850 NONE
D3880_RS13845 3044772 .. 3044786 -  -2.8  -3.84185   TCCATGCAAAGAGAA               TTCATC AGT GGTGAA               TCGAGGGCCGGCGGT  52 147
D3880_RS13840 3043331 .. 3043346 -  -4.6   -5.1361   AGAAAGCGTAAAAAA              CCGCTT TAGG ATGCGG               CTACGCCAGCAGGCA  83 335
        kdpF NONE
        kdpA NONE
        kdpB 3039227 .. 3039263 -  -4.4  -3.05596   CAGGTTTGCACCGAA   TCAGT-CCCCTCTCCCA CTTG TGGGAGAGGGTTAGGGA    GAGGGGCTTTTGCGT  46 113
        kdpC NONE
D3880_RS13815 3035866 .. 3035882 - -13.7   -3.5594   AATTCATTCGCGAAA              GCAGGCC GAC GGCCTGC              CCTGCCGCTATCACT  86 104
D3880_RS13810 3034686 .. 3034701 -  -6.8  -3.63515   CCCCAGTCGCAACAA              CCGGTCG CCG CG-CCGG              AAAGCGAAGGGGCGC  61 350
D3880_RS13800 3033367 .. 3033397 -  -8.9  -3.06501   TACAGGGCCAGTGAA       CGATGCACCCCTC TCTTC GAGGGGCGCTTCT       CATCAGCGCCCGGCG  60 28
D3880_RS13790 3032113 .. 3032133 -  -7.5  -2.73124   CGGCACGCGGCAAAG            CGCCGGCAA CCT TTGCTGACG            AAAGCGGGACACGGT  50 261
D3880_RS13785 NONE
D3880_RS13780 NONE
D3880_RS13775 NONE
D3880_RS13770 3027309 .. 3027324 -  -3.2  -2.71924   CATTGTCGCGCAAAC              TTGACC TCGA GGTCAC               CTTTGCCGGATGGGT  41 59
        tusA 3026930 .. 3026940 -  -8.2  -3.18582   GAGCGCAGCGACGAA                 GCCC AAC GGGC                 GGCGGCACTCCCAAC  57 100
        pdxB 3023710 .. 3023720 -  -6.8  -4.10459   CATAAGACCAAACAA                 CCAG TCG CTGG                 CACAGAGCCTGCTTC  68 421
D3880_RS13750 NONE
D3880_RS13745 NONE
D3880_RS13740 NONE
D3880_RS13735 3019833 .. 3019870 - -12.1  -2.94218   AGGGCGGATCACAGA   CCTCTGGTGGAAAA-CGC TAC GCGGTTTTCCACCCTAGG   CCTCGACGGCACCGA  70 21
D3880_RS13715 3016195 .. 3016222 -  -2.8  -2.79183   CCGACGCGCAGCAGA        TCGTAAACAG GCTCTTAT CTGTTCACAA         CGCGCCCACTCGTAT  39 500
D3880_RS13705 NONE
D3880_RS13700 3013565 .. 3013579 -  -3.5  -4.37711   GGATGAAACCGAAAA               TGCGC CGATC ACGCA               GCTGTCGCCTGCTCT  65 19
D3880_RS13695 3012872 .. 3012890 - -11.7  -5.36441   GTCGGACACAAAAAA             GGCTGCC TATTT GGCAGCC             TTTTTTCGTTTCTGG 100 51
        sdhC NONE
        sdhD NONE
        sdhA NONE
D3880_RS13670 3007885 .. 3007915 - -17.6  -3.40522   ATGCTCCGACTAGAA       CTGCGGCGCCCGAA CCA TTCCGACGCCGCAG       GTGTTACAGGTATTA  93 51
D3880_RS13665 NONE
        odhB 3003546 .. 3003570 -    -7  -2.52946   TTCTCGGATAAAACC          GGGCGGCCCC TCGTG AGGACCGCCT          TTGTGCAGCTGACGG  48 42
        lpdA 3002045 .. 3002070 -  -3.9  -3.72893   GAGCCTTCGAGGAAA         GCTCACGACGGG CCA CCCACCGTG-GT         TCTGGGGTTTGCCTT  54 39
        sucC NONE
        sucD 2999832 .. 2999861 - -20.9   -4.3739   CATCGGGCCAGAAAA       CACAAAGGCCACC CGTA GGTGGCCTTTGTG        GCAATCAGGCAGGCT 100 40
        brnQ 2998242 .. 2998257 - -11.8  -5.06414   GCCGCGCAACAAAAA              GCCGCC CGAA GGCGGC               CTTTGGCAGGAGAAG 100 44
D3880_RS13635 2997433 .. 2997449 -  -2.9   -2.7709   AATCAACACACACCA              GAACGGG ATG CTCATTC              GTTTTTATCCTTGAG  39 20
D3880_RS13630 2996990 .. 2997018 - -15.4  -3.53224   GATTGCCTCCTGAAA       GCACAAGGCCCGC ATTT GCGGGCCTTGT-C        GTTATGGTGATGGGC  93 44
D3880_RS13620 NONE
D3880_RS13615 NONE
D3880_RS13610 2994195 .. 2994208 -  -3.8  -4.56597   CGCGCCGCGCAAAAA               CAGG CCCATC CCTG                CGGGTTGCGCGGCAA  68 185
        htpG 2992039 .. 2992070 - -19.6  -3.87815   GGTTAGGCCCAGAAA      CGAAAAAGGCCCGT CGAA ACGGGCCTTCTTCG       GCTAGCTGCACGGTC 100 39
D3880_RS13600 2991076 .. 2991120 - -12.1  -2.73797   AGTCACAGAAACCTA GAGCGGGTGCAACCCGC CAAGACTGCAC GCGGGCTACCCCCGCCC TACCCGGCTCAGCCT  69 73
D3880_RS13590 2988626 .. 2988636 -  -3.2  -2.65774   CAGACTGATGACAAC                 CCTA GTG CAGG                 CCCTGCTCGCGCACC  40 16
D3880_RS13585 2987819 .. 2987830 -  -5.8   -4.1964   CCGAACACCCGAAAA                GTGC ACCG GCAC                 AGTTGCCAGGATTGT  68 294
D3880_RS13580 2986266 .. 2986295 - -15.9  -2.52676   GATCGGGTTAACGTA       GGGTGGAAAACCGC GAA GCG-TTTTCCACCC       ATCGTCCGTCGCGGC  78 67
D3880_RS13575 NONE
D3880_RS13570 NONE
D3880_RS13565 NONE
D3880_RS13560 2982480 .. 2982494 -  -2.7  -3.67413   GCCAGTAACAAAAAT               CGCAG GCCAG CAGCG               CAAGCTCGCTACAAC  49 51
D3880_RS13555 2981694 .. 2981716 - -11.2   -4.1822   GCCGACCTGAAGAAA           GCCGCCTACG ACC CGCAGGCGGT           GCATGAACCGCTCTA  89 291
D3880_RS13510 2969055 .. 2969068 -  -3.1  -3.28522   AACCCACTACAAAAG               CGGTGC TCG GCAC-G               TAGCAGACCCTAACG  47 52
D3880_RS13480 2951636 .. 2951669 -   -24  -5.06414   TCGGCGGAATAAAAA     TGCGGTGTGGGGCG GCTAGT CGCCCCACACCGCA      ATAGCTTATGCCTTG 100 60
D3880_RS13475 2950357 .. 2950368 -  -4.4  -2.62463   TTCACTATCCACAAC                TCCA ACTG TGGA                 CTTTTCATCCTGATT  43 70
D3880_RS22890 2950021 .. 2950046 -  -5.3  -2.76696   TCGCCGGTTAACAAC         TGCTCGAAGCCC AGC GGGCTGCG-GCC         TTGTTTGACCCGCTT  46 40
D3880_RS22885 NONE
        rfbB NONE
        rfbA 2947571 .. 2947600 -    -3  -3.42503   CCCTAATATTTAGAA       GTTATTTAATCT TACTTT AGATTAACCAAC        GATAATAAATATTTA  47 7
D3880_RS13455 NONE
D3880_RS13450 NONE
        rffA NONE
D3880_RS13440 NONE
D3880_RS13435 NONE
D3880_RS13430 NONE
D3880_RS13425 NONE
D3880_RS13420 2939625 .. 2939638 -  -3.8  -3.23216   CCCCACTACTAGCAA               GCTC CCTCAT GAGC                CTTGAGTATACTTCA  45 18
D3880_RS13415 2938274 .. 2938285 -  -3.6  -4.40652   AAGCAGATAAAACAA                CAGC GTGC GCCG                 AGGATGGCGCCCCTA  65 313
D3880_RS13410 2937043 .. 2937055 -  -6.2  -3.77953   TTAACAACCCAATAA                GCGG ATCTG CCGC                AACGCAGTTAATCTT  60 201
D3880_RS13405 2934891 .. 2934903 -  -7.7  -4.74132   AGAGGGGAGGAAAAA                TGCGT TCT ACGCA                GGGGGAGACTTCTTG  91 124
D3880_RS13400 2928023 .. 2928051 - -20.4  -5.80951   ACCGAAAAGAAAAAA        CGGTGTGCGACG CGACT CGTCGCACACCG        TTCCAGGACGCTCAC 100 64
        pyrF 2927194 .. 2927220 -  -7.9  -4.96848   CGCCCTACAGAAAAA         GTTTCGGCCCC TGAAC GGGGCCGAATT         TTTACGCCAGCTCGG  93 27
D3880_RS13385 2924857 .. 2924872 - -11.8   -4.8066   AACAGAATGCAAAAA              GGCGCC GGGT GGCGCC               TTTTCTTGCACCTCA 100 38
D3880_RS13380 2923825 .. 2923854 - -12.9  -4.72986   CACGCCCAGCAAAAA       CAATAAAGGCGCC TCTC GGCGCCTTTGCTG        CTCAAGCCTCGGCGG 100 27
D3880_RS13360 NONE
D3880_RS13355 2919325 .. 2919339 - -12.8  -5.24129   CGCGGGCAGAAAAAA               CCGGCC AGC GGCCGG               TTTTCTGTCCTGCAG 100 142
D3880_RS13350 2918863 .. 2918878 -  -8.2  -5.26875   GCTGCAACGAAAAAA              CCGGCC TCTG AGCCGG               TTTTTTCGTTTCAGT 100 36
        prmB 2915004 .. 2915017 -  -8.1  -3.41229   ACAGGCCGATCACAA               CCTGC AGGA GCAGG                AGACGAAGATCCGCA  59 252
        aroC NONE
D3880_RS13305 NONE
D3880_RS13300 NONE
D3880_RS13295 2909559 .. 2909609 - -12.5   -4.4009   GGCCACCCTACAAAA CGCCTCTCTCCCCCGGCCCCTCT CCCGT AAACGGGCGAGGGGAGCAAAGCG GCCGGTATGCGGACT 100 106
        mtnC 2908441 .. 2908459 - -11.6   -3.6608   ATCAGGCGAGCCAAA             GCCGGCCC ATG GCGCCGGC             TTCGTGGTTATCGGG  77 349
D3880_RS13285 NONE
        speB 2905773 .. 2905816 -  -8.1   -3.4052   GGTGAACTGAACGAA GCCTGCCGCCAGCTCGACCA GTATT TCGCCG-GCCGACGGCAAAC CTTCGAGCTGCAGCT  59 498
        speE 2903669 .. 2903685 - -10.8  -5.24531   AGTCGGCACAAAAAA              GCCCGC ACTCG GCGGGC              TTCTTGTTTCAGGCG 100 47
D3880_RS13260 NONE
D3880_RS13255 2899742 .. 2899774 -  -2.6  -2.87132   CGCTGTCGGCACAGA     TCCCTG-GCAGGTTG CTCC CGCCCTGCCCAGGCA      ACCAACTGCTCTGCC  40 41
D3880_RS13235 NONE
D3880_RS13230 2894541 .. 2894562 - -11.5  -5.08824   TGCTCAGGCAAAAAA           GAAGGGGCC TTGC GGCCCCTGC            TTTTACTCACGCGTC 100 28
D3880_RS13215 NONE
D3880_RS13210 NONE
D3880_RS13205 2889498 .. 2889513 -    -9  -3.67597   GGTGCCACCCAAGAA              TCAGGC CGAC GCCTGA               TCACAGAACAACCGG  68 176
D3880_RS13200 2888880 .. 2888894 -  -2.9  -3.44146   GTGCGTGAGAATCAA               GATAT CGGTC ATATC               TGAACTACCTCCCTG  47 188
D3880_RS13195 2888169 .. 2888179 -  -6.8  -3.63895   CCCAATGAGCTGAAA                 CTGC CTC GCAG                 GCTAGCGCGCAAACG  60 27
D3880_RS13185 NONE
D3880_RS13180 2882916 .. 2882933 - -14.1  -5.83822   CATAGCCAAAAAAAA             CCGGCCC ATGA GGGCCGG              TTCTTCATGGCTCCG 100 47
D3880_RS13170 2881271 .. 2881287 -  -9.4  -5.36441   GCCGCACAGAAAAAA              GCCCGA GCGAA TCGGGC              TTTTGCATTTCTGTC 100 48
D3880_RS13160 2879186 .. 2879204 -  -4.4  -3.04461   GACTCAGGTGCAATA             TGTCGTGG TAG CCGCGCCA             CGCTGAGGTGCTGGA  46 98
D3880_RS13135 2876648 .. 2876672 - -10.8  -5.42514   CCAGAAAGCAAAAAA         CCCCTGAG-GA TTGC TCTCTCAGGGG          TTTCGCGAAAGTGGC 100 37
        earP NONE
         efp 2874738 .. 2874768 - -18.4  -3.97406   GCAAAACGGCAGAAA       CGAAAAAGCCCGGC AAT GCCGGGCTTTTTTG       TCGCATCGAAGGCTT 100 39
D3880_RS13110 2872984 .. 2873008 -  -7.8  -3.65902   CGCAGGTCACCGAAA          CCCTCGCCGA GCATA TCGCCGAAGG          CTTTCGGATCTGATC  64 46
D3880_RS13100 2871788 .. 2871809 - -15.9  -3.90744   CCTTCCTTGAAAGAA           GGGCATCCG GCGC CGGATGCCC            AGATAGAACAATTCA  95 38
D3880_RS13095 NONE
D3880_RS13090 NONE
D3880_RS13085 2869097 .. 2869122 - -12.7  -2.72144   CCACCGCGGCCAAAC         GGTGGACAA-GC GAA GCGTTGTCCACC         CTACGCCAACAAAGG  69 26
D3880_RS13060 2863504 .. 2863516 -  -6.2  -3.36878   GCCAGCCATCTACAA                CGGG CATTT CCCG                GGAAGTGGCAGCGTA  52 92
D3880_RS13055 2861063 .. 2861106 - -11.6  -3.08996   GATGGCCAGCGAAGA CGCCGAGGAAGGCGTGCGTGC CAT GCAGGAACGCCGTCC-CGGGG TATTCAAGGGGCGTT  68 181
D3880_RS13045 2858233 .. 2858251 - -13.1  -5.27938   ATGGCCAAACAAAAA             GCCCCGC ACTAG GCGGGGC             TTTTTCATTAGCGCG 100 47
        msrB 2853641 .. 2853666 - -11.9  -4.34267   TTATATAAGCCAAAA         TAAGGCCCGCC CATG GACGAGCCTTA          TCGCCGCGCCTAGAA  93 233
D3880_RS13015 NONE
D3880_RS13010 2852285 .. 2852296 -  -5.8  -3.34192   AACCCGGTGAATCAA                CTGG TCGC CCAG                 GGCATGCTGCGCAAG  51 333
D3880_RS13000 2849156 .. 2849166 -  -8.2  -3.16742   GCCAAGGGCGATGAA                 GCGC GCA GCGC                 GGACGCGCTGCTAAC  57 161
D3880_RS12995 2847465 .. 2847477 -  -3.3  -3.02096   TGGATCAACGATAGA                CCGGA AAG TCCGC                ACACAGCCCGGCGAC  43 2
D3880_RS12990 NONE
D3880_RS12985 NONE
D3880_RS12980 NONE
D3880_RS12975 2841768 .. 2841784 - -13.7  -3.68222   TGCGAAGCCCAACAA              GGAGCGC AAC GCGCTCC              CTGCTGCTCACCAGG  88 119
        purU 2840780 .. 2840801 - -14.5  -3.05596   GATGGGTTGAGCGAA           GCGATACCC ATCT GGGTATCGC            AGGCTCAACCCATCC  80 47
        fdhA 2839300 .. 2839320 - -16.9  -6.11644   CGAGGCAAAAAAAAA            GAGGAGCCC GGG GGGCTCCTC            GAGGGGGTGACGCCG 100 89
D3880_RS12950 2833446 .. 2833466 - -18.3  -5.64421   AGCGCAAACAAAAAA            GCCCGGTCC ACT GGACCGGGC            TTCTTCATTCCAGCT 100 51
D3880_RS12915 2825459 .. 2825487 -  -3.1  -4.07568   CCGGGTTGGGCAAAA       GCGGTTCAGCAC TCGATG GCGCTGA-CGGC        CAGGCCGCCGCGCGA  59 2
D3880_RS12910 2823527 .. 2823573 -  -2.8  -3.61398   GCGCCTGCTCAACAA CCTCGGCGATACCCCGGC-CA CCCGGC TGCGCCAGGTCGGCGCCGAGT AACGGAATCGGGAGC  49 407
        gbcB 2820771 .. 2820787 -  -2.9  -4.07568   CTGCGCCGGCCAAAA              CGGCA ACCTAAG CGCCG              CCAAGTACGCCCGGC  57 62
D3880_RS12895 2819992 .. 2820002 -  -2.4   -3.9122   GAGGCTCTGAAACAA                 GGCG CTG CGAC                 GAGTCATAGTCCGCT  54 258
D3880_RS12840 2809467 .. 2809488 -  -4.3   -4.3208   GGGTACAACTGAAAA           TGGCGTCCC CTAG GGGACTCGA            ACCCCTGTTACCGCC  68 4
D3880_RS12835 2809327 .. 2809343 -  -4.4  -3.93236   GACGAAGGGGACAAA              CAACGC AACCG GCATTG              CTTGGTAAATTGGAG  59 36
D3880_RS12830 2809248 .. 2809269 -  -4.3   -4.3208   GGGTACAACTGAAAA           TGGCGTCCC CTAG GGGACTCGA            ACCCCTGTTACCGCC  68 4
D3880_RS12825 2809104 .. 2809122 -   -16  -5.38958   AGGCAGAAACAAAAA             CGCCGCTC AGT GAGCGGCG             TTTTTGTGTATTTGG 100 38
D3880_RS12810 NONE
D3880_RS12805 NONE
D3880_RS12800 2802944 .. 2802970 -  -7.8  -3.57144   CGGCTTAGCCGCAAA         CGTCGGCGGCGC CCT GCGCCAGCGCCA         TCAGGCCTGCGCCTC  64 378
        gstA 2801744 .. 2801767 -  -5.3   -3.8512   CAGCCACTACAACAA          CG-TGCCGCA AGAGG TGCAGCAACG          GCTGGCGTCCGCCTA  60 307
D3880_RS12780 NONE
D3880_RS12775 NONE
D3880_RS12770 2794622 .. 2794643 -  -9.3  -2.71144   GACGGTGGCCAATCA           GGGGGCGGA GATT CCCGCCGCC            CAGCTGCCACGCCTG  55 362
        queF 2786580 .. 2786609 - -23.7  -3.53444   GCAGCGCGCCCTAAA       CGACAACCCCGGC TCAG GCCGGGGTTGTCG        TTTATATCAAGACGG 100 55
D3880_RS12705 2784083 .. 2784098 - -11.8   -4.0162   TGCGGATATGACAAA              GGCGGC CGAG GCCGCC               TTTGTCATATCTGGA  84 53
D3880_RS12695 NONE
D3880_RS12690 2781798 .. 2781834 - -22.4  -4.56597   CGCGGCCCTGAAAAA    CAAAGCGCGCGACACC TGCCG GGTGTCGCGCGCTGTG    ATTTAGCGGCTATTA 100 46
D3880_RS12675 NONE
D3880_RS12670 2777865 .. 2777889 -  -7.8  -2.56095   GCCAGAGCGAAGCCA         GCCGCGCCGCC GCCG AGCAG-GCGGC          GATCCGCTATCGCGA  50 255
D3880_RS12645 2769668 .. 2769693 - -12.5  -3.15056   AGCGGGAATCCAATA         GCCCTCCCCCG TAAA CGGGAGAGGGG          GCATACCGTATTTCA  74 38
D3880_RS12615 NONE
D3880_RS12610 NONE
        lpdA 2760739 .. 2760768 - -10.7   -5.4833   CCAGGCAATAAAAAA       CCGGAAGACGATC AAAA AACCGCCTCCCGG        TTATGGGCAGGTCAG 100 47
D3880_RS12580 2755259 .. 2755300 -  -2.3  -2.60075   TGCGCTCTAACCAAC TGAGCTACAGACCCAATCGT CTC ACTCTCGGGTCTA-AACCCA ATCGCTTTTTCGCAA  38 92
D3880_RS12575 NONE
D3880_RS12570 2754708 .. 2754723 -    -9   -3.2059   ATTCAGTACAAGATA              CCTAGG TTAT CCTAGG               TGGGTTCCCCCATTC  61 392
D3880_RS12560 2752461 .. 2752502 -  -2.3  -2.60075   TGCGCTCTAACCAAC TGAGCTACAGACCCAATCGT CTC ACTCTCGGGTCTA-AACCCA ATCGCTTTTCGCAAG  38 91
D3880_RS12555 NONE
D3880_RS12550 2752229 .. 2752271 -  -3.5  -3.54543   AGTTACTGGCGCAAA GACCAGAATTCAAGGCTCA CTCTT TAAGCATTCAATTCTGAGC TTTCAGCGATTGCGT  49 46
D3880_RS12545 2749140 .. 2749153 -  -5.3  -2.74192   CACCGTCCAACACCA               CAATC GTCA GATTG                TTTGGGTGTTATATG  46 38
         rrf 2748857 .. 2748892 - -23.4  -3.34398   TCCCGCGCGCAAAGA    CAAACCCCCAGCCTGC TGTC GCGGGCTGGGGGTTTG     GGATAGGAGCTTGAC 100 34
D3880_RS12525 NONE
D3880_RS12520 NONE
D3880_RS12515 NONE
D3880_RS12510 2744276 .. 2744309 -  -5.1  -3.54129   GATATCTTGGTGAAA     TATGCCCGCGCGCTG AAGC CAGTGCGCGAGTCCA      TCGACATGGGCAACC  54 105
D3880_RS12495 NONE
D3880_RS12490 NONE
D3880_RS12485 NONE
D3880_RS12480 2736273 .. 2736302 - -19.5  -4.57341   AAGCCTCGCGAAAAA       CAAAAAACCCGGC CTAG GCCGGGTTTTTTG        TGTCTATCAGAAACT 100 160
         icd 2708057 .. 2708077 - -16.9  -5.37043   ATTTGACATAAAAAA            GGCCGGTCA ATT TGACCGGCC            TTTTTCTTGCCGCGG 100 47
        clpS NONE
        clpA 2704826 .. 2704869 - -21.2  -3.17075   CGCGCGCTAAGCCAA TCCAAACAAAAACGCCCGGC ATCT GCCGGGCGTTTTTGTTTGTC TCTTGTACCGCTAGA 100 36
        ftsK 2699249 .. 2699267 -    -6   -3.8186   TACGGCAATCAACAA             CATGCG GATCAGG CGCATG             AAAGTCCTCTATCGG  60 202
        lolA NONE
D3880_RS12310 NONE
        crcB NONE
        serS 2695595 .. 2695614 -  -7.8  -3.91911   GCCAGGGCAAGCAAA            GGGGCAAA TTGG CTCGCCCC             TAGCTCAATGGCCTC  69 39
        cysG 2693686 .. 2693711 -  -6.1  -3.61398   TCCGGCGGTCAACAA         CGGCGTATACCG GGC CGG-ATTCGCCA         CCACACAGGATGCGT  56 472
D3880_RS12255 2689507 .. 2689521 -  -4.9  -3.59979   TCTTCGCAGGTCAAA               GCCGC TCCCT GCAGC               GGTCTTATTGGTTGT  54 150
        uvrY NONE
        uvrC NONE
        pgsA NONE
D3880_RS12235 2686243 .. 2686263 - -14.7  -3.66908   CGGCCTCAAAACGAA            GACGCCGCA ATC TGCGGCGCC            AACGTCAACAAATTG  90 39
D3880_RS12230 2686123 .. 2686149 - -17.4  -5.42975   CCAGACAAACAAAAA         GCCCCGTAAATC AAT GATCTACGGGGC         TCTCTATAATGGAGG 100 34
D3880_RS12225 2685838 .. 2685871 -  -3.8  -4.68103   GGAAGGGTAAGAAAA     TCACTCTGACCCGC TGAGTT GCGGACCAAAGCCA      GAATTGCGGACCATC  70 79
D3880_RS12215 2683002 .. 2683020 - -13.8  -4.54727   GGCCTTAAAGCAAAA             CGCCCGGC ATG ACCGGGCG             TTTTTTCGAAGCGCT 100 51
D3880_RS12210 2682211 .. 2682223 -  -3.3  -5.02476   ATAGCCCGGAAAAAA                CCGCC AAG GGCAA                GCCTGCACCCTACCC  80 35
D3880_RS12205 2679303 .. 2679322 -  -8.5  -4.30978   TTCAATTTAGCAAAA            GCCCGAC GTGGCG GCCGGGC             TTTTTTAGATCGTTT  77 295
D3880_RS12200 NONE
D3880_RS12195 2676597 .. 2676618 -  -5.9  -3.47928   AGACTAAGGCAAACA           GTGGAACAA GGCC TTCTTCCAC            GAAGGCGAAGCGATC  55 381
        galU 2668606 .. 2668635 - -22.3  -3.61654   GATACCCATCGGAAA       CGACAAGGCCACC CGCA GGTGGCCTTGTCG        CTGAACCGCAAACGT 100 42
        gorA NONE
D3880_RS12145 2665875 .. 2665906 - -24.6  -3.28712   TCGCGCCCGCCATAA      CGACAACGGCCACC CTGG GGTGGCCGTTGTCG       TTTCAGAGCAAGCTC 100 184
D3880_RS12125 2660905 .. 2660956 - -12.3  -2.64155   CCTGCGGCAAACCCA GTGAGCTCC-GGCCCGGAATGAGCC CCGC GGTTCATTCCGGGCCTAGGGCGC-C GCTATCCGATCCAGG  68 171
        hutC NONE
D3880_RS12050 2640958 .. 2640971 -  -3.8  -4.56597   CGCGCCGCGCAAAAA               CAGG CCCGTC CCTG                CGGGTTGCGCGGCAA  68 166
        hutU NONE
        hutH 2633340 .. 2633374 - -23.6  -4.07568   TTTGTCGGGCGAAAA     GCCGTGCGCAGCCCGC GAG ACAGGCCGCGCACGGC     AATTGGGTCGGGCCG 100 70
D3880_RS12015 NONE
        hutI NONE
        hutG 2629382 .. 2629394 -  -4.7  -4.18197   ACTTGGGACGCAAAA                GGCGC CAG GAGCC                GTGATTTATGCTCCT  65 494
D3880_RS22755 2627593 .. 2627619 - -19.6  -3.21099   CGTGCGCACCACGAA         GGAGTCGCAAAC CCC GTTTGCGACTCC         CAGTTGATGCGTCCC  91 109
D3880_RS11990 NONE
D3880_RS11985 2624932 .. 2624945 -  -3.8  -2.54192   CACATCACGATCAAT               GCCA TTACCC TGGC                GGAAACTTCATAGAG  40 146
D3880_RS11980 2624046 .. 2624057 -  -5.8  -3.86283   CCAAGCGAGACCAAA                CAGC TAAC GCTG                 ACGTGCTGCGCTATA  62 100
D3880_RS22750 NONE
D3880_RS22745 2620749 .. 2620760 -  -2.2  -3.93782   TGAGCTAAGATTAAA                CTGA CTCC CCAG                 GCATCAACACTTGAG  54 9
D3880_RS11975 2619708 .. 2619722 -  -2.2  -4.16842   TTGAGTGTTAAGAAA               TTTAAA ATT CTTAAA               TTACAAATTATACTG  60 90
D3880_RS22740 2618215 .. 2618227 -  -2.6  -4.57569   TTATCTCGGTAAAAA                CGGC TCGAC ACCG                GAGTGCATTGCCGCG  70 236
D3880_RS11950 2614953 .. 2614965 -  -3.3  -4.03978   AAGGCCGTAGATAAA                CCGAC TCC GCCAG                CGAAAAGCAAAGTTG  59 131
D3880_RS11940 2612732 .. 2612751 -  -4.2  -3.75437   AACGAGGCGATCAAA            GC-CACCGC CAA GCGCTGCGC            CAAGCAACTGCCGCG  54 135
        ilvD 2609896 .. 2609927 - -15.4  -3.29144   CGAGGGTGTGCAGAA      TTTCGTGTAAACGA AACC CCGTTTACACGAAA       TTCTGCACACCCTCT  89 221
D3880_RS11920 2606773 .. 2606789 -  -2.1  -4.36914   CCCCTCGGCAGAAAA              CTCGGTG CTG CCCCTAG              GGCTGGCAGCTTTTG  63 179
        tcuA NONE
D3880_RS11910 NONE
D3880_RS11905 NONE
D3880_RS11900 NONE
D3880_RS11895 NONE
D3880_RS11890 2598775 .. 2598805 -  -5.2   -3.0634   AACTGCACTTCAACA       GCACGGACGCCCTG ATC CAGGCCGCACTCGC       CGATCAGGGCTACAT  47 291
D3880_RS11880 NONE
D3880_RS11875 2595818 .. 2595835 -  -3.3  -2.70932   GCTTGGGTTGAATCA             GTCGCACC AGA GG-GCGCC             GTTGACGTCGAGAAT  41 5
D3880_RS11870 2595133 .. 2595159 -  -5.2  -5.80364   AGCCTAATAAAAAAA        GCCCGA-CATA GTGATT CATGGTCGGGC         TGCAAATCATGCTCC 100 59
D3880_RS11865 2593499 .. 2593530 -  -8.6  -4.07687   ATCCGTCTGCCAAAA      GGCGAGCCAGCCGCC GTC GG-GGCTGGCCAGCA      AGAGAATGCCAGCCA  72 245
D3880_RS11855 2590539 .. 2590552 -  -8.1  -3.55622   TCCAAGTCGGGCAAA               CGCTC AGGA GAGCG                GATGCTCCTCGGTTT  62 15
D3880_RS11850 NONE
D3880_RS11845 NONE
D3880_RS11840 2587774 .. 2587802 - -15.9  -3.64703   TTGTTTTTATTTAAA        GCGCTGCCGGAGC CTG GCACCGGCAGCGG        GTGTTACAGCGAGAA  93 62
D3880_RS11835 NONE
D3880_RS11830 NONE
D3880_RS11825 NONE
D3880_RS11820 NONE
D3880_RS11815 NONE
        dmpE NONE
D3880_RS11805 NONE
        dmpG NONE
D3880_RS11795 2576813 .. 2576835 - -15.6   -5.4492   GATACAGATAAAAAA           GGGGGAGGCA ATC TACCTCCCCC           TACGCGTGACGCCTG 100 50
D3880_RS11790 NONE
D3880_RS11785 2573710 .. 2573732 - -11.2  -3.37245   CTACCTGAATATCAA           CGGCGACCAG CGC CAGGTCACCG           CCACCGGCCACAACA  68 492
D3880_RS11775 NONE
D3880_RS11770 2569740 .. 2569755 -  -2.6  -3.48395   AGGTGCTGCAGAGAA              GCGTTTC TAC GAAA-GC              CAGGTACCTTTGGGG  46 182
D3880_RS11750 NONE
D3880_RS11745 2565658 .. 2565668 -  -2.4  -3.64703   GCGCCGGCACGCAAA                 GGGG TCG CCCT                 GCGCCATTGGTCGAT  49 61
D3880_RS11740 NONE
        livM NONE
D3880_RS11730 NONE
D3880_RS11725 2561840 .. 2561857 -  -4.7   -3.3482   GAAGCGGTCAAGCAA             GTGACCG AGCG CGGCCGC              CTGTTGCCGAGGTGG  49 340
D3880_RS11695 NONE
D3880_RS11690 NONE
D3880_RS11685 NONE
D3880_RS11680 2549161 .. 2549171 -  -2.4  -3.53224   GAGGTGCTTTCGAAA                 GCGG AAG CCGA                 GAATTATGCGCTAAG  47 236
D3880_RS11670 2547580 .. 2547592 -  -3.4  -4.07568   GCTCTCTTGGGAAAA                CCAT GAAAG ATGG                AGCTCGCCTCGCTGG  59 292
D3880_RS22945 2546786 .. 2546798 -  -3.3  -3.53811   CTCAGCCGCGCCAAA                TGCGC CAA GCGGA                ATATCTCCAACTGGA  49 207
D3880_RS11655 2545683 .. 2545694 -  -2.2  -3.20432   AGAGAGCGAAGCGAA                CGAT TTGA ACCG                 CTTATTATACCTAGG  43 36
D3880_RS11650 2545069 .. 2545085 -  -4.3  -2.87211   ATGGGGTTCTACAGA              GTGGCCA GGG CGGCAAC              GCCCACAACAGGCCG  45 122
D3880_RS11645 2544428 .. 2544467 -  -5.7   -4.8667   CAGATGGGACAAAAA  CAG-GACGGCCATGGG ATGGTTTTA CCCATGACCGACGCCG  AGCGCGCCACCCACC  84 258
D3880_RS11605 2533608 .. 2533663 -   -11  -3.36327   TCACGGCACCGACAA GGCGGTGAGAGCTGCAGCACTGCGCTG TGC CAAAGCAGTGCCGC-GCAAGGACCGCC AGCTCCTGTTTAACG  72 142
D3880_RS11590 2531351 .. 2531390 -  -2.9  -2.88667   GGCTACAAAAATTTA  GGGC-TCCTGTGTTCG GAATTTTAT CGACCACAAGATACCC  GTTCCTACCGCAGCG  40 245
D3880_RS11585 2530925 .. 2530938 -  -3.7  -3.07816   TGTGGAGGTATCGAA               CCTGC AGTA GCGGG                GAGGGGGGCAATTAT  43 37
D3880_RS11575 2527880 .. 2527893 -  -2.3  -3.72893   TACTCTGGCAGCAAA               CTGAC CTGC GTCCG                GCTCGCCTCTTCGAT  52 252
        potE NONE
D3880_RS11535 2520114 .. 2520124 -  -4.6   -3.1706   AATGGATGTCATCAA                 GCGC CAC ACGC                 CGCGGTCACAACAGC  47 102
D3880_RS11475 NONE
D3880_RS11470 2505554 .. 2505595 - -30.3  -3.08046   CGGCCACGCCAAAAG CAAACGCCGCCCGCAAGCC GGTT GGCCTGCGGGCGGCGCTTG  GCTCCCTCCCTAGCG 100 35
        xthA 2487550 .. 2487578 - -24.7  -5.45652   AGCTGCAACAAAAAA        GCCCGGCGGTATC TCG GATACCGCCGGGC        TTTTTTAGGTTCTGT 100 191
D3880_RS11420 NONE
D3880_RS11410 NONE
D3880_RS11405 2482566 .. 2482586 -  -4.7  -3.53224   CAGGCGGCCGGCAAA           GCCTCGGC GGATGT GCCGA-GC            AACTTCTTCCTGTTC  52 321
D3880_RS11375 2476611 .. 2476634 - -19.6   -3.0263   AGGAGGCCCCGAATA          CGCCGTGCGC CGGC GCGCACGGCG           GTGCTGCGGCTCAAG  90 246
D3880_RS11315 2461330 .. 2461350 -  -6.7  -2.58544   GCGCAGGGTTACAAG            CCCTAGCCC TGC GGGAGAGGG            GGTAAAGGGGGACTC  49 160
D3880_RS11290 NONE
D3880_RS11285 NONE
D3880_RS11280 2452045 .. 2452055 -  -2.4  -3.05521   ATCACATCCTGAACA                 CGCC AAA GGTG                 GTCGGCTCGATCGGC  41 1
D3880_RS11275 NONE
D3880_RS11270 2448939 .. 2448965 -  -7.9  -3.21099   GTTCCTCAGCACCAA         CCTACGGGCGC GGGGT GCTCCGGTAGG         TTGGTGCTGAGCCTG  57 122
D3880_RS11265 2447902 .. 2447915 -  -3.8  -2.52676   CAGGGCCGTAAGGCA               GGCT GGATTG AGCC                AGGCGGGGGACCGCC  40 85
D3880_RS11260 2446309 .. 2446324 -    -9  -3.65902   TTTACGCGAGTGAAA              GTCTCC AGGC GGAGAC               AAACAGGCGGCAGCT  68 107
D3880_RS11255 NONE
D3880_RS11250 NONE
D3880_RS11245 2442402 .. 2442414 -  -4.7  -3.61398   GGCTCGTTCCAACAA                GGCTC ACT GCGCC                AACCAGCCGCCGTCC  54 16
D3880_RS11240 2440116 .. 2440151 -   -17  -3.33696   CTGGTCGCGAATGAA    TTCGCTCCTACAAGTG GGCA CGCCTGTAGGAGCGAA     TTTATTCGCGATTGG  93 47
D3880_RS11235 2438801 .. 2438813 -  -3.3  -4.06687   ATGCTCGAGAAACAA                TGCAC CGC GTGCT                CCACAGCTTCAGCAG  59 275
D3880_RS11215 2435461 .. 2435483 -  -3.2  -3.09834   GAGCGGAGCAGGGAA           TTGCCCCCGG TCA CACGGGGCAG           ACCTGACCTCCGGGG  43 50
D3880_RS11190 2428959 .. 2428990 - -13.7  -3.86897   TGTATCTTCCATAAA      GCACGACGCCCCG GCAGAG CGGGGCGTCATGT       GACTCGTTCAGGGCG  91 47
D3880_RS11185 2427655 .. 2427688 - -14.6  -3.06796   GCTGAGTTGATCGAA     GCGGGCGCGCCAGTC CTAGC GACTGGCGCGCGC-C     AACACCACACTCAAC  80 7
D3880_RS11175 NONE
D3880_RS11170 2425395 .. 2425437 -  -3.8  -3.55444   GGCGTACGCCGGAAA GCACCCTGCACAGTGCCGAG CTG CTCGGCGGTTGGCCCGGCGC CTTACTGGCGCAGCA  51 227
D3880_RS11135 2418954 .. 2418971 -  -6.9   -3.8377   AAGCGCCACAGCAAA             CGCAAGC GAGC GCATGCG              TTCAACAATCAGCTG  63 119
D3880_RS11125 NONE
D3880_RS11120 2413849 .. 2413874 -  -2.6  -2.54902   GACGCAAAAAGAACT         GAAATTGTCG CTTTGT CGAAAATTCC          TTCGACTACCCGGGC  38 100
D3880_RS11115 2413363 .. 2413375 -  -6.2  -3.53012   TGGTGCGCGCGGAAA                GGCG TCAAG CGCC                GTGGCGGGGAATCAA  55 104
D3880_RS11110 NONE
D3880_RS11105 2411823 .. 2411840 - -10.5  -4.57569   GCACTCCGGTAAAAA             GGCGGCC CGAT AGCCGCC              TTTTTTATTTCACCA  89 90
        metH 2404885 .. 2404909 - -18.7  -3.42699   AGGCACGCATCAGAA          CAAAGCCCGCA TTT TGCGGGCTTTG          TTTTTGCGGCGATTG 100 43
D3880_RS11080 2403195 .. 2403207 -  -9.1  -3.19157   GACCAACGGGAGTAA                CAGCC GAA GGCTG                GCCCGCAGGGCGAGC  61 149
D3880_RS11065 NONE
D3880_RS11060 NONE
D3880_RS11055 2399575 .. 2399595 -  -5.4   -5.0538   GGTCAGTCGAAAAAA            TTGCTGCA GCATG TGCAGCAG            AAGGGATTTAACCTG  85 115
D3880_RS11045 NONE
D3880_RS11040 2395943 .. 2395960 - -14.1  -4.72272   TTCGTGCATGAAAAA             GCCCCGC AATT GCGGGGC              TTTTCAAGGCTTGAA 100 44
D3880_RS11025 NONE
D3880_RS11020 NONE
D3880_RS11015 NONE
        arsB NONE
        arsH NONE
D3880_RS11000 2391234 .. 2391249 -  -3.2  -2.90496   CGCTGCGGGAAATTA              CGACTT GGTG ATGTCG               AACTGGCTGATGTAG  42 7
D3880_RS10995 2390182 .. 2390209 -  -4.8  -2.59055   GAAAGGGCTGACAAC        GCCTGCATAATCG CCC CGGTTA-GCCGGC        CAAGCCGACCAGTCG  43 17
        arsJ 2388926 .. 2388946 - -18.3  -3.71645   AACGCGACACTGAAA            GGCCCGGCA AGC TGCCGGGCC            TTTTCGTTAGTGGCC 100 51
D3880_RS10975 NONE
D3880_RS10970 2385481 .. 2385500 - -13.6  -5.86332   GCAAGCGAAAAAAAA            CCGGAGTC AGAC GACTCCGG             TTTTTGCGGTTGCCG 100 56
D3880_RS10965 2384251 .. 2384263 -  -9.1  -2.72463   AGTTATGGGCAATTA                CGGCT TAA AGCCG                GTTACAGCCGAGATT  57 27
D3880_RS10960 2383419 .. 2383434 - -10.4  -5.14965   AGCCGCATGAAAAAA              GGGACC CGTG GGTCCC               TTTTTTCATGCCGGG 100 48
D3880_RS10950 2381754 .. 2381764 -  -2.4  -2.63596   CCGCAGGCGACATCA                 CCCC GCA GGCG                 GATGAGATCGAAGAT  38 131
        gloB 2371793 .. 2371805 -  -2.6  -4.11216   GGCGGACCGTCAAAA                CCGG TCCTT CCAG                GCCCTCAGGCTGGCG  57 7
D3880_RS10900 2369606 .. 2369634 - -13.1  -3.18274   CCTACTGCAACCCAA        CCTGCAGATCCTG CAA CAGGCGCTGCAGG        ATATCGGCGCGATGG  72 517
D3880_RS10890 NONE
D3880_RS10885 NONE
D3880_RS10880 NONE
D3880_RS10875 NONE
D3880_RS10870 2360858 .. 2360900 - -21.7  -2.59055   TAAACCTCGGATAAC CGCTCAATAAAAAGGCCGCT GAAA AGCGGCCTTTTTATTGAG-G CATCCATCAGTCGGC 100 267
        folD 2350742 .. 2350758 - -10.8  -5.24129   TTCGCGCATAAAAAA              GGCCGC TTCAT GCGGCC              TTTTTTATGTTTGCA 100 46
D3880_RS10795 NONE
        lpxH 2346007 .. 2346027 - -11.9   -3.2794   GTTGATCGAGAGCAA            TGAACGCGA GTT CCGCGTTCA            TTGCGGTGTCCCGCA  72 332
D3880_RS10770 2343771 .. 2343794 - -16.8  -3.48276   CCGGCTTGCAGACAA          CAAAGCCGCC AATA GGCGGCTTTG           TTGTCTGTGGGGGAG 100 45
        acnB 2340239 .. 2340257 - -13.1  -5.38054   GGCTAGAAAGAAAAA             GCCCCGC ACTAG GCGGGGC             TCTTCTTGACGCTTT 100 46
D3880_RS10755 2339904 .. 2339921 - -14.1  -4.55295   GTGGGGATAAAGAAA             GCCCCGC CGAG GCGGGGC              AAAGATTGAGGAAGG 100 48
D3880_RS10750 2338533 .. 2338543 -  -6.8  -2.62184   TCCTCCTCGACATCA                 CAGC GCG GCTG                 TCCGGGTGTGGTCAC  49 12
D3880_RS10745 2337834 .. 2337855 -  -7.9  -3.27525   TCCTCGGAAACGTAA           GCGCCCGGA ACCG TCCGAGCGA            CGTCGGCCACTGCGG  59 101
        alaC 2336443 .. 2336455 -  -6.2  -3.65199   AATGGCGGAGTGAAA                GCCG ACGAG CGGC                AAATTCCGTGCCAGC  57 140
D3880_RS10735 2335265 .. 2335278 -  -2.3  -4.21936   GTGACAAGTTCAAAA               GCGCT GACG AGCGG                AGTGGTAGCGATGGA  60 212
D3880_RS10730 2334432 .. 2334457 -  -4.6  -3.40403   CGTTCGGTAGGACAA         GGGGGGCG ATTCTACCTG CGCCGCCC          CTCCCGTGACTCGCT  49 72
D3880_RS10725 2333740 .. 2333781 -  -4.2  -5.46698   GCCAAAACGAAAAAA CGTCGCAACACCTGACGCC GTGAG GGCGAAGGGCGG-GCGACG TCTTTGTCGTGTGTG  91 204
D3880_RS10720 NONE
D3880_RS10715 2330511 .. 2330524 -  -5.2  -3.14211   AGCGCTCTGCACTAA               GCGC CTAGAC GCGC                TGATGGTGCGTGGAG  48 56
D3880_RS10710 NONE
D3880_RS10705 NONE
D3880_RS10700 2327541 .. 2327562 -  -2.9  -3.57144   GGCCCCAGCGGGAAA           GGTGGTTCA TGGT TGAAACTCC            TGAGTCTGTTGGCGA  49 10
D3880_RS10695 2326607 .. 2326637 - -16.9  -5.80951   ACGGAAAACAAAAAA      GGCGTCC-CGCCGG TTAC CCAGCGAGGACGCC       TTTGTCCAATCCCGT 100 318
        nirB 2324038 .. 2324049 -  -3.6  -2.71712   TGTGTGTCTCCAAAT                CCGA GGGG CCGG                 TTTTCCCTCTCCCCT  41 94
        nirD 2323625 .. 2323674 -  -4.9  -3.30124   TCGTAGGGTGGACAA CGCTGCGCTTGTCCACCGGGACGA CGG TGATAGCGGTGGAAAAGC-CTGCG GCGTTTTCCACCCTA  49 46
D3880_RS10680 2320841 .. 2320864 -  -2.2  -4.07568   GGTTCTGGTGGAAAA          CGCTGCGCGG TTTT CCACCCTACG           TTTGTTGTTCAGGCG  57 34
        cobA 2319994 .. 2320011 -  -9.8  -5.81412   TGCAGGCAAAAAAAA             CCGGCC TGGTGC GGCCGG              TTGAGGTGCTCCACA 100 52
D3880_RS10635 2310126 .. 2310138 -  -4.7  -2.94099   GCGGCGCATGACACA                CCTCC TAG GGCGG                CTCTGCCGAGGCCGC  45 93
D3880_RS10630 2309589 .. 2309619 -   -11  -2.76686   ACCTTACAGAAAGAC       GCCGCATCAGGGCG TGG CGCTCAGATGCTGC       TTATCGAACTGGGCG  65 1
D3880_RS10610 NONE
D3880_RS10605 2304302 .. 2304326 -  -9.9  -3.38316   GCACTACGTAATCAA          CGGCCCGCTGC TTA ACAGCGGGCAA          CCGATACTGGCTGGC  68 68
        rlmE 2300555 .. 2300571 -  -9.4  -2.71364   CGATTTCGCTAACGA              GGCGCA GGGAT TGCGCC              GGCGAAATCGTGCAC  57 153
D3880_RS10575 2299618 .. 2299636 -  -4.4  -3.57792   CGATCGATGGCGAAA             CACGCGAC TAC GCCGGGCG             GTTTTTCTGTCCCCG  52 407
D3880_RS22720 2296420 .. 2296440 -  -3.8   -4.2679   GAAGCCTCAGGAAAA            CCGCCGCG TGGTC CGTGGCCG            ATAGGCCGGCCGGTT  62 81
D3880_RS10555 2295622 .. 2295639 -  -8.4  -2.53263   TCCACCGCCAACTGA             CGGCGA TGGGCT TCGCCG              TACAGTCCGAGCAGC  52 200
D3880_RS10540 2293869 .. 2293879 -  -8.2  -3.16264   AACGATCGACTAAGA                 CCGC AGT GCGG                 ATCTCGTTGGCGCCC  57 473
D3880_RS10515 2291012 .. 2291043 -  -5.8  -3.43049   CAACAACGGAAGCAA      CCTTCGGCTCGC GCATCAAG GCGAACCGACAG       CCACGTCTCATCGGC  55 66
D3880_RS10460 2280214 .. 2280234 -  -5.4  -3.27475   GCCTCCACGACAAGA            TCGTGCGT GGTCG ACGCAGGA            TGCGCGAGTTCATGA  52 367
D3880_RS10440 2276525 .. 2276540 -    -6  -3.18264   GCGTCGACCTAGTAA              CCGCGC GAAC GAGCGG               GATCAGCTCATCGAC  50 289
D3880_RS10420 NONE
D3880_RS10415 NONE
D3880_RS10410 2269443 .. 2269456 -  -5.3  -4.15396   GCGGAAACTAAAGAA               GTTAG CAGG CTAAC                AAATATACTTACATT  68 314
D3880_RS10405 NONE
D3880_RS10400 NONE
        adeC 2263579 .. 2263609 - -22.8  -3.82824   CATCAGCCACAACAA       TGAAAAGCCCGCCA ACT TGGCGGGCTTTTCA       GTTCAGCAGGATCAA 100 50
D3880_RS10285 2232897 .. 2232910 -  -8.1  -2.52896   CTAGTGGCGAATGCA               GGGAG CAGA CTCCC                CCCAGGTCGGGTGGC  52 298
D3880_RS10280 NONE
D3880_RS10275 2230401 .. 2230416 -  -3.2  -2.69468   GACGGGTAGAGATGA              CGCCAA CCCT TTCGCG               AATGAATTCGCTCCT  41 64
D3880_RS10270 NONE
D3880_RS10265 2229245 .. 2229268 - -14.6  -2.57132   TGGGGTTTTCAGAAT          CAGGCCCCGA TCTT TCGGAGCCTG           CTTTTGCCCCCTCTC  76 136
D3880_RS10260 2228233 .. 2228249 -  -2.1  -3.72695   ACGCTGGCGAGCAAA              GGAGGGC AGG GCCATAC              AAACTCCAGGAATTA  52 161
D3880_RS10255 2226215 .. 2226249 -   -20   -3.2827   CTATGCAATCAGTAA     CGCAGCAGCCCAGCGC AAG GCGCTGGGCTGCTGTC     CAAGGCTTTGCCTCA 100 38
D3880_RS10250 2224221 .. 2224260 -  -6.2  -3.93004   AGAACAGGGGAGAAA  CCATGTACCTGACCCAGC GCCT GCAGCGCCAGGCGCAGGG   GGCGAGGCGGGCTAC  62 158
        istA NONE
        istB 2219929 .. 2219950 -  -2.1  -3.47413   AAGATCACCAAAAAC           CGCGGCTCG TTCC CCAGCGACG            AAGCGCTGCTGAAAC  46 125
D3880_RS10190 2200153 .. 2200163 -  -2.4  -3.07816   GCCGGACCGACCGAA                 TGGC CAG GCCG                 GCATGGGCGATCAAG  41 36
D3880_RS10185 NONE
D3880_RS10180 NONE
D3880_RS22710 NONE
D3880_RS22705 2195455 .. 2195470 -  -7.5  -3.12351   GCGCTTTAGATCGAA              CGCCC GTTACA GGGCG               TTCTGTGCGTTTGAG  52 65
D3880_RS10175 NONE
D3880_RS10170 NONE
D3880_RS10165 NONE
D3880_RS10160 2192675 .. 2192721 -  -8.7  -2.65442   AGACCAGGGATAGTA CGGAGTGTGTACATGCCCAAG GCGCA CCAGGGCATGTACACACTTAT CAAACTCGCTCAGAC  56 35
D3880_RS10155 NONE
D3880_RS10150 2189378 .. 2189401 - -11.1  -4.44461   AATAACCCTAGAAAA          TCCAGTCAC TTAGCG GTGACTGGA           TTTTTTTTATGGGCA  95 370
D3880_RS10095 2180116 .. 2180133 - -14.1   -4.4261   CTGTGAAGAGTAAAA             CGGCGCC CTGA GGCGCCG              TTTTTTCTTAGACGC 100 33
D3880_RS10035 2169868 .. 2169896 - -14.7   -4.2828   CCTTAGGCAGGAAAA        GAAAAAGCCCGCA TTT TGCGGGCTTTTTT        GTTGCTCGGGTTGGC 100 43
D3880_RS10000 NONE
D3880_RS09995 NONE
D3880_RS09990 2157967 .. 2157999 - -22.2  -4.07568   TGGCCGCCGTGAAAA      GCAAAAAGCCCGGC TAGCT GCCGGGCTTTTTGC      TGAGCGCATGACCGC 100 41
        pabB 2145568 .. 2145583 - -11.8  -5.08601   CCAGCTCAAGAAAAA              GCCCGC TTCG GCGGGC               TTTTTCGTTTCCGGC 100 41
D3880_RS09940 NONE
D3880_RS09935 2143617 .. 2143635 - -13.1  -5.82172   AGCAACACAAAAAAA             GCCCGGC ACTTG GCCGGGC             TTTTTTGTGTGTAAA 100 45
D3880_RS09905 NONE
D3880_RS09900 2137946 .. 2137965 - -16.4  -5.71712   TTTGAGATAAAAAAA            CGCCGGGC AATT GCCCGGCG             TTTTCATTTCTGCTT 100 43
        oprI 2135689 .. 2135725 - -21.1  -3.17725   TCAAATTATAGGCAA    TAAAAAAGCCGACCCAG ATA CTGGGTCGGCTTTTATA    GCCTGTGGGGCTATT 100 39
D3880_RS09865 NONE
D3880_RS09860 NONE
        greB 2129745 .. 2129776 -  -5.8  -3.13403   GCTTTGCGACGAATA      GCTTCGA-CCTGGCC GTG GTCCAGGCCCCAAGC      CGCGAGCAATTGCCG  49 136
D3880_RS09840 NONE
D3880_RS09835 2125832 .. 2125846 -  -5.6  -4.30576   GGCTGACGACGAAAA               GGCAGG AAG CGTGCC               ATGTTCTCGGGCGCG  71 401
D3880_RS09825 2124759 .. 2124785 - -19.6   -3.6682   CCTGAGCGAGTCAAA         CAAAAGCCCGCA TGA TGCGGGCTTTTG         TCGTTTAGGTGACGT 100 49
D3880_RS09810 2121314 .. 2121324 -  -8.2  -3.59979   CTGCCCTATGTGAAA                 GGCG TGA CGCC                 GGAATTCACCCAGCA  62 447
        acnA 2116627 .. 2116647 - -12.6  -5.53288   CGGAAGGCAAAAAAA            GACCGGAC GATTA GTCCGGTC            GTTTTAGGGGCGGCA 100 83
D3880_RS09790 2114652 .. 2114673 -  -5.1   -3.9777   GGCAAGACCGACAAA           CCGCGA-GTG GCG CACCTGGCGG           CCTTGCAAACGCCGA  63 341
        ccoN NONE
        ccoO NONE
D3880_RS09770 NONE
        ccoP NONE
        ccoG NONE
D3880_RS09755 2108311 .. 2108335 -  -2.7  -2.73124   GGCTACTCGGGAAAG          GGTGACAGCGC GCG GCGTCATCACT          TTCCTTGGACTTCGG  39 21
D3880_RS09750 NONE
        ccoS NONE
D3880_RS09740 NONE
        hemN NONE
         fnr 2102614 .. 2102647 -  -5.8  -2.66695   CGGGCGAGGAAACAG     GCCATG-GCGCCGGC ACTGG GCCGGCGGGCGGGGC     GGAATCAGGCGTCGA  46 30
D3880_RS09725 2101782 .. 2101792 -  -2.4  -3.53091   ATTCGTGGCGGCAAA                 TCGG GTG CCGC                 TGTTCTTGTTGTGGG  47 261
D3880_RS09720 2100862 .. 2100893 - -20.2  -5.63517   CGCGGAAACAAAAAA      GACGGCGCCGCCTT GGGG AAGGCGACGCCGCC       AACTTGGGTTGTGAC 100 46
D3880_RS09710 NONE
D3880_RS09705 2097392 .. 2097416 - -13.6  -4.78107   GATGACCATGAAAAA         GCCCCGG-TGC TCAC GCAGCCGGGGC          TTTTCGGTGCCGGAC 100 43
D3880_RS09690 2094736 .. 2094753 - -12.7  -5.14563   GGCCCGACGAAAAAA             CGGGGGA TCGC TCCCCCG              CCAATACCCGCTCGG 100 378
D3880_RS09680 NONE
D3880_RS09675 NONE
D3880_RS09670 NONE
D3880_RS09665 NONE
D3880_RS09660 NONE
D3880_RS09655 2087957 .. 2087978 -  -2.9  -2.82834   CAGCCGAGCAGCACA           TGAGGGTCG TCCT CGACGATCA            GGACGGTCAGCGGCT  39 40
D3880_RS09650 2086369 .. 2086382 -  -8.1  -3.14132   GTCGCGGGGCATCAA               CGCTC ATTC GAGCG                GCTGATCCAGTTGCT  54 321
D3880_RS09615 2079818 .. 2079860 -  -2.1  -3.53012   TGCGGCGCCTGTAAA GGCCGG-CACGCTAGCA TAAAAAGATGG CGCTAGC-TGCCCGACC CGCTCTGCGCCGGGC  47 66
D3880_RS09610 2079232 .. 2079254 -  -8.5  -3.53012   GGCTGGTTGGCGAAA          CCCTC-TCCA CAAG TGGAAGAGGG           GAGTTACCGAGATCG  62 253
D3880_RS09535 NONE
D3880_RS09530 2063821 .. 2063862 -  -2.8  -3.01712   CGGTGTCGGCCAAGA CCAGCTGCGTGGTGGC CGGGCCGGGC GCCGGCTCGAAGCTGG  CCAAGGCTAGTGAGC  42 394
D3880_RS22700 NONE
D3880_RS09505 2054337 .. 2054347 -  -2.4  -4.09864   ACGTAGGGTGGAAAA                 CCGC GAA GCGT                 TTTCCACCGCAAAAT  57 104
D3880_RS09500 2052607 .. 2052621 -    -2  -3.34013   GAGTCCGGTAAGCAA               CAGGGC CAT GCCTTA               AGGGTAGTGCCTGGC  44 392
        xdhA NONE
        xdhB 2048581 .. 2048617 -  -5.2  -3.09516   TCGTGTAGGAGCGAA   TTCATTCGCGA-TGGGC CGTG GCACGGTCGCGAATAAA    TTCGCTCCTACAGGT  46 41
D3880_RS22695 NONE
        xdhC 2047483 .. 2047497 - -11.4  -4.23213   GCGATACCCAACAAA               GAGCGC GCA GCGCTC               TCGGAAACTTTGCCG  89 104
        guaD 2045775 .. 2045792 - -14.1  -4.08557   GCCGGCAAACAAGAA             GCCCCGC AGAT GCGGGGC              TTTTTCGTTTCCAAC  95 319
D3880_RS09470 2042959 .. 2042983 - -17.1  -4.87291   CACCGGAATGAAAAA          GGCCCAGTCGC GGT GCGGCTGGGCC          CGGTGGCGCGTGGCT 100 47
D3880_RS09465 2042028 .. 2042048 -  -3.8  -4.34402   CGGCCGACAGTAAAA            GGCCCGGC TTTGG GTCGGGCT            TCGTGGCTTGAAGAA  65 199
        puuE NONE
        uraD NONE
         alc NONE
D3880_RS09440 2037595 .. 2037606 -  -4.4  -2.92371   AGCCATTCAATCAGA                TGTG CTTC CACA                 GTTGTTTCCTCTTTC  45 75
D3880_RS09435 2036218 .. 2036241 - -13.8  -4.68593   GGCAGCACTTAAAAA          GAGGCCCGCC GGTT GGCGGGCCTG           AAACTCCTGGCTGCG 100 67
D3880_RS09430 2034572 .. 2034598 - -20.9  -2.73542   GGGAAGGGGGAAGGA         GCGGACCGCCG CAGGC CGGCGGTCCGC         CTTGCGGCTTAGTTG  95 34
D3880_RS09425 2032759 .. 2032780 - -15.9  -4.67353   GGAGGCAGTGAAAAA           CAAGGCGCC CGTA GGCGCCTTG            TTTGTGCAGCGGAGT 100 270
D3880_RS09360 2019051 .. 2019097 - -17.4  -3.53733   CCCATCCTACAAACA GCGATAACGAAAAAGGCGCGAT CGA ATCGCGCCTTTTTCGTGTCCGG GCCGGAATGATCAGG 100 36
         gcl NONE
         hyi NONE
D3880_RS09340 2014069 .. 2014101 - -14.2  -3.22091   ACTGGAATCGACCAA     CCTGGCTGGCAG-GC CGTG ACACCGCCAGCCAGG      AGGTCGAAAGCTTTG  78 393
D3880_RS09335 NONE
         pyk 2011086 .. 2011113 -  -6.2   -5.7946   CCGGCAATAAAAAAA        GAGGCGACCG TTGAGGGG CGGCCGCCTG         CAAAGCTGGCGCAAG 100 205
D3880_RS09325 NONE
D3880_RS09320 NONE
D3880_RS09315 2008541 .. 2008564 -  -8.1  -3.72576   GGCCGTGGCAGGAAA          CCGACAGCA GCGGTG TGCCGCCGG           GCTTGACCAAGCGCT  63 162
D3880_RS09260 NONE
D3880_RS09255 NONE
D3880_RS08915 1927342 .. 1927360 -   -16  -2.55351   CTTGCTGACAGGAAG             GGGAGGCC ATG GGCCTCCC             TTTTTCATGTCTTGC  78 177
        flgA 1924655 .. 1924677 -  -9.8  -3.74693   CTGCAGTTTAGGAAA           TCGCCAGCGC GTT GCGCCAGCAA           AACCCTGACTACATC  76 34
        flgM NONE
D3880_RS08890 1923627 .. 1923641 -  -2.7  -2.82516   TCCGGCATCAGCATA               CTGGC GTTGT GCCGG               TATGTCCCCTGTGCC  39 57
D3880_RS08885 1922684 .. 1922701 -  -5.5  -3.40597   CGGCCGAGGCAAAGA             CCTGAGC GTCT GTTCAGG              CTCTTTCTGCTCTTG  52 175
D3880_RS08870 1918088 .. 1918129 -  -6.3  -3.53091   ACCCTCTCCCGTAAA CGGGAGAGGGGGCTGTCCG CGGG CCGCCACTCCCCTCGCCCA  TTCATGGGAGAGGGG  55 60
        gcvT 1916673 .. 1916728 -  -3.6  -4.16301   GATACGATAGAGAAA CGGTCTGCCGGCGGGTAGTCGCG-GCG ATT CGCTCGCAGCGTTCCACGGGCGGAACG CTGCTGGGCGTGGCC  62 57
D3880_RS08860 NONE
D3880_RS08855 1915123 .. 1915150 - -10.4  -3.06915   AGCCAGCGGAGCGAA        GGTGGGGCGGCC AGTT GGTCACCCCGCC         TTGATATACAACCTC  64 39
        aroQ NONE
D3880_RS08840 1911894 .. 1911944 -  -5.5  -3.54129   CATACGGCGTTGAAA TCGGACTCAGGCTGCTCA-TTTACA ACT CGTAAACTGCGC-GCCTTCGCCCGA TTTCGCCTTGTCTGG  55 70
D3880_RS08825 1909492 .. 1909510 -    -8  -3.53012   GCCGCGGCGGCGAAA             CCGGCGGC GCC GCTGCCGA             GCACGACCACGTCGT  62 81
D3880_RS08815 1907407 .. 1907422 -  -3.9  -3.63627   CGGGGAGAGGGTAAA              CAGGC AACTCA GCCCG               GAGGATGGGTTGAGC  51 123
D3880_RS08810 1905427 .. 1905459 -  -9.8  -3.53012   GCCGCTGTGTGGAAA     TCGCCAGCGAGCGCG GCAT CGC-CTCGCTGGCCT      TTCCCTGCATCAGTA  67 154
D3880_RS08790 1899377 .. 1899389 -  -9.1  -3.26471   CGATTTCGACACGAA                GACGG CCA CCGTC                ACCTATGACCCCGAC  61 416
        merR 1898013 .. 1898029 -    -5  -4.60041   ACCCAGCCGGAAAAA              GCCGAG GAGTT CGCGGC              GCTGTTCAGTGCCTA  75 360
D3880_RS08760 1896742 .. 1896786 -   -10   -5.4505   CCGGTGAACAAAAAA GGCGCCGCC-CCAGCCACC ACGGGTTG GGTAGCCGGAAACGACGCC TTCGTCTATGAACTG 100 444
D3880_RS08755 1895139 .. 1895156 -  -4.1  -3.96531   TCAGATAGTCAGAAA             CAAGGAC AAGA GTCTTTG              GCCATAGCTGCTGAC  56 367
D3880_RS08745 NONE
        ntrB NONE
D3880_RS08735 1890942 .. 1890960 - -13.1  -4.86731   GCCGCCCAAAGAAAA             GCCCGGC GCGAG GCCGGGC             TTGGAGGGGCGGGGC 100 47
D3880_RS08730 1889075 .. 1889092 -  -5.5  -3.54129   CACACCGCTGGCAAA             CCCCTGG CGGG CCAGGAA              GGGTCAGTAGGTGTA  55 29
D3880_RS08695 1880614 .. 1880642 -  -8.9  -3.59979   CTGGGCGACGGCAAA        GCAGTGGTCAAAG GCG CCTTGATCACTAC        CCAGTACAACGGTTT  62 446
D3880_RS08665 1873897 .. 1873916 - -12.1  -5.71712   GCGCAGACAAAAAAA            GCCCGCC GGGGGA GGCGGGC             AGAAGGGGCAACGAG 100 68
D3880_RS08660 1871715 .. 1871743 - -17.4  -4.85782   CCGCGTAAAAAGAAA        CGCCGTCCGGAG CATGC CTCCGGGCGGCG        TTTTGTTTTGGGATG 100 264
D3880_RS08625 1863788 .. 1863821 -   -11  -3.63627   TCGCGAGATCGTAAA     CAGGCTCTGAGCCGC CGGCC GCG-CTCAGCGCCCG     GCCAGCACCTGGGTC  77 16
D3880_RS08615 1862043 .. 1862053 -  -2.4  -3.53722   GCTAGAGCCAGACAA                 GGCG CAA CGAC                 CAACGGGAGTAACAG  47 189
D3880_RS08510 1839138 .. 1839148 -  -8.2  -3.56558   GCAGAAGCTATAGAA                 GCGC AAT GCGC                 CGCTTCCTCTGGCGT  64 255
D3880_RS08505 NONE
D3880_RS08500 NONE
D3880_RS08495 NONE
D3880_RS08490 1835365 .. 1835411 - -19.5  -2.85999   GGATTGGACAGGATA TGCATCGAGGCTCGTCCACTC GGGTG GAGTGGGCGAGCCTCGGCACA GGTTCAGCCGTGCAG  88 29
D3880_RS08470 NONE
D3880_RS08465 NONE
D3880_RS08460 1824629 .. 1824682 - -18.2  -2.50994   CGCAAGCGCATGAAG CGCTCCTGAAG-GCCCGCGCCCCGGG ACAA CCCGGAGCGCGGGTGCCTTA-GAGCG GGTTGACCAGATGCC  85 18
D3880_RS08450 1820490 .. 1820508 - -10.2  -3.05816   CGATGGGGCAGTGAA             GGGCCAGC CTG GCTGGCCT             ATGGCCTATGGCCGA  64 208
D3880_RS08405 1809338 .. 1809364 -  -5.1  -3.84961   TATCCAATCAGGAAA         TCAGCGATCGG CTGTT CATATCGCTGA         GCACGGTCAAGGCCC  60 282
D3880_RS08395 NONE
D3880_RS08390 1803254 .. 1803292 - -22.7  -3.36878   TGCAGGCACTCATAA  CG-ACAAAGGCCCGACCT TTTC AGGTCGGGCCTTTGTTCG   CGCTGCCGGAGCAGT 100 50
D3880_RS08385 1800586 .. 1800608 -  -7.6  -3.38046   CCGTCAGCGGAAAGA           CCGGCGGC TCATTTC GCCGCCTG           GGCCCCGGCCGCGGG  59 11
D3880_RS08380 NONE
D3880_RS22870 1798084 .. 1798115 - -12.3  -2.77899   CCCGGCGACGAAGGA      GGGCGATGGTGGGG CTGGT CTCCACC-TCGCCC      AGACTCCGCAGGCGG  69 432
D3880_RS08365 1794761 .. 1794780 -  -4.2  -3.92075   ACGTCCAGGTATAAA            GCC-GCGGA CTT TCGGCAGGC            GTCTGGAGGGGGCGT  59 96
D3880_RS08350 NONE
D3880_RS08345 NONE
D3880_RS08340 NONE
D3880_RS08335 NONE
D3880_RS08330 NONE
        lpdA NONE
D3880_RS08320 1785320 .. 1785331 -  -2.2  -3.66654   GACCTGAACCTGAAA                GCAG CTAT CTAC                 CTGTCGCGAGTAATA  49 194
D3880_RS22920 NONE
D3880_RS08310 1782260 .. 1782284 -  -4.1  -4.42788   GTCAACGGCACAAAA          GCGTGCAGCGC CTT ACCCTGCTCAC          CGCGCCACGCACGGA  65 451
D3880_RS08270 NONE
D3880_RS08265 1774765 .. 1774786 -  -5.1  -3.73224   TGACCTTGCAGGAAA           CTCAGGCGTG CAA CTCGC-TGAG           TTCAGTTTCGAAGCG  57 5
D3880_RS08260 1773554 .. 1773564 -  -4.6  -2.71731   GCCAGTGCTGAATCA                 GCCC GCC GGAC                 CATCGGTTGTGGCCT  43 60
D3880_RS08255 NONE
D3880_RS08250 1770597 .. 1770613 -  -3.5  -3.14931   CTCACCGGTGACGAA              GGCGCCC GCC GGGTGCT              GCGTGCCAATGCAGC  45 201
        pobA 1739911 .. 1739937 -  -5.8   -5.0133   CAGGCTGTGAAAAAA        CGCCT-GGGGC TGTCCC GCCTCTAGGCG         CCGGAGAACACTATT  84 36
D3880_RS08120 NONE
D3880_RS08115 1737076 .. 1737095 -  -8.6  -2.73364   GGTCGAGGGCAAGCA            CG-CCTTGC TGC GCAAGGTCG            GGCACTACCTGCTCG  52 371
D3880_RS08000 1712944 .. 1712956 -  -3.3  -2.54896   TCGGGATGCAAGGTA                TCGCG AAA CGAGA                TGGCCGGAGGGGGTA  40 153
D3880_RS07995 1711596 .. 1711639 - -24.9  -3.72576   GCTCTGCGCAGCAAA CAGCCAAACGCCGAACAGCC TGCGC GGCTGTTCGGCGTTTG-CTG GCACGGTTATCGGTT 100 43
D3880_RS07985 NONE
D3880_RS07980 NONE
D3880_RS07925 1698440 .. 1698456 -  -2.9  -3.04461   GACCCAGGCCGAAGA              GCCGG GGCCCAT CCAGC              TGGACAATTCCGGCC  41 89
D3880_RS07915 1697257 .. 1697273 - -10.8  -4.88407   TTATGCAATCAAAAA              GCCGGC TCATT GCCGGC              TTTCTGTTCGAGAAG 100 44
D3880_RS07905 1694891 .. 1694912 - -15.9  -3.70902   TGCGCCATACCGAAA           GGGCCTGCA GAAA TGCAGGCCC            TTTTTTGTTTTCGGC  95 44
D3880_RS07835 1680596 .. 1680634 -    -8   -3.1372   CAGCGGCGAGGAATA  CCTGCTGGTCCAGCCGC TGGTCG GCGGCTGGGGC-GCGGG   CCACGACAAGGACGG  54 525
D3880_RS07760 1661171 .. 1661190 -  -6.4  -3.67775   ACTGGGAGGCAACAA            TCTCCCGG AAGG CCAGGAAA             TCCGGCCTGGAGGTT  60 186
D3880_RS07750 1660313 .. 1660326 -  -2.3  -3.85698   TGGCGGGCGTACAAA               GGCTG CATC CAGCT                CCTGCGTGGTTTCTG  54 381
        phhA 1653331 .. 1653361 - -14.9  -2.90075   CGCGGTTTAATCAGA      GGTGGATAA-GCCG CAAG CGGCGTTATCCACC       CTACGCGGCTTTGGG  79 26
D3880_RS07715 1652876 .. 1652894 -  -4.4  -2.93723   CTGCCAGTAACGACA             GGCGCCGC ATC ACAGCGCT             CACTTGCGGCCCATC  45 25
D3880_RS07710 1651947 .. 1651967 -  -7.5  -3.73072   AACGCCTGCAGCAAA            GCCTGGCGA ATA TCGTCAAGC            GCCTTGGTGGTGAGC  63 456
D3880_RS07695 NONE
D3880_RS07690 NONE
D3880_RS07685 NONE
        phnE 1646633 .. 1646664 - -13.7  -2.83822   TCCACCCTACAACTA      GGGAGAGGGCGAG CTGCCT CCCTCCCTCTCCC       CCGGCCCCTCTCCCA  75 63
D3880_RS07655 1642204 .. 1642246 -  -7.6  -3.35867   GCAATCCTGAAGCAA GCGGCG-GAGCACTGGCGC TATGTG GCGCCCCTGCTCACACCGG CACAGACCGAAACGG  59 449
D3880_RS07640 1640810 .. 1640839 -    -7  -3.15544   CGCCAGGGCGAGCAA       CGGCGGCGAATG CATGCT CAACCGCCTCCG        ACCAGCGGCACGAAG  54 13
D3880_RS07635 1638401 .. 1638416 -  -8.2  -3.68351   CCGCGATCAGGGAAA              CGCGAC CGCC GCCGCG               AGATACAGCAGCAAC  64 1
D3880_RS23040 1637872 .. 1637920 -  -3.3  -4.79756   GAGACAAGGCAAAAA CAGCCGAAGAA-GCGCAGTTTAC GAGTT GTAAA-TGAGCATTCTGAGGCTG TTTTTAACGCTGTAT  74 142
D3880_RS07595 1629717 .. 1629748 -  -2.2  -3.54129   CAGACGCCTGTGAAA      TGGCGGCTTCAGC TGGGCAG GCTGTAGC-GCCG      AACGCCGTCGGCTCA  47 38
D3880_RS07590 NONE
D3880_RS07580 1626898 .. 1626922 -  -6.9  -3.16564   TCCGCAGTCTAGGAA          CGGCGTCCGGC TTT GTCTGTCGCCG          GGCTAGCGCGATTTG  54 28
D3880_RS07575 NONE
D3880_RS07570 1625556 .. 1625576 -  -7.5  -3.03124   GTTGAGCCTGCAATA            CCCATCACC CGC GCCGATGGG            TATCGCTGCGCTCAA  52 64
D3880_RS07530 NONE
D3880_RS07525 NONE
D3880_RS07520 1614168 .. 1614179 -  -3.6  -2.70936   TGAGTAATGACATGA                GGCC TCCT AGCC                 AGCACCGATGGCAAA  41 20
D3880_RS07515 1612170 .. 1612188 - -13.2  -4.91084   GACGGAATAAGAAAA             GGGATGAC AGT GTCATCCC             TTTTTTATTGGGCGC 100 53
D3880_RS07505 NONE
D3880_RS07500 1609375 .. 1609402 - -14.8  -5.26316   TCAGTCCACAAAAAA        GCCGCCCCG-GCC GGC GGCGCGGGGTGGC        TCTGTAGGAGGTCAC 100 37
D3880_RS07495 1608128 .. 1608146 -  -4.5  -3.55563   AGTCGATGCTCCAAA             CGGCCTC GGCCT AAAGCCG             GTGGAGGTGCTGGTG  52 284
        minC 1605353 .. 1605372 -  -3.6  -3.16068   CCCCTAATGGAAAAG            GTTTTCAG GTCC CTGAAAAT             GAGCGGCAGTATCCG  45 41
        minD NONE
        minE 1604202 .. 1604219 - -14.1   -5.1356   TTCCACCAATAAAAA             CGGCGGC CTAA GCCGCCG              CTTCCCTCGCTCCGG 100 68
D3880_RS07465 NONE
D3880_RS07460 1602003 .. 1602017 -   -10  -4.58685   AAACGGCGTTAAAAA               CGGCTT CGG AAGCCG               CTTGCGGCTAACGTA  89 218
D3880_RS07455 1600987 .. 1601018 -  -4.2  -3.05596   GATGGGCGGACGCAA      GGCCGAGCTGGATC TGGC GCTGCTGCTCGGCA       AGCGCCTGCAGCTGA  44 266
D3880_RS07445 1598012 .. 1598035 - -13.2  -4.85782   TGCTGGAAAAACAAA          GGGGCCGATA TCGC TATCAGCCCC           TTATTTCACGACAGA 100 58
D3880_RS07440 1596178 .. 1596196 -  -6.6  -3.04144   GGCTGATCCGCAACA             GGCTGCAC ACT ATGCGGCC             CGTGCCGAGGAGTTG  52 51
        rdgC 1591979 .. 1591995 -  -3.5   -3.6715   TGAGGCAAGTTTAAA              TGCCCCG TTT CGGTGCG              AAGGGTGGGCGCCGC  51 65
        sugE 1591506 .. 1591523 - -14.1  -5.07275   GTACAGAGACAAAAA             GCCCGCC GATT GGCGGGC              TTTTTGTTGGCTCGG 100 43
D3880_RS07360 1580430 .. 1580440 -  -3.2  -2.71364   GCAGGGGCTCAACCA                 GCAA CTC CTGC                 AACTGCGTCCGCTGG  40 381
D3880_RS07350 NONE
D3880_RS07345 1577696 .. 1577712 -  -5.1  -3.14132   CGGGGTGTTGAGCAA              GCGCT GGTCAGG AGCGC              GCCGCGTCGGCGCTC  48 16
D3880_RS07340 1576392 .. 1576414 -  -8.3  -3.39327   GCGGCAGAGCCAGAA           CGCGCGCGA GATCG CCGAGCGCG           CCGGGGCGCTGTACG  60 366
D3880_RS07295 NONE
D3880_RS07290 1568393 .. 1568422 - -15.1  -4.15044   TGGTGGGCGAATAAA       GCAAAAAGGCCGC TGCT GCGGCCTTTTTGT        TGCCAGCCGTTCTCA 100 38
D3880_RS07275 1565400 .. 1565417 -  -8.3  -5.08601   CCAGCCCAACAAAAA             GCCCGGC CTAG GTCGGGC              TTTTTTGTGGGCGCT  93 41
D3880_RS07185 1551127 .. 1551145 -  -8.8  -4.25104   CCCTGCCTAGCAAAA             GGCCCG ACTAGAG CGGGCC             TTTTGCGTGTTGGGT  79 44
D3880_RS07180 1549777 .. 1549788 -  -7.2  -3.44876   AAAGGACAACAGTAA                GGCG ATGA CGCC                 CGTTAGTAGGTGGAC  58 229
D3880_RS22685 1549179 .. 1549194 - -11.8  -5.28176   TTGACCCATAAAAAA              CCCGCC AGCT GGCGGG               TTTTTTATGGGTCGG 100 44
D3880_RS07160 1546437 .. 1546453 - -15.1  -5.24129   TGCGGCGATAAAAAA              GCCCGGC AGA GCCGGGC              TTTTTCATGGGGTAT 100 57
D3880_RS07155 NONE
D3880_RS07150 NONE
D3880_RS07145 1542564 .. 1542578 -  -7.1  -3.20858   CAGTACACCGAGGAA               CAGGC CGAGC GCCTG               GAGCTGGATGGTTGG  52 215
D3880_RS07130 1540493 .. 1540511 -  -2.3  -3.53012   CCCGTTTCGTTGAAA            CTGTGCGC TCAG GCGC-CGG             GTGGCGTGACCCGTC  47 56
D3880_RS07125 1539957 .. 1539987 - -19.1  -3.85698   GGGCGGCGCTAGAAA      CACGAACCCCGCGC TTGG GCGCGGGGTTCG-G       TCATCCAGCGACCGA 100 42
        arsC NONE
        wrbA NONE
D3880_RS07105 1536574 .. 1536600 -  -2.1  -3.71284   GTCCGACGAAGACAA         GCTGCGCGC CCTGCAACT GCGCGCCTC         GCGCCGGGGCCTGCA  51 300
D3880_RS07080 1531540 .. 1531555 -  -4.6  -2.70932   CGCTCGGGCCAATCA              GCAGCG GAAA CGCTCC               ACCGACTTCGACAGG  43 7
        purM NONE
        purN NONE
D3880_RS07065 1528899 .. 1528917 - -13.1   -5.4505   CGCGTCAATAAAAAA             GCCGGGC AGTTG GCCCGGC             TTTTTTGTGGCGGCT 100 44
D3880_RS07025 NONE
D3880_RS07020 1516623 .. 1516638 -  -3.3  -3.60098   AGGTTGTAGCGGAAA              TCATG TTCGGC CATGA               CGGCGGGCTCGGCGG  51 100
D3880_RS07015 NONE
D3880_RS07010 1515696 .. 1515744 -    -4  -4.57837   ATACGGCGTTAAAAA CAGCCTCAGAATGCTCA-TTTACA ACT CGTAAACTGCGC-TTCTTCGGCTG TTTTTGCCTTGTCTC  68 79
D3880_RS07000 1514150 .. 1514181 - -18.2  -4.66833   GGGGAACGCGAAAAA      CAAAAAGGCCACTC GCTT GAGTGGCCTTCTTG       TTGAATTGGTTGCGG 100 32
D3880_RS06995 1513938 .. 1513972 - -28.8  -2.62616   GGAGGGCGGATAGCA     GAAGGCCCCGATTGCC AGT GGCAATCGGGGCCTTC     TCTGTATCTGGTTGC 100 34
        mprF NONE
D3880_RS06985 NONE
D3880_RS06980 1508990 .. 1509024 - -25.9  -4.08945   ATCAGGGCTGGAAAA     CAAACGGCGCGACCC TGGAT GGGTCGCGCCGTTTG     CATTTTTGGGGACTA 100 131
D3880_RS06965 1504911 .. 1504927 -  -2.2  -3.53811   CCCATCTGTTGGAAA              GCGG CCAGGACAT CCGC              ACGGTGCAAGAGCTG  48 134
D3880_RS22680 1503224 .. 1503244 - -13.9  -3.22409   TAACGATTAAGCTAA            GGGGCGGCG GAA CGCCGTCCC            AGCGAACGAAGTGAG  78 64
D3880_RS06950 1502828 .. 1502848 - -13.9  -3.22409   TAACGATTAAGCTAA            GGGGCGGCG GAA CGCCGTCCC            AGCGAACGAAGTGAG  78 57
D3880_RS06945 1502332 .. 1502353 - -12.9  -3.22409   TAACGATTAAGCTAA           GGGGCGGGC TTTA GCCCGTCCC            AGCGAACGAAGTGAG  74 57
D3880_RS22675 1501453 .. 1501465 -  -3.3  -3.19371   AGTGAGCGAAGCGAA                CGGCC TTG AACCG                CTAGTTAGGCAGCAG  45 42
D3880_RS22670 1500926 .. 1500947 - -12.9  -3.22409   TAACGATTAAGCTAA           GGGGCGGGC TTTA GCCCGTCCC            AGCGAACGAAGTGAG  74 57
D3880_RS06940 1500402 .. 1500414 -  -3.3  -3.19371   AGTGAGCGAAGCGAA                CGGCC TTG AACCG                CTAGTTAGACGTTAA  45 37
D3880_RS22665 1499761 .. 1499793 - -11.3  -3.22409   TAACGATTAAGCTAA      CGGGCAGACAAAAGC GCA GCTTTTGGCTGTCCA      GCGAACGAAGTGAGC  69 58
D3880_RS06935 1499234 .. 1499279 -  -4.6  -2.58714   TGTGACATCAACGGA GCACAGCCAG-CGTAGCCGGT TCACC ACGAGCTACGCCCCGCGGCGC CGCACATGGAGCCTA  43 38
D3880_RS06930 NONE
D3880_RS06925 NONE
D3880_RS06920 1497715 .. 1497731 -  -2.1  -3.17392   GATGGGGCAATTGAA              GGCGCTG TCC CAGTGAC              GTGTTGGCGATGGCG  43 281
D3880_RS06915 1496823 .. 1496835 -  -3.3  -3.53722   GCTAGAGCCAGACAA                GGCAA AAA TGGCC                GAGGGAGCGGAGTTT  49 116
D3880_RS06910 1496187 .. 1496198 -  -7.2  -3.62096   TGGCATTACCCTAAA                CGGC TCCG GCCG                 CCAGCGGAGGCACTA  60 90
D3880_RS06905 1495124 .. 1495136 -  -4.8  -3.41878   GCCCCCAACTGATAA                CGCT AGCAG AGCG                GGCCCGGCAGGCTGG  52 268
D3880_RS06900 NONE
D3880_RS06895 1493459 .. 1493477 -  -2.4  -2.59564   CTGGCAGTCGATAAT            GCCGCTG CGATCC CAG-GGC             TCAGTCTTGAACTGT  38 179
D3880_RS06890 1492996 .. 1493019 - -10.2   -3.4052   CTGGAACTCAAGCAA          GGCGCCCCAG GCGA CTGAGCCGCC           CGGCGTGGAGCCGTT  68 48
D3880_RS06875 1491420 .. 1491439 -  -7.1  -2.78715   AAGGCGCTCATGATA            GCCGAGC CAGGGC GCTCAGC             GGGGTGGCGGGCGGC  50 21
        tsaA 1490334 .. 1490353 -  -4.2  -3.15544   CGCCATTCGGATCAA            TGC-CACCG CCT CGGTGCGCG            ACGAGCCGGGCTGTC  45 364
D3880_RS06860 1489356 .. 1489412 - -13.1  -2.78463   AGCTGTTCGACGACA TCGGCCTGCCGCCGATCAATC-CGCAG GACGA CCGCGCGAT-GATCTGCGGTAGCCCGA GCATGCTCGACGAGA  67 403
D3880_RS06850 1487557 .. 1487568 -  -5.8  -3.55815   AAACAGCCTCGGAAA                GCAG CTTG CTGC                 TAACGCGCTTCAGCG  55 156
D3880_RS06835 1485345 .. 1485356 -  -3.6  -3.21416   GACCTGCAGGACGAA                GCGC ACCG ACGC                 CTGCAGGTCTTCCTC  45 53
D3880_RS06825 1483888 .. 1483900 -  -4.1  -3.05011   ATACGCAAAGTAAAG                CATCC GGC AGATG                AACGAAATGTTTCAT  43 95
D3880_RS06820 1482166 .. 1482198 -  -8.3  -3.53012   GGTTGCTCTCGGAAA      CCCGCTATCTGGAGA GCT TCGTCAGCCAGCGGG      CGCGCGCTGGCTATG  62 451
        mutS NONE
D3880_RS06795 1477191 .. 1477209 -   -16  -4.73108   CGCAGAAAAGTAAAA             GGCCCGCA GTT TGCGGGCC             TTTTGTATTCAAGCG 100 49
D3880_RS06750 1468506 .. 1468521 -  -3.2  -4.57837   ATACGGCGTTAAAAA              CAGCCT CGGA AAGCCG               CTTGCGGCTAACGCG  68 176
         map 1441563 .. 1441577 -  -8.5  -3.39595   TTTAACGAGCGAGAA               CGGCC TAGAG GGCCG               AAGTGCGGGCGATGG  59 15
D3880_RS06625 1438794 .. 1438832 - -10.9  -3.61398   CCGCCGGTGGAACAA   GTCTGGTGCAGCACGGC GGGCG GCCGCGCTGCACCCCAA   GGGTTCAAATGCTAA  77 30
        dapC NONE
D3880_RS06615 1437136 .. 1437180 - -14.3  -3.57797   CTTAAAGGGAGATAA GGCTGCGC-GGC-GGCCGAGC GACAG GCTCGGTCAGGCGGCGCAGCC GTGGGTTAGCTGAGT  90 31
        dapD 1436012 .. 1436060 - -14.7  -3.60475   AAGGTTGAGCTGAAA GCGT-AGCGGGCACAGGCCAGAC TAGAT GTCTGGCCTGTG-CCGCAGACTC AAACCAATCTATTAG  90 37
D3880_RS06605 NONE
D3880_RS06600 1434282 .. 1434308 -  -4.9  -3.31248   CAAGACCGTGGACAA         GCTGGTGGCCG GCGCG CGGCGGCCGGC         GGAGCGCAAGGCCGC  49 60
D3880_RS06590 1432154 .. 1432167 -  -2.3  -3.28712   TCCTGGCTTGCAGAA               GTTCG TCGG CGGAC                CGTGCGGGCTTGCGC  44 63
D3880_RS06585 1429367 .. 1429398 - -16.6  -3.59979   GGCCGCCATCTTAAA      GCAAAACGGCGGCC ATTA GGCCGCCGCTTCAC       GCTACACCGGAGGCG 100 42
        dapE 1428165 .. 1428180 -  -3.9  -2.69977   ACAGCGGACAGATCA              GCCGG TTCACG CCAGC               AGCCGCTCGAGGGTT  41 16
D3880_RS06575 NONE
D3880_RS06570 1426790 .. 1426818 - -21.9  -3.61894   AACCGTCCGGAACAA        CAAAAGGCCCGTC AGT GACGGGCCTTTTG        TTTTTCTACGGTTCG 100 161
        plsB 1418428 .. 1418462 -  -8.7  -3.02263   AGAGTCTGTGCAATA    TCTTGCGTAGCCCGGAT TGC ATCCGGGCTAC-CA-GT    GTTGACTGGCAAGGC  60 44
D3880_RS06530 1417519 .. 1417530 -  -7.2  -3.59649   AAACAACCTCGGAAA                GCGG CTTG CCGC                 TAACGCGCTTCAGCG  60 179
D3880_RS06520 1415901 .. 1415923 -  -3.3  -3.53012   GCTTCTTCGGCGAAA           CCGGCACGA TTGGC TTGTGGCGG           GGGATGTACGGCTGG  49 87
D3880_RS06510 1410596 .. 1410609 -  -2.3  -2.62983   TGCATGCCCACATGA               CTCCA CGCA TGGTG                CTCGCTCCCCTCTGT  38 49
D3880_RS06505 NONE
D3880_RS06500 1408626 .. 1408641 -    -6  -3.05596   CATTTGTTCAGCTAA              GCGCAG TTTT CGGCGC               GATTCAGTTCCCGCG  49 473
D3880_RS06495 NONE
D3880_RS06490 1405790 .. 1405801 -  -3.6  -3.53012   GCTCCGCTCGCGAAA                GCCG GCGG CGAC                 CCATCAGCCAGGTCT  49 95
D3880_RS06480 1403712 .. 1403737 -    -4  -2.98823   CGGGCCCCAGAGATA         GACCCCATGCA CCGCT TGC-TGGTGTC         GATGCAGGGCCTGAT  43 295
D3880_RS22660 NONE
D3880_RS06470 1401445 .. 1401456 -  -4.4  -3.53012   TGGTTCTTGGCGAAA                GTGT TCGC ACAC                 TTCACGACGCTCAAT  52 134
D3880_RS06465 1400500 .. 1400513 -  -4.5  -3.14026   GATACCCATAGCCAA               CGCCA AACA TGACG                GGTATCGCGCTGCGT  48 308
D3880_RS06455 1397997 .. 1398041 -  -4.8  -4.03234   GTTGCCGGAGAGAAA CAGCACG-CGGCGACCGCC TTCGCCCC GTGGGTCGCCGGCGAGCAG GGCGGGGCTGAGGTG  61 441
D3880_RS06425 1393304 .. 1393345 -  -7.9  -2.60496   TGCTTGGCTAAACAC TGTAGGGCGGGTTA-GCCGC GTA GCGGCGTAACCCGCCGAGGA CCTGGTGGGTTACGC  52 144
D3880_RS06420 1391467 .. 1391484 -  -3.3  -4.71061   AGCGATACCCAAAAA             GCGTCCA CCCC CGGACTC              ACCCCAGCCGGCGCG  70 24
D3880_RS06385 1378713 .. 1378728 -  -3.2  -3.65522   CATCTATCCGAAGAA              GGCCTT GGGT AAGGAC               TGAGCCGTTCAGCGC  51 264
D3880_RS06375 1376594 .. 1376608 -  -4.9  -2.88544   TGCCACCGGGATATA               GCGAC TAGTT GCCGC               TCAGCCTTTGACGCA  45 26
D3880_RS06335 1367448 .. 1367499 -   -10    -2.604   CAACAGATCAAGTGA CGCCCTGGCTCGCTGCCGCCCGGC TCGATG GCCTGGTGGCAG-G-GCAGGGGCG CGTCCGCATCAGTGC  60 34
D3880_RS06280 1356382 .. 1356392 -  -2.4  -2.57501   TTCGATTAAATAGAT                 GGCC TGC GTCC                 GCTGGGTTGTTCGCG  38 5
D3880_RS06275 NONE
D3880_RS06270 1353445 .. 1353469 -    -5  -3.14931   GCCAGCGCGCAGGAA         CCGCAGCGTAC TGAA GTACG-TGAGG          ATTCCGAGCACTGCC  48 83
D3880_RS06265 NONE
D3880_RS06260 NONE
D3880_RS06255 NONE
D3880_RS06250 NONE
D3880_RS06245 1348484 .. 1348506 -   -12  -3.17212   TGACTACGGCAGCAA           GCGCGACATC GCC GATGTTGCGC           TGTTCCTGGCCTCGG  66 450
D3880_RS06235 1347047 .. 1347062 -  -4.6  -5.11033   GACAATCCCAAAAAA              CGCTAG AGCG CTTGCG               CTGCTCCTGCTCCGC  83 91
D3880_RS06210 1340814 .. 1340841 -  -3.3  -2.78715   AAGTGCCGCATCATA        CCGGCCTAGAGC GCTTT GC-CAAGGCTGG        CAAGGTGCTGGCCAA  41 83
D3880_RS06205 1340013 .. 1340028 -  -3.2  -2.71731   GCCATCCTTGAATCA              TCATCC CCTC GGCTGA               TGATGGTTTGACGAC  41 86
D3880_RS06200 1339027 .. 1339046 - -13.6  -5.13741   GTAACCCAACAAAAA            GGCCAGCT ATCA AGCTGGCC             TTTTTGTTTGTGCGG 100 45
D3880_RS06175 1332464 .. 1332487 -  -4.5  -3.32803   ACCAGACCAAAGATA          GGGTGACGA GCCGTT TCATCGCCC           TCTAACGCTCACTAC  49 37
D3880_RS06170 1331623 .. 1331638 - -10.4  -5.26875   TCCGCAATGAAAAAA              GCAGCC TTCT GGCTGC               TTTTTTCATTTCTGC 100 89
        ccsA 1326809 .. 1326837 -  -4.6  -2.84098   TTCCGGAATGAAGTA       CGGCTCCTTGCTGG CGG CCAGCAACG--CCG       CGCCATCCAGATCGT  45 380
D3880_RS06105 1322286 .. 1322297 -  -7.2  -2.62184   CCCGGGTCGACAGGA                CCGC CTTG GCGG                 TCAGGTTTTTTTATA  49 26
D3880_RS06100 1321719 .. 1321734 - -11.8  -5.24129   GGCTTGCAGAAAAAA              GGCGCC AAGC GGCGCC               TTTTTTGTCGCTCGC 100 46
        mltF 1315002 .. 1315019 -  -4.8  -3.29144   CGAGGCCCTCGACAA             CTACCG CCTGCC CGGCAG              CACGCTGTACGTGAC  49 266
        xseA 1307650 .. 1307673 -  -7.4  -2.73529   TCCGATATAAACGTA          GGGTGGATGA CGCT TCACCCATCC           ACCTTGGGTTAATCC  50 34
D3880_RS06040 NONE
        leuA 1304750 .. 1304774 - -16.5   -5.1417   CTACAAAAGCAAAAA          GCCGCTTACCC GAA AGGTAAGCGGC          TTTTTCGTTGCCAGG 100 48
        suhB 1284969 .. 1284982 -  -9.5  -5.45652   ACTGCCAATAAAAAA               CGCCC TTCG GGGCG                TTTTTTATTGGTTGG 100 56
D3880_RS05885 1278487 .. 1278503 -  -8.7  -3.27676   ACCCATGCAAACACA              GCGCAGA AAC TCTACGC              CAGTTTCGAGAGAGA  63 178
D3880_RS05880 1278076 .. 1278099 - -16.8   -5.1101   TGAGGACGCAAAAAA          GCCCCTGATG TCGC CATCAGGGGC           TCTTTAATTTCGGCA 100 47
D3880_RS05875 1277516 .. 1277532 - -10.8  -5.95539   GGTGAAATAAAAAAA              GCCGGC GCAAT GCCGGC              TTTTTCATTTCTTAT 100 30
D3880_RS05860 1273658 .. 1273688 - -13.9  -2.92192   CCTGATGCAACGAGA       TGGCCTGGCGGCG GGTTA CGCCGCCAGGCGG       CTAACCCACCCTACA  75 36
D3880_RS05855 NONE
D3880_RS05850 1272752 .. 1272766 -  -3.5  -4.35483   GGCGAGTATAACAAA               GCTGC GCCGG GCAAC               GGGCATGGGCAGGCG  65 84
D3880_RS05845 1269837 .. 1269862 - -16.1  -3.93583   CAACCTACGGATAAA         GCGAGGCCCGC AATC GCGGGCCTCGG          GTTCAACTTACAGAC  95 33
D3880_RS05840 1269257 .. 1269272 -  -7.5  -3.14344   GATCGGCGCCATGAA              GGCCG ACGAGG CGGCC               AGGGCGACAATCATC  54 192
D3880_RS05830 NONE
        rlmF 1266853 .. 1266867 -    -7   -3.2056   ATCGACATTCAGGAA               CGCCTG TTC CCGGCG               ATTGAGGATGGCCCG  52 511
        yjeH 1260257 .. 1260307 - -10.4  -2.55668   CACTCCGAGACTAAT GCAGGGTGCGCCGTGTGCACC GTTTACCGGA GGGACGCACGGCGC-CCCTAC GGGCGTTCTGCCACC  60 22
D3880_RS05795 NONE
        yejK 1257295 .. 1257312 -  -4.7  -4.77165   GCGGGTACAAGAAAA             CCGGCCG GGTG CATCCGG              AAGCGGGCGTTTCAG  78 501
D3880_RS05785 1255962 .. 1255974 -  -4.7  -3.40403   GGTCGCCCAGCACAA                CTGGC CAT GCCTG                ATGGCGCGGCTGGAA  51 465
D3880_RS05740 1248183 .. 1248201 -  -6.6  -2.71712   GGCCTTCTGTGAAAT             GGCTCAAC CCA GTCGCGCC             GCCAGCCAGGTGCCG  50 10
D3880_RS05735 NONE
D3880_RS05730 1244988 .. 1245008 -  -8.2  -3.05384   GCCGGGTCGAGGCAA            GGAGCCTG GAGCG CAGGCGCC            GCAGTGAACTGCAGT  56 106
D3880_RS05725 NONE
        rhlB 1241889 .. 1241908 - -13.6  -5.45652   AGGCCCAACAAAAAA            GGCGAAGC TCGC GCTTCGCC             TTTTCGATGCATCCC 100 49
D3880_RS05715 1239735 .. 1239750 -  -3.2  -3.61398   CGGCGCCTCGAAGAA              GGCC CGGCTGGC GGCC               GTCAGCGCGCGTACC  51 512
D3880_RS05675 1232683 .. 1232699 -  -9.3  -2.87211   AGGCCTCGGCATACA              GGCCGTC ATG GGCGGCC              AGCAGGCTATGGGCT  59 260
D3880_RS05665 1231493 .. 1231503 -  -6.8  -3.10056   AGTAGTTATTCAACA                 GCCT GTC AGGC                 TTCGCTCTTGATTTC  52 20
D3880_RS05660 1230800 .. 1230816 - -13.7  -5.28176   GTTACGCAGAAAAAA              GCCGTGC ATT GCACGGC              TTTTTTGCTGTTTGG 100 45
        yaaA 1220944 .. 1220970 - -11.7  -2.54896   GGTTGAGCGAAGCGA        TACCCATCG-GC ATTG GCTCGATGGGTA         GCGTCGCTGCGCGCC  64 93
        algD 1218678 .. 1218690 -  -3.3  -3.30124   GGGCACCCGGCAGAA                CTGAG CTT CTCGG                CGGTCGTTGCGCGCC  47 78
        alg8 NONE
D3880_RS05600 NONE
        algK NONE
D3880_RS05590 1212767 .. 1212785 -  -3.7  -3.23216   GCCGAGCAGCAGCAA             GGCGGCG AGCAG CGTCACC             CCTCGCCAGTTTACG  45 231
        algG NONE
D3880_RS05580 NONE
D3880_RS05575 1208302 .. 1208332 -  -2.5  -3.05384   CGTTTCTCCATCGAA      GAATTGTCAGGGCC ACCT GGCCC-ACCCATTC       CTCCCCGGTATTGCA  41 373
D3880_RS05570 NONE
D3880_RS05565 NONE
D3880_RS05560 NONE
D3880_RS05555 NONE
D3880_RS05550 1201009 .. 1201063 -  -7.7  -3.59402   CCCACAGGAAATCAA GTTCTGCGGCCACGCGCCTGGGCG TTGCGGTC CGCCACGGGGCG-GCCGGCAGAAC TGAGCTTTTCGGCGG  64 91
D3880_RS05545 1199445 .. 1199455 -  -2.4  -2.62184   GGTGGGCTCACACCA                 GCAG CAG CAGC                 GTGGCGATGAACAGA  38 7
D3880_RS05535 NONE
        algK NONE
D3880_RS05525 1195088 .. 1195137 -  -7.8  -3.85698   GTCGTCGCCCATAAA TGGGCGAGGGG-GCGGTCCGC-AGC CAG GCTAGCGG-CTGAGCCCCTCACCCC AGACATCTCCGGTGG  69 239
        algG NONE
D3880_RS05515 NONE
D3880_RS05510 1190803 .. 1190813 -  -2.4  -4.09685   GCGTAGGGTGGAAAA                 CCGC GAA GCGT                 TTTCCTCCGTTCACC  57 36
D3880_RS05505 NONE
D3880_RS05500 NONE
D3880_RS05495 NONE
D3880_RS05490 1184998 .. 1185019 - -10.1  -3.72576   TGCGGGGCGAGGAAA           GCCCCGC-GC CCG GCTGCGGAGC           ACGGCCAGTCCCTGG  76 288
D3880_RS05485 1184361 .. 1184376 -  -3.2  -4.74706   CTCAACACTTAAAAA              GGAGAG GGCG CTGTCC               GGGCGCAGGGCTTGG  74 89
D3880_RS05480 1183039 .. 1183080 -  -5.1  -4.06904   GTATCTAACTATAAA TAGACACCACATGGTGTGT TTAA ACGCACCAGTTGGTGCATA  ACATTCCTTGTCATC  61 204
D3880_RS22650 NONE
D3880_RS05475 1181976 .. 1182002 - -11.5  -3.06133   TAACGCTTGAGTTAA        GGCCG-CGACCC GTCA GGGACGTCGGCC         TTCAACGAATTGTTG  68 58
D3880_RS22645 1181293 .. 1181311 -  -3.1  -4.18161   GAGAAATTTTGAAAA             CCCTC AATAGGTGG GAGGG             TGTCATAAATTTGTA  62 280
D3880_RS05465 1180462 .. 1180483 -  -2.1  -4.03413   AGCGCCCCACAGAAA           CGG-CGCGAG GTA CAAGCGTCCG           GCGACCGAAGGGCGC  57 57
D3880_RS05460 NONE
D3880_RS05455 NONE
D3880_RS05450 1178165 .. 1178178 -  -3.1  -3.71649   CCGGGAAATGCCAAA               GTGCTC ATT GAGC-C               AGCCGAGTCGTTCGT  54 121
D3880_RS05445 NONE
D3880_RS05440 1176846 .. 1176858 -  -3.3  -4.56775   ATGCTGCGTTAAAAA                CAGGC TCG GACTG                CTCATTTACAACTCG  68 164
D3880_RS05435 1176031 .. 1176081 - -10.4  -3.15544   CGCGAGCGGGACGAA GCCGCCCTGGCGGTAC--AGCGCCG CGCT CGGCGCTCAGTCCCGCGCGGGCG-C ACCCAGCGGGAACAG  65 8
D3880_RS05430 1175332 .. 1175345 -  -3.7  -3.30124   GCGGAGCGGCGACAA               CGCTC TAGC GTGCG                GTTATCGGCGCATTT  47 54
D3880_RS05425 1174100 .. 1174110 -  -2.4  -4.09685   GCGTAGGGTGGAAAA                 CCGC GAA GCGT                 TTTCCACCACCAGTG  57 198
D3880_RS05415 1171965 .. 1171977 -  -4.7  -3.34962   GGCCACAGGCTAGAA                CCCCC GTA GGGTG                GGTTGGCGGCGCAAG  49 220
D3880_RS05410 1169710 .. 1169735 - -10.3  -3.02461   CAACGGCGCGCAACA         GGCGCTGCGCG ACAG CCTGCAGCGCC          AGCCGGATTTCGCCC  60 525
D3880_RS05370 1162372 .. 1162394 -  -7.7  -3.36878   GGTATCGACCGAGAA          GCCTG-GGCG TCGG CGCCTCAAGC           GCGAGCAGGCGCCGG  59 281
D3880_RS05345 1160095 .. 1160112 - -12.7  -3.34398   CCTCGTCGGCAAAGA             GGGGCGT CGGA ACGCCCC              CGGTTGGTCTCAGAA  76 35
D3880_RS05340 1159089 .. 1159103 -  -5.6  -3.35775   ATCAGGCGTTAAACA               CTGCCT CGG AGGCCG               CTTGCGGCTAACGCC  52 368
D3880_RS05335 1157255 .. 1157275 - -16.1  -5.04601   CGGAGAAAGCAAAAA            GGGGCGACC CAT GGCCGCCCC            TTTTGGTTGTCGCTT 100 53
D3880_RS05330 1156757 .. 1156791 - -15.8  -2.51464   GTAGGATGGAGCAAC     GCGATACCCATCGC GATCTAG GCGTTGGGTATCGC     TACGCTCCACCCAAC  78 90
D3880_RS05305 1150881 .. 1150898 - -11.3  -3.18582   CATGCCAGCGAGGAA             CAGCAGC AACT GCTGCTG              CGCGCGCGTTTGCCG  64 258
D3880_RS05245 1133146 .. 1133170 -  -9.9  -2.52464   GCGCCGCCGAACTGA          TCCGCGAGCTG GGG CTGCTCGCGCA          CCCGGAGGGCGGCTA  56 511
D3880_RS05230 1131567 .. 1131591 -  -3.4  -3.85698   TCGGGGCTGGACAAA         GGGCGACCCGG CAGG CCGGG-CGGCG          GACTGGGTCACGTTA  56 101
        folM NONE
        folE NONE
        folX 1129858 .. 1129878 -  -4.6  -3.16971   TCACGAGACATTGAA           CCGGCTCTC AGCG GTG-GCCGG            CCAGGGTGATCGACA  48 12
D3880_RS05210 NONE
D3880_RS05205 1128734 .. 1128752 - -13.8  -5.06816   AGCGCCTAACAAAAA             GCCCCGCC TAG AGCGGGGC             TTTTTGTTGGGCAAG 100 265
D3880_RS05190 NONE
        cysZ 1123873 .. 1123885 -  -4.7  -4.09864   ATCTAGGGTGGAAAA                CCCGC GAA GCGGT                TTCCCACCGAGAGAG  61 94
D3880_RS05180 1123149 .. 1123161 -  -2.6  -3.93136   AGATTTATTTATAAA                GCAG ACCGG CCGC                TTCTGGCTGCTCGCC  54 323
D3880_RS05165 1122083 .. 1122104 -  -8.7  -4.18018   GCTTCTTACTGAAAA           CCTCTCCCC TGAT GAGAAGAGG            CTTCAGGAGGCTCCC  79 42
D3880_RS05155 NONE
        aguB NONE
D3880_RS05145 NONE
D3880_RS05140 NONE
D3880_RS05135 1115760 .. 1115780 -    -9  -3.52079   CAACAGTCGACAGAA            GCGGACCT TCAAG AGATCCGC            AAGGCCAGGAGCGGC  66 60
D3880_RS22915 1114433 .. 1114456 -  -3.8  -3.19463   CGGATGATTGACGAA          GCATTTCTGA ATAA TCTGAAGTGC           CTCTGCGGTTTTTGT  45 47
D3880_RS22910 1113767 .. 1113785 - -11.6  -3.06133   TAACGCCTTAGTTAA             CCGGCGCC GTA GGCGCAGG             CCGGAGGGTACCAAT  68 136
D3880_RS05115 NONE
D3880_RS05110 NONE
D3880_RS05105 NONE
        lpdA 1105962 .. 1105980 -  -5.8   -3.4072   CAGCCGCGACTACAA             CGCCGTCG AAG CGCCCGCG             TACGAAATCCAGAAT  53 276
D3880_RS05080 1102154 .. 1102164 -  -6.8  -3.05384   TGCGGGGTGACCCAA                 GCAG AGC CTGC                 GGCGCTCACTGGCCC  52 31
D3880_RS05075 1100363 .. 1100375 -  -6.2  -3.18264   GCGTCGACGCATTAA                GCCG CTCAT CGGC                GGAGTTTCGCGCCCT  51 375
D3880_RS05065 1096977 .. 1097024 -  -9.9  -2.57013   GCTCAACCCAACCTA CGGTTCTGCTATCCCCTCTCCCA TAAA TGGGAGAGGGG--AGCCGGAGCG GCGTATCGTTCTGGC  60 48
D3880_RS05035 NONE
D3880_RS05030 1091369 .. 1091397 -  -5.4  -2.82516   TTTTCCACCACCATA       GCGGTGGATGT AAAAAGCG ACATCCACC-C        TACGGCCCATTCAGC  46 36
         pta 1089087 .. 1089107 -  -6.7  -3.14132   CGCCGGGGTGATGAA            GCGGCCATG TTC CCTGGCCGT            GGAGCATTTTGGCGC  54 94
D3880_RS05020 1088084 .. 1088101 - -14.1  -5.31275   GGGGAGCACAAAAAA             GCCCGCC GATT GGCGGGC              TTTTTCATGGGCGCG 100 43
D3880_RS05005 1085061 .. 1085095 - -10.1  -3.01924   GACCCGCGTGTAACA    GAC-CGCTACGGCT TACCTTCT AGCCGTAGCGCGCC     ATCCCAAATCCCCGA  64 352
D3880_RS22630 NONE
D3880_RS04965 1075203 .. 1075244 -  -7.8  -3.07113   GACGAGCTGAGGGAA GGCTCTCCGCCCCCACCG TCGTCC CCGCGAAGGCGGGGACCC  TGTAGCCCGGAGGCA  56 97
D3880_RS04955 1072896 .. 1072910 -  -5.6  -3.73072   AATCCGGCCATCAAA               GCCCTG GCA CAGCGC               CTGCGAGCCCGCGGC  57 243
D3880_RS04945 1070495 .. 1070519 -  -7.8  -3.26471   GGAGGGCGACAGCAA          CATGCGCAGC GTCTG GCTGTGCACG          CGCAACGATGCCCTG  56 254
D3880_RS04935 1069155 .. 1069181 - -11.6  -3.07113   GACCAGGGTAGCCAA        CGCGCGCAGCG TCGGTG CGCTGC-CGCG         CTTATGGACGGCGGC  68 282
D3880_RS04930 1068227 .. 1068257 - -15.5  -3.53091   ATCTGCCGCTGCAAA       GAACAAGGGAGGC CAGGT GCCTCCCTGGTTC       TTTGCATTGCCGCCG  93 192
         cls 1066461 .. 1066489 -  -7.3  -3.06796   CTGGATTTCACCCAA        GCACGTGCCGCTG TGG CAGCGCGATGTGC        CGGGCCTGCAGGTCA  51 195
D3880_RS04915 1064465 .. 1064476 -  -5.8  -3.55815   AAACAGCCTCGGAAA                GCAG CTTG CTGC                 TAACGCGCTTCAGCG  55 72
D3880_RS04890 1054793 .. 1054822 - -20.9  -4.85599   GCGAGGGGATAAAAA       CAAAAAGCCCCGC ATCG GCGGGGCTTTTTG        GTCTTTACGGTGAGG 100 44
        ccoG NONE
        mapR 1048780 .. 1048829 -  -4.9   -3.9941   GGGTGGATAAGCAAA GCGGTAT-CCACCCTACCAAGCCT GCC AGTCCGTGTAGGGTGGAAAACTGC GGAGCATTTTCCACC  59 246
D3880_RS04855 1044991 .. 1045005 -  -6.4  -2.72263   ATACGGCGTTGAAAT               CAGCCT CAG AAGCTG               CTTGCGGCTAACGCG  50 219
D3880_RS04850 1043825 .. 1043840 -    -9  -3.70007   ACGACGCAAAAGCAA              GTTGGC GGAC GCCAAC               CCTGTAGGCGCGAAT  68 94
D3880_RS04845 1042025 .. 1042071 - -11.7  -2.93723   GGTCGACTAATCACA TATGACACGCGCG-CCTG-CCCA CCC CGGGTCAGGTCGTTCGTGTCATA GGTCTTGTCAAACCG  66 193
D3880_RS04840 1041372 .. 1041387 - -10.4  -3.54543   AGGCATTGGCCGAAA              CGCCAG CCAG CTGGCG               CCGGGATAGCGTCAG  70 45
D3880_RS04835 1040834 .. 1040844 -  -6.8  -2.63585   CGAGATCGTAAACAG                 GCTC TGA GAGC                 GGTTTCAGGGTAAGG  49 30
D3880_RS04805 1036044 .. 1036063 -   -15  -3.88232   TCGCGCAGACAAGAA            CGGCGACC CGAG GGTCGCCG             TTTTGCGTTAGAACC  93 60
D3880_RS04795 1035133 .. 1035149 -  -7.9  -4.72272   GCGCCTTACGAAAAA              GCCTGGT TTG ACCGGGC              TTTTTTGTGCATGAA  81 43
D3880_RS04785 1033993 .. 1034013 -  -8.9  -3.17075   GTGGGGCGAAGCGAA            GCCGGTGCA GAG CGCATCGGC            GTGGAGGCGGGGCCC  61 130
         mqo 1032247 .. 1032262 - -11.8  -5.64274   GCAGGCATAAAAAAA              CCGCCC AGGA GGGCGG               TTTTTTATTTCAGCG 100 50
        dauA 1028962 .. 1028976 - -12.8  -3.09492   TGGCGAAGGCGAACA               GGCGCC TTG GGCGCC               GCGCGAAGGTGAGGC  69 53
         upp NONE
D3880_RS04740 1025775 .. 1025791 - -15.1   -4.4078   GGCCCCGAACGAAAA              GCCCCGC AGT GCGGGGC              TTTTTTGTCGTTGCG 100 43
D3880_RS04720 NONE
D3880_RS04715 1020539 .. 1020555 -  -6.5  -4.06687   AGCCCCCATAAACAA              CCGGG TCAAGAG CCCGG              TTTTTTATGGGGGCG  68 93
D3880_RS04680 NONE
        lolB NONE
        ispE NONE
D3880_RS04665 NONE
D3880_RS04660 1011251 .. 1011261 -  -2.4  -2.59876   TGAGTATAGAAAATG                 GCAG GGG CGGC                 TGGATTCGAACCAAC  38 13
D3880_RS04655 1010206 .. 1010224 - -13.1  -5.00616   GCGGTTGGCAAAAAA             GCCCCGC ACTAG GCGGGGC             GCTTTTCGTTCGGCG 100 62
D3880_RS04650 1009513 .. 1009525 -  -2.6  -2.66964   GCAGTCACGACAGGA                GCCC CCTTC AGGC                CAGACGAGTATTACT  38 36
         pth NONE
        ychF NONE
D3880_RS04635 1007588 .. 1007609 - -15.9   -5.4833   GCAGGCAATAAAAAA           GGGCCTAGC TTGC GCTAGGCCC            TTTTCTTGTTTGGTG 100 36
D3880_RS22865 1006863 .. 1006874 -  -2.2  -3.05463   ATCTGCTGGAGCTAA                GCCGC GGC GCG-C                ACTTCGCCCTGAGCC  41 303
D3880_RS04610 1003333 .. 1003352 -    -7  -3.60792   CCGTCAAGCCGGAAA            GCCAGGGC CGCG GCCTCGGC             CTGCGCCTGCTCGAG  58 257
D3880_RS04575  995402 ..  995412 -  -2.4  -4.09685   TCGTAGGGTGGAAAA                 CCGC GAA GCGT                 TTTCCACCAGAAGGT  57 92
D3880_RS04570 NONE
D3880_RS04565  991772 ..  991799 - -17.1  -5.10461   GCCAGGCAAGAAAAA        CGCCGCTTACC GAGAAA GGTAAGCGGCG         TTTTTTATGGCGCCC 100 56
D3880_RS04485  975544 ..  975564 -  -8.9  -3.72893   GACCGTCTGATCAAA            GGGGCGATC TAA GACCGCCCG            AGTCGGCTTACTGGC  71 33
D3880_RS04465  970426 ..  970437 -  -3.6  -3.53012   TGCGGCGCGTTTAAA                GCCC CGGC AGGC                 GTTGCCGAATCCCGC  49 9
D3880_RS04460  969980 ..  969990 -  -2.4  -3.53012   CCCCTTGCGCGTAAA                 TCGC TCA GCGC                 AGAGGTTGTGAGCTA  47 38
D3880_RS04455  968882 ..  968900 -   -16  -5.75342   TGCGGGCAAAAAAAA             GACCCGGC AGA GCCGGGTC             AAAAACCGTGATTAG 100 233
D3880_RS04420 NONE
D3880_RS04415  960033 ..  960043 -  -2.4  -4.08216   CTATGGCGTGGAAAA                 CAGC CGG GCGG                 ATTTTCGCCTGGACT  58 427
        dksA  957840 ..  957870 - -16.9  -3.88291   CATCAGGGGTATAAA      CGA-AGCGGGGCGC CTAA GCGCCCCGCTGCCG       GATCAGGATCCGACC 100 28
      gluQRS NONE
D3880_RS04390 NONE
D3880_RS04385 NONE
D3880_RS04380  952185 ..  952213 -  -7.4    -5.252   GATGGGCAGAAAAAA       GCCGGGT-TCGCG TTAC CGTAAGACCCGGC        TTTGTTACGTGATGT  93 95
D3880_RS04375 NONE
        folK NONE
        panB NONE
        panC NONE
D3880_RS04355  947420 ..  947437 - -12.7   -4.8048   TTTGGACAGTAAAAA             GCCCGGA ACGC TCCGGGC              TTTCAGTCTAGCGGT 100 48
         pgi  945663 ..  945687 - -17.2  -3.02186   ACACCGCAGAAAGCA          CGAACCCGGC ACGGG GCCGGGTTCG          CAAGGTTTCCGCCGA  87 48
         acs NONE
D3880_RS04340  942593 ..  942606 -  -5.2  -4.72986   GATCCTCAGGAAAAA               GCGG GTCGAG CCGC                GGCTGTCGTATGGTT  78 101
D3880_RS04335  941355 ..  941373 - -13.1   -5.1356   GTTTATCAAGAAAAA             CGCCGGC ACTTG GCCGGCG             CTTCCTTGGCATCAG 100 45
D3880_RS04330 NONE
D3880_RS04325 NONE
D3880_RS04320 NONE
D3880_RS04315 NONE
D3880_RS04310  934892 ..  934913 -   -13  -3.29947   CACGCAGCACAGCAA           CCCACCGG CTTGTC CCGGTGGG            TTTTTCGTCTATGGA  76 44
        yhbY  916653 ..  916667 -  -2.7  -4.36914   CGGCGCTGGACAAAA               TCGGC TTGGC GCCGC               TGCTGATCGAAGCGA  66 333
        recN  904973 ..  904989 - -13.7  -5.38054   GCGGACAAATAAAAA              GGCGACC TCG GGTCGCC              TTTTTGCTTTTTACG 100 50
        bamE  903871 ..  903889 - -13.1  -5.28176   TTCAGGTACAAAAAA             GCCCGGC ACTTG GCCGGGC             TTTTTATTGGCAGGG 100 47
        smpB  901953 ..  901977 -  -2.8  -2.55999   CTATTGGAGAGCAAC         CCCG-AGG-CGC AGC GCGACCTGCTGG         AGTTCCGACATACTC  39 493
D3880_RS04140  899685 ..  899704 -  -4.2  -3.11634   GGGGAGAGCACTCAA            TGCACCAG CATG CCGGTGAA             CACATAGGCTTGCGC  46 2
        lldD NONE
D3880_RS04130  895398 ..  895415 - -14.1  -4.24342   GGGCCGACCAAGAAA             GCCCCGC GCAG GCGGGGC              CGAGTGCAGCGCCTC 100 39
D3880_RS04125  894984 ..  894994 -  -2.4  -3.86202   CTTGAGTATAGGAAA                 GCCG GCG CTGC                 TGGTTAGCTGATGCC  54 29
D3880_RS04120 NONE
        ssrA  891211 ..  891227 - -10.8  -4.63048   TTCAGAAACAAGAAA              GCCCGC ACGGG GCGGGC              TTTTCAGGGGTGTTT  89 74
D3880_RS04105 NONE
D3880_RS04100 NONE
D3880_RS04095 NONE
D3880_RS04090  887864 ..  887900 -  -5.2  -3.67588   GAAACGGCATTGAAA   CCCCGTCATAAC-GGCA TCGC TACCTGCTATGACGGCA    ATGTTTACCCGCTAT  54 8
D3880_RS23025  886653 ..  886664 -  -5.8  -3.01924   CAGTCTTTTGGAACA                GCCT AATC AGGC                 GGCGACACGATCAAA  49 331
D3880_RS04080  885582 ..  885603 -  -6.5  -3.40403   CGGTCTCTACGAGAA           CCACCTCAG CGAG CTGAAGGGG            CTTGTTGCTGAACTC  55 500
D3880_RS04020  870514 ..  870532 -  -8.8  -3.18264   GCCTGGATGCAGCAA             CCCCGC GGTTCTG GCGGGG             CGCATTGATCAAATG  61 184
D3880_RS04015 NONE
D3880_RS04010  868120 ..  868144 -  -3.5  -3.85698   GCGCTCGGTTAGAAA          CCCGGCCAA CTCACGC TTGAGCGGG          CAGAAAGCCCGCGAT  56 306
D3880_RS03960  857698 ..  857724 -  -4.2  -2.82933   CCGTAACCGACCAGA         TCGCGCGCGGCC ATC AGCCCAGCTCGA         AGGTGGTGACGCCGA  43 12
D3880_RS03955  856372 ..  856406 -    -5  -3.53012   CTTGGGCTGCGGAAA    CGGGATGTGGAAGCG ATGGGG CGCCGC-ACATCCCA     TTGGTGAATGAGGAC  52 437
D3880_RS03950  849821 ..  849850 - -19.3   -4.4078   GCGGCCCAATGAAAA       CGGCCTGGCCCCC TTGC GGGAACCAGGCCG        TCCACCCTCAATGGT 100 43
D3880_RS03940  847670 ..  847680 -  -2.4  -3.09327   CTACGCGAGCGAATA                 GTCG CCC CGTC                 CCTCCTTGACCCACC  41 71
D3880_RS03870  832204 ..  832214 -  -2.4  -4.09864   ACCTAGGGTGGAAAA                 CCGC GAA GCGT                 TTTCCACCGAAAATC  57 83
D3880_RS03865  830819 ..  830842 -  -2.2  -4.07568   GGCTCTGGTGGAAAA          CGCTGCGCGG TTTT CCACCCTACG           GCGATCGGTCAGTGC  57 41
D3880_RS03860 NONE
D3880_RS03855  828269 ..  828317 -  -3.3  -4.79756   GAGACAAGGCAAAAA CGGCC-GAAAAAGCGCAGTTTAC GTGCG GTAAA-TGAGCATTTTGAGGCCG TTTTTAACGCCGTAT  74 152
D3880_RS03845  827672 ..  827685 -  -3.8  -4.56597   CGCGCCGCGCAAAAA               CAGG CCCGTC CCTG                CGGGTTGCGCGGCAA  68 177
D3880_RS03840  824987 ..  825015 - -11.7  -3.32997   TCTGGACAAATCGAA        GGCAGCCTCGC CGACAGC GCGACGCTGCC        GCTCAAGTTCGAACC  68 422
D3880_RS03815  818310 ..  818321 -  -2.2  -4.30576   CGCTCATCATCAAAA                GCGT TTTT ACAC                 AGCCTCGGTTGTTTT  63 240
D3880_RS03810  814674 ..  814685 -  -2.2  -3.63266   AAAATTGACCTGAAA                TGGA CGTT CCCA                 GGTGTCTACGAAACC  49 70
D3880_RS03800 NONE
D3880_RS03795 NONE
D3880_RS03790 NONE
D3880_RS03785 NONE
D3880_RS03780  810812 ..  810825 -  -2.4  -4.17048   TGGTGGTGAAAATAA               CAGT TAGACC ACTG                CAAAGGGTCGGAAGC  60 451
D3880_RS03770  809772 ..  809790 -  -7.4   -3.6284   AAGCAGGACTGGAAA             CGTTGGCT GGC AGCCAATG             GAGGCTCGCCGCTGG  63 332
D3880_RS03760 NONE
D3880_RS03755  806423 ..  806462 - -21.8  -4.07568   GCCTGGGTCGGAAAA  CAGAAAACCCTCGG-GAAA TGA TTTCTCCGAGGGTTTTCTG  TTTCTAGGCCCCGAG 100 91
D3880_RS03740  803410 ..  803429 -    -7  -2.53911   CGAAGGCGTAACCCA            CCGACCGG CCGT CAGGCCGG             CAATCGCGGTGCTCG  48 124
D3880_RS03735  802466 ..  802493 - -13.6  -3.08133   CAGGCAGTCACGTAA        GGTGGAAAACCGC GCA GCG-TTTTCCACC        ATCGTGGTGGTGGAT  76 86
        mmsB NONE
D3880_RS03725  800340 ..  800373 - -16.1  -3.59966   ATAGTCGAGATACAA     GGGTGGGTTA-GCCGC GTA GCGGCGTAACCCACCA     GCGGTGCCGCCCTGT  93 90
D3880_RS03720 NONE
D3880_RS03715  797618 ..  797666 -    -4  -4.57837   ATACGGCGTTAAAAA CAGCCTCAGAATGCTCA-TTTACA ACT CGTAAACTGCGC-TTCTTCGGCTG TTTGACTCGCTCCGC  68 240
D3880_RS03705 NONE
        fdhD NONE
D3880_RS03695  793089 ..  793124 - -20.4  -2.78715   AAGCGCCGGACCACA    CCACGCCGGCCCCGGA GCAG TCCGCGGCCGGCGTTG     GGTCGTGTGGGACGT  95 236
D3880_RS03675  789503 ..  789541 - -17.3  -3.06915   AGCGACGTGATGTAA   GCCCGGACGGCGGCGCG GTTCT CGCGCCGCCGCTCCAGC   GTTGTCTGCGGCGGG  87 208
         ada NONE
D3880_RS03655  785195 ..  785242 - -17.6  -2.79183   CCCACGTGTAGGAGA GGGGCCGGGGGAGAGGGCGGAT GGCA ACTCGCCCTCTCCCCAGCCCTC TCCCGTAAACGGGAG  84 285
D3880_RS03635  779141 ..  779162 - -10.1  -4.30844   ACTGCACTATTAAAA           GGGGGCGAA GCGA TTCGCCCCT            TTTTTTTGTGGGCGC  87 365
D3880_RS03625  776596 ..  776615 - -10.7  -5.42862   ACATGGCCAAAAAAA            GGCCAGC GCTAAG GCTGGCC             CGAGTGACACCTCGC 100 79
D3880_RS03615  775222 ..  775238 -  -3.7  -3.57792   CCACGCATTTGCAAA              CGGAA TGACCAC TTCCG              CGAGCCACCCGCCCG  51 208
D3880_RS03610  773890 ..  773913 -    -6  -2.57132   CCGTTCTCGCAGAAG          CTCGCCGA CTACTTGC TCGGCAAG           GGCAAGTTGCAGGTG  46 370
D3880_RS03600  771175 ..  771204 -  -2.1  -3.14344   GAGTGCGCTGAGTAA       GAAAATACGGCCA AGCA TGATCGCATCTCC        TTCGAGGTTGACGGC  43 262
D3880_RS03595  770805 ..  770825 -  -8.9  -3.01712   TTTTGCCGGCCAAGA            CGCCGCGCT ACC AGCGCGAGG            AGCGGTAATAGTCCC  60 12
D3880_RS03590  770276 ..  770293 - -14.1  -4.44667   GCCTTGAACAAGAAA             GCCCGGC TTAG GCCGGGC              TTTTTTGTGAGCGGG 100 129
D3880_RS03580  768488 ..  768506 - -10.2  -3.31144   GTGTCAGGGCCACAA             CCCCACGC GTA GCGCGGGA             GCGATCCATAGTCGC  68 50
D3880_RS03575 NONE
D3880_RS03570  765833 ..  765852 - -13.6  -5.54907   GTCAGAAAAGAAAAA            GGCCAGTC GCGA GACTGGCC             TTTTTCGTCGAGCAG 100 55
D3880_RS03565 NONE
D3880_RS03560  764207 ..  764226 - -13.6  -4.70583   TTGATGAACACAAAA            GGCCAGTC GAGA GACTGGCC             TTTTTGTTTGCAGTG 100 74
D3880_RS03540  758994 ..  759041 - -10.1  -3.09516   GTCTGTAGGAGCGAA TTCATTCGCGATAACCGACAAC AGCGA ACCGTCG-CCATCGCGAATGAA TTCGCTCCTACCGGG  64 57
D3880_RS03535  757860 ..  757870 -  -2.4  -4.09685   CCGTAGGGTGGAAAA                 CCGC GCA GCGT                 TTTCCACCAGAAACC  57 81
D3880_RS03530  756199 ..  756248 - -15.1  -2.96274   TGGTGGATAAGCACA GC-GTTATCCACCCTACCCAGCCT GCC AGTCCGCGTAGGGTGGAAAACTGC GAAGCATTTTCCACC  79 93
D3880_RS03520 NONE
D3880_RS03515  751884 ..  751919 - -18.9  -4.85599   CGCAGCGCAGAAAAA    CGCGCGGCGCCGGCC GGTGAA GGCGGGCGCCGCGTG     CTTGACAGGTTGCCG 100 73
D3880_RS03510 NONE
D3880_RS03505 NONE
D3880_RS03500  749356 ..  749374 -  -3.9  -3.55525   CAAAAGAACAGAATA            TCGAGCAT GCCG ATGC-CGA             AACGGCATCAGTGCT  49 227
D3880_RS03495  747923 ..  747945 -  -6.9  -3.21099   CTGCTCGAGCACGAA           CGCGAGCTG GCCAT CGGCTCGCA           GGCCGCGCCGGGCGC  52 492
D3880_RS03470 NONE
D3880_RS03465  742758 ..  742770 -  -3.3  -2.61383   ATGCTCATTTACAAC                GCGTA AAC TCCGC                TTCCTCAGCCGTTTT  40 208
D3880_RS03460  741301 ..  741320 -   -10  -2.55253   ACGAAGCCCAACGGA            CGGCATTG ACTC CAACGCCG             TTGTCGATTCCCGCT  60 49
D3880_RS03455  740607 ..  740624 -    -7  -3.63694   AGTGATGCCCAACAA             GGAGTC GCAGGT GACTCC              CAACGTTCGATCTCG  60 250
D3880_RS03420  732114 ..  732131 -  -6.9  -3.72241   CAGCAATTAGGCAAA             GACAGGC AAGG GCCAGTC              AAGGGACTGACCATG  63 147
D3880_RS03415  731476 ..  731503 -  -8.2  -3.47841   AGACCTACAGCATAA        CGGGCCGGGCGG CTTG CTGCCTGGCCAG         GTCGGTCATCGCAAC  62 392
D3880_RS03410 NONE
D3880_RS03405  729330 ..  729342 -  -9.1  -3.19157   GACCAACGGGAGTAA                CAGCC GCA GGCTG                GCCCAAAGGGCGAGC  61 228
D3880_RS03370  721971 ..  721985 -  -4.2  -3.01712   CGCCCTGGCTGAACA               CGCC AGACTGA GGCG               GGCCTGTTAGCGCAG  46 32
D3880_RS03360  719668 ..  719679 -  -7.2  -3.39844   GGGAGAGGGGAAACA                GGCC GCTC GGCC                 CTCTCCTGAGCAGCG  56 212
D3880_RS03355  718834 ..  718861 -  -2.5  -3.25823   GGTCGGCCAGATCAA        CGCCCGGCTGC TGCGCT ACCGCCGACCG         GAGTACTGGCTGCGG  44 385
D3880_RS03335  712601 ..  712635 -  -7.8  -3.65902   CCCACCCTACGGAAA    CACCGAGCCGCG-GC AGTCAG GCGCGGGGCTCGACG     ATCAGGCGCAGGCGT  64 27
D3880_RS03325  711586 ..  711598 -  -4.8  -3.05816   GTAGTCCGGATGCAA                TCCG GGGCG CGGA                GCTGTCTGCTACTCC  46 75
D3880_RS03320 NONE
        cueR  708461 ..  708499 - -10.2   -3.1247   ATCCGCGAGATCGAA  GCGGCGCGGCTGGACGA ACTGCG CCGTCAGGCCG-GCCGC   ATCGAGGCGGAAGGC  62 176
D3880_RS03295 NONE
D3880_RS03290  704101 ..  704120 - -10.6  -3.31144   GCGCCATGCCGACAA            CGCCGCCG CCCT CGGTGGCG             GGTTGCAGCGCCTGG  66 99
D3880_RS03275  699047 ..  699089 -  -3.2   -3.5393   AGCAGGCGCTGCAAA CGCCCCTGCAGCCGCGCCG TCGCCC CGGCGCAG-TCCTGTGGCT GCGTTGCCTGGCGGC  49 76
D3880_RS03265  697644 ..  697654 -  -4.6  -2.50113   CAGGAGCGCAGGAAC                 CCCA TGG CGGG                 TCAGCTGGCCTGTTT  42 26
D3880_RS03260 NONE
         ppa  696154 ..  696170 - -10.8   -5.4251   TTCAGACATAAAAAA              GCCGGC TTGTG GCCGGC              TTTTAGGGGGTGGCT 100 46
D3880_RS03250  693928 ..  693958 -  -5.2  -2.87881   GAATTGCTGCATACA       CCCGCTCGTGGCGT AAC AGGCACCGAGCGTG       AACGTGATGAACCTA  46 519
D3880_RS03140 NONE
        ispA  670150 ..  670167 - -14.1   -5.4505   GGCTTGAATAAAAAA             CGCCGGG CATG CCCGGCG              TTTTTTATTGCGGCT 100 46
D3880_RS03125 NONE
D3880_RS03120 NONE
         dxs  662225 ..  662247 - -13.4   -4.8048   TCGGTACAGCAAAAA           CGCCGCGC ACCTTAA GCGCGGCG           GGGTAAGAGTACAAG 100 233
D3880_RS03110  659969 ..  659995 - -23.8  -4.15044   GCTGCGGCCAATAAA         CCAAGGCCCCGC AGT GCGGGGCCTTGG         CGTTTTCGCGGGAGG 100 43
D3880_RS23000 NONE
D3880_RS03085 NONE
D3880_RS03080 NONE
D3880_RS03075 NONE
D3880_RS03070  653483 ..  653498 -  -4.6  -3.53733   CCCATCCTACAAATA              GCGGCT CCAC AGCAGC               TTGGCCTGGCTGCTC  52 1
D3880_RS03015 NONE
D3880_RS03010 NONE
D3880_RS03005  642773 ..  642793 -  -5.3  -2.52464   GCTGCCGTCAACCGA            TGGGCTCTG GGA CAGCGCTCA            GGCGTTGCTGCGGCA  44 255
D3880_RS02995 NONE
D3880_RS02990 NONE
D3880_RS02985 NONE
D3880_RS02980 NONE
D3880_RS02975  638331 ..  638363 - -22.2  -2.62184   TCGGGCGCTAGAGCA      CGAAAAAGCCGGCG ATAAA CGCCGGCTTTTTCG      TATGCGCGGATGGCT 100 41
        uvrA  631598 ..  631625 - -15.5  -5.10461   GCGATCCAAGAAAAA        GCCCCGGGGCC ATTGCA GGCGCCGGGGC         TTTTTCGTTGAGGCC 100 44
D3880_RS02660 NONE
D3880_RS02655  583997 ..  584028 - -10.9  -2.87132   TTCGCTGGTGAGATA      GCTCAACGCCGTGC CCAGT GCACGGCGTTGT-C      GTTTCTGCACTGTGG  66 50
        hemJ NONE
D3880_RS02635  580755 ..  580772 -  -7.7  -3.29511   CGCACGGCGCGACAA             GCGG-CGT CCA ACGGCCGC             GGTCACGCCATCCGC  59 48
D3880_RS02630 NONE
D3880_RS02625  578610 ..  578621 -  -7.2  -3.88559   AAGCAGCCTCAGAAA                GCCG CTTG CGGC                 TAACGCGCTTTAGCG  65 208
D3880_RS02615 NONE
        coq7  575865 ..  575893 - -16.1  -4.30809   GAAGAGGTAGGAAAA        TAAAAAGGGCGCC ATT GGCGCCCTTTTTG        TTGTCCGCAATTCAG 100 37
         crp  573300 ..  573316 - -15.1  -4.72272   TCCGCCCACGAAAAA              GCCCGGC ACT GCCGGGC              TTTTTCGTTTCTGCA 100 49
D3880_RS02530  558206 ..  558218 -  -4.8  -3.31792   CCATCACCCGGACAA                GCTG GCCGG CAGC                GGCGCCAATCCGGCG  49 118
D3880_RS02510 NONE
D3880_RS02505  551642 ..  551660 -   -16  -5.36441   GGCGGACATAAAAAA             GCCCGGCT TGG AGCCGGGC             TTGGATGTTTCTACA 100 46
        pdxA  550450 ..  550478 -  -7.3  -2.53911   CCAAGCTTCAAGCCA        CACGCTCAAAGCA CAA TGCAAAGAGCGTG        CAGTTTACCAAGCAA  48 109
        rsmA NONE
        apaG NONE
D3880_RS02485 NONE
        glpE  548052 ..  548062 -  -6.8  -2.53903   GGCGGGAAAAATTAT                 TCCG CGG CGGA                 TTGGCTGGTTTCGTT  48 11
D3880_RS02475  545813 ..  545833 - -10.3  -3.01712   GGCTCTGCGGTAACA            GCGACCGGC CAG GCCGGCGGC            GGGTTACTGCGATTT  64 29
D3880_RS02470 NONE
D3880_RS02465  542765 ..  542776 -  -7.2  -3.16039   AATCAGCCTTAGCAA                GCCG CTTG CGGC                 TAACGCGCTTTAGCG  54 179
D3880_RS02460  542127 ..  542157 -  -3.9   -3.4678   AGGCCCACAGCATAA      CCCCTG-CGCGGCCG CTC CGG-CGCTTCAGTGG      GCCGGCGGAATCTGT  49 19
D3880_RS02455  540506 ..  540533 -  -5.4  -4.18197   ACCGTCGACTGAAAA        TCATCGAGGCCG ACAA CGGCCGCTATGC         GCCGACCCGCAAGGG  69 356
        plsY  538915 ..  538943 -   -11  -3.15427   AACACTTGGCAGCAA       TGCCGCGCCGCCG GCGA CGACAGCGCG-CA        GACCCGTTGCGACGT  64 385
        rpsU  537724 ..  537754 -  -3.4  -5.95539   GTGGAAACAAAAAAA     CTCCGCTGATTCGCC TGTT GGCGAA---GCGGAG      TCCGTTTTTTGCTGC 100 96
        dnaG  535692 ..  535705 -  -3.7  -3.17941   ATTATACCTGATTAA               GGGGC TCAG GCGCC                AGTTGAGCTCTTGTC  45 17
        rpoD  533746 ..  533776 - -19.8  -4.66609   TAGGCTAGCTAAAAA       GCAAAACCCCCGGC AGG GCCGGGGGTTTTGG       GGTCACTCGTCGAGG 100 28
D3880_RS02415 NONE
D3880_RS02410  529807 ..  529838 - -18.9   -3.9122   CAGGGGCTGAAACAA      CAAGGGGTTAGGC TGTTAC GCCTAACCCCTTG       ATTTTATTGGTGGGC 100 33
D3880_RS02405  528219 ..  528242 -    -3  -3.04144   CTGGCATCGCCAACA          GCCAACTGAG CGGT CCCCGTTCGC           TGGGACTCGAGGGGC  42 281
D3880_RS02390 NONE
D3880_RS02385  523950 ..  524005 -  -4.5  -3.19602   GTGTTGAGATGAAGA GCAGGGTGGCGCGCCGTG-TCCGGGA GTATG TGCCGGAGCGCTGCATGCCAGCATGC AGGCCCCGGCCGGGT  48 45
D3880_RS02380  521296 ..  521313 -  -4.1  -3.55622   CGCAACTGGCCGAAA             GCACC CTGTGGCT GGTGC              TGCCGGGGTTCTTCC  51 481
D3880_RS02315  509354 ..  509369 - -10.4   -4.0641   CGCGATTGACAGAAA              CCAGGG GCTT CCCTGG               TTTCTGCGTTTCAGC  80 269
D3880_RS22595  492724 ..  492749 -  -3.1  -3.08046   TGGTTATTCCAAAAT         GGCGAGCTGAG AAAT CGCAGCTGGCG          TGGGCTGTCCCTGCT  44 519
D3880_RS02240  491053 ..  491072 -  -9.2  -4.18506   CTACTGCGAAAACAA            GCGCCAGG ACCA CCTGGCGT             TCATGCAGGAGATCA  80 173
D3880_RS02220  486691 ..  486706 - -11.8  -4.09864   ATCCAGTCTGCAAAA              CCCCGC CTCG GCGGGG               TTTTCTTTTTTCCGC  84 53
D3880_RS02215  485274 ..  485301 - -10.6  -3.14564   CCAGCGGCTGATGAA        GCGCTGGATTGCC CTG GGCATTCCAGC-C        TTCGCAGCCATTCTG  64 471
D3880_RS02145 NONE
D3880_RS02140  469423 ..  469434 -  -7.2   -2.6914   TAGCCCGGATACAAT                CCGG GAAG CCGG                 TATCTGCGCATCTTC  50 278
D3880_RS02135  468334 ..  468348 -  -5.6  -4.07687   ACGGCGCCCTTAAAA               CAGCCG CAG CGGCTC               CTCGTCCAGGGCCGC  65 5
        osmE NONE
D3880_RS02125  467102 ..  467114 -  -4.7  -3.28712   CTGGCTGCGCGAGAA                GGGCC TGC GGGCC                GGTTAACGGTCGTCC  49 28
        osmE  464192 ..  464209 - -14.1  -4.96848   CCGCGCAGACAAAAA             GCCCGGC GCTT GCCGGGC              GCTGGCCAACTGCGC 100 43
D3880_RS02100  461209 ..  461250 - -29.7  -4.11216   GGCGCAGCGCTAAAA CGCACAAGCCCGGTACGCGC GTG GCGC-TACCGGGCTTGTGCG GGGCTGGTTGGGTGG 100 66
        ureE  460101 ..  460150 -  -2.2  -3.53224   GATGCGGCGTTGAAA GCTGGCTCGGAATGCTCA-TTTAC CTGC GTAAACTCCGC-TTCCTCGCCAGC TTTCGCCTTGCCTCG  47 70
D3880_RS02085 NONE
        ureG NONE
D3880_RS02075  458004 ..  458033 -  -7.8  -3.05816   GTACCCCGGATGCAA       TCCGGGAGGCCGG CAACT CCG-CGCCCCGGA       TTGCATCCTGGCTAG  56 43
D3880_RS02070  456332 ..  456362 -   -16  -3.71848   CGGGCTGATCAACAA       CGCCGGCCTGGCGC TGG GTGCCGAGCCGGCG       CCGCAGTGCGACCTG  85 483
D3880_RS02055  453104 ..  453134 -  -8.2   -4.2558   GAGCGTCGAGGAAAA       CCTGCTGATGGGCA CCA TCCCCATCGGCATG       GAGCACGCCGGTGCG  76 494
D3880_RS02015 NONE
D3880_RS02010  445154 ..  445197 -   -10  -2.57548   AACAAGACCATCAAG GATGCCCTCGCCGGGGCCGG CTTC CCGGCGCCGATGCCGGCCTC GACGGTGATCGTGCA  57 93
D3880_RS01945  430505 ..  430521 -  -9.4   -5.4833   GCAGGCAATAAAAAA              CCGAGC GCTTG GCTCGG              TTTTTTATCGAATTT 100 40
        queG  416224 ..  416234 -  -2.4  -4.09685   TTGTAGGGTGGAAAA                 CCGC GCA GCGT                 TTTCCACCGGCGCCG  57 67
        rsgA  414461 ..  414480 -   -15  -3.84451   GCCTGGAAAGCGAAA            GACCGCGG CCAG CCGCGGTC             TTTTTGTCTGCGCCA  93 48
D3880_RS01855  410850 ..  410871 -  -3.5  -3.53811   TGGAGCTGCTGCAAA           CCCGCCTGG AAAC CCTGGCCGA            CGATCTGATGGTGGA  51 76
D3880_RS01840  407376 ..  407391 - -11.8  -5.64274   GCAGGCATAAAAAAA              CCGCCC CGAG GGGCGG               CTTTTTCAGTGCTGC 100 44
        ahpC  406458 ..  406480 - -18.4  -4.40003   TTTCAGAAACAGAAA           CGCCCGGACG GAT CGCCCGGGCG           TTCGGGCACCAGAAG 100 87
        ahpF  404808 ..  404836 - -18.8  -5.26316   CCACCCTACAAAAAA        GCCGCCGCCCGC GAATG GCGGGCGGCGGT        CTGGGTGGGGCCGGG 100 46
D3880_RS01825 NONE
D3880_RS01820 NONE
D3880_RS01815  401149 ..  401163 -  -5.6  -3.71848   TCGCGGGATCAAGAA               CGCCCT GAG AGTGCG               CCTGAACGGCCAGAG  60 135
D3880_RS01805  397829 ..  397842 -  -3.7  -2.73159   GTAATGGGCTCAAAC               GCTGC CACT GCTGC                CGTCATCGTCATCGT  41 6
D3880_RS01800  396721 ..  396767 - -13.4  -3.06671   ACAGCCAGGCCAACA GCCAGATCGGCAGGCAGCCAGG CAG CCAGGCAGCCAGCCAGCCAGGC AGCGCCGCCGGCGCC  76 427
D3880_RS01790 NONE
D3880_RS01785  392766 ..  392805 -  -2.7  -3.28924   GACCCGCCTGGACAA GCGCCCGCA-GCCTG-GCG ATTA CGTGCAGGTGCGCGGTCGC  CTGAACGCCGACGGT  46 92
D3880_RS01775  389128 ..  389152 - -13.6  -5.29782   CATAGCCAGAAAAAA         GCCC-GCGACC GCAA GGTCGCAGGGC          TCAGGGGCAGCCCGG 100 78
D3880_RS01770 NONE
D3880_RS01765 NONE
D3880_RS01760  386947 ..  386963 - -10.8  -4.39386   GCGAAATCAGGAAAA              GCCGGC TGCAC GCCGGC              GGTGGGTGCTTCAGG  87 36
        choW NONE
        choV  384511 ..  384545 -  -6.4   -4.1721   AGGGACAGTCGAAAA    GCCCTC-ATCTCCCC TCAGGC GGGGAGCCAGAAGGC     CCGCAGTGCTGGGCT  71 337
        mdtD  381653 ..  381689 - -13.7  -4.07885   CACCCGTGCGCAAAA    CGTAGGATGGGTATCGC TGC GCTCAACCCATCCTACG    ACGCCTGGGTCATTC  95 35
        dbpA  380130 ..  380146 -  -9.3  -2.62184   GGTGCGCGCACATCA              GGCCGGC GGC GCCGGCG              CCGAGGATGATGACT  56 60
D3880_RS01730  378977 ..  379006 - -11.3  -3.52102   ACGGTATCTACAGAA       GGCGCAGAGCGCC GCTA GACGAACTGCGCC        GCCGCATAGCCCGAG  74 10
        yccS  369806 ..  369824 - -13.1   -4.8622   GCCGTGAACGAAAAA             GCCCCGC CTAGT GCGGGGC             TTTTTTGTGACGCGG 100 197
D3880_RS01685  367070 ..  367084 -  -5.7  -3.04263   AGGCGATCCCCAACA               GCTTC CCGGC GAAGC               ACGAGGTCAGCTGGG  47 487
D3880_RS01670  363395 ..  363421 - -22.4  -3.53012   TCCTGGTGCTGTAAA         CAAGAGCCCCGC ATT GCGGGGCTCTTG         TTTATAAGTAGCCTG 100 356
D3880_RS01640 NONE
        metK  354897 ..  354915 - -13.1  -5.07011   GAGATAAAGCAAAAA             GCCCCGC ACTGG GCGGGGC             TTCTTGTTTTCACTG 100 46
        ligB  352664 ..  352679 -    -6  -3.59979   TCTCGCGATTCGAAA              GTCGGC GCTG GCCGTC               GGTGGAAAATGCTTC  57 294
D3880_RS01620  351517 ..  351531 -  -4.2  -3.55946   CCAGTTCAAAGAATA               GGCC GCGCACT GGCC               CGGGTGCCGGTCGTC  52 71
        ahcY NONE
        metF  348151 ..  348165 -  -7.1  -3.63627   TGGCCAGACTTGAAA               CACGC TTGGG GCGTG               GTCCCGTCCGGTCCT  60 315
D3880_RS01600  346224 ..  346241 - -14.1  -5.29782   GACAGGCAGAAAAAA             GCCGGCG GGTC CGCCGGC              TTTTTTCATTGCTAC 100 46
D3880_RS01580 NONE
D3880_RS01575  340674 ..  340708 - -11.2  -2.52623   GTGGCGGCACAAGAG     GCGGGCGCGCAGGCGC GTG GCGCCTTCGCCGCCGG     TGCCGCGCTGTCGTT  59 314
        gshB  324693 ..  324709 -  -3.6  -2.79291   AAAGTCTATGAAGCA              CTGCGC GGCTT GAGCAG              ACGCCCGTCATCCGC  41 52
D3880_RS01515  323726 ..  323745 -  -2.7  -3.28712   CGCCCCCCCTGACAA            GCCGGGC TCAGTT GCTCGAC             AGGCGGTCGCCGCGC  44 13
D3880_RS01510 NONE
        ruvX NONE
        pyrR NONE
D3880_RS01495 NONE
D3880_RS01490  319748 ..  319767 -   -15  -3.57144   CGCTGGATGGGCAAA            GCCCGCTC GAGT GAGCGGGC             TTTTTAGTGCGCCAC  90 49
D3880_RS01470  315541 ..  315558 - -14.1  -4.27316   CCGCTGAATGCAAAA             CGGCGCC CGCG GGCGCCG              TTTTTCATGGTCTGC 100 46
D3880_RS01455 NONE
        proC NONE
D3880_RS01445 NONE
D3880_RS01440  310622 ..  310638 -  -2.1  -3.64703   GCTGGGGCACGCAAA              GGGCCTG GAT CAGGCGT              GATCCTCGCGGTGCT  49 109
D3880_RS01435  308536 ..  308550 - -12.8  -4.58283   TAATGGCTGGAAAAA               CCGGCC AAA GGCCGG               CGCGCCGGCTCAGTC 100 35
D3880_RS01430 NONE
        metW NONE
D3880_RS01420 NONE
        rdgB  305655 ..  305672 -  -3.3  -3.29144   TGAGCGTGTTCATAA             CCCCAGC CGCT GCTTGAG              CTGCGCCATGGCGCG  47 2
        hemW NONE
D3880_RS01405  303814 ..  303827 -  -9.5   -5.4505   CCGCCCAAGAAAAAA               CCGCC TTCT GGCGG                TTTTTTTAGGCCTGC 100 321
        mtgA  298789 ..  298812 -  -3.1  -3.72893   CACGCTGGCAGCAAA          TGCTCACGG GCGAGA CCTTGAACA           GTCTTTTAGACGCGG  54 43
D3880_RS01340 NONE
D3880_RS01335 NONE
        rsmD  290316 ..  290337 -  -2.9  -4.07568   GCCTTTGCGGGAAAA           GCAGAAGCA CCAT TGCTTGGGC            GAATGCCCGCAGCGG  57 98
D3880_RS01325  288821 ..  288843 -  -6.2  -3.21099   GCCTTCGACCAGCAA           CAGCGCGG GCTGGAG CGGCGCTG           GCTGGAGGAGCGCCT  51 456
D3880_RS01295  280929 ..  280952 - -15.2  -3.62275   AGTGATGAGCGGAAA          CGCGGGCGCC GGCC GGCGCCCGCC           AGTTGACCTTTAGCG  90 35
D3880_RS01290 NONE
D3880_RS01285  278618 ..  278631 -  -2.3  -2.62396   TACCGGGGTAGAGCA               CTCGA TTCA TCGTG                ACGTCCTGGCGGAGT  38 108
        coaD  278087 ..  278104 -  -4.2  -3.39327   CCGCGACATTCAGAA             CACAAT ATATGA ATTGTG              CCGCATCGACGCCCG  49 69
D3880_RS01275  277689 ..  277742 - -19.6  -2.52464   TTGCGTGGGAATGCA GCCAGGACGCTCTGCGTCCTTACC GTGCGG GATAGGGACGCGGAGCGTCCCTGC AGAGGTTCCCACGCT  88 74
         ggt  275559 ..  275581 -  -2.7  -3.30124   GGTCATGCGCCAGAA          TGT-CAGCGG TGAC CCGCTCTACA           CCGCCGATGCGCCGC  46 345
D3880_RS01245  271522 ..  271532 -  -5.4  -2.90496   GCGTCGGTCAAACTA                 CGTT GAA AACG                 GCTTCGGAATGCTCA  48 118
        ilvD  269171 ..  269189 - -13.1  -4.61873   CGGCAGAAAGCAAAA             GCCCGGC GCTGG GCCGGGC             TTTCAACAACGCTCA 100 46
D3880_RS01235  268275 ..  268292 -  -3.5  -3.33696   TCTTGTGCGAAGCAA             TGTAGACA ATT TGTC-ACA             GGTTTGACCATAGTT  47 213
D3880_RS01230  266672 ..  266691 -   -15   -5.1523   GCGACAATAGAAAAA            GGCCGGCA TCGC TGCCGGCC             TTTTCGTTTTTCTAC 100 43
D3880_RS01220 NONE
D3880_RS01215  262173 ..  262227 -   -10  -3.53012   CCCCTCTCCCGTAAA CGGGCGA-GGGG-TGACGCGCGCCCGA CTGG CCGGGCACG-GACAGCCCCCTCTCCCA TTGACGGGCGAGGGC  70 93
D3880_RS01210  260265 ..  260290 -  -3.1   -4.2828   GCGCAGCCACGAAAA         GCTCGGCGCCGA TTA CCTGCG-CGCGC         TGGGCTTCGGCGAAC  63 500
D3880_RS01160  250145 ..  250162 -  -6.9   -3.1855   TCGGCGAAGATCGAA             GGGCTGG CCTT CCAGGCC              GACGGTCGTCTGTTG  52 109
D3880_RS01140  245302 ..  245313 -  -3.6  -2.63858   GACGAGAGCGACAAC                CCGG CCTA CCAG                 CTCTTCCTTGGTTAA  40 516
        rpiA  242835 ..  242856 -  -3.5  -3.15544   CGCCATCCCCAGTAA           CGCTAGACG ACTC CGCCGGGCG            CGGGCCGGCAGCCGA  45 41
D3880_RS01120  242430 ..  242455 -  -3.3  -3.34398   CGTGTTCCGCAAACA         GGCCGACTGA TCAGCTC TC-GTCGACC         AGCGCGGCGCCCGGC  47 10
D3880_RS01110  240351 ..  240369 -  -7.4  -3.05816   GTAGCCCGGATGCAA             TCCGGG GGGCCAT CCCGGA             TGGCATCCGGGCTAC  52 66
D3880_RS01105 NONE
D3880_RS01100  237881 ..  237895 -    -7  -3.49169   GGAACAGGAAGAACA               GCCAGG CCG CCGGGC               GCATGCCGGCGAAGC  58 62
D3880_RS22845  236346 ..  236361 -  -4.6   -4.0075   ATCGAATTAACCAAA              CAGGCC ACTA GGCCTC               GGCGAGGAAGTTGAC  61 327
        serA  230938 ..  230950 -  -4.8  -3.28924   GACTGTTTTTTAGAA                CAGC ACGCG GCTG                CGGATGGTGCCGGTG  49 7
D3880_RS01055  230751 ..  230768 - -12.7  -4.72272   TCCGGCCATGAAAAA             GGGAGGC CGAG GCCTCCC              TATTTCATATCCACC 100 52
D3880_RS01045  229207 ..  229229 -  -7.6  -2.73364   GCTCTACCTCAACCA           CGGCTGGCTG CCG CAGCAAGGCG           GCGCTTTGCGCCTGT  51 209
D3880_RS01035  227772 ..  227785 -  -5.2  -3.90291   ATCTGGTCAATGAAA               GCGC GCCGTT GCGC                CGGTGCTACCTGGAC  63 160
D3880_RS01025  226154 ..  226168 -  -5.7  -2.73364   CCTTGAGGCTAACGA               GATCC GTCTT GGATC               AAGCGAGGAGTCTAG  46 69
D3880_RS01020  225598 ..  225624 -   -15  -3.04144   GCGCGAGGCGTAACA         GGGCCGCGCCCG GGG CGGGCGCGGCGT         GGCGGCTTATTCGAC  80 32
D3880_RS01010  222016 ..  222032 - -15.1  -3.06915   AGTCACCCCACCCAA              CGGGCCC GCG GGGCCCG              TTGGGTGCCGCGCGC  80 41
D3880_RS00965  210880 ..  210904 - -18.6  -4.37886   GCAGGCCCGACAAAA          CGACGCCGGC TCAAG GCCGGCGTCG          GGTACTACCGTACTA 100 45
D3880_RS00960  209498 ..  209516 -  -5.8  -3.14132   GGGGGCCGCGAGCAA             GTCTGCCG TTG CGGCCGTC             GCCCCTACCGGGCGG  50 105
D3880_RS00955  208690 ..  208704 -  -4.2  -3.51279   ATAGCCGATAAAAAT               CGGCTT TAG AAGCTG               TTTTTATCTATCAAC  52 121
        aguB NONE
        aguA  206272 ..  206311 -   -28  -4.66833   TCCTAAGGGTAAAAA  CGGCAACGCCCGCGGTCA GCAC TGACCGCGGGCGTTGGCG   TTTTGCCGATTCGTA 100 206
D3880_RS00930  201753 ..  201777 -  -7.7  -3.35597   TTTATCCGCGAAAGA          GCGACTGCGTG TTG CCCGCCATCGC          GAATAAATTCGCTCC  59 123
D3880_RS00890  194471 ..  194502 - -28.8  -3.32022   CGGCTGATACAGGAA      GCGGCAGCCCGGCG CACG CGCCGGGCTGCCGC       AACGCCGCCCCGCAA 100 58
D3880_RS00870  187496 ..  187508 -  -3.3  -3.57561   CGCCAATGGGCGAAA                CCGCA TTT TGCCG                GCGGTCGCGATTCTC  49 431
D3880_RS00850 NONE
D3880_RS00845  181118 ..  181153 -  -8.2  -3.54424   GCCGATCGGGCCAAA    CGGCCGGC-TCTCACGC CTT GCGCCAGACGCTGGCCA    GCCACGGCTGCTGGG  62 0
D3880_RS00840  179863 ..  179876 -  -3.8  -2.71731   CGTACTCGCGAAGCA               GTGC GGGGGG GCAC                GCCGGCGAACTGTTC  41 61
        tcyJ NONE
        tcyL NONE
        yecC  177513 ..  177548 - -11.2  -3.14564   GGATGGGTTGAGCAA    CGCGATACCCATCGGCC GGG GGT-GATGGGTATCGCT    ACGCTCAACCCATCC  69 40
D3880_RS00815  174520 ..  174549 - -11.4  -3.15249   GACACCCGTCAGCAA       CTGGCCG-AGCGC TACCT GCGCGACGGCCAG       CTGCCCGCCGCCGAG  66 216
D3880_RS00800  170675 ..  170693 -    -8  -2.57013   CCTCAACCCAACCTA             CCGGCTAC TGC GCCGCCGG             CACCACTTCGAGTTT  52 11
        recC NONE
        recB NONE
        recD  161105 ..  161115 -  -2.4  -4.59773   GCTGACGCCGAAAAA                 CGTC TAT GCCG                 TCGACTGCGATGACG  70 487
D3880_RS00765  157664 ..  157714 -  -8.9  -3.17075   CGCTCCTCAACCCAA CCTACGACGGTTAGCAGCCCGGA TTATC TCCGGGCTGCCAAGAGCCCCACG CCCATCACAAGGTCT  61 30
D3880_RS00705  144068 ..  144106 - -23.2  -3.85698   CCCGCGGGGCAGAAA   CTACAACGGGCGGGCAGC CTG GCTACCCGCCCGTTGCTG   GTGGCGCAAGTCAGT 100 36
D3880_RS00700  143613 ..  143626 -  -2.3  -5.33405   TGCATGAAAGAAAAA               CCTCG AGAT CTAGG                CGCAGCCCGCAGGCT  85 81
D3880_RS00695  142177 ..  142203 -  -5.6  -2.71144   TAGCGCCTCCAATGA         GTGGCAGCGCAG CGA CCGCGAGGCCGC         TGCCCGATTAGCTTC  46 33
D3880_RS00690  140685 ..  140700 -    -4  -2.57092   AATGCCATCAAGGGA              CTCC-TG ACT CATGGAG              TGAAACAACAGGGGA  40 120
D3880_RS00685  139901 ..  139930 - -22.3  -3.14132   GCCGTCCGCCAGCAA       TGCAAAGGCCCGC CGAA GCGGGCCTTTGCA        TTGCTCCTGCGCCAA 100 47
        csiR  135205 ..  135238 - -10.4  -3.57561   GGGCAACCCGGCAAA     CGAGGATTTTGCAC GCAACT GTGCAGAATCCTCA      CTCCATGAGCGGCCG  73 88
D3880_RS00660  133675 ..  133686 -  -5.8   -3.5394   AAATGGCCTCGGAAA                GCAG CTTG CTGC                 TAACGCGCTTCAGCG  55 214
D3880_RS00650  130304 ..  130352 -  -7.2  -3.31144   GGCTCAGCCCCAGAA GC-GCCGCTGTCGCCCGCCGGCT TTGC AGCGTGCAGGTGCCAGCGCCCGC CGTTTACTGGACCGT  56 188
D3880_RS00645 NONE
D3880_RS00640  126993 ..  127003 -  -5.4  -2.93708   CTGGCCCAAAAATAG                 TTGC ACA GCAA                 TCGAGTGGTAGGCAA  46 294
D3880_RS00615 NONE
D3880_RS22585  119264 ..  119274 -  -6.8  -3.05384   CGTTTTGCCACTTAA                 CGAC TAT GTCG                 CATTAGAGGAATCCT  52 325
D3880_RS00600 NONE
D3880_RS00595  117676 ..  117715 -  -5.6  -2.59748   CAGCGGGACAAGGTA  GGGTTTGCTATACCGCCG TAAA CGGCGAAATAGCAATCGG   TCGGCTGCAGTCGTT  46 106
D3880_RS00580  114849 ..  114867 -  -6.6  -3.53091   AGCTCGCCCTGGAAA             CCGCCATG CGC CGTGGCGA             GCTATTCCAGCTGTT  56 462
        gabD  112164 ..  112202 - -11.2  -3.85698   CGCGGGTTTTACAAA  TGCATAGGCGGATGACGC GCCTG GCGTCATCCGCCC-T-CA  TTAGTTTTGGCTTAC  82 37
        gabT  110718 ..  110735 - -12.7  -5.47218   TTCCAGGCAAAAAAA             GACCCGC CGGA GCGGGTC              TCAAATACGCCTGAC 100 50
D3880_RS22970 NONE
D3880_RS22900  109148 ..  109180 -  -4.8   -3.7108   ATGGCGAGATCGAAA     TCCTCGACCTGGAAC GCCT GCGCCAGGTCG-GCA      AACGCTAGTCGCGGC  57 30
D3880_RS00545  107613 ..  107628 -    -6  -5.10064   CCCAACACACAAAAA              GCCGGC ATCA GCCGGT               TTTTTTGTGGCTATG  85 282
D3880_RS00510 NONE
D3880_RS00505   99652 ..   99669 -  -7.7  -2.52676   TAGCGGCGTAACCCA             CCAGCGGC GCC GCC-CTGG             ACACCCGCGTCCAGC  52 456
D3880_RS00500   98476 ..   98519 -    -3  -4.07568   CCCCGTTGGGGAAAA TCCCAGGAGGGTGGATGTCGC TTT GC-ACATCCACCGCCGCGCGG GTGGAAAACGCTTCG  57 85
D3880_RS00480 NONE
D3880_RS00475   93045 ..   93092 -  -2.6  -4.59853   GCAAGCGCGGAAAAA TGCCCTGC-TCCGGCGTTCCCG TGCAGG CGGGAA-GCCGGCTGCCGCGGA CTTTCTGGTTCCCCG  68 75
D3880_RS00465   90742 ..   90757 -  -3.2  -4.57837   ATACTGCGTTAAAAA              CAGCCT CGGC AAGCCG               CTTGCGGCTAACGCG  68 215
        norR   87601 ..   87640 -  -7.8  -3.09015   GCGATACCCATCGAA  CCGCCAGGATGGGTATCGC TGC GCTCAACCCATCCT-ACGG  ACTGGCCTCCGGATT  56 50
        wrbA   85568 ..   85582 -  -2.1  -2.57132   GGGTCGGCGGAGAAT              CACTGC AAAC GC-GTG               GCCAGTTTCGCCACA  38 10
D3880_RS00440   84725 ..   84768 - -23.8  -3.22298   GTCAGGCAGCAGCAA CGCCGACCTCGGCGGCTACC GGTA GGTGCCCGCCGGGGTCGGCG CGCTCAACACCCCAT 100 40
        yihA   77219 ..   77253 -  -7.9  -3.63627   GGTTCAGATCTTAAA     CCCCGAGCCTC CCCCTCCCCATAC GAAGCTCGGGG     TTTTTTTTGCCTGCG  64 43
D3880_RS00390 NONE
D3880_RS00385   72593 ..   72643 - -13.8  -3.05463   ATCGGCCTGATGGAA GGCCCGCAGCTCGGCGAGGAACAG CGC CTGTACCTGGCCGAGAAGCGCGCT GCCTACGAGGCGCGT  72 309
D3880_RS00370   69350 ..   69371 -  -4.3  -2.72991   CCATATCCGCAACGA           CGACGCCGGC TAC GCCGCCA-CG           GTGCGCCAGAGCATG  43 127
D3880_RS00355 NONE
        znuC   66615 ..   66629 -  -2.1  -3.20028   TTGAGGAGAAAATCA              GGCATG CTTG CA-GCC               GTCTCCGTGCACATG  43 8
        znuB   65751 ..   65773 -  -9.9  -4.15565   TCGATTAGCGCAAAA          GCGCGCAAGT CTAC ACT-GCGCGC           CGCCTGGAGCCCAAA  84 83
D3880_RS00340   64644 ..   64660 -  -3.6  -4.37013   AATCAATCACGAAAA              CGAACC TTTTG GGTGCG              AAGTTATAGCGAGCG  65 250
D3880_RS00335 NONE
D3880_RS00330 NONE
D3880_RS00325   61955 ..   61974 -   -15  -4.27316   GTGGCCAATGCAAAA            GCCCGCTC GAGT GAGCGGGC             TTTTTGCTTTCCAGT 100 185
D3880_RS00290   55891 ..   55903 -  -3.3  -3.61398   GCCGCTGCTCAATAA                CCCGG ATT CCAAG                CTGTTCCCACCGCCC  49 511
D3880_RS00265   50843 ..   50854 -  -5.8  -4.07568   GGTGGTGGCGGAAAA                CTGC GGCT GCAG                 CGAGCGCGATACCTA  64 283
D3880_RS00255   49337 ..   49376 -  -5.6  -3.10244   TCGGGCAATAAACCA  CTTCCCG-CGCGCCCTCGG GGC CCAAGGGCGCTTCCATAAG  AAATGGCGCTATATC  49 34
D3880_RS00210   39974 ..   40009 - -10.4  -2.70932   GGGTGGCGGGAACCA    TGGTCGCCAACGGCAG CGGC CTGCAATGGACGACCA     TCCGCAACCTACTGC  57 306
D3880_RS00190   35119 ..   35131 -  -4.7  -3.67597   GCGCGCAGCGAACAA                TCCGC CGC GCGGT                ACCGTACTACAGTGG  54 32
D3880_RS00185   34283 ..   34306 -  -2.2  -4.09685   TGCGATGGTGGAAAA          CGCTGCGCGG TTTT CCACCCTACG           AGGGCCCGCTGCAGC  57 124
D3880_RS00170 NONE
D3880_RS00165   31418 ..   31437 -  -4.8  -3.15544   CGGCACGGGCACCAA            CGTGCCGC TCTG GCTGCTCG             GCTCGAGCCTGTTCA  47 513
D3880_RS00145   29325 ..   29360 -  -5.8  -3.14132   CTGGTGGCCGACGAA    CTGGCCGCCGGGCGCC TGCT GGCGCCCTGGGGCTTC     GTCGCCACCCCGGCG  49 273
        trpB NONE
        trpA NONE
D3880_RS00125   25659 ..   25671 -  -4.8  -3.05816   GTAGCCCGGATGCAA                TCCG GGAAG CGGA                GCTGCCGGTCTCCCC  46 415
D3880_RS00120   24375 ..   24400 -  -8.9  -3.16881   CATCCAGCTGACCAA         GACCGGCTTCA CCGA CGAGGCCGGCC          ATTGCCTGGTGATGC  56 342
D3880_RS00100   20286 ..   20343 -  -4.6  -3.06796   GCTGAGCGCAGCGAA GCCCAACGAGCGATGCTGGCCCCGGC GCCGTG GTTGAGATAAGCGCCGCTTGTTGGGC TTCGTCGCTGCGCTC  46 66
         def   16751 ..   16768 - -11.3  -5.33405   GTCACCAAAGAAAAA             GGCTTGC CGGG GCAAGCC              TTTGGAGAAGGGCGA 100 41
         fmt NONE
        rsmB NONE
        trkA   13099 ..   13111 -  -5.5   -3.7941   GATGCGTTAGAAGAA                GGTCA GAC CGACC                TGGAACAGCCGCTCG  60 4
D3880_RS00060   12276 ..   12291 - -11.8  -3.07816   CTGGTATTGAGCCAA              GGCGCC GCGA GGCGCC               TTTTTGTTGCCCGCG  68 389
        glyQ NONE
        glyS    7547 ..    7584 - -11.9  -3.46563   CATACACCATCACAA   GCAGGGCGGACCCACCGC TGA GCGGCGG-CCCGCCTCAC   CATCAGCCCAGCACG  74 28
        gmhB NONE
D3880_RS00025    6165 ..    6180 - -11.8   -5.4833   GCAGCCAATAAAAAA              CCCCGG GAAA CCGGGG               TTTTTTATTGGCTCT 100 62
